Query 010838
Match_columns 499
No_of_seqs 238 out of 1352
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 9.1E-42 2E-46 355.2 29.8 291 1-294 29-361 (362)
2 cd05472 cnd41_like Chloroplast 100.0 1.3E-39 2.7E-44 329.9 31.0 271 3-296 23-299 (299)
3 PLN03146 aspartyl protease fam 100.0 2.9E-39 6.2E-44 343.6 31.0 282 1-298 131-430 (431)
4 KOG1339 Aspartyl protease [Pos 100.0 5.1E-39 1.1E-43 338.7 30.6 286 1-297 94-397 (398)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.2E-38 2.7E-43 327.0 26.2 250 1-297 50-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 2.1E-38 4.6E-43 323.8 26.8 243 21-293 64-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 3.7E-38 8E-43 323.0 27.7 246 22-293 63-325 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 4.1E-38 8.9E-43 321.6 25.9 246 21-293 54-316 (316)
9 PTZ00165 aspartyl protease; Pr 100.0 7.9E-38 1.7E-42 335.6 29.2 248 24-303 182-455 (482)
10 cd05487 renin_like Renin stimu 100.0 1.2E-37 2.5E-42 319.7 27.5 246 21-294 64-326 (326)
11 cd05476 pepsin_A_like_plant Ch 100.0 1.3E-37 2.8E-42 310.3 25.8 224 23-296 31-265 (265)
12 cd05477 gastricsin Gastricsins 100.0 2.4E-37 5.2E-42 316.1 27.9 245 21-294 57-318 (318)
13 cd05488 Proteinase_A_fungi Fun 100.0 3.6E-37 7.8E-42 315.3 26.8 242 21-293 64-320 (320)
14 cd05474 SAP_like SAPs, pepsin- 100.0 6E-37 1.3E-41 308.8 26.0 243 24-294 31-295 (295)
15 cd05485 Cathepsin_D_like Cathe 100.0 8.1E-37 1.7E-41 314.1 27.0 246 21-293 67-329 (329)
16 cd06098 phytepsin Phytepsin, a 100.0 1E-36 2.3E-41 311.6 27.4 235 22-293 66-317 (317)
17 cd05475 nucellin_like Nucellin 100.0 1.5E-36 3.3E-41 304.1 26.3 236 3-296 24-273 (273)
18 cd05473 beta_secretase_like Be 100.0 1.4E-35 3.1E-40 308.8 28.1 272 20-299 52-350 (364)
19 PTZ00147 plasmepsin-1; Provisi 100.0 1.9E-35 4.2E-40 315.0 28.2 244 21-295 193-450 (453)
20 PTZ00013 plasmepsin 4 (PM4); P 100.0 4.6E-35 9.9E-40 311.7 28.9 245 20-295 191-449 (450)
21 PF00026 Asp: Eukaryotic aspar 100.0 7.7E-35 1.7E-39 295.0 20.2 247 21-294 56-317 (317)
22 cd06097 Aspergillopepsin_like 100.0 5E-33 1.1E-37 279.0 22.0 212 21-293 55-278 (278)
23 cd05471 pepsin_like Pepsin-lik 100.0 9.3E-31 2E-35 260.4 25.4 217 20-293 55-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 99.9 1.5E-23 3.3E-28 194.3 15.0 154 138-293 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.7 8.3E-17 1.8E-21 149.9 10.1 115 1-119 38-164 (164)
26 cd05470 pepsin_retropepsin_lik 98.4 1E-06 2.2E-11 75.6 8.1 56 21-80 53-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 95.1 0.15 3.1E-06 45.3 9.1 27 265-291 98-124 (124)
28 TIGR02281 clan_AA_DTGA clan AA 94.5 0.58 1.3E-05 41.4 11.2 37 135-185 8-44 (121)
29 TIGR03698 clan_AA_DTGF clan AA 91.3 0.69 1.5E-05 40.0 6.6 25 265-289 83-107 (107)
30 PF08284 RVP_2: Retroviral asp 84.8 2.5 5.5E-05 38.1 6.2 29 265-293 103-131 (135)
31 PF13650 Asp_protease_2: Aspar 81.9 2.1 4.6E-05 34.5 4.1 29 146-185 3-31 (90)
32 PF11925 DUF3443: Protein of u 80.1 33 0.00071 36.2 12.8 55 28-83 83-149 (370)
33 cd05484 retropepsin_like_LTR_2 77.8 3.7 8.1E-05 33.9 4.4 31 145-186 4-34 (91)
34 PF13975 gag-asp_proteas: gag- 76.8 4 8.7E-05 32.5 4.1 29 146-185 13-41 (72)
35 PF12384 Peptidase_A2B: Ty3 tr 74.1 21 0.00045 33.5 8.4 86 165-281 47-132 (177)
36 cd05483 retropepsin_like_bacte 73.5 5.9 0.00013 32.1 4.5 29 146-185 7-35 (96)
37 cd06094 RP_Saci_like RP_Saci_l 72.2 17 0.00037 30.6 6.8 20 163-182 9-28 (89)
38 KOG0012 DNA damage inducible p 68.4 56 0.0012 34.3 11.0 39 258-296 310-348 (380)
39 cd05483 retropepsin_like_bacte 67.4 9.5 0.00021 30.9 4.4 53 22-82 42-94 (96)
40 PF02160 Peptidase_A3: Caulifl 67.0 16 0.00034 35.4 6.3 53 223-293 65-117 (201)
41 cd06095 RP_RTVL_H_like Retrope 65.1 8.9 0.00019 31.4 3.8 29 146-185 3-31 (86)
42 PF02817 E3_binding: e3 bindin 65.1 3.8 8.3E-05 29.0 1.3 23 362-384 2-24 (39)
43 cd05481 retropepsin_like_LTR_1 65.0 36 0.00078 28.5 7.5 22 165-186 12-33 (93)
44 PF00077 RVP: Retroviral aspar 56.5 12 0.00025 31.2 3.1 26 145-181 9-34 (100)
45 COG0245 IspF 2C-methyl-D-eryth 56.4 19 0.00041 33.5 4.6 44 341-386 87-130 (159)
46 COG3577 Predicted aspartyl pro 56.4 22 0.00048 34.5 5.2 38 134-185 101-138 (215)
47 COG5550 Predicted aspartyl pro 51.1 41 0.00088 30.0 5.6 25 265-289 93-117 (125)
48 PF09680 Tiny_TM_bacill: Prote 46.0 21 0.00045 22.5 2.1 18 472-489 3-20 (24)
49 PF09668 Asp_protease: Asparty 40.4 35 0.00075 30.5 3.6 29 146-185 29-57 (124)
50 PF13650 Asp_protease_2: Aspar 38.2 1.9E+02 0.004 22.7 7.5 50 23-81 40-89 (90)
51 PF02542 YgbB: YgbB family; I 29.5 1.2E+02 0.0026 28.2 5.4 49 342-392 88-136 (157)
52 PF13798 PCYCGC: Protein of un 27.5 25 0.00053 32.7 0.5 49 414-469 33-84 (158)
53 TIGR01732 tiny_TM_bacill conse 26.5 64 0.0014 20.8 2.1 19 473-491 6-24 (26)
54 PF02594 DUF167: Uncharacteris 26.4 45 0.00098 27.1 1.8 21 366-386 43-63 (77)
55 cd00554 MECDP_synthase MECDP_s 23.4 2.1E+02 0.0046 26.5 5.8 43 342-386 87-129 (153)
56 TIGR02281 clan_AA_DTGA clan AA 22.1 1.7E+02 0.0036 25.7 4.8 49 24-81 54-102 (121)
57 TIGR00151 ispF 2C-methyl-D-ery 21.7 1.4E+02 0.003 27.7 4.3 45 341-387 86-130 (155)
58 PF11615 DUF3249: Protein of u 20.6 54 0.0012 24.3 1.1 25 408-432 13-37 (60)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=9.1e-42 Score=355.24 Aligned_cols=291 Identities=23% Similarity=0.418 Sum_probs=225.2
Q ss_pred CCCcccccCCCC-CCC------CC----------CCCCCceEEEE-eCCCceEEEEEEEEEEEeCCcC--c---ccccce
Q 010838 1 MSNTYQALKCNP-DCN------CD----------NDRKECIYERR-YAEMSTSSGVLGVDVISFGNES--E---LVPQRA 57 (499)
Q Consensus 1 ~SsTy~~v~C~~-~C~------C~----------~~~~~C~y~i~-Y~dGss~sG~l~~DtVsigg~s--~---iti~~~ 57 (499)
+||||+.++|++ .|+ |. -.++.|.|... |.+|+.++|.+++|+|+|+... . .+++++
T Consensus 29 ~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~ 108 (362)
T cd05489 29 HSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNF 108 (362)
T ss_pred CcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCE
Confidence 489999999996 362 11 12356999766 7789899999999999997421 1 267899
Q ss_pred EEEEEEeecCCCCCCCCceEEeeCCCCCChHHHHHHcCCCCCcEEEeecCCCCCCceEEECCCCCCC---------Ccee
Q 010838 58 VFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPP---------DMVF 128 (499)
Q Consensus 58 ~FG~~~~~s~~~~~~~~DGILGLG~~~~S~~~qL~~~glI~n~FSl~L~~~~~~~G~I~fGgiD~s~---------~~~~ 128 (499)
.|||+..+........+|||||||++.+|++.||..++.++++||+||.++...+|.|+||+.+..+ .+.+
T Consensus 109 ~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~ 188 (362)
T cd05489 109 VFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSY 188 (362)
T ss_pred EEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccc
Confidence 9999987643222334899999999999999999988776789999998755568999999998643 2333
Q ss_pred eeeCCC--CCCceEEEEeEEEEcCEEeecCCcee----cCCCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCC
Q 010838 129 SHSDPF--RSPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP 202 (499)
Q Consensus 129 ~~~~~~--~~~~w~V~l~~I~Vgg~~l~l~~~~f----~~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~ 202 (499)
+++... ...+|.|++++|+||++.+.+++..+ .+...++|||||++++||+++|++|.++|.+++........
T Consensus 189 tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~- 267 (362)
T cd05489 189 TPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA- 267 (362)
T ss_pred cccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-
Confidence 333221 24799999999999999988765433 24568999999999999999999999999988764332211
Q ss_pred CCCccccccCCCCcCcccccCCCCeEEEEEcC-CeEEEeCCCCceEEeeecCCcEEEEEEEcC---CCCeeecHHhhheE
Q 010838 203 DPNYDDICFSGAGRDVSELSKTFPQVDMVFGN-GQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLLGGIVVRNT 278 (499)
Q Consensus 203 ~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~-g~~i~I~p~dYi~~~~~~~~~~Cl~ii~~~---~~~~ILG~~FLr~~ 278 (499)
.....+.||+.....+......+|+|+|+|++ |.++.|+|++|+++..+ +.+|+++.... .+.||||+.|||++
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~ 345 (362)
T cd05489 268 AAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDN 345 (362)
T ss_pred CCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecce
Confidence 11223789986554443334689999999966 79999999999998753 67999887655 34789999999999
Q ss_pred EEEEECCCCEEEEEec
Q 010838 279 LVTYDRGNDKVGFWKT 294 (499)
Q Consensus 279 yvVFD~en~rIGFA~s 294 (499)
|++||++++|||||++
T Consensus 346 ~vvyD~~~~riGfa~~ 361 (362)
T cd05489 346 LLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEECCCCEeecccC
Confidence 9999999999999975
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.3e-39 Score=329.94 Aligned_cols=271 Identities=28% Similarity=0.529 Sum_probs=210.3
Q ss_pred CcccccCCCCCCCCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeCC
Q 010838 3 NTYQALKCNPDCNCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (499)
Q Consensus 3 sTy~~v~C~~~C~C~~~~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG~ 82 (499)
|+--+|.|.. | |.|.+.|+||+.++|.+++|+|+|++. .+++++.|||+..+++.+. ..|||||||+
T Consensus 23 Ss~~Wv~c~~---c------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~--~~~~~~~Fg~~~~~~~~~~--~~~GilGLg~ 89 (299)
T cd05472 23 SDLTWVQCQP---C------CLYQVSYGDGSYTTGDLATDTLTLGSS--DVVPGFAFGCGHDNEGLFG--GAAGLLGLGR 89 (299)
T ss_pred CCcccccCCC---C------CeeeeEeCCCceEEEEEEEEEEEeCCC--CccCCEEEECCccCCCccC--CCCEEEECCC
Confidence 3445666642 4 999999999998899999999999984 2678999999988766443 6899999999
Q ss_pred CCCChHHHHHHcCCCCCcEEEeecCCC-CCCceEEECCCCCCC-CceeeeeCCC--CCCceEEEEeEEEEcCEEeecCCc
Q 010838 83 GRLSVVDQLVEKGVISDSFSLCYGGMD-VGGGAMVLGGITPPP-DMVFSHSDPF--RSPYYNIELKELRVAGKPLKVSPR 158 (499)
Q Consensus 83 ~~~S~~~qL~~~glI~n~FSl~L~~~~-~~~G~I~fGgiD~s~-~~~~~~~~~~--~~~~w~V~l~~I~Vgg~~l~l~~~ 158 (499)
..++++.||..+ .+++||+||.+.. ...|+|+|||+|++. ++.++++... ...+|.|++++|.||++.+..++.
T Consensus 90 ~~~s~~~ql~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~ 167 (299)
T cd05472 90 GKLSLPSQTASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPA 167 (299)
T ss_pred CcchHHHHhhHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCcc
Confidence 999999998775 4589999998754 457999999999972 2333332221 236899999999999998876432
Q ss_pred eecCCCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEE
Q 010838 159 IFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKL 238 (499)
Q Consensus 159 ~f~~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i 238 (499)
.. .+..++|||||++++||+++|++|.+++.++....... ........|++.. +.. ...+|+|+|+|+++.++
T Consensus 168 ~~-~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~C~~~~---~~~-~~~~P~i~f~f~~g~~~ 240 (299)
T cd05472 168 SF-GAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRA--PGFSILDTCYDLS---GFR-SVSVPTVSLHFQGGADV 240 (299)
T ss_pred cc-CCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCC--CCCCCCCccCcCC---CCc-CCccCCEEEEECCCCEE
Confidence 21 34589999999999999999999999998765432111 1111233587532 211 24899999999658999
Q ss_pred EeCCCCceEEeeecCCcEEEEEEEcC--CCCeeecHHhhheEEEEEECCCCEEEEEeccC
Q 010838 239 TLSPENYLFRHMKVSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (499)
Q Consensus 239 ~I~p~dYi~~~~~~~~~~Cl~ii~~~--~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C 296 (499)
.|+|++|++... ..+..|+++.... .+.+|||+.|||++|+|||++++|||||+.+|
T Consensus 241 ~l~~~~y~~~~~-~~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 241 ELDASGVLYPVD-DSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EeCcccEEEEec-CCCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 999999998432 2467999877653 46799999999999999999999999999999
No 3
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=343.62 Aligned_cols=282 Identities=25% Similarity=0.491 Sum_probs=223.0
Q ss_pred CCCcccccCCCC-CCC-------CCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcC--cccccceEEEEEEeecCCCC
Q 010838 1 MSNTYQALKCNP-DCN-------CDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDLY 70 (499)
Q Consensus 1 ~SsTy~~v~C~~-~C~-------C~~~~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s--~iti~~~~FG~~~~~s~~~~ 70 (499)
+||||+.++|++ .|. |.. ++.|.|.+.|+||+.+.|.+++|+|+|++.. ..+++++.|||++...+.+.
T Consensus 131 ~SST~~~~~C~s~~C~~~~~~~~c~~-~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~ 209 (431)
T PLN03146 131 KSSTYKDVSCDSSQCQALGNQASCSD-ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD 209 (431)
T ss_pred CCCCCcccCCCCcccccCCCCCCCCC-CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc
Confidence 599999999996 473 654 3579999999999988999999999998742 24678999999988776543
Q ss_pred CCCCceEEeeCCCCCChHHHHHHcCCCCCcEEEeecCCC---CCCceEEECCCCCCC--CceeeeeCCC-CCCceEEEEe
Q 010838 71 TQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMD---VGGGAMVLGGITPPP--DMVFSHSDPF-RSPYYNIELK 144 (499)
Q Consensus 71 ~~~~DGILGLG~~~~S~~~qL~~~glI~n~FSl~L~~~~---~~~G~I~fGgiD~s~--~~~~~~~~~~-~~~~w~V~l~ 144 (499)
...+||||||++.+|+++||... +.++||+||.+.. ...|.|+||+..... ...++++... ...+|.|+|+
T Consensus 210 -~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~ 286 (431)
T PLN03146 210 -EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLE 286 (431)
T ss_pred -CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEE
Confidence 35799999999999999999763 5679999997532 347999999953322 2344443221 2468999999
Q ss_pred EEEEcCEEeecCCceec--CCCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCccccc
Q 010838 145 ELRVAGKPLKVSPRIFD--GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELS 222 (499)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~--~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 222 (499)
+|.||++.+.++...|. +...+||||||++++||+++|++|.++|.+++..... .. .....+.||+... .
T Consensus 287 gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~-~~-~~~~~~~C~~~~~----~-- 358 (431)
T PLN03146 287 AISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERV-SD-PQGLLSLCYSSTS----D-- 358 (431)
T ss_pred EEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccC-CC-CCCCCCccccCCC----C--
Confidence 99999999887765542 3457999999999999999999999999888753211 11 1123578986321 1
Q ss_pred CCCCeEEEEEcCCeEEEeCCCCceEEeeecCCcEEEEEEEcCCCCeeecHHhhheEEEEEECCCCEEEEEeccCCc
Q 010838 223 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSE 298 (499)
Q Consensus 223 ~~~P~Itf~f~~g~~i~I~p~dYi~~~~~~~~~~Cl~ii~~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C~~ 298 (499)
..+|+|+|+| +|..+.|+|++|++.... +.+|+++... .+.+|||+.|||++|++||++++||||++.+|+.
T Consensus 359 ~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~-~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 359 IKLPIITAHF-TGADVKLQPLNTFVKVSE--DLVCFAMIPT-SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCCCeEEEEE-CCCeeecCcceeEEEcCC--CcEEEEEecC-CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 3799999999 689999999999987653 6789987754 4579999999999999999999999999999975
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-39 Score=338.70 Aligned_cols=286 Identities=34% Similarity=0.651 Sum_probs=234.2
Q ss_pred CCCcccccCCCCC-C----CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCC-CCC
Q 010838 1 MSNTYQALKCNPD-C----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRA 74 (499)
Q Consensus 1 ~SsTy~~v~C~~~-C----~C~~~~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~-~~~ 74 (499)
+||||+.+.|++. | .|..++..|+|++.|+||++++|.+++|+|++++...+..+++.|||+..+.+.+.. ...
T Consensus 94 ~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~~~~~~~~ 173 (398)
T KOG1339|consen 94 ASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGSFGLFAAF 173 (398)
T ss_pred ccccccccCCCCccccccccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCcccccccccc
Confidence 5999999999974 5 234457899999999998889999999999999853357778999999999876222 568
Q ss_pred ceEEeeCCCCCChHHHHHHcCCCCCcEEEeecCCCC---CCceEEECCCCCCCCce-eeeeCCCCCC--ceEEEEeEEEE
Q 010838 75 DGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGGMDV---GGGAMVLGGITPPPDMV-FSHSDPFRSP--YYNIELKELRV 148 (499)
Q Consensus 75 DGILGLG~~~~S~~~qL~~~glI~n~FSl~L~~~~~---~~G~I~fGgiD~s~~~~-~~~~~~~~~~--~w~V~l~~I~V 148 (499)
|||||||+..++++.|+...+...++||+||.+.+. .+|.|+||+.|+.+... +.+.+..... +|.|++++|.|
T Consensus 174 dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~v 253 (398)
T KOG1339|consen 174 DGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISV 253 (398)
T ss_pred ceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEE
Confidence 999999999999999999988777899999998653 48999999999997433 4444334444 99999999999
Q ss_pred cCEEeecCCceecC-CCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCe
Q 010838 149 AGKPLKVSPRIFDG-GHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQ 227 (499)
Q Consensus 149 gg~~l~l~~~~f~~-~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~ 227 (499)
+++. .++...+.. ..++++||||++++||+++|++|.++|.+++. . ......+...|+...... ..+|.
T Consensus 254 gg~~-~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~---~~~~~~~~~~C~~~~~~~-----~~~P~ 323 (398)
T KOG1339|consen 254 GGKR-PIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V---VGTDGEYFVPCFSISTSG-----VKLPD 323 (398)
T ss_pred CCcc-CCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c---cccCCceeeecccCCCCc-----ccCCc
Confidence 9987 666666655 48899999999999999999999999988751 0 123445677998654322 36999
Q ss_pred EEEEEcCCeEEEeCCCCceEEeeecCCcEEEEEEEcCC--CCeeecHHhhheEEEEEECC-CCEEEEEe--ccCC
Q 010838 228 VDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD--STTLLGGIVVRNTLVTYDRG-NDKVGFWK--TNCS 297 (499)
Q Consensus 228 Itf~f~~g~~i~I~p~dYi~~~~~~~~~~Cl~ii~~~~--~~~ILG~~FLr~~yvVFD~e-n~rIGFA~--s~C~ 297 (499)
|+|+|++|+.+.+++++|++........ |++.+...+ ..||||+.||++++++||.. ++||||++ ..|.
T Consensus 324 i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 324 ITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999955999999999999998652222 999999873 48999999999999999999 99999999 6664
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.2e-38 Score=327.05 Aligned_cols=250 Identities=28% Similarity=0.508 Sum_probs=198.9
Q ss_pred CCCcccccCCCC-CC----CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcCc----ccccceEEEEEEeecCCCCC
Q 010838 1 MSNTYQALKCNP-DC----NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNESE----LVPQRAVFGCENLETGDLYT 71 (499)
Q Consensus 1 ~SsTy~~v~C~~-~C----~C~~~~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~----iti~~~~FG~~~~~s~~~~~ 71 (499)
+|+||+.++|.. .| .|. ++.|+|++.|++|+.+.|.+++|+|+|++... ....++.|||+..+.+.+..
T Consensus 50 ~Sst~~~~~C~~~~c~~~~~~~--~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~ 127 (326)
T cd06096 50 NSITSSILYCDCNKCCYCLSCL--NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLT 127 (326)
T ss_pred cccccccccCCCccccccCcCC--CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccc
Confidence 489999999986 35 343 46799999999998889999999999997531 01235789999988877766
Q ss_pred CCCceEEeeCCCCC----ChHHHHHHcCCCC---CcEEEeecCCCCCCceEEECCCCCCCC-----------ceeeeeCC
Q 010838 72 QRADGIMGLGRGRL----SVVDQLVEKGVIS---DSFSLCYGGMDVGGGAMVLGGITPPPD-----------MVFSHSDP 133 (499)
Q Consensus 72 ~~~DGILGLG~~~~----S~~~qL~~~glI~---n~FSl~L~~~~~~~G~I~fGgiD~s~~-----------~~~~~~~~ 133 (499)
...|||||||+... +...+|.+++.+. ++||+||.+ .+|.|+|||+|+.+. ..+.|.+.
T Consensus 128 ~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~---~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~ 204 (326)
T cd06096 128 QQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSE---DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPI 204 (326)
T ss_pred cccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcC---CCeEEEECccChhhhcccccccccccCCceEEec
Confidence 77899999999764 3445566776653 789999986 369999999998752 24445444
Q ss_pred CCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCC
Q 010838 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSG 213 (499)
Q Consensus 134 ~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~ 213 (499)
....+|.|++++|.|+++.... ....+..++|||||++++||+++|++|.+++
T Consensus 205 ~~~~~y~v~l~~i~vg~~~~~~---~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------ 257 (326)
T cd06096 205 TRKYYYYVKLEGLSVYGTTSNS---GNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------ 257 (326)
T ss_pred cCCceEEEEEEEEEEcccccce---ecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------
Confidence 4568999999999999986111 0124568999999999999999999987553
Q ss_pred CCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEeeecCCcEEEEEEEcCCCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 214 ~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~~~~~~~Cl~ii~~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
|+|+|.|++|++++|+|++|++.... ..|...+...++.+|||++|||++|+|||++++|||||+
T Consensus 258 ------------P~i~~~f~~g~~~~i~p~~y~~~~~~---~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~ 322 (326)
T cd06096 258 ------------PTITIIFENNLKIDWKPSSYLYKKES---FWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVE 322 (326)
T ss_pred ------------CcEEEEEcCCcEEEECHHHhccccCC---ceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEc
Confidence 88999996589999999999987642 335555555567899999999999999999999999999
Q ss_pred ccCC
Q 010838 294 TNCS 297 (499)
Q Consensus 294 s~C~ 297 (499)
++|.
T Consensus 323 ~~C~ 326 (326)
T cd06096 323 SNCP 326 (326)
T ss_pred CCCC
Confidence 9994
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.1e-38 Score=323.83 Aligned_cols=243 Identities=24% Similarity=0.475 Sum_probs=201.7
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCC-CCCceEEeeCCCCC------ChHHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL------SVVDQLVE 93 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~-~~~DGILGLG~~~~------S~~~qL~~ 93 (499)
..|+|++.|++|+ ++|.+++|+|++++ ++++++.|||++.+.+.+.. ...|||||||++.+ +++++|++
T Consensus 64 ~~~~~~~~yg~gs-~~G~~~~D~v~ig~---~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 139 (317)
T cd05478 64 TGQPLSIQYGTGS-MTGILGYDTVQVGG---ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMS 139 (317)
T ss_pred CCcEEEEEECCce-EEEEEeeeEEEECC---EEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHh
Confidence 3689999999997 69999999999998 57889999999887765443 35799999998754 58999999
Q ss_pred cCCCC-CcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEccC
Q 010838 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDSG 171 (499)
+|+|+ +.||+||.+.+..+|+|+|||+|+++ ...+.|++.....+|.|.++++.||++.+... .+..++||||
T Consensus 140 ~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~-----~~~~~iiDTG 214 (317)
T cd05478 140 QGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACS-----GGCQAIVDTG 214 (317)
T ss_pred CCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccC-----CCCEEEECCC
Confidence 99998 89999999866567999999999886 44555655556789999999999999987532 3458999999
Q ss_pred CceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEeee
Q 010838 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (499)
Q Consensus 172 Ts~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~~ 251 (499)
|+++++|++++++|++++..... ....+..+|. .. ..+|.|+|+| +|+.+.|+|++|+.+.
T Consensus 215 ts~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~~~f~f-~g~~~~i~~~~y~~~~-- 275 (317)
T cd05478 215 TSLLVGPSSDIANIQSDIGASQN-------QNGEMVVNCS--------SI-SSMPDVVFTI-NGVQYPLPPSAYILQD-- 275 (317)
T ss_pred chhhhCCHHHHHHHHHHhCCccc-------cCCcEEeCCc--------Cc-ccCCcEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999998854321 1123344664 22 3789999999 8999999999999765
Q ss_pred cCCcEEEEEEEcC--CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 252 VSGAYCLGIFQNS--DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 252 ~~~~~Cl~ii~~~--~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
..+|++.++.. .+.||||++|||++|+|||++++||||||
T Consensus 276 --~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 --QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 56999888775 46799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.7e-38 Score=322.98 Aligned_cols=246 Identities=24% Similarity=0.422 Sum_probs=198.9
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCC------ChHHHHHHc
Q 010838 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVEK 94 (499)
Q Consensus 22 ~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~------S~~~qL~~~ 94 (499)
.|+|.+.|++|+ ++|.+++|+|++++ .++.++.|||+.++++. +.....|||||||++.. +++++|+++
T Consensus 63 ~~~~~i~Yg~G~-~~G~~~~D~v~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~ 138 (325)
T cd05490 63 GTEFAIQYGSGS-LSGYLSQDTVSIGG---LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQ 138 (325)
T ss_pred CcEEEEEECCcE-EEEEEeeeEEEECC---EEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhc
Confidence 689999999996 69999999999998 57889999999887764 44456899999999754 578999999
Q ss_pred CCCC-CcEEEeecCCC--CCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEcc
Q 010838 95 GVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (499)
Q Consensus 95 glI~-n~FSl~L~~~~--~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDS 170 (499)
|+|+ +.||+||.++. ..+|+|+|||+|+++ ...+.|.+.....+|.|++++|.||++.... .....++|||
T Consensus 139 g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~-----~~~~~aiiDS 213 (325)
T cd05490 139 KLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLC-----KGGCEAIVDT 213 (325)
T ss_pred CCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeec-----CCCCEEEECC
Confidence 9998 89999998643 246999999999987 3455555555678999999999999874321 2345899999
Q ss_pred CCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEee
Q 010838 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (499)
Q Consensus 171 GTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~ 250 (499)
||+++++|++++++|.+++.+. . .....+..+|.. . ..+|+|+|+| +|+.+.|+|++|+++..
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~----~---~~~~~~~~~C~~--------~-~~~P~i~f~f-gg~~~~l~~~~y~~~~~ 276 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAV----P---LIQGEYMIDCEK--------I-PTLPVISFSL-GGKVYPLTGEDYILKVS 276 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCc----c---ccCCCEEecccc--------c-ccCCCEEEEE-CCEEEEEChHHeEEecc
Confidence 9999999999999999988431 1 112234556642 2 4799999999 89999999999999865
Q ss_pred ecCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 251 KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 251 ~~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
......|++.+... .+.||||++|||++|+|||++++|||||+
T Consensus 277 ~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 277 QRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 43456899876541 45799999999999999999999999985
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.1e-38 Score=321.57 Aligned_cols=246 Identities=25% Similarity=0.469 Sum_probs=199.8
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCC------ChHHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~------S~~~qL~~ 93 (499)
..|+|++.|++|+ ++|.+++|+|+|++ ++++++.|||+..+.+. +.....|||||||++.+ +++++|++
T Consensus 54 ~~~~~~i~Yg~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~ 129 (316)
T cd05486 54 NGEAFSIQYGTGS-LTGIIGIDQVTVEG---ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMA 129 (316)
T ss_pred CCcEEEEEeCCcE-EEEEeeecEEEECC---EEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHh
Confidence 4799999999995 79999999999998 57889999999877654 44557899999999765 47899999
Q ss_pred cCCCC-CcEEEeecCCC--CCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEc
Q 010838 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~--~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivD 169 (499)
+|+|+ ++||+||.+.. ...|+|+|||+|+++ ...+.|.+.....+|.|++++|.|+++.+... .+..++||
T Consensus 130 qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~-----~~~~aiiD 204 (316)
T cd05486 130 QNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCS-----DGCQAIVD 204 (316)
T ss_pred cCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecC-----CCCEEEEC
Confidence 99998 88999998642 347999999999986 44556655566789999999999999876432 34589999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 010838 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (499)
Q Consensus 170 SGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~ 249 (499)
|||+++++|++++++|.+++... ..+..|..+|. .. +.+|+|+|+| +|+.++|+|++|++..
T Consensus 205 TGTs~~~lP~~~~~~l~~~~~~~--------~~~~~~~~~C~--------~~-~~~p~i~f~f-~g~~~~l~~~~y~~~~ 266 (316)
T cd05486 205 TGTSLITGPSGDIKQLQNYIGAT--------ATDGEYGVDCS--------TL-SLMPSVTFTI-NGIPYSLSPQAYTLED 266 (316)
T ss_pred CCcchhhcCHHHHHHHHHHhCCc--------ccCCcEEEecc--------cc-ccCCCEEEEE-CCEEEEeCHHHeEEec
Confidence 99999999999999998877432 11223445663 22 4799999999 8999999999999875
Q ss_pred eecCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 250 ~~~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
....+..|++.++.. .+.||||++|||++|+|||.+++|||||+
T Consensus 267 ~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 267 QSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 333457899877542 35799999999999999999999999996
No 9
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.9e-38 Score=335.60 Aligned_cols=248 Identities=19% Similarity=0.309 Sum_probs=202.9
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCC---------ChHHHHHH
Q 010838 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQLVE 93 (499)
Q Consensus 24 ~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~---------S~~~qL~~ 93 (499)
.+.++|++|+ .+|.+++|+|++++ ++++++.||+++.+++. +....+|||||||++.+ +++++|++
T Consensus 182 ~~~i~YGsGs-~~G~l~~DtV~ig~---l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~ 257 (482)
T PTZ00165 182 ETYIQYGTGE-CVLALGKDTVKIGG---LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKK 257 (482)
T ss_pred eEEEEeCCCc-EEEEEEEEEEEECC---EEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHH
Confidence 5779999996 58999999999998 68899999999987664 55567899999999763 58999999
Q ss_pred cCCCC-CcEEEeecCCCCCCceEEECCCCCCCC---ceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEc
Q 010838 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPPD---MVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~~---~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivD 169 (499)
||+|+ ++||+||.++...+|+|+|||+|+.+. ..+.|++.....+|.|.+++|.||++.+... ..+..+++|
T Consensus 258 qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~----~~~~~aIiD 333 (482)
T PTZ00165 258 QNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFC----DRKCKAAID 333 (482)
T ss_pred cCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeec----CCceEEEEc
Confidence 99998 899999987656689999999998652 3566766667889999999999999877653 235689999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcC--C--eEEEeCCCCc
Q 010838 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN--G--QKLTLSPENY 245 (499)
Q Consensus 170 SGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~--g--~~i~I~p~dY 245 (499)
|||+++++|++++++|.+++.. ..+|. .. +.+|+|+|+|++ | +++.|+|++|
T Consensus 334 TGTSli~lP~~~~~~i~~~i~~---------------~~~C~--------~~-~~lP~itf~f~g~~g~~v~~~l~p~dY 389 (482)
T PTZ00165 334 TGSSLITGPSSVINPLLEKIPL---------------EEDCS--------NK-DSLPRISFVLEDVNGRKIKFDMDPEDY 389 (482)
T ss_pred CCCccEeCCHHHHHHHHHHcCC---------------ccccc--------cc-ccCCceEEEECCCCCceEEEEEchHHe
Confidence 9999999999999999988731 12564 22 479999999942 1 4899999999
Q ss_pred eEEee--ecCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEeccCCcccccc
Q 010838 246 LFRHM--KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELWRRL 303 (499)
Q Consensus 246 i~~~~--~~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C~~~~~~~ 303 (499)
+++.. ...+..|+..+... ++.||||++|||+||+|||++|+|||||+++|.......
T Consensus 390 i~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~~~~~ 455 (482)
T PTZ00165 390 VIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQSGPNF 455 (482)
T ss_pred eeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCCCCcE
Confidence 99752 23457998766642 357999999999999999999999999999987654433
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=1.2e-37 Score=319.73 Aligned_cols=246 Identities=24% Similarity=0.460 Sum_probs=200.9
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecC-CCCCCCCceEEeeCCCCC------ChHHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG-DLYTQRADGIMGLGRGRL------SVVDQLVE 93 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~-~~~~~~~DGILGLG~~~~------S~~~qL~~ 93 (499)
..|.|++.|++|+ ++|.+++|+|++++. .+ ++.||++..... .+.....|||||||++.. +++++|++
T Consensus 64 ~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~---~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 64 NGTEFTIHYASGT-VKGFLSQDIVTVGGI---PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CCEEEEEEeCCce-EEEEEeeeEEEECCE---Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 4799999999996 799999999999984 44 478999987543 233456899999999754 57899999
Q ss_pred cCCCC-CcEEEeecCCC--CCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEc
Q 010838 94 KGVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~--~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivD 169 (499)
||+|+ ++||+||.+.. ...|+|+|||+|+++ ...+.+++.....+|.|+++++.|+++.+... .+..++||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~-----~~~~aiiD 213 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCE-----DGCTAVVD 213 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecC-----CCCEEEEC
Confidence 99998 89999998753 357999999999987 45566666667789999999999999876432 34579999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 010838 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (499)
Q Consensus 170 SGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~ 249 (499)
|||+++++|++++++|++++.+... ...|..+|.. . ..+|+|+|+| ++..++|++++|+++.
T Consensus 214 SGts~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~--------~-~~~P~i~f~f-gg~~~~v~~~~yi~~~ 275 (326)
T cd05487 214 TGASFISGPTSSISKLMEALGAKER--------LGDYVVKCNE--------V-PTLPDISFHL-GGKEYTLSSSDYVLQD 275 (326)
T ss_pred CCccchhCcHHHHHHHHHHhCCccc--------CCCEEEeccc--------c-CCCCCEEEEE-CCEEEEeCHHHhEEec
Confidence 9999999999999999998843211 2234556642 2 4789999999 8999999999999987
Q ss_pred eecCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEec
Q 010838 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (499)
Q Consensus 250 ~~~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~s 294 (499)
.+..+..|+..++.. .+.||||++|||++|+|||++++|||||++
T Consensus 276 ~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 276 SDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred cCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 654567999877642 357999999999999999999999999985
No 11
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-37 Score=310.34 Aligned_cols=224 Identities=38% Similarity=0.701 Sum_probs=189.9
Q ss_pred ceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeCCCCCChHHHHHHcCCCCCcEE
Q 010838 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRLSVVDQLVEKGVISDSFS 102 (499)
Q Consensus 23 C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG~~~~S~~~qL~~~glI~n~FS 102 (499)
|.|.+.|+||+.++|.+++|+|+|++.. .+++++.|||+..+++ +.....+||||||+...|+++||..++ ++||
T Consensus 31 ~~~~~~Y~dg~~~~G~~~~D~v~~g~~~-~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs 105 (265)
T cd05476 31 CSYEYSYGDGSSTSGVLATETFTFGDSS-VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFS 105 (265)
T ss_pred CceEeEeCCCceeeeeEEEEEEEecCCC-CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeE
Confidence 8899999999999999999999999842 2678999999998876 556678999999999999999999887 8999
Q ss_pred EeecCC--CCCCceEEECCCCCCC--CceeeeeCCC--CCCceEEEEeEEEEcCEEeecCCce----ecCCCcEEEccCC
Q 010838 103 LCYGGM--DVGGGAMVLGGITPPP--DMVFSHSDPF--RSPYYNIELKELRVAGKPLKVSPRI----FDGGHGTVLDSGT 172 (499)
Q Consensus 103 l~L~~~--~~~~G~I~fGgiD~s~--~~~~~~~~~~--~~~~w~V~l~~I~Vgg~~l~l~~~~----f~~~~~aivDSGT 172 (499)
+||.+. +..+|+|+|||+|+.+ ...++++... ...+|.|++++|.|+++.+.++... ......++|||||
T Consensus 106 ~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGT 185 (265)
T cd05476 106 YCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGT 185 (265)
T ss_pred EEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCC
Confidence 999874 3568999999999974 3344443322 2579999999999999988654321 1245689999999
Q ss_pred ceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEeeec
Q 010838 173 TYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKV 252 (499)
Q Consensus 173 s~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~~~ 252 (499)
++++||+++| |+|+|.|++++++.+++++|+....
T Consensus 186 s~~~lp~~~~-------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-- 220 (265)
T cd05476 186 TLTYLPDPAY-------------------------------------------PDLTLHFDGGADLELPPENYFVDVG-- 220 (265)
T ss_pred cceEcCcccc-------------------------------------------CCEEEEECCCCEEEeCcccEEEECC--
Confidence 9999999876 7899999559999999999998543
Q ss_pred CCcEEEEEEEcC-CCCeeecHHhhheEEEEEECCCCEEEEEeccC
Q 010838 253 SGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (499)
Q Consensus 253 ~~~~Cl~ii~~~-~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C 296 (499)
.+.+|++++... .+.+|||++|||++|++||++++|||||+++|
T Consensus 221 ~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 221 EGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 367999988774 77899999999999999999999999999999
No 12
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.4e-37 Score=316.08 Aligned_cols=245 Identities=21% Similarity=0.453 Sum_probs=198.9
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCC------CChHHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR------LSVVDQLVE 93 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~------~S~~~qL~~ 93 (499)
..|+|++.|++|+ ++|.+++|+|++++ .+++++.|||++...+. +.....|||||||++. .+++++|++
T Consensus 57 ~~~~~~~~Yg~Gs-~~G~~~~D~i~~g~---~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~ 132 (318)
T cd05477 57 NGETFSLQYGSGS-LTGIFGYDTVTVQG---IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQ 132 (318)
T ss_pred CCcEEEEEECCcE-EEEEEEeeEEEECC---EEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHh
Confidence 4699999999996 69999999999998 57789999999887653 3344679999999853 479999999
Q ss_pred cCCCC-CcEEEeecCCC-CCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEcc
Q 010838 94 KGVIS-DSFSLCYGGMD-VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~-~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDS 170 (499)
+|+|+ ++||+||.++. ..+|.|+|||+|+++ ...+.|++.....+|.|++++|.|+++.+.+. ..+..++|||
T Consensus 133 ~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~----~~~~~~iiDS 208 (318)
T cd05477 133 QNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWC----SQGCQAIVDT 208 (318)
T ss_pred cCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEeccc----CCCceeeECC
Confidence 99998 89999998742 346999999999887 34455555556789999999999999887542 2345799999
Q ss_pred CCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEee
Q 010838 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (499)
Q Consensus 171 GTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~ 250 (499)
||+++++|++++++|++++..+.. ....+..+|. .. +.+|+|+|+| +|+++.|+|++|+...
T Consensus 209 Gtt~~~lP~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~p~l~~~f-~g~~~~v~~~~y~~~~- 270 (318)
T cd05477 209 GTSLLTAPQQVMSTLMQSIGAQQD-------QYGQYVVNCN--------NI-QNLPTLTFTI-NGVSFPLPPSAYILQN- 270 (318)
T ss_pred CCccEECCHHHHHHHHHHhCCccc-------cCCCEEEeCC--------cc-ccCCcEEEEE-CCEEEEECHHHeEecC-
Confidence 999999999999999998855432 1123445564 22 4789999999 8899999999999874
Q ss_pred ecCCcEEEEEEEcC-------CCCeeecHHhhheEEEEEECCCCEEEEEec
Q 010838 251 KVSGAYCLGIFQNS-------DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (499)
Q Consensus 251 ~~~~~~Cl~ii~~~-------~~~~ILG~~FLr~~yvVFD~en~rIGFA~s 294 (499)
..+|+..+... .+.||||++|||++|++||++++|||||++
T Consensus 271 ---~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 271 ---NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ---CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 45898666431 246999999999999999999999999985
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.6e-37 Score=315.29 Aligned_cols=242 Identities=23% Similarity=0.454 Sum_probs=197.4
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCC------ChHHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVE 93 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~------S~~~qL~~ 93 (499)
..|.|++.|++|+ ++|.+++|+|++++ ++++++.|||+.++.+. +.....|||||||++.. +.+.+|++
T Consensus 64 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~ 139 (320)
T cd05488 64 NGTEFKIQYGSGS-LEGFVSQDTLSIGD---LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMIN 139 (320)
T ss_pred CCCEEEEEECCce-EEEEEEEeEEEECC---EEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHh
Confidence 4799999999996 69999999999998 57789999999877654 33446799999999765 35678999
Q ss_pred cCCCC-CcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEccC
Q 010838 94 KGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSG 171 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDSG 171 (499)
+|+|+ +.||+||.+....+|.|+|||+|+.+ ...+.|++.....+|.|++++|.||++.+..+ +..++||||
T Consensus 140 qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~------~~~~ivDSG 213 (320)
T cd05488 140 QGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELE------NTGAAIDTG 213 (320)
T ss_pred cCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccC------CCeEEEcCC
Confidence 99997 89999999865568999999999876 34455555556789999999999999877542 347999999
Q ss_pred CceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEeee
Q 010838 172 TTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK 251 (499)
Q Consensus 172 Ts~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~~ 251 (499)
|+++++|++++++|.+++.+... ....|..+|. .. ..+|+|+|+| +|+++.|+|++|++..
T Consensus 214 tt~~~lp~~~~~~l~~~~~~~~~-------~~~~~~~~C~--------~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~-- 274 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGAKKS-------WNGQYTVDCS--------KV-DSLPDLTFNF-DGYNFTLGPFDYTLEV-- 274 (320)
T ss_pred cccccCCHHHHHHHHHHhCCccc-------cCCcEEeecc--------cc-ccCCCEEEEE-CCEEEEECHHHheecC--
Confidence 99999999999999988743211 1223444564 22 4799999999 7999999999999754
Q ss_pred cCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 252 VSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 252 ~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
...|++.+... .+.||||++|||++|+|||++++|||||+
T Consensus 275 --~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 --SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred --CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 45899888753 34799999999999999999999999985
No 14
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6e-37 Score=308.77 Aligned_cols=243 Identities=20% Similarity=0.354 Sum_probs=197.7
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeCCCCC-----------ChHHHHH
Q 010838 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGRL-----------SVVDQLV 92 (499)
Q Consensus 24 ~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG~~~~-----------S~~~qL~ 92 (499)
+|++.|++|++++|.+++|+|++++. ++.++.|||+++.. ..|||||||++.. +++++|+
T Consensus 31 ~~~~~Y~~g~~~~G~~~~D~v~~g~~---~~~~~~fg~~~~~~------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 31 DFSISYGDGTSASGTWGTDTVSIGGA---TVKNLQFAVANSTS------SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred eeEEEeccCCcEEEEEEEEEEEECCe---EecceEEEEEecCC------CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 69999999888999999999999984 67899999998742 4799999999775 6999999
Q ss_pred HcCCCC-CcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCCC------CceEEEEeEEEEcCEEeecCCceecCCC
Q 010838 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRS------PYYNIELKELRVAGKPLKVSPRIFDGGH 164 (499)
Q Consensus 93 ~~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~~------~~w~V~l~~I~Vgg~~l~l~~~~f~~~~ 164 (499)
++|+|+ +.||+||.+.+..+|.|+|||+|+.+ .....|.+.... .+|.|++++|.++++.+..+ ......
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~--~~~~~~ 179 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTT--LLSKNL 179 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccc--ccCCCc
Confidence 999998 89999999865568999999999876 233344333222 78999999999999876532 123567
Q ss_pred cEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCC
Q 010838 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPEN 244 (499)
Q Consensus 165 ~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~d 244 (499)
.++|||||++++||++++++|.+++.+.... ....+..+|+. . .. |+|+|+| +|.++.|++++
T Consensus 180 ~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~------~~~~~~~~C~~--------~-~~-p~i~f~f-~g~~~~i~~~~ 242 (295)
T cd05474 180 PALLDSGTTLTYLPSDIVDAIAKQLGATYDS------DEGLYVVDCDA--------K-DD-GSLTFNF-GGATISVPLSD 242 (295)
T ss_pred cEEECCCCccEeCCHHHHHHHHHHhCCEEcC------CCcEEEEeCCC--------C-CC-CEEEEEE-CCeEEEEEHHH
Confidence 8999999999999999999999999665431 12345567753 2 23 9999999 78999999999
Q ss_pred ceEEeee--cCCcEEEEEEEcC-CCCeeecHHhhheEEEEEECCCCEEEEEec
Q 010838 245 YLFRHMK--VSGAYCLGIFQNS-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (499)
Q Consensus 245 Yi~~~~~--~~~~~Cl~ii~~~-~~~~ILG~~FLr~~yvVFD~en~rIGFA~s 294 (499)
|+++... ..+..|+..+... .+.||||++|||++|++||++++|||||++
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9987642 2467897666665 478999999999999999999999999985
No 15
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=8.1e-37 Score=314.07 Aligned_cols=246 Identities=23% Similarity=0.437 Sum_probs=199.5
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCCC------hHHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRLS------VVDQLVE 93 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~S------~~~qL~~ 93 (499)
..|+|.+.|++|+ ++|.+++|+|++++ .+++++.|||+.++.+. +.....|||||||++..+ ++.+|++
T Consensus 67 ~~~~~~i~Y~~g~-~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~ 142 (329)
T cd05485 67 NGTEFAIQYGSGS-LSGFLSTDTVSVGG---VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVN 142 (329)
T ss_pred CCeEEEEEECCce-EEEEEecCcEEECC---EEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHh
Confidence 3689999999997 79999999999998 47789999999877653 444568999999998654 6899999
Q ss_pred cCCCC-CcEEEeecCCCC--CCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEc
Q 010838 94 KGVIS-DSFSLCYGGMDV--GGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~~~--~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivD 169 (499)
+|+|+ +.||+||.+... .+|+|+|||+|+++ ...+.+.+.....+|.|.++++.++++.+.. .+..++||
T Consensus 143 qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~------~~~~~iiD 216 (329)
T cd05485 143 QKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCS------GGCQAIAD 216 (329)
T ss_pred CCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecC------CCcEEEEc
Confidence 99997 889999986432 47999999999886 3455555555678999999999999986632 34579999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 010838 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (499)
Q Consensus 170 SGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~ 249 (499)
|||+++++|++++++|.+++.... . ....|..+|.. . +.+|+|+|+| +++++.|+|++|+++.
T Consensus 217 SGtt~~~lP~~~~~~l~~~~~~~~-----~--~~~~~~~~C~~--------~-~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 217 TGTSLIAGPVDEIEKLNNAIGAKP-----I--IGGEYMVNCSA--------I-PSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred cCCcceeCCHHHHHHHHHHhCCcc-----c--cCCcEEEeccc--------c-ccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 999999999999999998874321 1 11234556642 2 4689999999 8999999999999987
Q ss_pred eecCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 250 MKVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 250 ~~~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
.+....+|+..+... ++.||||++|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 654457899876642 35799999999999999999999999984
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1e-36 Score=311.60 Aligned_cols=235 Identities=27% Similarity=0.452 Sum_probs=192.0
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCC------ChHHHHHHc
Q 010838 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL------SVVDQLVEK 94 (499)
Q Consensus 22 ~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~------S~~~qL~~~ 94 (499)
.+++++.|++|+ ++|.+++|+|++++ .+++++.||++.++.+. +.....|||||||++.. +++++|+++
T Consensus 66 ~~~~~i~Yg~G~-~~G~~~~D~v~ig~---~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~q 141 (317)
T cd06098 66 GTSASIQYGTGS-ISGFFSQDSVTVGD---LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQ 141 (317)
T ss_pred CCEEEEEcCCce-EEEEEEeeEEEECC---EEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhc
Confidence 568999999986 69999999999998 57889999999877553 44557899999999754 478899999
Q ss_pred CCCC-CcEEEeecCCC--CCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEcc
Q 010838 95 GVIS-DSFSLCYGGMD--VGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (499)
Q Consensus 95 glI~-n~FSl~L~~~~--~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDS 170 (499)
|+|+ ++||+||.+.. ..+|+|+|||+|+++ ...+.|.+.....+|.|.+++|.|+++.+.... ....++|||
T Consensus 142 g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~----~~~~aivDT 217 (317)
T cd06098 142 GLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCA----GGCAAIADS 217 (317)
T ss_pred CCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecC----CCcEEEEec
Confidence 9998 78999998642 357999999999987 344555544567899999999999999876432 345799999
Q ss_pred CCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEee
Q 010838 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (499)
Q Consensus 171 GTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~ 250 (499)
||+++++|++++++|. +..+|+. . .++|+|+|+| +|+.+.|+|++|+++..
T Consensus 218 GTs~~~lP~~~~~~i~-------------------~~~~C~~--------~-~~~P~i~f~f-~g~~~~l~~~~yi~~~~ 268 (317)
T cd06098 218 GTSLLAGPTTIVTQIN-------------------SAVDCNS--------L-SSMPNVSFTI-GGKTFELTPEQYILKVG 268 (317)
T ss_pred CCcceeCCHHHHHhhh-------------------ccCCccc--------c-ccCCcEEEEE-CCEEEEEChHHeEEeec
Confidence 9999999998776553 2345742 2 3799999999 89999999999998875
Q ss_pred ecCCcEEEEEEEcC------CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 251 KVSGAYCLGIFQNS------DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 251 ~~~~~~Cl~ii~~~------~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
+.....|++.+... ++.||||++|||++|+|||++++|||||+
T Consensus 269 ~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 269 EGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 54456999877532 34799999999999999999999999985
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.5e-36 Score=304.15 Aligned_cols=236 Identities=33% Similarity=0.664 Sum_probs=189.6
Q ss_pred CcccccCCCCCC-CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCc-CcccccceEEEEEEeecCCC--CCCCCceEE
Q 010838 3 NTYQALKCNPDC-NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNE-SELVPQRAVFGCENLETGDL--YTQRADGIM 78 (499)
Q Consensus 3 sTy~~v~C~~~C-~C~~~~~~C~y~i~Y~dGss~sG~l~~DtVsigg~-s~iti~~~~FG~~~~~s~~~--~~~~~DGIL 78 (499)
|+--+|.|+..| .| .|.|++.|+|+++++|.+++|+|+++.. ....++++.|||+..+.+.+ .....||||
T Consensus 24 S~~~Wv~c~~~c~~c-----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIl 98 (273)
T cd05475 24 SDLTWLQCDAPCTGC-----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGIL 98 (273)
T ss_pred CCceEEeCCCCCCCC-----cCccEeEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEE
Confidence 445567786445 35 5899999998888999999999999742 11466789999998776543 234689999
Q ss_pred eeCCCCCChHHHHHHcCCCCCcEEEeecCCCCCCceEEECCCCCCCCceeeeeCCCC---CCceEEEEeEEEEcCEEeec
Q 010838 79 GLGRGRLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPPDMVFSHSDPFR---SPYYNIELKELRVAGKPLKV 155 (499)
Q Consensus 79 GLG~~~~S~~~qL~~~glI~n~FSl~L~~~~~~~G~I~fGgiD~s~~~~~~~~~~~~---~~~w~V~l~~I~Vgg~~l~l 155 (499)
|||+..+++++||.++++|+++||+||.+ ..+|.|+||+... +...+.|.+... ..+|.|++++|.||++.+.
T Consensus 99 GLg~~~~s~~~ql~~~~~i~~~Fs~~l~~--~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~- 174 (273)
T cd05475 99 GLGRGKISLPSQLASQGIIKNVIGHCLSS--NGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG- 174 (273)
T ss_pred ECCCCCCCHHHHHHhcCCcCceEEEEccC--CCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECc-
Confidence 99999999999999999998899999986 3469999996433 222334433333 3799999999999998543
Q ss_pred CCceecCCCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCC
Q 010838 156 SPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNG 235 (499)
Q Consensus 156 ~~~~f~~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g 235 (499)
..+..++|||||++++||+++| +|+|+|.|+++
T Consensus 175 -----~~~~~~ivDTGTt~t~lp~~~y------------------------------------------~p~i~~~f~~~ 207 (273)
T cd05475 175 -----GKGLEVVFDSGSSYTYFNAQAY------------------------------------------FKPLTLKFGKG 207 (273)
T ss_pred -----CCCceEEEECCCceEEcCCccc------------------------------------------cccEEEEECCC
Confidence 2345899999999999999865 57899999543
Q ss_pred ---eEEEeCCCCceEEeeecCCcEEEEEEEcC----CCCeeecHHhhheEEEEEECCCCEEEEEeccC
Q 010838 236 ---QKLTLSPENYLFRHMKVSGAYCLGIFQNS----DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (499)
Q Consensus 236 ---~~i~I~p~dYi~~~~~~~~~~Cl~ii~~~----~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C 296 (499)
++++|+|++|++...+ +..|++++... .+.||||+.|||++|+|||++++||||++++|
T Consensus 208 ~~~~~~~l~~~~y~~~~~~--~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 208 WRTRLLEIPPENYLIISEK--GNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CceeEEEeCCCceEEEcCC--CCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 7999999999987543 66899998764 35799999999999999999999999999998
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.4e-35 Score=308.79 Aligned_cols=272 Identities=25% Similarity=0.370 Sum_probs=197.9
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCC-CCCceEEeeCCCCC--------ChHHH
Q 010838 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYT-QRADGIMGLGRGRL--------SVVDQ 90 (499)
Q Consensus 20 ~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~-~~~DGILGLG~~~~--------S~~~q 90 (499)
...|+|++.|++|+ ++|.+++|+|+|++..... ..+.|+++....+.+.. ...|||||||++.+ +++++
T Consensus 52 ~~~~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~-~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~ 129 (364)
T cd05473 52 DLGKGVTVPYTQGS-WEGELGTDLVSIPKGPNVT-FRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDS 129 (364)
T ss_pred cCCceEEEEECcce-EEEEEEEEEEEECCCCccc-eEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHH
Confidence 35899999999996 6999999999998632111 12345666544443333 36799999999754 58899
Q ss_pred HHHcCCCCCcEEEeecCC---------CCCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCcee
Q 010838 91 LVEKGVISDSFSLCYGGM---------DVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIF 160 (499)
Q Consensus 91 L~~~glI~n~FSl~L~~~---------~~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f 160 (499)
|++|+.++++||++|+.. ....|.|+|||+|+++ ...+.|.+.....+|.|.+++|.|+++.+.++...+
T Consensus 130 l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~ 209 (364)
T cd05473 130 LVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEY 209 (364)
T ss_pred HHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccc
Confidence 999999888999988631 1247999999999887 333444444456799999999999999887654322
Q ss_pred cCCCcEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCC-CCCccccccCCCCcCcccccCCCCeEEEEEcC-----
Q 010838 161 DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGP-DPNYDDICFSGAGRDVSELSKTFPQVDMVFGN----- 234 (499)
Q Consensus 161 ~~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~-~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~----- 234 (499)
. ...++|||||++++||+++|++|.+++.++.... ..... ...+...|++.... ....+|+|+|+|++
T Consensus 210 ~-~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~C~~~~~~----~~~~~P~i~~~f~g~~~~~ 283 (364)
T cd05473 210 N-YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIE-DFPDGFWLGSQLACWQKGTT----PWEIFPKISIYLRDENSSQ 283 (364)
T ss_pred c-CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccc-cCCccccCcceeecccccCc----hHhhCCcEEEEEccCCCCc
Confidence 2 2369999999999999999999999998764311 11100 01123467643211 11369999999954
Q ss_pred CeEEEeCCCCceEEeeec-CCcEEEEEEE-cCCCCeeecHHhhheEEEEEECCCCEEEEEeccCCcc
Q 010838 235 GQKLTLSPENYLFRHMKV-SGAYCLGIFQ-NSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNCSEL 299 (499)
Q Consensus 235 g~~i~I~p~dYi~~~~~~-~~~~Cl~ii~-~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C~~~ 299 (499)
+.++.|+|++|+...... .+..|+++.. ...+.||||+.|||++|+|||++++|||||+++|...
T Consensus 284 ~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 284 SFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred eEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 247899999999865321 2468986332 2356799999999999999999999999999999874
No 19
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.9e-35 Score=314.96 Aligned_cols=244 Identities=23% Similarity=0.308 Sum_probs=193.9
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC---CCCCCCceEEeeCCCCC------ChHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD---LYTQRADGIMGLGRGRL------SVVDQL 91 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~---~~~~~~DGILGLG~~~~------S~~~qL 91 (499)
..|+|++.|++|+ ++|.+++|+|+||+. +++ ..|+++..+.+. +....+|||||||++.+ +++.+|
T Consensus 193 ~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~---~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L 267 (453)
T PTZ00147 193 DGTKVEMNYVSGT-VSGFFSKDLVTIGNL---SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVEL 267 (453)
T ss_pred CCCEEEEEeCCCC-EEEEEEEEEEEECCE---EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHH
Confidence 4789999999996 799999999999984 555 579988766541 23446899999999765 478899
Q ss_pred HHcCCCC-CcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEc
Q 010838 92 VEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLD 169 (499)
Q Consensus 92 ~~~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivD 169 (499)
++||+|+ ++||+||.+.+...|.|+|||+|+++ ...+.|.+.....+|.|.++ +.+++... .+..++||
T Consensus 268 ~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~~--------~~~~aIiD 338 (453)
T PTZ00147 268 KNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVSS--------EKANVIVD 338 (453)
T ss_pred HHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEec--------CceeEEEC
Confidence 9999998 78999998766668999999999987 34455554456779999998 57776432 24589999
Q ss_pred cCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEe
Q 010838 170 SGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRH 249 (499)
Q Consensus 170 SGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~ 249 (499)
|||+++++|+++++++.+++..... ...+.+..+|+. ..+|+|+|.| +|..++|+|++|+...
T Consensus 339 SGTsli~lP~~~~~ai~~~l~~~~~------~~~~~y~~~C~~----------~~lP~~~f~f-~g~~~~L~p~~yi~~~ 401 (453)
T PTZ00147 339 SGTSVITVPTEFLNKFVESLDVFKV------PFLPLYVTTCNN----------TKLPTLEFRS-PNKVYTLEPEYYLQPI 401 (453)
T ss_pred CCCchhcCCHHHHHHHHHHhCCeec------CCCCeEEEeCCC----------CCCCeEEEEE-CCEEEEECHHHheecc
Confidence 9999999999999999998843211 112234556742 3789999999 7999999999999865
Q ss_pred eecCCcEEEEEEEcC---CCCeeecHHhhheEEEEEECCCCEEEEEecc
Q 010838 250 MKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (499)
Q Consensus 250 ~~~~~~~Cl~ii~~~---~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~ 295 (499)
.+.....|+..+... .+.||||++|||++|+|||++++|||||+++
T Consensus 402 ~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 402 EDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred ccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 443456898766553 3579999999999999999999999999985
No 20
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4.6e-35 Score=311.66 Aligned_cols=245 Identities=22% Similarity=0.333 Sum_probs=192.6
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecC--C-CCCCCCceEEeeCCCCC------ChHHH
Q 010838 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETG--D-LYTQRADGIMGLGRGRL------SVVDQ 90 (499)
Q Consensus 20 ~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~--~-~~~~~~DGILGLG~~~~------S~~~q 90 (499)
...|+|++.|++|+ ++|.+++|+|++|+. +++ ..|+++....+ . +....+|||||||++.+ +++++
T Consensus 191 ~~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~---~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~ 265 (450)
T PTZ00013 191 KDGTKVDITYGSGT-VKGFFSKDLVTLGHL---SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVE 265 (450)
T ss_pred cCCcEEEEEECCce-EEEEEEEEEEEECCE---EEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHH
Confidence 34689999999996 799999999999984 554 57888876542 1 33446899999999765 57899
Q ss_pred HHHcCCCC-CcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEE
Q 010838 91 LVEKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (499)
Q Consensus 91 L~~~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiv 168 (499)
|++||+|+ ++||+||.+.+...|.|+|||+|+++ ...+.|.+.....+|.|+++ +.+|.... .+..++|
T Consensus 266 L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~--------~~~~aIl 336 (450)
T PTZ00013 266 LKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM--------QKANVIV 336 (450)
T ss_pred HHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec--------cccceEE
Confidence 99999998 78999998755568999999999987 34555555556789999998 66664432 2457999
Q ss_pred ccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEE
Q 010838 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (499)
Q Consensus 169 DSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~ 248 (499)
||||+++++|+++++++.+++..... ...+.+..+|+. ..+|+|+|.| +|.+++|+|++|+..
T Consensus 337 DSGTSli~lP~~~~~~i~~~l~~~~~------~~~~~y~~~C~~----------~~lP~i~F~~-~g~~~~L~p~~Yi~~ 399 (450)
T PTZ00013 337 DSGTTTITAPSEFLNKFFANLNVIKV------PFLPFYVTTCDN----------KEMPTLEFKS-ANNTYTLEPEYYMNP 399 (450)
T ss_pred CCCCccccCCHHHHHHHHHHhCCeec------CCCCeEEeecCC----------CCCCeEEEEE-CCEEEEECHHHheeh
Confidence 99999999999999999988743211 112234556642 3789999999 789999999999976
Q ss_pred eeecCCcEEEEEEEcC---CCCeeecHHhhheEEEEEECCCCEEEEEecc
Q 010838 249 HMKVSGAYCLGIFQNS---DSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 295 (499)
Q Consensus 249 ~~~~~~~~Cl~ii~~~---~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~ 295 (499)
....++..|+..+.+. ++.||||++|||++|+|||++++|||||+++
T Consensus 400 ~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 400 LLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred hccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4433467898777653 4579999999999999999999999999874
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.7e-35 Score=294.97 Aligned_cols=247 Identities=30% Similarity=0.529 Sum_probs=204.6
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCC-------CChHHHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGR-------LSVVDQLV 92 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~-------~S~~~qL~ 92 (499)
..+++.+.|++|+ ++|.+++|+|+|++ +++.++.||++.+..+. +.....|||||||++. .+++++|+
T Consensus 56 ~~~~~~~~y~~g~-~~G~~~~D~v~ig~---~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 56 QGKPFSISYGDGS-VSGNLVSDTVSIGG---LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEEEEEEEETTEE-EEEEEEEEEEEETT---EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred ceeeeeeeccCcc-cccccccceEeeee---ccccccceeccccccccccccccccccccccCCcccccccCCcceecch
Confidence 3678999999998 89999999999999 57778999999996554 3345689999999743 47999999
Q ss_pred HcCCCC-CcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEcc
Q 010838 93 EKGVIS-DSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDS 170 (499)
Q Consensus 93 ~~glI~-n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDS 170 (499)
++|+|+ ++||++|++.+...|.|+|||+|+++ ...+.|.+.....+|.+.+++|.++++.... .....++|||
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~-----~~~~~~~~Dt 206 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFS-----SSGQQAILDT 206 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEE-----EEEEEEEEET
T ss_pred hhccccccccceeeeecccccchheeeccccccccCceeccCccccccccccccccccccccccc-----ccceeeeccc
Confidence 999998 88999999866567999999999987 4556666566888999999999999993322 1234799999
Q ss_pred CCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEee
Q 010838 171 GTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHM 250 (499)
Q Consensus 171 GTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~ 250 (499)
|+++++||++++++|++++...... ..+..+| +.. ..+|.|+|.| ++.++.|+|++|+.+..
T Consensus 207 gt~~i~lp~~~~~~i~~~l~~~~~~--------~~~~~~c--------~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~ 268 (317)
T PF00026_consen 207 GTSYIYLPRSIFDAIIKALGGSYSD--------GVYSVPC--------NST-DSLPDLTFTF-GGVTFTIPPSDYIFKIE 268 (317)
T ss_dssp TBSSEEEEHHHHHHHHHHHTTEEEC--------SEEEEET--------TGG-GGSEEEEEEE-TTEEEEEEHHHHEEEES
T ss_pred ccccccccchhhHHHHhhhcccccc--------eeEEEec--------ccc-cccceEEEee-CCEEEEecchHhccccc
Confidence 9999999999999999999655431 2344555 333 4789999999 79999999999999987
Q ss_pred ecCCcEEEEEEEc----C-CCCeeecHHhhheEEEEEECCCCEEEEEec
Q 010838 251 KVSGAYCLGIFQN----S-DSTTLLGGIVVRNTLVTYDRGNDKVGFWKT 294 (499)
Q Consensus 251 ~~~~~~Cl~ii~~----~-~~~~ILG~~FLr~~yvVFD~en~rIGFA~s 294 (499)
......|+..+.. . .+.++||.+|||++|++||.+++|||||++
T Consensus 269 ~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 269 DGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp STTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 6555699998887 2 678999999999999999999999999985
No 22
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5e-33 Score=279.02 Aligned_cols=212 Identities=18% Similarity=0.298 Sum_probs=170.0
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCC-CCCCCCceEEeeCCCCC---------ChHHH
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGD-LYTQRADGIMGLGRGRL---------SVVDQ 90 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~-~~~~~~DGILGLG~~~~---------S~~~q 90 (499)
+.|+|.+.|++|+.++|.+++|+|+|++ .+++++.||+++.+++. +.....|||||||++.. +++++
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~ 131 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGG---VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFEN 131 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECC---EEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHH
Confidence 4689999999998889999999999998 57889999999987764 34567899999999754 47889
Q ss_pred HHHcCCCCCcEEEeecCCCCCCceEEECCCCCCC-CceeeeeCCCC-CCceEEEEeEEEEcCEEeecCCceecCCCcEEE
Q 010838 91 LVEKGVISDSFSLCYGGMDVGGGAMVLGGITPPP-DMVFSHSDPFR-SPYYNIELKELRVAGKPLKVSPRIFDGGHGTVL 168 (499)
Q Consensus 91 L~~~glI~n~FSl~L~~~~~~~G~I~fGgiD~s~-~~~~~~~~~~~-~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aiv 168 (499)
|.+++. ++.||+||.+ ..+|+|+|||+|+++ ...+.|.+... ..+|.|++++|.|+++.... ..+..++|
T Consensus 132 l~~~~~-~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~-----~~~~~~ii 203 (278)
T cd06097 132 ALSSLD-APLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS-----RSGFSAIA 203 (278)
T ss_pred HHHhcc-CceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee-----cCCceEEe
Confidence 998865 7899999986 357999999999886 34455554443 68999999999999984322 24568999
Q ss_pred ccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEE
Q 010838 169 DSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFR 248 (499)
Q Consensus 169 DSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~ 248 (499)
||||+++++|++++++|.+++..... ......|..+| +. .+|+|+|+|
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l~g~~~-----~~~~~~~~~~C--------~~---~~P~i~f~~---------------- 251 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQVPGAYY-----DSEYGGWVFPC--------DT---TLPDLSFAV---------------- 251 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhCcCCcc-----cCCCCEEEEEC--------CC---CCCCEEEEE----------------
Confidence 99999999999999999988832111 01122344455 32 389999998
Q ss_pred eeecCCcEEEEEEEcCCCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 249 HMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 249 ~~~~~~~~Cl~ii~~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
.||||++|||++|+|||++++|||||+
T Consensus 252 ------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.98 E-value=9.3e-31 Score=260.39 Aligned_cols=217 Identities=31% Similarity=0.574 Sum_probs=176.3
Q ss_pred CCCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeCCCC------CChHHHHHH
Q 010838 20 RKECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGRGR------LSVVDQLVE 93 (499)
Q Consensus 20 ~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG~~~------~S~~~qL~~ 93 (499)
+..|.|++.|++| .++|.+++|+|++++. +++++.|||+......+.....+||||||+.. .+++++|++
T Consensus 55 ~~~~~~~~~Y~~g-~~~g~~~~D~v~~~~~---~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 55 DTGCTFSITYGDG-SVTGGLGTDTVTIGGL---TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred cCCCEEEEEECCC-eEEEEEEEeEEEECCE---EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH
Confidence 5689999999987 5799999999999984 57899999999887655566789999999988 789999999
Q ss_pred cCCCC-CcEEEeecCC--CCCCceEEECCCCCCC-CceeeeeCCCC--CCceEEEEeEEEEcCEEeecCCceecCCCcEE
Q 010838 94 KGVIS-DSFSLCYGGM--DVGGGAMVLGGITPPP-DMVFSHSDPFR--SPYYNIELKELRVAGKPLKVSPRIFDGGHGTV 167 (499)
Q Consensus 94 ~glI~-n~FSl~L~~~--~~~~G~I~fGgiD~s~-~~~~~~~~~~~--~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~ai 167 (499)
+++|. +.||+||.+. ....|.|+|||+|+.+ ...+.|.+... ..+|.|.+++|.|+++.... ......++
T Consensus 131 ~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~----~~~~~~~i 206 (283)
T cd05471 131 QGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVIS----SSGGGGAI 206 (283)
T ss_pred CCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeee----cCCCcEEE
Confidence 99988 8999999985 3468999999999985 33444443333 78999999999999974111 12456899
Q ss_pred EccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCCceE
Q 010838 168 LDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLF 247 (499)
Q Consensus 168 vDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~ 247 (499)
|||||++++||++++++|.+++.+.... ...|+ ...|... ..+|+|+|+|
T Consensus 207 iDsGt~~~~lp~~~~~~l~~~~~~~~~~-----------~~~~~---~~~~~~~-~~~p~i~f~f--------------- 256 (283)
T cd05471 207 VDSGTSLIYLPSSVYDAILKALGAAVSS-----------SDGGY---GVDCSPC-DTLPDITFTF--------------- 256 (283)
T ss_pred EecCCCCEeCCHHHHHHHHHHhCCcccc-----------cCCcE---EEeCccc-CcCCCEEEEE---------------
Confidence 9999999999999999999999665542 11111 1122222 5899999999
Q ss_pred EeeecCCcEEEEEEEcCCCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 248 RHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 248 ~~~~~~~~~Cl~ii~~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
.+|||++|||++|++||++++|||||+
T Consensus 257 -------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=1.5e-23 Score=194.30 Aligned_cols=154 Identities=33% Similarity=0.628 Sum_probs=120.3
Q ss_pred ceEEEEeEEEEcCEEeecCCcee---cCCCcEEEccCCceeeecHHHHHHHHHHHHHhhccccccc-CCCCCccccccCC
Q 010838 138 YYNIELKELRVAGKPLKVSPRIF---DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR-GPDPNYDDICFSG 213 (499)
Q Consensus 138 ~w~V~l~~I~Vgg~~l~l~~~~f---~~~~~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~-~~~~~~~~~C~~~ 213 (499)
+|.|+|++|+||++++.+++..| ++...++|||||++++||+++|++|+++|.+++......+ .........||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999999998877 4567899999999999999999999999999887543111 1223457899987
Q ss_pred CCcCcccccCCCCeEEEEEcCCeEEEeCCCCceEEeeecCCcEEEEEEEc---CCCCeeecHHhhheEEEEEECCCCEEE
Q 010838 214 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN---SDSTTLLGGIVVRNTLVTYDRGNDKVG 290 (499)
Q Consensus 214 ~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~dYi~~~~~~~~~~Cl~ii~~---~~~~~ILG~~FLr~~yvVFD~en~rIG 290 (499)
....-...+..+|+|+|+|.+|.+++|+|++|++.... +.+|+++... .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 65322334569999999998899999999999999864 7899999999 378999999999999999999999999
Q ss_pred EEe
Q 010838 291 FWK 293 (499)
Q Consensus 291 FA~ 293 (499)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.69 E-value=8.3e-17 Score=149.92 Aligned_cols=115 Identities=36% Similarity=0.706 Sum_probs=93.1
Q ss_pred CCCcccccCCCC-CC--------CCCCCCCCceEEEEeCCCceEEEEEEEEEEEeCCcC--cccccceEEEEEEeecCCC
Q 010838 1 MSNTYQALKCNP-DC--------NCDNDRKECIYERRYAEMSTSSGVLGVDVISFGNES--ELVPQRAVFGCENLETGDL 69 (499)
Q Consensus 1 ~SsTy~~v~C~~-~C--------~C~~~~~~C~y~i~Y~dGss~sG~l~~DtVsigg~s--~iti~~~~FG~~~~~s~~~ 69 (499)
+|+||++|+|++ .| .|...++.|.|.+.|+|++.+.|.+++|+|+++... .....++.|||+....+.+
T Consensus 38 ~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~ 117 (164)
T PF14543_consen 38 KSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF 117 (164)
T ss_dssp TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS
T ss_pred cCCcccccCCCCcchhhcccccccCCCCcCcccceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC
Confidence 599999999985 35 355557899999999999999999999999997642 1456789999999988654
Q ss_pred CCCCCceEEeeCCCCCChHHHHHHcCCCCCcEEEeecC-CCCCCceEEECC
Q 010838 70 YTQRADGIMGLGRGRLSVVDQLVEKGVISDSFSLCYGG-MDVGGGAMVLGG 119 (499)
Q Consensus 70 ~~~~~DGILGLG~~~~S~~~qL~~~glI~n~FSl~L~~-~~~~~G~I~fGg 119 (499)
. ..+||||||+..+||+.||+++ ..++||+||.+ .....|.|+||+
T Consensus 118 ~--~~~GilGLg~~~~Sl~sQl~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 118 Y--GADGILGLGRGPLSLPSQLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp T--TEEEEEE-SSSTTSHHHHHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred c--CCCcccccCCCcccHHHHHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 4 7899999999999999999998 66899999998 456789999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=98.40 E-value=1e-06 Score=75.59 Aligned_cols=56 Identities=34% Similarity=0.620 Sum_probs=48.0
Q ss_pred CCceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCC-CCCCceEEee
Q 010838 21 KECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLY-TQRADGIMGL 80 (499)
Q Consensus 21 ~~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~-~~~~DGILGL 80 (499)
..|+|.+.|++|+ +.|.+++|+|+|++ ++++++.|||++...+.+. ....||||||
T Consensus 53 ~~~~~~~~Y~~g~-~~g~~~~D~v~ig~---~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTGS-LSGGLSTDTVSIGD---IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCCe-EEEEEEEEEEEECC---EEECCEEEEEEEecCCccccccccccccCC
Confidence 4799999999985 68999999999998 4688999999999877633 4568999998
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.15 E-value=0.15 Score=45.27 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCCeeecHHhhheEEEEEECCCCEEEE
Q 010838 265 DSTTLLGGIVVRNTLVTYDRGNDKVGF 291 (499)
Q Consensus 265 ~~~~ILG~~FLr~~yvVFD~en~rIGF 291 (499)
....|||..||+.+..+.|..+++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 456799999999999999999998853
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.50 E-value=0.58 Score=41.38 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCCceEEEEeEEEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 135 RSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 135 ~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
..++|.++ +.|||+++ .++||||++.+.+++++.+.+
T Consensus 8 ~~g~~~v~---~~InG~~~-----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 45566665 66788855 579999999999999988776
No 29
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=91.25 E-value=0.69 Score=40.01 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.6
Q ss_pred CCCeeecHHhhheEEEEEECCCCEE
Q 010838 265 DSTTLLGGIVVRNTLVTYDRGNDKV 289 (499)
Q Consensus 265 ~~~~ILG~~FLr~~yvVFD~en~rI 289 (499)
.+..+||..||+++-++.|+.++++
T Consensus 83 ~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 83 VDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CCccEecHHHHhhCCEEEehhhCcC
Confidence 3578999999999999999987753
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=84.82 E-value=2.5 Score=38.10 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=26.0
Q ss_pred CCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 265 DSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 265 ~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
+-..|||.++|+.+..+-|..+++|-|..
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 34589999999999999999999999964
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=81.92 E-value=2.1 Score=34.45 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=24.6
Q ss_pred EEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
+.|+|+.+ .++||||++.+.+++++++++
T Consensus 3 v~vng~~~-----------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----------EEEEcCCCCcEEECHHHHHHc
Confidence 56788755 579999999999999998777
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=80.08 E-value=33 Score=36.18 Aligned_cols=55 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred EeCCCceEEEEEEEEEEEeCCcCcccccceEEEE----------EEeecC--CCCCCCCceEEeeCCC
Q 010838 28 RYAEMSTSSGVLGVDVISFGNESELVPQRAVFGC----------ENLETG--DLYTQRADGIMGLGRG 83 (499)
Q Consensus 28 ~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~----------~~~~s~--~~~~~~~DGILGLG~~ 83 (499)
.|++| +.-|-+.+.+|+|++.....++-|+++- ...... ......++||||+|.-
T Consensus 83 ~F~sg-ytWGsVr~AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASG-YTWGSVRTADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCc-ccccceEEEEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 56775 5689999999999996322333333322 111110 0113457999999873
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.75 E-value=3.7 Score=33.88 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=26.1
Q ss_pred EEEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHHH
Q 010838 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFK 186 (499)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l~ 186 (499)
.+.|+|+.+ .++||||++.+.++++.+..+-
T Consensus 4 ~~~Ing~~i-----------~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPL-----------KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEE-----------EEEEcCCcceEEeCHHHHHHhC
Confidence 367888877 4699999999999999988763
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=76.80 E-value=4 Score=32.46 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=25.1
Q ss_pred EEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
+.|+++.+ .+++|||++..+++++..+.+
T Consensus 13 ~~I~g~~~-----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----------EEEEeCCCcceecCHHHHHHh
Confidence 66788766 489999999999999998887
No 35
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=74.09 E-value=21 Score=33.50 Aligned_cols=86 Identities=14% Similarity=0.245 Sum_probs=48.2
Q ss_pred cEEEccCCceeeecHHHHHHHHHHHHHhhcccccccCCCCCccccccCCCCcCcccccCCCCeEEEEEcCCeEEEeCCCC
Q 010838 165 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPEN 244 (499)
Q Consensus 165 ~aivDSGTs~i~LP~~v~~~l~~aI~~~v~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~Itf~f~~g~~i~I~p~d 244 (499)
.++||||++..+.-.++.+.|.=.. ...+ +.-+.-|-......|+ ..-.|+|.. ++..+.+. .
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L~~---------~~ap-p~~fRG~vs~~~~~ts----EAv~ld~~i-~n~~i~i~--a 109 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLELPT---------HDAP-PFRFRGFVSGESATTS----EAVTLDFYI-DNKLIDIA--A 109 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCCcc---------ccCC-CEEEeeeccCCceEEE----EeEEEEEEE-CCeEEEEE--E
Confidence 6899999999999999888774221 1111 1111112111111122 233566666 55555543 2
Q ss_pred ceEEeeecCCcEEEEEEEcCCCCeeecHHhhheEEEE
Q 010838 245 YLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVT 281 (499)
Q Consensus 245 Yi~~~~~~~~~~Cl~ii~~~~~~~ILG~~FLr~~yvV 281 (499)
|+... -+...|+|.|+|+.|=.+
T Consensus 110 YV~d~--------------m~~dlIIGnPiL~ryp~l 132 (177)
T PF12384_consen 110 YVTDN--------------MDHDLIIGNPILDRYPTL 132 (177)
T ss_pred EEecc--------------CCcceEeccHHHhhhHHH
Confidence 44333 256789999999987544
No 36
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.46 E-value=5.9 Score=32.12 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=23.9
Q ss_pred EEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
+.||++.+ .++||||++.+.++.+..+.+
T Consensus 7 v~i~~~~~-----------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 7 VTINGQPV-----------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 66777655 579999999999999887665
No 37
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=72.20 E-value=17 Score=30.59 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=16.7
Q ss_pred CCcEEEccCCceeeecHHHH
Q 010838 163 GHGTVLDSGTTYAYLPGHAF 182 (499)
Q Consensus 163 ~~~aivDSGTs~i~LP~~v~ 182 (499)
+...+||||+....+|....
T Consensus 9 ~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CcEEEEeCCCceEeeccccc
Confidence 45789999999999998663
No 38
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=68.44 E-value=56 Score=34.28 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=32.1
Q ss_pred EEEEEcCCCCeeecHHhhheEEEEEECCCCEEEEEeccC
Q 010838 258 LGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTNC 296 (499)
Q Consensus 258 l~ii~~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~s~C 296 (499)
+.++...+....||...||++--..|++++++-++...-
T Consensus 310 ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 310 FTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred eEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 444544467789999999999999999999999986644
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=67.35 E-value=9.5 Score=30.88 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=38.8
Q ss_pred CceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeCC
Q 010838 22 ECIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLGR 82 (499)
Q Consensus 22 ~C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG~ 82 (499)
.....+..++|.........+.+++++ .+..++.+........ ..|||||+.+
T Consensus 42 ~~~~~~~~~~G~~~~~~~~~~~i~ig~---~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 42 GGKVTVQTANGRVRAARVRLDSLQIGG---ITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred CCcEEEEecCCCccceEEEcceEEECC---cEEeccEEEEeCCccc-----CCceEeChHH
Confidence 345677778887777777799999998 4667777776654332 4799999863
No 40
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=67.00 E-value=16 Score=35.40 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCCCeEEEEEcCCeEEEeCCCCceEEeeecCCcEEEEEEEcCCCCeeecHHhhheEEEEEECCCCEEEEEe
Q 010838 223 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 293 (499)
Q Consensus 223 ~~~P~Itf~f~~g~~i~I~p~dYi~~~~~~~~~~Cl~ii~~~~~~~ILG~~FLr~~yvVFD~en~rIGFA~ 293 (499)
...+.+.+.+ ++..|.||- ++..+ .+-..|||.+|+|.|+=-.+.+ .+|-|-.
T Consensus 65 ~~~~~~~i~I-~~~~F~IP~---iYq~~-------------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 65 KKAKNGKIQI-ADKIFRIPT---IYQQE-------------SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EEecCceEEE-ccEEEeccE---EEEec-------------CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 3566677777 666666542 22211 2456899999999888777775 5788865
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=65.10 E-value=8.9 Score=31.41 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
+.|||+.+ ..++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----------EEEEECCCCeEEECHHHhhhc
Confidence 67788866 469999999999999998775
No 42
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=65.07 E-value=3.8 Score=28.96 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=18.2
Q ss_pred CCChhhhHHHHHhhhccccceEE
Q 010838 362 KPNFTELSEFIAHELQVDDIEVH 384 (499)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~ 384 (499)
++..++.|..+|+|++||.++|.
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVK 24 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSS
T ss_pred CcccCHHHHHHHHHcCCCccccc
Confidence 46778999999999999999873
No 43
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=64.98 E-value=36 Score=28.49 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.6
Q ss_pred cEEEccCCceeeecHHHHHHHH
Q 010838 165 GTVLDSGTTYAYLPGHAFAAFK 186 (499)
Q Consensus 165 ~aivDSGTs~i~LP~~v~~~l~ 186 (499)
.+.+|||++...+|...++.+.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 5799999999999999888774
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=56.54 E-value=12 Score=31.19 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEEcCEEeecCCceecCCCcEEEccCCceeeecHHH
Q 010838 145 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHA 181 (499)
Q Consensus 145 ~I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v 181 (499)
.|.++|+.+ .++||||+..+.++++.
T Consensus 9 ~v~i~g~~i-----------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----------EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----------EEEEecCCCcceecccc
Confidence 466777765 58999999999999865
No 45
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=56.42 E-value=19 Score=33.45 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=36.1
Q ss_pred CceeeeeEEEEEEeeecCCCCCCChhhhHHHHHhhhccccceEEEE
Q 010838 341 GAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLL 386 (499)
Q Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (499)
-+..++-+.+++. .....|.|+...+-++||+.|+++.+||.+-
T Consensus 87 ~g~~i~Nvd~tii--~~~PK~~P~~~amr~~ia~~L~i~~~~invK 130 (159)
T COG0245 87 KGYRIGNVDITII--AQRPKLGPYREAMRANIAELLGIPVDRINVK 130 (159)
T ss_pred hCcEEEeEEEEEE--EecCcccchHHHHHHHHHHHhCCCchheEEE
Confidence 4556676544444 4899999999999999999999999999883
No 46
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=56.41 E-value=22 Score=34.47 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCCCceEEEEeEEEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 134 FRSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 134 ~~~~~w~V~l~~I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
..+++|.++ ..|||+.+ ..+||||.|...++++....+
T Consensus 101 ~~~GHF~a~---~~VNGk~v-----------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKV-----------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEE-----------EEEEecCcceeecCHHHHHHh
Confidence 356788877 67899988 469999999999999886665
No 47
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.14 E-value=41 Score=30.04 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.2
Q ss_pred CCCeeecHHhhheEEEEEECCCCEE
Q 010838 265 DSTTLLGGIVVRNTLVTYDRGNDKV 289 (499)
Q Consensus 265 ~~~~ILG~~FLr~~yvVFD~en~rI 289 (499)
.+..++|...++..-.++|....++
T Consensus 93 ~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 93 LPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred CcccchhhhhhhhccEEEcCCcceE
Confidence 3445999999999999999876665
No 48
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=46.03 E-value=21 Score=22.53 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=14.0
Q ss_pred cchhhHHHHHHHHHHHhh
Q 010838 472 ASATSILKVLFRLLIIIH 489 (499)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~ 489 (499)
.+.-+.+-|||-||||+-
T Consensus 3 ~~~FalivVLFILLiIvG 20 (24)
T PF09680_consen 3 GSGFALIVVLFILLIIVG 20 (24)
T ss_pred CccchhHHHHHHHHHHhc
Confidence 445677889999999874
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.37 E-value=35 Score=30.48 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=23.5
Q ss_pred EEEcCEEeecCCceecCCCcEEEccCCceeeecHHHHHHH
Q 010838 146 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 185 (499)
Q Consensus 146 I~Vgg~~l~l~~~~f~~~~~aivDSGTs~i~LP~~v~~~l 185 (499)
+.+||+.+ .|+||||+..+.++....+.+
T Consensus 29 ~~ing~~v-----------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPV-----------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEE-----------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEE-----------EEEEeCCCCccccCHHHHHHc
Confidence 77899877 589999999999999998875
No 50
>PF13650 Asp_protease_2: Aspartyl protease
Probab=38.23 E-value=1.9e+02 Score=22.74 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=33.3
Q ss_pred ceEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeC
Q 010838 23 CIYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (499)
Q Consensus 23 C~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG 81 (499)
....+.-.+|........-+.+.+++ .+..++.|-... .....|||||+-
T Consensus 40 ~~~~~~~~~g~~~~~~~~~~~i~ig~---~~~~~~~~~v~~------~~~~~~~iLG~d 89 (90)
T PF13650_consen 40 VPISVSGAGGSVTVYRGRVDSITIGG---ITLKNVPFLVVD------LGDPIDGILGMD 89 (90)
T ss_pred eeEEEEeCCCCEEEEEEEEEEEEECC---EEEEeEEEEEEC------CCCCCEEEeCCc
Confidence 34555556666666667778999998 456667765554 123578999974
No 51
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=29.54 E-value=1.2e+02 Score=28.24 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=37.7
Q ss_pred ceeeeeEEEEEEeeecCCCCCCChhhhHHHHHhhhccccceEEEEEeeecC
Q 010838 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 392 (499)
Q Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (499)
...++- ++..+-.....+.|+..++-+.+|+.|+++.++|.+=-=|..|
T Consensus 88 g~~i~n--iD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E~ 136 (157)
T PF02542_consen 88 GYRIVN--IDITIIAERPKISPYRPAMRENLAKLLGIPPDRVNIKATTTEG 136 (157)
T ss_dssp TEEEEE--EEEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGEEEEEE-TTT
T ss_pred CcEEEE--EEEEEEcCCCccHHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 344554 6666678899999999999999999999999999885555433
No 52
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=27.48 E-value=25 Score=32.69 Aligned_cols=49 Identities=22% Similarity=0.469 Sum_probs=28.9
Q ss_pred hHHHHHHHHhhcccCCCCCCcceeEEeeeeccccc---ccccccccccccceeeccccc
Q 010838 414 TALNIILRLREHHMQFPERFGSHQLVKWNIEPQIK---HMETETRSIQNISACWCGCSR 469 (499)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 469 (499)
+++.=|.+-...--+||+.+=++ .+..+ ++-.+-+.+-+---|+|||.+
T Consensus 33 ~~~gDi~E~Tas~~~lP~fl~~~-------~~~i~~~Y~~A~~~~~~L~~iPCYCGCge 84 (158)
T PF13798_consen 33 HANGDIQETTASADVLPSFLDSA-------SPEIQEAYQMAAKHPELLEYIPCYCGCGE 84 (158)
T ss_pred ccchhHHHHhcCcccccHHHHcC-------CHHHHHHHHHHHHhHHHHHcCCcccCCCC
Confidence 55556777777777888766432 12222 222334444445579999986
No 53
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.50 E-value=64 Score=20.82 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=14.1
Q ss_pred chhhHHHHHHHHHHHhhhe
Q 010838 473 SATSILKVLFRLLIIIHGF 491 (499)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~ 491 (499)
+.-.++-|||-|||||-.-
T Consensus 6 ~gf~livVLFILLIIiga~ 24 (26)
T TIGR01732 6 GGFALIVVLFILLVIVGAA 24 (26)
T ss_pred cchHHHHHHHHHHHHhhee
Confidence 3446778999999998543
No 54
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=26.38 E-value=45 Score=27.15 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.5
Q ss_pred hhhHHHHHhhhccccceEEEE
Q 010838 366 TELSEFIAHELQVDDIEVHLL 386 (499)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ 386 (499)
.+|-+|+|+.|+|..++|.|+
T Consensus 43 ~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEEC
T ss_pred HHHHHHHHHHhCCCcccEEEE
Confidence 589999999999999999985
No 55
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=23.40 E-value=2.1e+02 Score=26.51 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=35.5
Q ss_pred ceeeeeEEEEEEeeecCCCCCCChhhhHHHHHhhhccccceEEEE
Q 010838 342 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLL 386 (499)
Q Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (499)
...++- +++.+-.....+.|+..+.-+.||+-|+++..+|.+=
T Consensus 87 g~~i~n--iD~tii~e~PKi~p~~~~m~~~ls~~L~~~~~~V~iK 129 (153)
T cd00554 87 GYEIVN--IDITIIAERPKISPYREAMRANLAELLGIPPSRVNIK 129 (153)
T ss_pred CCEEEE--EEEEEEecCCcchHHHHHHHHHHHHHhCCCCceEEEE
Confidence 345554 5566666779999999999999999999999999883
No 56
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=22.07 E-value=1.7e+02 Score=25.66 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=32.8
Q ss_pred eEEEEeCCCceEEEEEEEEEEEeCCcCcccccceEEEEEEeecCCCCCCCCceEEeeC
Q 010838 24 IYERRYAEMSTSSGVLGVDVISFGNESELVPQRAVFGCENLETGDLYTQRADGIMGLG 81 (499)
Q Consensus 24 ~y~i~Y~dGss~sG~l~~DtVsigg~s~iti~~~~FG~~~~~s~~~~~~~~DGILGLG 81 (499)
+..+.=+.|........-|.+.+|+ +...|+++....... ..+|+||+.
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~---~~~~nv~~~v~~~~~------~~~~LLGm~ 102 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGG---IVVNDVDAMVAEGGA------LSESLLGMS 102 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECC---EEEeCcEEEEeCCCc------CCceEcCHH
Confidence 3444445676656666889999999 577788876653221 137999985
No 57
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=21.73 E-value=1.4e+02 Score=27.75 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=36.6
Q ss_pred CceeeeeEEEEEEeeecCCCCCCChhhhHHHHHhhhccccceEEEEE
Q 010838 341 GAFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLN 387 (499)
Q Consensus 341 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (499)
.+..++- +++.+-.....+.|+..++-+.||+-|+++..+|.+=-
T Consensus 86 ~g~~i~n--iD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKa 130 (155)
T TIGR00151 86 KGYRIGN--VDITIIAQRPKLLPHIPAMRENIAELLGIPLDSVNVKA 130 (155)
T ss_pred cCCEEEE--EEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEE
Confidence 3556665 44555588999999999999999999999999998833
No 58
>PF11615 DUF3249: Protein of unknown function (DUF3249); InterPro: IPR021653 This family of proteins represents the gene product of the protein CAF4, the yeast protein YKR036c. This protein contains seven WD40 repeats in its C terminus. The function however is unknown []. ; PDB: 2PQR_D.
Probab=20.64 E-value=54 Score=24.29 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=13.0
Q ss_pred cccchhhHHHHHHHHhhcccCCCCC
Q 010838 408 NYISNTTALNIILRLREHHMQFPER 432 (499)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (499)
+|-..+|...|++.|-|.|.+||.-
T Consensus 13 nyadsattfrilahldeqryplpng 37 (60)
T PF11615_consen 13 NYADSATTFRILAHLDEQRYPLPNG 37 (60)
T ss_dssp ----HHHHHHHHT---TTTS---SS
T ss_pred cccchhhHHHHHHhhcccccCCCCc
Confidence 3445678899999999999999974
Done!