Query 010837
Match_columns 499
No_of_seqs 565 out of 2803
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 15:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4E-39 1.4E-43 323.7 35.1 436 43-494 82-589 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-35 5.5E-40 297.5 36.1 408 42-464 114-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.8E-27 3E-31 220.8 36.8 371 52-468 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.5E-27 2.9E-31 220.9 34.1 358 119-492 7-376 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-27 3.9E-32 230.8 21.2 136 263-399 84-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 7.4E-28 2.5E-32 232.1 18.8 198 268-466 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.9E-24 1E-28 211.3 30.3 424 45-483 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1E-21 3.5E-26 189.8 31.5 334 79-479 25-406 (450)
9 3fp2_A TPR repeat-containing p 99.9 2.8E-22 9.6E-27 198.4 28.0 422 44-483 24-492 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 6.8E-22 2.3E-26 191.1 30.0 373 41-471 22-443 (450)
11 2gw1_A Mitochondrial precursor 99.9 1.1E-21 3.8E-26 192.9 27.0 407 43-459 37-489 (514)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.6E-24 179.8 25.7 389 79-483 24-458 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.2E-18 1.4E-22 159.0 30.5 304 110-482 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 3.1E-18 1.1E-22 159.8 28.7 267 186-492 3-309 (359)
15 2ooe_A Cleavage stimulation fa 99.8 1E-16 3.5E-21 157.9 38.2 211 266-482 255-492 (530)
16 1b89_A Protein (clathrin heavy 99.8 7.4E-19 2.5E-23 161.7 19.3 282 94-410 17-306 (449)
17 2xm6_A Protein corresponding t 99.8 1.5E-16 5E-21 155.2 36.6 370 79-465 38-452 (490)
18 3hym_B Cell division cycle pro 99.8 6.2E-18 2.1E-22 155.9 24.7 285 182-469 18-321 (330)
19 3hym_B Cell division cycle pro 99.8 1.1E-17 3.7E-22 154.2 25.0 269 215-492 20-307 (330)
20 2xm6_A Protein corresponding t 99.8 1.4E-15 4.8E-20 148.2 37.8 358 108-485 36-435 (490)
21 3mkr_A Coatomer subunit epsilo 99.8 4.1E-16 1.4E-20 140.4 29.7 270 194-475 7-287 (291)
22 1fch_A Peroxisomal targeting s 99.8 1.8E-17 6.2E-22 155.4 19.9 276 198-478 37-355 (368)
23 1xi4_A Clathrin heavy chain; a 99.8 7.8E-15 2.7E-19 150.5 38.3 384 41-474 981-1376(1630)
24 2ooe_A Cleavage stimulation fa 99.8 2.1E-15 7.2E-20 148.5 32.9 405 41-450 9-495 (530)
25 1fch_A Peroxisomal targeting s 99.8 5.6E-17 1.9E-21 152.0 20.1 286 92-443 37-355 (368)
26 4eqf_A PEX5-related protein; a 99.7 3.4E-17 1.1E-21 153.4 18.1 256 218-478 66-352 (365)
27 4eqf_A PEX5-related protein; a 99.7 2.3E-16 7.8E-21 147.7 21.5 225 110-377 64-308 (365)
28 3mkr_A Coatomer subunit epsilo 99.7 7.5E-16 2.6E-20 138.7 23.8 244 56-344 10-264 (291)
29 1b89_A Protein (clathrin heavy 99.7 5.7E-16 2E-20 142.6 22.9 279 57-371 15-303 (449)
30 4g1t_A Interferon-induced prot 99.7 8.8E-16 3E-20 149.1 24.9 371 78-494 49-471 (472)
31 3cv0_A Peroxisome targeting si 99.7 2.3E-16 8E-21 145.1 19.0 258 185-479 20-312 (327)
32 3cv0_A Peroxisome targeting si 99.7 5.6E-15 1.9E-19 135.8 24.5 192 44-244 20-233 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 1.8E-17 6E-22 164.7 8.0 162 283-445 126-308 (1134)
34 1xi4_A Clathrin heavy chain; a 99.7 5.4E-13 1.9E-17 137.2 40.3 349 79-477 984-1340(1630)
35 4g1t_A Interferon-induced prot 99.7 5.5E-15 1.9E-19 143.5 23.2 382 42-458 48-469 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.8E-22 164.8 5.2 127 77-208 124-258 (1134)
37 2pl2_A Hypothetical conserved 99.7 4.1E-15 1.4E-19 127.8 17.2 195 281-480 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.6 2E-14 6.7E-19 127.2 21.1 206 263-483 19-237 (258)
39 3e4b_A ALGK; tetratricopeptide 99.6 2.1E-13 7.2E-18 130.9 25.7 378 50-481 8-420 (452)
40 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.3E-18 121.6 20.8 197 284-483 37-239 (252)
41 3uq3_A Heat shock protein STI1 99.6 5.4E-14 1.8E-18 124.4 17.8 223 186-448 5-237 (258)
42 2vq2_A PILW, putative fimbrial 99.6 2.2E-13 7.4E-18 117.7 20.0 198 283-483 7-212 (225)
43 2q7f_A YRRB protein; TPR, prot 99.6 7.1E-14 2.4E-18 122.4 15.0 198 282-483 21-223 (243)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.7E-13 5.8E-18 122.5 17.3 238 197-476 16-269 (275)
45 1ouv_A Conserved hypothetical 99.5 2.9E-12 9.8E-17 114.4 25.3 223 216-483 5-252 (273)
46 1ouv_A Conserved hypothetical 99.5 1.8E-12 6.2E-17 115.8 23.5 225 185-451 5-255 (273)
47 3u4t_A TPR repeat-containing p 99.5 6.1E-13 2.1E-17 118.7 20.2 193 286-482 39-250 (272)
48 3e4b_A ALGK; tetratricopeptide 99.5 1.3E-12 4.4E-17 125.4 23.6 190 283-485 175-390 (452)
49 3u4t_A TPR repeat-containing p 99.5 3.8E-13 1.3E-17 120.0 18.3 241 188-465 5-267 (272)
50 3sf4_A G-protein-signaling mod 99.5 3.1E-13 1.1E-17 128.2 18.4 61 184-244 7-74 (406)
51 4a1s_A PINS, partner of inscut 99.5 1.9E-13 6.4E-18 130.0 16.4 268 188-482 50-372 (411)
52 2h6f_A Protein farnesyltransfe 99.5 7E-13 2.4E-17 123.4 18.9 241 187-465 98-365 (382)
53 2pl2_A Hypothetical conserved 99.5 1.5E-12 5.2E-17 111.7 19.3 201 183-413 2-212 (217)
54 3ro2_A PINS homolog, G-protein 99.5 6.6E-13 2.3E-17 122.2 18.2 268 188-482 7-332 (338)
55 3vtx_A MAMA; tetratricopeptide 99.5 1.5E-12 5E-17 108.7 18.3 164 314-482 4-170 (184)
56 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-12 5.7E-17 114.4 18.9 193 45-244 37-236 (252)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.1E-13 1.1E-17 120.8 14.2 217 262-483 18-245 (275)
58 4abn_A Tetratricopeptide repea 99.5 3.6E-13 1.2E-17 130.1 15.3 209 263-478 82-317 (474)
59 2h6f_A Protein farnesyltransfe 99.5 4.3E-13 1.5E-17 124.8 14.1 203 283-493 130-357 (382)
60 2q7f_A YRRB protein; TPR, prot 99.5 6.3E-13 2.2E-17 116.3 14.0 177 283-463 56-237 (243)
61 2vq2_A PILW, putative fimbrial 99.5 1.1E-11 3.6E-16 106.9 21.3 199 217-451 8-215 (225)
62 3ulq_A Response regulator aspa 99.5 1.2E-11 4E-16 116.4 22.4 230 192-447 109-368 (383)
63 3sf4_A G-protein-signaling mod 99.5 2.3E-12 7.8E-17 122.1 17.7 296 110-469 8-363 (406)
64 4e6h_A MRNA 3'-END-processing 99.4 2.6E-10 8.9E-15 113.3 30.9 423 59-485 46-573 (679)
65 3vtx_A MAMA; tetratricopeptide 99.4 6.8E-12 2.3E-16 104.6 16.8 164 283-450 4-173 (184)
66 2ond_A Cleavage stimulation fa 99.4 5.2E-11 1.8E-15 108.2 22.7 177 301-482 81-270 (308)
67 4a1s_A PINS, partner of inscut 99.4 5.6E-12 1.9E-16 119.8 16.9 115 82-232 50-181 (411)
68 4e6h_A MRNA 3'-END-processing 99.4 1.1E-09 3.6E-14 108.9 33.4 407 39-451 60-574 (679)
69 3nf1_A KLC 1, kinesin light ch 99.4 2.1E-12 7.2E-17 117.5 11.8 239 217-481 27-306 (311)
70 3as5_A MAMA; tetratricopeptide 99.4 1.2E-11 4.1E-16 103.0 14.9 160 319-482 12-173 (186)
71 4gyw_A UDP-N-acetylglucosamine 99.4 1.1E-11 3.7E-16 124.7 16.8 163 314-481 8-173 (723)
72 3ulq_A Response regulator aspa 99.4 8.6E-12 2.9E-16 117.3 15.3 221 260-482 114-368 (383)
73 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5E-16 113.1 16.1 96 353-448 226-333 (338)
74 3q15_A PSP28, response regulat 99.3 2.2E-10 7.7E-15 107.4 23.7 229 191-446 106-364 (378)
75 3nf1_A KLC 1, kinesin light ch 99.3 4.2E-12 1.4E-16 115.5 11.5 240 185-449 26-309 (311)
76 2ond_A Cleavage stimulation fa 99.3 6E-10 2E-14 101.2 23.7 184 265-451 80-274 (308)
77 4abn_A Tetratricopeptide repea 99.3 4.6E-11 1.6E-15 115.3 15.9 180 299-483 83-288 (474)
78 3q15_A PSP28, response regulat 99.3 2.6E-10 8.9E-15 106.9 20.7 297 183-481 7-364 (378)
79 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.1E-15 96.2 16.9 164 285-451 9-177 (186)
80 4i17_A Hypothetical protein; T 99.3 7.9E-11 2.7E-15 101.9 15.2 189 283-483 6-210 (228)
81 1hz4_A MALT regulatory protein 99.3 4.9E-09 1.7E-13 98.0 27.5 260 189-480 17-320 (373)
82 4i17_A Hypothetical protein; T 99.2 3.6E-10 1.2E-14 97.7 17.3 203 247-462 6-223 (228)
83 3edt_B KLC 2, kinesin light ch 99.2 3.5E-11 1.2E-15 107.6 10.9 215 267-482 26-281 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.2 1.9E-10 6.6E-15 115.6 15.0 161 283-447 8-174 (723)
85 1hz4_A MALT regulatory protein 99.2 5.8E-09 2E-13 97.5 22.2 269 115-448 18-323 (373)
86 1qqe_A Vesicular transport pro 99.1 7.1E-10 2.4E-14 99.8 13.5 203 263-480 31-267 (292)
87 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.4E-13 89.9 20.6 238 195-451 22-286 (310)
88 3edt_B KLC 2, kinesin light ch 99.1 1.9E-09 6.4E-14 96.2 14.4 225 162-414 12-280 (283)
89 2fo7_A Synthetic consensus TPR 99.1 2.2E-09 7.4E-14 83.8 13.1 123 356-481 7-131 (136)
90 3qky_A Outer membrane assembly 99.1 3.6E-09 1.2E-13 93.4 15.4 182 284-483 15-225 (261)
91 2fo7_A Synthetic consensus TPR 99.0 5E-09 1.7E-13 81.6 14.0 131 317-450 3-135 (136)
92 3qky_A Outer membrane assembly 99.0 7.1E-09 2.4E-13 91.6 16.5 202 247-470 14-249 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.8E-08 6.3E-13 86.6 18.3 183 285-485 5-216 (225)
94 1qqe_A Vesicular transport pro 99.0 2.1E-08 7.1E-13 90.1 18.8 192 193-414 44-268 (292)
95 3qou_A Protein YBBN; thioredox 99.0 1.1E-08 3.9E-13 91.5 16.0 177 301-481 103-283 (287)
96 2r5s_A Uncharacterized protein 99.0 3.1E-09 1E-13 87.6 10.7 157 321-481 12-172 (176)
97 2pzi_A Probable serine/threoni 99.0 2.3E-09 7.9E-14 108.2 11.8 168 295-468 402-583 (681)
98 3rjv_A Putative SEL1 repeat pr 99.0 7.5E-08 2.6E-12 81.9 19.5 172 303-484 5-199 (212)
99 3mv2_B Coatomer subunit epsilo 99.0 5.7E-08 2E-12 85.8 19.1 239 224-483 20-283 (310)
100 4ga2_A E3 SUMO-protein ligase 99.0 3.9E-10 1.3E-14 90.2 4.8 137 326-468 8-149 (150)
101 2vsy_A XCC0866; transferase, g 99.0 7.3E-09 2.5E-13 102.7 14.8 159 297-460 2-169 (568)
102 3urz_A Uncharacterized protein 98.9 1.3E-08 4.5E-13 86.3 12.9 156 291-451 11-190 (208)
103 3urz_A Uncharacterized protein 98.9 8.6E-09 3E-13 87.5 11.5 160 317-483 6-187 (208)
104 3gyz_A Chaperone protein IPGC; 98.9 3.4E-09 1.2E-13 84.3 7.9 102 381-483 30-134 (151)
105 2ifu_A Gamma-SNAP; membrane fu 98.9 8.7E-08 3E-12 86.7 18.2 221 230-475 4-254 (307)
106 4ga2_A E3 SUMO-protein ligase 98.9 2.8E-09 9.7E-14 85.1 7.3 123 356-482 3-129 (150)
107 2vsy_A XCC0866; transferase, g 98.9 2.7E-08 9.1E-13 98.7 15.2 147 263-414 3-156 (568)
108 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.6E-12 80.2 17.3 174 267-450 4-200 (212)
109 2pzi_A Probable serine/threoni 98.8 1E-07 3.4E-12 96.3 18.5 168 260-433 402-583 (681)
110 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.6E-12 81.8 15.6 174 256-451 12-217 (225)
111 2r5s_A Uncharacterized protein 98.8 3E-08 1E-12 81.6 11.6 156 286-446 8-172 (176)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.8 9.3E-08 3.2E-12 81.3 14.7 120 357-482 13-150 (213)
113 2uy1_A Cleavage stimulation fa 98.8 7.6E-06 2.6E-10 78.9 29.6 338 94-446 28-412 (493)
114 3u3w_A Transcriptional activat 98.8 6.8E-07 2.3E-11 80.2 20.2 163 319-481 79-265 (293)
115 2vgx_A Chaperone SYCD; alterna 98.8 2.4E-08 8.2E-13 79.4 9.3 95 386-481 21-117 (148)
116 2qfc_A PLCR protein; TPR, HTH, 98.8 2.8E-07 9.6E-12 82.8 17.5 165 316-480 76-264 (293)
117 4gco_A Protein STI-1; structur 98.8 6E-08 2E-12 74.6 10.7 93 388-481 15-109 (126)
118 4gco_A Protein STI-1; structur 98.7 7.6E-08 2.6E-12 74.0 10.4 108 351-462 14-124 (126)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.8E-07 6.2E-12 79.5 13.7 127 287-414 9-149 (213)
120 1a17_A Serine/threonine protei 98.7 1.4E-07 4.9E-12 76.4 12.2 126 352-481 15-145 (166)
121 3dra_A Protein farnesyltransfe 98.7 6.6E-06 2.3E-10 73.4 23.6 156 298-458 124-298 (306)
122 3qou_A Protein YBBN; thioredox 98.7 1.4E-06 4.6E-11 77.9 18.6 124 286-410 153-279 (287)
123 2lni_A Stress-induced-phosphop 98.7 2.1E-07 7.2E-12 72.1 11.7 114 350-467 16-132 (133)
124 2ifu_A Gamma-SNAP; membrane fu 98.7 1.8E-07 6.3E-12 84.6 13.0 197 262-480 4-222 (307)
125 3dra_A Protein farnesyltransfe 98.7 1.2E-06 4E-11 78.2 17.7 213 263-481 47-286 (306)
126 2xcb_A PCRH, regulatory protei 98.7 1.6E-07 5.6E-12 74.0 10.9 95 386-481 18-114 (142)
127 2uy1_A Cleavage stimulation fa 98.6 5.9E-06 2E-10 79.6 22.7 339 121-481 24-412 (493)
128 2c2l_A CHIP, carboxy terminus 98.6 7E-08 2.4E-12 86.0 8.6 188 284-482 4-199 (281)
129 1p5q_A FKBP52, FK506-binding p 98.6 1.6E-07 5.5E-12 86.0 11.0 160 298-480 127-292 (336)
130 1na0_A Designed protein CTPR3; 98.6 3.1E-07 1.1E-11 70.1 11.0 113 351-466 10-124 (125)
131 2vyi_A SGTA protein; chaperone 98.6 2.6E-07 8.8E-12 71.3 10.5 117 350-469 12-130 (131)
132 4f3v_A ESX-1 secretion system 98.6 5.6E-07 1.9E-11 78.4 13.3 184 296-484 18-239 (282)
133 3gyz_A Chaperone protein IPGC; 98.6 9.7E-08 3.3E-12 75.8 7.8 97 352-451 38-137 (151)
134 2e2e_A Formate-dependent nitri 98.6 1.2E-07 4.1E-12 78.0 8.4 123 325-451 20-148 (177)
135 3gw4_A Uncharacterized protein 98.6 1.1E-06 3.7E-11 73.8 14.2 150 296-445 4-174 (203)
136 3gw4_A Uncharacterized protein 98.6 6.1E-07 2.1E-11 75.4 12.3 153 327-480 4-174 (203)
137 2kck_A TPR repeat; tetratricop 98.6 3.9E-07 1.3E-11 68.1 9.7 98 385-483 5-107 (112)
138 3u3w_A Transcriptional activat 98.6 2.2E-06 7.7E-11 76.8 16.3 157 290-446 81-265 (293)
139 2qfc_A PLCR protein; TPR, HTH, 98.6 1.5E-06 5.1E-11 78.0 15.1 159 288-446 79-265 (293)
140 3upv_A Heat shock protein STI1 98.5 7E-07 2.4E-11 68.6 10.7 93 388-481 6-100 (126)
141 1a17_A Serine/threonine protei 98.5 1.3E-06 4.5E-11 70.6 12.7 127 316-446 14-145 (166)
142 4gcn_A Protein STI-1; structur 98.5 5.2E-07 1.8E-11 69.4 9.2 94 388-481 10-111 (127)
143 3sz7_A HSC70 cochaperone (SGT) 98.5 7.3E-07 2.5E-11 72.2 10.2 104 349-456 10-116 (164)
144 2vgx_A Chaperone SYCD; alterna 98.5 3.1E-07 1.1E-11 72.9 7.8 99 350-451 21-122 (148)
145 2e2e_A Formate-dependent nitri 98.5 4.4E-07 1.5E-11 74.6 8.7 115 363-481 23-143 (177)
146 2fbn_A 70 kDa peptidylprolyl i 98.5 8E-07 2.7E-11 74.5 10.1 169 294-484 14-188 (198)
147 1hxi_A PEX5, peroxisome target 98.5 6.9E-07 2.4E-11 68.1 8.8 94 388-482 19-114 (121)
148 3q49_B STIP1 homology and U bo 98.5 1.8E-06 6.2E-11 67.2 11.5 100 348-450 7-109 (137)
149 2lni_A Stress-induced-phosphop 98.4 1.3E-06 4.3E-11 67.6 10.1 98 385-483 15-114 (133)
150 1na0_A Designed protein CTPR3; 98.4 1.5E-06 5.3E-11 66.1 10.5 97 386-483 9-107 (125)
151 3upv_A Heat shock protein STI1 98.4 1.1E-06 3.8E-11 67.5 9.4 94 352-448 6-102 (126)
152 4f3v_A ESX-1 secretion system 98.4 5.7E-06 2E-10 72.1 14.6 126 321-450 108-240 (282)
153 1elw_A TPR1-domain of HOP; HOP 98.4 2.3E-06 8E-11 64.3 10.7 92 389-481 7-100 (118)
154 2dba_A Smooth muscle cell asso 98.4 4.1E-06 1.4E-10 66.1 12.5 98 351-451 29-132 (148)
155 1elw_A TPR1-domain of HOP; HOP 98.4 2.3E-06 7.9E-11 64.4 10.6 105 352-460 6-113 (118)
156 2xcb_A PCRH, regulatory protei 98.4 1.2E-06 4E-11 69.0 9.1 97 352-451 20-119 (142)
157 3sz7_A HSC70 cochaperone (SGT) 98.4 2.4E-06 8.2E-11 69.1 11.0 97 314-414 10-107 (164)
158 1p5q_A FKBP52, FK506-binding p 98.4 2.3E-06 7.9E-11 78.3 11.9 119 283-405 146-283 (336)
159 2vyi_A SGTA protein; chaperone 98.4 2.5E-06 8.7E-11 65.5 10.3 112 317-432 14-128 (131)
160 3q49_B STIP1 homology and U bo 98.3 2.3E-06 7.9E-11 66.6 9.5 96 385-481 8-105 (137)
161 2dba_A Smooth muscle cell asso 98.3 6E-06 2E-10 65.1 11.8 98 385-483 27-129 (148)
162 3q7a_A Farnesyltransferase alp 98.3 0.00028 9.5E-09 63.6 23.5 177 264-445 104-329 (349)
163 2fbn_A 70 kDa peptidylprolyl i 98.3 9.3E-07 3.2E-11 74.1 6.4 139 263-406 18-176 (198)
164 2c2l_A CHIP, carboxy terminus 98.3 9E-06 3.1E-10 72.3 13.2 188 43-244 2-197 (281)
165 4b4t_Q 26S proteasome regulato 98.3 6.2E-06 2.1E-10 78.5 12.7 188 293-480 13-243 (434)
166 4gcn_A Protein STI-1; structur 98.3 5.5E-06 1.9E-10 63.6 9.7 59 318-377 11-69 (127)
167 3q7a_A Farnesyltransferase alp 98.3 2.8E-05 9.7E-10 70.1 15.5 213 263-480 68-329 (349)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.8E-10 77.1 13.3 160 298-480 248-413 (457)
169 1wao_1 Serine/threonine protei 98.2 1.7E-06 5.8E-11 83.2 7.5 116 358-477 14-134 (477)
170 3ro3_A PINS homolog, G-protein 98.2 1E-05 3.5E-10 64.7 10.5 129 353-481 12-157 (164)
171 4b4t_Q 26S proteasome regulato 98.2 0.00015 5.3E-09 68.7 20.4 186 193-378 11-244 (434)
172 2hr2_A Hypothetical protein; a 98.2 9.1E-06 3.1E-10 63.8 9.5 90 391-481 16-130 (159)
173 1ihg_A Cyclophilin 40; ppiase 98.2 7.5E-06 2.6E-10 75.8 10.5 136 316-474 224-362 (370)
174 3ro3_A PINS homolog, G-protein 98.2 6.3E-06 2.1E-10 66.0 8.7 130 318-447 12-158 (164)
175 2kck_A TPR repeat; tetratricop 98.2 1.6E-05 5.6E-10 58.9 10.4 99 42-141 3-107 (112)
176 3dss_A Geranylgeranyl transfer 98.2 0.00029 9.9E-09 63.2 19.7 181 265-451 90-308 (331)
177 2xev_A YBGF; tetratricopeptide 98.2 1.1E-05 3.9E-10 61.8 9.5 94 355-451 7-109 (129)
178 1hxi_A PEX5, peroxisome target 98.2 5.1E-06 1.7E-10 63.1 7.3 91 357-450 24-117 (121)
179 2if4_A ATFKBP42; FKBP-like, al 98.1 3.2E-06 1.1E-10 77.4 7.1 148 315-483 179-329 (338)
180 1elr_A TPR2A-domain of HOP; HO 98.1 7.9E-06 2.7E-10 62.7 8.4 109 351-463 5-122 (131)
181 1elr_A TPR2A-domain of HOP; HO 98.1 7.6E-06 2.6E-10 62.8 8.1 109 316-425 5-119 (131)
182 2xev_A YBGF; tetratricopeptide 98.1 2.6E-05 9E-10 59.7 10.5 90 321-414 8-104 (129)
183 3dss_A Geranylgeranyl transfer 98.1 0.00033 1.1E-08 62.8 18.4 178 300-482 90-304 (331)
184 3k9i_A BH0479 protein; putativ 98.1 4E-06 1.4E-10 63.3 5.1 88 363-451 3-94 (117)
185 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4.3E-10 73.4 9.1 150 284-451 179-332 (338)
186 3rkv_A Putative peptidylprolyl 98.0 8.6E-06 3E-10 65.6 7.1 67 385-451 62-130 (162)
187 3rkv_A Putative peptidylprolyl 98.0 2.2E-05 7.4E-10 63.2 9.2 94 389-483 14-127 (162)
188 3k9i_A BH0479 protein; putativ 98.0 6.2E-06 2.1E-10 62.2 5.3 84 398-482 2-90 (117)
189 1wao_1 Serine/threonine protei 97.9 7.6E-05 2.6E-09 71.7 12.4 116 291-410 13-134 (477)
190 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 7.3E-05 2.5E-09 71.5 11.0 127 284-414 268-414 (457)
191 1ihg_A Cyclophilin 40; ppiase 97.8 8.3E-05 2.9E-09 68.8 10.8 117 285-405 224-360 (370)
192 3ma5_A Tetratricopeptide repea 97.8 0.00011 3.9E-09 53.3 9.3 63 417-480 6-68 (100)
193 3n71_A Histone lysine methyltr 97.8 4.7E-05 1.6E-09 72.7 8.8 124 359-482 318-464 (490)
194 1na3_A Designed protein CTPR2; 97.8 8.8E-05 3E-09 52.5 8.3 81 386-467 9-91 (91)
195 1dce_A Protein (RAB geranylger 97.8 0.00064 2.2E-08 66.6 17.0 168 299-471 44-244 (567)
196 1klx_A Cysteine rich protein B 97.8 0.00027 9.3E-09 54.8 11.1 89 392-483 31-127 (138)
197 2kat_A Uncharacterized protein 97.8 0.00013 4.3E-09 54.6 8.8 80 368-450 3-85 (115)
198 3n71_A Histone lysine methyltr 97.7 6.4E-05 2.2E-09 71.8 8.3 123 196-343 319-463 (490)
199 2hr2_A Hypothetical protein; a 97.7 8E-05 2.7E-09 58.5 7.4 69 388-457 59-140 (159)
200 1klx_A Cysteine rich protein B 97.7 0.00099 3.4E-08 51.6 12.8 112 329-449 9-128 (138)
201 2l6j_A TPR repeat-containing p 97.6 6.5E-05 2.2E-09 55.6 5.5 92 385-476 3-101 (111)
202 2l6j_A TPR repeat-containing p 97.6 6E-05 2.1E-09 55.8 5.2 94 315-412 4-104 (111)
203 2kat_A Uncharacterized protein 97.6 0.00018 6.1E-09 53.7 7.6 78 333-414 3-81 (115)
204 1zu2_A Mitochondrial import re 97.5 6.3E-05 2.1E-09 58.9 3.6 85 398-483 14-121 (158)
205 1dce_A Protein (RAB geranylger 97.5 0.0015 5.1E-08 64.0 13.7 157 328-492 42-229 (567)
206 1zu2_A Mitochondrial import re 97.3 0.00024 8.1E-09 55.7 4.4 49 403-451 63-124 (158)
207 1na3_A Designed protein CTPR2; 97.2 0.0012 3.9E-08 46.5 7.7 66 417-483 8-73 (91)
208 3bee_A Putative YFRE protein; 97.2 0.0025 8.4E-08 45.2 8.8 69 416-485 4-75 (93)
209 2kc7_A BFR218_protein; tetratr 97.1 0.00043 1.5E-08 49.9 4.5 64 392-456 6-72 (99)
210 1qsa_A Protein (soluble lytic 97.1 0.17 5.7E-06 49.7 23.7 233 189-446 75-347 (618)
211 3ma5_A Tetratricopeptide repea 97.1 0.0017 5.6E-08 47.0 7.6 60 317-377 9-68 (100)
212 3qww_A SET and MYND domain-con 96.9 0.00071 2.4E-08 63.5 5.0 85 362-446 310-410 (433)
213 3qwp_A SET and MYND domain-con 96.9 0.0012 4.1E-08 62.0 6.3 90 357-446 294-399 (429)
214 3ly7_A Transcriptional activat 96.9 0.047 1.6E-06 49.2 16.0 67 385-451 276-343 (372)
215 3mkq_A Coatomer beta'-subunit; 96.9 0.048 1.6E-06 56.2 18.5 104 292-413 660-763 (814)
216 2kc7_A BFR218_protein; tetratr 96.8 0.0024 8.1E-08 45.8 6.3 59 424-483 6-65 (99)
217 3ly7_A Transcriptional activat 96.8 0.0059 2E-07 55.1 9.2 76 415-493 274-349 (372)
218 3qww_A SET and MYND domain-con 96.7 0.0045 1.5E-07 58.1 8.4 60 420-479 342-408 (433)
219 3mkq_B Coatomer subunit alpha; 96.6 0.19 6.4E-06 39.9 15.9 129 292-444 13-141 (177)
220 3lvg_A Clathrin heavy chain 1; 96.6 6.7E-05 2.3E-09 69.0 -4.7 236 79-335 53-324 (624)
221 3qwp_A SET and MYND domain-con 96.5 0.0061 2.1E-07 57.3 7.9 94 193-311 294-398 (429)
222 3mkq_B Coatomer subunit alpha; 96.5 0.16 5.6E-06 40.2 14.7 105 194-312 13-117 (177)
223 3mkq_A Coatomer beta'-subunit; 96.4 0.056 1.9E-06 55.7 15.3 46 326-377 663-708 (814)
224 1wy6_A Hypothetical protein ST 96.4 0.093 3.2E-06 39.1 11.6 140 326-485 18-157 (172)
225 3bee_A Putative YFRE protein; 96.4 0.023 7.9E-07 40.1 8.5 67 384-450 4-75 (93)
226 3u64_A Protein TP_0956; tetrat 96.1 0.027 9.2E-07 48.7 8.9 82 366-450 179-272 (301)
227 3lvg_A Clathrin heavy chain 1; 96.0 0.062 2.1E-06 49.9 11.2 199 29-238 70-325 (624)
228 1pc2_A Mitochondria fission pr 96.0 0.012 4.1E-07 45.5 5.6 87 363-451 11-104 (152)
229 2v5f_A Prolyl 4-hydroxylase su 95.9 0.037 1.3E-06 40.0 7.9 65 387-451 6-79 (104)
230 3u64_A Protein TP_0956; tetrat 95.9 0.039 1.3E-06 47.7 8.8 113 297-414 134-268 (301)
231 2v5f_A Prolyl 4-hydroxylase su 95.8 0.044 1.5E-06 39.6 8.0 66 417-482 4-75 (104)
232 1pc2_A Mitochondria fission pr 95.4 0.062 2.1E-06 41.5 7.5 85 330-417 13-103 (152)
233 4h7y_A Dual specificity protei 95.3 0.063 2.2E-06 40.9 7.2 112 347-461 10-136 (161)
234 3lpz_A GET4 (YOR164C homolog); 95.0 1.8 6E-05 38.4 18.1 141 81-232 36-182 (336)
235 1qsa_A Protein (soluble lytic 95.0 3 0.0001 40.9 34.0 378 66-487 57-484 (618)
236 4h7y_A Dual specificity protei 95.0 0.073 2.5E-06 40.6 6.7 53 432-485 74-126 (161)
237 3lpz_A GET4 (YOR164C homolog); 94.5 2.4 8.3E-05 37.6 17.3 178 89-309 21-212 (336)
238 2wpv_A GET4, UPF0363 protein Y 94.1 2.9 9.9E-05 36.8 18.0 165 61-236 13-187 (312)
239 4gns_B Protein CSD3, chitin bi 94.0 0.18 6.1E-06 50.4 9.0 55 425-480 344-398 (754)
240 1nzn_A CGI-135 protein, fissio 93.5 0.18 6.2E-06 37.4 6.1 92 358-451 9-107 (126)
241 1wy6_A Hypothetical protein ST 93.1 2.1 7.1E-05 32.0 14.1 144 288-450 9-157 (172)
242 1y8m_A FIS1; mitochondria, unk 93.1 1.1 3.9E-05 33.8 9.8 69 383-451 36-110 (144)
243 2wpv_A GET4, UPF0363 protein Y 93.0 4.4 0.00015 35.6 17.6 182 87-310 20-214 (312)
244 2uwj_G Type III export protein 92.5 1.6 5.4E-05 30.4 8.9 90 57-151 18-107 (115)
245 1nzn_A CGI-135 protein, fissio 92.4 1.1 3.7E-05 33.3 8.9 93 322-417 8-106 (126)
246 2ff4_A Probable regulatory pro 92.2 0.4 1.4E-05 44.2 7.9 64 388-451 173-243 (388)
247 3ffl_A Anaphase-promoting comp 92.2 0.99 3.4E-05 35.2 8.8 113 289-415 25-151 (167)
248 2p58_C Putative type III secre 91.8 1.7 5.8E-05 30.3 8.5 90 57-151 19-108 (116)
249 3txn_A 26S proteasome regulato 91.7 7.9 0.00027 35.4 19.9 89 289-377 104-208 (394)
250 3o48_A Mitochondria fission 1 91.5 0.66 2.2E-05 34.6 6.8 68 384-451 38-111 (134)
251 4fhn_B Nucleoporin NUP120; pro 91.0 6.6 0.00023 42.0 16.8 159 190-366 816-987 (1139)
252 3ffl_A Anaphase-promoting comp 90.8 1.3 4.6E-05 34.5 8.2 28 454-481 123-150 (167)
253 4b4t_P 26S proteasome regulato 90.5 10 0.00035 35.5 15.8 95 319-413 141-245 (445)
254 4gns_B Protein CSD3, chitin bi 90.3 2.7 9.2E-05 42.1 12.0 53 323-376 345-397 (754)
255 4b4t_P 26S proteasome regulato 89.9 4.4 0.00015 38.0 12.8 49 263-311 30-83 (445)
256 1v54_E Cytochrome C oxidase po 89.8 1.7 5.8E-05 30.4 7.1 63 330-394 25-87 (109)
257 4fhn_B Nucleoporin NUP120; pro 89.5 5.3 0.00018 42.7 14.5 191 288-480 816-1048(1139)
258 2ff4_A Probable regulatory pro 89.2 2.7 9.1E-05 38.7 10.6 60 352-414 173-233 (388)
259 3txn_A 26S proteasome regulato 88.9 14 0.00047 33.9 15.3 21 290-310 25-45 (394)
260 4ady_A RPN2, 26S proteasome re 87.7 28 0.00095 35.9 27.8 247 194-445 382-656 (963)
261 3esl_A Checkpoint serine/threo 85.7 9.3 0.00032 30.9 10.3 50 402-451 95-148 (202)
262 1v54_E Cytochrome C oxidase po 85.6 2.3 7.7E-05 29.8 5.7 65 55-119 19-87 (109)
263 2y69_E Cytochrome C oxidase su 85.4 2.2 7.5E-05 31.7 5.9 65 54-118 61-129 (152)
264 2y69_E Cytochrome C oxidase su 83.8 7.9 0.00027 28.8 8.2 62 331-394 69-130 (152)
265 1zbp_A Hypothetical protein VP 83.7 9.2 0.00031 32.6 9.8 117 324-451 6-133 (273)
266 4ady_A RPN2, 26S proteasome re 80.8 55 0.0019 33.8 23.6 259 90-359 384-670 (963)
267 4a1g_A Mitotic checkpoint seri 80.3 18 0.0006 27.8 9.5 80 405-487 54-135 (152)
268 3ltm_A Alpha-REP4; protein eng 77.8 26 0.0009 28.3 18.5 49 184-232 31-79 (211)
269 1y8m_A FIS1; mitochondria, unk 77.5 21 0.00071 27.0 9.1 67 347-414 36-105 (144)
270 2uwj_G Type III export protein 76.2 17 0.00059 25.4 9.4 88 263-355 20-107 (115)
271 4b4t_R RPN7, 26S proteasome re 76.2 12 0.00043 34.7 9.3 61 352-412 133-194 (429)
272 1oyz_A Hypothetical protein YI 74.6 40 0.0014 28.8 19.0 11 458-468 240-250 (280)
273 2wvi_A Mitotic checkpoint seri 74.2 28 0.00096 27.1 9.2 35 417-451 95-129 (164)
274 3o48_A Mitochondria fission 1 73.4 19 0.00066 26.8 7.7 68 347-417 37-110 (134)
275 1zbp_A Hypothetical protein VP 72.9 10 0.00034 32.3 6.9 57 395-451 6-64 (273)
276 1wdy_A 2-5A-dependent ribonucl 70.5 48 0.0016 28.0 12.9 83 224-308 152-240 (285)
277 3ltj_A Alpharep-4; protein eng 68.1 44 0.0015 26.6 19.6 52 183-234 25-76 (201)
278 2p58_C Putative type III secre 67.9 28 0.00097 24.3 11.3 88 263-355 21-108 (116)
279 3jxi_A Vanilloid receptor-rela 66.2 24 0.00082 29.7 8.4 120 118-241 9-161 (260)
280 4b4t_R RPN7, 26S proteasome re 66.1 17 0.00058 33.8 7.7 54 84-137 135-194 (429)
281 3ltj_A Alpharep-4; protein eng 66.0 49 0.0017 26.4 18.6 50 78-127 26-75 (201)
282 3ltm_A Alpha-REP4; protein eng 65.7 51 0.0018 26.5 18.0 49 78-126 31-79 (211)
283 2nsz_A Programmed cell death p 64.3 32 0.0011 25.5 7.5 63 288-350 11-78 (129)
284 4b4t_S RPN3, 26S proteasome re 64.0 33 0.0011 32.5 9.1 180 284-485 231-432 (523)
285 2nsz_A Programmed cell death p 59.4 31 0.0011 25.5 6.7 23 222-244 12-34 (129)
286 4aez_C MAD3, mitotic spindle c 56.1 72 0.0025 26.2 8.7 36 416-451 148-183 (223)
287 3esl_A Checkpoint serine/threo 55.8 61 0.0021 26.2 8.1 51 363-414 92-143 (202)
288 2etb_A Transient receptor pote 55.6 51 0.0018 27.5 8.6 121 117-241 5-157 (256)
289 2ion_A PDCD4, programmed cell 55.4 31 0.0011 26.5 6.2 63 288-350 13-80 (152)
290 2d2s_A Exocyst complex compone 53.4 41 0.0014 28.1 7.1 23 117-139 24-46 (235)
291 2ion_A PDCD4, programmed cell 52.3 45 0.0016 25.5 6.7 23 222-244 14-36 (152)
292 2zu6_B Programmed cell death p 50.5 1.3E+02 0.0044 26.3 10.9 194 83-282 6-235 (307)
293 3kea_A K1L; tropism, ANK repea 50.0 1.2E+02 0.0041 25.8 10.2 74 230-309 9-84 (285)
294 1wdy_A 2-5A-dependent ribonucl 49.7 1.1E+02 0.0037 25.7 9.8 52 192-243 8-62 (285)
295 2pnn_A Transient receptor pote 49.2 93 0.0032 26.2 9.2 120 118-241 17-169 (273)
296 3bqo_A Telomeric repeat-bindin 48.6 1E+02 0.0035 24.7 8.0 50 402-451 94-150 (211)
297 4b4t_S RPN3, 26S proteasome re 48.3 1E+02 0.0035 29.2 9.6 58 187-244 232-297 (523)
298 4gq2_M Nucleoporin NUP120; bet 44.2 1.5E+02 0.005 31.0 11.1 53 356-414 816-868 (950)
299 4g8k_A 2-5A-dependent ribonucl 43.7 1.6E+02 0.0055 25.6 10.2 78 270-352 220-303 (337)
300 2p1h_A APAF-1, apoptotic prote 43.3 76 0.0026 21.6 6.4 61 64-128 24-84 (94)
301 1k1a_A B-cell lymphoma 3-encod 43.1 1E+02 0.0036 25.0 8.4 26 119-144 14-39 (241)
302 3l6a_A Eukaryotic translation 41.4 78 0.0027 28.5 7.5 28 189-216 15-42 (364)
303 2d2s_A Exocyst complex compone 40.8 80 0.0027 26.3 7.0 27 385-411 90-116 (235)
304 2qx5_A Nucleoporin NIC96; mRNA 40.5 2.8E+02 0.0096 27.4 21.2 84 222-313 299-385 (661)
305 2r9g_A AAA ATPase, central reg 40.5 1.4E+02 0.0049 24.0 8.1 66 117-183 17-85 (204)
306 1n11_A Ankyrin; clathrin, BAND 40.0 79 0.0027 29.1 7.8 357 86-481 17-401 (437)
307 3eu9_A Huntingtin-interacting 40.0 1.1E+02 0.0037 24.8 8.1 55 425-483 181-237 (240)
308 2fe3_A Peroxide operon regulat 38.4 1E+02 0.0035 23.2 6.8 34 327-360 33-66 (145)
309 1ug3_A EIF4GI, eukaryotic prot 37.0 2.2E+02 0.0076 25.2 10.0 26 190-215 15-40 (339)
310 3ygs_P Procaspase 9; apoptosis 36.5 36 0.0012 23.6 3.6 63 66-130 25-87 (97)
311 2ijq_A Hypothetical protein; s 35.2 88 0.003 24.2 5.8 46 399-444 45-101 (161)
312 3ygs_P Procaspase 9; apoptosis 35.0 65 0.0022 22.3 4.7 38 200-237 51-88 (97)
313 1k1a_A B-cell lymphoma 3-encod 34.9 90 0.0031 25.4 6.7 83 52-135 13-100 (241)
314 2xig_A Ferric uptake regulatio 34.0 1.5E+02 0.0052 22.4 7.3 45 320-364 31-75 (150)
315 3eu9_A Huntingtin-interacting 32.8 1.4E+02 0.005 24.0 7.7 19 88-106 47-65 (240)
316 3bge_A Predicted ATPase; struc 32.8 1.9E+02 0.0066 23.2 7.9 41 116-156 9-52 (201)
317 3ctd_A Putative ATPase, AAA fa 32.7 2E+02 0.0068 23.4 8.3 68 116-183 37-107 (213)
318 3hra_A Ankyrin repeat family p 32.7 1.7E+02 0.006 22.7 8.0 80 226-306 112-197 (201)
319 1wgl_A TOLL-interacting protei 31.3 20 0.00067 22.3 1.3 24 465-488 35-58 (59)
320 3bu8_A Telomeric repeat-bindin 31.1 2.2E+02 0.0074 23.3 7.5 21 357-377 121-141 (235)
321 4ets_A Ferric uptake regulatio 30.5 1.2E+02 0.0042 23.3 6.2 13 365-377 47-59 (162)
322 1oyz_A Hypothetical protein YI 29.5 2.5E+02 0.0086 23.5 22.8 41 191-231 42-82 (280)
323 2o03_A Probable zinc uptake re 29.4 1.1E+02 0.0037 22.5 5.5 46 320-365 15-60 (131)
324 3hra_A Ankyrin repeat family p 29.0 2E+02 0.007 22.3 8.5 172 293-472 11-194 (201)
325 2zu6_B Programmed cell death p 28.3 1.5E+02 0.005 26.0 6.8 63 288-350 170-237 (307)
326 3mv2_A Coatomer subunit alpha; 28.2 3.1E+02 0.01 24.1 10.8 126 325-483 124-257 (325)
327 3b7b_A Euchromatic histone-lys 28.1 88 0.003 25.5 5.4 80 397-481 152-235 (237)
328 3mwm_A ZUR, putative metal upt 26.8 1.2E+02 0.004 22.7 5.3 49 49-97 17-65 (139)
329 2p1h_A APAF-1, apoptotic prote 26.2 1.6E+02 0.0053 20.0 6.7 38 199-236 49-86 (94)
330 2o03_A Probable zinc uptake re 25.9 1.1E+02 0.0038 22.5 5.0 48 50-97 15-62 (131)
331 3kea_A K1L; tropism, ANK repea 25.8 3E+02 0.01 23.2 9.9 17 195-211 37-53 (285)
332 1n11_A Ankyrin; clathrin, BAND 25.6 3.8E+02 0.013 24.3 10.8 320 131-487 27-371 (437)
333 3bu8_A Telomeric repeat-bindin 25.5 2.8E+02 0.0094 22.7 10.9 51 366-416 88-144 (235)
334 3mwm_A ZUR, putative metal upt 25.2 99 0.0034 23.1 4.7 45 320-364 18-62 (139)
335 2b7e_A PRE-mRNA processing pro 24.4 64 0.0022 20.0 2.7 30 127-156 2-31 (59)
336 3aji_A 26S proteasome non-ATPa 24.2 2.2E+02 0.0076 22.8 7.3 186 288-487 7-199 (231)
337 2wvi_A Mitotic checkpoint seri 23.9 2.5E+02 0.0087 21.7 9.6 50 437-486 79-129 (164)
338 3i5p_A Nucleoporin NUP170; hel 23.8 4.8E+02 0.016 24.8 10.8 30 453-482 217-246 (525)
339 4fke_A Aminopeptidase N; zinc 23.8 6.2E+02 0.021 26.1 11.6 125 354-478 690-818 (909)
340 1ug3_A EIF4GI, eukaryotic prot 23.8 3.8E+02 0.013 23.6 10.9 60 288-347 15-78 (339)
341 3eyy_A Putative iron uptake re 23.1 1.7E+02 0.0059 21.9 5.7 30 331-360 33-62 (145)
342 2rg8_A Programmed cell death p 22.5 2.2E+02 0.0075 22.0 6.2 25 222-246 15-39 (165)
343 4g8k_A 2-5A-dependent ribonucl 22.4 3.8E+02 0.013 23.1 11.2 268 191-487 27-328 (337)
344 3ljn_A Hypothetical protein; a 22.3 2.7E+02 0.0091 24.5 7.9 175 291-478 57-266 (364)
345 4gq2_M Nucleoporin NUP120; bet 22.2 6.8E+02 0.023 26.0 11.9 124 192-329 816-950 (950)
346 1mzb_A Ferric uptake regulatio 22.0 1.4E+02 0.0049 22.0 5.0 43 52-94 24-67 (136)
347 3eiq_C Programmed cell death p 21.5 4.4E+02 0.015 23.5 14.9 197 288-486 58-286 (358)
348 4a1g_A Mitotic checkpoint seri 21.3 2.8E+02 0.0094 21.2 9.8 47 405-451 84-134 (152)
349 3m0z_A Putative aldolase; MCSG 21.1 1.6E+02 0.0055 24.2 5.1 80 402-481 147-246 (249)
350 2ijq_A Hypothetical protein; s 21.1 2.9E+02 0.0099 21.3 7.3 52 327-378 44-103 (161)
351 1bd8_A P19INK4D CDK4/6 inhibit 21.0 1E+02 0.0036 22.9 4.2 16 294-309 9-24 (156)
352 2xig_A Ferric uptake regulatio 20.8 1.6E+02 0.0055 22.3 5.1 59 69-128 16-78 (150)
353 2bn5_A PSI; nuclear protein, s 20.3 1.1E+02 0.0037 16.1 2.8 22 459-480 8-29 (33)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-39 Score=323.73 Aligned_cols=436 Identities=12% Similarity=0.014 Sum_probs=379.5
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC--CCChHHHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAG 120 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~ 120 (499)
++...|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..+|+.+. .+++.+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 56778999999999999999999999999965 4788899999999999999999999999984 6789999999999
Q ss_pred HHhCCChhhHHHHHHHHHHc---------------CCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCc
Q 010837 121 YLKNGQVEESLSLVRKLVSS---------------GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (499)
|.+.|++++|+++|+++... |..++..+|+.+..++ ...|+.+.|..+|+.+.+.+ +.+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~-p~~ 233 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY-----TNLSNFDRAKECYKEALMVD-AKC 233 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-chh
Confidence 99999999999999953222 2344578999999999 89999999999999998875 223
Q ss_pred hhHHH--------------------------------------HHHHHHHhCCChhHHHHHHHhccC--CChHhHHHHHH
Q 010837 186 DVLYT--------------------------------------ALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMIS 225 (499)
Q Consensus 186 ~~~~~--------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~ 225 (499)
...+. .++..|.+.|++++|.++|+++.+ ++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 33332 335566788999999999999987 68999999999
Q ss_pred HHHhCCCHHHHHHHHHhcC--C-CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHH
Q 010837 226 GFMSQGFVEDAEEIFRKTV--E-KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (499)
.|.+.|++++|.++|+++. . .+..++..++..+... |+.++|..+++.+.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999987 3 3667888888888766 88999999999998654 3467899999999999999999
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHh
Q 010837 303 ARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 303 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998864 467899999999999999999999999998864 557889999999999999999999999999843
Q ss_pred cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 380 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
. +.+..+|+.++.+|.+.|++++|.++|+++.+ .|+ ..+|..++.+|.+.|++++|.+.++++.+.+|.
T Consensus 471 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 F--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp C--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred C--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 1 33788999999999999999999999998854 466 789999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
. ..+|..++.+|.+.|++++|.+.++++.+. .|+....|..
T Consensus 549 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 589 (597)
T 2xpi_A 549 D-ANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDL 589 (597)
T ss_dssp C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred C-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHH
Confidence 6 899999999999999999999999999884 4554444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-35 Score=297.49 Aligned_cols=408 Identities=11% Similarity=-0.044 Sum_probs=356.6
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCC------------
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR------------ 109 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------ 109 (499)
.|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+|.+.|++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 191 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLM 191 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------C
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccc
Confidence 457788899999999999999999999988644 678999999999999999999999999965443
Q ss_pred -------ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHH-------------------------------
Q 010837 110 -------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFS------------------------------- 150 (499)
Q Consensus 110 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~------------------------------- 150 (499)
++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 269 (597)
T 2xpi_A 192 QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269 (597)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHH
T ss_pred cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHH
Confidence 47899999999999999999999999999864 33 22222
Q ss_pred -------HHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhH
Q 010837 151 -------MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICS 220 (499)
Q Consensus 151 -------~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 220 (499)
.++..+ ...++.+.|..+++.+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 270 ~~~~~~~~~~~~~-----~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (597)
T 2xpi_A 270 FLRSLYMLKLNKT-----SHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342 (597)
T ss_dssp HHHHHHHTTSCTT-----TTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHHHHHHHHHH-----cCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH
Confidence 224445 6778889999999988765 58899999999999999999999999999964 367899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 297 (499)
+.++.++.+.|++++|.++++++. ..+..++..+...+.+. |+.++|..+|+.+.+... .+..+|+.++.+|.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV-NKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 999999999999999999999886 34677888888888777 899999999999988543 3577999999999999
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 298 GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 298 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998864 477899999999999999999999999998864 5578999999999999999999999999
Q ss_pred HchHhc---CCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 375 SMERDY---SMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 375 ~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
++.+.. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+ +.+..+|..++.+|.+.|++++|.+.++++.+.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 998432 56776 78999999999999999999999999876 458899999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHH
Q 010837 448 NANDRPGAYVALSNTLA 464 (499)
Q Consensus 448 ~~~~~~~~~~~l~~~~~ 464 (499)
.|.. ...+..+..+|.
T Consensus 580 ~p~~-~~~~~~l~~~~~ 595 (597)
T 2xpi_A 580 SPNE-IMASDLLKRALE 595 (597)
T ss_dssp CTTC-HHHHHHHHHTTC
T ss_pred CCCC-hHHHHHHHHHHh
Confidence 9987 788888877664
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.8e-27 Score=220.80 Aligned_cols=371 Identities=13% Similarity=0.107 Sum_probs=275.5
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChh
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 128 (499)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++... +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 455667889999999998888875 4556677777888888899999988887655 346678888999999999999
Q ss_pred hHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHH
Q 010837 129 ESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 129 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
+|++.|+++.+. .|+ ..+|..+..++ ...++.+.|...+..+.+.. +.+...+..+...+...|++++|.+
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAAL-----VAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHH-----HHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 999999988764 343 33455555555 55555666666666555543 2233344555555555566666666
Q ss_pred HHHhccC--C-ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCc
Q 010837 208 VFDMMLE--K-NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284 (499)
Q Consensus 208 ~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (499)
.|+++.+ | +..+|..+...+...|++++|.+.|+ ++.+..+ .+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~--------------------------------~al~~~p-~~~ 203 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE--------------------------------KAVTLDP-NFL 203 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH--------------------------------HHHHHCT-TCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------------------------------HHHhcCC-CcH
Confidence 5555533 1 34455555555555555555555554 4444322 234
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 361 (499)
..+..+...+...|++++|...|++..+ | +..++..+...+.+.|++++|.+.|+++.+.+ +.+..++..+..++.
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 5667778888889999999999887754 3 57788889999999999999999999998853 345678889999999
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
+.|++++|...|+++.+. .+.+..++..+...+.+.|++++|.+.++++.+ +.+..++..+..++.+.|++++|.+
T Consensus 283 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999843 234778899999999999999999999999887 4467889999999999999999999
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 440 AANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.++++++..|.. ...|..++..+.+.|+
T Consensus 361 ~~~~a~~~~p~~-~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 361 HYKEAIRISPTF-ADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTC-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCC-HHHHHhHHHHHHHccC
Confidence 999999988877 8888888888877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.5e-27 Score=220.93 Aligned_cols=358 Identities=13% Similarity=0.086 Sum_probs=283.1
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
..+.+.|++++|++.++++.+. .|+.. .+..+...+ ...++.+.+...++...+.. +.+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIH-----FQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH
Confidence 3445566666666666666554 33333 233333333 45556666666666655543 556677888888888
Q ss_pred hCCChhHHHHHHHhccC--C-ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 198 KGGKTSYARIVFDMMLE--K-NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
+.|++++|++.|+++.+ | +..+|..+..++.+.|++++|.+.|+++. .|+.......+..+....|+.++|...+
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888888888888754 3 45678888888888888888888888876 5666555555555555568888899888
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
+.+.+..+ .+..++..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|...+++..+.. +.+
T Consensus 159 ~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 159 LKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 88887643 2467888999999999999999999999874 356788999999999999999999999998853 345
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLS 426 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 426 (499)
..++..+..++...|++++|...|+++.+ ..| +..+|..+..++.+.|++++|++.|+++.+ +.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 78899999999999999999999999983 345 577899999999999999999999999876 567889999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccc
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
.+...|++++|.+.++++.+..|.. ..++..++.+|.+.|++++|.+.++++.+ +.|+....|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~ 376 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEF-AAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAY 376 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHH
Confidence 9999999999999999999988876 88999999999999999999999999987 455544433
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-27 Score=230.83 Aligned_cols=136 Identities=12% Similarity=0.150 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
+..+.|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 55668888999999999999999999999999999999999999999974 79999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 399 (499)
++|.+.|+.||..||+.+|.+|++.|++++|.+++++|. +.+..|+..+|+.++..|...
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999998 559999999999999988753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.4e-28 Score=232.08 Aligned_cols=198 Identities=15% Similarity=0.201 Sum_probs=148.5
Q ss_pred HHHHHHHHHHcccCCCc-hhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCC---------ChhH
Q 010837 268 ALEVHCQLIKNVFFEDV-KLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNG---------NPNQ 333 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g---------~~~~ 333 (499)
+..+.+.+.+.+....+ .+++.+|++|++.|++++|.++|++|.+ ||..+|++||.+|++.+ ..++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 33444444444443332 2345555666666666666666666542 55666666666665443 3678
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|+.||..+|+.||.+|++.|++++|.++|++|.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999998 55999999999999999999999999999999987
Q ss_pred C---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 414 E---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 414 ~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+ .||..||+.||.+|++.|+.++|.+++++|.+.+..|+..||+.++..+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 6 5999999999999999999999999999999999999889999998888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-24 Score=211.34 Aligned_cols=424 Identities=12% Similarity=-0.006 Sum_probs=287.6
Q ss_pred cchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHH
Q 010837 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGY 121 (499)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 121 (499)
...+......+...|++++|...|+++.+.. |+...+..+..++.+.|++++|...|+++. +.+..+|..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456677888899999999999999999987 789999999999999999999999999876 34677899999999
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHH---Hh
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY---VK 198 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~ 198 (499)
.+.|++++|+..|+++...+ +++......++..+ ........+...+..+...+..|+...+..-.... ..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERN-----LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHH-----HHHHHHHHHTTC---------------------------C
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999875 33444444444333 11111111111121111111111111000000000 00
Q ss_pred CCChhHHHHHHHhc---------cCC-ChHhHHHHHHHHHh---CCCHHHHHHHHHhcCC----------------CC-h
Q 010837 199 GGKTSYARIVFDMM---------LEK-NVICSTSMISGFMS---QGFVEDAEEIFRKTVE----------------KD-I 248 (499)
Q Consensus 199 ~g~~~~A~~~~~~~---------~~~-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~----------------~~-~ 248 (499)
......+...+... ..+ +...+......+.. .|++++|...|+++.+ |+ .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 01111111111111 111 23344444444444 6777777777766543 11 2
Q ss_pred hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010837 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGY 325 (499)
Q Consensus 249 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 325 (499)
..+..+...+... |++++|...++.+.+.... ...+..+..+|...|++++|...++++.+ .+...+..+...+
T Consensus 238 ~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLK-NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHS-SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 2344444444444 7777888888777776544 66777788888888888888888887764 3566788888888
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
...|++++|...+++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887753 3356677888888888888888888888887431 22566778888888888888888
Q ss_pred HHHHHhCCC----CCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHH
Q 010837 406 LKFVLEMPE----KPN----SDVWAALLSSCRL---HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 406 ~~~~~~~~~----~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
.+.++++.. .++ ..++..+...+.. .|++++|...++++.+..+.. ..++..++.+|.+.|++++|.+
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-EQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhcCHHHHHH
Confidence 888887765 122 3478888888888 888888888888888888776 7788888888888888888888
Q ss_pred HHHHHHhCC
Q 010837 475 LREKMKLRG 483 (499)
Q Consensus 475 ~~~~~~~~~ 483 (499)
.+++..+.+
T Consensus 471 ~~~~a~~~~ 479 (514)
T 2gw1_A 471 LFEESADLA 479 (514)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 888887644
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1e-21 Score=189.84 Aligned_cols=334 Identities=15% Similarity=0.111 Sum_probs=231.3
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhh
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 155 (499)
+...+..+...+.+.|++++|...|+.+. +.+..+|..+..++...|++++|++.|+++.+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 89 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--------------- 89 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------
Confidence 44445555555555555555555555443 123445555555555555555555555555432
Q ss_pred ccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC---h---HhHHHHHHHHHh
Q 010837 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN---V---ICSTSMISGFMS 229 (499)
Q Consensus 156 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~ 229 (499)
+ +.+...+..+..+|.+.|++++|.+.|+++.+.+ . ..+..++..+..
T Consensus 90 -------------------------~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 90 -------------------------K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp -------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 2 2334556667777777788888877777775532 2 455555444332
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.+.+..+...+ ..|++++|...++.+.+... .+...+..+..+|.+.|++++|...|++
T Consensus 144 ~~~~~~a~~~~--------------------~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 144 QRLRSQALNAF--------------------GSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp HHHHHHHHHHH--------------------HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred HHHHHHHHHHH--------------------HcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22222222211 12666677777777766543 3567788889999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHcccCcHHHHHHHHH
Q 010837 310 MQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA------------LSACGHAGLVDKGREIFE 374 (499)
Q Consensus 310 ~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l------------l~~~~~~~~~~~a~~~~~ 374 (499)
+.+ .+..+|..++..|...|++++|...|+++.+.. +.+...+..+ ..+|.+.|++++|...|+
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 864 477889999999999999999999999998752 3334444444 788889999999999999
Q ss_pred HchHhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 375 SMERDYSMKPK-----MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 375 ~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
.+.+. .|+ ...+..+..++.+.|++++|++.++++.. +.+..+|..+..+|...|++++|...++++++.
T Consensus 282 ~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 282 SVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99843 453 44788889999999999999999998775 457889999999999999999999999999998
Q ss_pred CCCCCCchhHHHHHH------------HHhcC-----ChHHHHHHHHHH
Q 010837 448 NANDRPGAYVALSNT------------LAAAG-----KWDSVTELREKM 479 (499)
Q Consensus 448 ~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~ 479 (499)
.|.. ..++..+..+ |...| +.+++.+.++++
T Consensus 359 ~p~~-~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 359 NEND-QQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp SSSC-HHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred Ccch-HHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 8887 7777777743 44445 566777777763
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.8e-22 Score=198.36 Aligned_cols=422 Identities=10% Similarity=-0.012 Sum_probs=275.2
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 120 (499)
....+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..+|.+.|++++|++.|+++. +.+..+|..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45667888889999999999999999999987 5688999999999999999999999999876 3467889999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcC--CCCchhHHHHHHHHHHh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD--VKADDVLYTALVDSYVK 198 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 198 (499)
+...|++++|++.|+.+.. .|+.... .+..+ ...+....+...++.+.+.. ..+........+..+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~---~~~~~~~--~~~~~-----~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL---NGDFDGA--SIEPM-----LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC----------------CH-----HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhc---CCCCChH--HHHHH-----HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 9999999999999974422 3332211 12222 22333455666666664321 01111111223334555
Q ss_pred CCChhHHHHHHHhccCCChH---hHHHHHHHHHhC--------CCHHHHHHHHHhcCC--CCh-h-------hHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEKNVI---CSTSMISGFMSQ--------GFVEDAEEIFRKTVE--KDI-V-------VYNAMIEG 257 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~a~~~~~~~~~--~~~-~-------~~~~ll~~ 257 (499)
..+.+.+...+......+.. ....+...+... |++++|..+|+++.+ |+. . .+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 56666666555555443221 223333222222 367777777777653 321 1 22222233
Q ss_pred HhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHH
Q 010837 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQA 334 (499)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a 334 (499)
+... ++.++|...++.+.+.. |+...+..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|
T Consensus 253 ~~~~-~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLK-NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc-ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3333 66777777777777754 3356677777777777888888887777653 3566777777777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
...+++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++..
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88887777653 3345667777777777788888888887777331 22456677777777788888888877777654
Q ss_pred ----C----CCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 415 ----K----PNSDVWAALLSSCRLH----------DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 415 ----~----~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
. .....+..+...+... |++++|...++++.+..|.. ..++..++.+|.+.|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS-EQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHHHH
Confidence 1 1122344445556666 77888888888887777766 677777888888888888888887
Q ss_pred HHHHhCC
Q 010837 477 EKMKLRG 483 (499)
Q Consensus 477 ~~~~~~~ 483 (499)
++..+..
T Consensus 486 ~~al~~~ 492 (537)
T 3fp2_A 486 EDSAILA 492 (537)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 7776644
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=6.8e-22 Score=191.07 Aligned_cols=373 Identities=10% Similarity=0.036 Sum_probs=241.6
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
+|.+...+..+...+.+.|++++|..+|+.+.+.. +.+...+..+..++...|++++|...|+++.+ .+..+|..+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 100 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46678889999999999999999999999999875 56789999999999999999999999998763 467789999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCCh----hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDG----YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (499)
...|.+.|++++|.+.|+++.+. .|+. ..+..+...+ ....+..+.
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~----------------------------~~~~~~~~a 150 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSD----------------------------EMQRLRSQA 150 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHH----------------------------HHHHHHHHH
Confidence 99999999999999999999875 4543 3444443322 011233456
Q ss_pred HHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
..+...|++++|++.|+++.+ .+..++..++..|.+.|++++|.+.|+++. ..+..++..+...+... |+.++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL-GDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHH
Confidence 667788888888888888754 356778888888888888888888887765 12334444444444333 44445
Q ss_pred HHHHHHHHHHcccCCCch-hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010837 268 ALEVHCQLIKNVFFEDVK-LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (499)
|...++.+.+.. |+.. .+..+.. . + ....+..+...+...|++++|...|+++.+.
T Consensus 230 A~~~~~~~~~~~--p~~~~~~~~~~~-~---~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-- 286 (450)
T 2y4t_A 230 SLSEVRECLKLD--QDHKRCFAHYKQ-V---K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKT-- 286 (450)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHH-H---H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhC--CChHHHHHHHHH-H---H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 555555444332 2211 1111100 0 0 0001122256666667777777777776663
Q ss_pred CCC-----HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CH
Q 010837 347 QPN-----YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NS 418 (499)
Q Consensus 347 ~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~ 418 (499)
.|+ ...+..+..++.+.|++++|...++.+.+. .| +...|..+..+|...|++++|.+.|+++.+ .| +.
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 333 235666666677777777777777776622 33 456667777777777777777777776655 23 34
Q ss_pred HHHHHHHHH------------HhhcC-----CHHHHHHHHHH-HHhcCCCCCC---------chhHHHHHHHHhcCChHH
Q 010837 419 DVWAALLSS------------CRLHD-----DVEMANIAANE-IFKLNANDRP---------GAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 419 ~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~ 471 (499)
..+..+..+ |...| +.+++.+.+++ ..+..|+..+ ..+..+..+|...|+.+.
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 444444422 33333 55677777776 5555554311 145556666666655443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-21 Score=192.87 Aligned_cols=407 Identities=9% Similarity=-0.046 Sum_probs=292.1
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
|+...+..+..++...|++++|...++.+.+.+ +.+...+..+..++.+.|++++|...|+.+.. .+......++.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 477889999999999999999999999999986 56778999999999999999999999998752 34444444444
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC---------CCchhHHH
Q 010837 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV---------KADDVLYT 190 (499)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~ 190 (499)
.+........+.+.+..+...+..|+...+..-.... ...........+...+..... +.+...+.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK-----DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190 (514)
T ss_dssp HHHHHHHHHHHTTC--------------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH-----hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHH
Confidence 4444333333333333332222222221111111000 001111111111111111110 22244555
Q ss_pred HHHHHHHh---CCChhHHHHHHHhccC----------------C-ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh
Q 010837 191 ALVDSYVK---GGKTSYARIVFDMMLE----------------K-NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI 248 (499)
Q Consensus 191 ~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~ 248 (499)
.+...+.. .|++++|+..|+++.+ + +..++..+...+...|++++|...|+++. .|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~ 270 (514)
T 2gw1_A 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270 (514)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccH
Confidence 55555554 8999999999988765 2 35678888999999999999999999886 4555
Q ss_pred hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHH
Q 010837 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGY 325 (499)
Q Consensus 249 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 325 (499)
..+..+...+... |+.++|...++.+.+... .+...+..+...|...|++++|...|+++.+ .+...+..+...+
T Consensus 271 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 271 NSYIYMALIMADR-NDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHTS-SCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 5555555666555 888899999999988653 3567888899999999999999999998764 3667889999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHh---
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGR--- 398 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~--- 398 (499)
...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.....-.++ ...+..+...+..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998763 445678888999999999999999999998854222222 3488999999999
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 399 AGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
.|++++|.+.++++.. +.+..++..+...+...|++++|.+.++++.+..+.. ...+..+
T Consensus 428 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~ 489 (514)
T 2gw1_A 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAI 489 (514)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHH
Confidence 9999999999998876 4567889999999999999999999999999998876 5554443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.1e-19 Score=179.84 Aligned_cols=389 Identities=12% Similarity=0.043 Sum_probs=284.5
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhh
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 155 (499)
....+..+...+.+.|++++|...|+++. +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34567778888888899999888888765 3467788888888888899999999998888764 3345566666666
Q ss_pred ccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC------hHhHHHHHHHHHh
Q 010837 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN------VICSTSMISGFMS 229 (499)
Q Consensus 156 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~ 229 (499)
+ ...++.+.|...++.+ . ..|+. ....+..+...+....|...++.+...+ .......+..+..
T Consensus 103 ~-----~~~g~~~~A~~~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 103 N-----ESLGNFTDAMFDLSVL-S--LNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp H-----HHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred H-----HHcCCHHHHHHHHHHH-h--cCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 6 7777888888877532 2 22222 2223344555556677788887775531 1223445555666
Q ss_pred CCCHHHHHHHHHhcCCCChh---hHHHHHHHHhcCh-------hhHHHHHHHHHHHHHcccCCC------chhHHHHHHH
Q 010837 230 QGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISI-------ETARKALEVHCQLIKNVFFED------VKLGSALVDM 293 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 293 (499)
..+.+.+...+......+.. ....+...+.... +.+++|..+++.+.+...... ...+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 77777777766665543332 2333333322222 477888889988887654321 2246677788
Q ss_pred HHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
+...|++++|...|+++.+ |+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|..
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 8999999999999999874 667788889999999999999999999998864 4567889999999999999999999
Q ss_pred HHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 372 IFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 372 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.++++.+. .| +...+..+...|...|++++|.+.++++.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 332 ~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 332 DFQKAQSL---NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHH---CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999843 34 567889999999999999999999998876 4557789999999999999999999999999876
Q ss_pred CCCCCch------hHHHHHHHHhc----------CChHHHHHHHHHHHhCC
Q 010837 449 ANDRPGA------YVALSNTLAAA----------GKWDSVTELREKMKLRG 483 (499)
Q Consensus 449 ~~~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 483 (499)
+.. ... +..++.++.+. |++++|...+++..+..
T Consensus 409 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 409 EVQ-EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHC-SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred Ccc-hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 554 222 34556778888 99999999999998753
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=4.2e-18 Score=158.96 Aligned_cols=304 Identities=12% Similarity=0.083 Sum_probs=169.1
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
++..+..+...+...|++++|++.|+++.+.. | .+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p---------------------------------------~~~~~~ 40 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--P---------------------------------------DNYIAY 40 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---------------------------------------TCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c---------------------------------------ccHHHH
Confidence 35567777888888888888888888877642 2 123344
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh-----hhHHHHHHHHhcC
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-----VVYNAMIEGYSIS 261 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~~ 261 (499)
..+...+...|++++|.+.|+++.+ .+...|..+...+...|++++|.+.|++..+.+. ......+..+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--- 117 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA--- 117 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH---
Confidence 5555556666666666666666543 2445666666666666777777666666653211 1111111000
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
.. ...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+
T Consensus 118 ----~~----------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 177 (359)
T 3ieg_A 118 ----DE----------------MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177 (359)
T ss_dssp ----HH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HH----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00 00112234445556666666666655542 24455555566666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHH------------HHHHHHHhcCCHHHH
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYA------------CMVDLLGRAGSLEQA 405 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~------------~l~~~~~~~~~~~~a 405 (499)
+++.+.. +.+..++..+...+...|++++|...++...+. .| +...+. .+...+.+.|++++|
T Consensus 178 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 178 KAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp HHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6655542 334555555566666666666666666665522 22 222221 224446666666666
Q ss_pred HHHHHhCCC-CCC-H----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 406 LKFVLEMPE-KPN-S----DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 406 ~~~~~~~~~-~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.+.++++.. .|+ . ..+..+...+...|++++|.+.++++.+..|.. +.++..++.+|.+.|++++|.+.+++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 254 TSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN-VNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665554 222 1 223345556666666666666666666665554 566666666666666666666666666
Q ss_pred HhC
Q 010837 480 KLR 482 (499)
Q Consensus 480 ~~~ 482 (499)
.+.
T Consensus 333 ~~~ 335 (359)
T 3ieg_A 333 QEH 335 (359)
T ss_dssp HTT
T ss_pred Hhc
Confidence 553
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=3.1e-18 Score=159.81 Aligned_cols=267 Identities=13% Similarity=0.048 Sum_probs=195.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcCh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 262 (499)
...+..+...+...|++++|++.|+++.+ .+..++..+...+...|++++|...|+++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~------------------ 64 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI------------------ 64 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------
Confidence 34555666666777777777777766643 245566666666666666666666665543
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C----ChhHHHHH------------HHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K----NVFTWTSM------------IDG 324 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l------------~~~ 324 (499)
+... .+...+..+..+|...|++++|...|+++.+ | +...+..+ ...
T Consensus 65 --------------~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 129 (359)
T 3ieg_A 65 --------------ALKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129 (359)
T ss_dssp --------------HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------HhCC-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 1334555666667777777777777776654 2 22233333 578
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.+ ..| +...+..+...+...|+++
T Consensus 130 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 130 AFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK---LKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999998863 55778899999999999999999999999983 345 7788999999999999999
Q ss_pred HHHHHHHhCCC-CC-CHHHHH------------HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC----chhHHHHHHHHh
Q 010837 404 QALKFVLEMPE-KP-NSDVWA------------ALLSSCRLHDDVEMANIAANEIFKLNANDRP----GAYVALSNTLAA 465 (499)
Q Consensus 404 ~a~~~~~~~~~-~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 465 (499)
+|.+.|+++.. .| +...+. .+...+...|++++|...++++.+..+.. . ..+..++.++.+
T Consensus 206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~ 284 (359)
T 3ieg_A 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV-AEYTVRSKERICHCFSK 284 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHH
Confidence 99999998876 23 334333 23667899999999999999999988775 3 235568899999
Q ss_pred cCChHHHHHHHHHHHhCCCccCccccc
Q 010837 466 AGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
.|++++|.+.+++..+. .|+....|
T Consensus 285 ~~~~~~A~~~~~~~~~~--~~~~~~~~ 309 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQM--EPDNVNAL 309 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CcccHHHH
Confidence 99999999999999875 35444333
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1e-16 Score=157.93 Aligned_cols=211 Identities=9% Similarity=0.078 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHHHHh-------cCChH-------HHHHHHHhcCC---C-ChhHHHHHHHHHHh
Q 010837 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAK-------CGKID-------DARRVFDHMQQ---K-NVFTWTSMIDGYGK 327 (499)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 327 (499)
+.+..++++.+...+ .+...|...+..+.+ .|+++ +|..+|++..+ | +...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 367778888887643 356788888887775 79987 89999999874 3 57789999999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH-HHhcCCHH
Q 010837 328 NGNPNQALELFCMMQECCVQPN-Y-VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL-LGRAGSLE 403 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~~ 403 (499)
.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+. .| +...|...+.. +...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChh
Confidence 99999999999999984 554 2 57888888888999999999999999832 34 33334333222 34689999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND---RPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|..+|++..+ +.+...|..++..+.+.|+.++|..+|++++...+.+ ....|...+....+.|+.+.+.++.++
T Consensus 409 ~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 409 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998876 3468899999999999999999999999999986544 123788888988999999999999998
Q ss_pred HHhC
Q 010837 479 MKLR 482 (499)
Q Consensus 479 ~~~~ 482 (499)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=7.4e-19 Score=161.66 Aligned_cols=282 Identities=11% Similarity=0.067 Sum_probs=79.4
Q ss_pred CChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHH
Q 010837 94 GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173 (499)
Q Consensus 94 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~ 173 (499)
|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+ .+|..+|..++.++ ...|+++.+..+
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~a-----e~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAA-----NTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHH-----HhCCCHHHHHHH
Confidence 4444444444444222 2444444444444444444444432 12333444444444 344444444443
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 010837 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253 (499)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 253 (499)
++..++. .+++.+.+.++.+|.+.|+++++.++++. ++..+|+.+...|...|.+++|..+|..+ ..|..
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~ 153 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGR 153 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHH
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHH
Confidence 3333331 22234444444445555554444444432 33344444555555555555555555443 23444
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhH
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 333 (499)
+..++.+. |++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 154 LA~~L~~L-g~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 154 LASTLVHL-GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHh-ccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 44444444 4444444444444 144555555555555555555555444433 222223345555555566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHccc--CcHHHHHHHHHHchHhcCCCC------ChhHHHHHHHHHHhcCCHHHH
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHA--GLVDKGREIFESMERDYSMKP------KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~~~~~~a 405 (499)
|..+++...... +.....|+.+..+|++- +++.+..+.|. .+.+++| +...|..++-.|..-++++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 655555554432 23333444443333332 22333333322 1223333 234455555556666666655
Q ss_pred HHHHH
Q 010837 406 LKFVL 410 (499)
Q Consensus 406 ~~~~~ 410 (499)
....-
T Consensus 302 ~~tm~ 306 (449)
T 1b89_A 302 IITMM 306 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=1.5e-16 Score=155.18 Aligned_cols=370 Identities=12% Similarity=0.003 Sum_probs=268.8
Q ss_pred ChHHHHHHHHHHHc----CCChhHHHHHhccCCC-CChHHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCChhhH
Q 010837 79 NTNISIKLLILHLK----CGALKYAGQMFDELPQ-RTLSAYNYMIAGYLK----NGQVEESLSLVRKLVSSGERPDGYTF 149 (499)
Q Consensus 79 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 149 (499)
+...+..+...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|.+.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 55666666666666 6777888877776543 456677777777777 777888888888777654 34444
Q ss_pred HHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh----CCChhHHHHHHHhccCC-ChHhHHHHH
Q 010837 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK----GGKTSYARIVFDMMLEK-NVICSTSMI 224 (499)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~ 224 (499)
..+-..+. .+....++.+.|...++...+.| +...+..|...|.. .+++++|++.|++..+. +...+..+.
T Consensus 115 ~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYH-EGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444441 11123567777888887777765 45566677777776 67888888888877553 566777777
Q ss_pred HHHHh----CCCHHHHHHHHHhcCCC-ChhhHHHHHHHHhc---ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 225 SGFMS----QGFVEDAEEIFRKTVEK-DIVVYNAMIEGYSI---SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 225 ~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
..|.. .++.++|.++|++..+. +...+..+-..+.. ..++.++|..+++...+.| +...+..+...|..
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 77777 78888888888877643 44444444444443 2467788888888887764 34556667777777
Q ss_pred ----cCChHHHHHHHHhcCC-CChhHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC--
Q 010837 297 ----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKN-----GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG-- 364 (499)
Q Consensus 297 ----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-- 364 (499)
.++.++|...|++..+ .+...+..+...|... ++.++|...|++..+.| +...+..+...|...|
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSE 344 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCc
Confidence 8899999999998765 4667778888888887 89999999999998865 4556666776776655
Q ss_pred -cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHH
Q 010837 365 -LVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVE 435 (499)
Q Consensus 365 -~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 435 (499)
+.++|.++|++..+. .+...+..|...|.. .+++++|.+.|++..+..+...+..|...|.. .++.+
T Consensus 345 ~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred ccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 889999999998843 356778888888888 89999999999998877788888999999887 89999
Q ss_pred HHHHHHHHHHhcCCCC--CCchhHHHHHHHHh
Q 010837 436 MANIAANEIFKLNAND--RPGAYVALSNTLAA 465 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 465 (499)
+|...|+++.+.++.+ ++.....+...+.+
T Consensus 421 ~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 421 QAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999988541 14455555554443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=6.2e-18 Score=155.87 Aligned_cols=285 Identities=12% Similarity=0.019 Sum_probs=198.0
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHH
Q 010837 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMI 255 (499)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll 255 (499)
.+.+...+..+...+...|++++|.++|+++.+. +...+..++..+...|++++|...++++. .| +...+..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 3456667777888888889999999888887543 45566777788888888888888888776 33 344555555
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 332 (499)
..+...++..++|...++.+.+... .+...+..+...+...|++++|...|+++.+ .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 5555552277777777777776543 2455677777778888888888887777654 24456666777777788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC-------CCCChhHHHHHHHHHHhcCCHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS-------MKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
+|.+.+++..+.. +.+...+..+...+...|++++|...++++.+... .+....++..+..+|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888777653 44566777777777778888888887777764321 022345677777777778888888
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-HhcCCh
Q 010837 406 LKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL-AAAGKW 469 (499)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 469 (499)
.+.++++.+ +.+...+..+...+...|++++|.+.++++.+..|.. ...+..+..++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHHHHHHhCch
Confidence 877777665 3456677777777777788888888888777777765 66777777776 345543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-17 Score=154.24 Aligned_cols=269 Identities=13% Similarity=0.078 Sum_probs=226.0
Q ss_pred CChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHH
Q 010837 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291 (499)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (499)
.+...+..++..+...|++++|.++|+++. .| +...+..+...+... ++.++|...++.+.+... .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVEL-NKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHh-hhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 366678888999999999999999999987 34 334454455555444 889999999999998653 3677888899
Q ss_pred HHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 292 DMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 292 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999875 356789999999999999999999999998864 334567777889999999999
Q ss_pred HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHhhcCCHH
Q 010837 368 KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-----------KPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~ 435 (499)
+|...++++. ...| +...+..+...+...|++++|...++++.. +....++..+...+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 3345 678899999999999999999999987764 233578999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccc
Q 010837 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
+|...++++.+..+.. ..++..++.+|.+.|++++|.+.+++..+. .|+....|
T Consensus 254 ~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 307 (330)
T 3hym_B 254 EALDYHRQALVLIPQN-ASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSV 307 (330)
T ss_dssp HHHHHHHHHHHHSTTC-SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHH
T ss_pred HHHHHHHHHHhhCccc-hHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHH
Confidence 9999999999999887 899999999999999999999999988664 45544433
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1.4e-15 Score=148.24 Aligned_cols=358 Identities=13% Similarity=0.016 Sum_probs=291.3
Q ss_pred CCChHHHHHHHHHHHh----CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC
Q 010837 108 QRTLSAYNYMIAGYLK----NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183 (499)
Q Consensus 108 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (499)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. +....++.+.|...++...+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~-g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMN-GEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHCC--
Confidence 4577788888888888 899999999999998865 45555555555521 1233788999999999998876
Q ss_pred CchhHHHHHHHHHHh----CCChhHHHHHHHhccCC-ChHhHHHHHHHHHh----CCCHHHHHHHHHhcCCC-ChhhHHH
Q 010837 184 ADDVLYTALVDSYVK----GGKTSYARIVFDMMLEK-NVICSTSMISGFMS----QGFVEDAEEIFRKTVEK-DIVVYNA 253 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~ 253 (499)
+...+..|...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|.+.|++..+. +...+..
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 66777788888888 88999999999998665 67788888888887 88999999999988744 5555555
Q ss_pred HHHHHhc---ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh----cCChHHHHHHHHhcCC-CChhHHHHHHHHH
Q 010837 254 MIEGYSI---SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGY 325 (499)
Q Consensus 254 ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~ 325 (499)
+-..+.. ..++.++|..+++...+.| +...+..+...|.. .+++++|..+|++..+ .+...+..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555544 1478899999999998875 45667778888886 7899999999998765 4677788888888
Q ss_pred Hh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc-----CcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 326 GK----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA-----GLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 326 ~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.. .++.++|.+.|++..+.| +...+..+...|... ++.++|...|++..+. + +...+..|...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHH
Confidence 87 899999999999998764 455666777777766 8999999999999843 3 445677788888
Q ss_pred HhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----
Q 010837 397 GRAG---SLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA---- 465 (499)
Q Consensus 397 ~~~~---~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 465 (499)
...| ++++|+++|++..+..+...+..|...|.. .+++++|.+.++++.+.+. +..+..+..+|..
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~---~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL---SAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSS
T ss_pred HhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCC
Confidence 7766 889999999998887788999999999988 8999999999999998762 6789999999998
Q ss_pred cCChHHHHHHHHHHHhCCCc
Q 010837 466 AGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+++++|...+++..+.+..
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999987743
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=4.1e-16 Score=140.38 Aligned_cols=270 Identities=10% Similarity=-0.001 Sum_probs=212.5
Q ss_pred HHHHhCCChhHHHHHHHhccCCC----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKN----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 269 (499)
+-....|++..|+..++.....+ ......+.++|...|++++|+..++....|+..++..+...+... ++.++|.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~-~~~~~A~ 85 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASH-SRRDAIV 85 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCS-TTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCC-CcHHHHH
Confidence 34567899999999998876643 235566789999999999999988765444555566666555555 8889999
Q ss_pred HHHHHHHHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 270 EVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 270 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
+.++.+...+..|+ ...+..+..++.+.|++++|.+.+++ ..+...+..++..+.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 99999998875554 55667778899999999999999998 5678899999999999999999999999998863 5
Q ss_pred CHHHH---HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 349 NYVTF---LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 349 ~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.. +.+..++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 53311 22334455669999999999999954 234788899999999999999999999999876 457789999
Q ss_pred HHHHHhhcCCHHH-HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 424 LLSSCRLHDDVEM-ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 424 l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
++..+...|+.++ +.++++++.+.+|.. +. +.....+.+.++++..-
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~-~~----~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSH-PF----IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTC-HH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCC-hH----HHHHHHHHHHHHHHHHH
Confidence 9999999999875 678999999999887 33 33445566666665543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=1.8e-17 Score=155.37 Aligned_cols=276 Identities=12% Similarity=0.013 Sum_probs=202.1
Q ss_pred hCCChhHHHH-HHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHH
Q 010837 198 KGGKTSYARI-VFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 198 ~~g~~~~A~~-~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~ 266 (499)
-.|++++|.+ .|++..+. +...+..+...+.+.|++++|...|+++. .| +...+..+...+... |+.+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-cCHH
Confidence 3466777776 66654331 23456677777777777777777777765 23 334455555555444 6777
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHH---------------HHHHHHhC
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTS---------------MIDGYGKN 328 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~---------------l~~~~~~~ 328 (499)
+|...++.+.+... .+..++..+..+|...|++++|...|+++.+. +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 77777777776643 35667777888888888888888888877642 1122211 13333488
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
|++++|...++++.+..... +..++..+...+...|++++|...++++... .| +...+..+...+...|++++|+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998863221 5788999999999999999999999999843 34 5788999999999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC----------CCchhHHHHHHHHhcCChHHHHH
Q 010837 407 KFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND----------RPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 407 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
+.|+++.. +.+..++..+..++...|++++|...++++.+..+.. ...+|..++.+|.+.|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 99999876 4567899999999999999999999999999876654 25789999999999999999998
Q ss_pred HHHH
Q 010837 475 LREK 478 (499)
Q Consensus 475 ~~~~ 478 (499)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8764
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=7.8e-15 Score=150.49 Aligned_cols=384 Identities=9% Similarity=0.064 Sum_probs=284.0
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhC--CCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 118 (499)
...+++-....+++|...|.+.+|.++++++.-.+ +.-+....+.++....+. +..+..+..+.+..-+ ...+.
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA 1056 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIA 1056 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHH
Confidence 34567777888999999999999999999998332 113445666666666655 4455555555554333 34477
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (499)
..+...|.+++|..+|++.. -.....+.++ ...++++.|.++.++. -+..+|..+..++..
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi--------e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLI--------EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH--------HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh
Confidence 88888999999999999862 2223334444 2445677777777644 346788999999999
Q ss_pred CCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 276 (499)
.|++++|++.|.+. .|...|..++..+.+.|++++|.++|.... .++......+..++++. +..++...+.
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl-~rleele~fI---- 1190 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT-NRLAELEEFI---- 1190 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhh-cCHHHHHHHH----
Confidence 99999999999764 678888999999999999999999997655 23333344577777776 6665433332
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
+ .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|.+.+++. .+..+|..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 2 345566777999999999999999999985 58999999999999999999999876 456889989
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc--C
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH--D 432 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~--~ 432 (499)
-.+|...|++..|....-.+ ..+...+..++..|.+.|.+++|+++++.... +.....|+-|...+.+. +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 99999999999998866432 24556678999999999999999999998876 33445666666666554 4
Q ss_pred CHHHHHHHHHHHHhcCC----CCCCchhHHHHHHHHhcCChHHHHH
Q 010837 433 DVEMANIAANEIFKLNA----NDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
+..++.+.|..-....+ -.+...|..++..|.+.|+++.|..
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55555555543322211 0125779999999999999999984
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.1e-15 Score=148.52 Aligned_cols=405 Identities=10% Similarity=0.021 Sum_probs=285.8
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMI 118 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 118 (499)
+|-+...|..++.. ...|+++.|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++... |++..|...+
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 46678889888884 77899999999999999874 66788999999999999999999999999774 7777887777
Q ss_pred HHH-HhCCChhhHHH----HHHHHHHc-CCCCC-hhhHHHHhhhcccccc----CCcCcchhHHHHHHHHHHcCCCCchh
Q 010837 119 AGY-LKNGQVEESLS----LVRKLVSS-GERPD-GYTFSMILKASTCCRS----NVPLPRNLGRMVHAQILKCDVKADDV 187 (499)
Q Consensus 119 ~~~-~~~g~~~~a~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~ 187 (499)
... ...|+.++|.+ +|+..... |..|+ ...|...+........ ...++.+.+..+++..++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 45688887765 77766553 55554 4455555443310000 12567889999999988731111123
Q ss_pred HHHHHHHHH-------------HhCCChhHHHHHHHhc------cC-------CC--------hHhHHHHHHHHHhC---
Q 010837 188 LYTALVDSY-------------VKGGKTSYARIVFDMM------LE-------KN--------VICSTSMISGFMSQ--- 230 (499)
Q Consensus 188 ~~~~l~~~~-------------~~~g~~~~A~~~~~~~------~~-------~~--------~~~~~~l~~~~~~~--- 230 (499)
.|....... .+.++++.|..+++.+ .+ ++ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443332211 1345677777766651 11 11 24555555433322
Q ss_pred -CCH----HHHHHHHHhcC--CC-ChhhHHHHHHHHhc------ChhhHH-------HHHHHHHHHHHcccCCCchhHHH
Q 010837 231 -GFV----EDAEEIFRKTV--EK-DIVVYNAMIEGYSI------SIETAR-------KALEVHCQLIKNVFFEDVKLGSA 289 (499)
Q Consensus 231 -g~~----~~a~~~~~~~~--~~-~~~~~~~ll~~~~~------~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 289 (499)
++. +.+..+|++.. .| +...|......+.. ..|+.+ +|..+++...+.-.+.+...+..
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 232 36777888876 33 55566666665543 135554 88999999886323345778889
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C-Ch-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHcccC
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ--K-NV-FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS-ACGHAG 364 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~ 364 (499)
++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..+.. +.+...|..... .+...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcC
Confidence 99999999999999999999874 3 33 478889999999999999999999998753 223333332222 233589
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----C--CHHHHHHHHHHHhhcCCHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK----P--NSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.... | ....|...+......|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999998543 226788999999999999999999999998652 2 2448888888888999999999
Q ss_pred HHHHHHHhcCCC
Q 010837 439 IAANEIFKLNAN 450 (499)
Q Consensus 439 ~~~~~~~~~~~~ 450 (499)
.+.+++.+..|.
T Consensus 484 ~~~~r~~~~~p~ 495 (530)
T 2ooe_A 484 KVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHTHH
T ss_pred HHHHHHHHHCch
Confidence 999999887763
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=5.6e-17 Score=152.04 Aligned_cols=286 Identities=11% Similarity=0.061 Sum_probs=150.3
Q ss_pred cCCChhHHHH-HhccCCC--C-----ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCC
Q 010837 92 KCGALKYAGQ-MFDELPQ--R-----TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163 (499)
Q Consensus 92 ~~~~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 163 (499)
-.|++++|.. .|++... + +...+..+...+.+.|++++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3467777776 6664432 1 23456667777777777777777777776542
Q ss_pred cCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHH
Q 010837 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIF 240 (499)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (499)
+.+...+..+..++...|++++|++.|+++.+ .+..++..+...+...|++++|.+.|
T Consensus 95 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 95 -------------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22334455566666777777777777766643 24566777777777777777777777
Q ss_pred HhcC--CCChh-hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C--
Q 010837 241 RKTV--EKDIV-VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-- 313 (499)
Q Consensus 241 ~~~~--~~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-- 313 (499)
+++. .|+.. .+..... .. +. ..+ ...+..+...+ ..|++++|...|+++.+ |
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~---~~---------------~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEE-GA---GG---------------AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHTSTTTGGGCC-----------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHhCcCcHHHHHHHHH-Hh---hh---------------hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc
Confidence 6665 22211 1110000 00 00 000 00001111222 55555555555555442 2
Q ss_pred -ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHH
Q 010837 314 -NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYAC 391 (499)
Q Consensus 314 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 391 (499)
+..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+. .| +...+..
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~ 290 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYN 290 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHH
Confidence 24455555666666666666666666655532 334455566666666666666666666665522 23 4455666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPN-----------SDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
+..+|.+.|++++|...|+++.. +.+ ..+|..+..++...|++++|..++++
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 66666666666666666655544 111 45666666666666666666666553
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=3.4e-17 Score=153.43 Aligned_cols=256 Identities=12% Similarity=-0.000 Sum_probs=188.7
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHH
Q 010837 218 ICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294 (499)
Q Consensus 218 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (499)
..|..+...+.+.|++++|.+.|+++. .| +...+..+...+... |+.++|...++.+.+... .+...+..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 345566666666666666666666654 22 334444444444444 566666666666666532 2466777888888
Q ss_pred HhcCChHHHHHHHHhcCCCC-------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 010837 295 AKCGKIDDARRVFDHMQQKN-------------VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PNYVTFLGALSAC 360 (499)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~ 360 (499)
...|++++|...|+++.+.+ ...+..+...+...|++++|..+++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 88899999998888876421 223344578888999999999999999886422 1688899999999
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
...|++++|...|+++.+. .| +..+|..+..+|...|++++|++.|+++.. +.+..++..+..+|...|++++|
T Consensus 224 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999843 34 678899999999999999999999998876 34588999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------CCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 438 NIAANEIFKLNAND-----------RPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 438 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
...++++++..+.. +..+|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999876552 257899999999999999999887664
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.3e-16 Score=147.74 Aligned_cols=225 Identities=12% Similarity=0.103 Sum_probs=129.5
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----------------------------------------p~~~~~~ 102 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----------------------------------------PGDAEAW 102 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------------------------TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------------------------------cCCHHHH
Confidence 45568888888889999999999999887642 2234456
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCC--CCh-hhH----------HH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVE--KDI-VVY----------NA 253 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~----------~~ 253 (499)
..+..+|...|++++|++.|++..+ .+..+|..+...|...|++++|.+.|+++.+ |+. ..+ ..
T Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 103 QFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence 6677777777888888877777644 2466777777888888888888887777652 211 111 11
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCC-CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCC
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNG 329 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 329 (499)
+...+ ...|+.++|...++.+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+..+|...|
T Consensus 183 l~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 183 MSKSP-VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHH-hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 12222 22255555555555555543221 344555555555555555555555555442 23445555555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555431 2234455555555555555555555555554
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=7.5e-16 Score=138.66 Aligned_cols=244 Identities=9% Similarity=0.060 Sum_probs=157.4
Q ss_pred hCCCChhhHHHHHHHHHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHH
Q 010837 56 INSDTPFYGLKIHAHITKTGVKPNT--NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133 (499)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 133 (499)
-..|++..|+...+..... .|+. .....+.++|...|++++|+..++....|+..++..+...+...|+.++|++.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 3456666666655543322 2222 23344556666666666666666554444555566666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 134 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
++++...++.|+ +...+..+...+...|++++|++.+++
T Consensus 88 l~~ll~~~~~P~---------------------------------------~~~~~~~la~~~~~~g~~~~Al~~l~~-- 126 (291)
T 3mkr_A 88 LDREMSRSVDVT---------------------------------------NTTFLLMAASIYFYDQNPDAALRTLHQ-- 126 (291)
T ss_dssp HHHHHHSCCCCS---------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--
T ss_pred HHHHHhcccCCC---------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--
Confidence 666655443333 333445566778899999999999998
Q ss_pred CCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHH---HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHH
Q 010837 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNA---MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288 (499)
Q Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~---ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (499)
..+...+..++..+.+.|++++|.+.|+++. .|+...... ++.. ....+..++|..+++++.+.. +.+...++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l-~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~ 204 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL-AAGGEKLQDAYYIFQEMADKC-SPTLLLLN 204 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHS-CCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhCchHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4578889999999999999999999999887 454322111 1121 223367777777777777763 34566777
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhH-HHHHHHHHHHc
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQ-ALELFCMMQEC 344 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 344 (499)
.+..++.+.|++++|...|+++.+ .+..++..++..+...|+.++ +.++++++.+.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777777777777777777777653 255667777777777777755 45677776663
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=5.7e-16 Score=142.60 Aligned_cols=279 Identities=11% Similarity=0.044 Sum_probs=86.9
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
+.|++++|.++++++ +++.+|..+..++.+.|++++|++.|.+ .+|...|..++..+...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666655 2223666666666666666666666644 24555666666666666666666665555
Q ss_pred HHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC
Q 010837 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216 (499)
Q Consensus 137 m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (499)
.++. .++..+.+.++.++ .+.|++..+.++++ .|+..+|+.+.+.|...|.+++|...|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y-----~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 87 ARKK--ARESYVETELIFAL-----AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHh--CccchhHHHHHHHH-----HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 5442 33455555666666 55555555555553 255556666666666666666666666655
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|... |+++.|...... +...+.....++..|.+
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~-~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDG-KEFRLAQMCGLH-----IVVHADELEELINYYQD 219 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHT-TCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHc-CcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence 35666666666666666666666666 2556666666666555 555555332222 11222223345666666
Q ss_pred cCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHcccCcH
Q 010837 297 CGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQP------NYVTFLGALSACGHAGLV 366 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~ll~~~~~~~~~ 366 (499)
.|++++|..+++....- ....|+-+.-+|++- ++++.++.++...+. +++| +...|..+.-.|.+.+++
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 66666666666665432 334455554444443 233333333322211 1111 223455555556666666
Q ss_pred HHHHH
Q 010837 367 DKGRE 371 (499)
Q Consensus 367 ~~a~~ 371 (499)
+.|..
T Consensus 299 d~A~~ 303 (449)
T 1b89_A 299 DNAII 303 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=8.8e-16 Score=149.11 Aligned_cols=371 Identities=13% Similarity=0.070 Sum_probs=206.8
Q ss_pred CChHHHHHHHHHHHcCCChhHHHHHhccCC------------CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC
Q 010837 78 PNTNISIKLLILHLKCGALKYAGQMFDELP------------QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145 (499)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 145 (499)
.....|+.|...+...|++++|++.|++.. .....+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~---- 124 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC---- 124 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh----
Confidence 345678889999999999999999887642 1245688999999999999999999988876420
Q ss_pred hhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh--CCChhHHHHHHHhccC--C-ChHhH
Q 010837 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK--GGKTSYARIVFDMMLE--K-NVICS 220 (499)
Q Consensus 146 ~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~ 220 (499)
..+ ..... .....++..+..++.. .+++++|++.|++..+ | +...+
T Consensus 125 --------~~~-----~~~~~----------------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 125 --------EKF-----SSPYR----------------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp --------HHS-----CCSSC----------------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred --------Hhc-----ccccc----------------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 000 00000 0111223323222322 3346666666666533 2 33333
Q ss_pred HHHHHH---HHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHH---hcChhhHHHHHHHHHHHHHcccCCCchhHHHHH
Q 010837 221 TSMISG---FMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALV 291 (499)
Q Consensus 221 ~~l~~~---~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 291 (499)
..+..+ +...++.++|++.+++.. .| +...+..+...+ ....+..++|...++...+... .+...+..+.
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg 254 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAA 254 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHH
Confidence 333332 334455566666665544 23 223333222222 2223455567777766665543 2445666677
Q ss_pred HHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHh-------------------CCChhHHHHHHHHHHHcCCCCC
Q 010837 292 DMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGK-------------------NGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
..|.+.|++++|...|+++.+ | +..++..+...|.. .+..++|...+++..+.. +.+
T Consensus 255 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 333 (472)
T 4g1t_A 255 KFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNL 333 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTT
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cch
Confidence 777777777777777777654 2 34455555444432 123567777787776653 334
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCCh--hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM--EHYACMVD-LLGRAGSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
..++..+...+...|++++|...|++..+. ...+.. ..+..+.. .+...|++++|+..|++... .|+......
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-- 410 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-- 410 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--
Confidence 456777888889999999999999988732 322211 12333332 23467899999999887765 444332222
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
....+..++++.++.+|.. +.+|..++.+|...|++++|.+.+++..+.|-....+.+|+.
T Consensus 411 -------~~~~l~~~~~~~l~~~p~~-~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 411 -------MKDKLQKIAKMRLSKNGAD-SEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -------HHHHHHHHHHHHHHHCC-C-TTHHHHHHHHHHHHHHCC------------------------
T ss_pred -------HHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2344566777788888887 899999999999999999999999999988766666677763
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=2.3e-16 Score=145.07 Aligned_cols=258 Identities=9% Similarity=-0.071 Sum_probs=191.5
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+...+..+...+...|++++|.++|+++.+ .+...+..+...+...|++++|.+.|+++.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------- 82 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR----------------- 82 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 334556677777888888888888877744 255667777777777777777777776654
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHH--------------HH-
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSM--------------ID- 323 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~- 323 (499)
+.. +.+...+..+...|...|++++|...++++.+. +...+..+ ..
T Consensus 83 ---------------~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 83 ---------------MLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp ---------------HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred ---------------hcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 211 112334444555566666666666666555431 11122221 22
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .| +...+..+...+...|++
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCH
Confidence 3667788999999999998763 446788889999999999999999999998843 34 577889999999999999
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----------CCchhHHHHHHHHhcCCh
Q 010837 403 EQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----------RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 403 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~ 469 (499)
++|.+.|+++.. +.+..++..+...+...|++++|.+.++++.+..+.. +..++..++.++.+.|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 999999998776 4567889999999999999999999999999988772 367899999999999999
Q ss_pred HHHHHHHHHH
Q 010837 470 DSVTELREKM 479 (499)
Q Consensus 470 ~~A~~~~~~~ 479 (499)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=5.6e-15 Score=135.76 Aligned_cols=192 Identities=9% Similarity=-0.013 Sum_probs=146.8
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 120 (499)
+...+......+...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...|+++. +.+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 55667888889999999999999999999886 5578889999999999999999999999875 3467789999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChh-hHHHH--------------hh-hccccccCCcCcchhHHHHHHHHHHcCCCC
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGY-TFSMI--------------LK-ASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l--------------l~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 184 (499)
+...|++++|++.++++.+.. |+.. .+..+ .. .+ ...++.+.|...++.+.+.. +.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~-~~ 170 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFF-----AAPNEYRECRTLLHAALEMN-PN 170 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCT-----TSHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHH-----HHcccHHHHHHHHHHHHhhC-CC
Confidence 999999999999999998763 3332 22222 11 23 66677777777777777664 34
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
+...+..+...+...|++++|.+.+++..+ .+..+|..+...+...|++++|.+.|++..
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566777777778888888888887777643 245667777777777777777777776654
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=164.66 Aligned_cols=162 Identities=12% Similarity=0.138 Sum_probs=127.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcC-------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQ-------QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (499)
-..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCc-HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhh
Q 010837 356 ALSACGHAGL-VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRL 430 (499)
Q Consensus 356 ll~~~~~~~~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~ 430 (499)
+|.++++.|+ .++|.++|++|. +.|+.||..+|++++....+.+-++.+.++...+.-+ |...+...|.+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 9999999998 478999999999 4599999999999998776654444444433322221 223444556666665
Q ss_pred cC---------CHHHHHHHHHHHH
Q 010837 431 HD---------DVEMANIAANEIF 445 (499)
Q Consensus 431 ~~---------~~~~a~~~~~~~~ 445 (499)
.+ ..++-.+.+++-+
T Consensus 285 d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 285 DGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred CCCCcCccccCCHHHHHHHHHHHH
Confidence 54 2455555555544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=5.4e-13 Score=137.15 Aligned_cols=349 Identities=11% Similarity=0.042 Sum_probs=244.5
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCC-CC-----ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELP-QR-----TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 152 (499)
++.--...+++|...|...+|+++++++. ++ +....+.++.+..+. +..+..+..++.... + ..-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 33344556677777777777777777765 22 224455566666555 445555555544311 1 1113
Q ss_pred hhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCC
Q 010837 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232 (499)
Q Consensus 153 l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (499)
-..+ ...+..++|..+|+... -.....+.++ -..+++++|.++.+++. +..+|..+..++...|+
T Consensus 1056 A~Ia-----i~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1056 ANIA-----ISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHH-----HhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 3333 66777777877777641 1111122222 26677888888887663 46678899999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 010837 233 VEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312 (499)
Q Consensus 233 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (499)
+++|.+.|.+. .|...|..++..+.+. |+++++.+++...++.. +++...+.++.+|++.+++++..... ..
T Consensus 1121 ~kEAIdsYiKA--dD~say~eVa~~~~~l-GkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~ 1192 (1630)
T 1xi4_A 1121 VKEAIDSYIKA--DDPSSYMEVVQAANTS-GNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NG 1192 (1630)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hC
Confidence 99999999775 4555666677777666 88889999998877765 34334445888899998888655443 35
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHH
Q 010837 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392 (499)
Q Consensus 313 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l 392 (499)
++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev 1256 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEV 1256 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHH
Confidence 56677778888999999999999999884 378889999999999999999888764 33678888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc--CChH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA--GKWD 470 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 470 (499)
..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+..++.. ...|..+..+|++. ++..
T Consensus 1257 ~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCCHHHHH
Confidence 888888999999988877644 356677788889999999999999999998887554 77887788887765 3444
Q ss_pred HHHHHHH
Q 010837 471 SVTELRE 477 (499)
Q Consensus 471 ~A~~~~~ 477 (499)
++.+.|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 4444443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=5.5e-15 Score=143.46 Aligned_cols=382 Identities=12% Similarity=-0.035 Sum_probs=226.5
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHh-----C---CCCChHHHHHHHHHHHcCCChhHHHHHhccCCC-----
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKT-----G---VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----- 108 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 108 (499)
......|+.+...+...|++++|++.|++.++. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 445677899999999999999999999987653 1 123457889999999999999999998876531
Q ss_pred ------CChHHHHHHHHHHHh--CCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHH
Q 010837 109 ------RTLSAYNYMIAGYLK--NGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179 (499)
Q Consensus 109 ------~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~ 179 (499)
....+|..+..++.. .+++++|++.|++..+. .|+.. .+..+..++.+ ....+..+.+...++..++
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~--l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYR--LDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH--HHHSCCCCCTHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHhh
Confidence 234567666656555 45799999999999875 45543 33222222100 0344566778888888777
Q ss_pred cCCCCchhHHHHHHHHHHh----CCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-h
Q 010837 180 CDVKADDVLYTALVDSYVK----GGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-V 249 (499)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~ 249 (499)
.. +.+...+..+...+.. .|++++|.+.+++... .+..++..+...|...|++++|.+.|++.. .|+. .
T Consensus 204 l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 282 (472)
T 4g1t_A 204 LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY 282 (472)
T ss_dssp HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH
Confidence 65 4455566666555544 4678899999988744 367788999999999999999999999887 4543 3
Q ss_pred hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010837 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYG 326 (499)
Q Consensus 250 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 326 (499)
.+..+-..+... ... ..... ...........+..+.|...|++..+ .+...+..+...+.
T Consensus 283 ~~~~lg~~y~~~-~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAK-VFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHH-HHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHH
Confidence 333332222110 000 00000 00011111122335667777776553 35567788888888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYV--TFLGALS-ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 403 (499)
..|++++|++.|++..+....+... .+..+.. .....|+.++|+..|++.. .+.|+........ +
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~~---------~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKMK---------D 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHHH---------H
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHHH---------H
Confidence 9999999999998888754333221 1222222 2346788999999988887 3455433222222 2
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
.+.+++++... +.+..+|..+...|...|++++|++.|+++++.++.. +.+...
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~-p~a~~~ 469 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI-PSASSW 469 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcHhhc
Confidence 33334443332 3466788889999999999999999999999887765 444433
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=164.79 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=109.6
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCC-------CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhH
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELP-------QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 149 (499)
..-..+|+++|.+||+.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999997653 589999999999999999999999999999999999999999
Q ss_pred HHHhhhccccccCCcCcc-hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 010837 150 SMILKASTCCRSNVPLPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208 (499)
Q Consensus 150 ~~ll~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (499)
+++|.++ ++.|.. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...++
T Consensus 204 ntLI~gl-----cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCM-----GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHH-----HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHH-----HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999998 666664 78899999999999999999999998877775444443333
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=4.1e-15 Score=127.84 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=158.5
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010837 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357 (499)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 357 (499)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45677788889999999999999999998865 367789999999999999999999999998863 44667888889
Q ss_pred HHHccc-----------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHH
Q 010837 358 SACGHA-----------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAAL 424 (499)
Q Consensus 358 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l 424 (499)
.++... |++++|...+++..+ +.| +...+..+..+|...|++++|+..|+++.+ ..+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 999999999999983 356 677889999999999999999999998764 3678889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
..++...|++++|+..++++++..|.. +..+..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKD-LDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999988 8999999999999999999999988754
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2e-14 Score=127.22 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C-------hhHHHHHHHHHHhCCChh
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N-------VFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~-------~~~~~~l~~~~~~~g~~~ 332 (499)
|++++|...++.+.+.. .+...+..+..+|...|++++|...++++.+ | + ...|..+...+...|+++
T Consensus 19 ~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 19 RQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp TCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence 45555555555555555 5677788888889999999999999988764 2 1 578888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+|...|++..+. .|+. ..+...|++++|...++.+.. ..| +...+..+...+...|++++|.+.|++
T Consensus 97 ~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 97 KTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999884 4553 345566889999999999883 345 567888899999999999999999998
Q ss_pred CCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 412 MPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 412 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.. +.+..++..+...+...|++++|...++++++..+.. ...+..++.+|.+.|++++|.+.+++..+..
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 876 4567889999999999999999999999999998887 8899999999999999999999999887643
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=2.1e-13 Score=130.87 Aligned_cols=378 Identities=10% Similarity=0.022 Sum_probs=207.5
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCCh---hHHHHHhccCCCCChHHHHHHHHHHHhCC-
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL---KYAGQMFDELPQRTLSAYNYMIAGYLKNG- 125 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g- 125 (499)
.+...+.+.|++++|.++|++..+.|. ...+..|...|...|+. ++|...|++..+.++..+..|...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 355666788999999999999988873 33344556666667777 89999999888777777777777666655
Q ss_pred ----ChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 126 ----QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 126 ----~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
++++|++.|++..+.|... .+..+-..+...+ ..... ..+...+....+.| +......|...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~-~~~~~-~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYP-HSFPN-VNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCG-GGCTT-CCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCC-CCCCC-HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 6789999999988876333 4444444442111 11111 33444455444444 34455566666766664
Q ss_pred h----hHHHHHHHhccCCChHhHHHHHHHHHhCC---CHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHH
Q 010837 202 T----SYARIVFDMMLEKNVICSTSMISGFMSQG---FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274 (499)
Q Consensus 202 ~----~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 274 (499)
+ +++..+++.....+...+..+...|...| +.++|++.|++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~-------------------------------- 204 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEA-------------------------------- 204 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------------
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH--------------------------------
Confidence 3 33444455555555556666666666666 55555555544
Q ss_pred HHHcccCCCchhHHHHHHHHHhc----CChHHHHHHHHhcCCCChhHHHHHHHH-H--HhCCChhHHHHHHHHHHHcCCC
Q 010837 275 LIKNVFFEDVKLGSALVDMYAKC----GKIDDARRVFDHMQQKNVFTWTSMIDG-Y--GKNGNPNQALELFCMMQECCVQ 347 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~m~~~~~~ 347 (499)
..+.|. ++...+..|...|... +++++|...|++....++..+..+... + ...+++++|.+.|++..+.|
T Consensus 205 aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 205 GVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 444332 1222223344444333 567777777776663355566666655 3 35677778888887777655
Q ss_pred CCHHHHHHHHHHHcccC-----cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCH
Q 010837 348 PNYVTFLGALSACGHAG-----LVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNS 418 (499)
Q Consensus 348 p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 418 (499)
+...+..+...|. .| ++++|...|++.. .-+...+..|...|.. ..++++|.++|++..+..+.
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 4555555555555 34 7788888877665 2244556666666655 34778888888777765555
Q ss_pred HHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 419 DVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 419 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.....|...|.. ..|.++|..+++...+.|... .......+......++.++|.++.++..+
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~-a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE-ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 566666666653 457888888888887776543 22222222222223355666666665543
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.3e-13 Score=121.65 Aligned_cols=197 Identities=8% Similarity=-0.052 Sum_probs=171.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45677788889999999999999998764 367788899999999999999999999998863 44677888899999
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
...|++++|.++++++.. .+..| +...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999984 23455 567788899999999999999999998776 34678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...++++.+..+.. ...+..++.++.+.|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQN-ARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999988876 7889999999999999999999999998754
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.4e-14 Score=124.36 Aligned_cols=223 Identities=11% Similarity=-0.018 Sum_probs=165.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccC--CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 263 (499)
...+..+...+...|++++|++.|++..+ .+...|..+...+...|++++|.+.+++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------------- 65 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAV------------------- 65 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------
Confidence 34677778888888888888888877633 456677777778888888888877776543
Q ss_pred hHHHHHHHHHHHHHcccC--CC----chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHH
Q 010837 264 TARKALEVHCQLIKNVFF--ED----VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (499)
+.... ++ ..++..+...|.+.|++++|...|+++.+.+.. ...+...|++++|...
T Consensus 66 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 66 -------------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKK 127 (258)
T ss_dssp -------------HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHH
T ss_pred -------------HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHH
Confidence 11110 11 355667777888888888888888877642111 2345666788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 010837 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--K 415 (499)
Q Consensus 338 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 415 (499)
++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|++.|+++.. +
T Consensus 128 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 88887742 3345567778888888899999999999888431 23577888888889999999999999988776 4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.+..+|..+...+...|++++|.+.++++.+..
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 457888888899999999999999999988876
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.2e-13 Score=117.69 Aligned_cols=198 Identities=10% Similarity=-0.023 Sum_probs=169.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 355677788889999999999999998764 357788889999999999999999999998763 4567788889999
Q ss_pred Hccc-CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHH
Q 010837 360 CGHA-GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 360 ~~~~-~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 435 (499)
+... |++++|...++.+.+ .+..| +...+..+..++...|++++|++.++++.. +.+...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 9999 999999999999984 33444 467888899999999999999999998876 345788999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 436 MANIAANEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 436 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+|.+.++++.+..+ .. ...+..+...+...|+.++|..+++.+.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999888 55 7888888899999999999999999987643
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=7.1e-14 Score=122.44 Aligned_cols=198 Identities=11% Similarity=0.102 Sum_probs=152.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3455677778888999999999999998864 366788888999999999999999999988763 446778888889
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
.+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999988432 23677888899999999999999999998776 4567888899999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
|...++++.+..+.. ..++..++.+|.+.|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGH-ADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999988876 7889999999999999999999999988743
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.7e-13 Score=122.49 Aligned_cols=238 Identities=11% Similarity=-0.033 Sum_probs=172.1
Q ss_pred HhCCChhHHHHHHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~ 269 (499)
...|++++|++.|+++.+. +..+|..+...+...|++++|.+.|++..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------------------------- 70 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL------------------------- 70 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-------------------------
Confidence 3456677777777766542 24456666666666666666666665443
Q ss_pred HHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010837 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (499)
+... .+...+..+..+|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.
T Consensus 71 -------~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-- 140 (275)
T 1xnf_A 71 -------AIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-- 140 (275)
T ss_dssp -------HHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred -------HcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 3221 2455667778888888999999999888764 36778888999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C-----CHHH
Q 010837 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-P-----NSDV 420 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----~~~~ 420 (499)
.|+.......+..+...|++++|...++...... +++...+ .++..+...++.++|.+.+++.... | +..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 141 DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 4544444444555567799999999998877442 3343444 4677788888999999999988873 2 2578
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
+..+...+...|++++|...++++++..|.. +.....++...|++++|.+.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 8889999999999999999999999887644 344567788889999988776
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=2.9e-12 Score=114.44 Aligned_cols=223 Identities=12% Similarity=-0.009 Sum_probs=160.7
Q ss_pred ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH
Q 010837 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295 (499)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (499)
+..++..+...+...|++++|.+.|++..+++ +...+..+...|.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~ 49 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------------------------ENSGCFNLGVLYY 49 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------------------CHHHHHHHHHHHH
Confidence 34455566666666666666666665543322 2234445556666
Q ss_pred h----cCChHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----
Q 010837 296 K----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGK----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGH---- 362 (499)
Q Consensus 296 ~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~---- 362 (499)
. .+++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 50 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 50 QGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSS
T ss_pred cCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCc
Confidence 6 7777777777777654 356677777777777 888888888888877754 56677777777777
Q ss_pred cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCH
Q 010837 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDV 434 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 434 (499)
.+++++|...|++..+. + +...+..+...|.. .+++++|++.|++..+..+...+..+...|.. .+++
T Consensus 127 ~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred ccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccH
Confidence 78888888888887732 3 44566677777777 78888888888877765667777788888888 8888
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAA----AGKWDSVTELREKMKLRG 483 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 483 (499)
++|.+.++++.+.++ ...+..+..+|.. .+++++|.+.+++..+.|
T Consensus 203 ~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 203 KEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888887754 5677888888888 888888888888887765
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=1.8e-12 Score=115.76 Aligned_cols=225 Identities=12% Similarity=-0.011 Sum_probs=177.3
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccCC-ChHhHHHHHHHHHh----CCCHHHHHHHHHhcCCCChhhHHHHHHHHh
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMS----QGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 259 (499)
+...+..+...+...|++++|++.|++..++ +..++..+...|.. .+++++|.+.|++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------------- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------------
Confidence 5667888999999999999999999998776 56778888888888 88888888877754321
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh----cCChHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCC
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK----CGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGK----NGN 330 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~ 330 (499)
+ +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++
T Consensus 72 -------------------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 72 -------------------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp -------------------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCC
T ss_pred -------------------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccC
Confidence 1 33445556666777 7888888888887664 366777888888888 889
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH----AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSL 402 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 402 (499)
+++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++
T Consensus 130 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred HHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccH
Confidence 999999999888865 55666777777776 88999999999988833 2 45667788888888 8999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCC
Q 010837 403 EQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 403 ~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++|++.|++..+..+...+..+...|.. .+++++|.+.++++.+.++..
T Consensus 203 ~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 203 KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 9999999888765557788888888888 899999999999998887643
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=6.1e-13 Score=118.67 Aligned_cols=193 Identities=8% Similarity=-0.075 Sum_probs=102.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CCh----hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ--KNV----FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
.+..+..+|...|++++|...++++.+ ++. ..|..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 117 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSY 117 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHH
Confidence 444555555555666666555555443 111 225555556666666666666666655532 2234455556666
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC---
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD--- 433 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--- 433 (499)
|...|++++|...+++.. ...| +...+..+...+...+++++|.+.|+++.+ +.+...+..+...+...|+
T Consensus 118 ~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 118 FYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchh
Confidence 666666666666666655 2233 344455555222333466666666665554 2234555555555555555
Q ss_pred HHHHHHHHHHHHhcC---CCCC----CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 434 VEMANIAANEIFKLN---ANDR----PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
+++|...++++.+.. +.++ ..+|..++..|.+.|++++|.+.+++..+.
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555666665555432 2110 135555666666666666666666666553
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=1.3e-12 Score=125.42 Aligned_cols=190 Identities=9% Similarity=-0.054 Sum_probs=149.8
Q ss_pred CchhHHHHHHHHHhcC---ChHHHHHHHHhcCCC---ChhHHHHHHHHHHhC----CChhHHHHHHHHHHHcCCCCCHHH
Q 010837 283 DVKLGSALVDMYAKCG---KIDDARRVFDHMQQK---NVFTWTSMIDGYGKN----GNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
++..+..|...|.+.| +.++|...|++..+. +...+..+...|... +++++|.+.|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 4447778888899999 899999999987653 444446677777654 79999999999987 43 4445
Q ss_pred HHHHHHH-H--cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHHhCCCCCCHHHHHHH
Q 010837 353 FLGALSA-C--GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG-----SLEQALKFVLEMPEKPNSDVWAAL 424 (499)
Q Consensus 353 ~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~l 424 (499)
+..+... + ...++.++|...|++.. +.| +...+..|...|. .| ++++|+++|++.. +.+...+..|
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~L 324 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYL 324 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHH
Confidence 5555554 3 56899999999999998 434 5566777887777 55 9999999999999 7788888888
Q ss_pred HHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----cCChHHHHHHHHHHHhCCCc
Q 010837 425 LSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA----AGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 425 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 485 (499)
...|.. ..++++|...|++..+.|. +.....|..+|.. ..+.++|...++...+.|..
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 888776 4499999999999988764 5688889998875 45899999999998887743
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=3.8e-13 Score=120.02 Aligned_cols=241 Identities=13% Similarity=0.003 Sum_probs=151.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhh
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 264 (499)
.+......+...|++++|++.|++..+. +...+..+...+...|++++|.+.+++..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------------------- 64 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF-------------------- 64 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------------------
Confidence 3444555666666666666666665432 34455666666666666666666655443
Q ss_pred HHHHHHHHHHHHHcccCCC--chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
+....++ ...|..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++
T Consensus 65 ------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 65 ------------SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp ------------TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred ------------hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3111111 12356666777777777777777777653 355677777777777888888888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC-
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS---LEQALKFVLEMPE- 414 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~- 414 (499)
+..+. .+.+...+..+...+...+++++|.+.|+++.+. .| +...+..+..++...|+ +++|...++++.+
T Consensus 133 ~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 133 KQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 77664 2334555555552333345888888888877733 34 45666667777777676 6666666665544
Q ss_pred ---CCC------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 415 ---KPN------SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 415 ---~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.|+ ..+|..+...|...|++++|.+.++++++..|.. +.....+......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN-KKAIDGLKMKLEH 267 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHC-----
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH-HHHHHHhhhhhcc
Confidence 133 2567778888888999999999999999988877 6666555554443
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=3.1e-13 Score=128.16 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=47.6
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhccC--C-C----hHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLE--K-N----VICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.....+......+...|++++|+..|++..+ + + ..++..+...+...|++++|...+++..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4455666777888999999999999988754 2 2 3567888888999999999999887653
No 51
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.9e-13 Score=130.04 Aligned_cols=268 Identities=11% Similarity=0.033 Sum_probs=177.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccC--C-Ch----HhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLE--K-NV----ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
.+..+...+...|++++|++.|++..+ + +. ..|..+...|...|++++|.+.|++...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------------- 114 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------------- 114 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------
Confidence 445567788889999999999988754 2 22 4677888888888898888888875431
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------ChhHHHHHHHHHHhCCC-
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------NVFTWTSMIDGYGKNGN- 330 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~- 330 (499)
+.... .........+..+...|...|++++|...|+++.+. ...++..+...|...|+
T Consensus 115 ----------~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 182 (411)
T 4a1s_A 115 ----------LAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKH 182 (411)
T ss_dssp ----------HHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcc
Confidence 10000 000112334555666677777777777777665431 23456667777777777
Q ss_pred ----------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----
Q 010837 331 ----------------PNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---- 385 (499)
Q Consensus 331 ----------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---- 385 (499)
+++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++
T Consensus 183 ~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (411)
T 4a1s_A 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262 (411)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHH
Confidence 77777777665432 1111 2235666777788888888888888777632111111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----C
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE----KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----R 452 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 452 (499)
...+..+...|...|++++|.+.+++... .. ...++..+...+...|++++|.+.++++++..... .
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 342 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHH
Confidence 23677778888888888888888877655 11 14567778888888888888888888887653322 1
Q ss_pred CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 453 PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
..++..++.+|.+.|++++|.+.+++..+.
T Consensus 343 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 343 ARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 347778888888888888888888876543
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=7e-13 Score=123.36 Aligned_cols=241 Identities=10% Similarity=0.025 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCC-HHHHHHHHHhcCCCChhhHHHHHHHHhcCh
Q 010837 187 VLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGF-VEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262 (499)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 262 (499)
..|..+...+.+.|++++|++.+++..+. +..+|+.+...+...|+ +++|+..|++..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al------------------ 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII------------------ 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH------------------
Confidence 45666677777777777777777776442 45566666666666664 666666665443
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
+... -+...|..+..++.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..++
T Consensus 160 --------------~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 160 --------------EEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp --------------HHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred --------------HHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3222 1445666677778888888888888888764 367788888888888899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcc-cCcHHHH-----HHHHHHchHhcCCCC-ChhHHHHHHHHHHhcC--CHHHHHHHHH
Q 010837 340 MMQECCVQPNYVTFLGALSACGH-AGLVDKG-----REIFESMERDYSMKP-KMEHYACMVDLLGRAG--SLEQALKFVL 410 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~ 410 (499)
++.+.. +-+...|+.+..++.. .|..++| +..+++..+ +.| +...|..+..++...| ++++|++.+.
T Consensus 225 ~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~ 300 (382)
T 2h6f_A 225 QLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLL 300 (382)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHH
Confidence 888863 3466778888888877 5554666 477777773 356 5677888888888877 5888888888
Q ss_pred hCCC-CCCHHHHHHHHHHHhhcC--------C-HHHHHHHHHHH-HhcCCCCCCchhHHHHHHHHh
Q 010837 411 EMPE-KPNSDVWAALLSSCRLHD--------D-VEMANIAANEI-FKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 411 ~~~~-~~~~~~~~~l~~~~~~~~--------~-~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 465 (499)
++.. ..+...+..++..|.+.| + .++|+++++++ .+.+|.. ...|..++..+..
T Consensus 301 ~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 301 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR-KEYWRYIGRSLQS 365 (382)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHH
Confidence 7732 345677888888887763 2 58899999998 7887766 6677777766653
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=1.5e-12 Score=111.73 Aligned_cols=201 Identities=14% Similarity=0.035 Sum_probs=133.6
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHH
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-VVYNAMIE 256 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~~~~~ll~ 256 (499)
+++...+..+...+.+.|++++|+..|++..+. +...+..+...+.+.|++++|...|++.. .|+. ..+..+-.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 566777888888888999999999998887553 56788888888888888888888888765 3432 22222222
Q ss_pred HHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhH
Q 010837 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~ 333 (499)
.+.... ... .. .+...|++++|...|++..+ | +...|..+..++...|++++
T Consensus 82 ~~~~~~--------------~~~--~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 82 AYVALY--------------RQA--ED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHH--------------HTC--SS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhh--------------hhh--hh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 211100 000 00 01223888888888887764 3 56778888888888999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
|+..|++..+.. .+...+..+..++...|++++|...|+++.+. .| +...+..+...+.+.|++++|++.|++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999888876 67788888888888999999999999988843 45 6677888888888999999998888876
Q ss_pred C
Q 010837 413 P 413 (499)
Q Consensus 413 ~ 413 (499)
.
T Consensus 212 ~ 212 (217)
T 2pl2_A 212 H 212 (217)
T ss_dssp -
T ss_pred h
Confidence 4
No 54
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=6.6e-13 Score=122.19 Aligned_cols=268 Identities=13% Similarity=0.042 Sum_probs=189.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccC--C-C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLE--K-N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
.+......+...|++++|...|++..+ + + ...+..+...+...|++++|.+.+++...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------- 71 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT--------------- 71 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 344556678888999999998888744 2 2 35677788888888888888888775421
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCC-
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGN- 330 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~- 330 (499)
+.... .........+..+...|...|++++|...+++..+ ++ ..++..+...+...|+
T Consensus 72 ----------~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 72 ----------LARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp ----------HHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----------Hhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcc
Confidence 11100 00001233556677778888888888888877653 12 3367777788888888
Q ss_pred -------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--
Q 010837 331 -------------------PNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-- 384 (499)
Q Consensus 331 -------------------~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-- 384 (499)
+++|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+...-.+
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 88888888776432 1111 134677777888889999999999888773211111
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---
Q 010837 385 --KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND--- 451 (499)
Q Consensus 385 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 451 (499)
...++..+...+...|++++|.+.+++... .++ ..++..+...+...|++++|...++++.+..+..
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 233778888889999999999999988765 122 4577888889999999999999999988754332
Q ss_pred --CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 452 --RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
...++..++.+|.+.|++++|.+.+++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1347888999999999999999999988764
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=1.5e-12 Score=108.72 Aligned_cols=164 Identities=13% Similarity=0.055 Sum_probs=133.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...+...... .| +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45677888888888888888888888887753 345677888888888888888888888888733 33 55667777
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
...+...++++.|.+.+.+... +.+...+..+...+.+.|++++|++.++++++.+|.. +.++..++.+|.+.|+++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHH
Confidence 7888888888888888887765 4567788888888999999999999999999988877 888999999999999999
Q ss_pred HHHHHHHHHHhC
Q 010837 471 SVTELREKMKLR 482 (499)
Q Consensus 471 ~A~~~~~~~~~~ 482 (499)
+|.+.+++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=1.7e-12 Score=114.40 Aligned_cols=193 Identities=10% Similarity=-0.015 Sum_probs=144.9
Q ss_pred cchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHH
Q 010837 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGY 121 (499)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~ 121 (499)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++. ..+...|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 5677888889999999999999999999886 5577888999999999999999999998765 34677889999999
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCC
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (499)
...|++++|++.++++.+.+..|+ ...+..+...+ ...++.+.|...+....+.. +.+...+..+...+...|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS-----LQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC
Confidence 999999999999999887333443 34455555555 56667777777777766654 334556666777777777
Q ss_pred ChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 201 KTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 201 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
++++|.+.++...+. +...+..+...+...|++++|.+.++++.
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777766442 44556666666777777777777766654
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=3.1e-13 Score=120.79 Aligned_cols=217 Identities=15% Similarity=0.003 Sum_probs=176.4
Q ss_pred hhhHHHHHHHHHHHHHcccC---CCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHH
Q 010837 262 IETARKALEVHCQLIKNVFF---EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQAL 335 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~ 335 (499)
.+++++|...++.+.+.... .+...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 37888899999988886421 2456788899999999999999999999874 36789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 010837 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE- 414 (499)
Q Consensus 336 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 414 (499)
+.|++..+.. +.+...+..+..++...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999998863 446788899999999999999999999999843 45444444455556778999999999977655
Q ss_pred -CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 415 -KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND---RPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 415 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+++...+ .++..+...++.++|.+.++++.+..+.. +...+..++.+|.+.|++++|...+++..+.+
T Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 174 SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 3333344 47777888899999999999988765532 14788999999999999999999999998754
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=3.6e-13 Score=130.13 Aligned_cols=209 Identities=12% Similarity=0.032 Sum_probs=180.3
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCCh-HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI-DDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
+..+++...++...... +.+...+..+...|...|++ ++|...|+++.+ .+...|..+...|...|++++|.+.|
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34556666666554432 24667888899999999999 999999998864 35789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHccc---------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc--------C
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHA---------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA--------G 400 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------~ 400 (499)
++..+. .|+...+..+..++... |++++|...+++..+. .| +...|..+..+|... |
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999985 57788899999999999 9999999999999843 45 678899999999998 9
Q ss_pred CHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 401 SLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 401 ~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
++++|++.|++... .| +...|..+..+|...|++++|.+.|+++.+..|.. ...+..+..++...|++++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887 45 78899999999999999999999999999999988 88999999999999999999875
Q ss_pred HHH
Q 010837 476 REK 478 (499)
Q Consensus 476 ~~~ 478 (499)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=4.3e-13 Score=124.75 Aligned_cols=203 Identities=13% Similarity=0.085 Sum_probs=166.7
Q ss_pred CchhHHHHHHHHHhcCC-hHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGK-IDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
+...|+.+..++.+.|+ +++|+..|+++.+ .+...|..+..++...|++++|+..|+++.+.. +-+...|..+..
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~ 208 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQW 208 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHH
Confidence 44566777888889997 9999999999875 377899999999999999999999999999863 457788999999
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHh-cCCHHHH-----HHHHHhCCC--CCCHHHHHHHHHHHh
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGR-AGSLEQA-----LKFVLEMPE--KPNSDVWAALLSSCR 429 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~~~~~~a-----~~~~~~~~~--~~~~~~~~~l~~~~~ 429 (499)
++...|++++|+..++++.+ +.| +...|+.+..++.+ .|..++| ++.|++... +.+...|..+...+.
T Consensus 209 ~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99999999999999999994 356 67889999999998 6665777 477877765 446788999999998
Q ss_pred hcC--CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC---------ChHHHHHHHHHH-HhCCCccCcccccc
Q 010837 430 LHD--DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG---------KWDSVTELREKM-KLRGVLKDTGCSWV 493 (499)
Q Consensus 430 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~ 493 (499)
..| ++++|.+.++++ +..+.. ...+..++.+|.+.| .+++|.++++++ .+ +.|.-...|.
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~ 357 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWR 357 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred ccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence 888 689999999988 666665 788899999999874 358999999998 55 4555444454
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.47 E-value=6.3e-13 Score=116.33 Aligned_cols=177 Identities=11% Similarity=0.015 Sum_probs=142.2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+...+..+...|.+.|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345566677778888888888888887764 366788888888999999999999999988763 4567788888888
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
+...|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++.. +.+..++..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999988431 23677888889999999999999999988766 35678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
.+.++++.+..+.. ...+..+....
T Consensus 213 ~~~~~~~~~~~p~~-~~~~~~~~~l~ 237 (243)
T 2q7f_A 213 LEMLDKAIDIQPDH-MLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHTC--
T ss_pred HHHHHHHHccCcch-HHHHHHHHHHH
Confidence 99999999988877 55655554443
No 61
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1.1e-11 Score=106.94 Aligned_cols=199 Identities=11% Similarity=0.018 Sum_probs=152.1
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
...|..+...+...|++++|.+.|++. .+... .+...+..+...|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~--------------------------------~~~~~-~~~~~~~~l~~~~~~ 54 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDA--------------------------------LKSDP-KNELAWLVRAEIYQY 54 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------------------HHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------------------HHhCc-cchHHHHHHHHHHHH
Confidence 445566666666666666666666544 33221 234456667777888
Q ss_pred cCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCcHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN-GNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
.|++++|...++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 55 LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887753 3667788888889999 999999999999887333343 5677888888999999999999
Q ss_pred HHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 372 IFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 372 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
.++++.+. .| +...+..+...+...|++++|.+.++++.. + .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 135 ~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 135 YLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99998843 34 577888899999999999999999988776 4 56777888888888999999999999998888
Q ss_pred CCCC
Q 010837 448 NAND 451 (499)
Q Consensus 448 ~~~~ 451 (499)
.|..
T Consensus 212 ~p~~ 215 (225)
T 2vq2_A 212 FPYS 215 (225)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7765
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=1.2e-11 Score=116.44 Aligned_cols=230 Identities=10% Similarity=-0.024 Sum_probs=147.2
Q ss_pred HHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcCh
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 262 (499)
....+...|++++|++.|++..+. ...++..+...|...|++++|.+.+.+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al------------------ 170 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY------------------ 170 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 556677888999998888887542 23567788888888888888888776532
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCChhH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~ 333 (499)
+++..... .......+++.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++
T Consensus 171 -------~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 242 (383)
T 3ulq_A 171 -------EIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242 (383)
T ss_dssp -------HHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------HHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHH
Confidence 11111000 0001123566677788888888888888877653 11 2367777788888888888
Q ss_pred HHHHHHHHHHc----CC-CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC--CC-ChhHHHHHHHHHHhcCC---H
Q 010837 334 ALELFCMMQEC----CV-QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM--KP-KMEHYACMVDLLGRAGS---L 402 (499)
Q Consensus 334 a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~~~---~ 402 (499)
|.+.+++..+. +. +....++..+..++.+.|++++|...+++..+-..- .| ....+..+...|...|+ +
T Consensus 243 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 243 AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 88888777652 22 233456777777788888888888877776632110 11 12234556666667777 6
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 403 EQALKFVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 403 ~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
++|+.++++....|+ ...+..+...|...|++++|.+.++++.+.
T Consensus 323 ~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777777654222 335556666677777777777777766653
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=2.3e-12 Score=122.15 Aligned_cols=296 Identities=12% Similarity=0.036 Sum_probs=191.2
Q ss_pred ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
....+......+...|++++|+..|++..+.+ |+.... -...+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-----------------------------------~~~~~ 50 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT-----------------------------------LSAIY 50 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH-----------------------------------HHHHH
Confidence 44456667777888888888888888887752 211000 02346
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
..+...|...|++++|...+++..+. ...++..+...+...|++++|...+++..+-
T Consensus 51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------- 116 (406)
T 3sf4_A 51 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------- 116 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------
Confidence 66778888899999999888876331 2457788888899999999999888765410
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCC--------------------hHHHHHHHHhcCC-----C--
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK--------------------IDDARRVFDHMQQ-----K-- 313 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~-----~-- 313 (499)
..... .......++..+...|...|+ +++|...+++..+ .
T Consensus 117 -----------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 183 (406)
T 3sf4_A 117 -----------SRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDR 183 (406)
T ss_dssp -----------HHHHT--CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred -----------HHhcc--cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 00000 000012234444555555555 5556555554432 1
Q ss_pred --ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--
Q 010837 314 --NVFTWTSMIDGYGKNGNPNQALELFCMMQECCV-QPN----YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-- 384 (499)
Q Consensus 314 --~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-- 384 (499)
....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-..
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 234566777777788888888888877654210 111 23667777788888888888888887763211111
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---
Q 010837 385 --KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND--- 451 (499)
Q Consensus 385 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 451 (499)
...++..+...|...|++++|.+.+++... .++ ..++..+...|...|++++|.+.++++.+.....
T Consensus 264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 343 (406)
T 3sf4_A 264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 145677788888888998888888887665 122 4577788888889999999999998887643221
Q ss_pred --CCchhHHHHHHHHhcCCh
Q 010837 452 --RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~ 469 (499)
...++..+..++...|+.
T Consensus 344 ~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 344 SGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHHHhhHh
Confidence 145677788888887765
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=2.6e-10 Score=113.28 Aligned_cols=423 Identities=10% Similarity=0.028 Sum_probs=285.1
Q ss_pred CChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCC---hhhHHH
Q 010837 59 DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQ---VEESLS 132 (499)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~a~~ 132 (499)
....+-...++..+... +-|...|..++..+.+.+.++.+..+|+.+.. .....|...+..-.+.|+ ++.+.+
T Consensus 46 ~~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 44566666777777776 67999999999999999999999999998873 466778888888888888 999999
Q ss_pred HHHHHHHcC-CCCChhhHHHHhhhccccccCC---cCcchhHHHHHHHHHH-cCC-CCc-hhHHHHHHHHHHh-------
Q 010837 133 LVRKLVSSG-ERPDGYTFSMILKASTCCRSNV---PLPRNLGRMVHAQILK-CDV-KAD-DVLYTALVDSYVK------- 198 (499)
Q Consensus 133 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~---~~~~~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 198 (499)
+|++..... ..|+...|..-+.-....++.. .+..+...++|+..+. .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999998763 2478877776665432111111 1123445577776554 466 554 4678777776543
Q ss_pred --CCChhHHHHHHHhccCC---Ch-HhH---HHHHHHHH----------hCCCHHHHHHHHHhcC-------C-------
Q 010837 199 --GGKTSYARIVFDMMLEK---NV-ICS---TSMISGFM----------SQGFVEDAEEIFRKTV-------E------- 245 (499)
Q Consensus 199 --~g~~~~A~~~~~~~~~~---~~-~~~---~~l~~~~~----------~~g~~~~a~~~~~~~~-------~------- 245 (499)
.++++.+.++|+....- +. .+| ..+...+. ...+++.|...+.++. +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34567888999888652 11 222 22222210 0112334444444321 1
Q ss_pred -------C--C------hhhHHHHHHHHhcCh------hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHH
Q 010837 246 -------K--D------IVVYNAMIEGYSISI------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304 (499)
Q Consensus 246 -------~--~------~~~~~~ll~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 304 (499)
| + ...|...+.---... ...+.+..+|++.+..-. -...+|-..+..+...|+.++|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHH
Confidence 1 0 012333332221111 012345567777777533 36677777888888889999996
Q ss_pred -HHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHH
Q 010837 305 -RVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECC---------VQPN------------YVTFLGALSA 359 (499)
Q Consensus 305 -~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~~~~~~ll~~ 359 (499)
.+|++... | +...|...+....+.|++++|.++|+++.+.. -.|+ ...|...+..
T Consensus 364 r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 364 TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 99998764 3 55667788888889999999999999987641 0132 2357777777
Q ss_pred HcccCcHHHHHHHHHHchHh-cCCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHH
Q 010837 360 CGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRA-GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 435 (499)
..+.|+.+.|.++|..+.+. ... ...+|...+..-.+. ++.+.|.++|+...+ +.+...|...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~--~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLV--TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGS--CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 77889999999999999843 122 233444333333344 458999999998887 446667778888888899999
Q ss_pred HHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 436 MANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.|..+|++++...+.+ ....|...+..-.+.|+.+.+.++.+++.+.-..
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999887732 2567888888889999999999999999876543
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=6.8e-12 Score=104.60 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=143.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+..+|..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|...+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 566788899999999999999999999874 367889999999999999999999999998763 4466777788888
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+...++++.|...+...... .| +...+..+..+|.+.|++++|++.|++..+ +.+..+|..+..++.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998843 44 677889999999999999999999998876 4567899999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 010837 437 ANIAANEIFKLNAN 450 (499)
Q Consensus 437 a~~~~~~~~~~~~~ 450 (499)
|++.|+++++.+|.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999988764
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=5.2e-11 Score=108.22 Aligned_cols=177 Identities=9% Similarity=0.083 Sum_probs=102.0
Q ss_pred HHHHHHHHhcCC---C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHcccCcHHHHHHHHH
Q 010837 301 DDARRVFDHMQQ---K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN-YV-TFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 301 ~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
++|..+|++..+ | +...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666666543 2 3445666666666666666666666666652 332 22 56666666666666666666666
Q ss_pred HchHhcCCCC-ChhHHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC--
Q 010837 375 SMERDYSMKP-KMEHYACMVDLLG-RAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-- 448 (499)
Q Consensus 375 ~~~~~~~~~p-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 448 (499)
+..+ ..| +...|...+.... ..|++++|.++|+++.+ +.+...|..++..+.+.|++++|..+|+++++..
T Consensus 159 ~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 159 KARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 6662 222 3333433322211 24666666666666654 3345566666666666666666666666666642
Q ss_pred -CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 449 -ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 449 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
|......|..++..+.+.|+.++|..+++++.+.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2112445666666666666666666666666543
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.40 E-value=5.6e-12 Score=119.79 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHhccCCC--C-Ch----HHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhh
Q 010837 82 ISIKLLILHLKCGALKYAGQMFDELPQ--R-TL----SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154 (499)
Q Consensus 82 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 154 (499)
.+..+...+...|++++|...|++..+ | +. ..|..+...+...|++++|++.+++..+.. .
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------~ 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA------------K 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------------H
Confidence 334455556666666666666665442 2 22 245566666666666666666666654320 0
Q ss_pred hccccccCCcCcchhHHHHHHHHHHcCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHH
Q 010837 155 ASTCCRSNVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMI 224 (499)
Q Consensus 155 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~ 224 (499)
+.+- +.....+..+...|...|++++|.+.+++..+. ...++..+.
T Consensus 118 ------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 118 ------------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLG 173 (411)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 0000 112345666777777788888887777765431 123555566
Q ss_pred HHHHhCCC
Q 010837 225 SGFMSQGF 232 (499)
Q Consensus 225 ~~~~~~g~ 232 (499)
..|...|+
T Consensus 174 ~~~~~~g~ 181 (411)
T 4a1s_A 174 NVYHAKGK 181 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCc
Confidence 66666666
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.40 E-value=1.1e-09 Score=108.91 Aligned_cols=407 Identities=9% Similarity=0.016 Sum_probs=271.1
Q ss_pred cCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCC---hhHHHHHhccCCC-----CC
Q 010837 39 LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQ-----RT 110 (499)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-----~~ 110 (499)
..+|.+..+|..++..+...+.++.+..+|+.+... ++.....|...+..-.+.++ ++.+..+|++... |+
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 445789999999999999999999999999999987 47788899999999889898 9999999998653 78
Q ss_pred hHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHc-CC-CCCh-hhHHHHhhhcccccc----CCcCcchhHHHHHH
Q 010837 111 LSAYNYMIAGYLKNGQV--------EESLSLVRKLVSS-GE-RPDG-YTFSMILKASTCCRS----NVPLPRNLGRMVHA 175 (499)
Q Consensus 111 ~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~~-g~-~p~~-~~~~~ll~~~~~~~~----~~~~~~~~a~~~~~ 175 (499)
+..|...+....+.++. +.+.++|+..... |. .|+. ..|...+........ ...+..+.+..+|.
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888888766665543 3345788876553 76 5653 566655543311000 01234567788888
Q ss_pred HHHHcCCCCchhHHHHHHHHHHh-------------CCChhHHHHHHHhc-------cC--------------C--C---
Q 010837 176 QILKCDVKADDVLYTALVDSYVK-------------GGKTSYARIVFDMM-------LE--------------K--N--- 216 (499)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~-------~~--------------~--~--- 216 (499)
..+......-..+|......-.. ..+++.|...+.++ .. | +
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 87753222122333222211111 11233444444432 10 0 0
Q ss_pred ---hHhHHHHHHHHHhCC-------CHHHHHHHHHhcCC--C-ChhhHHHHHHHHhcChhhHHHHH-HHHHHHHHcccCC
Q 010837 217 ---VICSTSMISGFMSQG-------FVEDAEEIFRKTVE--K-DIVVYNAMIEGYSISIETARKAL-EVHCQLIKNVFFE 282 (499)
Q Consensus 217 ---~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~-~~~~~~~~~~~~~ 282 (499)
...|...+.---..+ ..+.+..+|++... | ....|.....-+... ++.++|. .+++..... .+.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~-~~~~~a~r~il~rAi~~-~P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEK-NTDSTVITKYLKLGQQC-IPN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-SCCTTHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHh-CCC
Confidence 134555554333322 12334566766652 2 334444444433333 5556786 999988864 334
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC-------------CC------------hhHHHHHHHHHHhCCChhHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------------KN------------VFTWTSMIDGYGKNGNPNQALEL 337 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~~~~g~~~~a~~~ 337 (499)
+...+-..+....+.|+++.|..+|+++.+ |+ ...|...+....+.|+.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555677788888999999999999998764 21 23678888888889999999999
Q ss_pred HHHHHHc-C-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 010837 338 FCMMQEC-C-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415 (499)
Q Consensus 338 ~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (499)
|.+..+. + ..+......+.+.- ...++.+.|.++|+...+.++ -+...+...++.....|+.+.|..+|++....
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999875 2 22223333333332 223569999999999996543 35566778888888899999999999998873
Q ss_pred -C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 416 -P----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 416 -~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
| ....|...+.--.+.|+.+.+..+.+++.+..|+.
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3 34678888888889999999999999999998875
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=117.52 Aligned_cols=239 Identities=14% Similarity=0.085 Sum_probs=143.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
..++..+...+...|++++|..+|+++.+ +...............+..+...|..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------------------------~~~~~~~~~~~~~~~~~~~la~~~~~ 81 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-------------------------DLEKTSGHDHPDVATMLNILALVYRD 81 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------HHHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45677777788888888888887765431 11111100111123455566677777
Q ss_pred cCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNGNPNQALELFCMMQEC------CVQP-NYVTFLGALS 358 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~ 358 (499)
.|++++|...++++.+ .....+..+...+...|++++|...+++..+. +..| ....+..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 7777777777766542 12346667777777888888888888777653 2122 2345667777
Q ss_pred HHcccCcHHHHHHHHHHchHhc-----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----------C------
Q 010837 359 ACGHAGLVDKGREIFESMERDY-----SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK----------P------ 416 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~------ 416 (499)
.+...|++++|..+++++.... +..| ...++..+..+|...|++++|.+.++++... +
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 7888888888888888776321 1123 3456777788888888888888888776541 0
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 417 -NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 417 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
....+..+...+...+.+.++...++......+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV-TTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11122223333344455556666666666555554 67788888899999999999988888765
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=1.2e-11 Score=102.95 Aligned_cols=160 Identities=16% Similarity=0.065 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 398 (499)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444443321 223444444445555555555555555555422 11234445555555555
Q ss_pred cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 399 AGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.|++++|.+.++++.. +.+...+..+...+...|++++|.+.++++.+..+.. ...+..++.++.+.|++++|.+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665555443 3345566666666777777777777777777666655 666777777777777777777777
Q ss_pred HHHHhC
Q 010837 477 EKMKLR 482 (499)
Q Consensus 477 ~~~~~~ 482 (499)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776653
No 71
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=1.1e-11 Score=124.66 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=133.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+...|+.+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+ +.| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 34567778888888888888888888887752 33467788888888888888888888888873 356 56788888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..+|...|++++|++.|++..+ +.+...|..+..++...|++++|++.|+++++..|.. ...+..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhcccHH
Confidence 8888888899988888888776 3457788889999999999999999999999998887 888999999999999999
Q ss_pred HHHHHHHHHHh
Q 010837 471 SVTELREKMKL 481 (499)
Q Consensus 471 ~A~~~~~~~~~ 481 (499)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877654
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.37 E-value=8.6e-12 Score=117.32 Aligned_cols=221 Identities=7% Similarity=-0.031 Sum_probs=166.1
Q ss_pred cChhhHHHHHHHHHHHHHccc----CC-CchhHHHHHHHHHhcCChHHHHHHHHhcCC-----C-----ChhHHHHHHHH
Q 010837 260 ISIETARKALEVHCQLIKNVF----FE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----K-----NVFTWTSMIDG 324 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~~l~~~ 324 (499)
...|++++|...++...+.-. .+ ...++..+...|...|++++|...+++..+ + ...+++.+...
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 344777888888888776411 11 245778889999999999999999888763 1 23478888999
Q ss_pred HHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHh---cCCCC-ChhHHHHHHHH
Q 010837 325 YGKNGNPNQALELFCMMQECCV-QPN----YVTFLGALSACGHAGLVDKGREIFESMERD---YSMKP-KMEHYACMVDL 395 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~ 395 (499)
|...|++++|.+.+++..+... .++ ..++..+..+|...|++++|...+++..+- .+..| ...++..+...
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 9999999999999998765311 112 247888899999999999999999988841 12213 46678899999
Q ss_pred HHhcCCHHHHHHHHHhCCC----CCC---HHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 396 LGRAGSLEQALKFVLEMPE----KPN---SDVWAALLSSCRLHDD---VEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
|.+.|++++|.+.+++... ..+ ...+..+...+...|+ +++|+.++++... .......+..++..|.+
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 122 2235667788889999 7777777766511 11124578889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 010837 466 AGKWDSVTELREKMKLR 482 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~ 482 (499)
.|++++|.+.+++..+.
T Consensus 352 ~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.5e-11 Score=113.10 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=49.6
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKP----KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDV 420 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~ 420 (499)
+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+.++++.. ..+ ..+
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33444444444555555444444432110000 133455555666666666666666655543 011 335
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+..+...+...|++++|...++++.+..
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 5666667777777777777777776644
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=2.2e-10 Score=107.37 Aligned_cols=229 Identities=9% Similarity=0.036 Sum_probs=142.1
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCC---------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEK---------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
.....+...|++++|+..|++..+. ...++..+...|...|++++|...+++..
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al----------------- 168 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL----------------- 168 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-----------------
Confidence 3445567788888888888776432 13466777777788888887777766432
Q ss_pred hhhHHHHHHHHHHHHHcccC-CCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhHHHHHHHHHHhCCCh
Q 010837 262 IETARKALEVHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KN----VFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~ 331 (499)
+++.... +.. ....+++.+..+|...|++++|...|++..+ ++ ..++..+...|...|++
T Consensus 169 --------~~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 238 (378)
T 3q15_A 169 --------DIYQNHP--LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDD 238 (378)
T ss_dssp --------HHHHTST--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred --------HHHHhCC--CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCH
Confidence 1111000 000 0133556677778888888888888777653 11 23566777777888888
Q ss_pred hHHHHHHHHHHHc----CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC--C-ChhHHHHHHHHHHhcCC---
Q 010837 332 NQALELFCMMQEC----CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK--P-KMEHYACMVDLLGRAGS--- 401 (499)
Q Consensus 332 ~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~--- 401 (499)
++|.+.+++..+. +.+....++..+..++.+.|++++|...+++..+-..-. + ....+..+...|...++
T Consensus 239 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 8888888777651 122235567777777788888888888887776432211 1 22344555555666666
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 402 LEQALKFVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 402 ~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+++|+..+++....++ ...+..+...|...|++++|...++++.+
T Consensus 319 ~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776544222 23455666667777777777777766654
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=4.2e-12 Score=115.54 Aligned_cols=240 Identities=12% Similarity=0.038 Sum_probs=157.6
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccC--------C---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE--------K---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 253 (499)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|.+.+++..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------- 96 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL--------- 96 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------
Confidence 455788899999999999999999998865 2 24578888899999999999998887542
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-----------ChhHHHHHH
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----------NVFTWTSMI 322 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~ 322 (499)
.+...............+..+...|...|++++|...|+++.+. ....+..+.
T Consensus 97 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la 160 (311)
T 3nf1_A 97 ----------------AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160 (311)
T ss_dssp ----------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----------------HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 22221111111123445666777788888888888888776531 234677788
Q ss_pred HHHHhCCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhc------CCCCC-hh-
Q 010837 323 DGYGKNGNPNQALELFCMMQEC------CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDY------SMKPK-ME- 387 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~p~-~~- 387 (499)
..+...|++++|.++++++.+. +..| ...++..+..+|...|++++|...++++.+.. ...+. ..
T Consensus 161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 240 (311)
T 3nf1_A 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPI 240 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 8888899999999998888664 2123 23467778888889999999999998887421 11121 11
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 388 -----HYACMVDLLGRAGSLEQALKFVLEMPE-K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 388 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
.+..+...+...+.+.++...++.... . ....++..+..+|...|++++|.+.++++++..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 241 WMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 122222333344555555556666554 2 3456788899999999999999999999887654
No 76
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=6e-10 Score=101.19 Aligned_cols=184 Identities=12% Similarity=0.104 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-Chh-HHHHHHHHHHhCCChhHHHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVF-TWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
.++|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 367777777777632223455788888889999999999999998875 3 343 788899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHH-cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----C
Q 010837 341 MQECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----K 415 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 415 (499)
..+.+ +++...|....... ...|+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+++.. .
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 98753 33444554433332 23699999999999998542 22677889999999999999999999998876 3
Q ss_pred C--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 416 P--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 416 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
| ....|..++....+.|+.+.|..+++++.+..|+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 3 46688888999999999999999999999988875
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=4.6e-11 Score=115.33 Aligned_cols=180 Identities=7% Similarity=-0.037 Sum_probs=157.7
Q ss_pred ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 299 KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP-NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 299 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
.++++...+++... .+...+..+...+...|++ ++|++.|++..+.. +.+...+..+..+|...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666666665543 3678899999999999999 99999999998863 4457899999999999999999999999
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhc---------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc--------CCHH
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRA---------GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH--------DDVE 435 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~--------~~~~ 435 (499)
+.. .+.|+...+..+...|... |++++|++.|+++.+ +.+...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4568888899999999999 999999999999876 45688999999999988 9999
Q ss_pred HHHHHHHHHHhcCC---CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 436 MANIAANEIFKLNA---NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 436 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+|++.|+++++..| .. +..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSN-PDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999988 55 8999999999999999999999999988743
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.29 E-value=2.6e-10 Score=106.93 Aligned_cols=297 Identities=10% Similarity=0.048 Sum_probs=198.6
Q ss_pred CCchhHHHHHHHHH--HhCCChhHHHHHHHhccC------C--ChHhHHHHHHH--HHhCCCHHHHH---------HHHH
Q 010837 183 KADDVLYTALVDSY--VKGGKTSYARIVFDMMLE------K--NVICSTSMISG--FMSQGFVEDAE---------EIFR 241 (499)
Q Consensus 183 ~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~--~~~~g~~~~a~---------~~~~ 241 (499)
.|+..+-+.|-+-| .+.+++++|.++++++.+ . +...|..++.. ....+.++.+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34455555555555 788999999888887633 1 23334444332 11112222222 4444
Q ss_pred hcC---CCCh--h--hHHHHHHHHhcChhhHHHHHHHHHHHHHcccC-C----CchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 242 KTV---EKDI--V--VYNAMIEGYSISIETARKALEVHCQLIKNVFF-E----DVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 242 ~~~---~~~~--~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.+. .+.. . -|......+....|+.++|...++...+.... + ...++..+..+|...|+++.|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 332 2211 1 12223333334458888999999988765321 2 245778889999999999999998887
Q ss_pred cCC-----CC-----hhHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 310 MQQ-----KN-----VFTWTSMIDGYGKNGNPNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 310 ~~~-----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
..+ ++ ..+++.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 653 12 346788899999999999999999987653 1111 23467788899999999999999999
Q ss_pred HchHhcC--CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHhhcCC---HHHHHHHH
Q 010837 375 SMERDYS--MKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE------KPN-SDVWAALLSSCRLHDD---VEMANIAA 441 (499)
Q Consensus 375 ~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~---~~~a~~~~ 441 (499)
+...-.. ..| ...++..+...|.+.|++++|...+++... .+. ...+..+...+...++ +++|+..+
T Consensus 247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 9884110 123 466788899999999999999999987654 122 3456666667778888 77777777
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 442 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
++.. ........+..++..|.+.|++++|.+.+++..+
T Consensus 327 ~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 327 EKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6621 1111145677899999999999999999998764
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.29 E-value=1.5e-10 Score=96.21 Aligned_cols=164 Identities=13% Similarity=-0.023 Sum_probs=142.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 361 (499)
..+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4566678889999999999999999875 367788899999999999999999999998863 456788888999999
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
..|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.. +.+..++..+...+...|++++|.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999843 233677888999999999999999999998876 4567899999999999999999999
Q ss_pred HHHHHHhcCCCC
Q 010837 440 AANEIFKLNAND 451 (499)
Q Consensus 440 ~~~~~~~~~~~~ 451 (499)
.++++.+..+..
T Consensus 166 ~~~~~~~~~~~~ 177 (186)
T 3as5_A 166 HFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHcCCCc
Confidence 999999887665
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.28 E-value=7.9e-11 Score=101.89 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=137.2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 456777788888888999999988887763 566677778888888899999999988888752 234567778888
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCC-Ch-------hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHH
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKP-KM-------EHYACMVDLLGRAGSLEQALKFVLEMPE-KPN---SDVWAALLS 426 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~ 426 (499)
++...|++++|...+++..+. .| +. ..|..+...+...|++++|++.|+++.+ .|+ ...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 888889999999988888843 34 33 4577777888888889999988888877 454 456777777
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
++... +...++++...+... ...|... .....+.+++|...+++..+..
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~-~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSN-KEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTC-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHHhcccCC-HHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 77544 334456666655444 3333333 3445667899999999988754
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=4.9e-09 Score=97.98 Aligned_cols=260 Identities=11% Similarity=0.039 Sum_probs=120.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccC----CCh----HhHHHHHHHHHhCCCHHHHHHHHHhcCC-----CChhhHHHHH
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLE----KNV----ICSTSMISGFMSQGFVEDAEEIFRKTVE-----KDIVVYNAMI 255 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ll 255 (499)
...+...+...|++++|...+++... .+. .+++.+...+...|++++|.+.+++... .+...
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----- 91 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY----- 91 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-----
Confidence 34445566678888888888776532 122 2455566677777888888777766541 11110
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----------C-ChhHHHHHHHH
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----------K-NVFTWTSMIDG 324 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l~~~ 324 (499)
...++..+...+...|++++|...+++..+ + ....+..+...
T Consensus 92 ---------------------------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 92 ---------------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 011123334444455555555555444331 0 01223334444
Q ss_pred HHhCCChhHHHHHHHHHHHcCCC--C--CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHH-----HHHHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQ--P--NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA-----CMVDL 395 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~ 395 (499)
+...|++++|...+++....... + ...++..+...+...|++++|...+++......-......+. ..+..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 224 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 55555555555555554432111 0 123344444455555555555555555442111000000111 12222
Q ss_pred HHhcCCHHHHHHHHHhCCCC-CC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC----C-CchhHHHHHHHH
Q 010837 396 LGRAGSLEQALKFVLEMPEK-PN-----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND----R-PGAYVALSNTLA 464 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~ 464 (499)
+...|++++|...+++.... +. ...+..+...+...|++++|...++++....... . ...+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 44555555555555555431 10 1233444455555555555555555554322111 0 123444455555
Q ss_pred hcCChHHHHHHHHHHH
Q 010837 465 AAGKWDSVTELREKMK 480 (499)
Q Consensus 465 ~~g~~~~A~~~~~~~~ 480 (499)
..|+.++|...+++..
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5555555555555443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=3.6e-10 Score=97.67 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=152.9
Q ss_pred ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHH
Q 010837 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMID 323 (499)
Q Consensus 247 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~ 323 (499)
|...+...-..+... |++++|...|+...+....++...+..+..++.+.|++++|...|++..+ | +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNA-KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 444555555555555 89999999999999987656777777799999999999999999999875 3 5568889999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNY-------VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMV 393 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~ 393 (499)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++. .+.|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 9999999999999999998853 3344 457778888899999999999999998 44665 56777888
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
.+|...|+. .++++.. ..+...|.... ....+.+++|...++++.+..|.. ..+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~-~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNR-TEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHH
Confidence 888766543 2333222 23444444433 334567899999999999999887 5555544443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=3.5e-11 Score=107.59 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCCChhHHH
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNGNPNQAL 335 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~ 335 (499)
+|++++..+.....+....++..+...|...|++++|...|+++.+ ....++..+...|...|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 3444444443322223455777788888888888888888877652 13456777888888889999988
Q ss_pred HHHHHHHHc------CC-CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhc-----CCCC-ChhHHHHHHHHHHhcCCH
Q 010837 336 ELFCMMQEC------CV-QPNYVTFLGALSACGHAGLVDKGREIFESMERDY-----SMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 336 ~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
+.+++..+. .. +....++..+...+...|++++|...++++.... +-.| ...++..+..+|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888887654 11 2234567778888888899999988888887320 1133 456778888888889999
Q ss_pred HHHHHHHHhCCC----------C-CCHHHHHHHHHHHhhcCC------HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 403 EQALKFVLEMPE----------K-PNSDVWAALLSSCRLHDD------VEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 403 ~~a~~~~~~~~~----------~-~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
++|.+.++++.. . .....|..+...+...+. +..+...++......+.. ..++..++.+|.+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV-NTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHH
Confidence 999888877654 1 112233333333332222 223322222222122222 4578889999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 010837 466 AGKWDSVTELREKMKLR 482 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~ 482 (499)
.|++++|.+.+++..+.
T Consensus 265 ~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 265 QGKLEAAHTLEDCASRN 281 (283)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999887653
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=1.9e-10 Score=115.60 Aligned_cols=161 Identities=9% Similarity=0.105 Sum_probs=141.8
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+...++.|..+|.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|++.|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 356788899999999999999999999875 367889999999999999999999999998853 3457789999999
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+...|++++|.+.|++..+ +.| +...|..+..+|.+.|++++|++.|++..+ +.+...+..+..++...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999983 356 678899999999999999999999999877 3467899999999999999999
Q ss_pred HHHHHHHHHhc
Q 010837 437 ANIAANEIFKL 447 (499)
Q Consensus 437 a~~~~~~~~~~ 447 (499)
|.+.++++++.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888764
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=5.8e-09 Score=97.48 Aligned_cols=269 Identities=12% Similarity=0.037 Sum_probs=173.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 010837 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194 (499)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (499)
......+...|++++|...+++..... |+..... ....++.+..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~----------------------------------~~~~~~~l~~ 61 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYS----------------------------------RIVATSVLGE 61 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHH----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhH----------------------------------HHHHHHHHHH
Confidence 334455677888888888888877642 2111000 0123455667
Q ss_pred HHHhCCChhHHHHHHHhccCC-----C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhH
Q 010837 195 SYVKGGKTSYARIVFDMMLEK-----N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 265 (499)
.+...|++++|.+.+++..+. + ..++..+...+...|++++|.+.+++..
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--------------------- 120 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF--------------------- 120 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------
Confidence 788889999999998887441 2 2345667778888999999988887542
Q ss_pred HHHHHHHHHHHHcccC--C-CchhHHHHHHHHHhcCChHHHHHHHHhcCC--C------ChhHHHHHHHHHHhCCChhHH
Q 010837 266 RKALEVHCQLIKNVFF--E-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K------NVFTWTSMIDGYGKNGNPNQA 334 (499)
Q Consensus 266 ~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~~~~~~~g~~~~a 334 (499)
.+.. +.+.. | ....+..+...+...|++++|...+++..+ + ....+..+...+...|++++|
T Consensus 121 ----~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 121 ----QLIN---EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp ----HHHH---HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred ----HHHH---HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 1111 11111 1 123445566777888888888888877542 1 124566777888888999999
Q ss_pred HHHHHHHHHcCCCCC--HHHHH----HHHHHHcccCcHHHHHHHHHHchHhcCCCC---ChhHHHHHHHHHHhcCCHHHH
Q 010837 335 LELFCMMQECCVQPN--YVTFL----GALSACGHAGLVDKGREIFESMERDYSMKP---KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a 405 (499)
...+++.......++ ..... ..+..+...|++++|...++..... ...+ ....+..+...+...|++++|
T Consensus 194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A 272 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPA 272 (373)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 999888765321111 11111 2334467889999999999888732 2111 122456777888899999999
Q ss_pred HHHHHhCCC----CC---CH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 406 LKFVLEMPE----KP---NS-DVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 406 ~~~~~~~~~----~~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
...+++... .+ +. ..+..+..++...|+.++|...+++.....
T Consensus 273 ~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 273 EIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 998887654 11 12 356667778888999999999998887643
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=7.1e-10 Score=99.78 Aligned_cols=203 Identities=12% Similarity=0.009 Sum_probs=130.1
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------ChhHHHHHHHHHHhCCChhH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------NVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~ 333 (499)
+++++|...+... ...|...|++++|...|++..+- ...+|+.+..+|...|++++
T Consensus 31 ~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3466666666555 33466778888888777766431 13567778888888888888
Q ss_pred HHHHHHHHHHcCC---CC--CHHHHHHHHHHHccc-CcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHhcCCHH
Q 010837 334 ALELFCMMQECCV---QP--NYVTFLGALSACGHA-GLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 334 a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~ 403 (499)
|+..+++..+... .+ -..++..+..+|... |++++|...|++..+-..-..+ ..++..+...|.+.|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8888877654311 11 134677777788885 8888888888887732110001 346777888888888888
Q ss_pred HHHHHHHhCCC-CC---CH-----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc----hhHHHHHHHH--hcCC
Q 010837 404 QALKFVLEMPE-KP---NS-----DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG----AYVALSNTLA--AAGK 468 (499)
Q Consensus 404 ~a~~~~~~~~~-~~---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~--~~g~ 468 (499)
+|+..|+++.. .| .. ..|..+..++...|++++|...+++.++..|..... .+..++.+|. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 88888887654 11 11 256677777888888888888888888776654111 2344555554 3456
Q ss_pred hHHHHHHHHHHH
Q 010837 469 WDSVTELREKMK 480 (499)
Q Consensus 469 ~~~A~~~~~~~~ 480 (499)
+++|.+.++++.
T Consensus 256 ~~~A~~~~~~~~ 267 (292)
T 1qqe_A 256 LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHhccCC
Confidence 777777776543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=1.3e-08 Score=89.89 Aligned_cols=238 Identities=11% Similarity=0.013 Sum_probs=160.6
Q ss_pred HHHhCCChhHHHHHHHhccCCC-hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEKN-VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
-..-.|++..++.-...+...+ ...-.-+.++|...|+++... ...|....+..+ ..+... .+...++
T Consensus 22 n~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~l-a~~~~~-----~a~~~l~ 90 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKVLDLY-VQFLDT-----KNIEELE 90 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHHHHHH-HHHHTT-----TCCHHHH
T ss_pred HHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHHHHHH-HHHhcc-----cHHHHHH
Confidence 3455788888887666654333 233334557888888876421 112332233333 333332 2667777
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
+..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 776655 344555567888899999999999999987442 4567778889999999999999999999874 56
Q ss_pred -----CHHHHHHHHHHH--cc--cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----
Q 010837 349 -----NYVTFLGALSAC--GH--AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----- 414 (499)
Q Consensus 349 -----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----- 414 (499)
+..+...+..++ .. .++..+|..+|+++..+ .|+...-..++.++.+.|++++|.+.++.+.+
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 355666666552 22 34899999999998733 35433334445588899999999999886544
Q ss_pred -------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 415 -------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 415 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+.+..++..+|......|+ +|.++++++.+..|..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 2355666566666666676 7889999999988876
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.9e-09 Score=96.24 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=134.7
Q ss_pred CCcCcchhHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-----------ChHhHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKC-------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-----------NVICSTSM 223 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 223 (499)
...++.+.|...+++.++. ..+....++..+...|...|++++|+..+++..+. ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4445555555555544431 21234557888889999999999999998887421 24577888
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHH
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 303 (499)
...|...|++++|.+.|++.. .++........+.....+..+...|...|++++|
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al-------------------------~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 146 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRAL-------------------------EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHH-------------------------HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH-------------------------HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence 888888899888888887542 1111111111112244566677778888888888
Q ss_pred HHHHHhcCCC-----------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHcc--
Q 010837 304 RRVFDHMQQK-----------NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-------CVQPNY-VTFLGALSACGH-- 362 (499)
Q Consensus 304 ~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~ll~~~~~-- 362 (499)
...|+++.+. ...++..+...+...|++++|...+++..+. ...+.. ..+..+...+..
T Consensus 147 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (283)
T 3edt_B 147 EYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKD 226 (283)
T ss_dssp HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCC
Confidence 8887776531 2346777788888888888888888887653 112211 122222222222
Q ss_pred ----cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 363 ----AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ----~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
...+..+...++... ...| ...++..+...|...|++++|.++|++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 227 KRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222344444444333 2223 456788889999999999999999887543
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=2.2e-09 Score=83.77 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=63.0
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|.+.++++.. +.+...+..+...+...|+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence 334444444444444444444421 1 11333444444444455555555555544433 2334455555555566666
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+++|.+.++++.+..+.. ...+..++.++.+.|++++|.+.++++.+
T Consensus 85 ~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 85 YDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666555544 45555666666666666666666666554
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.06 E-value=3.6e-09 Score=93.44 Aligned_cols=182 Identities=13% Similarity=0.021 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C---hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC-HHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N---VFTWTSMIDGYGKNGNPNQALELFCMMQECCV-QPN-YVTFLG 355 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 355 (499)
...+..+...+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|...|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34455566667777777777777777654 2 2 44566666777777777777777777766421 111 334555
Q ss_pred HHHHHcc--------cCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010837 356 ALSACGH--------AGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426 (499)
Q Consensus 356 ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 426 (499)
+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 5566666 67777777777777643 232 22222221111110000 112456778
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhc----------CChHHHHHHHHHHHhCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAA----------GKWDSVTELREKMKLRG 483 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 483 (499)
.|...|++++|+..++++++..|... ...+..++.+|... |++++|...++++.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 89999999999999999999887752 35788889999876 89999999999988743
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=5e-09 Score=81.65 Aligned_cols=131 Identities=15% Similarity=0.217 Sum_probs=97.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 45667777777888888888888877653 345666777777777888888888888887733 1 23556677788888
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 397 GRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
...|++++|.+.++++.. +.+..++..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 888888888888877765 345677788888888888888888888888876654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=7.1e-09 Score=91.57 Aligned_cols=202 Identities=10% Similarity=0.008 Sum_probs=136.9
Q ss_pred ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCC--chhHHHHHHHHHhcCChHHHHHHHHhcCC--C----ChhHH
Q 010837 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K----NVFTW 318 (499)
Q Consensus 247 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~ 318 (499)
+...+...-..+... |++++|...|+.+++..+... ...+..+..+|.+.|++++|...|+++.+ | ....+
T Consensus 14 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQ-GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHT-TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 344444444455555 889999999999988754321 45777889999999999999999999875 3 23467
Q ss_pred HHHHHHHHh--------CCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH
Q 010837 319 TSMIDGYGK--------NGNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389 (499)
Q Consensus 319 ~~l~~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 389 (499)
..+..++.. .|++++|...|+++.+.. |+. .....+ ..+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 778888888 999999999999998853 332 222111 111111100 01225
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHhcCCCCC--
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALLSSCRLH----------DDVEMANIAANEIFKLNANDR-- 452 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~-- 452 (499)
..+...|.+.|++++|+..|+++.. .|+ ...+..+..+|... |++++|...++++++..|...
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 5677788888999999998888765 233 45677777777755 888999999999999887761
Q ss_pred CchhHHHHHHHHhcCChH
Q 010837 453 PGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~ 470 (499)
..+...+..++.+.|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 123334444444444443
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.03 E-value=1.8e-08 Score=86.64 Aligned_cols=183 Identities=10% Similarity=-0.029 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC--CC----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ--KN----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PNY-VTFLGA 356 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~-~~~~~l 356 (499)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+.... +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445566677888888888888888764 32 245677778888888888888888888775321 111 233344
Q ss_pred HHHHcc------------------cCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 010837 357 LSACGH------------------AGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417 (499)
Q Consensus 357 l~~~~~------------------~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 417 (499)
..++.. .|+.++|...|+++.+ ..|+ ...+....... ......
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~P~~~~a~~a~~~l~----~~~~~~----------- 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR---GYPNSQYTTDATKRLV----FLKDRL----------- 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT---TCTTCTTHHHHHHHHH----HHHHHH-----------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH---HCcCChhHHHHHHHHH----HHHHHH-----------
Confidence 444432 4566666666666662 2332 22222111100 000000
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
......+...+.+.|++++|+..++++++..|... ...+..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778899999999999999999888762 257889999999999999999999988876543
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=2.1e-08 Score=90.12 Aligned_cols=192 Identities=11% Similarity=0.064 Sum_probs=124.0
Q ss_pred HHHHHhCCChhHHHHHHHhccCC-----C----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChh
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK-----N----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~ 263 (499)
...|...|++++|.+.|++..+- + ..+|+.+...|...|++++|+..|++..+ .+... +
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-----------l~~~~-g 111 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ-----------IFTHR-G 111 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHT-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------HHHHc-C
Confidence 45677889999998888776431 1 45778888888888888888888775431 00000 1
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc-CChHHHHHHHHhcCCC-----C----hhHHHHHHHHHHhCCChhH
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-GKIDDARRVFDHMQQK-----N----VFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~ 333 (499)
+... ...+++.+..+|... |++++|...|++..+- + ..++..+...+.+.|++++
T Consensus 112 ~~~~---------------~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 112 QFRR---------------GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp CHHH---------------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHH---------------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 1111 123456677778885 8888888888877641 1 3457777888888888888
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh------HHHHHHHHHH--hc
Q 010837 334 ALELFCMMQECCVQPNY------VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME------HYACMVDLLG--RA 399 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~ 399 (499)
|+..|++..+....... ..|..+..++...|++++|...|++.. .+.|+.. .+..++..+. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 88888888774322211 145666677778888888888888877 3444321 2334455553 45
Q ss_pred CCHHHHHHHHHhCCC
Q 010837 400 GSLEQALKFVLEMPE 414 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~ 414 (499)
+++++|++.|+++..
T Consensus 254 ~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR 268 (292)
T ss_dssp TTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccCCc
Confidence 668888888877764
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.99 E-value=1.1e-08 Score=91.52 Aligned_cols=177 Identities=10% Similarity=-0.018 Sum_probs=139.3
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhc
Q 010837 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380 (499)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 380 (499)
+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|++++|...++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--
Confidence 344455555554556677778888899999999999999998863 44667888889999999999999999999873
Q ss_pred CCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-CCchh
Q 010837 381 SMKPKMEHYAC-MVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPGAY 456 (499)
Q Consensus 381 ~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 456 (499)
..|+...... ....+...++.++|++.+++... +.+...+..+...+...|++++|+..++++++..|.. +...+
T Consensus 180 -~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 180 -QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp -GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred -hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3455433322 23336677788888888888765 4567889999999999999999999999999988765 25689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 457 VALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999988877543
No 96
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.98 E-value=3.1e-09 Score=87.62 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=88.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHH-HHhc
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL-LGRA 399 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 399 (499)
+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++.+... .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555555444321 223344444555555555555555555555422 1222211111111 1111
Q ss_pred CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHhcCChHHHHHHH
Q 010837 400 GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
+...+|+..+++... +.+...+..+...+...|++++|...++++++..|.+ +...+..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 122234555555544 2356777788888888888888888888888887764 2457888888888888888888888
Q ss_pred HHHHh
Q 010837 477 EKMKL 481 (499)
Q Consensus 477 ~~~~~ 481 (499)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.3e-09 Score=108.24 Aligned_cols=168 Identities=12% Similarity=-0.026 Sum_probs=97.2
Q ss_pred HhcCChHHHHHHHHhcC--------C---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 295 AKCGKIDDARRVFDHMQ--------Q---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 295 ~~~g~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
...|++++|.+.+++.. + .+...+..+..++...|++++|.+.|++..+.+ +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 45566666666666554 2 244555666666666666666666666665542 33445556666666666
Q ss_pred CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIA 440 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (499)
|++++|...|+++.+ +.| +...|..+..+|.+.|++++ ++.|+++.+ +.+...|..+..++.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666662 234 44555666666666666666 666666554 23455666666666666666666666
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 441 ANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
|+++++.+|.. ...+..++.++...|+
T Consensus 557 ~~~al~l~P~~-~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHF-TTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTH-HHHHHHHHHHTC----
T ss_pred HHhhcccCccc-HHHHHHHHHHHHccCC
Confidence 66666666554 5556666666554443
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=7.5e-08 Score=81.86 Aligned_cols=172 Identities=9% Similarity=-0.046 Sum_probs=119.3
Q ss_pred HHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC----cHHHHHHHHHHch
Q 010837 303 ARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG----LVDKGREIFESME 377 (499)
Q Consensus 303 a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 377 (499)
|.+.|++..+ .++..+..+...|...+++++|.+.|++..+.| +...+..+...|.. + +.++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 4444444433 356666677777777777777777777777654 45566666666666 5 7888888888776
Q ss_pred HhcCCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhh----cCCHHHHHHHHHHHH
Q 010837 378 RDYSMKPKMEHYACMVDLLGR----AGSLEQALKFVLEMPEKPN----SDVWAALLSSCRL----HDDVEMANIAANEIF 445 (499)
Q Consensus 378 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 445 (499)
+.+ +...+..|...|.. .+++++|+++|++..+..+ ...+..|...|.. .+++++|...+++..
T Consensus 81 -~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 -EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp -HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred -HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 322 44566667777766 7788888888888777433 6777777777777 778888888888887
Q ss_pred hcCCCCCCchhHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 010837 446 KLNANDRPGAYVALSNTLAAA-G-----KWDSVTELREKMKLRGV 484 (499)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 484 (499)
+.+.. +..+..|..+|... | ++++|...+++..+.|.
T Consensus 157 ~~~~~--~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRT--GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCT--THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCC--HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 77222 45777788877654 3 78888888888777664
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=5.7e-08 Score=85.77 Aligned_cols=239 Identities=9% Similarity=0.010 Sum_probs=160.9
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChhh-HHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHH
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKDIVV-YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (499)
++-..-.|++..++.-..++...+... -..+.+++... |..+. .....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAl-g~~~~---------~~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLAL-GQYQS---------QDPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHT-TCCCC---------CCSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHc-CCCcc---------CCCCCHHHHHHHHHHH-Hhccc----
Confidence 344567788888888666554322222 11222333222 22110 0011222223333333 33322
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcccCcHHHHHHHHHHchH
Q 010837 303 ARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV-QPNYVTFLGALSACGHAGLVDKGREIFESMER 378 (499)
Q Consensus 303 a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (499)
|...|++..+ ++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777776653 4556667888999999999999999999877653 23566788889999999999999999999983
Q ss_pred hcCCCC-----ChhHHHHHHHHH--HhcC--CHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 379 DYSMKP-----KMEHYACMVDLL--GRAG--SLEQALKFVLEMPEK-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 379 ~~~~~p-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
..| +..+...|+.++ ...| ++.+|..+|+++.++ |+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 356 355566666663 3334 899999999999874 554444555558999999999999999877752
Q ss_pred ----------CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 449 ----------ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 449 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.. +.++..++......|+ +|.++++++.+..
T Consensus 242 p~~~~k~~~~p~~-~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYK-PTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSH-HHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCC-HHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 444 7788777777777887 8899999988744
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.97 E-value=3.9e-10 Score=90.22 Aligned_cols=137 Identities=9% Similarity=-0.001 Sum_probs=72.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|++..+ +.| +...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchH
Confidence 3344555555555554331 221 22333445555555555555555555552 233 4455555556666666666
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHH-HHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIA-ANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
+|+..|++..+ +.+..+|..+...|.+.|++++|.+. ++++++..|.. +.+|......+.+.|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCc
Confidence 66666655554 22445566666666666665544433 46666666655 5556655555555553
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=7.3e-09 Score=102.69 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=121.6
Q ss_pred cCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 373 (499)
.|++++|...|+++.+ .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998875 356788899999999999999999999998853 445778888999999999999999999
Q ss_pred HHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHhc
Q 010837 374 ESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH---DDVEMANIAANEIFKL 447 (499)
Q Consensus 374 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 447 (499)
++..+. .| +...+..+..+|.+.|++++|.+.|++..+ +.+...+..+...+... |++++|.+.++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999843 45 577889999999999999999999998876 34678888899999999 9999999999999999
Q ss_pred CCCCCCchhHHHH
Q 010837 448 NANDRPGAYVALS 460 (499)
Q Consensus 448 ~~~~~~~~~~~l~ 460 (499)
++.. ...+..+.
T Consensus 158 ~p~~-~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGA-VEPFAFLS 169 (568)
T ss_dssp TCCC-SCHHHHTT
T ss_pred CCcc-cChHHHhC
Confidence 9887 66666555
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.3e-08 Score=86.33 Aligned_cols=156 Identities=10% Similarity=0.028 Sum_probs=111.9
Q ss_pred HHHHHhcCChHHHHHHHHhcCCC---ChhHHHH----------------HHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQK---NVFTWTS----------------MIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
...+...|++++|...|++..+. +...|.. +..++.+.|++++|...|++..+.. +-+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 34466677777777777776542 2334444 8888889999999999999988853 44677
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS--LEQALKFVLEMPEKPNS--DVWAALLS 426 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~--~~~~~l~~ 426 (499)
.+..+..++...|++++|...|+++.+ +.| +...+..+..+|...|+ .+.+...++.... |+. ..+..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHH
Confidence 888888889999999999999999883 356 67778888888766554 4456667766664 333 34444566
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++...|++++|+..|+++++..|..
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6777889999999999998887754
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=8.6e-09 Score=87.47 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHcccCcHHHHHHHHHHchHh
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPN-YVTFLG----------------ALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
.+......+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444566778899999999999999885 443 445666 888999999999999999999943
Q ss_pred cCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHhcCCCCCCc
Q 010837 380 YSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD--VEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 380 ~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~ 454 (499)
.| +...+..+..+|...|++++|+..|+++.+ +.+..++..+...|...|+ .+.+...++.... +.+...
T Consensus 84 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 84 ---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 56 678899999999999999999999999887 4567889988888866654 3445555555532 223223
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+...+.++...|++++|...|++..+..
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 55667788888999999999999988754
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.90 E-value=3.4e-09 Score=84.32 Aligned_cols=102 Identities=15% Similarity=0.018 Sum_probs=87.4
Q ss_pred CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH
Q 010837 381 SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457 (499)
Q Consensus 381 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (499)
.+.| +...+..+...+.+.|++++|+..|+++.. +.+...|..+..+|...|++++|+..|+++++..|.. +..|.
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~ 108 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVF 108 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHH
Confidence 5566 566778888888899999999999988876 4567888889999999999999999999999999887 88999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.++.+|.+.|++++|.+.|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999888754
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.90 E-value=8.7e-08 Score=86.74 Aligned_cols=221 Identities=10% Similarity=-0.011 Sum_probs=154.3
Q ss_pred CCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.|++++|.+++++..+..... +....++++.|...+... ...|...|++++|...|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466777777776654211000 112135666666666554 4568889999999999887
Q ss_pred cCCC-----C----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 310 MQQK-----N----VFTWTSMIDGYGKNGNPNQALELFCMMQECC---VQPN--YVTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 310 ~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
..+- + ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+..+|.. |++++|...|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7531 1 3478888999999999999999999875531 1122 3567788888988 999999999998
Q ss_pred chHhc---CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 376 MERDY---SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 376 ~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
...-. +... ...++..+...|.+.|++++|++.|++... .++ ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87422 1111 145788899999999999999999998875 122 23667777788888999999999999
Q ss_pred HHhcCCCCCCc----hhHHHHHHHHhcCChHHHHHH
Q 010837 444 IFKLNANDRPG----AYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 444 ~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~ 475 (499)
.+ ..|..... ....++.++ ..|+.+.+.++
T Consensus 221 al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 221 SY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred Hh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99 76654211 234455555 56777766663
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.89 E-value=2.8e-09 Score=85.12 Aligned_cols=123 Identities=12% Similarity=0.028 Sum_probs=103.8
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
|...+...|++++|+..++... ...| +...+..+...|.+.|++++|++.|++..+ +.+..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677889999999998877 4455 455677899999999999999999999877 457889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL-REKMKLR 482 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 482 (499)
++++|+..|+++++.+|.. +.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999999999988 89999999999999999887665 5777663
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.7e-08 Score=98.67 Aligned_cols=147 Identities=11% Similarity=-0.033 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
++.++|...+++..+... .+...+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 677888999988877643 2466788888999999999999999998765 356788889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA---GSLEQALKFVLEMPE 414 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 414 (499)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .| +...+..+..++... |++++|.+.+++..+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 988863 445778888899999999999999999998843 44 567888889999999 999999999988776
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.87 E-value=1.4e-07 Score=80.25 Aligned_cols=174 Identities=9% Similarity=-0.108 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHhCC----ChhHHHHHHHHH
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNG----NPNQALELFCMM 341 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g----~~~~a~~~~~~m 341 (499)
+|...|+...+.| ++..+..|...|...+++++|...|++..+. ++..+..+...|.. + ++++|.+.|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4666777777664 5677778888899999999999999998764 67788888888887 6 899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHh----cCCHHHHHHHHH
Q 010837 342 QECCVQPNYVTFLGALSACGH----AGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGR----AGSLEQALKFVL 410 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~ 410 (499)
.+.| +...+..+...|.. .+++++|..+|++.. + ..++ ...+..|...|.. .+++++|+++|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~--~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-R--DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-S--STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-H--cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8765 56777788888877 889999999999988 3 3342 6778888898988 889999999999
Q ss_pred hCCCC-CCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHhcCCC
Q 010837 411 EMPEK-PNSDVWAALLSSCRLH-D-----DVEMANIAANEIFKLNAN 450 (499)
Q Consensus 411 ~~~~~-~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~~ 450 (499)
+..+. .+...+..|...|... | +.++|...+++..+.|..
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 98764 6677888888887653 3 899999999999988754
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.85 E-value=1e-07 Score=96.30 Aligned_cols=168 Identities=12% Similarity=0.061 Sum_probs=137.1
Q ss_pred cChhhHHHHHHHHHHHH--------HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 010837 260 ISIETARKALEVHCQLI--------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN 328 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (499)
...++.++|.+.+++.. +.. +.+...+..+..+|.+.|++++|...|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 34488889999999988 322 33566788889999999999999999999875 3678899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
|++++|.+.|++..+.. +-+...+..+..++.+.|++++ .+.|+++.+ +.| +...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998863 3356788889999999999999 999999983 345 67789999999999999999999
Q ss_pred HHHhCCC-CCC-HHHHHHHHHHHhhcCC
Q 010837 408 FVLEMPE-KPN-SDVWAALLSSCRLHDD 433 (499)
Q Consensus 408 ~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 433 (499)
.|+++.+ .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999987 455 5678788888776555
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=1.1e-07 Score=81.81 Aligned_cols=174 Identities=14% Similarity=0.042 Sum_probs=123.1
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCC--chhHHHHHHHHHhcCChHHHHHHHHhcCC--CC-h---hHHHHHHHHHHh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQ--KN-V---FTWTSMIDGYGK 327 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~ 327 (499)
..+... |++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|+++.+ |+ . ..+..+..++..
T Consensus 12 ~~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 12 QQKLQD-GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHH-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 334444 889999999999998654322 34677789999999999999999999874 32 2 245555555554
Q ss_pred ------------------CCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhH
Q 010837 328 ------------------NGNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388 (499)
Q Consensus 328 ------------------~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~ 388 (499)
.|++++|...|+++.+. .|+. ........ ...+...+. ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---------~~ 149 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---------KY 149 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---------HH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---------HH
Confidence 57899999999999885 3433 22221110 001111111 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE-KPNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...+...|.+.|++++|+..|+++.+ .|+. ..+..+..++.+.|+.++|.+.++.+...+|..
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 23567788899999999999998876 3442 568888999999999999999999998888765
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=3e-08 Score=81.59 Aligned_cols=156 Identities=10% Similarity=-0.019 Sum_probs=119.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA-CG 361 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~ 361 (499)
.+..+...+.+.|++++|...|+++.+ .+...+..+...+...|++++|...+++..... |+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344566778899999999999999885 367788899999999999999999999887643 344433322211 11
Q ss_pred ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHHHHhhcCCHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN---SDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~ 436 (499)
..+....|...+++..+ ..| +...+..+..++...|++++|...|+++.. .|+ ...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22223346788888873 356 578888999999999999999999998876 343 5688899999999999999
Q ss_pred HHHHHHHHHh
Q 010837 437 ANIAANEIFK 446 (499)
Q Consensus 437 a~~~~~~~~~ 446 (499)
|...+++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.82 E-value=9.3e-08 Score=81.31 Aligned_cols=120 Identities=8% Similarity=-0.023 Sum_probs=63.8
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
...+...|++++|...|++.. .|+...+..+...|...|++++|++.|++... +.+...+..+..++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 334445555555555554442 23444555555555555555555555555443 23444555555555555556
Q ss_pred HHHHHHHHHHHhcCCCCCC----------------chhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 435 EMANIAANEIFKLNANDRP----------------GAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
++|.+.++++.+..+.. . ..+..++.+|.+.|++++|.+.+++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGN-QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTC-SEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCc-cHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66655555555544443 2 45555566666666666666666655543
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=7.6e-06 Score=78.85 Aligned_cols=338 Identities=11% Similarity=-0.005 Sum_probs=181.7
Q ss_pred CChhHHHHHhccCCC--CChHHHHHHHHHHHhCCC-hhhHHHHHHHHHHc-CCCC-ChhhHHHHhhhccccccCCcCcch
Q 010837 94 GALKYAGQMFDELPQ--RTLSAYNYMIAGYLKNGQ-VEESLSLVRKLVSS-GERP-DGYTFSMILKASTCCRSNVPLPRN 168 (499)
Q Consensus 94 ~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-g~~p-~~~~~~~ll~~~~~~~~~~~~~~~ 168 (499)
|+++.+..+|++... |++..|...+.-..+.++ .+....+|+..... |..| +...|...+..+... ....+..+
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~-~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKI-EDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSC-SSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhc-hhhhHHHH
Confidence 566666666666543 566666666655555442 34555666665543 3322 445555555443100 01234455
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHH-------------hCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCC
Q 010837 169 LGRMVHAQILKCDVKADDVLYTALVDSYV-------------KGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQG 231 (499)
Q Consensus 169 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g 231 (499)
.+..+++..+......-...|......-. ..+.+..|..+++.+.. .+...|...+.--...+
T Consensus 107 ~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 66666666665221111112222111110 01122233333333221 13335555444432221
Q ss_pred --C-----HHHHHHHHHhcCC--C-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChH
Q 010837 232 --F-----VEDAEEIFRKTVE--K-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301 (499)
Q Consensus 232 --~-----~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 301 (499)
- .+.+..+|+++.. | ....|...+.-+... ++.+.|..+++..... +.+...+. .|+...+.+
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~ 259 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEE 259 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCT
T ss_pred ccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchh
Confidence 1 2345667777662 3 344455555444443 7788999999988887 23332222 233222212
Q ss_pred HH-HHHHHhcC------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHcccCcH
Q 010837 302 DA-RRVFDHMQ------------QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG--ALSACGHAGLV 366 (499)
Q Consensus 302 ~a-~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--ll~~~~~~~~~ 366 (499)
+. ..+.+... ......|...+....+.++.+.|..+|++. .. ...+...|.. .+... ..++.
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~-~~~d~ 336 (493)
T 2uy1_A 260 AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY-ATGSR 336 (493)
T ss_dssp HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH-HHCCS
T ss_pred HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH-HCCCh
Confidence 21 11222110 012245666677776778899999999988 32 1234444432 22222 23368
Q ss_pred HHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+.|..+|+...+..+- +...+...++.....|+.+.|..+|+++.. ....|...+.--...|+.+.+..+++++.+
T Consensus 337 ~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998865432 334566677777888999999999999853 567788888777788999999888888775
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=6.8e-07 Score=80.24 Aligned_cols=163 Identities=7% Similarity=-0.026 Sum_probs=123.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCV-QPNYV----TFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHY 389 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~ 389 (499)
...+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|...++.+.....-.++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999877432 22221 3335667778888999999999999842211223 3368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----CCch
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE--------KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----RPGA 455 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~ 455 (499)
+.+...|...|++++|+..|+++.+ .+ ...++..+...|...|++++|...++++++..... ...+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999988773 11 23478889999999999999999999988743222 1467
Q ss_pred hHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 010837 456 YVALSNTLAAAGK-WDSVTELREKMKL 481 (499)
Q Consensus 456 ~~~l~~~~~~~g~-~~~A~~~~~~~~~ 481 (499)
|..++.+|.+.|+ +++|.+.+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 6999998887654
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=2.4e-08 Score=79.41 Aligned_cols=95 Identities=11% Similarity=0.007 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+.+.|++++|+..|+++.. +.+...|..+..+|...|++++|+..++++++.+|.. +..+..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence 34445555555555666666665555543 2345555555555556666666666666666555554 55555566666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010837 464 AAAGKWDSVTELREKMKL 481 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~ 481 (499)
...|++++|.+.+++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666665555544
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.79 E-value=2.8e-07 Score=82.77 Aligned_cols=165 Identities=6% Similarity=-0.076 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHcccCcHHHHHHHHHHchHhcC--CCCC--h
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY-----VTFLGALSACGHAGLVDKGREIFESMERDYS--MKPK--M 386 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~--~ 386 (499)
..+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++....... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677788899999999999888775322111 2234455667788899999999988873211 1111 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----C
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE----KPN-----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----R 452 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~ 452 (499)
.+|+.+...|...|++++|+..|+++.. .|+ ..++..+...|...|++++|...++++++..... .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999988763 222 2588889999999999999999999988643221 1
Q ss_pred CchhHHHHHHHHhcCChHHH-HHHHHHHH
Q 010837 453 PGAYVALSNTLAAAGKWDSV-TELREKMK 480 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 480 (499)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788899999999999999 77677654
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.77 E-value=6e-08 Score=74.64 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+......|.+.|++++|++.|++..+ +.+..+|..+..++...|++++|++.++++++.++.. ...|..++.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHH
Confidence 444455555555555555555555443 2344555555555555555555555555555555554 5555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 010837 466 AGKWDSVTELREKMKL 481 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~ 481 (499)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.74 E-value=7.6e-08 Score=74.04 Aligned_cols=108 Identities=9% Similarity=-0.002 Sum_probs=82.9
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS 427 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 427 (499)
..+......|.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.|++..+ +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 35666677788888888888888887732 44 667788888888888888888888887766 4567788888888
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+...|++++|++.|+++++..|.. ..++..+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence 888888888988888888888877 6665555443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=1.8e-07 Score=79.46 Aligned_cols=127 Identities=10% Similarity=-0.100 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
+..+...+...|++++|...|++...++...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44566677788888888888888877777888888888888888888888888877753 44566777777888888888
Q ss_pred HHHHHHHHHchHhcCC-------------CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 367 DKGREIFESMERDYSM-------------KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~-------------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
++|...|+...+...- .| ....+..+..+|...|++++|.+.|+++..
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888887742111 11 124455555556666666666666655544
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.72 E-value=1.4e-07 Score=76.37 Aligned_cols=126 Identities=12% Similarity=0.013 Sum_probs=90.1
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...|+...+. .| +...+..+..++...|++++|++.+++... +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555566666777777777777777632 23 566677777777778888888887777665 34567788888888
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH--HHHHhcCChHHHHHHHHHHHh
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALS--NTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~ 481 (499)
...|++++|.+.++++.+..+.. ...+..+. ..+.+.|++++|.+.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888888887766 55554433 347778888888888876543
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.71 E-value=6.6e-06 Score=73.36 Aligned_cols=156 Identities=10% Similarity=0.004 Sum_probs=104.9
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc------H
Q 010837 298 GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPN--QALELFCMMQECCVQPNYVTFLGALSACGHAGL------V 366 (499)
Q Consensus 298 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~ 366 (499)
+++++++.+++++.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 667788888887764 46667777777777777777 8888888888764 3466666655555555555 7
Q ss_pred HHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 367 DKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQ-ALKFVLEMPE-----KPNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
+++.+.++.+... .| |...|+-+...+.+.|+... +..+..++.+ ..+...+..++.++.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 7788888777732 45 66777777777777776433 4455555543 2466777777777777788888888
Q ss_pred HHHHHHh-cCCCCCCchhHH
Q 010837 440 AANEIFK-LNANDRPGAYVA 458 (499)
Q Consensus 440 ~~~~~~~-~~~~~~~~~~~~ 458 (499)
+++.+.+ .+|.. ...|..
T Consensus 280 ~~~~l~~~~Dpir-~~yW~~ 298 (306)
T 3dra_A 280 VYDLLKSKYNPIR-SNFWDY 298 (306)
T ss_dssp HHHHHHHTTCGGG-HHHHHH
T ss_pred HHHHHHhccChHH-HHHHHH
Confidence 8887765 45544 344443
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.69 E-value=1.4e-06 Score=77.92 Aligned_cols=124 Identities=8% Similarity=-0.001 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTS-MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 362 (499)
.+..+...+.+.|++++|...++++.. |+...... ....+...++.++|...+++..... +.+...+..+..++..
T Consensus 153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 334444455555555555555555443 22221111 1122334444444555555544431 2334444445555555
Q ss_pred cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 010837 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (499)
.|++++|...|.++.+...-..+...+..++..|...|+.++|...++
T Consensus 232 ~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 232 VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 555555555555555221000113344445555555555544444443
No 123
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=2.1e-07 Score=72.10 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLS 426 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 426 (499)
...+..+...+...|++++|...|++.. ...| +...+..+..+|...|++++|++.++++.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445555555555666666666666555 2233 445555556666666666666666655544 234556666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
++...|++++|.+.++++.+..+.. ...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhc
Confidence 6777777777777777777666655 556666666665554
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.68 E-value=1.8e-07 Score=84.60 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=148.7
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
.+..++|.+++++..+.... . . +...++++.|...|.++ ...|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~--~-------~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S--F-------MKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C--S-------SSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c--c-------cCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 37778899999888765331 1 0 11157889998887764 56788899999999999887
Q ss_pred HHcCC---CC--CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 342 QECCV---QP--NYVTFLGALSACGHAGLVDKGREIFESMERDYSM--KP--KMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 342 ~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
.+... .+ -..+|..+..+|...|++++|...|++..+-..- .+ ...++..+...|.. |++++|++.|++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 65311 11 1347888889999999999999999887632111 12 24577888889988 9999999999887
Q ss_pred CC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-----CchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 413 PE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-----PGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 413 ~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.. ..+ ..++..+...+...|++++|++.++++++..+... ...+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 65 111 46788899999999999999999999998654431 236677788888999999999999998
Q ss_pred H
Q 010837 480 K 480 (499)
Q Consensus 480 ~ 480 (499)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.68 E-value=1.2e-06 Score=78.20 Aligned_cols=213 Identities=13% Similarity=0.098 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC--ChHHHHHHHHhcCC---CChhHHHHHHHHH----HhC---CC
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQ---KNVFTWTSMIDGY----GKN---GN 330 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---g~ 330 (499)
...++|+...+.++..++. +...|+.--.++...| ++++++..++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 4445677777777665432 3345565566666777 88889888888775 3455666554444 444 78
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH--HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC------
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD--KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS------ 401 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~------ 401 (499)
+++++++++++.+.. +-|..+|+.-.-++.+.|.++ ++.+.++.+.+. .| |...|+.-...+...++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhh
Confidence 999999999999864 557777777666667777777 999999999943 44 66677766666666666
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHhcC---CCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 402 LEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV-EMANIAANEIFKLN---ANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 402 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
++++++.++++.. +-|...|+.+...+.+.|+. +.+..+.+++.+.+ +.. +..+..++.+|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHccCCHHHHHHH
Confidence 8899999988775 46788898888888888774 44556777777655 444 77889999999999999999999
Q ss_pred HHHHHh
Q 010837 476 REKMKL 481 (499)
Q Consensus 476 ~~~~~~ 481 (499)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999864
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.67 E-value=1.6e-07 Score=73.98 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++.+|.. +..+..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence 34445555556666666666666666544 2345566666666666666666666666666666655 56666666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 010837 464 AAAGKWDSVTELREKMKL 481 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~ 481 (499)
...|++++|.+.+++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666554
No 127
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.64 E-value=5.9e-06 Score=79.62 Aligned_cols=339 Identities=9% Similarity=-0.019 Sum_probs=187.1
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc-CCC-CchhHHHHHHHHHHh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVK-ADDVLYTALVDSYVK 198 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~ 198 (499)
..-.|+++.+..+|++.... .|+...|...+.-..+.+ ...+....+|+..+.. |.. .+...|...+..+..
T Consensus 24 ~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~----~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~ 97 (493)
T 2uy1_A 24 LYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS----QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGK 97 (493)
T ss_dssp HHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC--------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSS
T ss_pred HCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHh
Confidence 46678999999999998874 578888887777653221 1235667777776654 533 366677777765542
Q ss_pred ----CCChhHHHHHHHhccCC---Ch-HhHHHHHHHHHh-------------CCCHHHHHHHHHhcC----CCChhhHHH
Q 010837 199 ----GGKTSYARIVFDMMLEK---NV-ICSTSMISGFMS-------------QGFVEDAEEIFRKTV----EKDIVVYNA 253 (499)
Q Consensus 199 ----~g~~~~A~~~~~~~~~~---~~-~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~----~~~~~~~~~ 253 (499)
.|+.+.+.++|++.... +. ..|......-.. .+.+..|..+++.+. ..+...|..
T Consensus 98 ~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~ 177 (493)
T 2uy1_A 98 IEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR 177 (493)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 35678888888888552 11 223222211100 011222333333222 112223433
Q ss_pred HHHHHhcCh-h-----hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-CCh-hHHHHHHHHH
Q 010837 254 MIEGYSISI-E-----TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNV-FTWTSMIDGY 325 (499)
Q Consensus 254 ll~~~~~~~-~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-~~~~~l~~~~ 325 (499)
.+.--.... + ..+.+..++++++...+ .+...|...+..+.+.|+.+.|..+|++... |.. ..|. .|
T Consensus 178 y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y 252 (493)
T 2uy1_A 178 LIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YY 252 (493)
T ss_dssp HHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HH
T ss_pred HHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HH
Confidence 333321110 0 12345567777766543 3456666667777777888888888876543 221 1222 22
Q ss_pred HhCCChhHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHH
Q 010837 326 GKNGNPNQALELFCMMQECC---------VQP---NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~---------~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 393 (499)
....+.++. ++.+.+.- ..+ ....|...+..+.+.++++.|..+|+++ +..+ .+..+|...+
T Consensus 253 ~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A 326 (493)
T 2uy1_A 253 GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCA 326 (493)
T ss_dssp HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHH
T ss_pred HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHH
Confidence 222222222 22222210 001 1133555555555667788888888887 2322 2334443323
Q ss_pred HHHHh-cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 394 DLLGR-AGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 394 ~~~~~-~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..-.. .++.+.|.++|+...+ -| +...+...+.-....|+.+.|..+|+++. . ....|...+..-...|+.+
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k-~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE----K-TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----C-BHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----H-HHHHHHHHHHHHHHCCCHH
Confidence 22222 2368888888887665 12 34455556666677888888888888862 2 2566777777777888888
Q ss_pred HHHHHHHHHHh
Q 010837 471 SVTELREKMKL 481 (499)
Q Consensus 471 ~A~~~~~~~~~ 481 (499)
.+.+++++..+
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877663
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=7e-08 Score=86.03 Aligned_cols=188 Identities=10% Similarity=-0.040 Sum_probs=125.9
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
...+..+...+.+.|++++|...|++..+ | +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34566677788889999999999988764 3 67788888899999999999999999888753 44567788888889
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHH---HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDL---LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
...|++++|...|+...+. .|+ ...+...+.. ..+...+.. ......+.+......+.. + ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 9999999999999887732 231 1111111111 222222222 122222333333333322 2 3688899
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAA-GKWDSVTELREKMKLR 482 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 482 (499)
|.+.++++.+..+.. ......+...+.+. +++++|.++|++..+.
T Consensus 154 A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDD-GHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCH-HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccch-hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999888888877755 55556666666665 6788899999887654
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.63 E-value=1.6e-07 Score=86.02 Aligned_cols=160 Identities=13% Similarity=0.060 Sum_probs=104.3
Q ss_pred CChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 298 GKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 298 g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
+++++|...|+...+ | +...+..+...+.+.|++++|...|++..+.. |+...+ ..+.+..+-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-
Confidence 344444444444332 1 34456666666777777777777777666542 221000 001111000
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (499)
. .....|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|++++|+..|+++++..|..
T Consensus 193 ~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~- 263 (336)
T 1p5q_A 193 A--------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN- 263 (336)
T ss_dssp H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-
T ss_pred H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-
Confidence 0 0135677788888888888888888887766 4567788888888888899999999999998888877
Q ss_pred CchhHHHHHHHHhcCChHHH-HHHHHHHH
Q 010837 453 PGAYVALSNTLAAAGKWDSV-TELREKMK 480 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 480 (499)
..++..+..++.+.|++++| ...++.|.
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888888 34555553
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=3.1e-07 Score=70.14 Aligned_cols=113 Identities=16% Similarity=0.174 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
..+..+...+...|++++|.+.++++.... +.+...+..+...+.+.|++++|...++++.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555555666666666666666665321 12445556666666666666666666666544 33555666666777
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
...|++++|...++++.+..|.. ...+..+..++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHhc
Confidence 77777777777777777766655 55566665555443
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.62 E-value=2.6e-07 Score=71.27 Aligned_cols=117 Identities=5% Similarity=-0.091 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS 427 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 427 (499)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++... +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 3445556666666777777777777766321 12455666677777777777777777776654 3346677777778
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
+...|++++|...++++.+..+.. ...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHhcC
Confidence 888888888888888888877766 67777777777777764
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=5.6e-07 Score=78.41 Aligned_cols=184 Identities=10% Similarity=-0.030 Sum_probs=128.4
Q ss_pred hcCChHHHHHHHHhcCCC---ChhHHHHH-------HHHHHhCCChhHHHHHHHHHHHcCCCCC----------------
Q 010837 296 KCGKIDDARRVFDHMQQK---NVFTWTSM-------IDGYGKNGNPNQALELFCMMQECCVQPN---------------- 349 (499)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~---~~~~~~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------- 349 (499)
..++.+.|.+.|.++.+- ....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 467888888888887652 44566666 3455555555555555544333 2221
Q ss_pred ------HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 010837 350 ------YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS----D 419 (499)
Q Consensus 350 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~ 419 (499)
......+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233455667788999999999988872 3464336666677888999999999999877654433 3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
.+..+..++...|++++|+..|++.......| ........+.++.+.|+.++|..+|+++...+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67778888999999999999999887533213 234677888889999999999999999887543
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=9.7e-08 Score=75.83 Aligned_cols=97 Identities=6% Similarity=-0.050 Sum_probs=62.8
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+.+.|++++|...|+.+.. +.| +...|..+..+|...|++++|++.|+++.. +.+...|..+..+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555666666777777777766662 234 556666666677777777777777766655 33456666677777
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 429 RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...|++++|+..|+++++..+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777777666544
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=1.2e-07 Score=77.96 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=89.9
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH-HHhcCCH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL-LGRAGSL 402 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~~~~ 402 (499)
+...|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.+. .| +...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 345678888888888877753 446677888888888888888888888888743 23 56667777777 6678887
Q ss_pred --HHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 403 --EQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 403 --~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++|...++++.. +.+...+..+...+...|++++|...++++++..+..
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 888888887765 3456777788888888888888888888888877765
No 135
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=1.1e-06 Score=73.85 Aligned_cols=150 Identities=11% Similarity=-0.068 Sum_probs=67.0
Q ss_pred hcCChHHHHH---HHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHcccCcHH
Q 010837 296 KCGKIDDARR---VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC----CVQP-NYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 296 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~ 367 (499)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+. +..+ ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 433322223445555556666666666666666555431 1111 1233444555555555555
Q ss_pred HHHHHHHHchHh---cCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCH----HHHHHHHHHHhhcCCH
Q 010837 368 KGREIFESMERD---YSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPNS----DVWAALLSSCRLHDDV 434 (499)
Q Consensus 368 ~a~~~~~~~~~~---~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~----~~~~~l~~~~~~~~~~ 434 (499)
+|...+++..+. .+-.+ ....+..+...+...|++++|.+.+++... ..+. .++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555554422 11011 122344444555555555555555544432 1111 1233444444445555
Q ss_pred HHHHHHHHHHH
Q 010837 435 EMANIAANEIF 445 (499)
Q Consensus 435 ~~a~~~~~~~~ 445 (499)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 136
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=6.1e-07 Score=75.42 Aligned_cols=153 Identities=10% Similarity=0.007 Sum_probs=70.0
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchH---hcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER---DYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
..|++++|.++++.+.. ........+..+...+...|++++|...+++... ..+..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 1112334455555555555555555555555442 111222 334455555555555555
Q ss_pred HHHHHHHHhCCC----CC-C----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHhcCC
Q 010837 403 EQALKFVLEMPE----KP-N----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----RPGAYVALSNTLAAAGK 468 (499)
Q Consensus 403 ~~a~~~~~~~~~----~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~ 468 (499)
++|.+.+++... .+ + ...+..+...+...|++++|...+++..+..... ...++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 555555554433 11 1 1234445555555555555555555554321110 01224455555555555
Q ss_pred hHHHHHHHHHHH
Q 010837 469 WDSVTELREKMK 480 (499)
Q Consensus 469 ~~~A~~~~~~~~ 480 (499)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=3.9e-07 Score=68.05 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=74.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CCCchhHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN--DRPGAYVALS 460 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 460 (499)
+...+..+...+...|++++|...|+++.. +.+...+..+...+...|++++|.+.++++++..+. . ...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHH
Confidence 345566677777778888888888777655 345667777778888888888888888888887776 5 67778888
Q ss_pred HHHHhc-CChHHHHHHHHHHHhCC
Q 010837 461 NTLAAA-GKWDSVTELREKMKLRG 483 (499)
Q Consensus 461 ~~~~~~-g~~~~A~~~~~~~~~~~ 483 (499)
.++.+. |++++|.+.+++..+.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888 88888888888877654
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2.2e-06 Score=76.80 Aligned_cols=157 Identities=11% Similarity=-0.027 Sum_probs=120.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCC-----C----hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQK-----N----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PN----YVTFLG 355 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 355 (499)
.+..+...|++++|..++++..+. + ...+..+...+...|++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356788899999999999887642 1 113345667777788999999999999874322 22 236888
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhc----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC-HHHHH
Q 010837 356 ALSACGHAGLVDKGREIFESMERDY----SMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPN-SDVWA 422 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~-~~~~~ 422 (499)
+..+|...|++++|...|+++.+.. +..+ ...++..+...|.+.|++++|++.+++..+ .+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999888421 2222 234788899999999999999999988765 122 57889
Q ss_pred HHHHHHhhcC-CHHHHHHHHHHHHh
Q 010837 423 ALLSSCRLHD-DVEMANIAANEIFK 446 (499)
Q Consensus 423 ~l~~~~~~~~-~~~~a~~~~~~~~~ 446 (499)
.+..++...| ++++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 57999999998876
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=1.5e-06 Score=78.00 Aligned_cols=159 Identities=11% Similarity=-0.038 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC--C-C------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCC--HHHH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQ--K-N------VFTWTSMIDGYGKNGNPNQALELFCMMQECCV---QPN--YVTF 353 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~--~-~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---~p~--~~~~ 353 (499)
...+..+...|++++|.+.+.+..+ + . ...+..+...+...|++++|...+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3355667788888888888876543 1 1 12234456667778899999999988875321 112 3478
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchH---hcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C------C-CHHH
Q 010837 354 LGALSACGHAGLVDKGREIFESMER---DYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE-K------P-NSDV 420 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~------~-~~~~ 420 (499)
+.+...|...|++++|...++++.. ..+..+ ...++..+...|...|++++|++.+++... . . -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8888889999999999999988872 222222 125788888999999999999999887664 1 1 1567
Q ss_pred HHHHHHHHhhcCCHHHH-HHHHHHHHh
Q 010837 421 WAALLSSCRLHDDVEMA-NIAANEIFK 446 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a-~~~~~~~~~ 446 (499)
|..+...|...|++++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888999999999999 777887765
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=7e-07 Score=68.59 Aligned_cols=93 Identities=13% Similarity=0.027 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+..+...+.+.|++++|+..|++... +.+...|..+..++...|++++|+..++++++.+|.. ...+..++.+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 344444455555555555555555443 2344555555555555555555555555555555554 5555555555555
Q ss_pred cCChHHHHHHHHHHHh
Q 010837 466 AGKWDSVTELREKMKL 481 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~ 481 (499)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555544
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=1.3e-06 Score=70.56 Aligned_cols=127 Identities=10% Similarity=-0.045 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .| +...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 345666667777777777777777776642 335666777777777778888888888777732 23 5666777777
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHH--HHHHHhhcCCHHHHHHHHHHHHh
Q 010837 395 LLGRAGSLEQALKFVLEMPE--KPNSDVWAA--LLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
++...|++++|.+.|+++.. +.+...+.. ++..+...|++++|.+.++....
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 78888888888888877665 234444433 33336677888888887776654
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.51 E-value=5.2e-07 Score=69.43 Aligned_cols=94 Identities=7% Similarity=-0.031 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC------chhHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP------GAYVAL 459 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 459 (499)
.+..+...+.+.|++++|++.|++..+ +.+..+|..+..+|...|++++|++.++++++..+.... .+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344555556666666666666665544 334555666666666666666666666666655443311 245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 010837 460 SNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+.++...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.49 E-value=7.3e-07 Score=72.17 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALL 425 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~ 425 (499)
+...+..+...+...|++++|...|++..+. .| +...|..+..+|.+.|++++|+..|++... +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4567788888899999999999999999843 45 677888999999999999999999998876 45678899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCCCchh
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAY 456 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (499)
.++...|++++|.+.|+++++..+.. ...+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~ 116 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNG-GSDA 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSS-CCHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCc-hHHH
Confidence 99999999999999999999988877 5544
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=3.1e-07 Score=72.88 Aligned_cols=99 Identities=8% Similarity=-0.037 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLS 426 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~ 426 (499)
...+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|++.|+++.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 345566667777888888888888887732 34 666777788888888888888888887765 345677777888
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++...|++++|...|+++++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 8888888888888888888877654
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=4.4e-07 Score=74.56 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=49.2
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH-HhhcCCH--HH
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS-CRLHDDV--EM 436 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~--~~ 436 (499)
.|++++|...++..... .| +...+..+...|...|++++|+..|+++.. +.+...+..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34444444444444421 12 334444444444444444444444444433 2233344444444 3344444 44
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
|...++++++..|.. ...+..++.+|...|++++|...+++..+
T Consensus 100 A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444444443 44444444444444444444444444443
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=8e-07 Score=74.53 Aligned_cols=169 Identities=9% Similarity=0.015 Sum_probs=97.4
Q ss_pred HHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
....|+++++.+.++.-.+. ....+..+...+...|++++|...|++..+.. |+...+... ....-.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~~~ 83 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLDKK 83 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHHHH
Confidence 34445555555555543321 33455566666677777777777777766642 211100000 000000
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.. .....+..+..+|...|++++|+..+++... +.+...+..+..++...|++++|...|+++++..
T Consensus 84 ---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 84 ---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp ---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 00 0125677778888888888888888887765 4567788888888999999999999999999888
Q ss_pred CCCCCchhHHHHHHHHhcCChHHHH-HHHHHHHhCCC
Q 010837 449 ANDRPGAYVALSNTLAAAGKWDSVT-ELREKMKLRGV 484 (499)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~ 484 (499)
|.. ..++..+..++...|+.+++. ..+..|...+.
T Consensus 153 p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~ 188 (198)
T 2fbn_A 153 PNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188 (198)
T ss_dssp TTC-HHHHHHHHHHHHHHHHHHC--------------
T ss_pred CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 877 788888888888888877776 56666655543
No 147
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.46 E-value=6.9e-07 Score=68.05 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
.+..+...+.+.|++++|+..|+++.. +.+...|..+..++...|++++|+..++++++.+|.. ...+..++.+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 355667778899999999999998876 4477888889999999999999999999999999987 8899999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 010837 466 AGKWDSVTELREKMKLR 482 (499)
Q Consensus 466 ~g~~~~A~~~~~~~~~~ 482 (499)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988764
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.46 E-value=1.8e-06 Score=67.25 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 010837 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAAL 424 (499)
Q Consensus 348 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l 424 (499)
.+...+..+...+...|++++|...|+..... .| +...+..+..++...|++++|+..+++... +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34556666666666667777777776666632 23 455666666666666666666666666554 3345566666
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
..++...|++++|...++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 66666666666666666666665544
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-06 Score=67.61 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=88.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+...+..+...+...|++++|.+.|++... +.+...+..+...+...|++++|...++++++..+.. ...+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence 567788899999999999999999998776 3478899999999999999999999999999998876 8899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 010837 463 LAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~ 483 (499)
|.+.|++++|.+.+++..+..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999988754
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=1.5e-06 Score=66.11 Aligned_cols=97 Identities=19% Similarity=0.271 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+...|++++|.+.++++.. +.+..++..+...+...|++++|...++++.+..+.. ..++..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence 56788889999999999999999998875 4567889999999999999999999999999998876 78899999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 010837 464 AAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~ 483 (499)
...|++++|.+.++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999988754
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.1e-06 Score=67.46 Aligned_cols=94 Identities=9% Similarity=-0.060 Sum_probs=58.6
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+......+.+.|++++|...|++..+. .| +...|..+..+|.+.|++++|+..+++... +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3444555556666666666666666522 23 455666666666666666666666666554 33455666666677
Q ss_pred hhcCCHHHHHHHHHHHHhcC
Q 010837 429 RLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~ 448 (499)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 77777777777777776665
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=5.7e-06 Score=72.06 Aligned_cols=126 Identities=10% Similarity=-0.050 Sum_probs=62.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHh
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGR 398 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~ 398 (499)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+... ... .|. ...+..+..++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHHH
Confidence 344455555555555555555442 2332233333334555566666666655443 111 111 2244555555666
Q ss_pred cCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 399 AGSLEQALKFVLEMPEK---PN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.|++++|++.|++.... |. .........++.+.|+.++|...|+++...+|.
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666655432 21 224444555556666666666666666665554
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=2.3e-06 Score=64.34 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+..+...+...|++++|.+.|++... +.+...+..+...+...|++++|...++++.+..+.. ...+..++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHH
Confidence 33444444444444444444444433 2234444444444445555555555555555444443 44444555555555
Q ss_pred CChHHHHHHHHHHHh
Q 010837 467 GKWDSVTELREKMKL 481 (499)
Q Consensus 467 g~~~~A~~~~~~~~~ 481 (499)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=4.1e-06 Score=66.06 Aligned_cols=98 Identities=5% Similarity=-0.085 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAAL 424 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l 424 (499)
..+..+...+...|++++|...|++.. ...|+ ...+..+..+|...|++++|++.+++... +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 334444444444455555555544444 22332 33444444445555555555555544433 2234444555
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..++...|++++|...++++++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 555555555555555555555554443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.41 E-value=2.3e-06 Score=64.37 Aligned_cols=105 Identities=13% Similarity=0.112 Sum_probs=59.8
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...++..... .| +...+..+..++...|++++|...+++... +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555556666666666655522 22 445555556666666666666666655544 23455666666666
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
...|++++|.+.++++.+.++.. ...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 66677777777777666666554 44444433
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=1.2e-06 Score=69.01 Aligned_cols=97 Identities=14% Similarity=-0.021 Sum_probs=65.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~ 428 (499)
.+..+...+...|++++|...|+.+... .| +...|..+..+|.+.|++++|+..|++... +.+...+..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444555666677777777777776632 34 556666677777777777777777776655 34456666777777
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 429 RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...|++++|...++++++..|..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777777777777777776654
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=2.4e-06 Score=69.08 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=75.3
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+..+|...|++++|...+++..+. .| +...|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV---DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 45567777888888888888888888887753 346677788888888888888888888888732 44 56778888
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
..+|...|++++|++.|++...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888887765
No 158
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=2.3e-06 Score=78.29 Aligned_cols=119 Identities=13% Similarity=-0.018 Sum_probs=80.2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC--CC----------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KN----------------VFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788899999999999999999998764 32 356666666666677777777777766664
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 405 (499)
. +.+...+..+..+|...|++++|...|+++.+ +.| +...+..+..++.+.|++++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 33455666666666666666666666666662 234 445556666666666666655
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.38 E-value=2.5e-06 Score=65.50 Aligned_cols=112 Identities=16% Similarity=0.016 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++..... .| +...+..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHH
Confidence 34444455555555555555555554431 223444555555555555555555555555522 22 34445555555
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 396 LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
+...|++++|.+.|++... +.+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 5555555555555555443 223444444444444443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=2.3e-06 Score=66.65 Aligned_cols=96 Identities=8% Similarity=-0.072 Sum_probs=54.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+...+..+...+...|++++|+..|++... +.+...|..+..++...|++++|...++++++.++.. ...+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHH
Confidence 344555555555666666666666655443 2334555555555666666666666666666655554 5555566666
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 010837 463 LAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~ 481 (499)
|...|++++|...+++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666665555543
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=6e-06 Score=65.11 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=88.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
+...+..+...+...|++++|.+.|++... .|+ ...+..+...+...|++++|+..++++++..+.. ...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHH
Confidence 567788899999999999999999999876 466 6788889999999999999999999999998877 8899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 010837 460 SNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.+|...|++++|.+.+++..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999988754
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.32 E-value=0.00028 Score=63.65 Aligned_cols=177 Identities=11% Similarity=0.012 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc-C-ChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChh------
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-G-KIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPN------ 332 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~------ 332 (499)
..++++.+++.++...++ +..+|+.-..++.+. + ++++++.+++++.+. |..+|+.-.-.+.+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp CHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 345555555555554332 333444444444444 5 677888888887763 5556665555555545555
Q ss_pred --HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc-------HHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 333 --QALELFCMMQECCVQPNYVTFLGALSACGHAGL-------VDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 333 --~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
++++.++++.+.. .-|...|+.....+.+.+. ++++.+.++++.. ..| |...|+-+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCC
Confidence 7888888887764 4466677776666666664 6777777777773 345 566666655555555442
Q ss_pred --------------------HHHHHHHHhCCC--------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 403 --------------------EQALKFVLEMPE--------KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 403 --------------------~~a~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
....+...++.. .++...+..|+..|...|+.++|.++++.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 233333333332 1445566666666666666666666666654
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.29 E-value=9.3e-07 Score=74.12 Aligned_cols=139 Identities=9% Similarity=-0.019 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CCh----------------hHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNV----------------FTWTSMID 323 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~----------------~~~~~l~~ 323 (499)
+.++.+.+.++...+... .....+..+...+.+.|++++|...|++..+ .+. ..|..+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp ----CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 444455544443222111 1344567788889999999999999998764 222 56666666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~ 402 (499)
++...|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+...+. .| +...+..+..++...++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776642 335556666666677777777777777766622 33 445555566655555555
Q ss_pred HHHH
Q 010837 403 EQAL 406 (499)
Q Consensus 403 ~~a~ 406 (499)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 5544
No 164
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.29 E-value=9e-06 Score=72.25 Aligned_cols=188 Identities=9% Similarity=-0.030 Sum_probs=123.2
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
.+...+..+...+...|++++|...++..++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 355677888889999999999999999999886 45788999999999999999999999998764 46678999999
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCCh-hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010837 120 GYLKNGQVEESLSLVRKLVSSGERPDG-YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198 (499)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (499)
++...|++++|++.|++..+.+ |+. ..+...+... . ..... ..+........+.+......+... .
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~-----~---~~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSA-----L---RIAKK-KRWNSIEERRIHQESELHSYLTRL--I 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHH-----H---HHHHH-HHHHHHHHTCCCCCCHHHHHHHHH--H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHH-----H---HHHHH-HHHHHHHHHHHhhhHHHHHHHHHH--H
Confidence 9999999999999999987642 211 0111111110 0 00011 112222333344444444444332 2
Q ss_pred CCChhHHHHHHHhccCCC---hHhHHHHHHHHHhC-CCHHHHHHHHHhcC
Q 010837 199 GGKTSYARIVFDMMLEKN---VICSTSMISGFMSQ-GFVEDAEEIFRKTV 244 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~-g~~~~a~~~~~~~~ 244 (499)
.|++++|++.++...+.+ ......+...+.+. +.+++|.++|.+..
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 577788877777765532 22333333334443 55677777776665
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=6.2e-06 Score=78.50 Aligned_cols=188 Identities=9% Similarity=-0.060 Sum_probs=117.0
Q ss_pred HHHhcCChHHHHHHHHhcCCC-----C---------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-
Q 010837 293 MYAKCGKIDDARRVFDHMQQK-----N---------------VFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY- 350 (499)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~~~-----~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~- 350 (499)
.+.+.|++++|.+.|.++.+. + ...+..++..|...|++++|.+++.++...- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566666666666655421 0 1135667777888888888888877765421 11111
Q ss_pred ---HHHHHHHHHHcccCcHHHHHHHHHHchHh---cCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CC
Q 010837 351 ---VTFLGALSACGHAGLVDKGREIFESMERD---YSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KP 416 (499)
Q Consensus 351 ---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~ 416 (499)
.+.+.+-..+...|+.+.|..+++..... .+..+ ...++..|...|...|++++|..++++... ++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 12233334455667788888777766531 12222 245677788888888888888888776543 11
Q ss_pred -CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC---CC---CCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 417 -NSDVWAALLSSCRLHDDVEMANIAANEIFKLNA---ND---RPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 417 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
...++..++..|...|++++|..+++++....+ .+ ....+..++..+...|++++|...+.+..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 245677788888888888888888887765321 11 12345666677778888888877766654
No 166
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=5.5e-06 Score=63.58 Aligned_cols=59 Identities=8% Similarity=-0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444455555555554444431 2233344444444444444444444444443
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=2.8e-05 Score=70.06 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=146.6
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhC-C-ChhHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN-G-NPNQALE 336 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-g-~~~~a~~ 336 (499)
...++|+++++.++..++. +..+|+.--..+...| .+++++.+++.+.. .+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4555777777777776543 3445666566666777 59999999999875 3667788777777666 6 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCcHH--------HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC------
Q 010837 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVD--------KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS------ 401 (499)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~------ 401 (499)
+++++.+.. +-|...|+.-.-++.+.|..+ ++.+.++++.+. .| |...|+.....+.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 999998864 446667665544444444444 889999998843 44 67778777777777776
Q ss_pred -HHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH--------------------HHHHHHHHHHHhcCC-----CCCC
Q 010837 402 -LEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV--------------------EMANIAANEIFKLNA-----NDRP 453 (499)
Q Consensus 402 -~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~~-----~~~~ 453 (499)
++++++.++++.. +-|...|+.+-..+.+.|.. ....+...++..... ..++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 7888888887765 45777887766666665543 333333333333320 1235
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.....++.+|...|+.++|.++++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 677889999999999999999999985
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.24 E-value=1.1e-05 Score=77.14 Aligned_cols=160 Identities=11% Similarity=0.042 Sum_probs=101.4
Q ss_pred CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH
Q 010837 298 GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 298 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
+++++|...|+...+ .....|..+...+.+.|++++|...|++..+.. |+... .. -+...
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~~-~~~~~---- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG----------LS-EKESK---- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS----------CC-HHHHH----
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc----------CC-hHHHH----
Confidence 344445544443332 134466667777777777777777777776531 11100 00 00000
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 452 (499)
+.. ......|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|++++|+..|+++++..|..
T Consensus 311 ~~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~- 384 (457)
T 1kt0_A 311 ASE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN- 384 (457)
T ss_dssp HHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Confidence 000 01135677788888888888888888888766 4567788888888888888999988888888888877
Q ss_pred CchhHHHHHHHHhcCChHHHHH-HHHHHH
Q 010837 453 PGAYVALSNTLAAAGKWDSVTE-LREKMK 480 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 480 (499)
..++..+..++.+.|+++++.+ .++.|.
T Consensus 385 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 385 KAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888887764 444443
No 169
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=1.7e-06 Score=83.24 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=89.0
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
..+.+.|++++|.+.|++..+. .| +...|..+..+|.+.|++++|++.+++..+ +.+..+|..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778888888888888733 44 577788888888888888888888887765 34677888888889999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHH--HHhcCChHHHHHHHH
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNT--LAAAGKWDSVTELRE 477 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 477 (499)
++|++.++++++..+.. ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHD-KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTC-TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999888876 6777777777 788899999988887
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=1e-05 Score=64.74 Aligned_cols=129 Identities=16% Similarity=0.000 Sum_probs=76.2
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDV 420 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~ 420 (499)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++... .++ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444555555555555555554421100011 13455566666667777777666665543 111 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNAND-----RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+..+...+...|++++|.+.+++.++..... ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666777777788888887777776542111 134567788888888888888888877654
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.00015 Score=68.71 Aligned_cols=186 Identities=12% Similarity=0.041 Sum_probs=135.3
Q ss_pred HHHHHhCCChhHHHHHHHhccCCC--------------------hHhHHHHHHHHHhCCCHHHHHHHHHhcCC-----CC
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEKN--------------------VICSTSMISGFMSQGFVEDAEEIFRKTVE-----KD 247 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~ 247 (499)
...+.+.|++++|++.|..+.+.+ ..++..+...|...|++++|.+.+.+..+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 345677889999999888874320 12467788899999999999999987752 11
Q ss_pred ---hhhHHHHHHHHhcChhhHHHHHHHHHHHHHcc----cCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC-------
Q 010837 248 ---IVVYNAMIEGYSISIETARKALEVHCQLIKNV----FFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ------- 312 (499)
Q Consensus 248 ---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 312 (499)
.......+..+....+..+.+..++....... ..+. ..++..+...|...|++++|..+++++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 12344456666667788889999888776532 2222 34677889999999999999999987652
Q ss_pred -C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHcccCcHHHHHHHHHHchH
Q 010837 313 -K-NVFTWTSMIDGYGKNGNPNQALELFCMMQEC--CV-QP-N--YVTFLGALSACGHAGLVDKGREIFESMER 378 (499)
Q Consensus 313 -~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (499)
+ ....+..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999887542 11 12 1 24566777788899999999988877763
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=9.1e-06 Score=63.82 Aligned_cols=90 Identities=13% Similarity=0.027 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-------CC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE-KPN-------------SDVWAALLSSCRLHDDVEMANIAANEIFKL-------NA 449 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~ 449 (499)
.....+.+.|++++|++.|++... .|+ ...|..+..++...|++++|+..++++++. +|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 334444555555555555555444 122 237777788888888888888888888887 77
Q ss_pred CCCCchh----HHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 450 NDRPGAY----VALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 450 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.. ...| ...+.++...|++++|+..|++..+
T Consensus 96 d~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66 7777 8888888888888888888888765
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.19 E-value=7.5e-06 Score=75.81 Aligned_cols=136 Identities=10% Similarity=0.002 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
..+..+...+.+.|++++|++.|++..+. .++.. .... .+... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 45666777777778888888877777652 01000 0000 11111 1223 4567888999
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHH
Q 010837 395 LLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 472 (499)
+|.+.|++++|++.++++.+ +.+...|..+..+|...|++++|++.|+++++..|.. ...+..+..++.+.++.+++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 3467889999999999999999999999999999886 78888899999888888877
Q ss_pred HH
Q 010837 473 TE 474 (499)
Q Consensus 473 ~~ 474 (499)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=6.3e-06 Score=66.01 Aligned_cols=130 Identities=9% Similarity=-0.006 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHcccCcHHHHHHHHHHchHhc---CCCC-ChhH
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCV-QPN----YVTFLGALSACGHAGLVDKGREIFESMERDY---SMKP-KMEH 388 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p-~~~~ 388 (499)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..... +..+ ...+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444445555555555555554433210 011 1244455555556666666666665554211 1001 1334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE----KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+..+...+...|++++|.+.+++... ..+ ..++..+...+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55666666677777777776665543 111 345666777778888888888888877654
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=1.6e-05 Score=58.92 Aligned_cols=99 Identities=3% Similarity=-0.124 Sum_probs=85.9
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CC--ChHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QR--TLSAYNY 116 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~--~~~~~~~ 116 (499)
|.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...|++.. .. +...|..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 4567778888889999999999999999999886 4577888889999999999999999998765 34 5778999
Q ss_pred HHHHHHhC-CChhhHHHHHHHHHHcC
Q 010837 117 MIAGYLKN-GQVEESLSLVRKLVSSG 141 (499)
Q Consensus 117 li~~~~~~-g~~~~a~~~~~~m~~~g 141 (499)
+...+.+. |++++|++.+++....+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999999 99999999999998763
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.15 E-value=0.00029 Score=63.19 Aligned_cols=181 Identities=11% Similarity=0.043 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC--ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCC-hhHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGN-PNQALELF 338 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~-~~~a~~~~ 338 (499)
.++++.+++.+....++ +..+|+.-.-++.+.| .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 45666666666665432 4455555555555666 36777777777764 355666666666666676 47777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHccc--------------CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc----
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHA--------------GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA---- 399 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 399 (499)
+++.+.. +-|...|+.....+.+. +.++++.+.+..... ..| |...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 7777754 33555555443333222 346666666666662 244 455554433333333
Q ss_pred -------CCHHHHHHHHHhCCC-CCCHHHHHHHHH-----HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 400 -------GSLEQALKFVLEMPE-KPNSDVWAALLS-----SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 400 -------~~~~~a~~~~~~~~~-~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+.++++++.++++.+ .|+. .|..+.. +....|..+++...+.++++.+|.-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 234455555555444 2332 1221111 1112344555555555555555544
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=1.1e-05 Score=61.82 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=59.5
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCC-Ch---hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHH
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKP-KM---EHYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALL 425 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~ 425 (499)
.+...+...|++++|...|+.+.+. .| +. ..+..+..++.+.|++++|...|+++.. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3445566677777777777777633 23 22 3556666667777777777777766654 232 45566666
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.++...|++++|...++++++..|..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 67777777777777777777666544
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=5.1e-06 Score=63.15 Aligned_cols=91 Identities=12% Similarity=0.008 Sum_probs=46.6
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
...+.+.|++++|...|+...+. .| +...|..+..++...|++++|+..|++... +.+...+..+..++...|+
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33444555555555555555522 23 444555555555555555555555555544 2234455555555555566
Q ss_pred HHHHHHHHHHHHhcCCC
Q 010837 434 VEMANIAANEIFKLNAN 450 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~ 450 (499)
+++|+..++++++..|.
T Consensus 101 ~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhCcC
Confidence 66666666655554443
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.15 E-value=3.2e-06 Score=77.43 Aligned_cols=148 Identities=8% Similarity=-0.061 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
...+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 456777788888899999999999988774 454431 233344444433221 135777788
Q ss_pred HHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-HhcCChHH
Q 010837 395 LLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL-AAAGKWDS 471 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 471 (499)
+|.+.|++++|+..+++... +.+...|..+..+|...|++++|+..|+++++..|.. ..++..+..+. ...+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887765 3467788888888888888888888888888877766 66676666663 34556677
Q ss_pred HHHHHHHHHhCC
Q 010837 472 VTELREKMKLRG 483 (499)
Q Consensus 472 A~~~~~~~~~~~ 483 (499)
+.+.+++|....
T Consensus 318 a~~~~~~~l~~~ 329 (338)
T 2if4_A 318 QKEMYKGIFKGK 329 (338)
T ss_dssp ------------
T ss_pred HHHHHHHhhCCC
Confidence 777777776543
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=7.9e-06 Score=62.69 Aligned_cols=109 Identities=8% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C---CC----HHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--K---PN----SDVW 421 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~---~~----~~~~ 421 (499)
..+..+...+...|++++|...++...... +.+...+..+...|...|++++|...++++.. + ++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 456667777778888888888888877331 23566777777888888888888888877665 1 12 5677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
..+..++...|++++|.+.++++.+..+. ......+..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 77777788888888888888888777653 34444444443
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=7.6e-06 Score=62.78 Aligned_cols=109 Identities=15% Similarity=0.074 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC-CCC----hhHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM-KPK----MEHYA 390 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p~----~~~~~ 390 (499)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++.+.....- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455666667777777777777777776653 345566666677777777777777777776632110 111 55666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
.+..+|...|++++|.+.|+++.. .|+......+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 677777777777777777776655 34544444433
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=2.6e-05 Score=59.73 Aligned_cols=90 Identities=12% Similarity=-0.002 Sum_probs=43.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-C---hhHHHHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-K---MEHYACMV 393 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~---~~~~~~l~ 393 (499)
+...+...|++++|...|++..+.. +.+. ..+..+..++...|++++|...|+.+... .| + ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence 3444455555555555555555432 1111 24444445555555555555555555522 12 1 33444455
Q ss_pred HHHHhcCCHHHHHHHHHhCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.++...|++++|...|+++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.00033 Score=62.85 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=129.6
Q ss_pred hHHHHHHHHhcCC---CChhHHHHHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc-HHHHHHHH
Q 010837 300 IDDARRVFDHMQQ---KNVFTWTSMIDGYGKNG--NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL-VDKGREIF 373 (499)
Q Consensus 300 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 373 (499)
+++++.+++.+.. .+..+|+.-...+.+.| .+++++.+++++.+.. +-|...|+.-.-++...|. ++++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677778877764 47778888777777777 4899999999999874 4577777766666666777 68999999
Q ss_pred HHchHhcCCCC-ChhHHHHHHHHHHhc--------------CCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc-----
Q 010837 374 ESMERDYSMKP-KMEHYACMVDLLGRA--------------GSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH----- 431 (499)
Q Consensus 374 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~----- 431 (499)
+.+.+. .| |...|+.....+.+. +.++++++.+.+... +.|...|+-+-..+.+.
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 999843 44 666676665555544 457889998888775 55777787555555444
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH---HhcCChHHHHHHHHHHHhC
Q 010837 432 ------DDVEMANIAANEIFKLNANDRPGAYVALSNTL---AAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 432 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 482 (499)
+.++++++.++++++..|+. ...+..++... ...|..+++...++++++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45889999999999999976 44444443322 2467788899999998874
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=4e-06 Score=63.30 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=46.9
Q ss_pred cCcHHHHHHHHHHchHhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 363 AGLVDKGREIFESMERDYSM-KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
.|++++|+..|++..+ .+. .| +...+..+..+|...|++++|++.|+++.+ +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555555666655551 110 13 344555566666666666666666665554 234555566666666666666666
Q ss_pred HHHHHHHhcCCCC
Q 010837 439 IAANEIFKLNAND 451 (499)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (499)
..++++++..+..
T Consensus 82 ~~~~~al~~~p~~ 94 (117)
T 3k9i_A 82 ELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHhCCCc
Confidence 6666666655544
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.06 E-value=1.2e-05 Score=73.45 Aligned_cols=150 Identities=9% Similarity=-0.037 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
...+..+...+.+.|++++|...|++..+.+.... .+...|+.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34566788888999999999999998764222111 1222333333332221 13677778888888
Q ss_pred CcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHH-HhhcCCHHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSS-CRLHDDVEMANI 439 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~-~~~~~~~~~a~~ 439 (499)
|++++|...++...+. .| +...|..+..+|...|++++|+..|+++.. .| +...+..+... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888832 45 677888888889999999999999988876 34 34455555444 234566777888
Q ss_pred HHHHHHhcCCCC
Q 010837 440 AANEIFKLNAND 451 (499)
Q Consensus 440 ~~~~~~~~~~~~ 451 (499)
.|+.+.+..|..
T Consensus 321 ~~~~~l~~~p~~ 332 (338)
T 2if4_A 321 MYKGIFKGKDEG 332 (338)
T ss_dssp ------------
T ss_pred HHHHhhCCCCCC
Confidence 888888776654
No 186
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=8.6e-06 Score=65.57 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+...|..+..+|.+.|++++|+..++++.. +.+...|..+..++...|++++|...|+++++..|..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 345677778888888888888888887765 4467788888888888888888888888888887765
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.03 E-value=2.2e-05 Score=63.18 Aligned_cols=94 Identities=15% Similarity=0.059 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------------------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--------------------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+......+.+.|++++|+..|++... +.+...|..+..+|.+.|++++|+..++++++.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44444455555555555555544432 1234678889999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
|.. ...|..++.+|...|++++|...+++..+..
T Consensus 94 p~~-~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETN-EKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Ccc-hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 987 8999999999999999999999999988753
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.01 E-value=6.2e-06 Score=62.22 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHhCCCC----C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHH
Q 010837 398 RAGSLEQALKFVLEMPEK----P-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 472 (499)
..|++++|+..|++..+. | +...+..+..++...|++++|+..++++++..|.. +.++..++.+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHcCCHHHH
Confidence 468889999999988763 3 34678889999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHHHhC
Q 010837 473 TELREKMKLR 482 (499)
Q Consensus 473 ~~~~~~~~~~ 482 (499)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=7.6e-05 Score=71.71 Aligned_cols=116 Identities=12% Similarity=0.072 Sum_probs=83.0
Q ss_pred HHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3446677888888888887754 356778888888888888888888888888753 345677888888888888888
Q ss_pred HHHHHHHHchHhcCCCC-ChhHHHHHHHH--HHhcCCHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKP-KMEHYACMVDL--LGRAGSLEQALKFVL 410 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 410 (499)
+|.+.|+++.+. .| +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888743 33 34445555555 777888888888888
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.87 E-value=7.3e-05 Score=71.47 Aligned_cols=127 Identities=13% Similarity=0.027 Sum_probs=94.3
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-C---------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-N---------------VFTWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
...+..+...|.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45677888999999999999999998864 3 2 4677778888888888888888888887753
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHH-HHHhCCC
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALK-FVLEMPE 414 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~ 414 (499)
+.+...|..+..+|...|++++|...|+++. .+.| +...+..+..++.+.++.+++.+ .++.|..
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777778888888888888888888887 4455 55677777777777777776653 4555554
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=8.3e-05 Score=68.76 Aligned_cols=117 Identities=8% Similarity=-0.042 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC----------------C---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ----------------K---NVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
..+..+...+.+.|++++|...|++..+ . +...|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577788899999999999999988764 1 22344555555555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 405 (499)
+.+...+..+..+|...|++++|...|+++.+. .| +...+..+..++...++.+++
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223444555555555555555555555555421 23 334444444444444444444
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=0.00011 Score=53.31 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+...+..+...+...|++++|+..|+++++.+|.. ..+|..++.+|.+.|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDY-VGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555554 4555555555555555555555555544
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=4.7e-05 Score=72.75 Aligned_cols=124 Identities=8% Similarity=0.021 Sum_probs=85.0
Q ss_pred HHcccCcHHHHHHHHHHchHhcC--C---CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHH
Q 010837 359 ACGHAGLVDKGREIFESMERDYS--M---KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE---------KPN-SDVWA 422 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~--~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~~~ 422 (499)
.+..+|++++|+.++++..+... + .| ...+++.|..+|...|++++|..++++..+ .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34566777777777766653211 1 12 245677788888888888888887776554 133 34677
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHh-----cCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFK-----LNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.|...|...|++++|+.+++++++ .|++. ...+...+..++...|++++|+.++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887765 45543 1334556777788888888888888888764
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=8.8e-05 Score=52.53 Aligned_cols=81 Identities=19% Similarity=0.264 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
...+..+...+...|++++|+..|++... +.+...+..+...+...|++++|...++++.+..|.. ...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 44566667777777777777777776654 3456677777777778888888888888887777765 66677777666
Q ss_pred HhcC
Q 010837 464 AAAG 467 (499)
Q Consensus 464 ~~~g 467 (499)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.82 E-value=0.00064 Score=66.57 Aligned_cols=168 Identities=10% Similarity=0.017 Sum_probs=127.6
Q ss_pred ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCC----------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC-
Q 010837 299 KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGN----------PNQALELFCMMQECCVQPNYVTFLGALSACGHAG- 364 (499)
Q Consensus 299 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~- 364 (499)
..++|.+.++++.+ .+..+|+.--.++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34567788877764 245567666666666666 888999999988763 446667777667777778
Q ss_pred -cHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcC-CHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc--------
Q 010837 365 -LVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAG-SLEQALKFVLEMPE--KPNSDVWAALLSSCRLH-------- 431 (499)
Q Consensus 365 -~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~-------- 431 (499)
+++++.+.++++.+. .| +...|+.-..++.+.| .++++++.++++.+ .-|...|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999843 45 6677777777777788 88999999998887 35677887777666542
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 432 ------DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 432 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
+.++++++.+++++...|.. ..+|..+...+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~-~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPND-QSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSC-SHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHhcCCCccc
Confidence 56799999999999999998 8999999999988887554
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.77 E-value=0.00027 Score=54.84 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh--
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA-- 465 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 465 (499)
|...|...+.+++|+++|++..+..+...+..|...|.. .+|+++|.+.|++..+.+. +..+..|...|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGK 107 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCC
Confidence 444444444444455555544444444445555544444 4555555555555554432 3455555555555
Q ss_pred --cCChHHHHHHHHHHHhCC
Q 010837 466 --AGKWDSVTELREKMKLRG 483 (499)
Q Consensus 466 --~g~~~~A~~~~~~~~~~~ 483 (499)
.+++++|.+.+++..+.|
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHHCC
Confidence 455555555555555544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00013 Score=54.59 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=58.4
Q ss_pred HHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
.|...|++.. ...| +...+..+...|...|++++|+..|++... +.+...|..+..++...|++++|...|+++
T Consensus 3 ~a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677666 3344 566777788888888888888888877765 345667777888888888888888888887
Q ss_pred HhcCCC
Q 010837 445 FKLNAN 450 (499)
Q Consensus 445 ~~~~~~ 450 (499)
++..+.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 776543
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=6.4e-05 Score=71.83 Aligned_cols=123 Identities=10% Similarity=-0.124 Sum_probs=74.8
Q ss_pred HHhCCChhHHHHHHHhccC-------C----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhh
Q 010837 196 YVKGGKTSYARIVFDMMLE-------K----NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264 (499)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 264 (499)
+...|++++|+.++++..+ + ...+++.+...|..+|++++|..++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~---------------------- 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR---------------------- 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------
Confidence 4567888888887776632 1 134677888888888888888887763
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-------CC----hhHHHHHHHHHHhCCChhH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------KN----VFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~g~~~~ 333 (499)
++++++...-..-+-...+++.|...|...|++++|+.++++..+ ++ ..+.+.+..++...+.+++
T Consensus 377 ---aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 377 ---MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp ---HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 233333222222212234677788888888888888888776542 11 1233444455555555666
Q ss_pred HHHHHHHHHH
Q 010837 334 ALELFCMMQE 343 (499)
Q Consensus 334 a~~~~~~m~~ 343 (499)
|+.+|.++++
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.74 E-value=8e-05 Score=58.47 Aligned_cols=69 Identities=12% Similarity=0.070 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHH----HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--------KP-NSDVW----AALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
.|..+..++.+.|++++|+..+++..+ .| +...| .....++...|++++|+..|+++++..|.. ..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d-~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER-KG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HH
Confidence 566666666667776666666555442 34 34577 888889999999999999999999887766 44
Q ss_pred hhH
Q 010837 455 AYV 457 (499)
Q Consensus 455 ~~~ 457 (499)
.+.
T Consensus 138 ~~~ 140 (159)
T 2hr2_A 138 ETP 140 (159)
T ss_dssp CCT
T ss_pred HHH
Confidence 433
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.67 E-value=0.00099 Score=51.60 Aligned_cols=112 Identities=9% Similarity=-0.061 Sum_probs=92.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----cCCHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----AGSLEQ 404 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 404 (499)
+++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 667777878888999999998832 355677788888887 789999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCC
Q 010837 405 ALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~ 449 (499)
|+++|++..+..+...+..|...|.. .+|.++|.+.+++..+.|.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998877788888889988888 8999999999999988764
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=6.5e-05 Score=55.62 Aligned_cols=92 Identities=10% Similarity=-0.024 Sum_probs=61.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-----CchhH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-----PGAYV 457 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~ 457 (499)
+...+..+...+...|++++|++.|++... +.+...+..+..++...|++++|++.++++++..|... ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 345566677777777888888877777665 34567777777788888888888888888877766541 23455
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 010837 458 ALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~ 476 (499)
.+..++...|++++|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 5555666666555554433
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=6e-05 Score=55.79 Aligned_cols=94 Identities=13% Similarity=0.003 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-------hh
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-------ME 387 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-------~~ 387 (499)
...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++.. .+.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHHHH
Confidence 3455566666777777777777777766642 3355666666777777777777777777766 33453 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
.+..+..++...|+.+.|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4444555555555555444444433
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00018 Score=53.75 Aligned_cols=78 Identities=10% Similarity=-0.075 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+|+..|++..+.. +.+...+..+..++...|++++|...|++..+. .| +...|..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4666677766642 345566677777777777777777777777632 33 455667777777777777777777776
Q ss_pred CCC
Q 010837 412 MPE 414 (499)
Q Consensus 412 ~~~ 414 (499)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=6.3e-05 Score=58.94 Aligned_cols=85 Identities=12% Similarity=0.025 Sum_probs=63.2
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC----------HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 398 RAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD----------VEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
+.+.+++|++.+++..+ +.+...|..+..++...++ +++|+..|+++++.+|.. ..+|..++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHH
Confidence 34455566666655554 3355556555555555544 569999999999999998 8999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhCC
Q 010837 466 AG-----------KWDSVTELREKMKLRG 483 (499)
Q Consensus 466 ~g-----------~~~~A~~~~~~~~~~~ 483 (499)
.| ++++|.+.|++..+.+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 75 8999999999988743
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.46 E-value=0.0015 Score=64.00 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=122.4
Q ss_pred CCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCc----------HHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 328 NGNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGL----------VDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
....++|++.++++.+. .|+ ...|+.--.++...|+ ++++.+.++.+.+. .| +..+|..-.-+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34456789999999885 454 4456554444444555 89999999999943 45 67778777777
Q ss_pred HHhcC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc----
Q 010837 396 LGRAG--SLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD-DVEMANIAANEIFKLNANDRPGAYVALSNTLAAA---- 466 (499)
Q Consensus 396 ~~~~~--~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 466 (499)
+.+.+ +++++++.++++.+ .-+..+|+.-...+.+.| .++++++.++++++.+|.. ..+|+....++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHHSCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHhhcccc
Confidence 88888 77999999999987 467889998888888888 8999999999999999998 89999988888774
Q ss_pred ----------CChHHHHHHHHHHHhCCCccCccccc
Q 010837 467 ----------GKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 467 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
+.++++.+.+++.... .|+....|
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW 229 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAW 229 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHhh--CCCCccHH
Confidence 5678999999888774 45544444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.27 E-value=0.00024 Score=55.67 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=32.0
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHhhc-----------CCHHHHHHHHHHHHhcCCCC
Q 010837 403 EQALKFVLEMPE--KPNSDVWAALLSSCRLH-----------DDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 403 ~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 451 (499)
++|+..|++..+ +.+..+|..+..+|... |++++|++.|+++++.+|..
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 455555555554 23445555666666544 47888888888888888765
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.0012 Score=46.50 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+..+...+...|++++|+..++++++..+.. ..++..++.+|.+.|++++|.+.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34678888889999999999999999999998877 8899999999999999999999999988753
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.20 E-value=0.0025 Score=45.23 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 416 PNSDVWAALLSSCRLHDD---VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+...+..+..++...++ .++|..+++++++.+|.. +.....++..+.+.|++++|...|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344555555555543333 466666666666666666 666666666666666666666666666654433
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.00043 Score=49.88 Aligned_cols=64 Identities=20% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 456 (499)
....+.+.|++++|++.|+++.+ +.+.. .+..+..++...|++++|.+.|+++++.+|.. ...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-PALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-THHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHHH
Confidence 44566777888888888887765 33556 77778888888888888888888888887776 4444
No 210
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.13 E-value=0.17 Score=49.68 Aligned_cols=233 Identities=8% Similarity=-0.055 Sum_probs=120.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhh-
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIET- 264 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~- 264 (499)
-+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|....+.+- ......+..++..+.+.+..
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCC
Confidence 34455667778888888887766 33455555566777788888777766555543 22334455555555432111
Q ss_pred HHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC---------------------------CCChh-
Q 010837 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ---------------------------QKNVF- 316 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------------------------~~~~~- 316 (499)
.+....-++. ....|+...|..+...+. .++..
T Consensus 154 ~~~~~~R~~~-------------------al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~ 214 (618)
T 1qsa_A 154 PLAYLERIRL-------------------AMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFT 214 (618)
T ss_dssp HHHHHHHHHH-------------------HHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHH-------------------HHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhh
Confidence 1112222222 222233333333322221 11111
Q ss_pred --HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHH
Q 010837 317 --TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT----FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390 (499)
Q Consensus 317 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 390 (499)
.+..-+.-+.+ .+.+.|...|....+.. ..+... ...+.......+...++...+...... ..+.....
T Consensus 215 ~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e 289 (618)
T 1qsa_A 215 RQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHH
T ss_pred HHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHH
Confidence 11111222223 36778888887775543 223222 223333344445345555555554421 23333333
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPEKP--NSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
-.+....+.|+++.|...|+.|...+ .....--+.+++...|+.++|..+|+.+.+
T Consensus 290 ~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 290 RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34444456788888888888887632 334445566677778888888888888764
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.13 E-value=0.0017 Score=46.96 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.+..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444444331 1123334444444444444444444444433
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.94 E-value=0.00071 Score=63.50 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=42.0
Q ss_pred ccCcHHHHHHHHHHchHhc--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDY--SMKP----KMEHYACMVDLLGRAGSLEQALKFVLEMPE---------KPN-SDVWAALL 425 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~~~~l~ 425 (499)
..|++++|+.++++..... -+.| ...+++.|..+|...|++++|+.++++... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4455666666655544221 1111 133455555555555666555555554433 122 13455555
Q ss_pred HHHhhcCCHHHHHHHHHHHHh
Q 010837 426 SSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555555555555555555554
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0012 Score=62.04 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=59.6
Q ss_pred HHHHcccCcHHHHHHHHHHchHhc--CCCC----ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCC-HHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDY--SMKP----KMEHYACMVDLLGRAGSLEQALKFVLEMPE---------KPN-SDV 420 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-~~~ 420 (499)
+..+.+.|++++|..++++..... -+.| ...+++.|+.+|...|++++|+.+++++.. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556778888888777766321 1122 244677777777778888887777776554 122 246
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
++.|...|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777777777788888777777777
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.88 E-value=0.047 Score=49.23 Aligned_cols=67 Identities=10% Similarity=-0.066 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+..+|..+...+...|++++|...++++.. .|+...|..+...+.-.|++++|.+.++++...+|.+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 556666666666666777777777776665 5666666666666777777777777777777776655
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.85 E-value=0.048 Score=56.21 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=71.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
......|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3456779999999988766 3567899999999999999999999998754 3344445555677766665
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
+-+... ..|. ++.-..+|.+.|++++|++++.++.
T Consensus 729 ~~~~a~-~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAE-TTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHH-HTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHH-HcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555544 2121 3444455666777777777776655
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.85 E-value=0.0024 Score=45.84 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=53.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc-hhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPG-AYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
....+...|++++|++.++++++..+.. .. .+..++.+|...|++++|.+.+++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4566788999999999999999999887 77 99999999999999999999999998754
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.0059 Score=55.05 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
+.+..+|..+...+...|++++|...+++++..+ |+...|..++..+.-.|++++|.+.+++....+..+. .+.|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 5678888888888888899999999999999998 4456778889999999999999999999887654443 34443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.69 E-value=0.0045 Score=58.09 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFK-----LNAND--RPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
+++.|..+|...|++++|+.+++++++ .|+.. ...+++.|+..|..+|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 444444555555555555555444443 12211 1223444555555555555555444443
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.19 Score=39.93 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=87.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999999888776 5677899999999999999999999988654 3444445556677776665
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
+-+....+ | -++.-...+.-.|+++++.++|.+...-|... ......|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 55544422 2 14555666777899999999998776522111 1122356677777776655
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.57 E-value=6.7e-05 Score=68.96 Aligned_cols=236 Identities=12% Similarity=0.079 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccc
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 158 (499)
.+.+|..|..+..+.+++.+|+..|-+ ..|+..|..+|.+..+.|++++-++.+...++..-.| ..=+.++-+|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay-- 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL-- 126 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH--
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH--
Confidence 445677788888888888877765543 4566677788888888888888888887776653333 3334566666
Q ss_pred cccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC------------------------
Q 010837 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE------------------------ 214 (499)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------ 214 (499)
++.++....+++.. .||..-...+.+-|...|.++.|.-+|..+..
T Consensus 127 ---Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 127 ---AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp ---HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred ---HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444433333221 36666666677777777888777777766521
Q ss_pred CChHhHHHHHHHHHhCCCHHHHHHHHHhcC-CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHH
Q 010837 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTV-EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293 (499)
Q Consensus 215 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (499)
.++.+|-.+-.+|...+++.-|.-.--.++ .+|.- ..++..| ...|.+++-+.+++.-... -.....+|+-|.-.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL--~elv~~Y-E~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL--EELINYY-QDRGYFEELITMLEAALGL-ERAHMGMFTELAIL 272 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC--SGGGSSS-STTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH--HHHHHHH-HhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence 266789888889888888877754432222 22210 0111111 2225555555555444321 11234455555555
Q ss_pred HHhcCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCCChhHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNGNPNQAL 335 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~ 335 (499)
|+|- +.++..+.++.... .....|..++-.|.+..++|.|.
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5544 33444433332221 24456666666676666666554
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.50 E-value=0.0061 Score=57.26 Aligned_cols=94 Identities=10% Similarity=0.005 Sum_probs=57.6
Q ss_pred HHHHHhCCChhHHHHHHHhccCC--------C---hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK--------N---VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+.-+.+.|++++|+.++++..+. + ..+++.+...|...|++++|+.++++.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~------------------ 355 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT------------------ 355 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH------------------
Confidence 34455677888888777766431 1 346777777777788888877776633
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
+.+++...-...+....+++.|...|...|++++|..++++..
T Consensus 356 -------L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 356 -------MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -------HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2222222211111123466777777888888888887777654
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.48 E-value=0.16 Score=40.24 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
+.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+..+-+...+...+ . |+.++...+-+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~---t---g~~e~L~kla~ 84 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLV---T---GDVNKLSKMQN 84 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH---H---TCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHH---h---CCHHHHHHHHH
Confidence 4467899999999998877 46789999999999999999999999987643332222222 1 44444443333
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 312 (499)
.....|- ++.....+.-.|+++++.++|.+..+
T Consensus 85 iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 85 IAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 3333332 34445556667788887777766544
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.056 Score=55.68 Aligned_cols=46 Identities=15% Similarity=0.009 Sum_probs=22.3
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
...|++++|.++.+. -.+...|..+...+.+.++++.|++.|..+.
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 334555555554322 1234455555555555555555555555443
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.38 E-value=0.093 Score=39.07 Aligned_cols=140 Identities=11% Similarity=0.078 Sum_probs=90.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
.-.|..++..++..+.... .+..-|+-++.-....-+-+-..++++.+-.-+.+. .+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777777777777653 344555555554445555666666666655333322 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
..-+-.+- .+.......+......|.-+.-.+++..+.... .+++.....+..+|.+.|+..+|.+++.+..+.|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33333332 244556666778888888888888888865533 333688888999999999999999999999888875
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.36 E-value=0.023 Score=40.09 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=49.6
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 384 PKMEHYACMVDLLGRAGS---LEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 384 p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.+...+..+..++...++ .++|..++++... +.+......+...+.+.|++++|+..|+++.+..+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 356667777777654444 6788888887776 455677777778888888888888888888887766
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.09 E-value=0.027 Score=48.67 Aligned_cols=82 Identities=11% Similarity=0.160 Sum_probs=54.6
Q ss_pred HHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHhCCC-CC--CHHHHHHHHHHHhhc-CC
Q 010837 366 VDKGREIFESMERDYSMKPK---MEHYACMVDLLGRA-----GSLEQALKFVLEMPE-KP--NSDVWAALLSSCRLH-DD 433 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~--~~~~~~~l~~~~~~~-~~ 433 (499)
...|...+++.. .+.|+ ...|..|...|... |+.++|.+.|++... .| +..++......++.. |+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 455666666665 34554 45677777777763 777777777777766 44 356666666766663 77
Q ss_pred HHHHHHHHHHHHhcCCC
Q 010837 434 VEMANIAANEIFKLNAN 450 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~ 450 (499)
.+++.+.+++.+...+.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777777666
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.99 E-value=0.062 Score=49.89 Aligned_cols=199 Identities=11% Similarity=0.007 Sum_probs=112.8
Q ss_pred CCCCcccccccCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC
Q 010837 29 FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ 108 (499)
Q Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 108 (499)
.+..++.+- ...|+..|..++.++.+.|.+++-...+....+..-.| .+=+.|+-+|++.+++.+.++++..
T Consensus 70 v~eAIdsyI---kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl~~--- 141 (624)
T 3lvg_A 70 VKEAIDSYI---KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFING--- 141 (624)
T ss_dssp CTTTTTSSC---CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTTSC---
T ss_pred hHHHHHHHH---hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHHcC---
Confidence 444444443 45677889999999999999999999998877664334 4445788899998887765544332
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcC--------------------CCCChhhHHHHhhhcccccc-------
Q 010837 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--------------------ERPDGYTFSMILKASTCCRS------- 161 (499)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~~~------- 161 (499)
||+.--..+.+-|...|.++.|.-+|..+.... -.-+..||..+-.+|...+.
T Consensus 142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 222222333333333333333333332211100 01233344444444411110
Q ss_pred ------------------CCcCcchhHHHHHHHHHHcCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-------
Q 010837 162 ------------------NVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------- 215 (499)
Q Consensus 162 ------------------~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 215 (499)
...|-+++...+++.-. |+ ......|+.|.-.|++- +.++..+-++....+
T Consensus 222 GLniIvhadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 222 GLHIVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred cchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 45555555555555433 22 24556788888777775 455555555544332
Q ss_pred ----ChHhHHHHHHHHHhCCCHHHHHH
Q 010837 216 ----NVICSTSMISGFMSQGFVEDAEE 238 (499)
Q Consensus 216 ----~~~~~~~l~~~~~~~g~~~~a~~ 238 (499)
....|..++-.|.+-.+++.|..
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 34578888888888888876644
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.012 Score=45.48 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=66.7
Q ss_pred cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC---CHHHHHHHHHhCCC-C-C--CHHHHHHHHHHHhhcCCHH
Q 010837 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG---SLEQALKFVLEMPE-K-P--NSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~ 435 (499)
...+..+.+.|.+.... + .++..+...+.-++++.+ +.++++.+|++..+ . | +...+-.|.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34566777777777632 3 367777788888888888 66789998888776 2 4 3456667777889999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 010837 436 MANIAANEIFKLNAND 451 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~ 451 (499)
+|.+.++.+++..|..
T Consensus 89 ~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999999876
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.89 E-value=0.037 Score=40.03 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC---------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE---------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.-+..|...+.+.|+++.|..+|+.+.. .+....+..|..++.+.|+++.|...++++.+..|..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3445566666666666666666655443 1234567777777777777777777777777777665
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.85 E-value=0.039 Score=47.70 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=73.7
Q ss_pred cCChHHHHHHHHhcCCCCh--hHHHHHHHH-HHhC--CC------hhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHcc
Q 010837 297 CGKIDDARRVFDHMQQKNV--FTWTSMIDG-YGKN--GN------PNQALELFCMMQECCVQPN---YVTFLGALSACGH 362 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~~~~--~~~~~l~~~-~~~~--g~------~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~ 362 (499)
.++..+....+.++...++ ..|..++.+ +... |+ ...|...+++..+ +.|+ ...|..+...|.+
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444555555666654444 345555543 2332 32 4566677777776 4565 4567777777777
Q ss_pred c-----CcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhc-CCHHHHHHHHHhCCC
Q 010837 363 A-----GLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRA-GSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ~-----~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 414 (499)
. |+.++|.+.|++.. .+.| +..++....+.+++. |+.+++.+.+++...
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3 88888888888888 3456 366777777878774 888888888888765
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.80 E-value=0.044 Score=39.60 Aligned_cols=66 Identities=14% Similarity=0.050 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC------CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNA------NDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
+..-+..+...+...|+++.|...++.+.+... .....++..++.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 445566788999999999999999999987421 123678999999999999999999999998763
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.35 E-value=0.062 Score=41.50 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC---cHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAG---LVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQ 404 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~ 404 (499)
....+.+-|.+..+.|. ++..+...+..++++++ ++++++.+++...+. . .| +...+-.|.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHH
Confidence 34566677777666653 67777777777788877 667899999988854 2 24 35556667777889999999
Q ss_pred HHHHHHhCCC-CCC
Q 010837 405 ALKFVLEMPE-KPN 417 (499)
Q Consensus 405 a~~~~~~~~~-~~~ 417 (499)
|++.++.+.+ +|+
T Consensus 90 A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 9999988877 553
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.30 E-value=0.063 Score=40.91 Aligned_cols=112 Identities=10% Similarity=0.006 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHcccCcH------HHHHHHHHHchHhcCCCCChh-HHHHHHHH------HHhcCCHHHHHHHHHhCC
Q 010837 347 QPNYVTFLGALSACGHAGLV------DKGREIFESMERDYSMKPKME-HYACMVDL------LGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~------~~~~~~~~~a~~~~~~~~ 413 (499)
+-|..+|-..+....+.|+. ++..++|++... .++|+.. .|...|.. +...++.++|.++|+.+.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34666777777777777887 788888888774 4555321 12222211 123467777777777664
Q ss_pred C--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 010837 414 E--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461 (499)
Q Consensus 414 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 461 (499)
+ +.-...|.....--.+.|+.+.|.+++.+.+..++.| .......++
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 3 2235566666666677788888888888888877777 444444433
No 234
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.03 E-value=1.8 Score=38.44 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHH----HHHHHcCCCCChhhHHHHhhhc
Q 010837 81 NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV----RKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
.+|..+..-|.+.+++++|++++-. -...+.+.|+...+.++- +.+.+.++++|.....-++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677778888999999887643 334466677776655544 5566678899988887777776
Q ss_pred cccccCCcCcchhHHHHHHHHHHcC--CCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCC
Q 010837 157 TCCRSNVPLPRNLGRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232 (499)
Q Consensus 157 ~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (499)
...............+...+-.+.| -.-|+.....+...|.+.+++.+|..-|=.-..++...+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 3332222222233334444445544 234667778888889999999999888743222233566555555555444
No 235
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.99 E-value=3 Score=40.90 Aligned_cols=378 Identities=10% Similarity=-0.011 Sum_probs=188.2
Q ss_pred HHHHHHHHh-CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC
Q 010837 66 KIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144 (499)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (499)
++-.-+.+. |.+.....-+..+..+.+.+++......+.. ...+...-.....+....|+..+|....+.+-..| ..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CC
Confidence 344444443 2223335556677888889999999998887 44455555567777888899888888777776655 22
Q ss_pred ChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc-----------
Q 010837 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML----------- 213 (499)
Q Consensus 145 ~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------- 213 (499)
....+..++..+ .+.|.-.+..++. -+......|+...|..+...+.
T Consensus 135 ~p~~c~~l~~~~---------------------~~~g~lt~~~~~~-R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~ 192 (618)
T 1qsa_A 135 QPNACDKLFSVW---------------------RASGKQDPLAYLE-RIRLAMKAGNTGLVTVLAGQMPADYQTIASAII 192 (618)
T ss_dssp CCTHHHHHHHHH---------------------HHTTCSCHHHHHH-HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred CcHHHHHHHHHH---------------------HHCCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334445555544 2222111111111 1122233333333333333321
Q ss_pred ----------------CCCh---HhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHH----HHhcChhhHHH
Q 010837 214 ----------------EKNV---ICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIE----GYSISIETARK 267 (499)
Q Consensus 214 ----------------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~----~~~~~~~~~~~ 267 (499)
.++. ..+..-+.-+.+ .+.+.|...+.... ..+......+-. ..... +...+
T Consensus 193 al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~-~~~~~ 270 (618)
T 1qsa_A 193 SLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGN-DVTDE 270 (618)
T ss_dssp HHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCST-TCCHH
T ss_pred HHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHc-CCChH
Confidence 1111 111111222333 36677777776653 112222222211 22222 31225
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+...+....... .+.....-.+....+.|+++.|...|+.|... .....--+..++...|+.++|..+|..+...
T Consensus 271 ~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 271 QAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 555555543322 22222333444455678888888888888653 2223334556677788888888888887642
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---h---hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---M---EHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 418 (499)
.+ |-.++.+ .+.|..-. .. .....+. . ..-..-+..+...|....|...+..+....+.
T Consensus 349 ---~~---fYg~lAa-~~Lg~~~~-------~~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~ 413 (618)
T 1qsa_A 349 ---RG---FYPMVAA-QRIGEEYE-------LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSK 413 (618)
T ss_dssp ---CS---HHHHHHH-HHTTCCCC-------CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred ---CC---hHHHHHH-HHcCCCCC-------CC-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCH
Confidence 22 2222211 12221000 00 0000110 0 01112344567788888888888777655555
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC---CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNA---NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.....+.......|..+.++.........+. .. +..|...+..+.+.-.++..+-.---..+.+..|.
T Consensus 414 ~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~-P~~y~~~i~~~a~~~gv~~~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 414 TEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERF-PLAYNDLFKRYTSGKEIPQSYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHS-CCTTHHHHHHHHTTSSSCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhC-CcchHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCC
Confidence 5455555556677888777655443222110 11 23466666666665555554433223345555554
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.98 E-value=0.073 Score=40.59 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
+|.++|.++|+.+++.+... ...|...++.-.+.|+.+.|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555555543333 444555555555555555555555555544433
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.50 E-value=2.4 Score=37.57 Aligned_cols=178 Identities=12% Similarity=0.079 Sum_probs=105.7
Q ss_pred HHHcCCCh---hHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcC
Q 010837 89 LHLKCGAL---KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165 (499)
Q Consensus 89 ~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 165 (499)
.-...|++ =+|.+. |.++..-|.+.+++++|++++-.--.. +++.= ...-
T Consensus 21 ~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~GA~~-----------ll~~~-----Q~~s 73 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASVSQT-----------LLRSG-----QGGS 73 (336)
T ss_dssp HHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHTT-----CHHH
T ss_pred HHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHHHHH-----------HHHCC-----Ccch
Confidence 34456777 667664 455777799999999999987653211 11110 1111
Q ss_pred cchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh-HHHHHHHhc----------cCCChHhHHHHHHHHHhCCCHH
Q 010837 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS-YARIVFDMM----------LEKNVICSTSMISGFMSQGFVE 234 (499)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~ 234 (499)
-.+.+..+.+...+.++++|......|+..+.....-+ .=.++.+++ ..-+......+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 13455566677778889999888888888877665422 112222222 1226677788889999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
+|..-|-...++....|..++..+....+.. .++...-.++ --|...+++..|..+|+.
T Consensus 154 ~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---------------e~dlfiaRaV-L~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 154 AAEKHLVLGTKESPEVLARMEYEWYKQDESH---------------TAPLYCARAV-LPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG---------------GHHHHHHHHH-HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHH-HHHHHhCCHHHHHHHHHH
Confidence 9998884322333356655555554432211 1122222222 236667777777776554
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.07 E-value=2.9 Score=36.79 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHhCCCC-ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHH----HH
Q 010837 61 PFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL----VR 135 (499)
Q Consensus 61 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~ 135 (499)
.+..+.-++.-++.|--- -...|..+..-|.+.+++++|++++.. -...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHH
Confidence 344444444444444111 224566677778888889888887654 33446667887666554 55
Q ss_pred HHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC--CCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV--KADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 136 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
.+.+.+++++......++..+...................+..+.|- .-++.....+...|.+.|++.+|..-|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 56667889998888877776633222222233444445555555542 2467788888999999999999988776333
Q ss_pred CCChHhHHHHHHHHHhC---CCHHHH
Q 010837 214 EKNVICSTSMISGFMSQ---GFVEDA 236 (499)
Q Consensus 214 ~~~~~~~~~l~~~~~~~---g~~~~a 236 (499)
..+...+..++.-+... |...++
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH
Confidence 23455666655555444 554443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.18 Score=50.42 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=47.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.+-|...|+++.|+++.+++...-|.. ..+|..|+.+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPse-F~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDS-FESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchh-hHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667889999999999999988887 8899999999999999999998888874
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.54 E-value=0.18 Score=37.40 Aligned_cols=92 Identities=12% Similarity=-0.034 Sum_probs=63.8
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHhh
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ---ALKFVLEMPEK--P--NSDVWAALLSSCRL 430 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~--~--~~~~~~~l~~~~~~ 430 (499)
..-.....+..+.+.|.+.... |. ++..+--.+..++.+...... ++.++++.... | .....-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444566667777666533 32 666666677778888776665 88888887763 3 23455566678889
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 010837 431 HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.|++++|.+.++.+++..|.+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999888876
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.08 E-value=2.1 Score=32.04 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=99.8
Q ss_pred HHHHHH--HHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 010837 288 SALVDM--YAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364 (499)
Q Consensus 288 ~~l~~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 364 (499)
..||++ ..-.|.+++..++..+...+ +..-||-+|.-....-+-+-..++++..-+. .| ....|
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~ 75 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQ 75 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhh
Confidence 344444 45568899999988887653 5556666666555555555555555554331 11 13445
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PE-KPNSDVWAALLSSCRLHDDVEMANIAAN 442 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (499)
++.....-+-.+- .+......-+..+..+|+-|+-.+++..+ .. +|++.....+..+|.+.|+..+|.+++.
T Consensus 76 NlKrVi~C~~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 76 NLKSVVECGVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CTHHHHHHHHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 6666666554432 23345566778888999999999999994 43 6889999999999999999999999999
Q ss_pred HHHhcCCC
Q 010837 443 EIFKLNAN 450 (499)
Q Consensus 443 ~~~~~~~~ 450 (499)
++-+.|..
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99988864
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.07 E-value=1.1 Score=33.80 Aligned_cols=69 Identities=12% Similarity=0.143 Sum_probs=43.7
Q ss_pred CCChhHHHHHHHHHHhcCCHH---HHHHHHHhCCC-CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 383 KPKMEHYACMVDLLGRAGSLE---QALKFVLEMPE-KP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 383 ~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.|+..+--.+.-++.+....+ +++.+++++.. .| .....-.|.-++.+.|++++|.+..+.+++..|.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455555555666666665443 56666666553 23 23344455667778888888888888888777766
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.02 E-value=4.4 Score=35.63 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=105.9
Q ss_pred HHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCc
Q 010837 87 LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166 (499)
Q Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~ 166 (499)
+..-...|++=+|.+. |.++..-|.+++++++|++++..-... +++.= ...--
T Consensus 20 l~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~ga~~-----------ll~~~-----Q~~sa 72 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQGALS-----------FLKAK-----QGGSG 72 (312)
T ss_dssp HHHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHTT-----CHHHH
T ss_pred HHHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHHHHH-----------HHHCC-----CcchH
Confidence 3344556777777764 456788899999999999998653221 11100 11111
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh-HHHHHHHhc-------cC---CChHhHHHHHHHHHhCCCHHH
Q 010837 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS-YARIVFDMM-------LE---KNVICSTSMISGFMSQGFVED 235 (499)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~-------~~---~~~~~~~~l~~~~~~~g~~~~ 235 (499)
.+.+..+.+...+.+++++......++..+.....-+ .-.++++++ .. .+......+...|.+.|++.+
T Consensus 73 ~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~ 152 (312)
T 2wpv_A 73 TDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYE 152 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHH
Confidence 2445556677777888888888888888776643221 112233333 11 267788889999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHhcCh--hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhc
Q 010837 236 AEEIFRKTVEKDIVVYNAMIEGYSISI--ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 236 a~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (499)
|...|-.....+...+..++..+.... +...++ +...-.+ +--|.-.|+...|..+|+..
T Consensus 153 A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra-VL~yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 153 AERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL-VFNYLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH-HHHHHHTTBHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH-HHHHHHhcCHHHHHHHHHHH
Confidence 998876332223445555554443221 111111 1111122 22355677888887777643
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.45 E-value=1.6 Score=30.39 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=68.4
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
-...-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 34567899999999988874 44444445566788999999999999999999999987765 567888888887878
Q ss_pred HHHcCCCCChhhHHH
Q 010837 137 LVSSGERPDGYTFSM 151 (499)
Q Consensus 137 m~~~g~~p~~~~~~~ 151 (499)
+..+| .|....|..
T Consensus 94 la~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 94 LGGSS-DPALADFAA 107 (115)
T ss_dssp HHTCS-SHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 87776 555555543
No 245
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.44 E-value=1.1 Score=33.27 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHH---HHHHHHHchHhcCCCC--ChhHHHHHHHHH
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK---GREIFESMERDYSMKP--KMEHYACMVDLL 396 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~p--~~~~~~~l~~~~ 396 (499)
+...........+.+-|.+....|. ++..+--.+..++.++++... ++.+++.+.+. + .| .....-.|.-++
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHH
Confidence 3333444455666667776666553 666666666677777776555 88888887732 2 24 344455667778
Q ss_pred HhcCCHHHHHHHHHhCCC-CCC
Q 010837 397 GRAGSLEQALKFVLEMPE-KPN 417 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~-~~~ 417 (499)
.+.|++++|.+.++.+.+ .|+
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhhHHHHHHHHHHHHHhCCC
Confidence 899999999998888776 453
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.18 E-value=0.4 Score=44.24 Aligned_cols=64 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCC
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFK-----LNAND 451 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 451 (499)
....++..+...|++++|+..+..+.. +-+...|..++.++.+.|+..+|++.|+++.+ .|.+|
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345566666677777777776666554 34566777777777777777777777766543 56666
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.18 E-value=0.99 Score=35.20 Aligned_cols=113 Identities=9% Similarity=0.023 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-HHHH
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQ-----KNV-------FTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY-VTFL 354 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-~~~~ 354 (499)
.-++.+...|.++.|+-+.+.+.. +++ .++..+.+++...|++..|...|++..+.. .-+.. .+..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 346666777777777766665431 221 244556677777777777777777753321 11111 1111
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (499)
.+- ....... ......+..+--.+..+|.+.+++++|+.+++.+..+
T Consensus 105 ~~~----~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG----NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 000 0000000 0112234455556778888888888888888888763
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.79 E-value=1.7 Score=30.26 Aligned_cols=90 Identities=17% Similarity=0.057 Sum_probs=66.9
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
-...-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++..-+.+
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44567899999999988874 444444455667889999999999999999999999887654 56777777777777
Q ss_pred HHHcCCCCChhhHHH
Q 010837 137 LVSSGERPDGYTFSM 151 (499)
Q Consensus 137 m~~~g~~p~~~~~~~ 151 (499)
+..+| .|....|..
T Consensus 95 la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 95 LARSQ-DPRIQTFVN 108 (116)
T ss_dssp HTTCC-CHHHHHHHH
T ss_pred HHhCC-CHHHHHHHH
Confidence 77665 455545443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.67 E-value=7.9 Score=35.43 Aligned_cols=89 Identities=9% Similarity=-0.069 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC----CC-----hhHHHHHHHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHH--
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQ----KN-----VFTWTSMIDGYGKNGNPNQALELFCMMQEC--CVQPNYVTFLG-- 355 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~-- 355 (499)
.++..|...|++.+|..++.++.+ .| ...+..-+..|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466677777777777666666543 11 223445556666777777777777665432 12233322211
Q ss_pred --HHHHHc-ccCcHHHHHHHHHHch
Q 010837 356 --ALSACG-HAGLVDKGREIFESME 377 (499)
Q Consensus 356 --ll~~~~-~~~~~~~a~~~~~~~~ 377 (499)
-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122344 5677777766665554
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.48 E-value=0.66 Score=34.60 Aligned_cols=68 Identities=12% Similarity=0.142 Sum_probs=33.8
Q ss_pred CChhHHHHHHHHHHhcCCH---HHHHHHHHhCCC-CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 384 PKMEHYACMVDLLGRAGSL---EQALKFVLEMPE-KP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 384 p~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
|+..+--.+.-++.+.... .+++.+++++.. .| ....+-.|.-++.+.|++++|.+..+.+++..|.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3434444444444444433 345555544443 22 23344445555666666666666666666665554
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.99 E-value=6.6 Score=42.02 Aligned_cols=159 Identities=9% Similarity=-0.014 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHhcChhhHH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 266 (499)
..++..+...+..+.+.++...... +......+..++...|++++|.+.|++.... +.... ....
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~-----------~~~~ 883 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------SSHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------hhhc
Confidence 3466667778888888776665544 4445567788899999999999999887521 11000 0000
Q ss_pred HHHHHHHHHHHccc--CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CC----hhHHHHHHHHHHhCCChhHHHH
Q 010837 267 KALEVHCQLIKNVF--FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KN----VFTWTSMIDGYGKNGNPNQALE 336 (499)
Q Consensus 267 ~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----~~~~~~l~~~~~~~g~~~~a~~ 336 (499)
. +..+..... ..-..-|..++..+.+.|.++.+.++-....+ .+ ...|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 011111111 11223566777778888888877766554331 22 1257888888889999999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 337 LFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
.+..+.....+ ...+..|+..+|..|..
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCCh
Confidence 88877664333 44556666666655543
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.75 E-value=1.3 Score=34.47 Aligned_cols=28 Identities=4% Similarity=-0.016 Sum_probs=22.1
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..-..+..+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3455688889999999999999887543
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.47 E-value=10 Score=35.50 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=47.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHcccCcHHHHHHHHHHchHhc---CCCCC--hhH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQEC--CVQPN---YVTFLGALSACGHAGLVDKGREIFESMERDY---SMKPK--MEH 388 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~p~--~~~ 388 (499)
..|...+...|++.+|.+++.++... |.... ...+..-+..|...+++.+|..++.++..+. ...|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665432 11111 1234444555666666666666666553211 11111 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
|...+..+...+++.+|.+.|.++.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4455555555666666655554433
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.28 E-value=2.7 Score=42.12 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=35.8
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHc
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 376 (499)
..+...|+++.|+++-++.... .+-+-.+|..|..+|...|+++.|.-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455677777777777777664 2334557777777777777777777766665
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.87 E-value=4.4 Score=38.01 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHcc-----cCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 263 ETARKALEVHCQLIKNV-----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
++.++|.+.+..+.+.. ..........++..|...|+++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66777777766665532 22334456667778888888877766655443
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.84 E-value=1.7 Score=30.44 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
+.-++.+-++.+....+.|++......+.+|-+.+++..|.++++-++.+.|-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566677777777788888888888999999999999999988888665543 445666664
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.51 E-value=5.3 Score=42.73 Aligned_cols=191 Identities=9% Similarity=0.044 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--------------------
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-------------------- 347 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-------------------- 347 (499)
..++..+.+.+..+.+.++..-. ..+....-.+..++...|++++|.+.|++... |+.
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccc
Confidence 34566677778877777655444 34454455667788889999999999876421 110
Q ss_pred ---CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-C--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHH
Q 010837 348 ---PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-K--MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDV 420 (499)
Q Consensus 348 ---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 420 (499)
.-..-|..++..+.+.|.++.+.++-+...+..+-.+ + ...|..+.+.+...|++++|...+-.+.. .--...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~c 973 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSC 973 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHH
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHH
Confidence 0112356677778888888888887777664322222 1 23678888888999999998888766544 223456
Q ss_pred HHHHHHHHhhcCCH------------HHHHHHHHHH-Hhc-CCCCCCchhHHHHHHHHhcCChHHHHH-HHHHHH
Q 010837 421 WAALLSSCRLHDDV------------EMANIAANEI-FKL-NANDRPGAYVALSNTLAAAGKWDSVTE-LREKMK 480 (499)
Q Consensus 421 ~~~l~~~~~~~~~~------------~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 480 (499)
+..|+...+..|.. ++..+++..- ... .+...+..|..|=..+...|++..|-. +|+...
T Consensus 974 Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 66666666655544 3444444322 222 233323344444455567777766544 444443
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.24 E-value=2.7 Score=38.66 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=49.2
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
....++.++...|+.+++...+..+... .| +...|..+|.+|.+.|+..+|++.|++...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~---~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE---HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667778899999999998888733 45 777899999999999999999999987654
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.94 E-value=14 Score=33.86 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=10.4
Q ss_pred HHHHHHhcCChHHHHHHHHhc
Q 010837 290 LVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~ 310 (499)
|...|.+.|+.++...++...
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444455555555555554443
No 260
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.66 E-value=28 Score=35.90 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=132.6
Q ss_pred HHHHhCCChhHHHHHHHhccCC----Ch--HhHHHHHHHHHhCCCHHHHHHHHHhcC-CCC--------h-h-hHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEK----NV--ICSTSMISGFMSQGFVEDAEEIFRKTV-EKD--------I-V-VYNAMIE 256 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~--------~-~-~~~~ll~ 256 (499)
-+....|+.++++.+++..... +. ..-..+.-+....|..+++..++.... .++ . . .-.++--
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466788888999988887652 22 233445556777777777877776654 222 1 1 1111111
Q ss_pred HHhcChhhHHHHHHHHHHHHHcccCCCchhHH--HHHHHHHhcCChHHHHHHHHhcCC-CChhH--HHHHHHHHHhCCCh
Q 010837 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGS--ALVDMYAKCGKIDDARRVFDHMQQ-KNVFT--WTSMIDGYGKNGNP 331 (499)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~g~~ 331 (499)
+++..+..-+++.+.+..+....-. ...... +|...+.-.|+-+....++..+.+ .+... ...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 1221211223555555555543211 111112 233334556777777777766543 22222 33344455578999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHH---HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010837 332 NQALELFCMMQECCVQPNYVTFL---GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
+.+..+++.+... ..|. .-|. .+.-+|+..|+.....+++..+..+ ...++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999998888763 1222 2232 3445788899988888899888742 223343333444445556776667777
Q ss_pred HHhCCCCCCHHH--HHHHHHHHhhcCCH-HHHHHHHHHHH
Q 010837 409 VLEMPEKPNSDV--WAALLSSCRLHDDV-EMANIAANEIF 445 (499)
Q Consensus 409 ~~~~~~~~~~~~--~~~l~~~~~~~~~~-~~a~~~~~~~~ 445 (499)
++.+.+..|..+ -..+.-+....|+. .++..++..+.
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 765555334333 22333333333332 56677777765
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.72 E-value=9.3 Score=30.87 Aligned_cols=50 Identities=8% Similarity=-0.140 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 402 LEQALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 402 ~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..++.++|..|.. .--+..|......+...|++++|.++|+..++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444433 2334445555555555555555555555555555444
No 262
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.56 E-value=2.3 Score=29.84 Aligned_cols=65 Identities=14% Similarity=0.145 Sum_probs=43.8
Q ss_pred hhCCC-ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 55 YINSD-TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 55 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
+.+.. +.-+.++-++.+....+-|++.+..+.+++|.|.+++..|.++|+.++. .....|..++.
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33444 5556667777777777788888888888888888888888888877652 22334555543
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.37 E-value=2.2 Score=31.71 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=42.6
Q ss_pred hhhCCC-ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHH
Q 010837 54 HYINSD-TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMI 118 (499)
Q Consensus 54 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 118 (499)
.+.+.. +.-+..+-++.+...++-|++.+..+.++++.+.+++..|.++|+.++. +.-..|..++
T Consensus 61 ~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 61 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 334444 5556666666666677778888888888888888888888887776652 2333455444
No 264
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.80 E-value=7.9 Score=28.82 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
.-+..+-++.+....+.|++......+.+|-+.+++..|.++|+-++.+.|-. ..+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 33566677777777889999999999999999999999999999988665543 456776665
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.72 E-value=9.2 Score=32.58 Aligned_cols=117 Identities=18% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh----HHHHHHHHHHhc
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME----HYACMVDLLGRA 399 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 399 (499)
...+.|.++++++....-++.. +-|...-..+++.+|-.|++++|.+-++... .+.|+.. .|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a---~l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCchhhHHHHHHHHHHHH----
Confidence 3456677777777776666642 4455555666777777777777777777666 2344322 33333332
Q ss_pred CCHHHHHHHHHhCCCC-----CCHHHHHHHHHHH--hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 400 GSLEQALKFVLEMPEK-----PNSDVWAALLSSC--RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+...+-+-.-... ....-...++.+. ...|+.++|.++-.++.+.-+..
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1122111111111 1222333444443 34577777777777776654433
No 266
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.80 E-value=55 Score=33.77 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=132.2
Q ss_pred HHcCCChhHHHHHhccCCC----CChH--HHHHHHHHHHhCCChhhHHHHHHHHHHcCC--CCC----hhhHHHHhhhcc
Q 010837 90 HLKCGALKYAGQMFDELPQ----RTLS--AYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPD----GYTFSMILKAST 157 (499)
Q Consensus 90 ~~~~~~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ll~~~~ 157 (499)
....|+.++++.+++.... .+.. .=..+.-+.+..|..+++++++.......- .-+ .......+ ++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL-GL- 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL-GI- 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH-HH-
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH-HH-
Confidence 5567888999999988764 1222 223344456667776778888877665321 011 11111111 11
Q ss_pred cccc--CCcCcchhHHHHHHHHHHcCCCCchhHHH--HHHHHHHhCCChhHHHHHHHhccCC-C--hHhHHHHHHHHHhC
Q 010837 158 CCRS--NVPLPRNLGRMVHAQILKCDVKADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEK-N--VICSTSMISGFMSQ 230 (499)
Q Consensus 158 ~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~l~~~~~~~ 230 (499)
|- ...++ +.+...+..+....- +...... +|...+.-.|+-+....++..+.+. + +.-...+.-++...
T Consensus 462 --Gla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 462 --GLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINY 537 (963)
T ss_dssp --HHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred --HHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhC
Confidence 10 22222 333444444433221 1111122 3344455677777767777665332 2 22233444556678
Q ss_pred CCHHHHHHHHHhcC-CCCh-hhHHH-HHH--HHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHH
Q 010837 231 GFVEDAEEIFRKTV-EKDI-VVYNA-MIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305 (499)
Q Consensus 231 g~~~~a~~~~~~~~-~~~~-~~~~~-ll~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 305 (499)
|+.+.+..+.+.+. ..+. .-|.. +.- +|+.. |+.....++++.+.+.. ..++.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT-Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGT-GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888877765 2332 22332 222 23333 66655566887777642 2233333333334555677777888
Q ss_pred HHHhcCC-CChhHHHH--HHHHHHhCCCh-hHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 306 VFDHMQQ-KNVFTWTS--MIDGYGKNGNP-NQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 306 ~~~~~~~-~~~~~~~~--l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+++.+.+ .|..+-.. +..+....|+. .++.+++..+.. .+|..+-...+.+
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIA 670 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHH
Confidence 8876653 34443332 33334444443 578888888864 4455543333333
No 267
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.35 E-value=18 Score=27.78 Aligned_cols=80 Identities=11% Similarity=0.118 Sum_probs=43.7
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 405 ALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 405 a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
+.+.|..... +.|..-...-+.-.-...+ +.++|..|...++... +..|...+..+...|++.+|.++++.-++.
T Consensus 54 c~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 54 LMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444433333 4455444444333322233 5666776666554432 344666666777777777777777776666
Q ss_pred CCccC
Q 010837 483 GVLKD 487 (499)
Q Consensus 483 ~~~~~ 487 (499)
+-.|-
T Consensus 131 ~A~P~ 135 (152)
T 4a1g_A 131 QAEPR 135 (152)
T ss_dssp TCBSH
T ss_pred CCccH
Confidence 65553
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=77.83 E-value=26 Score=28.33 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=23.8
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCC
Q 010837 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 232 (499)
++...-...+..+.+.|+.+....+.+.+..++...-...+.++.+.|+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3444444455555555554444444444444454444444455555444
No 269
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.51 E-value=21 Score=27.00 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHcccC---cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 347 QPNYVTFLGALSACGHAG---LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.|+..+--.+..++.++. +..+++.+++.+.+. +-.-.....--|.-++.+.|++++|++..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444443 344566666666632 1111233334455566666777777666666554
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.22 E-value=17 Score=25.36 Aligned_cols=88 Identities=13% Similarity=0.059 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (499)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|.++-. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 445566666666666544 22222222345677899999999999888889888877644 47788888888887887
Q ss_pred HcCCCCCHHHHHH
Q 010837 343 ECCVQPNYVTFLG 355 (499)
Q Consensus 343 ~~~~~p~~~~~~~ 355 (499)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555543
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.18 E-value=12 Score=34.73 Aligned_cols=61 Identities=7% Similarity=-0.067 Sum_probs=32.9
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYS-MKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
+...+..-|.+.|++++|.+.|.++..... ..-....+-..++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 344555556666666666666666653321 1112445555556666666666666555554
No 272
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.56 E-value=40 Score=28.78 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=4.7
Q ss_pred HHHHHHHhcCC
Q 010837 458 ALSNTLAAAGK 468 (499)
Q Consensus 458 ~l~~~~~~~g~ 468 (499)
..+.++.+.|.
T Consensus 240 ~a~~aL~~i~~ 250 (280)
T 1oyz_A 240 DIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhcCc
Confidence 33444444444
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.25 E-value=28 Score=27.09 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
-+..|......+-..|++.+|.++|+..++.+-.|
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 34445555555555555555555555555555444
No 274
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.41 E-value=19 Score=26.79 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHcccC---cHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 010837 347 QPNYVTFLGALSACGHAG---LVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN 417 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~ 417 (499)
.|+..|--.+..++.++. +..+++.+++.+.+. + | .....--|.-++.+.|++++|++..+.+.+ .|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 455555444444444444 455788888887743 3 4 344556677778888888888888888776 444
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.85 E-value=10 Score=32.34 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=40.1
Q ss_pred HHHhcCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPE-K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+.+.|++++|++....-.. + -|...-..|+..+|-.|++++|..-++...+.+|..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 45577888888776655443 3 355566667777888888888888888877777665
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.54 E-value=48 Score=28.00 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=38.6
Q ss_pred HHHHHhCCCHHHHHHHHHhc-CC---CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchh--HHHHHHHHHhc
Q 010837 224 ISGFMSQGFVEDAEEIFRKT-VE---KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL--GSALVDMYAKC 297 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 297 (499)
+...+..|+.+-+..+++.. .. .+....+.+..++.. +..+....+.+.+.+.|..++... -.+.+...++.
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~--~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS--SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC--SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc--cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 33344566666666666542 21 122222233333322 121233455666666666554321 12334445556
Q ss_pred CChHHHHHHHH
Q 010837 298 GKIDDARRVFD 308 (499)
Q Consensus 298 g~~~~a~~~~~ 308 (499)
|+.+-+..+++
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 66666666665
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=68.10 E-value=44 Score=26.64 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=27.4
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHH
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 234 (499)
.+|..+-...+..+.+.|+.+....+.+.+..++...-...+.++...|..+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~ 76 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER 76 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH
Confidence 3455555555555666665444455555555555555445555555555443
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.88 E-value=28 Score=24.34 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (499)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|.++-. .+.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 445566666666666554 22222222345677899999999999988889888877654 46677788887777777
Q ss_pred HcCCCCCHHHHHH
Q 010837 343 ECCVQPNYVTFLG 355 (499)
Q Consensus 343 ~~~~~p~~~~~~~ 355 (499)
.+| .|....|..
T Consensus 97 ~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 97 RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCC-CHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 765 555555543
No 279
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=66.23 E-value=24 Score=29.68 Aligned_cols=120 Identities=8% Similarity=-0.057 Sum_probs=62.4
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhh-------HHHHhhhccccccCCcCcchhHHHHHHHHHHcC---------
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYT-------FSMILKASTCCRSNVPLPRNLGRMVHAQILKCD--------- 181 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------- 181 (499)
+...++.|+.+....+++.+.+.|..++... .+.+..+... ...+..+.++.+++.-...+
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 85 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLN---LSAGRNDTIPILLDIAEKTGNMREFINSP 85 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTS---CBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHH---hhcCCHHHHHHHHHhcccccchHhhhccc
Confidence 4445677888888888888877776665332 2233333200 14566666666665543311
Q ss_pred CC-CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChH----------------hHHHHHHHHHhCCCHHHHHHHHH
Q 010837 182 VK-ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI----------------CSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 182 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
+. .|..-. +.+...+..|+.+-+.-+++.-...+.. .-.+.+...+..|+.+-+..+++
T Consensus 86 ~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 86 FRDVYYRGQ-TALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp BCCSSEESB-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccCCC-CHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 00 000111 2334455667777666666654332211 11233444456677777766666
No 280
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.06 E-value=17 Score=33.84 Aligned_cols=54 Identities=7% Similarity=-0.094 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCChhHHHHHhccCCC------CChHHHHHHHHHHHhCCChhhHHHHHHHH
Q 010837 84 IKLLILHLKCGALKYAGQMFDELPQ------RTLSAYNYMIAGYLKNGQVEESLSLVRKL 137 (499)
Q Consensus 84 ~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (499)
..+...|.+.|+++.|.+.|.++.. .-+..+-.+|+.+...+++..+...+++.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444444455555555554444331 12233444444444444444444444443
No 281
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.01 E-value=49 Score=26.37 Aligned_cols=50 Identities=8% Similarity=-0.057 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCCh
Q 010837 78 PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 127 (499)
++..+-...+..+.+.+.-+....+.+.+..++...-...+.++.+.|+.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH
Confidence 34444444444444444433344444444445555444455555555543
No 282
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.67 E-value=51 Score=26.50 Aligned_cols=49 Identities=8% Similarity=-0.045 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCC
Q 010837 78 PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 126 (499)
++..+-...+..+.+.|..+....+.+.+..++...-...+.++.+.|+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 4455555555555555554444444455555555555555555555554
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.34 E-value=32 Score=25.46 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKN---VFTWTSMIDGYGKNGN--PNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 350 (499)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 457777888999999999999987662 2344455555555432 45677788888777654433
No 284
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.02 E-value=33 Score=32.50 Aligned_cols=180 Identities=11% Similarity=0.115 Sum_probs=95.4
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCCCCh-------hH-HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNV-------FT-WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV---- 351 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---- 351 (499)
..++|.+++.|...+.++.|..+..+..-|.. .. +.-+...+.-.+++.+|.+.+......- +++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CcchhhhhH
Confidence 35678889999999999999999998865422 11 2234566677899999999988876642 22211
Q ss_pred ---H--HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010837 352 ---T--FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426 (499)
Q Consensus 352 ---~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 426 (499)
. |..++..+ .|++.. ..+|. ..++......|..|..++ +.|+.+.-...++.-..
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~------------ 369 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQ------------ 369 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHH------------
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcc------------
Confidence 1 11122211 233222 11111 112111233466677765 66777766555554332
Q ss_pred HHhhcCCHHHHHHHHHHHHh-----cCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 427 SCRLHDDVEMANIAANEIFK-----LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+.+.|.+--..++.....+ .....+......+...+ .....++|+.+.-+|+..|..
T Consensus 370 ~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL-~L~s~eeaE~iVAkmI~dG~I 432 (523)
T 4b4t_S 370 LLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKL-NLDSEQTVEYMVSRAIRDGVI 432 (523)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHH-HHHHSSCHHHHHHHHHHHTSS
T ss_pred eeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh-CCCCHHHHHHHHHHHHHcCCc
Confidence 23444554444443333332 22222222333333222 122345688888888887754
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=59.43 E-value=31 Score=25.53 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=11.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcC
Q 010837 222 SMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.++.-|...|+.++|...++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444444455555555555444
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=56.15 E-value=72 Score=26.24 Aligned_cols=36 Identities=8% Similarity=-0.015 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
--+..|......+...|++++|.++|+..++.+-+|
T Consensus 148 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 148 ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345566666666666677777777776666666555
No 287
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.81 E-value=61 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=36.2
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.++...+..+|..|..+ |+-- -...|......+...|++.+|.++|+...+
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34466778888888743 6555 455677777777888888888888877654
No 288
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=55.63 E-value=51 Score=27.48 Aligned_cols=121 Identities=7% Similarity=-0.116 Sum_probs=63.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHcCCCCCh-------hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCC-----
Q 010837 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDG-------YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA----- 184 (499)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----- 184 (499)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.+..++.. ...+..+.++.+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~---~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN---LQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHT---CBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHc---cccchHHHHHHHHhcCCcccchhhhccc
Confidence 344556778888888888888777765543 233344444210 11266666666665544332111
Q ss_pred -----chhHHHHHHHHHHhCCChhHHHHHHHhccCCChHh---------------HHHHHHHHHhCCCHHHHHHHHH
Q 010837 185 -----DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC---------------STSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 185 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
|..-. +.+...+..|+.+-+..+++.-...+... -.+.+...+..|+.+-+..+++
T Consensus 82 ~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 82 QCTDEFYQGH-SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp CCCSTTTTTC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccccccCC-CHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11122 23444556777777666666543322110 1223344455677776666666
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=55.41 E-value=31 Score=26.47 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKN---VFTWTSMIDGYGKNGN--PNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 350 (499)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 457777888999999999999987662 2344455555555332 45577778888776654433
No 290
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.42 E-value=41 Score=28.11 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=17.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHH
Q 010837 117 MIAGYLKNGQVEESLSLVRKLVS 139 (499)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~ 139 (499)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46677778888888888887654
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.31 E-value=45 Score=25.54 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=11.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcC
Q 010837 222 SMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.++.-|...|+.++|...++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 34444555555555555555554
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.47 E-value=1.3e+02 Score=26.30 Aligned_cols=194 Identities=13% Similarity=0.114 Sum_probs=93.7
Q ss_pred HHHHHHHHHcCCChhHHHHHhccCCCCCh--HHHHHHHHHHHhCCC--hhhHHHHHHHHHHcCCCCChhh---HHHHhhh
Q 010837 83 SIKLLILHLKCGALKYAGQMFDELPQRTL--SAYNYMIAGYLKNGQ--VEESLSLVRKLVSSGERPDGYT---FSMILKA 155 (499)
Q Consensus 83 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~ 155 (499)
...++.-|...|+.++|...++++..|.- ..-..++......++ -+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999986642 223344444443433 2445567777754 33333222 3333322
Q ss_pred ccccccCCcCcchhHHHHHHHHH----HcCC-CCchhHHHHHHHHHHhCCC--hhHHHHHHHh------ccC----C---
Q 010837 156 STCCRSNVPLPRNLGRMVHAQIL----KCDV-KADDVLYTALVDSYVKGGK--TSYARIVFDM------MLE----K--- 215 (499)
Q Consensus 156 ~~~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~------~~~----~--- 215 (499)
+- -..-+...|..++..+. ..|+ +|... ....-..-...|. ...|..++.. +.. .
T Consensus 85 ld----Dl~lD~P~a~~~la~flaraV~d~~l~~~~l-~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~ 159 (307)
T 2zu6_B 85 LP----ELALDTPRAPQLVGQFIARAVGDGILCNTYI-DSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 159 (307)
T ss_dssp HH----HHHHHCTTHHHHHHHHHHHHHHTTSSCTTTT-GGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTT
T ss_pred hh----HhcccccchHHHHHHHHHHHHHhCCCCHHHH-HHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCC
Confidence 20 11112222333322222 2222 22111 0000000000000 1222222210 000 0
Q ss_pred -Ch----HhHHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHhcC-hhhHHHHHHHHHHHHHcccCC
Q 010837 216 -NV----ICSTSMISGFMSQGFVEDAEEIFRKTVEKD---IVVYNAMIEGYSIS-IETARKALEVHCQLIKNVFFE 282 (499)
Q Consensus 216 -~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 282 (499)
.. .....++.-|...|+.++|...++++..|. ......+..++-+. ....+....++..+.+.|+-+
T Consensus 160 ~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 11 234667888989999999999999997662 22334444444443 233455667777777666543
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.00 E-value=1.2e+02 Score=25.83 Aligned_cols=74 Identities=7% Similarity=0.019 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHH
Q 010837 230 QGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307 (499)
Q Consensus 230 ~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 307 (499)
..+.++..+++..-. ..|....+.+..++. . |.. ++.+.+.+.|..++...-.+.+...+..|+.+-+..++
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~L~~A~~-~-g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSASYYAIA-D-NNV----RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCHHHHHHH-T-TCH----HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCHHHHHHH-c-CCH----HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 445555666654431 223333333333332 2 333 23344445555444332233444455566666666655
Q ss_pred Hh
Q 010837 308 DH 309 (499)
Q Consensus 308 ~~ 309 (499)
+.
T Consensus 83 ~~ 84 (285)
T 3kea_A 83 FS 84 (285)
T ss_dssp HT
T ss_pred HC
Confidence 54
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.75 E-value=1.1e+02 Score=25.70 Aligned_cols=52 Identities=10% Similarity=0.029 Sum_probs=23.8
Q ss_pred HHHHHHhCCChhHHHHHHHhccCCChH---hHHHHHHHHHhCCCHHHHHHHHHhc
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEKNVI---CSTSMISGFMSQGFVEDAEEIFRKT 243 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 243 (499)
.+...++.|+.+....+++.-...+.. .-.+.+...+..|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 344455566666665555543322111 1112333444555555555555443
No 295
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=49.23 E-value=93 Score=26.19 Aligned_cols=120 Identities=11% Similarity=-0.038 Sum_probs=56.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCC-------ChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc---------C
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERP-------DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC---------D 181 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p-------~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~---------~ 181 (499)
+...++.|+.+.+..+++.....+... |..-.+.+..++.. ...+..+.++.+++.-... +
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~---~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~ 93 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN---LHNGQNDTIALLLDVARKTDSLKQFVNAS 93 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHS---CBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHH---HhcCChHHHHHHHHhhccccchhHHhhcc
Confidence 334456778877777777766555332 22233334333310 1235555555555543221 1
Q ss_pred CC-CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChH----------------hHHHHHHHHHhCCCHHHHHHHHH
Q 010837 182 VK-ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI----------------CSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 182 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
.. .|..-.+ .+...+..|+.+-+..+++.-...+.. .-.+.+...+..|+.+-+..+++
T Consensus 94 ~~~~d~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 94 YTDSYYKGQT-ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp CCSTTTTTCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCCC-HHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11 1112222 233345667776666666653332211 01223344455677776666666
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=48.55 E-value=1e+02 Score=24.70 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 402 LEQALKFVLEMPEKPNSD-------VWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+.|+.+|+.+...-+.. .-...+..|.+.|.+++|.++|++..+....+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----C
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCc
Confidence 455666666666532211 11223345777777777777777766555443
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.34 E-value=1e+02 Score=29.21 Aligned_cols=58 Identities=10% Similarity=0.015 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHhccCCCh-------Hh-HHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNV-------IC-STSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~-~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
..+|.++..|...+.++.|..+..+..-|.. .. +.-+...+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3456666666666667777766666644311 11 1223445556666666666665544
No 298
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.25 E-value=1.5e+02 Score=30.98 Aligned_cols=53 Identities=2% Similarity=-0.158 Sum_probs=30.3
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
++..|...|..+-|.++.... +.+...--.+..+|...|++++|...|+++-.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 445555666666554433222 22333334566677777888888888876653
No 299
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.66 E-value=1.6e+02 Score=25.63 Aligned_cols=78 Identities=6% Similarity=0.004 Sum_probs=40.3
Q ss_pred HHHHHHHHcccCCCchh--HHHHHHHHHhcCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 270 EVHCQLIKNVFFEDVKL--GSALVDMYAKCGKIDDARRVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
.+.+.+.+.|..++... -.+.+...+..|..+.+..+++.-. ..|..-++.|..+ ++.|+.+ +.+.+.+
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll~ 294 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA-VELKLKK----IAELLCK 294 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHHH
Confidence 34455667776665432 1234445667788877777765321 1233333333333 3455543 3444556
Q ss_pred cCCCCCHHH
Q 010837 344 CCVQPNYVT 352 (499)
Q Consensus 344 ~~~~p~~~~ 352 (499)
.|..+|..+
T Consensus 295 ~GAd~n~~~ 303 (337)
T 4g8k_A 295 RGASTDCGD 303 (337)
T ss_dssp TSCSSTTCC
T ss_pred CCCCCCCCC
Confidence 676666543
No 300
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=43.31 E-value=76 Score=21.65 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChh
Q 010837 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (499)
...+++.+.+.|+ .+..-+..+-. .....+.|..+++.++.++..+|..++.++...+...
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 4568888888885 44444444333 4678899999999999999999999999998877643
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.06 E-value=1e+02 Score=25.04 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=13.9
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCC
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERP 144 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (499)
...++.|+.+.+..+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33455566666655665555554443
No 302
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=41.45 E-value=78 Score=28.51 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCCC
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEKN 216 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (499)
...++.=|...|+.++|.+.++++..|+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~ 42 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPK 42 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCch
Confidence 4567777778888888888888876663
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.79 E-value=80 Score=26.30 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+.......+..+.+.|+-++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 333444455566666666666666644
No 304
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.53 E-value=2.8e+02 Score=27.36 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc---C
Q 010837 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC---G 298 (499)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g 298 (499)
.....+.-.|+++.|.+++-+.-..+.+.+...+..+ |.... -+.+......-...-+..||..|.+. .
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~----gLL~~----~~~lls~~~~~~~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASL----KLFKI----DSSTRLTKKPKRDIRFANILANYTKSFRYS 370 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHT----TC---------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHc----CCccC----CCcccccCCCcccccHHHHHHHHHHHhhcC
Confidence 3556677788888888888766333334444444443 22111 11111110000122355677777654 6
Q ss_pred ChHHHHHHHHhcCCC
Q 010837 299 KIDDARRVFDHMQQK 313 (499)
Q Consensus 299 ~~~~a~~~~~~~~~~ 313 (499)
+..+|.+.|--+.-.
T Consensus 371 d~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 371 DPRVAVEYLVLITLN 385 (661)
T ss_dssp CHHHHHHHHHGGGGS
T ss_pred CHHHHHHHHHHHhcc
Confidence 777787777666433
No 305
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.46 E-value=1.4e+02 Score=23.97 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHH---HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC
Q 010837 117 MIAGY---LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183 (499)
Q Consensus 117 li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (499)
+|+++ .|..+.+.|+-.+-+|++.| .|.-..-..++-+.-.-|.....-...+...++.....|++
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 55554 45788999999999999999 66655555555554222222222334445555555556644
No 306
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.99 E-value=79 Score=29.06 Aligned_cols=357 Identities=10% Similarity=0.023 Sum_probs=174.1
Q ss_pred HHHHHHcCCChhHHHHHhccCCCCChH--HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCh---hhHHHHhhhccccc
Q 010837 86 LLILHLKCGALKYAGQMFDELPQRTLS--AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG---YTFSMILKASTCCR 160 (499)
Q Consensus 86 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~ 160 (499)
.+..-+..|+++-+..+++.-..++.. ...+.+...++.|+.+-+. .+.+.|..++. ...+.+..+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A----- 87 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK----YLLQNKAKVNAKAKDDQTPLHCA----- 87 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHH----HHHHHTCCSSCCCTTSCCHHHHH-----
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCCCHHHHH-----
Confidence 345556789999998888875444322 1234566778888865444 44444544432 222233333
Q ss_pred cCCcCcchhHHHHHHHHHHcCCCCchhH--HHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHH
Q 010837 161 SNVPLPRNLGRMVHAQILKCDVKADDVL--YTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVED 235 (499)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 235 (499)
...+.. .+.+.+.+.|..++... -.+.+...++.|+.+.+..+++.-... +...+ +.+...+..|+.+-
T Consensus 88 -~~~g~~----~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 88 -ARIGHT----NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRV 161 (437)
T ss_dssp -HHHTCH----HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTTCHHH
T ss_pred -HHCCCH----HHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC-CHHHHHHHcCCHHH
Confidence 333333 34555556665554321 122344556778888777777664332 11111 23445567788887
Q ss_pred HHHHHHhcCCCCh---hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhH--HHHHHHHHhcCChHHHHHHHHhc
Q 010837 236 AEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 236 a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~ 310 (499)
+..+++.-..++. ...+.+..++ .. +.. ++.+.+.+.|..++.... .+.+...++.|+.+-+..+++.-
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~-~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAV-HH-NNL----DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHH-HT-TCH----HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHH-Hc-CCH----HHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 7777776543322 2222233222 22 332 355556666665544321 23445566778888777777654
Q ss_pred CC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC
Q 010837 311 QQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384 (499)
Q Consensus 311 ~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p 384 (499)
.. .+....+.+.. .+..|+.+- ++.+.+.|..++. ...+.+. ..+..|+.+-+..+++. |..+
T Consensus 236 ~~~~~~~~~g~t~L~~-A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll~~-----g~~~ 304 (437)
T 1n11_A 236 GSANAESVQGVTPLHL-AAQEGHAEM----VALLLSKQANGNLGNKSGLTPLH-LVAQEGHVPVADVLIKH-----GVMV 304 (437)
T ss_dssp CCTTCCCTTCCCHHHH-HHHTTCHHH----HHHHHTTTCCTTCCCTTCCCHHH-HHHHHTCHHHHHHHHHH-----TCCT
T ss_pred CCCCCCCCCCCCHHHH-HHHCCCHHH----HHHHHhcCCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhC-----CccC
Confidence 32 22223333333 345566543 3344445544332 1122222 23345666555444433 3332
Q ss_pred C---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc--hhH
Q 010837 385 K---MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG--AYV 457 (499)
Q Consensus 385 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 457 (499)
+ ..-.+.| ...+..|+.+-+.-+++.-.. ..+..-.+.| ...+..|+.+ +.+.+++.|..++.. .-.
T Consensus 305 ~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~----iv~~Ll~~ga~~~~~~~~g~ 378 (437)
T 1n11_A 305 DATTRMGYTPL-HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTD----IVTLLLKNGASPNEVSSDGT 378 (437)
T ss_dssp TCCCSSCCCHH-HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCSCCCCSSSC
T ss_pred CCCCCCCCCHH-HHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHH----HHHHHHHCcCCCCCCCCCCC
Confidence 2 1122233 334566777776666665332 1222222222 2334556655 344455556554321 112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+-+....+.|. .+..++++....
T Consensus 379 t~l~~A~~~g~-~~~~~~l~~~~~ 401 (437)
T 1n11_A 379 TPLAIAKRLGY-ISVTDVLKVVTD 401 (437)
T ss_dssp CHHHHHHHTTC-HHHHHHHHHHCC
T ss_pred CHHHHHHHcCc-HHHHHHHHhccc
Confidence 23333345555 455566665543
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.97 E-value=1.1e+02 Score=24.80 Aligned_cols=55 Identities=13% Similarity=0.075 Sum_probs=26.2
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCch--hHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGA--YVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+..|+.+-+. .+++.|..++... -.+-+....+.|+.+-+.-+++...+.+
T Consensus 181 L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 181 LHWAVLAGNTTVIS----LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHTCHHHHH----HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 33445667766443 3444454443221 1234455567777766666665544443
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.41 E-value=1e+02 Score=23.19 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=14.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
..+..-.|.++++.+.+.+...+..|....+..+
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 3333444444444444443333444433333333
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=37.00 E-value=2.2e+02 Score=25.17 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCC
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEK 215 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (499)
..++.=|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 45566666667777777777776554
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.52 E-value=36 Score=23.63 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhH
Q 010837 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130 (499)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 130 (499)
.+++.+.+.|+ .+......+-. .......+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 47777888775 34433333222 10125789999999999999999999999999877775544
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.16 E-value=88 Score=24.20 Aligned_cols=46 Identities=7% Similarity=-0.007 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHhCCC---CC--CHHHHHHHHH-H-----HhhcCCHHHHHHHHHHH
Q 010837 399 AGSLEQALKFVLEMPE---KP--NSDVWAALLS-S-----CRLHDDVEMANIAANEI 444 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~---~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~ 444 (499)
.|++-+|-++|+..-. .+ ....|..||. . ..+.|+...|..++++.
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3666666666665543 12 3345555555 2 13456666666555543
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.98 E-value=65 Score=22.33 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=27.3
Q ss_pred CChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHH
Q 010837 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (499)
...+.|.++++.++.++..+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 45677778888887777777777777777666655553
No 313
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.86 E-value=90 Score=25.43 Aligned_cols=83 Identities=6% Similarity=-0.126 Sum_probs=44.0
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHH--HHHHHHHHHcCCChhHHHHHhccCCCC---ChHHHHHHHHHHHhCCC
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNI--SIKLLILHLKCGALKYAGQMFDELPQR---TLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~ 126 (499)
+...+..|+.+....+++.+.+.|..++... -...+...+..|+.+-+..+++.-..+ +..-++ .+...+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCC
Confidence 4444566888888888877777665544321 112344455677777777776654332 221222 2333445666
Q ss_pred hhhHHHHHH
Q 010837 127 VEESLSLVR 135 (499)
Q Consensus 127 ~~~a~~~~~ 135 (499)
.+-+..+++
T Consensus 92 ~~~~~~Ll~ 100 (241)
T 1k1a_A 92 PTCLRALLD 100 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.00 E-value=1.5e+02 Score=22.39 Aligned_cols=45 Identities=7% Similarity=0.025 Sum_probs=21.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 364 (499)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444445555566665555544445544444444444333
No 315
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.83 E-value=1.4e+02 Score=23.99 Aligned_cols=19 Identities=0% Similarity=-0.178 Sum_probs=9.3
Q ss_pred HHHHcCCChhHHHHHhccC
Q 010837 88 ILHLKCGALKYAGQMFDEL 106 (499)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~ 106 (499)
...++.|+.+-+..+++.-
T Consensus 47 ~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHcC
Confidence 3344455555555555443
No 316
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.76 E-value=1.9e+02 Score=23.18 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHH---HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhc
Q 010837 116 YMIAGY---LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 116 ~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
.+|+++ .|..+.+.|+-.+-+|++.|..|.-..-..++-+.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355555 45688999999999999998777666655665554
No 317
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.73 E-value=2e+02 Score=23.35 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHH---HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC
Q 010837 116 YMIAGY---LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183 (499)
Q Consensus 116 ~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (499)
.+|+++ .|..+.+.|+-.+-+|++.|..|.-..-..++-+.-.-|.....-...+...++.....|++
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 355555 45789999999999999999888776666666665333334444445555566666666654
No 318
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.69 E-value=1.7e+02 Score=22.75 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHhCCCHHHHHHHHHhc-CC---CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhH--HHHHHHHHhcCC
Q 010837 226 GFMSQGFVEDAEEIFRKT-VE---KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGK 299 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~ 299 (499)
..+..|+.+-+..+++.. .. .|..-.+.+..++... .....-.++.+.+.+.|..++.... .+.+...++.|+
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~-~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR-EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS-CCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc-cchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 344566776666666655 21 2222233333333222 1112335566666777766654321 123334445555
Q ss_pred hHHHHHH
Q 010837 300 IDDARRV 306 (499)
Q Consensus 300 ~~~a~~~ 306 (499)
.+-+.-+
T Consensus 191 ~~~~~~L 197 (201)
T 3hra_A 191 TEISKIL 197 (201)
T ss_dssp HHHHHHH
T ss_pred HhHHHHH
Confidence 5544433
No 319
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.26 E-value=20 Score=22.27 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=15.3
Q ss_pred hcCChHHHHHHHHHHHhCCCccCc
Q 010837 465 AAGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
..|+++.|...+-.|...+..|+.
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCCC
Confidence 345677777777666666666554
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.08 E-value=2.2e+02 Score=23.27 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=13.8
Q ss_pred HHHHcccCcHHHHHHHHHHch
Q 010837 357 LSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..|.+.|.+++|.+++++..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHhcchHHHHHHHHHHh
Confidence 345666677777777776666
No 321
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.53 E-value=1.2e+02 Score=23.32 Aligned_cols=13 Identities=0% Similarity=0.074 Sum_probs=5.3
Q ss_pred cHHHHHHHHHHch
Q 010837 365 LVDKGREIFESME 377 (499)
Q Consensus 365 ~~~~a~~~~~~~~ 377 (499)
..-.|.++++.+.
T Consensus 47 ~h~sA~eI~~~l~ 59 (162)
T 4ets_A 47 THYTPESLYMEIK 59 (162)
T ss_dssp SCBCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 3334444444443
No 322
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.48 E-value=2.5e+02 Score=23.52 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCC
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 231 (499)
..+..+.+.|..+....+.+.+..++...-...+.++.+.|
T Consensus 42 ~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 42 SSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 33444444443322223333333344444444445555544
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=29.45 E-value=1.1e+02 Score=22.52 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4556666666777888888888877666677776666666666553
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=28.97 E-value=2e+02 Score=22.32 Aligned_cols=172 Identities=11% Similarity=0.028 Sum_probs=79.2
Q ss_pred HHHhcCChHHHHHHHHhcC-C---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHcccCc
Q 010837 293 MYAKCGKIDDARRVFDHMQ-Q---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV---TFLGALSACGHAGL 365 (499)
Q Consensus 293 ~~~~~g~~~~a~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~ 365 (499)
..+..|+.+....++..-. . .+...++.+..+ +..|+.+ +++.+.+.|..++.. ..+.+..+ +..|+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~ 84 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYA-GAQGR 84 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTC
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCC
Confidence 3456677777777776543 1 233333333333 3445543 444444555544322 22233333 34567
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAAN 442 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (499)
.+-+..+++....... ..+..-.+. +...+..|+.+-+..+++.-.. ..+..-.+.|..++........-.++.+
T Consensus 85 ~~~~~~Ll~~~~~~~~-~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 85 TEILAYMLKHATPDLN-KHNRYGGNA-LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHHHSCCCTT-CCCTTSCCS-HHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHHhccCcccc-cccCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 6666555533210100 111111122 2334567888888777777622 2233233334333333222333355666
Q ss_pred HHHhcCCCCCCchh--HHHHHHHHhcCChHHH
Q 010837 443 EIFKLNANDRPGAY--VALSNTLAAAGKWDSV 472 (499)
Q Consensus 443 ~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 472 (499)
.+++.|..++.... .+-+....+.|+.+-+
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~ 194 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEIS 194 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHH
Confidence 67777766543221 1233344455665433
No 325
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.31 E-value=1.5e+02 Score=25.95 Aligned_cols=63 Identities=14% Similarity=0.235 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKN---VFTWTSMIDGYGKNGN--PNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 350 (499)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 457777888899999999999988762 2344445555554433 45566778887776654433
No 326
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=28.21 E-value=3.1e+02 Score=24.09 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc---CC
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GS 401 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 401 (499)
+...|++++|+..|+... +...+.......+.+++.+++....+ .+...-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE--------Yilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE--------YILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHhCCC-----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 402 LEQALKFVLEMPE-----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 402 ~~~a~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
..+.+++-.-+.. ..-..+...-+..+.+.+++..|..+.+++++.++.+ ... ++|.+++
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~~a--------------~qArkil 250 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG-PRA--------------EQARKIK 250 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-HHH--------------HHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-HHH--------------HHHHHHH
Q ss_pred HHHHhCC
Q 010837 477 EKMKLRG 483 (499)
Q Consensus 477 ~~~~~~~ 483 (499)
....+.+
T Consensus 251 ~~ce~~~ 257 (325)
T 3mv2_A 251 NKADSMA 257 (325)
T ss_dssp HHHHTSC
T ss_pred HHHhcCC
No 327
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.13 E-value=88 Score=25.50 Aligned_cols=80 Identities=6% Similarity=-0.066 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHhcCChHHH
Q 010837 397 GRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG--AYVALSNTLAAAGKWDSV 472 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A 472 (499)
+..|+.+-+.-+++.-.. ..+..-. +.+...++.|+.+-+ +.+++.|.+++.. .-.+-+......|+.+.+
T Consensus 152 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 152 AFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp HHHCCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 445666655555544322 1111111 122333455665533 3344445444221 112334444566777777
Q ss_pred HHHHHHHHh
Q 010837 473 TELREKMKL 481 (499)
Q Consensus 473 ~~~~~~~~~ 481 (499)
.++.+.+.+
T Consensus 227 ~~l~~~l~d 235 (237)
T 3b7b_A 227 LQMSKALQD 235 (237)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 777777654
No 328
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=26.81 E-value=1.2e+02 Score=22.67 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=35.9
Q ss_pred HHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChh
Q 010837 49 PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97 (499)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (499)
..++..+...+..-.|.++++.+.+.+...+..|.-..+..+.+.|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3456666666677788889888888876677777666777888777544
No 329
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=26.25 E-value=1.6e+02 Score=20.03 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHH
Q 010837 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (499)
....++|.++++.+..++..++..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677788888888888888888888887777654444
No 330
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.93 E-value=1.1e+02 Score=22.46 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=35.3
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChh
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (499)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 455566666677888899999888876677777777788888877543
No 331
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.84 E-value=3e+02 Score=23.21 Aligned_cols=17 Identities=0% Similarity=0.047 Sum_probs=9.0
Q ss_pred HHHhCCChhHHHHHHHh
Q 010837 195 SYVKGGKTSYARIVFDM 211 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~ 211 (499)
..+..|+.+-+..+++.
T Consensus 37 ~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 34455666555555544
No 332
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.56 E-value=3.8e+02 Score=24.28 Aligned_cols=320 Identities=10% Similarity=0.068 Sum_probs=143.6
Q ss_pred HHHHHHHHHcCCCCChhhHH--HHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchh--HHHHHHHHHHhCCChhHHH
Q 010837 131 LSLVRKLVSSGERPDGYTFS--MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV--LYTALVDSYVKGGKTSYAR 206 (499)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 206 (499)
.++++.+.+.|..|+..... +.+... ...+.. ++.+.+.+.|..++.. .-.+.+...++.|+.+-+.
T Consensus 27 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~A-----~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~ 97 (437)
T 1n11_A 27 LPIVKNLLQRGASPNVSNVKVETPLHMA-----ARAGHT----EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97 (437)
T ss_dssp HHHHHHHHHTTCCSCCSSSCCCCHHHHH-----HHHTCH----HHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHH-----HHcCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 77888888887777654321 223332 233333 3444445555544322 1123344455667776666
Q ss_pred HHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHccc
Q 010837 207 IVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280 (499)
Q Consensus 207 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 280 (499)
-+++.-..++ ...+ +.+...+..|+.+-+..+++.-... +...++.+..++ .. +.. ++.+.+.+.|.
T Consensus 98 ~Ll~~ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~-~~-g~~----~~v~~Ll~~g~ 170 (437)
T 1n11_A 98 LLLENNANPNLATTAGH-TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAA-KY-GKV----RVAELLLERDA 170 (437)
T ss_dssp HHHHHTCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HT-TCH----HHHHHHHHTTC
T ss_pred HHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHH-Hc-CCH----HHHHHHHhCCC
Confidence 6665533321 1112 2233445667777777777654422 222222222222 22 333 34455556665
Q ss_pred CCCchh--HHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HH
Q 010837 281 FEDVKL--GSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY---VT 352 (499)
Q Consensus 281 ~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~ 352 (499)
.++... -.+.+...+..|+.+-+.-+++.-..+ +...++.+. ..+..|+.+- ++.+.+.|..++. ..
T Consensus 171 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g 245 (437)
T 1n11_A 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH-IAAKQNQVEV----ARSLLQYGGSANAESVQG 245 (437)
T ss_dssp CTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCTTC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHH-HHHHcCCHHH----HHHHHHcCCCCCCCCCCC
Confidence 554321 122344455667776666665543332 222222332 3345566443 3344444443332 12
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSS 427 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~ 427 (499)
.+.+.. .+..|+.+-+..+++. +..++ ..-.+. +...++.|+.+-+.-+++.-.. ..+..-.+. +..
T Consensus 246 ~t~L~~-A~~~g~~~~v~~Ll~~-----~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~~ 317 (437)
T 1n11_A 246 VTPLHL-AAQEGHAEMVALLLSK-----QANGNLGNKSGLTP-LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP-LHV 317 (437)
T ss_dssp CCHHHH-HHHTTCHHHHHHHHTT-----TCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH-HHH
T ss_pred CCHHHH-HHHCCCHHHHHHHHhc-----CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH-HHH
Confidence 223332 3345665544444332 32222 111222 2334466777776666665332 112111222 233
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCch--hHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGA--YVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.+..|+.+-+ +.+++.|..++... -.+-+..-++.|+.+ +.+.+.+.|..++
T Consensus 318 A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~----iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 318 ASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPN 371 (437)
T ss_dssp HHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHHHHHCChHH----HHHHHHHCcCCCC
Confidence 3456666543 44445555443221 112233334566654 4444556676665
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.53 E-value=2.8e+02 Score=22.67 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=34.5
Q ss_pred HHHHHHHHHHchHhcCCCCCh-h-----HHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 010837 366 VDKGREIFESMERDYSMKPKM-E-----HYACMVDLLGRAGSLEQALKFVLEMPEKP 416 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~-~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 416 (499)
++.|..+|+.+.+...+..+. . +--..+-.|.+.|.+++|.+++++...+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 678888888888654332221 1 11233455788999999999999888743
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.24 E-value=99 Score=23.07 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=26.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 364 (499)
.++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344555555556667777777766665566666555555555444
No 335
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.44 E-value=64 Score=19.96 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHhhhc
Q 010837 127 VEESLSLVRKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
.++|.+.|.+|++..-.++..||..+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367788888877765455567777777665
No 336
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.17 E-value=2.2e+02 Score=22.77 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHh----cCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHc
Q 010837 288 SALVDMYAKCGKIDDARRVFDH----MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL--GALSACG 361 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~ 361 (499)
+..+...++.|+++....+++. ....+...++.|..+..... .++++.+.+.|..++..... ..+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIA 440 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (499)
..|+.+-+..+++.-. .+......-...+...+..|+.+-+..+++.-.. ......-...+...+..|+.+-+..+
T Consensus 82 ~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 82 SAGXDEIVKALLVKGA---HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHTCHHHHHHHHHTTC---CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HcCHHHHHHHHHHcCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
++.-...+... ..-...+-.+..... .++++.+.+.|..++
T Consensus 159 l~~g~~~~~~~-~~g~t~L~~A~~~~~-----~~~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 159 LFYKASTNIQD-TEGNTPLHLACDEER-----VEEAKFLVTQGASIY 199 (231)
T ss_dssp HHTTCCSCCCC-TTSCCHHHHHHHTTC-----HHHHHHHHHTTCCSC
T ss_pred HhcCCCccccC-CCCCCHHHHHHHCCC-----HHHHHHHHHCCCCCC
No 337
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.94 E-value=2.5e+02 Score=21.70 Aligned_cols=50 Identities=4% Similarity=-0.027 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCCC-CchhHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 010837 437 ANIAANEIFKLNANDR-PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 486 (499)
..++|..|...++... +..|...+..+...|++.+|.++++.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3345555555443321 2334455555555555555555555555555444
No 338
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.80 E-value=4.8e+02 Score=24.83 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=20.3
Q ss_pred CchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 453 PGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
......|-+.|.+.|++-+|-+++..+...
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 445566666777777777777777777655
No 339
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.77 E-value=6.2e+02 Score=26.14 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHcccCc---HHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 010837 354 LGALSACGHAGL---VDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429 (499)
Q Consensus 354 ~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~ 429 (499)
..++...|..|. .+.|.+.|+.......-.+ .......+...-.+.|.-++-..+++......+..--..++.++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL~ 769 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSALA 769 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHhC
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
...+.....++++.++..+.-........+.......--.+.|.+.+..
T Consensus 770 ~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 770 CSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp TCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHH
No 340
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.76 E-value=3.8e+02 Score=23.64 Aligned_cols=60 Identities=8% Similarity=0.174 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCh---hHHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCC
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKNV---FTWTSMIDGYGKNG-NPNQALELFCMMQECCVQ 347 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~~~~ 347 (499)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.. .-+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 4477778889999999999999987632 22333333332221 234556677777766543
No 341
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.15 E-value=1.7e+02 Score=21.92 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
.-.|.++++.+.+.+...+..|.-.-+..+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L 62 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELL 62 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHH
Confidence 344555555554444344444433333333
No 342
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=22.55 E-value=2.2e+02 Score=22.02 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=12.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCC
Q 010837 222 SMISGFMSQGFVEDAEEIFRKTVEK 246 (499)
Q Consensus 222 ~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
.++.-|...|+.++|...++++..|
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 3444455555555555555555433
No 343
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=22.37 E-value=3.8e+02 Score=23.14 Aligned_cols=268 Identities=13% Similarity=0.005 Sum_probs=121.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCCh---H-hHHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHHHHHhcChh
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKNV---I-CSTSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIE 263 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~ 263 (499)
+.+...++.|+.+-+..+++.-...|. . -++. +...+..|+.+-+.-+++....++. .....+..+... +
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~Tp-Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~--~ 103 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP-LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA--G 103 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH-HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH--T
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCH-HHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc--c
Confidence 344455677888877777765433221 1 1223 3344567777777666665543221 111111111110 1
Q ss_pred hHHHHHHHHHHHHHcccCCCch---hHHHHHHHHHhcCChHHHHHHHHhcCCC-------------ChhHHHHHHHHHHh
Q 010837 264 TARKALEVHCQLIKNVFFEDVK---LGSALVDMYAKCGKIDDARRVFDHMQQK-------------NVFTWTSMIDGYGK 327 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~~~~~~~l~~~~~~ 327 (499)
. ..........+..++.. -.+ .+...+..|..+-+..+++.-... +....+.|..+ +.
T Consensus 104 ~----~~~~~~~~~~~~~~~~~d~~g~t-~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A-~~ 177 (337)
T 4g8k_A 104 S----VKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA-AE 177 (337)
T ss_dssp C----HHHHHHHHTTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHH-HH
T ss_pred c----chhhHHhhhccchhhhhccCCCC-HHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHH-HH
Confidence 1 11222233333333221 122 233445667777776666543221 11112233333 45
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH---HHHHHHHH--HHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhc
Q 010837 328 NGNPNQALELFCMMQECCVQPNY---VTFLGALS--ACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRA 399 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~ 399 (499)
.|+.+-+..+++ +.|..++. ...+.+.. .....+..+...+++ . +.|..++ ..-.+. +...+..
T Consensus 178 ~g~~~~v~~LL~---~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lL---l-~~gad~n~~d~~g~t~-L~~a~~~ 249 (337)
T 4g8k_A 178 KGHVEVLKILLD---EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL---L-DHGADVNVRGERGKTP-LILAVEK 249 (337)
T ss_dssp HTCHHHHHHHHH---HSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHH---H-HTTCCTTCCCGGGCCH-HHHHHHT
T ss_pred CCCHHHHHHHHh---ccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHH---H-HCCCCCCCcCCCCCCH-HHHHHHh
Confidence 566654444433 23443322 11112222 223444455444443 3 3355443 222233 3345677
Q ss_pred CCHHHHHHHHHhCCC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 400 GSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
|..+.+..+++.-.. ..|..-.+.|. ..++.|+.+ +.+.+++.|..++..+ .+..-++.|+.+ +.
T Consensus 250 ~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv 317 (337)
T 4g8k_A 250 KHLGLVQRLLEQEHIEINDTDSDGKTALL-LAVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LV 317 (337)
T ss_dssp TCHHHHHHHHTSTTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HH
T ss_pred hhhHHHHHHHHhcCCcccCcCCCCCCHHH-HHHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HH
Confidence 888888777764322 12222222333 334567765 4455567777665443 233344566654 45
Q ss_pred HHHHhCCCccC
Q 010837 477 EKMKLRGVLKD 487 (499)
Q Consensus 477 ~~~~~~~~~~~ 487 (499)
+.+.+.|-.+|
T Consensus 318 ~~Ll~~GA~~d 328 (337)
T 4g8k_A 318 KVLLSHGAKED 328 (337)
T ss_dssp HHHHHTTCCC-
T ss_pred HHHHHCcCCCC
Confidence 56677887766
No 344
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.28 E-value=2.7e+02 Score=24.54 Aligned_cols=175 Identities=11% Similarity=-0.025 Sum_probs=79.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-------------------
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQKNV-FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY------------------- 350 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~------------------- 350 (499)
+...+..|+.+-+.-+++.-...+. ..++.| ...+..|+.+-+..+++.....|..++.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPI-HLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH 135 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH-HHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHH-HHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Confidence 3344555666666655554433222 122222 2234556666665555554443433332
Q ss_pred -HHHHHHHHHHcccC--cHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCC
Q 010837 351 -VTFLGALSACGHAG--LVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPN 417 (499)
Q Consensus 351 -~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~ 417 (499)
...+.|..+ +..| +.+-+..+++. |..++ ..-.+.| ...+..|+.+-+..+++.... ..+
T Consensus 136 ~~g~t~L~~A-~~~g~~~~~~v~~Ll~~-----ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 208 (364)
T 3ljn_A 136 CKGQTALHWC-VGLGPEYLEMIKILVQL-----GASPTAKDKADETPL-MRAMEFRNREALDLMMDTVPSKSSLRLDYAN 208 (364)
T ss_dssp ESCCCHHHHH-HHSCGGGHHHHHHHHHH-----TCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCC
T ss_pred CCCCCHHHHH-HHcCCchHHHHHHHHHc-----CCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHhcccccccccccccC
Confidence 112233333 3445 55544444433 33332 2222333 334566888777777765332 112
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCch--hHHHHHHHHhcCChHHHHHHHHH
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA--YVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
..-.+.| ...+..|+.+- .+.+++.|..++... -.+-+..-++.|+.+-+.-+++.
T Consensus 209 ~~g~t~L-~~A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 209 KQGNSHL-HWAILINWEDV----AMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TTCCCTT-HHHHTTTCHHH----HHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCcHH-HHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 1212222 23345666653 444455555543221 12233444566777666666654
No 345
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.24 E-value=6.8e+02 Score=26.02 Aligned_cols=124 Identities=10% Similarity=-0.079 Sum_probs=75.2
Q ss_pred HHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHhcChhhHHHH
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEGYSISIETARKA 268 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a 268 (499)
++..+...|..+-|.++...+.. +...-..+..+|...|++++|...|++.-.. +.... ...+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~-----------~~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF-----------AVLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSC-----------GGGHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccc-----------cchhhh
Confidence 66777888888888776666654 5555567888999999999999999987521 11000 000011
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC----CCCh----hHHHHHHHHHHhCC
Q 010837 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ----QKNV----FTWTSMIDGYGKNG 329 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~g 329 (499)
..++..... .......|..++..+-+.+.++.+.++-+... ..|. ..|+.+..+.+..|
T Consensus 884 ~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111110000 01122367888899999999888877665543 2233 36777777766544
No 346
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.03 E-value=1.4e+02 Score=22.00 Aligned_cols=43 Identities=12% Similarity=0.131 Sum_probs=20.5
Q ss_pred HHhhhCCC-ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCC
Q 010837 52 LQHYINSD-TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94 (499)
Q Consensus 52 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (499)
+..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 24 l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 24 LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33333333 44555555555555544444444444445555444
No 347
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=21.46 E-value=4.4e+02 Score=23.54 Aligned_cols=197 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCC--ChhHHHHHHHHHHhCCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQK--NVFTWTSMIDGYGKNGN--PNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
..++.-|...|+.++|...++++..| .......++..-...++ -+.+..++..+. .++-+.......+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhh
Q ss_pred Cc--------HHHHHHHHHHchHhcCCCCC--------------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 010837 364 GL--------VDKGREIFESMERDYSMKPK--------------MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421 (499)
Q Consensus 364 ~~--------~~~a~~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 421 (499)
.+ ++-.-.++.++..+..+.|. ..+...--..+......+...++|..-...-.....
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~~~veel 216 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQPVNHL 216 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCCSSSCHHHH
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCCccHHHH
Q ss_pred ----HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC--ChHHHHHHHHHHHhCCCcc
Q 010837 422 ----AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG--KWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 422 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~ 486 (499)
..++.=|...||.++|.+.++++......+ ..+...+..++-+.+ ..+...+++..+...|+.+
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
No 348
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.35 E-value=2.8e+02 Score=21.17 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 405 ALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 405 a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+.++|..|.. .--+..|......+...|++++|.++++..++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555544 3456677777777888888888888888888877776
No 349
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=21.14 E-value=1.6e+02 Score=24.18 Aligned_cols=80 Identities=20% Similarity=0.278 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCC----------CCCHHHHHHHHHHHhhcC---------CHHHHHHHHHHHHhcCCCC-CCchhHHHHH
Q 010837 402 LEQALKFVLEMPE----------KPNSDVWAALLSSCRLHD---------DVEMANIAANEIFKLNAND-RPGAYVALSN 461 (499)
Q Consensus 402 ~~~a~~~~~~~~~----------~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 461 (499)
.+.|..++..|-- .....-|..+..+|.+.| +.+...++++..++.|.+- -+..|..++.
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 6778888888765 145677888889998877 5667777888888877653 3578888887
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 010837 462 TLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~ 481 (499)
--.-.-+.++..+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 66556688899988888764
No 350
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.08 E-value=2.9e+02 Score=21.30 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=32.2
Q ss_pred hCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HcccCcHHHHHHHHHHchH
Q 010837 327 KNGNPNQALELFCMMQECCVQP--NYVTFLGALS-A-----CGHAGLVDKGREIFESMER 378 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~ 378 (499)
..|++-+|-++|++.-.....+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4477777777777776554344 3445555555 1 2345777777777776654
No 351
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.04 E-value=1e+02 Score=22.88 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=8.2
Q ss_pred HHhcCChHHHHHHHHh
Q 010837 294 YAKCGKIDDARRVFDH 309 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~ 309 (499)
.++.|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3444555555555544
No 352
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.81 E-value=1.6e+02 Score=22.25 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=32.1
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC----CCChHHHHHHHHHHHhCCChh
Q 010837 69 AHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP----QRTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 69 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~ 128 (499)
+.+.+.|+.++..= ..++..+...+..-.|.++++.+. ..+..|--.-+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34555666554433 345555555566667777777663 335555445566666666543
No 353
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=20.27 E-value=1.1e+02 Score=16.11 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=15.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 010837 459 LSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
-+..|...|..++|..+-+.+.
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4566777788888877766665
Done!