Query 010840
Match_columns 499
No_of_seqs 205 out of 1675
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.2E-79 2.6E-84 655.8 31.6 461 2-482 105-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 2.3E-54 5E-59 441.0 29.1 389 3-478 94-493 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 2.7E-49 5.9E-54 429.7 38.5 391 2-475 55-654 (654)
4 PF00854 PTR2: POT family; In 100.0 8.2E-51 1.8E-55 419.4 14.2 365 3-414 3-371 (372)
5 PRK15462 dipeptide/tripeptide 100.0 4.9E-42 1.1E-46 361.7 35.6 394 3-481 78-488 (493)
6 PRK10207 dipeptide/tripeptide 100.0 9.6E-39 2.1E-43 340.2 36.7 394 3-483 83-487 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 4.1E-38 8.8E-43 334.8 35.9 381 3-477 81-473 (475)
8 PRK09584 tppB putative tripept 100.0 1.3E-37 2.7E-42 332.9 35.5 390 3-483 90-490 (500)
9 PRK10489 enterobactin exporter 99.5 6.1E-11 1.3E-15 124.0 28.9 299 52-488 110-415 (417)
10 PRK11646 multidrug resistance 99.4 4.1E-10 8.8E-15 117.5 28.2 260 52-428 99-358 (400)
11 PRK10054 putative transporter; 99.3 3.1E-10 6.8E-15 118.1 24.8 79 54-139 98-176 (395)
12 TIGR00893 2A0114 d-galactonate 99.3 2.7E-09 5.8E-14 109.0 28.8 86 51-142 81-166 (399)
13 PRK03545 putative arabinose tr 99.3 4.1E-09 8.9E-14 109.2 29.4 83 52-140 97-179 (390)
14 TIGR00900 2A0121 H+ Antiporter 99.3 2.4E-09 5.2E-14 108.6 27.1 265 51-426 91-360 (365)
15 PRK05122 major facilitator sup 99.3 9.4E-09 2E-13 106.7 31.9 79 51-135 111-189 (399)
16 PRK15402 multidrug efflux syst 99.3 8.1E-09 1.8E-13 107.6 30.6 83 53-141 102-184 (406)
17 cd06174 MFS The Major Facilita 99.3 5.3E-09 1.2E-13 105.1 27.6 260 52-468 87-348 (352)
18 PRK09874 drug efflux system pr 99.2 6.6E-09 1.4E-13 107.8 28.0 83 52-141 107-189 (408)
19 PRK11551 putative 3-hydroxyphe 99.2 1.6E-08 3.6E-13 105.0 30.0 82 52-139 103-184 (406)
20 PRK10504 putative transporter; 99.2 3.7E-08 8E-13 104.7 32.5 86 52-143 98-183 (471)
21 TIGR00879 SP MFS transporter, 99.2 7.4E-09 1.6E-13 108.8 26.7 85 52-142 127-214 (481)
22 PRK12382 putative transporter; 99.2 2.8E-08 6.1E-13 102.9 30.4 76 51-132 111-186 (392)
23 PF05977 MFS_3: Transmembrane 99.2 3E-08 6.6E-13 106.5 31.0 289 4-427 78-367 (524)
24 PF07690 MFS_1: Major Facilita 99.2 4.6E-09 9.9E-14 106.1 23.4 83 53-141 86-168 (352)
25 TIGR00902 2A0127 phenyl propri 99.2 1.3E-08 2.7E-13 105.4 26.1 278 51-467 93-374 (382)
26 TIGR00892 2A0113 monocarboxyla 99.2 5.3E-09 1.1E-13 111.0 23.1 62 366-427 332-393 (455)
27 TIGR00894 2A0114euk Na(+)-depe 99.2 1.3E-08 2.8E-13 108.1 26.0 81 53-139 132-213 (465)
28 TIGR00792 gph sugar (Glycoside 99.1 3.3E-08 7.1E-13 103.7 27.5 267 51-427 98-378 (437)
29 TIGR00926 2A1704 Peptide:H+ sy 99.1 4.7E-09 1E-13 115.3 21.0 277 7-349 57-343 (654)
30 PRK10077 xylE D-xylose transpo 99.1 6.3E-08 1.4E-12 102.9 28.9 85 51-141 119-211 (479)
31 PRK11128 putative 3-phenylprop 99.1 3.7E-08 8.1E-13 101.8 26.4 260 51-427 93-353 (382)
32 TIGR00710 efflux_Bcr_CflA drug 99.1 9.4E-08 2E-12 98.1 28.7 85 52-142 93-177 (385)
33 PRK06814 acylglycerophosphoeth 99.1 2.7E-08 5.9E-13 117.3 27.2 284 51-427 107-394 (1140)
34 TIGR00901 2A0125 AmpG-related 99.1 6.7E-08 1.5E-12 98.7 26.0 262 51-413 82-355 (356)
35 PRK14995 methyl viologen resis 99.1 4.7E-08 1E-12 104.9 25.8 86 51-141 93-178 (495)
36 TIGR00711 efflux_EmrB drug res 99.1 4.6E-08 9.9E-13 104.0 25.0 84 52-141 90-173 (485)
37 PRK12307 putative sialic acid 99.1 1.4E-07 3E-12 98.8 28.0 76 52-133 106-181 (426)
38 TIGR00895 2A0115 benzoate tran 99.0 1.4E-07 3.1E-12 96.8 26.3 82 52-139 105-186 (398)
39 PRK11663 regulatory protein Uh 99.0 3E-07 6.4E-12 96.9 29.0 80 52-137 111-190 (434)
40 PRK11102 bicyclomycin/multidru 99.0 4.6E-07 1E-11 93.0 29.8 83 53-141 80-162 (377)
41 PRK08633 2-acyl-glycerophospho 99.0 1.5E-07 3.2E-12 111.0 29.6 63 52-120 103-165 (1146)
42 TIGR00899 2A0120 sugar efflux 99.0 4E-07 8.6E-12 93.2 28.9 84 54-141 89-172 (375)
43 PRK11010 ampG muropeptide tran 99.0 5E-07 1.1E-11 96.9 30.4 85 51-141 106-191 (491)
44 PRK10213 nepI ribonucleoside t 99.0 4.7E-07 1E-11 94.3 29.3 82 51-138 107-188 (394)
45 TIGR01299 synapt_SV2 synaptic 99.0 6.7E-07 1.4E-11 99.7 31.7 81 323-426 627-707 (742)
46 PRK10473 multidrug efflux syst 99.0 6.7E-07 1.5E-11 92.6 29.9 82 53-140 92-173 (392)
47 PRK15011 sugar efflux transpor 99.0 8.2E-07 1.8E-11 92.2 29.3 69 68-141 121-190 (393)
48 TIGR00898 2A0119 cation transp 99.0 9.4E-07 2E-11 94.8 30.3 82 52-142 180-261 (505)
49 PRK11195 lysophospholipid tran 98.9 1.1E-06 2.4E-11 91.4 29.5 76 57-139 93-168 (393)
50 PRK15403 multidrug efflux syst 98.9 7.2E-07 1.6E-11 93.5 28.3 83 52-140 104-186 (413)
51 PRK09848 glucuronide transport 98.9 4.6E-07 1E-11 95.8 26.6 88 319-427 292-386 (448)
52 PRK11273 glpT sn-glycerol-3-ph 98.9 1.6E-06 3.5E-11 91.8 30.6 82 52-139 120-202 (452)
53 TIGR00890 2A0111 Oxalate/Forma 98.9 2.5E-07 5.4E-12 94.1 23.3 83 52-141 91-173 (377)
54 PRK11043 putative transporter; 98.9 1.5E-06 3.2E-11 90.3 29.1 84 52-141 94-177 (401)
55 TIGR00883 2A0106 metabolite-pr 98.9 3.7E-07 8E-12 93.5 24.1 81 53-139 97-185 (394)
56 PRK03633 putative MFS family t 98.9 1.2E-06 2.6E-11 90.5 27.5 70 52-127 94-163 (381)
57 PRK11902 ampG muropeptide tran 98.9 4.9E-06 1.1E-10 86.7 31.8 84 51-140 93-177 (402)
58 PRK11652 emrD multidrug resist 98.9 4.5E-06 9.8E-11 86.5 30.9 82 52-139 96-177 (394)
59 PRK09705 cynX putative cyanate 98.9 2.1E-06 4.5E-11 89.3 28.3 78 53-137 98-176 (393)
60 TIGR00881 2A0104 phosphoglycer 98.9 4.6E-07 9.9E-12 92.2 22.9 84 52-141 83-167 (379)
61 TIGR01301 GPH_sucrose GPH fami 98.9 5.8E-06 1.3E-10 87.8 31.3 302 52-427 114-442 (477)
62 PRK03893 putative sialic acid 98.9 6.9E-07 1.5E-11 95.4 24.8 78 52-135 108-185 (496)
63 TIGR00889 2A0110 nucleoside tr 98.8 5.2E-06 1.1E-10 87.2 30.3 136 320-489 280-416 (418)
64 PRK10091 MFS transport protein 98.8 2.7E-06 5.9E-11 87.9 27.7 82 52-139 91-172 (382)
65 TIGR00788 fbt folate/biopterin 98.8 2.8E-07 6E-12 98.3 19.9 84 55-142 123-206 (468)
66 PRK10642 proline/glycine betai 98.8 6.5E-06 1.4E-10 88.2 30.5 74 54-133 120-201 (490)
67 TIGR00891 2A0112 putative sial 98.8 1.8E-06 3.9E-11 89.0 25.1 81 52-138 100-182 (405)
68 PRK09528 lacY galactoside perm 98.8 1.8E-06 3.8E-11 90.5 25.1 135 285-471 267-402 (420)
69 PRK03699 putative transporter; 98.8 6E-06 1.3E-10 85.7 28.8 83 52-140 95-178 (394)
70 PRK10429 melibiose:sodium symp 98.8 4E-06 8.7E-11 89.5 27.2 61 367-427 324-391 (473)
71 PF13347 MFS_2: MFS/sugar tran 98.8 1.7E-06 3.7E-11 90.9 23.8 308 51-477 102-426 (428)
72 PRK09669 putative symporter Ya 98.8 9.1E-06 2E-10 85.9 29.3 61 367-427 319-386 (444)
73 PLN00028 nitrate transmembrane 98.7 5.3E-06 1.1E-10 88.7 25.4 81 53-140 125-214 (476)
74 TIGR00712 glpT glycerol-3-phos 98.7 1.4E-05 3.1E-10 84.3 28.2 82 52-139 118-200 (438)
75 TIGR00903 2A0129 major facilit 98.7 2.2E-05 4.8E-10 81.0 28.7 82 51-139 78-159 (368)
76 PRK09556 uhpT sugar phosphate 98.6 2E-05 4.3E-10 83.9 27.5 81 51-137 121-204 (467)
77 PRK10406 alpha-ketoglutarate t 98.6 5.8E-05 1.3E-09 79.4 30.5 79 52-136 124-210 (432)
78 TIGR00887 2A0109 phosphate:H+ 98.6 4.7E-05 1E-09 81.9 29.9 83 51-139 114-219 (502)
79 KOG2532 Permease of the major 98.6 5E-06 1.1E-10 88.1 21.8 107 3-141 105-212 (466)
80 TIGR00897 2A0118 polyol permea 98.6 0.0001 2.2E-09 76.8 31.5 71 53-129 106-177 (402)
81 TIGR00882 2A0105 oligosacchari 98.6 2E-05 4.3E-10 81.8 25.9 76 55-139 102-177 (396)
82 PRK11462 putative transporter; 98.6 4.9E-05 1.1E-09 80.9 28.6 86 51-141 108-200 (460)
83 COG2814 AraJ Arabinose efflux 98.6 6.2E-05 1.3E-09 77.4 27.9 87 51-143 100-186 (394)
84 PRK09952 shikimate transporter 98.6 7.9E-05 1.7E-09 78.7 29.7 76 54-135 127-210 (438)
85 KOG1330 Sugar transporter/spin 98.6 2.5E-07 5.5E-12 95.0 10.1 86 50-141 119-205 (493)
86 TIGR02718 sider_RhtX_FptX side 98.5 5.8E-05 1.3E-09 78.1 27.3 56 372-427 308-364 (390)
87 PF03209 PUCC: PUCC protein; 98.5 0.00021 4.6E-09 73.2 29.9 301 4-428 53-362 (403)
88 TIGR00896 CynX cyanate transpo 98.5 4.5E-05 9.8E-10 77.8 25.4 78 53-137 88-167 (355)
89 PRK15075 citrate-proton sympor 98.5 6.4E-05 1.4E-09 79.2 27.2 73 54-132 119-199 (434)
90 TIGR02332 HpaX 4-hydroxyphenyl 98.5 9E-05 1.9E-09 77.6 27.7 82 52-139 96-183 (412)
91 TIGR00885 fucP L-fucose:H+ sym 98.5 5.9E-05 1.3E-09 79.0 25.5 107 3-140 70-202 (410)
92 COG2271 UhpC Sugar phosphate p 98.5 2.1E-05 4.6E-10 80.3 20.6 90 51-146 116-208 (448)
93 TIGR01272 gluP glucose/galacto 98.4 0.00017 3.7E-09 72.6 25.0 87 49-141 7-109 (310)
94 PRK10133 L-fucose transporter; 98.3 0.00055 1.2E-08 72.3 27.2 85 3-118 93-177 (438)
95 COG2211 MelB Na+/melibiose sym 98.3 0.00038 8.2E-09 73.1 24.9 63 50-117 110-172 (467)
96 PF03092 BT1: BT1 family; Int 98.2 3.3E-05 7E-10 81.6 15.9 85 54-142 88-172 (433)
97 KOG2504 Monocarboxylate transp 98.1 0.0031 6.7E-08 67.9 27.1 95 367-478 388-482 (509)
98 TIGR00886 2A0108 nitrite extru 98.1 0.0003 6.6E-09 71.6 18.8 77 52-135 91-178 (366)
99 PF11700 ATG22: Vacuole efflux 98.0 0.034 7.3E-07 59.5 32.9 57 374-430 387-443 (477)
100 KOG2533 Permease of the major 97.9 0.0061 1.3E-07 65.2 26.7 83 51-139 133-221 (495)
101 PF03825 Nuc_H_symport: Nucleo 97.9 0.014 3E-07 61.0 28.4 92 371-474 305-397 (400)
102 TIGR00805 oat sodium-independe 97.9 0.00088 1.9E-08 74.2 20.1 86 51-142 171-278 (633)
103 KOG3764 Vesicular amine transp 97.9 0.0015 3.2E-08 66.6 19.5 87 51-142 158-244 (464)
104 TIGR00891 2A0112 putative sial 97.9 0.00042 9E-09 71.3 16.4 110 284-427 51-160 (405)
105 PF01306 LacY_symp: LacY proto 97.9 0.0035 7.6E-08 65.2 22.7 89 365-471 310-399 (412)
106 PF07690 MFS_1: Major Facilita 97.9 0.0004 8.7E-09 69.9 15.7 132 284-467 36-167 (352)
107 KOG1330 Sugar transporter/spin 97.8 1.4E-05 3.1E-10 82.4 4.2 141 284-476 72-213 (493)
108 TIGR02332 HpaX 4-hydroxyphenyl 97.8 0.00083 1.8E-08 70.3 17.7 82 323-427 75-156 (412)
109 TIGR00710 efflux_Bcr_CflA drug 97.8 0.0007 1.5E-08 69.3 16.3 110 284-427 44-153 (385)
110 PRK03545 putative arabinose tr 97.8 0.00083 1.8E-08 69.5 17.0 87 318-427 71-157 (390)
111 PF06609 TRI12: Fungal trichot 97.8 0.0087 1.9E-07 65.2 25.0 84 51-141 130-213 (599)
112 COG0738 FucP Fucose permease [ 97.8 0.026 5.5E-07 57.9 26.4 86 3-119 80-165 (422)
113 TIGR00893 2A0114 d-galactonate 97.8 0.00047 1E-08 70.1 14.5 136 284-471 33-168 (399)
114 PRK11551 putative 3-hydroxyphe 97.7 0.0017 3.6E-08 67.4 18.4 109 284-426 54-162 (406)
115 TIGR00900 2A0121 H+ Antiporter 97.7 0.0014 3E-08 66.2 17.0 115 284-427 38-152 (365)
116 COG2814 AraJ Arabinose efflux 97.7 0.0015 3.3E-08 67.2 17.0 138 284-473 52-189 (394)
117 PRK10473 multidrug efflux syst 97.7 0.0014 3.1E-08 67.7 16.5 61 366-426 90-150 (392)
118 PRK10213 nepI ribonucleoside t 97.6 0.0037 8.1E-08 65.0 18.6 108 286-427 61-168 (394)
119 TIGR00711 efflux_EmrB drug res 97.6 0.0019 4.2E-08 68.5 16.6 110 284-427 41-150 (485)
120 PRK11663 regulatory protein Uh 97.6 0.0023 5.1E-08 67.3 17.0 109 285-427 63-171 (434)
121 PRK09874 drug efflux system pr 97.6 0.0047 1E-07 63.9 18.9 108 285-427 59-166 (408)
122 PRK14995 methyl viologen resis 97.6 0.0038 8.3E-08 67.0 18.7 110 284-427 45-155 (495)
123 PRK05122 major facilitator sup 97.6 0.00045 9.9E-09 71.5 10.8 95 53-153 303-397 (399)
124 TIGR00895 2A0115 benzoate tran 97.5 0.00071 1.5E-08 69.3 11.8 83 322-427 83-165 (398)
125 PRK10054 putative transporter; 97.5 0.0039 8.5E-08 64.8 17.2 110 284-427 47-156 (395)
126 TIGR00880 2_A_01_02 Multidrug 97.5 0.0067 1.5E-07 51.7 15.9 61 367-427 51-111 (141)
127 PRK10091 MFS transport protein 97.5 0.0048 1E-07 63.7 17.5 110 284-427 42-151 (382)
128 PRK15034 nitrate/nitrite trans 97.5 0.18 4E-06 53.5 29.5 59 51-116 127-185 (462)
129 TIGR00881 2A0104 phosphoglycer 97.5 0.00069 1.5E-08 68.7 10.6 107 284-424 34-141 (379)
130 PRK15403 multidrug efflux syst 97.5 0.0033 7.2E-08 65.8 15.8 106 322-468 82-187 (413)
131 TIGR00880 2_A_01_02 Multidrug 97.5 0.0011 2.3E-08 56.8 10.1 85 52-142 51-135 (141)
132 COG2807 CynX Cyanate permease 97.4 0.12 2.5E-06 52.5 25.0 85 51-142 98-183 (395)
133 TIGR01299 synapt_SV2 synaptic 97.4 0.0063 1.4E-07 68.3 17.8 109 284-426 206-314 (742)
134 KOG2615 Permease of the major 97.4 0.013 2.9E-07 59.5 18.0 56 370-425 355-410 (451)
135 PRK11646 multidrug resistance 97.4 0.007 1.5E-07 63.1 17.0 83 322-427 77-159 (400)
136 TIGR00885 fucP L-fucose:H+ sym 97.4 0.011 2.4E-07 61.9 18.3 113 284-427 42-154 (410)
137 PRK03699 putative transporter; 97.4 0.011 2.3E-07 61.4 17.9 107 286-426 48-154 (394)
138 PRK10077 xylE D-xylose transpo 97.3 0.0064 1.4E-07 64.5 16.5 118 286-425 61-178 (479)
139 KOG3764 Vesicular amine transp 97.3 0.0017 3.7E-08 66.1 11.0 115 324-479 139-254 (464)
140 TIGR00879 SP MFS transporter, 97.3 0.0028 6E-08 66.4 13.3 109 284-423 75-183 (481)
141 KOG0569 Permease of the major 97.3 0.038 8.3E-07 58.7 21.3 86 52-143 116-203 (485)
142 TIGR00805 oat sodium-independe 97.3 0.0017 3.7E-08 71.9 11.7 133 284-427 72-232 (633)
143 PRK15402 multidrug efflux syst 97.3 0.013 2.9E-07 60.8 17.8 60 367-426 101-160 (406)
144 PRK12307 putative sialic acid 97.3 0.013 2.9E-07 61.1 17.8 109 284-426 57-165 (426)
145 PRK09556 uhpT sugar phosphate 97.3 0.0028 6.2E-08 67.4 12.8 89 319-425 92-180 (467)
146 KOG3762 Predicted transporter 97.3 0.0014 3.1E-08 69.0 9.8 119 318-478 433-553 (618)
147 TIGR00890 2A0111 Oxalate/Forma 97.2 0.01 2.2E-07 60.0 15.9 135 284-471 42-176 (377)
148 PRK03633 putative MFS family t 97.2 0.026 5.7E-07 58.1 19.0 109 284-426 45-153 (381)
149 PRK10504 putative transporter; 97.2 0.018 3.9E-07 61.1 18.3 62 366-427 97-158 (471)
150 TIGR00886 2A0108 nitrite extru 97.2 0.022 4.7E-07 57.9 18.1 107 284-424 41-147 (366)
151 TIGR00894 2A0114euk Na(+)-depe 97.2 0.0039 8.5E-08 66.1 12.7 62 366-427 130-191 (465)
152 PRK11102 bicyclomycin/multidru 97.2 0.024 5.2E-07 57.9 18.1 83 322-427 57-139 (377)
153 KOG1237 H+/oligopeptide sympor 97.2 0.0026 5.6E-08 69.2 10.9 239 5-340 35-275 (571)
154 TIGR00924 yjdL_sub1_fam amino 97.2 0.0071 1.5E-07 64.7 14.2 115 321-476 79-196 (475)
155 PRK09705 cynX putative cyanate 97.1 0.011 2.4E-07 61.3 15.3 108 284-426 48-155 (393)
156 cd06174 MFS The Major Facilita 97.1 0.011 2.4E-07 59.0 14.4 110 284-427 38-147 (352)
157 PRK12382 putative transporter; 97.1 0.0027 5.8E-08 65.7 9.9 84 54-143 304-387 (392)
158 TIGR00889 2A0110 nucleoside tr 97.1 0.003 6.4E-08 66.3 10.3 85 52-142 308-399 (418)
159 PRK10489 enterobactin exporter 97.1 0.017 3.6E-07 60.3 15.9 115 284-427 56-170 (417)
160 PRK03893 putative sialic acid 97.0 0.039 8.5E-07 58.8 18.8 82 323-427 87-168 (496)
161 PTZ00207 hypothetical protein; 97.0 0.031 6.7E-07 61.1 17.7 121 319-476 89-209 (591)
162 PRK11273 glpT sn-glycerol-3-ph 97.0 0.027 5.8E-07 59.7 17.0 82 322-422 94-175 (452)
163 KOG0255 Synaptic vesicle trans 97.0 0.72 1.6E-05 49.7 29.1 81 51-140 170-250 (521)
164 TIGR00898 2A0119 cation transp 96.9 0.0063 1.4E-07 65.2 11.6 108 284-425 131-238 (505)
165 TIGR00901 2A0125 AmpG-related 96.9 0.036 7.9E-07 56.3 16.6 63 365-427 81-143 (356)
166 TIGR00712 glpT glycerol-3-phos 96.9 0.024 5.2E-07 59.7 15.5 83 324-425 94-176 (438)
167 PRK11902 ampG muropeptide tran 96.9 0.027 6E-07 58.5 15.3 107 299-427 47-154 (402)
168 KOG0254 Predicted transporter 96.9 0.17 3.8E-06 54.5 21.8 104 3-140 121-225 (513)
169 COG2270 Permeases of the major 96.8 0.74 1.6E-05 47.8 24.6 101 302-431 305-405 (438)
170 PRK11652 emrD multidrug resist 96.8 0.064 1.4E-06 55.4 17.3 61 367-427 96-156 (394)
171 TIGR00806 rfc RFC reduced fola 96.8 1 2.2E-05 47.9 27.1 82 51-140 114-198 (511)
172 KOG3626 Organic anion transpor 96.7 0.16 3.5E-06 56.2 20.4 88 51-144 236-342 (735)
173 PTZ00207 hypothetical protein; 96.7 1.2 2.7E-05 48.8 26.9 109 3-142 93-203 (591)
174 COG2223 NarK Nitrate/nitrite t 96.7 0.62 1.4E-05 48.2 23.0 81 58-146 111-194 (417)
175 PRK11043 putative transporter; 96.7 0.077 1.7E-06 54.9 17.2 82 322-426 72-153 (401)
176 TIGR00887 2A0109 phosphate:H+ 96.7 0.057 1.2E-06 58.0 16.4 61 366-426 114-174 (502)
177 TIGR00892 2A0113 monocarboxyla 96.7 0.046 1E-06 58.0 15.3 108 322-471 85-193 (455)
178 PRK10133 L-fucose transporter; 96.6 0.15 3.3E-06 53.8 19.0 110 285-425 66-175 (438)
179 KOG2563 Permease of the major 96.6 0.099 2.1E-06 54.4 16.3 101 368-483 360-461 (480)
180 PRK11010 ampG muropeptide tran 96.6 0.2 4.3E-06 53.8 19.7 107 299-427 60-167 (491)
181 KOG3098 Uncharacterized conser 96.5 0.52 1.1E-05 49.8 21.8 162 284-479 279-442 (461)
182 KOG3626 Organic anion transpor 96.5 0.014 2.9E-07 64.5 10.1 153 319-478 160-349 (735)
183 PF03137 OATP: Organic Anion T 96.5 0.00041 8.8E-09 75.1 -1.6 107 319-425 66-199 (539)
184 KOG2533 Permease of the major 96.5 0.057 1.2E-06 57.8 14.6 95 367-473 134-228 (495)
185 KOG2816 Predicted transporter 96.5 0.04 8.6E-07 58.5 13.4 85 323-431 310-394 (463)
186 TIGR00903 2A0129 major facilit 96.5 0.11 2.5E-06 53.5 16.4 88 366-472 78-165 (368)
187 TIGR01301 GPH_sucrose GPH fami 96.5 0.055 1.2E-06 57.7 14.2 58 368-425 115-174 (477)
188 TIGR00897 2A0118 polyol permea 96.4 0.23 5.1E-06 51.5 18.2 112 284-425 52-164 (402)
189 PRK11195 lysophospholipid tran 96.3 0.13 2.7E-06 53.5 15.5 107 284-427 42-148 (393)
190 PRK10207 dipeptide/tripeptide 96.3 0.074 1.6E-06 57.1 14.0 87 319-427 79-167 (489)
191 TIGR00806 rfc RFC reduced fola 96.3 0.17 3.7E-06 53.7 16.1 83 320-426 91-173 (511)
192 PLN00028 nitrate transmembrane 96.2 0.15 3.2E-06 54.5 16.2 79 322-424 102-180 (476)
193 PRK06814 acylglycerophosphoeth 96.2 0.13 2.8E-06 61.1 16.9 63 365-427 106-168 (1140)
194 PRK08633 2-acyl-glycerophospho 96.2 0.2 4.4E-06 59.4 18.5 62 366-427 102-163 (1146)
195 PRK09584 tppB putative tripept 96.1 0.16 3.4E-06 54.8 15.5 117 321-477 88-206 (500)
196 TIGR00883 2A0106 metabolite-pr 96.0 0.047 1E-06 55.6 10.8 92 321-427 65-156 (394)
197 TIGR00899 2A0120 sugar efflux 95.9 0.33 7.1E-06 49.3 16.6 90 367-474 87-178 (375)
198 KOG2532 Permease of the major 95.9 0.11 2.5E-06 55.2 13.1 117 319-473 101-217 (466)
199 PRK10642 proline/glycine betai 95.8 0.15 3.3E-06 54.6 13.9 108 297-426 70-177 (490)
200 PRK10406 alpha-ketoglutarate t 95.8 0.2 4.4E-06 52.5 14.7 108 297-426 76-183 (432)
201 PF03209 PUCC: PUCC protein; 95.8 0.68 1.5E-05 47.9 17.6 93 323-425 52-147 (403)
202 TIGR00896 CynX cyanate transpo 95.7 0.3 6.4E-06 49.6 15.0 107 284-426 39-145 (355)
203 PRK09528 lacY galactoside perm 95.7 0.046 9.9E-07 57.1 9.0 83 54-142 317-400 (420)
204 COG2271 UhpC Sugar phosphate p 95.6 0.25 5.3E-06 51.2 13.5 84 318-424 91-174 (448)
205 PF06609 TRI12: Fungal trichot 95.6 0.58 1.3E-05 51.2 17.2 121 270-426 69-189 (599)
206 PRK09952 shikimate transporter 95.5 0.25 5.5E-06 52.0 13.8 109 296-426 76-184 (438)
207 PF05977 MFS_3: Transmembrane 95.3 0.75 1.6E-05 49.9 17.1 116 283-427 48-163 (524)
208 PRK15011 sugar efflux transpor 95.3 0.88 1.9E-05 47.0 17.1 89 367-473 105-195 (393)
209 TIGR01272 gluP glucose/galacto 95.2 0.17 3.7E-06 50.8 11.0 63 365-427 8-70 (310)
210 KOG2325 Predicted transporter/ 95.0 0.39 8.4E-06 51.0 13.1 58 372-429 393-450 (488)
211 TIGR00792 gph sugar (Glycoside 94.9 0.15 3.2E-06 53.3 10.1 71 53-123 312-383 (437)
212 PRK15075 citrate-proton sympor 94.6 1.4 3E-05 46.3 16.6 104 301-426 73-176 (434)
213 TIGR00902 2A0127 phenyl propri 94.6 0.24 5.1E-06 51.1 10.5 83 52-142 293-376 (382)
214 KOG2325 Predicted transporter/ 94.5 0.34 7.4E-06 51.5 11.3 155 284-476 75-233 (488)
215 PRK15462 dipeptide/tripeptide 94.5 1.1 2.4E-05 48.2 15.3 115 322-476 77-193 (493)
216 KOG0254 Predicted transporter 94.4 0.45 9.8E-06 51.3 12.3 106 283-422 92-197 (513)
217 TIGR00882 2A0105 oligosacchari 94.2 0.86 1.9E-05 47.0 13.7 55 370-426 102-156 (396)
218 PRK09669 putative symporter Ya 94.2 0.31 6.7E-06 51.4 10.4 72 52-123 319-391 (444)
219 PRK15034 nitrate/nitrite trans 94.2 5.8 0.00013 42.2 19.8 92 303-420 89-180 (462)
220 PRK09848 glucuronide transport 94.0 0.31 6.7E-06 51.4 10.0 90 52-141 319-424 (448)
221 COG2807 CynX Cyanate permease 93.9 2.4 5.2E-05 43.3 15.2 117 318-476 74-190 (395)
222 PF00854 PTR2: POT family; In 93.7 0.44 9.4E-06 49.1 10.2 124 323-478 3-129 (372)
223 KOG4686 Predicted sugar transp 93.5 7.6 0.00016 38.6 17.4 87 373-473 358-444 (459)
224 PRK11128 putative 3-phenylprop 93.4 1.2 2.7E-05 45.7 13.0 60 366-427 93-152 (382)
225 COG0738 FucP Fucose permease [ 93.2 3.9 8.4E-05 42.3 15.7 88 318-425 75-162 (422)
226 PF00083 Sugar_tr: Sugar (and 93.2 5E-05 1.1E-09 80.1 -20.6 81 51-137 101-184 (451)
227 TIGR02718 sider_RhtX_FptX side 92.9 4.6 9.9E-05 41.5 16.4 86 367-470 97-182 (390)
228 KOG0569 Permease of the major 92.8 2.3 5E-05 45.4 14.0 59 366-424 115-173 (485)
229 PF05978 UNC-93: Ion channel r 92.7 3.6 7.7E-05 37.0 13.2 63 365-427 87-149 (156)
230 PF11700 ATG22: Vacuole efflux 92.5 1.2 2.6E-05 47.7 11.5 85 52-142 380-465 (477)
231 PF13347 MFS_2: MFS/sugar tran 92.3 0.84 1.8E-05 47.8 10.1 94 4-123 293-387 (428)
232 PF06813 Nodulin-like: Nodulin 90.9 6.4 0.00014 38.3 13.7 122 319-476 64-185 (250)
233 TIGR00939 2a57 Equilibrative N 90.4 2.6 5.6E-05 44.6 11.3 125 318-472 72-196 (437)
234 KOG0255 Synaptic vesicle trans 90.4 3.2 7E-05 44.6 12.4 86 365-471 169-254 (521)
235 PF02487 CLN3: CLN3 protein; 89.7 4.1 8.9E-05 42.4 11.8 82 318-427 86-167 (402)
236 KOG3574 Acetyl-CoA transporter 89.0 13 0.00029 38.4 14.3 111 368-478 370-494 (510)
237 PRK10429 melibiose:sodium symp 88.9 2.7 5.8E-05 44.8 10.2 72 52-123 324-396 (473)
238 PF03092 BT1: BT1 family; Int 88.1 8.9 0.00019 40.4 13.4 83 324-426 62-147 (433)
239 PF03825 Nuc_H_symport: Nucleo 87.8 4.1 8.9E-05 42.5 10.5 83 56-144 305-394 (400)
240 PRK11462 putative transporter; 87.8 20 0.00044 38.0 16.0 58 367-424 109-167 (460)
241 TIGR00769 AAA ADP/ATP carrier 86.8 48 0.001 35.4 20.6 54 372-425 381-435 (472)
242 KOG4686 Predicted sugar transp 84.8 2.8 6E-05 41.5 6.7 77 57-139 357-436 (459)
243 KOG2615 Permease of the major 83.5 6.7 0.00015 40.5 9.0 81 324-428 101-181 (451)
244 PF03137 OATP: Organic Anion T 82.9 0.32 7E-06 52.8 -0.6 92 51-148 140-253 (539)
245 KOG2504 Monocarboxylate transp 82.3 1.8 3.9E-05 46.7 4.9 87 53-145 389-476 (509)
246 COG2223 NarK Nitrate/nitrite t 81.3 24 0.00051 36.8 12.2 156 277-477 43-198 (417)
247 PF02487 CLN3: CLN3 protein; 78.0 93 0.002 32.5 23.4 62 366-427 334-395 (402)
248 COG2211 MelB Na+/melibiose sym 78.0 81 0.0017 33.7 15.3 102 365-480 110-212 (467)
249 PF01891 CbiM: Cobalt uptake s 77.1 42 0.00092 31.4 11.9 100 286-398 105-204 (205)
250 KOG0252 Inorganic phosphate tr 72.7 5.8 0.00013 41.9 5.0 153 280-467 81-237 (538)
251 PF03219 TLC: TLC ATP/ADP tran 70.0 1.1E+02 0.0024 32.9 14.2 28 92-119 178-205 (491)
252 KOG1479 Nucleoside transporter 68.6 1.1E+02 0.0024 32.0 13.2 86 367-470 117-202 (406)
253 PRK07331 cobalt transport prot 67.6 73 0.0016 32.2 11.5 106 288-400 108-220 (322)
254 KOG2816 Predicted transporter 67.1 1.5E+02 0.0031 31.7 14.3 100 290-426 72-171 (463)
255 TIGR00769 AAA ADP/ATP carrier 66.9 1.8E+02 0.004 31.1 19.4 49 379-427 137-189 (472)
256 PF03219 TLC: TLC ATP/ADP tran 66.6 1.9E+02 0.0041 31.1 17.9 54 375-428 148-205 (491)
257 PF00083 Sugar_tr: Sugar (and 66.4 0.11 2.4E-06 54.6 -9.4 61 366-426 101-161 (451)
258 COG3202 ATP/ADP translocase [E 66.4 1.9E+02 0.0041 31.0 19.5 56 367-422 396-452 (509)
259 PF06813 Nodulin-like: Nodulin 65.3 1.4E+02 0.003 29.0 12.7 61 2-83 67-127 (250)
260 KOG0637 Sucrose transporter an 63.4 15 0.00033 38.7 5.9 99 4-118 105-203 (498)
261 COG3104 PTR2 Dipeptide/tripept 62.6 20 0.00044 38.2 6.7 126 319-483 90-217 (498)
262 PF01306 LacY_symp: LacY proto 57.1 1.3E+02 0.0029 31.5 11.6 25 284-308 47-71 (412)
263 KOG0637 Sucrose transporter an 57.0 51 0.0011 35.0 8.3 165 238-424 32-200 (498)
264 COG2270 Permeases of the major 53.8 54 0.0012 34.4 7.9 83 54-142 343-426 (438)
265 TIGR00788 fbt folate/biopterin 53.7 29 0.00062 37.0 6.3 68 59-132 358-430 (468)
266 PRK08319 cobalt transport prot 52.0 1.9E+02 0.0041 27.6 10.9 32 371-402 183-214 (224)
267 PF06123 CreD: Inner membrane 49.2 3.1E+02 0.0068 29.0 12.8 19 326-344 300-318 (430)
268 PLN02351 cytochromes b561 fami 48.5 2.6E+02 0.0056 27.0 13.7 96 390-496 141-242 (242)
269 PRK11715 inner membrane protei 47.7 3.1E+02 0.0067 29.0 12.5 48 324-391 304-351 (436)
270 PF14007 YtpI: YtpI-like prote 47.1 69 0.0015 25.8 5.9 69 79-153 18-86 (89)
271 PF06645 SPC12: Microsomal sig 46.9 76 0.0016 24.7 6.0 54 93-149 7-60 (76)
272 KOG4255 Uncharacterized conser 46.6 3.4E+02 0.0073 27.8 16.5 94 373-476 118-215 (439)
273 TIGR00123 cbiM cobalamin biosy 45.0 2.8E+02 0.006 26.3 11.0 101 286-400 108-212 (214)
274 PF01770 Folate_carrier: Reduc 44.5 4E+02 0.0086 28.0 14.2 62 365-427 92-153 (412)
275 KOG0252 Inorganic phosphate tr 43.8 65 0.0014 34.3 6.7 74 73-148 63-136 (538)
276 PRK06265 cobalt transport prot 42.0 2.9E+02 0.0063 25.7 11.1 95 288-401 102-198 (199)
277 PRK11909 cobalt transport prot 41.7 3.2E+02 0.007 26.1 12.1 36 366-401 182-218 (230)
278 COG0477 ProP Permeases of the 41.1 87 0.0019 29.2 7.0 77 52-133 94-173 (338)
279 PF15050 SCIMP: SCIMP protein 39.4 19 0.00041 30.4 1.6 9 451-459 6-14 (133)
280 KOG4332 Predicted sugar transp 38.9 4.1E+02 0.0089 26.5 14.4 43 371-413 348-390 (454)
281 PF05631 DUF791: Protein of un 38.4 4.6E+02 0.0099 26.9 16.0 91 50-142 119-213 (354)
282 KOG3098 Uncharacterized conser 38.3 2.6E+02 0.0056 29.9 10.3 65 366-430 101-165 (461)
283 PF01733 Nucleoside_tran: Nucl 38.3 10 0.00023 37.9 0.0 82 375-474 5-86 (309)
284 KOG3574 Acetyl-CoA transporter 38.2 2.3E+02 0.0051 29.6 9.4 151 290-468 77-232 (510)
285 PF06027 DUF914: Eukaryotic pr 37.9 4.5E+02 0.0098 26.7 11.7 24 453-476 288-311 (334)
286 COG3202 ATP/ADP translocase [E 36.8 5.7E+02 0.012 27.6 17.7 53 375-427 152-208 (509)
287 KOG4332 Predicted sugar transp 35.1 1.2E+02 0.0026 30.2 6.5 81 53-139 345-425 (454)
288 KOG4112 Signal peptidase subun 34.4 1.4E+02 0.003 24.2 5.6 52 95-149 24-75 (101)
289 PF06679 DUF1180: Protein of u 32.2 60 0.0013 29.3 3.8 27 451-477 95-121 (163)
290 KOG2927 Membrane component of 31.9 98 0.0021 31.4 5.5 33 391-426 205-237 (372)
291 PF13000 Acatn: Acetyl-coenzym 31.8 3.4E+02 0.0073 29.4 9.8 124 292-427 51-178 (544)
292 PF01102 Glycophorin_A: Glycop 31.5 56 0.0012 28.0 3.3 25 453-477 70-94 (122)
293 COG0477 ProP Permeases of the 30.3 4.3E+02 0.0094 24.2 10.6 60 367-426 94-155 (338)
294 PF15471 TMEM171: Transmembran 30.0 1.1E+02 0.0024 29.8 5.3 55 437-491 136-199 (319)
295 PF03419 Peptidase_U4: Sporula 29.1 5.7E+02 0.012 25.2 14.7 33 299-334 14-46 (293)
296 PF11368 DUF3169: Protein of u 28.9 62 0.0013 31.3 3.7 14 468-481 68-81 (248)
297 PF07857 DUF1632: CEO family ( 28.5 1.5E+02 0.0033 28.9 6.2 30 395-424 71-100 (254)
298 KOG4536 Predicted membrane pro 27.8 6E+02 0.013 25.1 12.2 105 366-482 115-221 (347)
299 KOG2563 Permease of the major 27.5 7.8E+02 0.017 26.3 11.9 47 372-418 145-191 (480)
300 COG5336 Uncharacterized protei 26.2 3.6E+02 0.0079 22.6 7.0 29 395-423 34-62 (116)
301 PF03988 DUF347: Repeat of Unk 25.5 1.7E+02 0.0037 21.1 4.6 27 99-125 2-29 (55)
302 PRK13108 prolipoprotein diacyl 25.1 3.6E+02 0.0077 28.8 8.7 22 401-422 222-243 (460)
303 PHA03049 IMV membrane protein; 24.8 1.2E+02 0.0026 22.8 3.6 38 455-492 7-44 (68)
304 COG0682 Lgt Prolipoprotein dia 24.7 3.2E+02 0.0069 27.2 7.7 49 371-420 189-237 (287)
305 PF07672 MFS_Mycoplasma: Mycop 23.9 53 0.0012 32.1 2.1 70 399-481 2-71 (267)
306 PF13314 DUF4083: Domain of un 23.6 1.1E+02 0.0024 22.4 3.2 31 453-483 8-38 (58)
307 PF05024 Gpi1: N-acetylglucosa 23.4 5.6E+02 0.012 23.7 8.7 44 449-492 124-172 (189)
308 PF12606 RELT: Tumour necrosis 23.1 1.1E+02 0.0024 21.8 3.0 18 466-483 18-35 (50)
309 PF12670 DUF3792: Protein of u 22.8 3.8E+02 0.0081 22.5 6.9 45 93-137 36-81 (116)
310 PRK03612 spermidine synthase; 22.4 2.5E+02 0.0055 30.4 7.2 51 94-144 145-197 (521)
311 PF13000 Acatn: Acetyl-coenzym 22.2 8.7E+02 0.019 26.4 10.8 61 370-430 408-469 (544)
312 PF06963 FPN1: Ferroportin1 (F 21.7 9.6E+02 0.021 25.3 20.4 61 365-425 354-414 (432)
313 TIGR02230 ATPase_gene1 F0F1-AT 21.3 3.5E+02 0.0076 22.3 6.1 35 105-139 54-92 (100)
314 KOG0253 Synaptic vesicle trans 21.0 8.8E+02 0.019 25.6 10.0 78 54-139 168-246 (528)
315 PF05978 UNC-93: Ion channel r 20.6 4.7E+02 0.01 23.3 7.4 59 52-116 89-147 (156)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-79 Score=655.84 Aligned_cols=461 Identities=43% Similarity=0.717 Sum_probs=417.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccC
Q 010840 2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 81 (499)
Q Consensus 2 ~~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~ 81 (499)
.||.+++++|++|+.+|++++..|.++|+ .|.. ......|++++..+...+|.+|+++++|+|++|||+.++++|||
T Consensus 105 ~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~~~-~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf 181 (571)
T KOG1237|consen 105 FTINIGSLISLLGLFGLTLSAMIPALLPF--MCKF-KPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF 181 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cccC-CCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence 47899999999999999999999999997 6510 01145799999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHH
Q 010840 82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~ 161 (499)
|+.++++++.+.++|||||+.+|+|.+++.++..|+|++.||.++|++++++|++++++|+.|++.|++++|.|+|++.+
T Consensus 182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i 261 (571)
T KOG1237|consen 182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRI 261 (571)
T ss_pred CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeecccccc---CCCCCccccccchhhHhH
Q 010840 162 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVK 238 (499)
Q Consensus 162 ~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~---~~~~~~~~~~~~~ve~~k 238 (499)
.+|++++++|++.+.+.+... + +. .........++++++++|+|+++...+. ...+||++|+++||||+|
T Consensus 262 ~~Vlvaa~~k~~~~~~~~~~~-~-~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K 334 (571)
T KOG1237|consen 262 GQVLVAAAFKRKAVVSLDPEE-L-YY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVK 334 (571)
T ss_pred HHHHHHHHHHHhccCCCcchh-c-cc-----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhh
Confidence 999999999998877765432 1 10 1112223356788999999998765432 125889999999999999
Q ss_pred HhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccC-eeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 010840 239 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRG 317 (499)
Q Consensus 239 ~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g-~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~ 317 (499)
.++|++|+|++.++||+++.|+.|.++.|+.+|||++++ |++|+++++.+..+.+++++|++|++++|+.||.++++++
T Consensus 335 ~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~ 414 (571)
T KOG1237|consen 335 AVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFG 414 (571)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCC
Confidence 999999999999999999999999999999999999997 9999999999999999999999999999999999998888
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
+++++||++|+++++++|.+++++|.+|++.+.++ ..++++ +|++||+|||+++|+||+|.+++++||+|+|||
T Consensus 415 ~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~-----~~~~~~-mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP 488 (571)
T KOG1237|consen 415 ITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSL-----LVETNP-MSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAP 488 (571)
T ss_pred CChhheeeccchHHHHHHHHHHHHHHHHhhhhhhc-----cCCCCC-eeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCC
Confidence 99999999999999999999999999999988651 112466 999999999999999999999999999999999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccc-ccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~-~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
++|||+.+++|+++.|+|++++.++++++...++ + .++|++ +|+|++|+|+|||+++.++.+|.+.|..++++|+
T Consensus 489 ~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~ 564 (571)
T KOG1237|consen 489 ESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYD 564 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeee
Confidence 9999999999999999999999999999998763 1 357999 9999999999999999999999999999999999
Q ss_pred cccccc
Q 010840 477 YRSEQK 482 (499)
Q Consensus 477 ~~~~~~ 482 (499)
+++.++
T Consensus 565 ~~~~~~ 570 (571)
T KOG1237|consen 565 YKDDKD 570 (571)
T ss_pred eccccC
Confidence 986554
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-54 Score=440.98 Aligned_cols=389 Identities=16% Similarity=0.205 Sum_probs=303.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
||++|.+++++|+++|+.++. .....++++|.+|++|+|++|||++++++|||+
T Consensus 94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence 789999999999999998751 134589999999999999999999999999999
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccC--CCCChHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR 160 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~--p~g~pl~~ 160 (499)
++||| ||..|+.||+++|+|++++|++++++++++||+.+|++++++|.+++++|+++++++.... |+.+|...
T Consensus 148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~ 223 (498)
T COG3104 148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF 223 (498)
T ss_pred CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence 99997 7999999999999999999999999999999999999999999999999999999987763 33344321
Q ss_pred ------HHHHHHHHHhh--ccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccc
Q 010840 161 ------VAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVT 232 (499)
Q Consensus 161 ------~~~vl~~a~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~ 232 (499)
...++...++. ......+ .+... . ... .. .....+... ...| +.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~------~---~~~-----~i--~~~~~~~~~---~~~~---~~~ 276 (498)
T COG3104 224 NFLLPVLGGLVVMILAALLTLLLNQN-----TFSGV------L---LVI-----SI--LIAIIYFAE---AFRS---PKV 276 (498)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHH------H---HHH-----HH--HHHHHHHHH---Hhcc---Ccc
Confidence 11111111000 0000000 00000 0 000 00 000000000 0111 223
Q ss_pred hhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 010840 233 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRI 311 (499)
Q Consensus 233 ~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~ 311 (499)
+ ||+||+++++|+++..++||++|+|+.|+++.|++ +.|+++.|+++|++|+|++||++|+++.|+++++|+|+.++.
T Consensus 277 ~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~ 355 (498)
T COG3104 277 F-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN 355 (498)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC
Confidence 4 89999999999999999999999999999999998 678886779999999999999999999999999999988874
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840 312 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF 391 (499)
Q Consensus 312 ~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef 391 (499)
++ +++..|+++|++++++++++........ +. +... +|+||++++|+++++||+|++|+++|+
T Consensus 356 -~~---ps~~~KFalGl~l~g~~fl~l~~~~~~~---~~---------~~~~-~s~~~lil~y~l~s~gEL~iSpvGLs~ 418 (498)
T COG3104 356 -KQ---PSTPIKFALGLILAGLGFLILLLAGIWF---GG---------PSGL-VSVWWLVLSYVLQSFGELFISPVGLSM 418 (498)
T ss_pred -CC---CCcchHHHHHHHHHHHHHHHHHHHHHhh---cC---------CCCC-cCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 34 8999999999999999999988775431 11 0123 889999999999999999999999999
Q ss_pred HHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 392 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 392 ~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
++++||++++|.+||+|+++.+.|+.+++.+...... + ++ -.+..+.-.+|+.++..+++..+++...
T Consensus 419 ~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~------~~-----~~~~~~~~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 419 VTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T------DP-----AYTAFIEGRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c------ch-----hhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763110 1 00 1111233458999999999999999999
Q ss_pred hcccccc
Q 010840 472 AYRYKYR 478 (499)
Q Consensus 472 ~~~y~~~ 478 (499)
+++.++.
T Consensus 487 ~~~~~r~ 493 (498)
T COG3104 487 SPKLNRM 493 (498)
T ss_pred hHHHHHh
Confidence 9887754
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=2.7e-49 Score=429.69 Aligned_cols=391 Identities=24% Similarity=0.372 Sum_probs=323.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccC
Q 010840 2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 81 (499)
Q Consensus 2 ~~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~ 81 (499)
.+|+++++++.+|++++++++..+..+ ..+...++++|+++++|+|++|||++++++|||
T Consensus 55 ~tIl~~~ii~~lG~~llai~a~~~~~~--------------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf 114 (654)
T TIGR00926 55 KTILYLSIVYVVGHALLSFGAIPSSGH--------------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF 114 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccccc--------------------chHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence 378899999999999999987622221 124556889999999999999999999999999
Q ss_pred CCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHHHHHHhccccccccCCC
Q 010840 82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPG 154 (499)
Q Consensus 82 ~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-------g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~ 154 (499)
+++++ ++++++|+||||++|+|+++++++++++++++ ||+++|++++++|++++++|..++|+|++.+|+
T Consensus 115 ~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~ 191 (654)
T TIGR00926 115 EERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPK 191 (654)
T ss_pred Cccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 86543 34899999999999999999999999998654 699999999999999999999999999988899
Q ss_pred CChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchh
Q 010840 155 GSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQV 234 (499)
Q Consensus 155 g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~v 234 (499)
++++.++.++++.++|++...... + ...+|+|+++... .++++
T Consensus 192 gs~l~~v~~vi~~a~~~~~~~~~~-----------------------~-~~~~~ld~a~~~~-------------~~~~V 234 (654)
T TIGR00926 192 GNIVSKVIKCIVTALRKRFSTRSE-----------------------H-WPLHWLDYAKDKH-------------DIRMI 234 (654)
T ss_pred ccHHHHHHHHHHHHHHHhhccCCc-----------------------c-cchhHHHHhcccc-------------ccchH
Confidence 999999999998887764321110 0 0135677665432 34679
Q ss_pred hHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010840 235 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGH 314 (499)
Q Consensus 235 e~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~ 314 (499)
||+|++++++++++..++||.++.|+.|+++.|+.+||++++++.+|+++++++|++.++++.|++++.++|.++|++.+
T Consensus 235 ~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ 314 (654)
T TIGR00926 235 RSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR 314 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886544
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------------------------h---
Q 010840 315 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA-----------------------------------------I--- 350 (499)
Q Consensus 315 ~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~-----------------------------------------~--- 350 (499)
+++++|+++|++++++++++++++|.++++.. .
T Consensus 315 ---ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (654)
T TIGR00926 315 ---FTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTS 391 (654)
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceEEEEecCCCCcceEEEEecCCcccccccccCccccc
Confidence 79999999999999999999999998754000 0
Q ss_pred ----------h-------------------c-------------C----C------c-----------------------
Q 010840 351 ----------S-------------------H-------------G----Y------E----------------------- 355 (499)
Q Consensus 351 ----------~-------------------~-------------g----~------~----------------------- 355 (499)
. . + + .
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 471 (654)
T TIGR00926 392 GDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRL 471 (654)
T ss_pred cccccccccccccccceEEEEeccccccccCCCCccccceeecCCceEEEEEecCCcceeeeeecCccCCCCCCCceEEE
Confidence 0 0 0 0 0
Q ss_pred ------c-----------------------------------------------------------------cc------
Q 010840 356 ------F-----------------------------------------------------------------SF------ 358 (499)
Q Consensus 356 ------~-----------------------------------------------------------------~~------ 358 (499)
+ +.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 551 (654)
T TIGR00926 472 VNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQ 551 (654)
T ss_pred EecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecccccccccccccccccccceEEEEEEcCCCCCCcce
Confidence 0 00
Q ss_pred ------cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCC
Q 010840 359 ------LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGN 432 (499)
Q Consensus 359 ------~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~ 432 (499)
..+++ +|++||+|||+++++||++.+++++||.|+|||++||+..+++|.++.++|+.+...+... ....
T Consensus 552 ~~~~~~~~~~~-~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~-~~~~-- 627 (654)
T TIGR00926 552 AQIVELVSVNT-VSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEF-ENFS-- 627 (654)
T ss_pred eEEEEecCCCc-eeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCh--
Confidence 00222 7889999999999999999999999999999999999999999999999999998777543 1110
Q ss_pred CCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010840 433 PKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 475 (499)
Q Consensus 433 ~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y 475 (499)
+...-|.+++.++++..++|.++++.|
T Consensus 628 ----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 628 ----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 123467888999999999999999776
No 4
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=8.2e-51 Score=419.39 Aligned_cols=365 Identities=31% Similarity=0.447 Sum_probs=261.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
||++|+++|++|+++|++++. |...+ ++.+.+++++||+++++|+|++|||+++|++|||+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~-~~~~~------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~ 63 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI-PPSLP------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYD 63 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT-SSSC------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSS
T ss_pred hhhHHHHHHHHHHHHhHHHHh-cchhh------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhc
Confidence 789999999999999999998 44322 34678899999999999999999999999999999
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccccc-CCCCChHHH-
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTR- 160 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~-~p~g~pl~~- 160 (499)
++++ ++++++|+||||++|+|++++.++++|+++++||+++|++++++|++++++|+.++++|++. +|.++++.+
T Consensus 64 ~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~ 140 (372)
T PF00854_consen 64 EDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNF 140 (372)
T ss_dssp TTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--
T ss_pred ccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchh
Confidence 8752 24899999999999999999999999999999999999999999999999999999999998 788898888
Q ss_pred HHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCcc-ccccchhhHhHH
Q 010840 161 VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKT 239 (499)
Q Consensus 161 ~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~-~~~~~~ve~~k~ 239 (499)
...++.++.+++....|..... +++..... . .... .......+ +...+... ...|. .|+++++|++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~-~~~~--~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~k~ 209 (372)
T PF00854_consen 141 IKLVLVAAFKKRKLAVPKGSSW-LDWALFQY---S-ERSI--FGIIVFIR-AAVIFFPE---IFFWALFCQVQRVEELKA 209 (372)
T ss_dssp SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH---C-CCCC--CCCCCHHH-HHHHHCCC---HHHHTTTSSTTTHHHCCH
T ss_pred HHHHHHHHHHHhhcccccchHH-HHHhhhhh---h-hhhh--hhhhhhcc-chhhhhhh---hhhcccCCccceeeeeee
Confidence 5556666666665544321111 11100000 0 0000 00000000 11111000 01222 167889999999
Q ss_pred hhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccC-eeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 010840 240 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK-LKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA 318 (499)
Q Consensus 240 ~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g-~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~ 318 (499)
+.+.+|++...++|+.++.|..+....|+.+||+.+++ +++|+++++++|++++++++|+++++++|+.|+ .+ ++
T Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~-~~---~~ 285 (372)
T PF00854_consen 210 LIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR-GI---QP 285 (372)
T ss_dssp HHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--------
T ss_pred eeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh-cc---cc
Confidence 99999999999999999999999999999999999998 999999999999999999999999999999983 23 38
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
++++|+++|++++++++++++.+|.+|....+++|. .+.+|++|+|++++++|+++++++++..++.+|+
T Consensus 286 ~~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~~----------~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~ 355 (372)
T PF00854_consen 286 SPPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCGK----------VSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPS 355 (372)
T ss_dssp --HHHHHHH-HHHHHHHHTTTHHHH---HH----TT------------THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhhhhcccccCC----------CChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHH
Confidence 999999999999999999999999988766555432 5669999999999999999999999988888888
Q ss_pred hhhHHHHhHHHHHhHH
Q 010840 399 AMKSIGSAYAALAGGL 414 (499)
Q Consensus 399 ~mr~~~~gl~~l~~a~ 414 (499)
++++.++|+|+...++
T Consensus 356 ~~p~~m~~~~~~~~~~ 371 (372)
T PF00854_consen 356 RAPSSMMGIWFALSAF 371 (372)
T ss_dssp T-SSSSTHHHHHHH--
T ss_pred hhhHHHHHHHHHHhcc
Confidence 8888888888876654
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=4.9e-42 Score=361.71 Aligned_cols=394 Identities=13% Similarity=0.119 Sum_probs=284.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++++|.++..+|++++..... ....+++++.++++|+|++|||.+++++|+|+
T Consensus 78 ~iliG~il~~lg~lll~~~~~---------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp 130 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASEI---------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYE 130 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCC
Confidence 567888888888876653211 11246678888999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCC-CCChHH--
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLT-- 159 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p-~g~pl~-- 159 (499)
++|++ |+++|+++|+++|+|++++|.+++++++++||+.+|++++++|++++++++.++|++.+..+ +.+|.+
T Consensus 131 ~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~ 206 (493)
T PRK15462 131 PTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRAT 206 (493)
T ss_pred CCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhh
Confidence 87654 78999999999999999999999999999999999999999999999999998887755311 112221
Q ss_pred HHHHH-----HHHH-----HhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCcccc
Q 010840 160 RVAQV-----LVAA-----FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLC 229 (499)
Q Consensus 160 ~~~~v-----l~~a-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~ 229 (499)
+..+. .... .......... ... +.. ..-.....+.... .. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~---------------------~~~~~~~~~~~~~--~~----~ 257 (493)
T PRK15462 207 NFLLPNWGWLLVLLVATPALITVLFWKEW-SVY-ALI---------------------VATIIGLGVLAKI--YR----K 257 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHH---------------------HHHHHHHHHHHHH--HH----h
Confidence 10000 0000 0000000000 000 000 0000000000000 00 0
Q ss_pred ccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHh
Q 010840 230 TVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLC 308 (499)
Q Consensus 230 ~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~ 308 (499)
. ...+|+||+..++++++..++||+.|+|++++++.+++ ++|++++||++|++|+|++||++|+++.|++.++|.++.
T Consensus 258 ~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~ 336 (493)
T PRK15462 258 A-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESV 336 (493)
T ss_pred c-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 1 12478999999999999999999999999999999998 799999999999999999999999999999999998875
Q ss_pred hhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 010840 309 RRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGL 388 (499)
Q Consensus 309 ~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~ 388 (499)
+|. ++++.++|+++|+++.++|++++.+.... .++ ... +|++|++..|+++++||++.+|.+
T Consensus 337 ~~~----~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~---------~~~-~s~~wl~~~~~~~t~gEl~~sPvg 398 (493)
T PRK15462 337 AGN----RTVRIWGKFALGLGLMSAGFCILTLSARW----SAM---------YGH-SSLPLMVLGLAVMGFAELFIDPVA 398 (493)
T ss_pred cCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCC-cCHHHHHHHHHHHHHHHHHHChHH
Confidence 542 23899999999999999999999876532 111 123 789999999999999999999999
Q ss_pred HHHHHhhcCchhhHHHHhHHHHHh-HHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHH--H
Q 010840 389 LEFLYEEAPDAMKSIGSAYAALAG-GLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVIN--F 465 (499)
Q Consensus 389 ~ef~~~~aP~~mr~~~~gl~~l~~-a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~--~ 465 (499)
++++.+.||++++|++||+|++.. ++|+.+++.+.+....-+. ++.-...+ +..++..+|..++.++++. .
T Consensus 399 ls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~ 472 (493)
T PRK15462 399 MSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF-----DASGAINY-SINAYIEVFDQITWGALACVGV 472 (493)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-----Cccccccc-hhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999955 8999999999887542110 11000000 1113455777777766555 4
Q ss_pred HHHHHhhccccccccc
Q 010840 466 CAFLYSAYRYKYRSEQ 481 (499)
Q Consensus 466 ~~~~~~~~~y~~~~~~ 481 (499)
+++..+.+..|.|||.
T Consensus 473 ~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 473 VLMIWLYQALKFRNRA 488 (493)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 5555566666777765
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=9.6e-39 Score=340.20 Aligned_cols=394 Identities=9% Similarity=0.119 Sum_probs=290.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.+|.+++.+|++++.++.. ...++++++.++++|.|++|||..++++|||+
T Consensus 83 ~~~~g~~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p 135 (489)
T PRK10207 83 TIVLGAIVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYP 135 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence 577888999999988876532 11246788999999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccccc--CCCCChHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR 160 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~--~p~g~pl~~ 160 (499)
++++| |++.|+++|+++|+|+++|+.+++++.+++||+++|.++++++.++++.+..+++++++. +|++++...
T Consensus 136 ~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (489)
T PRK10207 136 PKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSF 211 (489)
T ss_pred CCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhh
Confidence 76643 678999999999999999999999999999999999999999999999998888777653 343443321
Q ss_pred --HHHHH------HHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccc
Q 010840 161 --VAQVL------VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVT 232 (499)
Q Consensus 161 --~~~vl------~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~ 232 (499)
...+. ...+.. ..+.. +... + .+.......... .-++..+.+
T Consensus 212 ~~~~l~~~~~~~~~~~~~~-~~~~~-~~~~--~----------------------~~~~~~~i~~~~----f~~~~~~~~ 261 (489)
T PRK10207 212 SKLLLVLLGSVVMIFVCAW-LMHNV-EVAN--L----------------------VLIVLSIVVTII----FFREAFKLD 261 (489)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHhhh-hHHH--H----------------------HHHHHHHHHHHH----HHHHHhcCC
Confidence 11000 000000 00000 0000 0 000000000000 000001222
Q ss_pred hhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhh
Q 010840 233 QVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRI 311 (499)
Q Consensus 233 ~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~ 311 (499)
..++++.+..+++++..++||.+++|+.+.++.|++ ++|++..|+.+|++++|++|++.++++.|+..+++.++.+|
T Consensus 262 -~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r- 339 (489)
T PRK10207 262 -KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSK- 339 (489)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC-
Confidence 355777888888899999999999999999999988 68888889999999999999999999999999877665444
Q ss_pred cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840 312 TGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF 391 (499)
Q Consensus 312 ~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef 391 (499)
..+ +++.+|+++|+++.++|++++++.+... ... ... +|+||++++|++.|+||.+.+|.++|+
T Consensus 340 ~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~---------~~~-~s~~~~i~~~~l~g~Ge~~~~~~g~~~ 403 (489)
T PRK10207 340 GKD---LSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADA---------QGL-TSPWFIVLVYLFQSLGELFISALGLAM 403 (489)
T ss_pred CCC---CCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 233 8999999999999999998887654311 100 112 779999999999999999999999999
Q ss_pred HHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 392 LYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 392 ~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
+++.+|++++|.+||+|+++.++|+.+|+.+.+.+.. ++ ...|| . . .++.+..+|..+++.+++..++++++
T Consensus 404 ~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~--~~~~~-~---~-~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 404 IAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV-PD--NITDP-L---E-TLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--ccccc-h---h-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999877542 11 00011 0 0 11235679999999999999999999
Q ss_pred hccccccccccc
Q 010840 472 AYRYKYRSEQKH 483 (499)
Q Consensus 472 ~~~y~~~~~~~~ 483 (499)
.|++++.-++||
T Consensus 476 ~~~~~~~~~~~~ 487 (489)
T PRK10207 476 VPWLNRMINTPE 487 (489)
T ss_pred HHHHHHHhcccc
Confidence 999987644443
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=4.1e-38 Score=334.78 Aligned_cols=381 Identities=13% Similarity=0.129 Sum_probs=283.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.+++.+|++++.++. +.+.+++++.++++|.|+++|+..++++|+++
T Consensus 81 ~l~~~~~~~~~g~~~~~~~~----------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~ 132 (475)
T TIGR00924 81 TMVLGGIVLMLGHFMLAMSI----------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE 132 (475)
T ss_pred HHHHHHHHHHHHHHHHHhcc----------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence 57788888888888777532 12467778889999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHH-
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV- 161 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~- 161 (499)
+++++ +|+++|+++|+++|+|+++|+.+++++.+++||+++|.++++.+++++++++..++.+++.++++++.+..
T Consensus 133 ~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (475)
T TIGR00924 133 RGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQG 209 (475)
T ss_pred CCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhh
Confidence 76532 26889999999999999999999999999999999999999999999999988888887654433332110
Q ss_pred ----H--HHH----HHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCcccccc
Q 010840 162 ----A--QVL----VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV 231 (499)
Q Consensus 162 ----~--~vl----~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~ 231 (499)
. .++ ....+.. ..... . +. . ....+. ...+...+.... ..+| +.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~-~~~~~--~---~~---------~-~~~~~~-----~~~~~~~~~~~~-~~~~----~~ 263 (475)
T TIGR00924 210 KTYGKLLLALLAALALVFFCA-WLMHH--V---VI---------A-NILLMT-----VTLAVIIFFFRL-AFKP----RL 263 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHhc--c---HH---------H-HHHHHH-----HHHHHHHHHHHH-HHhc----cC
Confidence 0 000 0011100 00000 0 00 0 000000 000000000000 0011 12
Q ss_pred chhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhh
Q 010840 232 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRR 310 (499)
Q Consensus 232 ~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r 310 (499)
++ +|+++..++++++++.++||++|+|+.+++..|+. ++|++++++++|+++++++|++++++++|+++++|.++.||
T Consensus 264 ~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~ 342 (475)
T TIGR00924 264 DA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK 342 (475)
T ss_pred CH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 33 34555667899999999999999999999876654 79999999999999999999999999999999887776665
Q ss_pred hcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840 311 ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLE 390 (499)
Q Consensus 311 ~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~e 390 (499)
.++ ++...|+++|+++.++|++.++++... +++ ..+ +|+||++++|+++|+||++++|++++
T Consensus 343 -~~~---~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---------~~~-~s~~~~i~~~~~~~~ge~~~~p~~~~ 404 (475)
T TIGR00924 343 -GKD---PTTPLKFTLGMLFCGASFLTFAASIWF----ADA---------GGL-TSPWFMVLIYLFQTLGELMISPLGLS 404 (475)
T ss_pred -CCC---CCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 233 788999999999999999999876321 111 234 88999999999999999999999999
Q ss_pred HHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 010840 391 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLY 470 (499)
Q Consensus 391 f~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~ 470 (499)
+++++||+++||.++|+|.+..++|+.+++.+.+..... .+| ..+|..+++++++.+++++.
T Consensus 405 ~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 405 WWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP--------QGV----------TGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cch----------hhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764311 112 34888899999999999988
Q ss_pred hhccccc
Q 010840 471 SAYRYKY 477 (499)
Q Consensus 471 ~~~~y~~ 477 (499)
+.|+.++
T Consensus 467 ~~~~~~k 473 (475)
T TIGR00924 467 MVPWLNR 473 (475)
T ss_pred HHHHHHh
Confidence 8888765
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=1.3e-37 Score=332.95 Aligned_cols=390 Identities=12% Similarity=0.162 Sum_probs=286.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.+++.+|+.++.++.. ....+++++.++++|.|+++|+..++++|+|+
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~~---------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~ 142 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSGH---------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYE 142 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcC
Confidence 566777888888777765421 12456788899999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccccc--CCCCChHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR 160 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~--~p~g~pl~~ 160 (499)
++++| +++.++++|+++|+|+++|+.+++++.+++||+++|.++++.++++++.++..++.+++. +|+++|...
T Consensus 143 ~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 218 (500)
T PRK09584 143 KDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINY 218 (500)
T ss_pred CCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccch
Confidence 65543 567899999999999999999999999999999999999999999998888877666543 233333321
Q ss_pred ------HHHHHHHHH-hhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccch
Q 010840 161 ------VAQVLVAAF-RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQ 233 (499)
Q Consensus 161 ------~~~vl~~a~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ 233 (499)
...+..... .......+.. .. .. ..+......... ....+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------~~-----~~~~~~~~~~~~-------~~~~~~~~- 268 (500)
T PRK09584 219 RKLLLTIVGVVALIAIATWLLHNQEI-----AR------------MA-----LGVVALGIVVIF-------GKEAFAMK- 268 (500)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchH-----HH------------HH-----HHHHHHHHHHHH-------HHHHhhcC-
Confidence 111111111 1000000000 00 00 000000000000 00001223
Q ss_pred hhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 010840 234 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRIT 312 (499)
Q Consensus 234 ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~ 312 (499)
.+|+|+.+..+++++..++||+++.|+.+.+..|+. ++|++++|+.+|+++++++|++.+++++|+.++++.++.+|
T Consensus 269 ~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r-- 346 (500)
T PRK09584 269 GAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDR-- 346 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcC--
Confidence 356777778888999999999999999999999987 68888889999999999999999999999999987665444
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840 313 GHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFL 392 (499)
Q Consensus 313 ~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~ 392 (499)
+++.+|+++|+++.++|++++++.... +++ ... +|++|++++|+++|+||++++|.+++++
T Consensus 347 -----~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~---------~~~-vs~~~~~~~~~l~~~ge~~~~p~g~s~~ 407 (500)
T PRK09584 347 -----LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND---------AGI-VSVNWLIASYGLQSIGELMISGLGLAMV 407 (500)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC---------CCc-cCHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 578899999999999999998876432 111 123 8899999999999999999999999999
Q ss_pred HhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccC-ccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 393 YEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI-NTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 393 ~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~l-n~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
++++|+++||++||+|+++.++|+.+++.+.+.+.. +. -..|.. ..+.+..+|..+++++++..++++.+
T Consensus 408 ~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~--------~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 408 AQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PD--------NVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc--------ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875431 10 011111 11225568888999998889999999
Q ss_pred hccccccccccc
Q 010840 472 AYRYKYRSEQKH 483 (499)
Q Consensus 472 ~~~y~~~~~~~~ 483 (499)
+++.++..++|+
T Consensus 479 ~~~~~k~~~~~~ 490 (500)
T PRK09584 479 APKLNRMTQDDS 490 (500)
T ss_pred HHHHHHHhcCCC
Confidence 999987755555
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.45 E-value=6.1e-11 Score=124.03 Aligned_cols=299 Identities=13% Similarity=0.002 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.+++...+.+++.|...+...+.+.|.+++++ +.+...+++...++|..+|+.+++++.+..+|++.|.+.+
T Consensus 110 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~ 183 (417)
T PRK10489 110 LLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA 183 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455566667778888878888888888876422 5677888999999999999999999988889999998877
Q ss_pred HHHHHHHHHHHhccccccccCCCC----ChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccc
Q 010840 132 IAMGISNMLFFIGTPLYRHRLPGG----SPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFR 207 (499)
Q Consensus 132 ~~m~l~~i~f~~g~~~~~~~~p~g----~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 207 (499)
+..+++.+..+..+ ..+|+. ++....
T Consensus 184 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~---------------------------------------------- 213 (417)
T PRK10489 184 AGTFITLLPLLRLP----ALPPPPQPREHPLRSL---------------------------------------------- 213 (417)
T ss_pred HHHHHHHHHHHhCC----CCCCCCcccccchHHH----------------------------------------------
Confidence 77766655433211 111110 000000
Q ss_pred cccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---c
Q 010840 208 CLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---C 284 (499)
Q Consensus 208 ~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~ 284 (499)
. ..++ .+-..+.+ + .+++.... +.......+.+.... .... +.++. +
T Consensus 214 -~--------------~~~~-----~~~~~~~~-~--~~~~~~~~-~~~~~~~~~~~p~~~---~~~~---g~~~~~~g~ 263 (417)
T PRK10489 214 -L--------------AGFR-----FLLASPVV-G--GIALLGGL-LTMASAVRVLYPALA---DEVW---QMGAAQIGL 263 (417)
T ss_pred -H--------------HHHH-----HHHcChHH-H--HHHHHHHH-HHHHHhHHHhhHHHH---Hhcc---CCChhHhHH
Confidence 0 0000 00000111 1 11111111 111111111111111 1101 12222 2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840 285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 364 (499)
Q Consensus 285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~ 364 (499)
+.....+..++..++..++ .+| .+..+-+.++.++.+++++..+..
T Consensus 264 ~~~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~----------------------- 309 (417)
T PRK10489 264 LYAAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM----------------------- 309 (417)
T ss_pred HHHHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc-----------------------
Confidence 2333333334443333322 222 122233556666666665443321
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 444 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ 444 (499)
.++++.+...++.+++.....+....+..+..|++.||..+|++.....+|..+|+.+...+....
T Consensus 310 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-------------- 375 (417)
T PRK10489 310 PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-------------- 375 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh--------------
Confidence 224445556778889888888888899999999999999999999888888888888876654211
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchh
Q 010840 445 INTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYE 488 (499)
Q Consensus 445 ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 488 (499)
+ ....++..+.+.++..++.....+++|.+..+|.|+|..
T Consensus 376 -g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (417)
T PRK10489 376 -T---PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDAS 415 (417)
T ss_pred -c---hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCC
Confidence 0 112444455555555555555556666655555555543
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.37 E-value=4.1e-10 Score=117.46 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.+++.|.+.|...+.+.|.+++++ |.+.+.+++...++|..+|+.+++++. ++||+..|.+.+
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 3556777788888999999999999988876422 678999999999999999999999998 789999999887
Q ss_pred HHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccc
Q 010840 132 IAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK 211 (499)
Q Consensus 132 ~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~ 211 (499)
+..+++.+......+..+ +++..++. +
T Consensus 172 ~~~~~~~i~~~~~~~~~~-~~~~~~~~-----------~----------------------------------------- 198 (400)
T PRK11646 172 VLFVLAAAFNAWLLPAYK-LSTVRTPV-----------R----------------------------------------- 198 (400)
T ss_pred HHHHHHHHHHHHhCCccc-ccccchhh-----------H-----------------------------------------
Confidence 776665543332211100 00000000 0
Q ss_pred eeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHH
Q 010840 212 AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGL 291 (499)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i 291 (499)
..|+ +-..+. +.+. +.+....++..+.|....+.... .+ .++...-..++..++.+
T Consensus 199 ------------~~~~----~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~p~~~---~~-~~~~~~~~g~l~~~~~~ 254 (400)
T PRK11646 199 ------------EGMT----RVLRDK-RFVT---YVLTLTGYYMLAVQVMLMLPIMV---ND-IAGSPSAVKWMYAIEAC 254 (400)
T ss_pred ------------HHHH----HHHcCc-hHHH---HHHHHHHHHHHHHHHHHhhhhhH---Hh-hcCCchHHHHHHHHHHH
Confidence 0000 000011 1111 11112223333333222221111 11 11101001122333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHH
Q 010840 292 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLL 371 (499)
Q Consensus 292 ~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli 371 (499)
..+...... .+...|+ .+..+++..|+++.+++++..+.. .+.++.+
T Consensus 255 ~~~~~~~~~----~~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~-----------------------~~~~~~~ 301 (400)
T PRK11646 255 LSLTLLYPI----ARWSEKR------FRLEHRLMAGLLIMSLSMFPIGMV-----------------------SNLQQLF 301 (400)
T ss_pred HHHHHHHHH----HHHHHHh------cchhHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHHH
Confidence 222222111 2222221 233455777777777776554433 1234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840 372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 428 (499)
Q Consensus 372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~ 428 (499)
...++.++++.+..|.......+.+|++.||..+|++.+..++|..+|+.+...+..
T Consensus 302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~ 358 (400)
T PRK11646 302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD 358 (400)
T ss_pred HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence 455778999999999999999999999999999999999999999999988877653
No 11
>PRK10054 putative transporter; Provisional
Probab=99.34 E-value=3.1e-10 Score=118.09 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~ 133 (499)
.++++..+.+.+.+.+.|...+...|.+++++ |.+.++++|...|+|..+++.+.+++.+ .||+..|.+.++.
T Consensus 98 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~ 170 (395)
T PRK10054 98 LVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAIC 170 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHH
Confidence 34444455666667778888888888886432 6789999999999999999999999874 7999999988877
Q ss_pred HHHHHH
Q 010840 134 MGISNM 139 (499)
Q Consensus 134 m~l~~i 139 (499)
.+++++
T Consensus 171 ~~i~~i 176 (395)
T PRK10054 171 SAFPLV 176 (395)
T ss_pred HHHHHH
Confidence 777654
No 12
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.30 E-value=2.7e-09 Score=108.95 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.++++..+.++|.|...+...+++.|.+++++ |.+.+.++..+.++|.++++.+.+++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34567788889999999999999999999987422 678999999999999999999999988899999999887
Q ss_pred HHHHHHHHHHHH
Q 010840 131 AIAMGISNMLFF 142 (499)
Q Consensus 131 ~~~m~l~~i~f~ 142 (499)
++..++..+...
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 776665555433
No 13
>PRK03545 putative arabinose transporter; Provisional
Probab=99.28 E-value=4.1e-09 Score=109.20 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++-.+.+++.|.+-|...+++.|.+++++ |.+.+.++..+.++|..+++.+.+++.+..||++.|.+.+
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 4456666778888888888999999999987432 5788999999999999999999999988899999999887
Q ss_pred HHHHHHHHH
Q 010840 132 IAMGISNML 140 (499)
Q Consensus 132 ~~m~l~~i~ 140 (499)
+..++..+.
T Consensus 171 ~~~~l~~~~ 179 (390)
T PRK03545 171 GGALITLLL 179 (390)
T ss_pred HHHHHHHHH
Confidence 766655443
No 14
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.28 E-value=2.4e-09 Score=108.62 Aligned_cols=265 Identities=14% Similarity=0.034 Sum_probs=155.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.++++..+.+++.|...|...++..|.+++++ |.+.++++..+.++|.++++.+++++.+..||+..|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45678888889999999999999999999987532 688999999999999999999999998889999999888
Q ss_pred HHHHHHHHHHHHhccccccccCC-CCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccc
Q 010840 131 AIAMGISNMLFFIGTPLYRHRLP-GGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL 209 (499)
Q Consensus 131 ~~~m~l~~i~f~~g~~~~~~~~p-~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 209 (499)
++..+++.+.....+.. ++++ +..+..+ . .. . +..
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------------------~-----------------~~--~---~~~ 200 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALSN--------------------A-----------------VL--R---DTR 200 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccch--------------------h-----------------HH--H---HHH
Confidence 77766665543322110 0000 0000000 0 00 0 000
Q ss_pred cceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhch-hhHHHHHhhhcccccCeeecCC---cc
Q 010840 210 DKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFL-TLSVQQAYTMNTHMGKLKLPVT---CM 285 (499)
Q Consensus 210 d~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~-t~~~~qa~~m~~~i~g~~ip~~---~l 285 (499)
.. .++.++--.+..+.+...+++..+.... +.......+. . +.++. .+
T Consensus 201 --------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~ 252 (365)
T TIGR00900 201 --------------EG--------IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-L-----GRGSTHYGWV 252 (365)
T ss_pred --------------hH--------HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-h-----CCchHHHHHH
Confidence 00 0001110111122222233333222222 1111111110 0 11222 22
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840 286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365 (499)
Q Consensus 286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~ 365 (499)
.....+..++..++..+ +.+|. ...+-+..++++.++++....... .
T Consensus 253 ~~~~~~~~~~~~~~~~~----l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 299 (365)
T TIGR00900 253 LAAFGLGALLGALLLGL----LGRYF-------KRMALMTGAIFVIGLAILVVGLTP----------------------P 299 (365)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHh-------chhHHHHHHHHHHHHHHHHHHhhc----------------------h
Confidence 33333333444444332 22332 222334445555555554443321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+.++.+...++.+++.....+.......+..|++.||..+|++.....+|..+++.+...+
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 300 NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666788999999999999999999999999999999999999999999988887654
No 15
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.28 E-value=9.4e-09 Score=106.68 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+...++++-.+.++|.|...++..+...|.+++++ |.+...++..+.++|..+|+.+++++.+..||+..|.++
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34567777789999999999999999999886533 567888888999999999999999998889999988766
Q ss_pred HHHHH
Q 010840 131 AIAMG 135 (499)
Q Consensus 131 ~~~m~ 135 (499)
.+..+
T Consensus 185 ~~~~~ 189 (399)
T PRK05122 185 MLLAL 189 (399)
T ss_pred HHHHH
Confidence 55433
No 16
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.26 E-value=8.1e-09 Score=107.55 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
+.+++...+.+++.+..-+...+...|.+++++ +.+...+.+...++|..+++.+.+++.++.+|++.|.+.++
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~ 175 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA 175 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 456667777888888888888888888886432 45667788888889999999999999888999999988777
Q ss_pred HHHHHHHHH
Q 010840 133 AMGISNMLF 141 (499)
Q Consensus 133 ~m~l~~i~f 141 (499)
..+++.+..
T Consensus 176 ~~~~~~~~~ 184 (406)
T PRK15402 176 LAALSFFGL 184 (406)
T ss_pred HHHHHHHHH
Confidence 777665533
No 17
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.25 E-value=5.3e-09 Score=105.12 Aligned_cols=260 Identities=19% Similarity=0.231 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.+++.|...+...++..|.+++++ |...+++++.+.++|..+++.+.+++.+..+|+..|.+.+
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567788889999999999999999999998633 6789999999999999999999999998899999999888
Q ss_pred HHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccc
Q 010840 132 IAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK 211 (499)
Q Consensus 132 ~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~ 211 (499)
+..+++.+...... +....
T Consensus 161 ~~~~~~~~~~~~~~-------------~~~~~------------------------------------------------ 179 (352)
T cd06174 161 ILGLLLALLLLFLL-------------RLLLL------------------------------------------------ 179 (352)
T ss_pred HHHHHHHHHHHHHH-------------HHHHH------------------------------------------------
Confidence 87777766544321 00000
Q ss_pred eeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhh-hcccccCeeecCCcccchhH
Q 010840 212 AALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHMGKLKLPVTCMPVFPG 290 (499)
Q Consensus 212 a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~-m~~~i~g~~ip~~~l~~~n~ 290 (499)
+.+....++..+............+ .+.+ .....++.....
T Consensus 180 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 221 (352)
T cd06174 180 ----------------------------------LALAFFLLSFGYYGLLTYLPLYLQEVLGLS----AAEAGLLLSLFG 221 (352)
T ss_pred ----------------------------------HHHHHHHHHhHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHH
Confidence 0000011111111111111101100 0000 011223444555
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCchh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHH
Q 010840 291 LSIFLILSLYYSTFVPLCRRITGHPRGASQLQ-RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW 369 (499)
Q Consensus 291 i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~-ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~w 369 (499)
+..++..++..++ .+|.. ..+ .+.++.++.+++++..... .+.++
T Consensus 222 ~~~~i~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~ 267 (352)
T cd06174 222 LGGILGALLGGLL----SDRLG-------RRRLLLLIGLLLAALGLLLLALA-----------------------PSLAL 267 (352)
T ss_pred HHHHHHHHHHHHH----HHHHH-------hhhHHHHHHHHHHHHHHHHHHHh-----------------------ccHHH
Confidence 5555555555443 34422 122 4667777777777665543 22566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccch
Q 010840 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR 449 (499)
Q Consensus 370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~ 449 (499)
.+...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+...+... .+|
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~--------~~~--------- 330 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT--------GGY--------- 330 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCc---------
Confidence 778899999999999999999999999999999999999999999999999998765421 112
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 010840 450 FDYLYWLLAVLSVINFCAF 468 (499)
Q Consensus 450 l~~~f~~la~l~~~~~~~~ 468 (499)
...|...+++.++..+++
T Consensus 331 -~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 331 -GGVFLILAALALLAALLL 348 (352)
T ss_pred -chHHHHHHHHHHHHHHHh
Confidence 235666667666666554
No 18
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.23 E-value=6.6e-09 Score=107.83 Aligned_cols=83 Identities=11% Similarity=0.013 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.+++.+. -|...+...|++++++ |.+...++..+.++|.++++.+.+++.+..+|+..|.+.+
T Consensus 107 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 179 (408)
T PRK09874 107 IWQFLILRALLGLLGGF-VPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA 179 (408)
T ss_pred HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 44566666677777554 4777777888775322 5677888999999999999999999988899999998888
Q ss_pred HHHHHHHHHH
Q 010840 132 IAMGISNMLF 141 (499)
Q Consensus 132 ~~m~l~~i~f 141 (499)
+..+++.+..
T Consensus 180 ~~~~~~~~~~ 189 (408)
T PRK09874 180 SVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHH
Confidence 7766665533
No 19
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.22 E-value=1.6e-08 Score=105.03 Aligned_cols=82 Identities=17% Similarity=0.236 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.+.++..+.+++.|...|...+...|.+++++ |.+...+++.+.++|.++++.++.++.+..+|+..|.+.+
T Consensus 103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (406)
T PRK11551 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG 176 (406)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 3466677788899999999999999999986432 6788999999999999999999988888899999998877
Q ss_pred HHHHHHHH
Q 010840 132 IAMGISNM 139 (499)
Q Consensus 132 ~~m~l~~i 139 (499)
+..++..+
T Consensus 177 ~~~~~~~~ 184 (406)
T PRK11551 177 VGPLLLVP 184 (406)
T ss_pred HHHHHHHH
Confidence 66555544
No 20
>PRK10504 putative transporter; Provisional
Probab=99.20 E-value=3.7e-08 Score=104.66 Aligned_cols=86 Identities=15% Similarity=0.082 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
...++++..+.++|.|..-|...+.+.|.++++ ++...+.++....++|..+++.+.+++.++.||++.|.+..
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 345677788999999999999888888887632 25678899999999999999999999998999999999877
Q ss_pred HHHHHHHHHHHh
Q 010840 132 IAMGISNMLFFI 143 (499)
Q Consensus 132 ~~m~l~~i~f~~ 143 (499)
....++.+....
T Consensus 172 ~~~~l~~~~~~~ 183 (471)
T PRK10504 172 PVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHH
Confidence 666655554443
No 21
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.20 E-value=7.4e-09 Score=108.80 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHH---HHHhhccchHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGSAFG 128 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~---~~i~~~~g~~~~F~ 128 (499)
.+.++++..+.++|.|..-+...++++|.+++++ |.....+++.+.++|.++++.++ ..+.+..+|++.|.
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 3577888899999999999999999999987543 57789999999999999999998 66667789999999
Q ss_pred HHHHHHHHHHHHHH
Q 010840 129 ALAIAMGISNMLFF 142 (499)
Q Consensus 129 i~~~~m~l~~i~f~ 142 (499)
+.++..++.++..+
T Consensus 201 ~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 201 LQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHh
Confidence 87666655554443
No 22
>PRK12382 putative transporter; Provisional
Probab=99.20 E-value=2.8e-08 Score=102.92 Aligned_cols=76 Identities=11% Similarity=0.170 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+...++++-.+.++|.+..-|...+.+.|.+++++ |.++.+++..+.++|..+++.+++++.+.+||+..+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 45667777888999999888888888888876432 577899999999999999999999998889998877654
Q ss_pred HH
Q 010840 131 AI 132 (499)
Q Consensus 131 ~~ 132 (499)
.+
T Consensus 185 ~~ 186 (392)
T PRK12382 185 MV 186 (392)
T ss_pred HH
Confidence 44
No 23
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.19 E-value=3e-08 Score=106.52 Aligned_cols=289 Identities=16% Similarity=0.121 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (499)
Q Consensus 4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~ 83 (499)
++.+-++.++..+++.+.+... ..+.+.+++...++++|.++..|.-++.+.+..++
T Consensus 78 li~~~~~~~~~~~~L~~l~~~~-----------------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~ 134 (524)
T PF05977_consen 78 LILSQLLRALVALLLAVLAFFG-----------------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK 134 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-----------------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4455566666666666554421 24567888888999999999999999999999986
Q ss_pred CChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHH
Q 010840 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQ 163 (499)
Q Consensus 84 ~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~ 163 (499)
++ ..++..+.-...|+.-++||.++|.+-...|-...|++.+++.+++++.+...++.. +++..|-++..+
T Consensus 135 ~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~ 205 (524)
T PF05977_consen 135 ED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP---PPSSLPRERFFS 205 (524)
T ss_pred hh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---cccccchhhhhh
Confidence 44 567889999999999999999999987788999999999998888766554433221 111111111110
Q ss_pred HHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhh
Q 010840 164 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 243 (499)
Q Consensus 164 vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~ 243 (499)
-+...+| ++ ..-|.+..+
T Consensus 206 ~l~~G~r-------------------------------------yv-------------------------~~~~~l~~~ 223 (524)
T PF05977_consen 206 ALREGLR-------------------------------------YV-------------------------RSSPPLRSV 223 (524)
T ss_pred hHHHHHH-------------------------------------HH-------------------------hcchHHHHH
Confidence 0001100 00 000111111
Q ss_pred hhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchh
Q 010840 244 VPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ 322 (499)
Q Consensus 244 l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ 322 (499)
+ +...++.....-....+...+. .++. .+..+..+.. ..-..-+...++.|..+|. .+..+
T Consensus 224 l---~~~~~~~l~~~a~~aLlPl~a~~~l~~-------~a~~yGll~a--~~gvGai~Gal~~~~l~~~------~~~~~ 285 (524)
T PF05977_consen 224 L---LRSFLFNLFASAVWALLPLFARDVLGG-------GASGYGLLLA--AFGVGAILGALLLPRLRRR------LSSRR 285 (524)
T ss_pred H---HHHHHHHHhhhHHHHhhhHHHHHHhCC-------cHHHHHHHHH--HHHHHHHHHHHHHHHhhcc------cCcch
Confidence 1 1111111111111111222222 2221 1222222221 1112233334444444442 34444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 402 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~ 402 (499)
-+..+.++.+++++..++. -+.|..++..++.|++...........+-..+|+++||
T Consensus 286 lv~~~~~~~a~~~~~lal~-----------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G 342 (524)
T PF05977_consen 286 LVLLASLLFALALLLLALS-----------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG 342 (524)
T ss_pred hhHHHHHHHHHHHHHHhcc-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh
Confidence 5667777777776666543 33566677889999999999999999999999999999
Q ss_pred HHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 403 IGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 403 ~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
..++++......+..+|+.+.+.+.
T Consensus 343 Rv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 343 RVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777666666666665543
No 24
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.19 E-value=4.6e-09 Score=106.12 Aligned_cols=83 Identities=25% Similarity=0.370 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
+.++++..+.++|.|...+...+++.|.+++++ |...+.++..+.++|.++++.+++++.++.+|++.|.+.++
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 478888899999999999999999999998743 67899999999999999999999999988999999999998
Q ss_pred HHHHHHHHH
Q 010840 133 AMGISNMLF 141 (499)
Q Consensus 133 ~m~l~~i~f 141 (499)
..+++.+..
T Consensus 160 ~~~~~~il~ 168 (352)
T PF07690_consen 160 LSLIAAILF 168 (352)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhH
Confidence 888887643
No 25
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.17 E-value=1.3e-08 Score=105.42 Aligned_cols=278 Identities=10% Similarity=0.062 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.++++..+.+.+.+..-|...++..+ ++ + ++...+.+.....++|..+++.+++++.++.||+..|.+.
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~----~---~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~ 164 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-WQ----K---QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL 164 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-HH----H---HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 34566666666777777777877776532 21 1 2466789999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccccccccccc
Q 010840 131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 210 (499)
Q Consensus 131 ~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld 210 (499)
++..++.++.+.. ++. .+|+++ .++.. ..
T Consensus 165 ~~~~~~~~~~~~~-~~~---~~~~~~--------------------~~~~~--------------------~~------- 193 (382)
T TIGR00902 165 TAGLAFMLIGFLI-KPT---IPPKDA--------------------IPEDE--------------------SQ------- 193 (382)
T ss_pred HHHHHHHHHHHHc-CCC---CCCCcc--------------------ccccc--------------------cc-------
Confidence 6553333332221 111 011100 00000 00
Q ss_pred ceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---cccc
Q 010840 211 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---CMPV 287 (499)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~l~~ 287 (499)
++ ++..+..+--++..+.+...+++..+.+..+....+..+ . +.++. .+..
T Consensus 194 --------------~~-----~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~--~-----g~s~~~~g~l~~ 247 (382)
T TIGR00902 194 --------------GD-----SAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA--A-----GISASATGLLWG 247 (382)
T ss_pred --------------cc-----hhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----CCCHhHHHHHHH
Confidence 00 000001000122233344444555565655544333222 1 12232 2233
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchH
Q 010840 288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA 367 (499)
Q Consensus 288 ~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~ 367 (499)
++.+..++..++.++ +.+| .++.+-+.+|.++.++.++..+.. .++
T Consensus 248 ~~~~~~i~~~~~~~~----l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~-----------------------~~~ 293 (382)
T TIGR00902 248 IGVLAEIIIFAFSNK----LFQN-------CSARDLLLISAIACVGRWAIIGAI-----------------------EAF 293 (382)
T ss_pred HHHHHHHHHHHHhHH----HHhh-------CCHHHHHHHHHHHHHHHHHHHHhH-----------------------hhH
Confidence 344444444443333 3444 455566778888888887666543 335
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHH-HHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840 368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 446 (499)
Q Consensus 368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~-l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln 446 (499)
++++...+++++.+.+..+....++.+. |++.++.++|++. ...++|..+++.+.+.+.. ..
T Consensus 294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~---------------~~- 356 (382)
T TIGR00902 294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP---------------TL- 356 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hc-
Confidence 6666667999999999999999999988 9999999999985 5678888888877765442 11
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 010840 447 TGRFDYLYWLLAVLSVINFCA 467 (499)
Q Consensus 447 ~~~l~~~f~~la~l~~~~~~~ 467 (499)
+ ...|+..++++++.+++
T Consensus 357 -g--~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 -G--AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred -c--HHHHHHHHHHHHHHHHH
Confidence 1 13577777777765443
No 26
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.16 E-value=5.3e-09 Score=111.03 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+.++++...++.|++.....+.....+.+..|++.++..+|++.....+|..+|+.+...+.
T Consensus 332 ~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~ 393 (455)
T TIGR00892 332 DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLV 393 (455)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeee
Confidence 35666667888999999999999999999999999999999999999999999998877543
No 27
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.15 E-value=1.3e-08 Score=108.08 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA 131 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-g~~~~F~i~~ 131 (499)
..+++.-.+.++|.|..-|.......+.+++++ |..+..+++.+.++|..+++.+++++.+.. ||+..|.+.+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 456777788999999999999999998887422 678999999999999999999999998884 9999998877
Q ss_pred HHHHHHHH
Q 010840 132 IAMGISNM 139 (499)
Q Consensus 132 ~~m~l~~i 139 (499)
+..++..+
T Consensus 206 ~~~~~~~~ 213 (465)
T TIGR00894 206 IVGCAWSL 213 (465)
T ss_pred HHHHHHHH
Confidence 76554444
No 28
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.13 E-value=3.3e-08 Score=103.74 Aligned_cols=267 Identities=13% Similarity=0.094 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh-------hccch
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------MEHGW 123 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~-------~~~g~ 123 (499)
+...+++...+..++.+.+.....++..+..++ ++| |.+...+.....++|++++..+.+.+. +..||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~ 172 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PRE---RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW 172 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence 444555556667888888888888988887654 333 577888888889999888766654443 24689
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccc
Q 010840 124 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 203 (499)
Q Consensus 124 ~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 203 (499)
+..|.+.++..++..++.....+. +++.. +....
T Consensus 173 ~~~~~i~~~l~~~~~~~~~~~~~e----~~~~~--------------------~~~~~---------------------- 206 (437)
T TIGR00792 173 FMFALVLALIGVVSLIICFFGTKE----RYSEI--------------------PKNIE---------------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEe----cCCCC--------------------Ccccc----------------------
Confidence 988887777666555443332211 11000 00000
Q ss_pred cccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC
Q 010840 204 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT 283 (499)
Q Consensus 204 ~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~ 283 (499)
.+.+.. +..++..+...+..+.+...+.+..+....+....+. ...++. .--..
T Consensus 207 ~~~~~~----------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 260 (437)
T TIGR00792 207 KKLSLK----------------------QIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYF---TYVLGD-PELFS 260 (437)
T ss_pred cCCCHH----------------------HHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeE---eeecCC-hHHHH
Confidence 000000 0001110001111122223333333222111111111 111110 00011
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++..+..+..++..|+..+ +.+|. ...+-+.+|.++.+++++...+..
T Consensus 261 ~~~~~~~i~~ii~~~~~~~----l~~r~-------g~~~~~~~~~~~~~~~~~~~~~~~--------------------- 308 (437)
T TIGR00792 261 YMGSIAIVAGLIGVLLFPR----LVKKF-------GRKILFAGGILLMVLGYLIFFFAG--------------------- 308 (437)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 2333344445555555444 34443 223446677777776665544321
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++.+...++.+++.....+....+..+.+| ++.+|.++|++.+...+|..+++.+...+.
T Consensus 309 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll 378 (437)
T TIGR00792 309 -SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLIL 378 (437)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445556788899998889998888888765 667899999999988888888888877654
No 29
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.12 E-value=4.7e-09 Score=115.26 Aligned_cols=277 Identities=10% Similarity=-0.064 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCCh
Q 010840 7 CCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 86 (499)
Q Consensus 7 ~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~ 86 (499)
.++.++++.+.+.+.++ +.. +...+.....++++.++++.+|.+++.+++.++|.+..+
T Consensus 57 Il~~~ii~~lG~~llai-~a~-------------------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~- 115 (654)
T TIGR00926 57 ILYLSIVYVVGHALLSF-GAI-------------------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE- 115 (654)
T ss_pred HHHHHHHHHHHHHHHHh-ccC-------------------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC-
Confidence 44556666666666655 221 124445667778899999999999999999999998755
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHH-------HHHHHHHHHHHHHHHHHhccccccccCCCCChH
Q 010840 87 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGS-------AFGALAIAMGISNMLFFIGTPLYRHRLPGGSPL 158 (499)
Q Consensus 87 ~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~-------~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl 158 (499)
.+++++.+++|||..+.+.+. .+++..+..... +.. -++..++.+++.++.++.+...++..++.+.+.
T Consensus 116 --~~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g 192 (654)
T TIGR00926 116 --ERQLSLRSRFFSFFYFAINAG-SLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG 192 (654)
T ss_pred --ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence 266678999999999999985 455555544443 332 234788888888889999988887777766655
Q ss_pred HHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccc--cccchhhH
Q 010840 159 TRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVEE 236 (499)
Q Consensus 159 ~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~--~~~~~ve~ 236 (499)
..+.++.......++. +..+ .+... ...|-. ....++++
T Consensus 193 s~l~~v~~vi~~a~~~------------------------~~~~------~~~~~---------~~~~ld~a~~~~~~~~ 233 (654)
T TIGR00926 193 NIVSKVIKCIVTALRK------------------------RFST------RSEHW---------PLHWLDYAKDKHDIRM 233 (654)
T ss_pred cHHHHHHHHHHHHHHH------------------------hhcc------CCccc---------chhHHHHhccccccch
Confidence 5566665544332110 0000 11100 012211 23444567
Q ss_pred hHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCC
Q 010840 237 VKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPR 316 (499)
Q Consensus 237 ~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~ 316 (499)
++...++++++...+.+|+.+.|.......|+.++++..+.+...+...+.++++-.++++++...+.+|+..++.++
T Consensus 234 V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~-- 311 (654)
T TIGR00926 234 IRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC-- 311 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc--
Confidence 999999999999999999999999999999999999987777777778999999999999999999999999998654
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010840 317 GASQLQRVGIGLAVSILSVIWAGIFERYRRNYA 349 (499)
Q Consensus 317 ~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~ 349 (499)
-.+++++.-+.+.++++++.+++++..+.+.-
T Consensus 312 -~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 312 -GTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999988766543
No 30
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.11 E-value=6.3e-08 Score=102.92 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccc
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHG 122 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g 122 (499)
....++++=.+.++|.|+.-|...++++|.++++. |.....++-.+..+|.++++.++.++. +..|
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 192 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCC
Confidence 34566677788999999999999999999998532 567788888888999998877765442 3579
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 010840 123 WGSAFGALAIAMGISNMLF 141 (499)
Q Consensus 123 ~~~~F~i~~~~m~l~~i~f 141 (499)
|++.|.+.++..++.++..
T Consensus 193 Wr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 193 WRYMFASEAIPALLFLMLL 211 (479)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999988777666655433
No 31
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.11 E-value=3.7e-08 Score=101.85 Aligned_cols=260 Identities=11% Similarity=0.076 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.+++...+.+++.+...|...++..|. .++ +...+.+.....++|..+|+.+++++.+++||+..|.+.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~~-------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~ 164 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW-QKQ-------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWIL 164 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH-Hhh-------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 355666677778888898999888877764 211 345677778888999999999999999999999999877
Q ss_pred HHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccccccccccc
Q 010840 131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 210 (499)
Q Consensus 131 ~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld 210 (499)
++..++.++... .++ +++|++++- + + . +...
T Consensus 165 ~~~~~~~~~~~~-~~~---~~~~~~~~~-----------~------~--~---------------------~~~~----- 195 (382)
T PRK11128 165 TAGVASMLLGQL-LRP---TIMPQGESR-----------Q------Q--E---------------------SAGW----- 195 (382)
T ss_pred HHHHHHHHHHHH-ccC---CCCCccccc-----------c------c--c---------------------cccc-----
Confidence 765554443322 111 111111000 0 0 0 0000
Q ss_pred ceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhH
Q 010840 211 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPG 290 (499)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~ 290 (499)
.. ..+..+--++..+.+...+.+..+.+..+.+....++...+ +-..+.+..++.
T Consensus 196 -------------~~--------~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s----~~~~g~~~~~~~ 250 (382)
T PRK11128 196 -------------PA--------WKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYS----ASTIGYLWSLGV 250 (382)
T ss_pred -------------ch--------HHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCC----HhHHHHHHHHHH
Confidence 00 00111111122223333333444434334333222221110 001123334444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHH
Q 010840 291 LSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL 370 (499)
Q Consensus 291 i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wl 370 (499)
+..++...+.++ +.+| .+..+.+.+++++.+++++..+.. .+.++.
T Consensus 251 ~~~~~~~~~~g~----l~~r-------~~~~~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 296 (382)
T PRK11128 251 VAEVLIFAFSNR----LFRR-------WSARDLLLLSAICGVVRWGLMGST-----------------------TALPWL 296 (382)
T ss_pred HHHHHHHHHHHH----HHHH-------CCHHHHHHHHHHHHHHHHHHHHhh-----------------------hhHHHH
Confidence 444444444443 3344 344455777777777766554432 235666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHH-HHhHHHHHHHhhhhhhhc
Q 010840 371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSIIK 427 (499)
Q Consensus 371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~-l~~a~g~~l~~~l~~~v~ 427 (499)
+...++.++++.+..+....++.++.|. .++.++++.. +..++|..+|+.+.+.+.
T Consensus 297 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ig~~i~G~l~ 353 (382)
T PRK11128 297 IVIQILHCGTFTVCHLAAMRYIAARPGS-EVIRLQALYSALAMGGSIAIMTVLSGFLY 353 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999887544 4588888876 555666666666665543
No 32
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.10 E-value=9.4e-08 Score=98.08 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.++|.+...+...+++.|.+++++ |.+.+.+++...++|..+++.+.+++.++.+|+..|.+.+
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4567777888999999999999999999887432 5788999999999999999999999988899999998877
Q ss_pred HHHHHHHHHHH
Q 010840 132 IAMGISNMLFF 142 (499)
Q Consensus 132 ~~m~l~~i~f~ 142 (499)
+..++..+...
T Consensus 167 ~~~~~~~~~~~ 177 (385)
T TIGR00710 167 LAGILLSALIF 177 (385)
T ss_pred HHHHHHHHHHH
Confidence 77666655444
No 33
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.09 E-value=2.7e-08 Score=117.30 Aligned_cols=284 Identities=12% Similarity=0.001 Sum_probs=158.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.++++..+.++|.+++.|...+++.|.+++++ +..+..+..++.++|.++|+.+++++.+..||+..|.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 45678889999999999999999999999998643 678999999999999999999999998889999998444
Q ss_pred HHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccccccccccc
Q 010840 131 AIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLD 210 (499)
Q Consensus 131 ~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld 210 (499)
++..++++++.+.- ...+++....+ +. . +...
T Consensus 181 ~~~~~~~~~~~~~~----~~~~~~~~~~~-----------------~~-~--------------------------~~~~ 212 (1140)
T PRK06814 181 MGIAVLGWLASLFI----PKTGNAAPDLK-----------------ID-R--------------------------NIIR 212 (1140)
T ss_pred HHHHHHHHHHHhhC----CCCCCCCCCCe-----------------ec-c--------------------------chHH
Confidence 44333333322211 11111100000 00 0 0000
Q ss_pred ceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecC---Ccccc
Q 010840 211 KAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV---TCMPV 287 (499)
Q Consensus 211 ~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~---~~l~~ 287 (499)
... .. ...+++--.+..+.+...+++.+.....+.+..+... .+ +.++ .++.+
T Consensus 213 ~~~----------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~---g~~~~~~g~~~~ 268 (1140)
T PRK06814 213 STI----------TL--------LKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE---TL---GGDENVATLFLA 268 (1140)
T ss_pred HHH----------HH--------HHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH---Hc---CCchHHHHHHHH
Confidence 000 00 0001000011112222233333333332322222211 11 1122 23445
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH-hhhhhhhcCCcccccCCCCcch
Q 010840 288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY-RRNYAISHGYEFSFLTAMPDLS 366 (499)
Q Consensus 288 ~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~-r~~~~~~~g~~~~~~~~~~~~s 366 (499)
...+..++...+..++ .++. ...+.+.+|.++.+++.+.+++.... ......-... .. .... .+
T Consensus 269 ~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~~-~~ 333 (1140)
T PRK06814 269 VFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI-LV--FLSK-RH 333 (1140)
T ss_pred HHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcccccccccccccch-hh--hhcc-cc
Confidence 5555555555555443 2221 12233455555555444433321000 0000000000 00 0001 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.|+++..+++.|++..+..+....++.+.+|++++|.++|++.+...+|..+++.+...+.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778899999999999999999999999999999999999999999999888877654
No 34
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.07 E-value=6.7e-08 Score=98.66 Aligned_cols=262 Identities=11% Similarity=0.073 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc--------
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-------- 122 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-------- 122 (499)
+.+.++....+.+++.+...+...+++.|.+++++ |..+..+...+.++|.++++.+++++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 34445545556678888889999999999996432 5788899999999999999999998887788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCccccc
Q 010840 123 WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAH 202 (499)
Q Consensus 123 ~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 202 (499)
|+..|.+.++..+++++..+...|.-.+.++++++. . ...+
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~---~----~~~~-------------------------------- 196 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPL---T----QAVL-------------------------------- 196 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhH---H----HHHH--------------------------------
Confidence 999999888877766554332222100000000000 0 0000
Q ss_pred ccccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecC
Q 010840 203 TDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPV 282 (499)
Q Consensus 203 ~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~ 282 (499)
.++ .++-..|...++..+.+...++...+.+..+.+..+..++ +.++
T Consensus 197 ---------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------g~~~ 243 (356)
T TIGR00901 197 ---------------------KPI-----REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM-------GFSK 243 (356)
T ss_pred ---------------------HHH-----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCH
Confidence 000 0000001111233333344445555555444444333221 1233
Q ss_pred Ccc---cchhH-HHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc
Q 010840 283 TCM---PVFPG-LSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSF 358 (499)
Q Consensus 283 ~~l---~~~n~-i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~ 358 (499)
+.. ..... +..++..++.. .+.+| .+..+.+.+++++.+++.......... ....+
T Consensus 244 ~~~g~~~~~~~~~~~~~g~~~~g----~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~----- 303 (356)
T TIGR00901 244 EEIALVAKINGLLGAILGGLIGG----IIMQP-------LNILYALLLFGIVQALTNAGFVWLASN----GHHDG----- 303 (356)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH----HHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHhc----Ccccc-----
Confidence 322 22222 12222222222 22344 344455677777766665544433110 00000
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhH
Q 010840 359 LTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG 413 (499)
Q Consensus 359 ~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a 413 (499)
..+ .+.++++...++.++++.+..+....+..+.+|+++||.++|++....+
T Consensus 304 --~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 --ITF-PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred --ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 001 2345566778899999999999999999999999999999999876543
No 35
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.07 E-value=4.7e-08 Score=104.86 Aligned_cols=86 Identities=17% Similarity=0.092 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.++++-.+.++|.|++.|...+.+.+.+.++ + +|.+++.++....++|..+|+.+++++.++.||++.|.+.
T Consensus 93 ~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~--~---~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~ 167 (495)
T PRK14995 93 TASWLIATRALLAIGAAMIVPATLAGIRATFTEE--K---QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN 167 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 3456777888999999999998888887777532 2 2678999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHH
Q 010840 131 AIAMGISNMLF 141 (499)
Q Consensus 131 ~~~m~l~~i~f 141 (499)
....++.++..
T Consensus 168 ~~~~~~~~~l~ 178 (495)
T PRK14995 168 VPIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHHH
Confidence 66655554433
No 36
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.06 E-value=4.6e-08 Score=104.03 Aligned_cols=84 Identities=19% Similarity=0.144 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
...++++-.+.++|.|...|...+++.|.++++ +|.+++.+++.+.++|..+++.+++++.+++||++.|.+.+
T Consensus 90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 456777888899999999999999999998742 26788999999999999999999999999999999998876
Q ss_pred HHHHHHHHHH
Q 010840 132 IAMGISNMLF 141 (499)
Q Consensus 132 ~~m~l~~i~f 141 (499)
...++.++..
T Consensus 164 ~~~~~~~~~~ 173 (485)
T TIGR00711 164 PIGIIVVVVA 173 (485)
T ss_pred HHHHHHHHHH
Confidence 6555554433
No 37
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.05 E-value=1.4e-07 Score=98.76 Aligned_cols=76 Identities=21% Similarity=0.401 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++-.+.++|.|+.-+...++..|.++++. |.....++..+.++|.++++.+.+++.+..||+..|.++.
T Consensus 106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 4567777889999999999999999999987432 5678888999999999999999999888899999998755
Q ss_pred HH
Q 010840 132 IA 133 (499)
Q Consensus 132 ~~ 133 (499)
+.
T Consensus 180 ~~ 181 (426)
T PRK12307 180 LP 181 (426)
T ss_pred HH
Confidence 43
No 38
>TIGR00895 2A0115 benzoate transport.
Probab=99.02 E-value=1.4e-07 Score=96.76 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.++|.|...+...++..|.+++++ |...++++..+.++|..+++.+.+++.++.||+..|.+.+
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~ 178 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG 178 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence 3467778889999999999999999999987422 6788999999999999999999999988899999998876
Q ss_pred HHHHHHHH
Q 010840 132 IAMGISNM 139 (499)
Q Consensus 132 ~~m~l~~i 139 (499)
+..++..+
T Consensus 179 ~~~~~~~~ 186 (398)
T TIGR00895 179 IAPLLLLL 186 (398)
T ss_pred hHHHHHHH
Confidence 54444433
No 39
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.02 E-value=3e-07 Score=96.95 Aligned_cols=80 Identities=11% Similarity=0.147 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.+++...+.+++.|..-+...+.+.+.+++++ |.....+++.+.++|..+++.+.+++.+.+||++.|.+.+
T Consensus 111 ~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~ 184 (434)
T PRK11663 111 LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAG 184 (434)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3445555566778888888888999999987432 6788999999999999999999999988899999998877
Q ss_pred HHHHHH
Q 010840 132 IAMGIS 137 (499)
Q Consensus 132 ~~m~l~ 137 (499)
+..++.
T Consensus 185 i~~~~~ 190 (434)
T PRK11663 185 IIAIVV 190 (434)
T ss_pred HHHHHH
Confidence 655443
No 40
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.02 E-value=4.6e-07 Score=93.02 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
+.+++...+.+++.+...+...++..|.+++++ |.+.+++++...++|..+++.+.+++.+..+|+..|.+.++
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 456667778899999999999999999886432 57889999999999999999999999888999999988777
Q ss_pred HHHHHHHHH
Q 010840 133 AMGISNMLF 141 (499)
Q Consensus 133 ~m~l~~i~f 141 (499)
..++..+..
T Consensus 154 ~~~~~~~~~ 162 (377)
T PRK11102 154 AAILAAALV 162 (377)
T ss_pred HHHHHHHHH
Confidence 666655433
No 41
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.02 E-value=1.5e-07 Score=110.98 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 120 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~ 120 (499)
.+.++++..+.+++.|.+-|...+++.|.+++++ |..+++++..+.++|.++|+.+++++.+.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888889999999999999999999997643 67899999999999999999999998764
No 42
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.01 E-value=4e-07 Score=93.17 Aligned_cols=84 Identities=13% Similarity=0.208 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~ 133 (499)
.+++.-.+.+.+.+..-|...++..|..++++ | .+.....+.+...++|..+++.+++++.+..||++.|.+.++.
T Consensus 89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 89 LLLVLGVLLSSFASTANPQLFALAREHADRTG-R---EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-h---hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 34444444555556666777777666654221 1 1122357778888999999999999998889999999988877
Q ss_pred HHHHHHHH
Q 010840 134 MGISNMLF 141 (499)
Q Consensus 134 m~l~~i~f 141 (499)
.++..+..
T Consensus 165 ~~~~~~~~ 172 (375)
T TIGR00899 165 FVLCGVLV 172 (375)
T ss_pred HHHHHHHH
Confidence 66665543
No 43
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.00 E-value=5e-07 Score=96.88 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGA 129 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~-~~g~~~~F~i 129 (499)
+.+.+.+...+.+++.+...+...++..|.+++++ |.++..+.-.+.++|.++++.+..++.+ ..||+..|.+
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 45667767778888999999999999999987432 5677888889999999999999999887 4699999998
Q ss_pred HHHHHHHHHHHH
Q 010840 130 LAIAMGISNMLF 141 (499)
Q Consensus 130 ~~~~m~l~~i~f 141 (499)
.++.+++..+..
T Consensus 180 ~a~l~ll~~l~~ 191 (491)
T PRK11010 180 MAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHH
Confidence 887766665433
No 44
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.00 E-value=4.7e-07 Score=94.26 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.+++.-.+.+++.|...|...++..|.+++++ |.....+++.+.|+|.++++.+.+++.+..||++.|.+.
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~ 180 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAA 180 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 35677778889999999999999999999986432 577899999999999999999999999889999999887
Q ss_pred HHHHHHHH
Q 010840 131 AIAMGISN 138 (499)
Q Consensus 131 ~~~m~l~~ 138 (499)
++..++.+
T Consensus 181 ~~l~~~~~ 188 (394)
T PRK10213 181 AVMGVLCI 188 (394)
T ss_pred HHHHHHHH
Confidence 76555443
No 45
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.99 E-value=6.7e-07 Score=99.74 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 402 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~ 402 (499)
-+.+++++.+++++..++. .+.++++...++.++......+....++.+..|.+.|+
T Consensus 627 ~l~~~~~lsai~~ll~~~~-----------------------~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rg 683 (742)
T TIGR01299 627 MLAGSMVLSCISCFFLSFG-----------------------NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRA 683 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3667777777777665543 12344455556777777778888999999999999999
Q ss_pred HHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 403 IGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 403 ~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
..+|+......+|..+|+.++..+
T Consensus 684 ta~Gi~~~~~rlGaiigp~i~g~L 707 (742)
T TIGR01299 684 TAFGFLNALCKAAAVLGILIFGSF 707 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887653
No 46
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.99 E-value=6.7e-07 Score=92.61 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
..++++..+.+++.|...+...++..|.+++++ |.+..++++...++|..+++.+.+++.+..||+..|.+.++
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~ 165 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA 165 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 455666677888888888888889998887432 67888999999999999999999998888999999988777
Q ss_pred HHHHHHHH
Q 010840 133 AMGISNML 140 (499)
Q Consensus 133 ~m~l~~i~ 140 (499)
..++..+.
T Consensus 166 ~~~i~~~~ 173 (392)
T PRK10473 166 MGILVLLL 173 (392)
T ss_pred HHHHHHHH
Confidence 66655543
No 47
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.96 E-value=8.2e-07 Score=92.24 Aligned_cols=69 Identities=13% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCccchhhhhhccCCCCChhhhhhhhhhH-hHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 010840 68 GIRPCVSSFGADQFDERSKDYKTHLDRFF-NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 141 (499)
Q Consensus 68 ~~kp~~~a~~~dq~~~~~~~~~~~~~~~f-~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f 141 (499)
...|...++..|..++++ | ....+ .+...+.++|..+++.+++++.++.||+..|.+.++..++..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 121 TANPQMFALAREHADKTG-R----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred hhHHHHHHHHHHHhhhcc-c----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 456666666666554221 1 12233 588889999999999999999988999999988777665554433
No 48
>TIGR00898 2A0119 cation transport protein.
Probab=98.95 E-value=9.4e-07 Score=94.78 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.++|.|+..+...+++.|.++++. |.....++..+.++|.++++.++.++.+ |++.|.+.+
T Consensus 180 ~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~ 250 (505)
T TIGR00898 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVS 250 (505)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 4567778889999999999999999999997533 4567777788888999999888777754 999998887
Q ss_pred HHHHHHHHHHH
Q 010840 132 IAMGISNMLFF 142 (499)
Q Consensus 132 ~~m~l~~i~f~ 142 (499)
+..++..+..+
T Consensus 251 i~~~~~~~~~~ 261 (505)
T TIGR00898 251 LPTFLFFLLSW 261 (505)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 49
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.94 E-value=1.1e-06 Score=91.39 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=61.2
Q ss_pred HHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 010840 57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 136 (499)
Q Consensus 57 ~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l 136 (499)
+...+.++|.|++.|...+++.|.+++++ |.++..+.....++|.++|+.+++++.+. .|...|.+.+...++
T Consensus 93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~ 165 (393)
T PRK11195 93 LAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLL 165 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34567899999999999999999998532 67889999999999999999999999764 577777776665554
Q ss_pred HHH
Q 010840 137 SNM 139 (499)
Q Consensus 137 ~~i 139 (499)
+.+
T Consensus 166 ~~~ 168 (393)
T PRK11195 166 AAL 168 (393)
T ss_pred HHH
Confidence 443
No 50
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.94 E-value=7.2e-07 Score=93.47 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
...++++-.+.++|.|..-+...+...|.+++++ +.+...++..+.++|..+|+.+++++.++.||++.|.+.+
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4566777788888887665666667778877432 4677999999999999999999999988889999998887
Q ss_pred HHHHHHHHH
Q 010840 132 IAMGISNML 140 (499)
Q Consensus 132 ~~m~l~~i~ 140 (499)
+..+++++.
T Consensus 178 ~~~~i~~~~ 186 (413)
T PRK15403 178 VMGLIAFVG 186 (413)
T ss_pred HHHHHHHHH
Confidence 776666553
No 51
>PRK09848 glucuronide transporter; Provisional
Probab=98.93 E-value=4.6e-07 Score=95.83 Aligned_cols=88 Identities=8% Similarity=0.032 Sum_probs=66.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
+..+-+.+|.++.+++.+...+.. . .+.++.+...++.++|+.+..+...++..+.+|+
T Consensus 292 g~~~~~~~g~~~~~i~~~~~~~~~--------------------~-~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~ 350 (448)
T PRK09848 292 GKKNTFLIGALLGTCGYLLFFWVS--------------------V-WSLPVALVALAIASIGQGVTMTVMWALEADTVEY 350 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcC--------------------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 444557778877777765544320 1 3456666678899999999999999999998886
Q ss_pred h-------hhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 399 A-------MKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 399 ~-------mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+ .+|.++|++.+..-+|..+|+.+...+-
T Consensus 351 ~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 351 GEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred hHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5699999999999999998888776654
No 52
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.93 E-value=1.6e-06 Score=91.83 Aligned_cols=82 Identities=11% Similarity=0.208 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
.+.+++...+.+++.|...|.......+.+++++ |....++++.+.++|+ +.++++...+....||++.|.+.
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~ 193 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMP 193 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 4566667778888899888888888888886422 5778899999999986 55665544443345999999987
Q ss_pred HHHHHHHHH
Q 010840 131 AIAMGISNM 139 (499)
Q Consensus 131 ~~~m~l~~i 139 (499)
++..++..+
T Consensus 194 ~~~~~~~~~ 202 (452)
T PRK11273 194 AFAAILVAL 202 (452)
T ss_pred HHHHHHHHH
Confidence 776655433
No 53
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.92 E-value=2.5e-07 Score=94.08 Aligned_cols=83 Identities=13% Similarity=0.077 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.++|.|..-+...+...+.++++ |.....++..+.++|.++++.+.+.+.+..||++.|.+.+
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~ 163 (377)
T TIGR00890 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMG 163 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHH
Confidence 456667777888888887777777777666421 4678899999999998876666666667789999999887
Q ss_pred HHHHHHHHHH
Q 010840 132 IAMGISNMLF 141 (499)
Q Consensus 132 ~~m~l~~i~f 141 (499)
+..++..+..
T Consensus 164 ~~~~~~~~~~ 173 (377)
T TIGR00890 164 IIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHH
Confidence 7766655433
No 54
>PRK11043 putative transporter; Provisional
Probab=98.91 E-value=1.5e-06 Score=90.29 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.++|.+...+...++..|.+++++ +.+.++......++|..+++.+++++.+.+||+..|.+.+
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3456666777788888777777888888887432 4567788888889999999999999998999999998877
Q ss_pred HHHHHHHHHH
Q 010840 132 IAMGISNMLF 141 (499)
Q Consensus 132 ~~m~l~~i~f 141 (499)
+..++..+..
T Consensus 168 ~~~~~~~~~~ 177 (401)
T PRK11043 168 AITLLLILPT 177 (401)
T ss_pred HHHHHHHHHH
Confidence 7666555433
No 55
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.91 E-value=3.7e-07 Score=93.47 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccchH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWG 124 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~~ 124 (499)
..++++..+.++|.|...+...+++.|.+++++ |.....++..+.++|.++++.+...+. +..+|+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 356777788899999999999999999887533 567888999999999999988776653 357899
Q ss_pred HHHHHHHHHHHHHHH
Q 010840 125 SAFGALAIAMGISNM 139 (499)
Q Consensus 125 ~~F~i~~~~m~l~~i 139 (499)
+.|.+.++..+++.+
T Consensus 171 ~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 171 IPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999887766555443
No 56
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.90 E-value=1.2e-06 Score=90.45 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 127 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F 127 (499)
.+.+.++..+.++|.|...|...+...|..+++ +|.+.+++++.+.|+|..+|+.+.+++.+...+...+
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 94 FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 456777778889999988888777777776532 2578899999999999999999999987654333333
No 57
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.89 E-value=4.9e-06 Score=86.66 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 129 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i 129 (499)
+.+.+++...+.++..+...|...++..|.+++++ |.++..+..++.++|.++++.+..++.+. .||+..|.+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 44555555566778888899999999999976432 57788888889999999999988888775 499999998
Q ss_pred HHHHHHHHHHH
Q 010840 130 LAIAMGISNML 140 (499)
Q Consensus 130 ~~~~m~l~~i~ 140 (499)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 88776655543
No 58
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.87 E-value=4.5e-06 Score=86.45 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.+++.|...+...++..|.+++++ +.....++..+.++|.++++.+.+++.+..||+..|.+.+
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 3456677778888888777777778888775422 4667788888899999999999999988899999998876
Q ss_pred HHHHHHHH
Q 010840 132 IAMGISNM 139 (499)
Q Consensus 132 ~~m~l~~i 139 (499)
+..++..+
T Consensus 170 ~~~~~~~~ 177 (394)
T PRK11652 170 LLGAGVTF 177 (394)
T ss_pred HHHHHHHH
Confidence 65554433
No 59
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.87 E-value=2.1e-06 Score=89.33 Aligned_cols=78 Identities=12% Similarity=0.216 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA 131 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-g~~~~F~i~~ 131 (499)
..++++-.+.++|.|..-+...+.+.+.+++ + |......+..+.++|..+++.+++++.++. +|+..|.+.+
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-~------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~ 170 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-R------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWA 170 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-c------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3566778889999999889888888887752 1 467888888899999999999999987765 8988876544
Q ss_pred HHHHHH
Q 010840 132 IAMGIS 137 (499)
Q Consensus 132 ~~m~l~ 137 (499)
+..++.
T Consensus 171 ~~~~~~ 176 (393)
T PRK09705 171 LPAVVA 176 (393)
T ss_pred HHHHHH
Confidence 443333
No 60
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.87 E-value=4.6e-07 Score=92.23 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~-~~~~~i~~~~g~~~~F~i~ 130 (499)
.+.++++..+.+++.|...|...++..|.+++++ |...+.++..+.++|..+++ ++...+.+..+|+..|.+.
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVP 156 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 4567778888999999999999999999987532 57788899999999999999 5777777788999999887
Q ss_pred HHHHHHHHHHH
Q 010840 131 AIAMGISNMLF 141 (499)
Q Consensus 131 ~~~m~l~~i~f 141 (499)
++..++..+..
T Consensus 157 ~~~~~~~~~~~ 167 (379)
T TIGR00881 157 GIIAIIVSLIC 167 (379)
T ss_pred HHHHHHHHHHH
Confidence 77665544433
No 61
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.86 E-value=5.8e-06 Score=87.76 Aligned_cols=302 Identities=12% Similarity=0.043 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH--hhc---------
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--QME--------- 120 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i--~~~--------- 120 (499)
...+.+++.+.-++.....+...++++|..++++.+ ++.++.|+.+..|+|+++|+.++++. .+.
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 356677777788888988999999999999875422 35799999999999999999988875 111
Q ss_pred ----cchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCC
Q 010840 121 ----HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKG 196 (499)
Q Consensus 121 ----~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 196 (499)
.+++..|.+.++.++++.++-...-|.++..+++..+.. + ++.. + +
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---------------~---------~~~~--~---~- 239 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---------------E---------AAPP--S---K- 239 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---------------h---------cccc--c---c-
Confidence 167889999999888888766654443321111100000 0 0000 0 0
Q ss_pred CcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccc
Q 010840 197 SGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHM 275 (499)
Q Consensus 197 ~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i 275 (499)
+. ..+.+ +. -|+ .-.+--|.+.+++.+-.+.-+=|..+.+..|.++-+.- +-+.+-
T Consensus 240 -----~~-~~~~~---~~----------i~~----~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~ 296 (477)
T TIGR01301 240 -----HG-EEAFF---GE----------LFG----AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ 296 (477)
T ss_pred -----cc-hhhhH---HH----------HHH----HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc
Confidence 00 00000 00 000 00011133444555555555555666666666654321 111000
Q ss_pred c-Ceeec---CCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhH-HHHHHHHHHHHHHHHHHHHHhh---h
Q 010840 276 G-KLKLP---VTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRV-GIGLAVSILSVIWAGIFERYRR---N 347 (499)
Q Consensus 276 ~-g~~ip---~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri-~iG~~l~~l~~~~~a~~e~~r~---~ 347 (499)
. .++-- ..+-...|.+... ++..++.++.+|. +..++. .++.++.++|++...++..... .
T Consensus 297 ~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~-------g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~ 365 (477)
T TIGR01301 297 GAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGW-------GAGKRLWGIVNIILAICLAATVLVTYVAKNSRY 365 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 0 00000 1122222333322 3333444444542 222334 6888888888888776643100 0
Q ss_pred hhhhcCCcccccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--hhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 348 YAISHGYEFSFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD--AMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 348 ~~~~~g~~~~~~~~~~~~s-~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~--~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
....++.. .++.. .++.+..+.+.|++-....-.=++.+.+..|+ +-.|.+||+..+...+...+.++...
T Consensus 366 ~~~~~~~~------~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g 439 (477)
T TIGR01301 366 YDGDGESL------PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSG 439 (477)
T ss_pred cccccccc------CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 00001111 11122 36667788999999999999999999999995 45699999999999999999887766
Q ss_pred hhc
Q 010840 425 IIK 427 (499)
Q Consensus 425 ~v~ 427 (499)
.+.
T Consensus 440 ~~~ 442 (477)
T TIGR01301 440 PWD 442 (477)
T ss_pred HHH
Confidence 644
No 62
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.85 E-value=6.9e-07 Score=95.45 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++..+.+++.|+..+...++..|.+++++ |...+.+++.+.++|..+++.+.+++.++.||++.|.+..
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~ 181 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI 181 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 4567777888999999999999999999987422 5778889999999999999999999988999999998754
Q ss_pred HHHH
Q 010840 132 IAMG 135 (499)
Q Consensus 132 ~~m~ 135 (499)
+..+
T Consensus 182 ~~~~ 185 (496)
T PRK03893 182 LPII 185 (496)
T ss_pred HHHH
Confidence 4333
No 63
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.84 E-value=5.2e-06 Score=87.17 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=87.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010840 320 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 399 (499)
Q Consensus 320 ~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~ 399 (499)
..+-+.++.++.++++........ .. .+.+.++...++.++++.+..+....++.+..|++
T Consensus 280 ~r~~l~~~~~~~~v~~~l~~~~~~------------------~~-~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~ 340 (418)
T TIGR00889 280 IKKVMLLSLVAWALRFGFFAYGDP------------------EY-FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH 340 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCc------------------ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 334466777777666655443210 00 12333455678999999999999999999999999
Q ss_pred hhHHHHhHHH-HHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 400 MKSIGSAYAA-LAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 400 mr~~~~gl~~-l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
.||.++|+.. ...++|..+|+.+...+..... +++.+ +.+.-|...+++.++..++++++.| ++
T Consensus 341 ~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g----~~~~~--------~~~~~f~~~~~~~~i~~~l~~~~~~---~~ 405 (418)
T TIGR00889 341 IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF----AYGTF--------DWQTMWLFFAGYIAILAVLFMIFFK---YS 405 (418)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc----cccCC--------chHHHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 9999999996 5678888888888765442211 00000 1234566666776666666655554 33
Q ss_pred cccccCCchhh
Q 010840 479 SEQKHGNDYEV 489 (499)
Q Consensus 479 ~~~~~~~~~~~ 489 (499)
.++-++||+|+
T Consensus 406 ~~~~~~~~~~~ 416 (418)
T TIGR00889 406 HNAIKVDDRDV 416 (418)
T ss_pred ccCCCCccccc
Confidence 45556666664
No 64
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.84 E-value=2.7e-06 Score=87.94 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.++++-.+.+++.|...+...+...|.+++++ |.+.+..+..+.++|..+++.+++++.+..||++.|.+.+
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 4567777888999888887877777777765422 4567888888999999999999999988899999999888
Q ss_pred HHHHHHHH
Q 010840 132 IAMGISNM 139 (499)
Q Consensus 132 ~~m~l~~i 139 (499)
+..++..+
T Consensus 165 ~~~~~~~~ 172 (382)
T PRK10091 165 VFNIAVLA 172 (382)
T ss_pred HHHHHHHH
Confidence 76655544
No 65
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.81 E-value=2.8e-07 Score=98.27 Aligned_cols=84 Identities=10% Similarity=0.035 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010840 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (499)
Q Consensus 55 ~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m 134 (499)
....+.+++++.+.......++..|+.+ ++++ ......++.|.+.++|.++|+.+++++.+.++|+..|.+.++..
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ 198 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL 198 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 3346788999999999999999999998 3322 24567789999999999999999999999899999999888877
Q ss_pred HHHHHHHH
Q 010840 135 GISNMLFF 142 (499)
Q Consensus 135 ~l~~i~f~ 142 (499)
++..+..+
T Consensus 199 ll~~~~~~ 206 (468)
T TIGR00788 199 LLQLFVSN 206 (468)
T ss_pred HHHHHHHH
Confidence 77754433
No 66
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.81 E-value=6.5e-06 Score=88.24 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccchHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 125 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~~~ 125 (499)
++.++-.+.++|.|+.-|+..+++.|.++++. |.....+...+.++|..+|..+...+. .++||++
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 46777788999999999999999999987543 455677777788888888876654432 2689999
Q ss_pred HHHHHHHH
Q 010840 126 AFGALAIA 133 (499)
Q Consensus 126 ~F~i~~~~ 133 (499)
.|.+.++.
T Consensus 194 ~f~i~~~~ 201 (490)
T PRK10642 194 PFFIALPL 201 (490)
T ss_pred HHHHHHHH
Confidence 99886543
No 67
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.81 E-value=1.8e-06 Score=88.98 Aligned_cols=81 Identities=14% Similarity=0.261 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc--hHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGA 129 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g--~~~~F~i 129 (499)
.+.++++..+.++|.|+..+...++..|.+++++ |.....++..+.++|..+++.+.+.+.+..+ |++.|.+
T Consensus 100 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~ 173 (405)
T TIGR00891 100 YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI 173 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 3566778889999999999999999999987532 5788999999999999999999998877666 9999987
Q ss_pred HHHHHHHHH
Q 010840 130 LAIAMGISN 138 (499)
Q Consensus 130 ~~~~m~l~~ 138 (499)
.++..++.+
T Consensus 174 ~~~~~~~~~ 182 (405)
T TIGR00891 174 SILPIIFAL 182 (405)
T ss_pred HHHHHHHHH
Confidence 665544443
No 68
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.80 E-value=1.8e-06 Score=90.51 Aligned_cols=135 Identities=14% Similarity=0.133 Sum_probs=84.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840 285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 364 (499)
Q Consensus 285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~ 364 (499)
+.+++.+..++..++..+ +.+|. +..+.+.+|.++.+++++..++.
T Consensus 267 ~~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~~~~~~~l~~~~~~l~~~~----------------------- 312 (420)
T PRK09528 267 LNSFQVFLEALIMFFAPF----IINRI-------GAKNALLLAGTIMAVRIIGSGFA----------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------CcchhhHHHHHHHHHHHHHHHhc-----------------------
Confidence 344444444455444443 34443 23334666777767666555432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhH-HHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl-~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
.++++++...++.+++.....+...+++.+..|++.++...+. +.....+|..+++.+...+.... +|
T Consensus 313 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~--------G~--- 381 (420)
T PRK09528 313 TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI--------GF--- 381 (420)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh--------Cc---
Confidence 2356777778889998888888888999999999999987655 55567778878777766543211 12
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
...|...+++.++..++.+..
T Consensus 382 -------~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 382 -------QGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666555544443
No 69
>PRK03699 putative transporter; Provisional
Probab=98.80 E-value=6e-06 Score=85.73 Aligned_cols=83 Identities=6% Similarity=0.117 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~-~~~g~~~~F~i~ 130 (499)
.+.++++..+.+++.|...+...+.+.+.+++++ |.......+...++|+.+++.+.+++. +..||+..|.+.
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~ 168 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACI 168 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 4566777788899999888999999999886422 456667777888899999998888764 457999999887
Q ss_pred HHHHHHHHHH
Q 010840 131 AIAMGISNML 140 (499)
Q Consensus 131 ~~~m~l~~i~ 140 (499)
++..++..+.
T Consensus 169 ~~~~~~~~~~ 178 (394)
T PRK03699 169 GLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 70
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.77 E-value=4e-06 Score=89.45 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.++++...++.++++....+...+++.+.+| ++..|.+.|.+.+..-+|..+|+.+...+-
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788999999999999999999987 555777999999988888888877776654
No 71
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.77 E-value=1.7e-06 Score=90.93 Aligned_cols=308 Identities=12% Similarity=0.076 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH----hhc---cch
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI----QME---HGW 123 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i----~~~---~g~ 123 (499)
+...+++...+..++...+..+..+++.|..++.++ |.+...+...+.++|.++...+.+.+ ++. .+|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 444557777778999999999999999999886542 46777787778888886555444433 322 168
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccc
Q 010840 124 GSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHT 203 (499)
Q Consensus 124 ~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 203 (499)
.+.+.+.++..+++.++.....|. +.++++.. .+
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~~~-----------------------~~---------------------- 210 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKE-RSVEVTEQ-----------------------EK---------------------- 210 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeee-cccccccc-----------------------cc----------------------
Confidence 877777666666666555544333 00000000 00
Q ss_pred cccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHh-hhcccccCeeecC
Q 010840 204 DDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAY-TMNTHMGKLKLPV 282 (499)
Q Consensus 204 ~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~-~m~~~i~g~~ip~ 282 (499)
+.++.+.. .+.++-..+..+++...+.+....-..+....... .+..+ +. .
T Consensus 211 -~~~~~~~~----------------------~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~----~~-~ 262 (428)
T PF13347_consen 211 -KISLRDSL----------------------RSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE----GL-I 262 (428)
T ss_pred -ccccccch----------------------hhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc----hh-h
Confidence 00000000 00111111222334444444444444444444443 23222 11 1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840 283 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 362 (499)
Q Consensus 283 ~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~ 362 (499)
+.+.....+..++..|+..+ +.+|.+ ..+-+..|.++.+++++...+...
T Consensus 263 ~~~~~~~~~~~~v~~~~~~~----l~~r~g-------k~~~~~~~~~~~~~~~~~~~~~~~------------------- 312 (428)
T PF13347_consen 263 SIFMLIFFVASIVGSPLWGR----LSKRFG-------KKKVYIIGLLLAALGFLLLFFLGP------------------- 312 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHcc-------ceeehhhhHHHHHHHHHHHHHHHh-------------------
Confidence 12233344445555555444 445532 233466788888888877766531
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCC
Q 010840 363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 435 (499)
Q Consensus 363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~ 435 (499)
.+.++++...++.+++-....+...++..+..+ ++..|++.|++.+..-+|..+++.+...+-...+
T Consensus 313 --~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G---- 386 (428)
T PF13347_consen 313 --GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG---- 386 (428)
T ss_pred --hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC----
Confidence 347888889999999999988888888888777 4567999999999999999998888776543321
Q ss_pred CCCCcccc--cCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840 436 GQPNWLAQ--NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 477 (499)
Q Consensus 436 ~~~~w~~~--~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~ 477 (499)
+-++ ..++..+...-.+.+.+.++..++-.++.++|+-
T Consensus 387 ----y~~~~~~q~~~~~~~i~~~~~~~p~~~~~~~~i~~~~y~l 426 (428)
T PF13347_consen 387 ----YDANAAVQSASALSGIRILFSIVPAIFLLLAIIFMRFYPL 426 (428)
T ss_pred ----cCCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1111 1222234445555556666656555667777763
No 72
>PRK09669 putative symporter YagG; Provisional
Probab=98.76 E-value=9.1e-06 Score=85.88 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-------DAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-------~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.++++...++.++++....+...+++.+.++ ++..|...|++.+...+|..+|+.+...+-
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll 386 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWIL 386 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666788999999999999999998886 456778889998888888877777776554
No 73
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.70 E-value=5.3e-06 Score=88.65 Aligned_cols=81 Identities=16% Similarity=0.122 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh---------ccch
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---------EHGW 123 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~---------~~g~ 123 (499)
..++++-.+.++|.+..-+ ....+.+.++++. |..+..+++...|+|+.+++.+.+.+.. ..||
T Consensus 125 ~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW 197 (476)
T PLN00028 125 TGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKI------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW 197 (476)
T ss_pred HHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhh------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Confidence 3455555667777776533 4456777776422 5677888887788888888766655422 2589
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010840 124 GSAFGALAIAMGISNML 140 (499)
Q Consensus 124 ~~~F~i~~~~m~l~~i~ 140 (499)
++.|.+.++..++..+.
T Consensus 198 r~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 198 RIAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999887766655443
No 74
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.70 E-value=1.4e-05 Score=84.25 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHH-HhhccchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-IQMEHGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~-i~~~~g~~~~F~i~ 130 (499)
...+++...+.+++.|..-+.....+.|.+++++ |..++.+++.+.++|+.+++.+.+. +.+..+|+..|.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3456667778889999888888889999887543 5789999999999999998877665 54457999999987
Q ss_pred HHHHHHHHH
Q 010840 131 AIAMGISNM 139 (499)
Q Consensus 131 ~~~m~l~~i 139 (499)
++..++..+
T Consensus 192 ~~~~~i~~~ 200 (438)
T TIGR00712 192 AICAIIVAL 200 (438)
T ss_pred HHHHHHHHH
Confidence 777666544
No 75
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.69 E-value=2.2e-05 Score=81.00 Aligned_cols=82 Identities=15% Similarity=0.158 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+...+.++-.+.++|.|.. ++..+..++.++++ +|.+..+++..+.++|..+++.+++++.++.||+..|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 3456777778888888864 44445557777632 2688999999999999999999999999899999999885
Q ss_pred HHHHHHHHH
Q 010840 131 AIAMGISNM 139 (499)
Q Consensus 131 ~~~m~l~~i 139 (499)
++.-++..+
T Consensus 151 ~~l~~~~~~ 159 (368)
T TIGR00903 151 AAVAAAGII 159 (368)
T ss_pred HHHHHHHHH
Confidence 555444433
No 76
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.64 E-value=2e-05 Score=83.87 Aligned_cols=81 Identities=19% Similarity=0.138 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc---chHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAF 127 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~---g~~~~F 127 (499)
+.+.+++.-.+.++|.|..-|...+.+.|.+++++ |.....++-.+.++|..+++.+..++.+.. +|+..|
T Consensus 121 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f 194 (467)
T PRK09556 121 SLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMF 194 (467)
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHH
Confidence 45567777778899999888999999999998643 567888888999999999998887765543 588888
Q ss_pred HHHHHHHHHH
Q 010840 128 GALAIAMGIS 137 (499)
Q Consensus 128 ~i~~~~m~l~ 137 (499)
.+.++..++.
T Consensus 195 ~~~g~~~~~~ 204 (467)
T PRK09556 195 IFPSIIALII 204 (467)
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 77
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.63 E-value=5.8e-05 Score=79.44 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccch
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGW 123 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~ 123 (499)
...+.+.-.+.++|.|+.-|...++++|.+++++ |..+..+.+.+.+.|.++++.+...+. +.+||
T Consensus 124 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 197 (432)
T PRK10406 124 PALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence 3456677788999999999999999999987533 466788888999999998887765554 25899
Q ss_pred HHHHHHHHHHHHH
Q 010840 124 GSAFGALAIAMGI 136 (499)
Q Consensus 124 ~~~F~i~~~~m~l 136 (499)
+..|.+.++..++
T Consensus 198 r~~F~i~~~~~ll 210 (432)
T PRK10406 198 RIPFALGAVLAVV 210 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 9999876664443
No 78
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.62 E-value=4.7e-05 Score=81.86 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-----------
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------- 119 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~----------- 119 (499)
+...++++..+.++|.|+.-|....++.+.++.+. |.+..++++.+.++|.++++.+..++..
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 35678889999999999999999999999998543 6788899999999999998877765421
Q ss_pred ------------ccchHHHHHHHHHHHHHHHH
Q 010840 120 ------------EHGWGSAFGALAIAMGISNM 139 (499)
Q Consensus 120 ------------~~g~~~~F~i~~~~m~l~~i 139 (499)
+.+|++.|.+.++..++.++
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999777665554443
No 79
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.62 E-value=5e-06 Score=88.12 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.++..++.++..+++.. ....+.+.=.+-+++.|..-|++..+.+.-.+
T Consensus 105 v~~~~~~~sa~~t~l~P~aa~~--------------------------~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P 158 (466)
T KOG2532|consen 105 VFFISGLISALLTLLTPLAASI--------------------------GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAP 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------------------cchhhHHHHHHhHHHHhHHHhhhhceeeeECC
Confidence 4566777777777777777651 22355666788899999999999999988877
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLF 141 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~~~~m~l~~i~f 141 (499)
. +| |..+....|-+..+|.+++.-++|++-+. .||...|.+.++.-++-.+++
T Consensus 159 ~---~E---rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w 212 (466)
T KOG2532|consen 159 P---NE---RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILW 212 (466)
T ss_pred H---HH---HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 4 33 68899999999999999999899999888 999999988666555444433
No 80
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.62 E-value=0.0001 Score=76.78 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHH-HHHHHHHHHHhhccchHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA 129 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~~~~~i~~~~g~~~~F~i 129 (499)
..+++...+.++|.+..-+...+...+.+++++ |.+...++..+.++|. .+++.+.+++.+..||...+..
T Consensus 106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 344555556677777766666777777766422 6788899999999996 6789988888888886544443
No 81
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.61 E-value=2e-05 Score=81.80 Aligned_cols=76 Identities=8% Similarity=-0.145 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 010840 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (499)
Q Consensus 55 ~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m 134 (499)
+.++..+.+++.+...|...++..|.-+ + +...|.+.....|+|..+++.+++.+.+ .+|+..|.+.++..
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~----~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~ 172 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSR----N----SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFA 172 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhh----h----cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHH
Confidence 3444556677777777877776654311 1 2346778888899999999999998864 69999998877766
Q ss_pred HHHHH
Q 010840 135 GISNM 139 (499)
Q Consensus 135 ~l~~i 139 (499)
++..+
T Consensus 173 ~~~~~ 177 (396)
T TIGR00882 173 LILML 177 (396)
T ss_pred HHHHH
Confidence 65544
No 82
>PRK11462 putative transporter; Provisional
Probab=98.59 E-value=4.9e-05 Score=80.89 Aligned_cols=86 Identities=9% Similarity=0.117 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-------cch
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGW 123 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-------~g~ 123 (499)
+...+++...+..++.-.+.-...++.++..+| ++| |.+..+|...+.++|.++++.+...+.+. .||
T Consensus 108 ~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~ 182 (460)
T PRK11462 108 KMIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGF 182 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhH
Confidence 344455555567788888888899999988776 433 57888999999999988876665433222 356
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010840 124 GSAFGALAIAMGISNMLF 141 (499)
Q Consensus 124 ~~~F~i~~~~m~l~~i~f 141 (499)
.....+.++..+++..+.
T Consensus 183 ~~~~~i~~ii~~i~~~i~ 200 (460)
T PRK11462 183 QGGIAVLSVVAFMMLAFC 200 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555555544444433
No 83
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.58 E-value=6.2e-05 Score=77.35 Aligned_cols=87 Identities=14% Similarity=0.282 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.+.++=.+.++..|.+-+-..+..+|..++++ |.++...-+.+..++..+|.=++.++.|..||+..|.+-
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 45678888889999999999999999999998654 688999999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHh
Q 010840 131 AIAMGISNMLFFI 143 (499)
Q Consensus 131 ~~~m~l~~i~f~~ 143 (499)
++.-+++++....
T Consensus 174 a~l~ll~~~~~~~ 186 (394)
T COG2814 174 AVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 6666655554443
No 84
>PRK09952 shikimate transporter; Provisional
Probab=98.58 E-value=7.9e-05 Score=78.68 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh--------hccchHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 125 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~--------~~~g~~~ 125 (499)
.+.+.-.+.++|.|+.-|...++..|.++++. |....+....+.++|.+++..+..++. +++||+.
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 45566678999999999999999998887532 456667778888888888877666554 3579999
Q ss_pred HHHHHHHHHH
Q 010840 126 AFGALAIAMG 135 (499)
Q Consensus 126 ~F~i~~~~m~ 135 (499)
.|.+.++..+
T Consensus 201 ~f~~~~~~~l 210 (438)
T PRK09952 201 PFLFSIVLVL 210 (438)
T ss_pred HHHHHHHHHH
Confidence 9988766543
No 85
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.57 E-value=2.5e-07 Score=95.01 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHH
Q 010840 50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFG 128 (499)
Q Consensus 50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~ 128 (499)
...+.+.+.=.+.++|-+.+-|..+++++|.|+++. |.+.|.||||++++|+.+|..+++++.+..+ |+++|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 355667777789999999999999999999998754 7999999999999999999999999988777 999999
Q ss_pred HHHHHHHHHHHHH
Q 010840 129 ALAIAMGISNMLF 141 (499)
Q Consensus 129 i~~~~m~l~~i~f 141 (499)
..++.+++..+..
T Consensus 193 ~~avl~vi~~~L~ 205 (493)
T KOG1330|consen 193 GSAVLGVIVGLLV 205 (493)
T ss_pred eehHHHHHHHHHH
Confidence 8887777665533
No 86
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.55 E-value=5.8e-05 Score=78.15 Aligned_cols=56 Identities=13% Similarity=0.047 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 372 IQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 372 ~~~~l~~igE~~~~p~~~ef~~~~aP~-~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
...++.+++.-+..+.......+.+++ +.++..+++.....++|..+++.+...+.
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666777777777777776 89999999988888899888888876654
No 87
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.53 E-value=0.00021 Score=73.21 Aligned_cols=301 Identities=12% Similarity=0.095 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (499)
Q Consensus 4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~ 83 (499)
|+.|..+.+.|..+.......-... ...-..+.........++..++++|.+.-..+..++.+|.-+|
T Consensus 53 I~~G~~~~~~g~~~ap~a~~~l~~~------------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e 120 (403)
T PF03209_consen 53 IWGGTLLQAGGLAIAPFALLLLAES------------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE 120 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccc------------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH
Confidence 5677888888877776665421110 0000222334555666777788888888899999999999886
Q ss_pred CChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHH----HHHHHHHHHHHHHHHhccccccccCCCCChHH
Q 010840 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF----GALAIAMGISNMLFFIGTPLYRHRLPGGSPLT 159 (499)
Q Consensus 84 ~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F----~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~ 159 (499)
++ |.+.-.+-|...=+|..++.++.+.+-+.++..-.. ..+.+.+.+.++..+--.++..+..+
T Consensus 121 ~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~------ 188 (403)
T PF03209_consen 121 ER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAA------ 188 (403)
T ss_pred hh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc------
Confidence 44 577888888888899999998888776666543222 22333333333322211111110000
Q ss_pred HHHHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHH
Q 010840 160 RVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKT 239 (499)
Q Consensus 160 ~~~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~ 239 (499)
.++ .++..+.+. |+... . -.+.++
T Consensus 189 ----------------~~~------------------------~~~~~f~~a--------------~~~~~-~-~~~a~~ 212 (403)
T PF03209_consen 189 ----------------AAE------------------------RPRPPFREA--------------WRQVW-A-SPQARR 212 (403)
T ss_pred ----------------CCC------------------------CCCccHHHH--------------HHHHH-h-CCChhH
Confidence 000 000011111 11000 0 012222
Q ss_pred hhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccC--eeecCCcccchhH---HHHHHHHHHHHHHHHHHhhhhcCC
Q 010840 240 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGK--LKLPVTCMPVFPG---LSIFLILSLYYSTFVPLCRRITGH 314 (499)
Q Consensus 240 ~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g--~~ip~~~l~~~n~---i~iiil~pl~~~i~~p~~~r~~~~ 314 (499)
++.. +++...-| ..|..-++ ..|| |++|+..-.-+|. .-.++...+..++..| |
T Consensus 213 f~~f--l~l~t~a~-----------~~QD~iLE-Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~---- 271 (403)
T PF03209_consen 213 FFVF--LFLGTLAF-----------FMQDVILE-PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---R---- 271 (403)
T ss_pred HHHH--HHHHHHHH-----------HhhHHHcC-CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---C----
Confidence 2211 11111111 11211222 2333 5666653333343 3344444444443321 2
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010840 315 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE 394 (499)
Q Consensus 315 ~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~ 394 (499)
..+.+--.+|....++++....+... . -+.+-+.+..+++|+|--+..++.+...-+
T Consensus 272 ---~~~~~~a~~G~~~~~~~f~lii~a~~------------------~--~~~~~~~~~~~l~G~g~G~f~vgals~mM~ 328 (403)
T PF03209_consen 272 ---LGKKRTAALGCLLGALAFALIILAGP------------------L--GSPWLFRPGVFLLGLGNGLFTVGALSLMMD 328 (403)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHh------------------c--ccchHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 22333344677777777665444321 0 235667788999999999999999999999
Q ss_pred hcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840 395 EAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 428 (499)
Q Consensus 395 ~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~ 428 (499)
.++++..|+.+|+|...++++..++.++.+...+
T Consensus 329 lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 329 LTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887777777766544
No 88
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.53 E-value=4.5e-05 Score=77.79 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc--chHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGAL 130 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~--g~~~~F~i~ 130 (499)
+.++++..+.++|.|...+...+...|.+++ + |.+..+++..+.++|..+++.+.+++.+.. +|+..|.+.
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~ 160 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-R------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCcc-h------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4566777788888888888888877776642 1 467889999999999999999988887654 388888766
Q ss_pred HHHHHHH
Q 010840 131 AIAMGIS 137 (499)
Q Consensus 131 ~~~m~l~ 137 (499)
++..++.
T Consensus 161 ~~~~~~~ 167 (355)
T TIGR00896 161 ALPALLA 167 (355)
T ss_pred HHHHHHH
Confidence 6544443
No 89
>PRK15075 citrate-proton symporter; Provisional
Probab=98.52 E-value=6.4e-05 Score=79.19 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH--------hhccchHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGS 125 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i--------~~~~g~~~ 125 (499)
.+.++-.+.++|.|+.-|+..++..|.+++++ |.....++....++|..+++.+++.+ .++.||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 45667778899999999999999999997543 56777888777888877777766655 24689999
Q ss_pred HHHHHHH
Q 010840 126 AFGALAI 132 (499)
Q Consensus 126 ~F~i~~~ 132 (499)
.|.+..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987543
No 90
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.51 E-value=9e-05 Score=77.59 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh------ccchHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGS 125 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~------~~g~~~ 125 (499)
...++++-.+.++|.|+.-|....+..+.++++ + |.....++..+.++|..+++.+++++.+ ..||++
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~---rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~ 169 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAY---F---RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQW 169 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhH
Confidence 346677778899999999888888888888732 1 5678889999999999999999988753 369999
Q ss_pred HHHHHHHHHHHHHH
Q 010840 126 AFGALAIAMGISNM 139 (499)
Q Consensus 126 ~F~i~~~~m~l~~i 139 (499)
.|.+.++..++..+
T Consensus 170 ~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 170 LFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987666554433
No 91
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.49 E-value=5.9e-05 Score=79.04 Aligned_cols=107 Identities=10% Similarity=0.059 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.++..+|.++...++. ..+.+.+.++..+.++|.|...+..++++.+..+
T Consensus 70 ~~~~g~~l~~~g~~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~ 124 (410)
T TIGR00885 70 GILLGLFLYALGAFLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGP 124 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence 566777777777766544322 1245678888999999999999999999888765
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh--------------------------ccchHHHHHHHHHHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGI 136 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~--------------------------~~g~~~~F~i~~~~m~l 136 (499)
+++ +.+..++.....++|+.+++.+.+.+.. ..+|+..|.+.++..++
T Consensus 125 ~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~ 198 (410)
T TIGR00885 125 EST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA 198 (410)
T ss_pred HhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 3456788888899999999999887632 24699999876665554
Q ss_pred HHHH
Q 010840 137 SNML 140 (499)
Q Consensus 137 ~~i~ 140 (499)
..+.
T Consensus 199 ~~~~ 202 (410)
T TIGR00885 199 VALL 202 (410)
T ss_pred HHHH
Confidence 4333
No 92
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2.1e-05 Score=80.34 Aligned_cols=90 Identities=14% Similarity=0.278 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHH--HHHhhccchHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFG 128 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~--~~i~~~~g~~~~F~ 128 (499)
+.+++.+-+.+-+.-+|.=-|...-.++.-|..++ |.+..+.+-.+-|+|+.+.+.++ +++..+++|+.+|.
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 45666667777888888878888888988887543 67889999999999999999998 99988899999999
Q ss_pred HHHHH-HHHHHHHHHhccc
Q 010840 129 ALAIA-MGISNMLFFIGTP 146 (499)
Q Consensus 129 i~~~~-m~l~~i~f~~g~~ 146 (499)
+|++. ++++++.+..+|.
T Consensus 190 ~pgiiaiival~~~~~~rd 208 (448)
T COG2271 190 FPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 98876 4566666665544
No 93
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.39 E-value=0.00017 Score=72.59 Aligned_cols=87 Identities=10% Similarity=0.064 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc--------
Q 010840 49 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------- 120 (499)
Q Consensus 49 ~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-------- 120 (499)
..+.+.+.+++.+++.|.+...+..++++++.-++++ +.+..|+--.+..+|++++|++.+.+-.+
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 3578899999999999999999999999999987543 45678888888899999999999876521
Q ss_pred --------cchHHHHHHHHHHHHHHHHHH
Q 010840 121 --------HGWGSAFGALAIAMGISNMLF 141 (499)
Q Consensus 121 --------~g~~~~F~i~~~~m~l~~i~f 141 (499)
..|++.|++.++..++..+++
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889885555444444433
No 94
>PRK10133 L-fucose transporter; Provisional
Probab=98.28 E-value=0.00055 Score=72.35 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++..++.+|.++...++.. .+...+.++..+.++|.|...+..++++.|..+
T Consensus 93 ~l~~g~~~~~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~ 147 (438)
T PRK10133 93 GIITGLFLYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC
Confidence 5667778888888765433321 134678889999999999999999999987543
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 118 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~ 118 (499)
+ + + +....+.+.....+|..+|+.+++.+.
T Consensus 148 ~-~--~---~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 148 E-S--S---GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred h-h--h---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2 1 233466777777899999988876543
No 95
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.27 E-value=0.00038 Score=73.14 Aligned_cols=63 Identities=10% Similarity=0.209 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q 010840 50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 117 (499)
Q Consensus 50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i 117 (499)
.+....++-..+..++.-.+.-.-.++.+...++ ++| |.+..+|..++.|+|.++...+.+.+
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~E---R~~l~s~R~~~~~~g~~l~~~~~~pl 172 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQE---RASLTSWRMVFASLGGLLVAVLFPPL 172 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666778888888888889999988775 554 68899999999999988776666544
No 96
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.21 E-value=3.3e-05 Score=81.56 Aligned_cols=85 Identities=14% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~ 133 (499)
...+.+.+..+|.....-..-++..+.-++++.. +.+.-++.|.+.++|++++..+.|++.++.+++..|.++++.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence 4455677889999998888888888877554422 456678889999999999999999999999999999888776
Q ss_pred HHHHHHHHH
Q 010840 134 MGISNMLFF 142 (499)
Q Consensus 134 m~l~~i~f~ 142 (499)
..+.++..+
T Consensus 164 ~~l~~~~~~ 172 (433)
T PF03092_consen 164 PLLMLIVAL 172 (433)
T ss_pred HHHHHHHHH
Confidence 666655333
No 97
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.05 E-value=0.0031 Score=67.86 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 446 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln 446 (499)
.+-++..-++.|+..-...........+..+...=+-..|+..+..+++..+|+.+...+...++
T Consensus 388 ~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--------------- 452 (509)
T KOG2504|consen 388 YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--------------- 452 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------
Confidence 44556667888888888888888888889998888899999999999999999999876553331
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 447 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 447 ~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
.++..|...+...+++.+++++....++++
T Consensus 453 --~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~ 482 (509)
T KOG2504|consen 453 --NYDHAFYFCGLCFLLSAVLLLILRECLKRR 482 (509)
T ss_pred --CeeeehhhcChHHHHHHHHHHHhHHHHHhc
Confidence 123455556666666666665555344443
No 98
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.05 E-value=0.0003 Score=71.61 Aligned_cols=77 Identities=16% Similarity=0.059 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh----------cc
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EH 121 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~----------~~ 121 (499)
.+.++++-.+.+++.+.+ +...++++|.+++++ |....+++..+.|+|..+++.+.+.+.+ +.
T Consensus 91 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~ 163 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL 163 (366)
T ss_pred HHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 345666777788886665 446778888886432 5678888888888998888877766543 24
Q ss_pred chHHHH-HHHHHHHH
Q 010840 122 GWGSAF-GALAIAMG 135 (499)
Q Consensus 122 g~~~~F-~i~~~~m~ 135 (499)
+|++.| .+.++..+
T Consensus 164 ~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 164 AWGWAFVIVPAGILL 178 (366)
T ss_pred cccchhHHHHHHHHH
Confidence 899988 44344333
No 99
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=97.96 E-value=0.034 Score=59.47 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcccc
Q 010840 374 YCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 430 (499)
Q Consensus 374 ~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t 430 (499)
-++.|+.---..+..=+++.++.|++..+.+.|+|.++.-.++.+|+++.+++...+
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t 443 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT 443 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777778888999999999999999999999999999999999999887655
No 100
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0061 Score=65.18 Aligned_cols=83 Identities=14% Similarity=0.185 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh------hccchH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------MEHGWG 124 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~------~~~g~~ 124 (499)
+.+.+.+--.+.++-.+..-|+....++.-|++++ +..-+.+||-+.++|..+|.++...+. ...||+
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~ 206 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWR 206 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCce
Confidence 44556666678999999999999999999998643 567789999999999999999988863 357999
Q ss_pred HHHHHHHHHHHHHHH
Q 010840 125 SAFGALAIAMGISNM 139 (499)
Q Consensus 125 ~~F~i~~~~m~l~~i 139 (499)
+.|+|.++.+++..+
T Consensus 207 ~~FiI~G~i~~~~gi 221 (495)
T KOG2533|consen 207 WLFIIEGVITLVLGI 221 (495)
T ss_pred eehhHHHHHHHHHHh
Confidence 999999887776554
No 101
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=97.92 E-value=0.014 Score=61.02 Aligned_cols=92 Identities=14% Similarity=0.234 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHH-HhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccch
Q 010840 371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAAL-AGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGR 449 (499)
Q Consensus 371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l-~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~ 449 (499)
+...+++|+.-.+..+++..++.+.+|++.|+.+||++.. ..|+|..+|+.+.+.+.+.-+ .+.. -.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g------~~~~------~~ 372 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG------ARGM------FD 372 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc------chhh------hh
Confidence 3334689999999999999999999999999999999876 457888887777665442110 0000 01
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840 450 FDYLYWLLAVLSVINFCAFLYSAYR 474 (499)
Q Consensus 450 l~~~f~~la~l~~~~~~~~~~~~~~ 474 (499)
...+|.+.+++.++..+++++..|+
T Consensus 373 ~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 373 WSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1235666777777777777776543
No 102
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.89 E-value=0.00088 Score=74.16 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc---------
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--------- 121 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~--------- 121 (499)
....++++-.+.++|.|..-+...+++.|.+++++ +..++.+++.+.++|..+|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 35567789999999999999999999999887543 578899999999999999999999886543
Q ss_pred -------------chHHHHHHHHHHHHHHHHHHH
Q 010840 122 -------------GWGSAFGALAIAMGISNMLFF 142 (499)
Q Consensus 122 -------------g~~~~F~i~~~~m~l~~i~f~ 142 (499)
+|+.+|.+.++..++..+.++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~ 278 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFF 278 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999888877666555443
No 103
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.0015 Score=66.58 Aligned_cols=87 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
..+.++++=.+=++|.+....+-.++++|.|+++.+ |.+...+---.+.+|.++||-.+|.+.|..|+..-|+++
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL 232 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL 232 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence 456889999999999999999999999999998653 578888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 010840 131 AIAMGISNMLFF 142 (499)
Q Consensus 131 ~~~m~l~~i~f~ 142 (499)
++++++..+.-+
T Consensus 233 ~~v~Lld~~L~l 244 (464)
T KOG3764|consen 233 AIVLLLDGALQL 244 (464)
T ss_pred HHHHHHHHHHHH
Confidence 998887776443
No 104
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.89 E-value=0.00042 Score=71.34 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=80.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.++..+...+..|+...+ .+|. ...+-+.++.++.+++.+..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~G~l----~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------- 97 (405)
T TIGR00891 51 SLISAALISRWFGALMFGLW----GDRY-------GRRLPMVTSIVLFSAGTLACGFA---------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------ccHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 44555555666666665554 3443 22233556666666665554432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 98 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~ 160 (405)
T TIGR00891 98 -PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV 160 (405)
T ss_pred -ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666778899999999999999999999999999999999999999999999998876644
No 105
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=97.88 E-value=0.0035 Score=65.16 Aligned_cols=89 Identities=10% Similarity=0.148 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHH-HHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYA-ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~-~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
.+++|+++.-.++++---+.-....-++.+..|+++.++...+. .++.++|..+-+.+.+..++
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd--------------- 374 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD--------------- 374 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh---------------
Confidence 45788888889999998899999999999999999998888775 57778888876666655432
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
++ .....|++++.+.++..++=.+.
T Consensus 375 ~~---G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 375 RI---GFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc---CcHHHHHHHHHHHHHHHHHheee
Confidence 11 11236777777766555544333
No 106
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.87 E-value=0.0004 Score=69.87 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=93.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+..++ .+| .++.+-+.+|.++.+++.+...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~g~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~---------------------- 82 (352)
T PF07690_consen 36 LLFSAFFLGSALFSPFAGYL----SDR-------FGRRRVLIIGLLLFALGSLLLAFA---------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHH-------S-HHHHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHH-------cCCeeeEeehhhhhhhHHHHhhhh----------------------
Confidence 34444555555666665544 344 233345777888888774444432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
.+.++++...++.|+++....+.....+.+..|++.|+..+|+.....++|..+++.+...+... .+|
T Consensus 83 -~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~--------~~~--- 150 (352)
T PF07690_consen 83 -SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY--------FGW--- 150 (352)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--------CHH---
T ss_pred -hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc--------ccc---
Confidence 12447788899999999999999999999999999999999999999999999999998765411 112
Q ss_pred cCccchhHHHHHHHHHHHHHHHHH
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCA 467 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~ 467 (499)
...|++.++++++..++
T Consensus 151 -------~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 -------RWAFLISAILSLIAAIL 167 (352)
T ss_dssp -------CCHHHHHHHHHHHHHHH
T ss_pred -------ccccccccchhhhhhhh
Confidence 22566677777766664
No 107
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.83 E-value=1.4e-05 Score=82.36 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=104.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
.+|..-.+.-+++.|++..+ ..| .+..+-|++|.++-+++++..++.
T Consensus 72 ll~~vf~v~~~i~sPl~gyL----adr-------yNR~~v~~vG~~iW~~Av~~~~fs---------------------- 118 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYL----ADR-------YNRKRVIAVGIFIWTLAVFASGFS---------------------- 118 (493)
T ss_pred chhHHHHHHHHHHHHHHHHH----Hhh-------cCcceEEeeHHHHHHHHHHHHHHH----------------------
Confidence 44544455555677777664 233 345566899999988887776654
Q ss_pred cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccc
Q 010840 364 DLSAYWLL-IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA 442 (499)
Q Consensus 364 ~~s~~wli-~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~ 442 (499)
+-+||+ ..=.+.|+||..++|....++.+..|+..||.++|++++..-+|+.+|.+..+.+...+. .|
T Consensus 119 --~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-------~W-- 187 (493)
T KOG1330|consen 119 --NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-------WW-- 187 (493)
T ss_pred --HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-------ce--
Confidence 245654 567899999999999999999999999999999999999999999999988877664431 25
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 443 QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 443 ~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
-+=|++-++++++.+++..++.+-=+
T Consensus 188 --------r~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 188 --------RWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred --------EEEEEeehHHHHHHHHHHHhhccCcc
Confidence 22466778888887776666654433
No 108
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.83 E-value=0.00083 Score=70.31 Aligned_cols=82 Identities=18% Similarity=0.085 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 402 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~ 402 (499)
-+.+++++.+++.+..++. .+.++++...++.|++|....|.....+.+..|++.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg 131 (412)
T TIGR02332 75 WIAGIMVLWGIASTATMFA-----------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA 131 (412)
T ss_pred HHHHHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH
Confidence 3667777777777666543 34677788899999999999999999999999999999
Q ss_pred HHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 403 IGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 403 ~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
..+|++....++|..+++.+...+.
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~l~ 156 (412)
T TIGR02332 132 RANALFMIAMPVTMALGLILSGYIL 156 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988876543
No 109
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=97.80 E-value=0.0007 Score=69.29 Aligned_cols=110 Identities=15% Similarity=-0.018 Sum_probs=79.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..+ +.+|. +..+-+.+|.++.+++.+..+..
T Consensus 44 ~~~~~~~~~~~~~~~~~g~----l~d~~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------- 90 (385)
T TIGR00710 44 MTLTLYLLGFAAGQLLWGP----LSDRY-------GRRPVLLLGLFIFALSSLGLALS---------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHhhhh----HHHhc-------CChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3444444445555555443 34442 23334667777777776665443
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.++++....+....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 153 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL 153 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667778899999999999999999999999999999999999999999988888876543
No 110
>PRK03545 putative arabinose transporter; Provisional
Probab=97.80 E-value=0.00083 Score=69.50 Aligned_cols=87 Identities=16% Similarity=0.044 Sum_probs=70.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
.+..+-+.++.++.+++.+..+.. .+.++++...++.|+++....|.....+.+..|
T Consensus 71 ~g~r~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~ 127 (390)
T PRK03545 71 VERRKLLIGLFVLFIASHVLSALA-----------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAP 127 (390)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455777888877777666543 346677777889999999999999999999999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
++.|+..+|++....++|..+++.+...+.
T Consensus 128 ~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~ 157 (390)
T PRK03545 128 AGKKAQALSLLATGTALAMVLGLPLGRVIG 157 (390)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999988876643
No 111
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.80 E-value=0.0087 Score=65.17 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+...+..|..+.++|.|... .....++|..+.+. |...+.+..+..=+...+++.++..+..+.+|+|.|.+.
T Consensus 130 ~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 130 NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 34568889999999988765 44556788876422 222222222222222233455555555567999999999
Q ss_pred HHHHHHHHHHH
Q 010840 131 AIAMGISNMLF 141 (499)
Q Consensus 131 ~~~m~l~~i~f 141 (499)
++...++++..
T Consensus 203 ~i~~~i~~vl~ 213 (599)
T PF06609_consen 203 IIWSGIALVLI 213 (599)
T ss_pred HHHHHHHHHHH
Confidence 88877777643
No 112
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.026 Score=57.91 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
.|++|..+|++|..+..=.+. ......|..+|.+++.|.|..+...++++++.-+
T Consensus 80 gi~lgL~l~avg~~lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~ 134 (422)
T COG0738 80 GIVLGLLLYAVGAALFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGK 134 (422)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence 477888889988888764433 2356688999999999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 119 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~ 119 (499)
++...+ | .|.-=-..-+|++++|.+++++-.
T Consensus 135 ~~~a~~---r---lnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 135 PESAAF---R---LNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred chhHHH---H---HHHHHHhhhhHHHHHHHHHHHHHH
Confidence 754322 2 223233346999999999988754
No 113
>TIGR00893 2A0114 d-galactonate transporter.
Probab=97.78 E-value=0.00047 Score=70.13 Aligned_cols=136 Identities=15% Similarity=0.053 Sum_probs=93.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..++ .+|.+++ +-+.+|.++.+++.+..+..
T Consensus 33 ~~~~~~~~~~~~~~~~~g~l----~d~~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 79 (399)
T TIGR00893 33 YVFSAFSWGYVVGQFPGGWL----LDRFGAR-------KTLAVFIVIWGVFTGLQAFA---------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHhcCcc-------eeeHHHHHHHHHHHHHHHHH----------------------
Confidence 45555666666666665554 3443211 22456666666666555443
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
.+.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+...+... .+|
T Consensus 80 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~~~--- 147 (399)
T TIGR00893 80 -GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH--------FSW--- 147 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh--------CCc---
Confidence 34667777889999999999999999999999999999999999999999999998887754321 123
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
.+.|+..++++++..++....
T Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 148 -------QWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred -------hHHHHHHHHHHHHHHHHhhhe
Confidence 345666666666555544433
No 114
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=97.75 E-value=0.0017 Score=67.38 Aligned_cols=109 Identities=14% Similarity=0.009 Sum_probs=77.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..++..++ .+|.+ ..+-+.+|.++.+++.+..+..
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 100 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRL----ADRIG-------RKRILIVSVALFGLFSLATAQA---------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhC-------CchhHHHHHHHHHHHHHHHHHh----------------------
Confidence 34445555555555554443 44432 2233666666666655444332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.|++.....+.....+.+..|++.|+..+|++.....+|..+++.+....
T Consensus 101 -~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 162 (406)
T PRK11551 101 -WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA 162 (406)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777889999999999999999999999999999999999999999999988776543
No 115
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.73 E-value=0.0014 Score=66.25 Aligned_cols=115 Identities=9% Similarity=0.046 Sum_probs=81.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..++ .+|. +..+-+.++.++.+++.+..+..... ..
T Consensus 38 ~~~~~~~~~~~i~~~~~G~l----~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 89 (365)
T TIGR00900 38 LAALAGMLPYVVLSPIAGAL----ADRY-------DRKKVMIGADLIRAVLVAVLPFVALL-----------------GG 89 (365)
T ss_pred HHHHHHHHHHHHHHHhhhHH----HHhh-------chhHHHHHHHHHHHHHHHHHHHHHHc-----------------CC
Confidence 34555555566666665443 3442 22233556666666665555544320 00
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.+++..+..|....++.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 90 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 152 (365)
T TIGR00900 90 -LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY 152 (365)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788899999999999999999999999999999999999999999999988876653
No 116
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.0015 Score=67.20 Aligned_cols=138 Identities=16% Similarity=0.067 Sum_probs=108.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++-+.-.+.+.+..|++..+..++ +..+-+-..+++.++|-+..++.
T Consensus 52 ~lis~yAl~~ai~ap~l~~lt~r~-----------~Rr~lLl~~l~lFi~~n~l~alA---------------------- 98 (394)
T COG2814 52 QLITAYALGVALGAPLLALLTGRL-----------ERRRLLLGLLALFIVSNLLSALA---------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc-----------chHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 677888889999999877653332 22233445566777777777665
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
-|.+.++..=++.+++--...+.....+.+.+|++.|+..+|+-+....++..+|..+.+++...- +|
T Consensus 99 -p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~--------GW--- 166 (394)
T COG2814 99 -PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF--------GW--- 166 (394)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh--------hH---
Confidence 457788889999999999999999999999999999999999999999999999999888766432 36
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYSAY 473 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~~~ 473 (499)
-.-|+.++.++++.++..+...+
T Consensus 167 -------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 -------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 23678888888888877776666
No 117
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.68 E-value=0.0014 Score=67.70 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+.++++...++.+++..+..+.....+.+..|++.|+..+|++.....+|..+++.+...+
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l 150 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI 150 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677788999999999999999999999999999999999988888888888776654
No 118
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.62 E-value=0.0037 Score=64.96 Aligned_cols=108 Identities=13% Similarity=-0.018 Sum_probs=81.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840 286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365 (499)
Q Consensus 286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~ 365 (499)
.+...+...+..|+..+ +.+| ....+-+.++.++.+++.+..+.. .
T Consensus 61 ~~~~~~~~~~~~~~~g~----l~Dr-------~grr~~~~~~~~~~~~~~~~~~~~-----------------------~ 106 (394)
T PRK10213 61 VTVTAFVAMFASLFITQ----TIQA-------TDRRYVVILFAVLLTLSCLLVSFA-----------------------N 106 (394)
T ss_pred HHHHHHHHHHHHHHHHH----Hhcc-------cCcHHHHHHHHHHHHHHHHHHHHH-----------------------C
Confidence 34455555556565543 3444 233455678888877776665442 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+.++++..-++.|++.....|.....+.+..|++.|+..+|+.....++|..+++.+...+.
T Consensus 107 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~ 168 (394)
T PRK10213 107 SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG 168 (394)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778899999999999999999999999999999999999999999999998887654
No 119
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=97.61 E-value=0.0019 Score=68.54 Aligned_cols=110 Identities=14% Similarity=-0.011 Sum_probs=81.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+...+..++..|+..++ .+|. +..+-+.+|.++.+++.+..+..
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~~~~~~---------------------- 87 (485)
T TIGR00711 41 WVITSYMLANAISIPLTGWL----AKRF-------GTRRLFLISTFAFTLGSLLCGVA---------------------- 87 (485)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHHh-------CcHHHHHHHHHHHHHHHHHHhCc----------------------
Confidence 55556666666666766554 3332 22233566777666666554432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.|++.....|.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 88 -~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 88 -PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred -CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 346667778899999999999999999999999999999999999999999999988876643
No 120
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.60 E-value=0.0023 Score=67.35 Aligned_cols=109 Identities=13% Similarity=-0.004 Sum_probs=77.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840 285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 364 (499)
Q Consensus 285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~ 364 (499)
+.+...+...+..|+..+ +.+|. ++.+-+.+|+++.+++.+..+..
T Consensus 63 ~~~~~~~~~~~~~~~~G~----l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~----------------------- 108 (434)
T PRK11663 63 LATLFYITYGVSKFVSGI----VSDRS-------NARYFMGIGLIATGIINILFGFS----------------------- 108 (434)
T ss_pred HHHHHHHHHHHHHhhhhH----HHhhc-------CCchhHHHHHHHHHHHHHHHHHH-----------------------
Confidence 334444444555555444 34443 22233677777777776655443
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.+.++...++.++++.+..+.....+.+..|++.||..+|++....++|..+++.+...+.
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~ 171 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIA 171 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555556778899999889999999999999999999999999999999999988776654
No 121
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.59 E-value=0.0047 Score=63.90 Aligned_cols=108 Identities=10% Similarity=0.093 Sum_probs=72.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840 285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 364 (499)
Q Consensus 285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~ 364 (499)
+.++..+...+..|+..++ .+|.. ..+-+.+|.++.+++.+..+..
T Consensus 59 ~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~----------------------- 104 (408)
T PRK09874 59 VFSITFLFSAIASPFWGGL----ADRKG-------RKIMLLRSALGMGIVMVLMGLA----------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHH----hhhhC-------cHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 3444455555666665444 34421 2223556666666665554432
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.+++..+ .+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 105 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 166 (408)
T PRK09874 105 QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA 166 (408)
T ss_pred hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677778888888765 4677788889999999999999999988889888888876543
No 122
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.59 E-value=0.0038 Score=67.00 Aligned_cols=110 Identities=15% Similarity=0.133 Sum_probs=82.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
|..+...+...+..|+..++ .+|+ ...+-+.+|.++.+++.+..+..
T Consensus 45 ~~~~~~~l~~~~~~~~~G~l----~D~~-------Grk~~l~~~~~~~~~~~~~~~~a---------------------- 91 (495)
T PRK14995 45 WIIDIYSLVMAGMVLPMGAL----GDRI-------GFKRLLMLGGTLFGLASLAAAFS---------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------ccHHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 55555566666666666554 3442 23344677888777777766543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE-APDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~-aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...+++|+|.....|.....+.+. .|++.|+..+|++....++|..+|+.+...+.
T Consensus 92 -~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 92 -PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777788999999999999888877666 57899999999999999999999999987754
No 123
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.56 E-value=0.00045 Score=71.52 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
..++++..+.++|.+..-|.......|.++++ ++.+.+.+++...++|..+++.+.+++.+..||+..|.+.++
T Consensus 303 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 376 (399)
T PRK05122 303 WMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAAL 376 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34556677888888887787777777655432 267899999999999999999999999888999999998888
Q ss_pred HHHHHHHHHHhccccccccCC
Q 010840 133 AMGISNMLFFIGTPLYRHRLP 153 (499)
Q Consensus 133 ~m~l~~i~f~~g~~~~~~~~p 153 (499)
..+++++.....+++.+++.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 377 AALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHHhcccccccCC
Confidence 888877766555555444433
No 124
>TIGR00895 2A0115 benzoate transport.
Probab=97.54 E-value=0.00071 Score=69.25 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|.++.+++.+..+.. .+.++++...++.+++.....+.....+.+..|++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 139 (398)
T TIGR00895 83 RVLLWSILLFSVFTLLCALA-----------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhh
Confidence 33556666666666554432 2356667778999999999999999999999999999
Q ss_pred HHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 402 SIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+..+|++.....+|..+++.+...+.
T Consensus 140 ~~~~~~~~~~~~~g~~~~~~~~~~l~ 165 (398)
T TIGR00895 140 GTAVGLMFCGYPIGAAVGGFLAGWLI 165 (398)
T ss_pred chhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988876543
No 125
>PRK10054 putative transporter; Provisional
Probab=97.53 E-value=0.0039 Score=64.84 Aligned_cols=110 Identities=7% Similarity=0.003 Sum_probs=75.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.++..+..++..|+..++ .+|. ...+-+.+|.++.+++++..++.+
T Consensus 47 ~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~k~~~~~~~~~~~~~~~~~~~~~--------------------- 94 (395)
T PRK10054 47 YAMTIALTIGVVFSLGFGIL----ADKF-------DKKRYMLLAITAFASGFIAIPLVN--------------------- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHH----Hhhc-------CcchhHHHHHHHHHHHHHHHHHHh---------------------
Confidence 33444445555566665554 3332 222346677777777776655442
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+.+..+..+.+.+.+.....+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus 95 --~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 95 --NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445667777877788888999999999999999999999999999999988887654
No 126
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.51 E-value=0.0067 Score=51.72 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.++.....++.+++.-...+.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 5556667889999999999999999999999999999999999999999999988876643
No 127
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.51 E-value=0.0048 Score=63.72 Aligned_cols=110 Identities=11% Similarity=-0.050 Sum_probs=82.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+.+.+..++..|+..++ .+|. +..+-+.+|.++.+++.+..+..
T Consensus 42 ~~~s~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~l~~~~---------------------- 88 (382)
T PRK10091 42 HMISYYALGVVVGAPIIALF----SSRY-------SLKHILLFLVALCVIGNAMFTLS---------------------- 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccC-------ccHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 45556666666676665543 4442 33344677777777777665543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+...+.
T Consensus 89 -~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 151 (382)
T PRK10091 89 -SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS 151 (382)
T ss_pred -CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence 346777778899999999999999999999999999999999999888899988887766543
No 128
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.51 E-value=0.18 Score=53.51 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 116 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~ 116 (499)
+.+.+++.-.+.++| |..-+.....+.+.|++++ |..+..++-...|+|..++..+.+.
T Consensus 127 s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 127 PFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355677777778887 5566778888888887432 5677888877778888766655544
No 129
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.47 E-value=0.00069 Score=68.74 Aligned_cols=107 Identities=10% Similarity=-0.029 Sum_probs=76.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..++..++ .+|.+ ..+-+.+|.++.+++.+..+..
T Consensus 34 ~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 80 (379)
T TIGR00881 34 LLLSSFSIAYGISKFVMGSV----SDRSN-------PRVFLPIGLILCAIVNLFFGFS---------------------- 80 (379)
T ss_pred HHHHHHHHHHHhhhhhhhHH----HHhhC-------CeehhHHHHHHHHHHHHHHHHh----------------------
Confidence 34444455555555554443 44432 2234667777777777666544
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhh-hhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASI-LNS 424 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~-l~~ 424 (499)
.+.++++...++.+++..+..|.....+.+..|++.|+..+|++.....+|..+++. +..
T Consensus 81 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 81 -TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred -hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence 235666777889999999999999999999999999999999999999999999883 443
No 130
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.47 E-value=0.0033 Score=65.80 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|+++.+++.+..+.. .+.++++..-++.|+++.+..+.......+.-|++.+
T Consensus 82 ~~l~~~~~~~~~~~~~~~~a-----------------------~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
T PRK15403 82 PVLITGALIFTLACAATLFT-----------------------TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG 138 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHc-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34666777766666554432 3467777788999999988777777778888899999
Q ss_pred HHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHH
Q 010840 402 SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAF 468 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~ 468 (499)
+..+|++.....+|..+|+.+...+... .+| ...|+..++++++..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~--------~gw----------~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 139 IKLMAIITSIVLVAPIIGPLSGAALMHF--------VHW----------KVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCH----------HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887654321 134 235666666666555443
No 131
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.46 E-value=0.0011 Score=56.83 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~ 131 (499)
.+.+.+...+.+++.+...+...+...|.+++++ |.+...+++...++|..+++.+.+++.+..+|+..|.+.+
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHH
Confidence 3456667788889999888999999999887543 5788999999999999999999999988889999998877
Q ss_pred HHHHHHHHHHH
Q 010840 132 IAMGISNMLFF 142 (499)
Q Consensus 132 ~~m~l~~i~f~ 142 (499)
+..+++.+...
T Consensus 125 ~~~~~~~~~~~ 135 (141)
T TIGR00880 125 ILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHh
Confidence 77666655443
No 132
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.12 Score=52.55 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhcc-chHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 129 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~-g~~~~F~i 129 (499)
+...++.|-.+++.|.+....-+.+++-+-|+++ ....-..|-.+.++|+.+++.+++.+.++. ||+.+.+.
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 4678999999999999998888888887777643 356788899999999999999999988777 79998877
Q ss_pred HHHHHHHHHHHHH
Q 010840 130 LAIAMGISNMLFF 142 (499)
Q Consensus 130 ~~~~m~l~~i~f~ 142 (499)
=+..-++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
No 133
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.40 E-value=0.0063 Score=68.33 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=77.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..++..+ +..|.+ ..+-+.+++++.+++.++.++.
T Consensus 206 ~l~s~~~lG~iiG~li~G~----LsDR~G-------RR~~lii~lil~~i~~ll~afa---------------------- 252 (742)
T TIGR01299 206 MLGLIVYLGMMVGAFFWGG----LADKLG-------RKQCLLICLSVNGFFAFFSSFV---------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhC-------cHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 3444445555555555444 345432 2233556666666655554433
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.|++.....|....++.+..|++.||..++++....++|..+++.+...+
T Consensus 253 -~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~i 314 (742)
T TIGR01299 253 -QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAI 314 (742)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566777889999999999999999999999999999999999999999998888766443
No 134
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.39 E-value=0.013 Score=59.50 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
+.....+.++.-....+.....+.+..|.+.||..+|+.....+++..+|+++.+.
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence 44456788999999999999999999999999999999999999999999999854
No 135
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.38 E-value=0.007 Score=63.07 Aligned_cols=83 Identities=10% Similarity=0.077 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|.++.+++++..+.. .+.|+++...++.++++.+..|.....+.+.+|++.|
T Consensus 77 ~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 133 (400)
T PRK11646 77 PMIVTGMLMRAAGFATMAIA-----------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQR 133 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 33667778777777665433 3367777888999999999999999999999999999
Q ss_pred HHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 402 SIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+..+|+......+|..+|+.+...+.
T Consensus 134 ~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 134 GRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988877654
No 136
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.36 E-value=0.011 Score=61.87 Aligned_cols=113 Identities=9% Similarity=0.029 Sum_probs=84.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..++ .+|. ...+-+.+|+++.+++.+....... .
T Consensus 42 ~l~s~~~~g~~i~~~~~g~l----~~r~-------G~r~~~~~g~~l~~~g~~l~~~~~~-------------------~ 91 (410)
T TIGR00885 42 LVQSAFYGGYFIMAIPAAIF----MKKL-------SYKAGILLGLFLYALGAFLFWPAAE-------------------I 91 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------CchHHHHHHHHHHHHHHHHHHHHHh-------------------h
Confidence 45566666667777765554 4442 3334577888888888766433211 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.|+|--+..+....++.+.+|++.++..+++.....++|..+|+.+...+.
T Consensus 92 -~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 92 -MNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred -ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666777899999999999999999999999999999999999999999999988877653
No 137
>PRK03699 putative transporter; Provisional
Probab=97.36 E-value=0.011 Score=61.36 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=74.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840 286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365 (499)
Q Consensus 286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~ 365 (499)
.+...+...+..++..++. +|. +..+-+.++.++.+++.+..++. .
T Consensus 48 ~s~~~~~~~i~~~~~g~l~----dr~-------g~r~~~~~~~~~~~i~~~l~~~~-----------------------~ 93 (394)
T PRK03699 48 FTFLNAGILISIFLNAWLM----EII-------PLKRQLIFGFALMILAVAGLMFS-----------------------H 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHh-------hHHHHHHHHHHHHHHHHHHHHHc-----------------------c
Confidence 3444444555555544433 332 22234566776666666655432 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+.++++...++.++++....+.....+.+..|++.|+..+++.....++|..+++.+...+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l 154 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL 154 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677789999999999998999999999999999999998888888888888776543
No 138
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.35 E-value=0.0064 Score=64.53 Aligned_cols=118 Identities=12% Similarity=-0.012 Sum_probs=76.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840 286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365 (499)
Q Consensus 286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~ 365 (499)
.+...+...+..++..+ +.+|++ ..+-+.++.++.+++.+..+..+....... . +.. .
T Consensus 61 ~s~~~ig~~~~~~~~G~----l~dr~G-------rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~-------~---~~~-~ 118 (479)
T PRK10077 61 VASALIGCIIGGALGGY----CSNRFG-------RRDSLKIAAVLFFISALGSAWPEFGFTSIG-------P---DNT-G 118 (479)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHhc-------cHHHHHHHHHHHHHHHHHHHhhcccccccc-------c---cch-h
Confidence 33334445555555444 344432 223366677776666665554321100000 0 001 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
.+++++..-++.|++.....|....++.+..|++.||.++|++.....+|..++..+...
T Consensus 119 ~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~ 178 (479)
T PRK10077 119 YVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF 178 (479)
T ss_pred HHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244556677999999999999999999999999999999999999989998888766543
No 139
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0017 Score=66.11 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh-hH
Q 010840 324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM-KS 402 (499)
Q Consensus 324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m-r~ 402 (499)
|.+|++++..+-++.++.+ |.+.++.+=.++|+|..+....+++++.+.-|++. ||
T Consensus 139 m~~Gl~vmf~sTilFafg~-----------------------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~ 195 (464)
T KOG3764|consen 139 MVAGLFVMFLSTILFAFGN-----------------------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG 195 (464)
T ss_pred HHHHHHHHHHHHHHHHHcc-----------------------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence 7899999999988888763 34567788999999999999999999999999976 69
Q ss_pred HHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010840 403 IGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479 (499)
Q Consensus 403 ~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 479 (499)
..||.-.-..++|..+|+.++++++..-+ + .-=|.+++.++++...+-+++.+.++..+
T Consensus 196 ~vmGialgfislG~lvgPpfGGilYe~~G--k----------------~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 196 SVMGIALGFISLGVLVGPPFGGILYEFAG--K----------------SAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred HHHHHHHHHHhccceecCCcccchHhhcC--C----------------cCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 99999999999999999999988775332 1 11378899999999988888777766554
No 140
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.33 E-value=0.0028 Score=66.41 Aligned_cols=109 Identities=18% Similarity=0.125 Sum_probs=78.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+..++ .+|. .+.+-+.+|.++.+++.+..+.... .
T Consensus 75 ~~~~~~~~~~~i~~~~~g~l----~d~~-------grr~~~~~~~~~~~~~~~~~~~~~~-------------------~ 124 (481)
T TIGR00879 75 LVVSIFLVGGFIGALFAGWL----SDRF-------GRKKSLLIIALLFVIGAILMGLAAF-------------------A 124 (481)
T ss_pred HHHHHHHHHHHHHHHHhhHh----hhhh-------hhHHHHHHHHHHHHHHHHHHHHhcc-------------------c
Confidence 34444445555555555544 3432 2233366777777776666544321 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 423 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~ 423 (499)
.+.++++...++.|+|+....+....++.+..|++.|+..+|++.....+|..+++.+.
T Consensus 125 -~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 125 -LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred -cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33456777889999999999999999999999999999999999999999999999887
No 141
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.038 Score=58.70 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHH-H-HHhhccchHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-V-YIQMEHGWGSAFGA 129 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~-~-~i~~~~g~~~~F~i 129 (499)
.-++.+|=.+.++..|.......-++.+.-+ ++. |...=...=.++++|.+++..++ + .++.+-.|++.++.
T Consensus 116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP----~~~--RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~ 189 (485)
T KOG0569|consen 116 FEMLILGRLIVGLACGLSTGLVPMYLTEISP----KNL--RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAF 189 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcCh----hhh--ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHH
Confidence 3478888899999999988888888875544 332 44444455667889988885443 3 45666789999988
Q ss_pred HHHHHHHHHHHHHh
Q 010840 130 LAIAMGISNMLFFI 143 (499)
Q Consensus 130 ~~~~m~l~~i~f~~ 143 (499)
+.+..++.++...+
T Consensus 190 ~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 190 PLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHhc
Confidence 88877766665543
No 142
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.30 E-value=0.0017 Score=71.92 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=88.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH--hhhhh------------
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERY--RRNYA------------ 349 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~--r~~~~------------ 349 (499)
++.+.+.+.-.+..++...+ ..| ....+-+++|+++.+++.++.++.+.. +++..
T Consensus 72 ~i~s~~~i~~~~~~i~v~~~----~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~ 140 (633)
T TIGR00805 72 LINGSYEIGNLLLIIFVSYF----GTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSA 140 (633)
T ss_pred eeeehhhHHHHHHHHHHHHh----hcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccc
Confidence 45556666666666655442 333 233455889999999999888776532 11100
Q ss_pred hhcCCccc-------------ccCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHH
Q 010840 350 ISHGYEFS-------------FLTAMP-DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG 415 (499)
Q Consensus 350 ~~~g~~~~-------------~~~~~~-~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g 415 (499)
++.-+..+ ..+... +..+..++..-++.|+|+....+.+..++.+..|++.|+.++|++.....+|
T Consensus 141 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG 220 (633)
T TIGR00805 141 NSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFG 220 (633)
T ss_pred ccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhh
Confidence 00000000 000000 0224455667899999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhc
Q 010840 416 CFAASILNSIIK 427 (499)
Q Consensus 416 ~~l~~~l~~~v~ 427 (499)
..+|.++...+.
T Consensus 221 ~~lG~llgg~l~ 232 (633)
T TIGR00805 221 PAFGYLLGSFCL 232 (633)
T ss_pred hHHHHHHHHHHH
Confidence 999888877654
No 143
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.29 E-value=0.013 Score=60.80 Aligned_cols=60 Identities=15% Similarity=0.005 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.++++...++.|++..+..+.....+.+..|++.|+..+++......+|..+++.+...+
T Consensus 101 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l 160 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788999999998899999999999999999888888777777777777776554
No 144
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.28 E-value=0.013 Score=61.05 Aligned_cols=109 Identities=12% Similarity=0.079 Sum_probs=81.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+...+...+..|+..++ .+|. +..+-+.+|.++.+++.+..++.
T Consensus 57 ~~~~~~~~~~~l~~~~~g~l----~dr~-------g~r~~l~~~~~~~~~~~~~~~~~---------------------- 103 (426)
T PRK12307 57 FLATAAFIGRPFGGALFGLL----ADKF-------GRKPLMMWSIVAYSVGTGLSGLA---------------------- 103 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------CChHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 34455555555666655443 4443 23344667777777777665554
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 104 -~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 104 -SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred -hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 23566777889999999999999999999999999999999999999999999998776553
No 145
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.28 E-value=0.0028 Score=67.38 Aligned_cols=89 Identities=12% Similarity=0.006 Sum_probs=69.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
++.+-+.+++++.+++.+..+..-. ... .+.+.++...++.|++|-+..|.....+.+..|+
T Consensus 92 g~r~~l~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 153 (467)
T PRK09556 92 NTKQFLPFLLILSAICMLGFGASLG-----------------SGS-VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR 153 (467)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHh-----------------ccc-chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc
Confidence 3445577777777776655554311 011 3466777788999999999999999999999999
Q ss_pred hhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 399 AMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
+.||..+|++.....+|..+++.+...
T Consensus 154 ~~rg~a~gi~~~~~~lG~~l~~~i~~~ 180 (467)
T PRK09556 154 RKRGRFLGFWNISHNLGGAGAGGVALW 180 (467)
T ss_pred cceeeeEEeeecccchhhhHHHHHHHH
Confidence 999999999999999999999888654
No 146
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.26 E-value=0.0014 Score=68.98 Aligned_cols=119 Identities=13% Similarity=0.241 Sum_probs=83.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
++..+-|..|+.+.++=++..... .|+|..+|.-++.++.-..+..+..+++...||
T Consensus 433 iGHv~v~~lgLa~~~~Rf~~~S~L-----------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaP 489 (618)
T KOG3762|consen 433 IGHVNVMYLGLACNVGRFLYYSYL-----------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAP 489 (618)
T ss_pred hcccceeeehhhHHHHHHHHHHHh-----------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 345556778887777766666555 346777888899999999999999999999999
Q ss_pred chhhHHHHhHHHHHh-HHHHHHHhhhhhhhc-cccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010840 398 DAMKSIGSAYAALAG-GLGCFAASILNSIIK-SVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 475 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~-a~g~~l~~~l~~~v~-~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y 475 (499)
+++|..++|+.-... ++|.-+|++++..+. ++. .--+|+..++.+++.+++++.+-+..
T Consensus 490 p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-------------------~~ttf~~~giAcl~~l~~~~~iq~~l 550 (618)
T KOG3762|consen 490 PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-------------------ARTTFRIFGIACLVTLALFISIQLLL 550 (618)
T ss_pred CcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-------------------hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999876543 444444444443322 111 12367777777777777777666666
Q ss_pred ccc
Q 010840 476 KYR 478 (499)
Q Consensus 476 ~~~ 478 (499)
+++
T Consensus 551 ~~~ 553 (618)
T KOG3762|consen 551 KRR 553 (618)
T ss_pred ccc
Confidence 554
No 147
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.24 E-value=0.01 Score=60.04 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=86.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+...+...+..|+..++ .+|++++ +-+.+|.++.+++.+..++.
T Consensus 42 ~~~s~~~~~~~~~~~~~G~l----~d~~G~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 88 (377)
T TIGR00890 42 IWFTLLLIGLAMSMPVGGLL----ADKFGPR-------AVAMLGGILYGLGFTFYAIA---------------------- 88 (377)
T ss_pred HHHHHHHHHHHHHhhhhHHH----HHHcCcc-------chhHHhHHHHHHHHHHHHHH----------------------
Confidence 34445555555666665544 4443222 23567777777777666554
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
.+.+.++...++.|+++-...+.......+..|+ .|+.+++++....++|..+++.+...+.. ..+|
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~--- 155 (377)
T TIGR00890 89 -DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVIN--------LEGV--- 155 (377)
T ss_pred -HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHh--------cccH---
Confidence 2355566667799999998888888888877775 59999999999999998876665543321 1123
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
...|+..++++++..+..+..
T Consensus 156 -------~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 156 -------PAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHh
Confidence 335666666666655544433
No 148
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.22 E-value=0.026 Score=58.11 Aligned_cols=109 Identities=13% Similarity=-0.031 Sum_probs=79.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+..++ .+|. ...+-+.+|.++.+++++..+..
T Consensus 45 ~~~s~~~l~~~~~~~~~g~l----~dr~-------g~k~~~~~~~~~~~~~~~~~~~~---------------------- 91 (381)
T PRK03633 45 VVSSSYFTGNLVGTLLAGYV----IKRI-------GFNRSYYLASLIFAAGCAGLGLM---------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 44455555555556655444 3442 22334677888877777665543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+....
T Consensus 92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 92 -VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33666777889999999999999888888999999999999999999999999999887653
No 149
>PRK10504 putative transporter; Provisional
Probab=97.22 E-value=0.018 Score=61.05 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+.++++...++.|++.....|.....+.+..|++.|+..+|+......+|..+++.+...+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~ 158 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV 158 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35666777899999999999999999999999999999999999888899998888876654
No 150
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.21 E-value=0.022 Score=57.85 Aligned_cols=107 Identities=18% Similarity=0.174 Sum_probs=72.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..++ .+|. ...+-+.+|.++.+++.+..+...
T Consensus 41 ~~~~~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~i~~~~~~~~~--------------------- 88 (366)
T TIGR00886 41 NLVAVPVLAGAVLRIILGFL----VDKF-------GPRYTTTLSLLLLAIPCLWAGLAV--------------------- 88 (366)
T ss_pred HhhHHHHHHHHHHHHHHHHH----HHHh-------CchHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 45555666666666665554 3443 222346678888777776665542
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
.+.++++...++.|++.... +.....+.+..|++.|+..++++.....+|..+++.+..
T Consensus 89 -~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 89 -QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMP 147 (366)
T ss_pred -hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 13566677788899987655 456789999999999999999988666666666655543
No 151
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.19 E-value=0.0039 Score=66.12 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+.++++..-++.|++|....|.....+.+..|++.|+.++|++.....+|..+++.+...+.
T Consensus 130 ~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~ 191 (465)
T TIGR00894 130 GIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC 191 (465)
T ss_pred CchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778899999999999999999999999999999999999999999999998887654
No 152
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.18 E-value=0.024 Score=57.95 Aligned_cols=83 Identities=16% Similarity=0.099 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|.++.+++....... .+.+.++...++.+++.....+.....+.+..|++.|
T Consensus 57 ~~~~~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 113 (377)
T PRK11102 57 PVILGGTLVFALAAVACALA-----------------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEF 113 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 44667777777776665543 2245566678899999999999999999999999999
Q ss_pred HHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 402 SIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+..+|++....++|..+++.+...+.
T Consensus 114 ~~~~~~~~~~~~~g~~~~~~~~~~l~ 139 (377)
T PRK11102 114 SRMMSFVTLVMTIAPLLAPIIGGWLL 139 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888876543
No 153
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0026 Score=69.22 Aligned_cols=239 Identities=17% Similarity=0.093 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCCC
Q 010840 5 FFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 84 (499)
Q Consensus 5 ~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~ 84 (499)
-.-+..+.+|..++-..|+. .+ ....+.|+...+...+ +..++|++++.|+++...
T Consensus 35 ~~~s~~~il~~e~~e~~a~~-g~----------------------~~nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~ 90 (571)
T KOG1237|consen 35 GWLSAPFILGNEVLERLAFF-GL----------------------VSNLVTYLTLELHASG-GGAANNVNAFGGTQFLLP 90 (571)
T ss_pred hhHhHHHHHHHHHHHHHhHh-cc----------------------hhHHHHHHHHHhccch-HHHHHHHHHHhhHHHHHH
Confidence 34466778888888877772 22 1335677777777777 889999999999999762
Q ss_pred ChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccC-CCCChHHHHHH
Q 010840 85 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL-PGGSPLTRVAQ 163 (499)
Q Consensus 85 ~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~-p~g~pl~~~~~ 163 (499)
-.-..+...|..+||.||+++++..+. .|+++...++.++..+-. .+.... ..++|-+....
T Consensus 91 --l~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a~~~~l~p~~~---~~~~~~~~c~~~s~~q~~ 153 (571)
T KOG1237|consen 91 --LLGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSAMIPALLPFMC---KFKPGGNVCESPSKLQLA 153 (571)
T ss_pred --HHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhcCCccc---cCCCCCCcccCcchHHHH
Confidence 222346888999999999999987543 566666666666543332 111111 11222233333
Q ss_pred HHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhh
Q 010840 164 VLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRL 243 (499)
Q Consensus 164 vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~ 243 (499)
++..+++....- .++. +..+++.++...+ ++..+++
T Consensus 154 ~~~~~l~lia~G-------------------~gg~------r~~~~~fGadQfd-------------~~~~~~~------ 189 (571)
T KOG1237|consen 154 VLYGALYLIALG-------------------AGGI------RPCLLAFGADQFD-------------ELDPVEV------ 189 (571)
T ss_pred HHHHHHHHheec-------------------cCCC------CCcchhhcccccC-------------ccCcchh------
Confidence 444444432110 0000 0011111111111 0111222
Q ss_pred hhhhhhHHHHHHHHhhchhhHHHHHhhhcc-cccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchh
Q 010840 244 VPIPACTIMLNVILTEFLTLSVQQAYTMNT-HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQ 322 (499)
Q Consensus 244 l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~-~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ 322 (499)
......+.|..+.|..+.++.|+..++. +..||.+-.+..+..|.+.++++.+......+| + +.-..
T Consensus 190 --~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~-------~---p~gsp 257 (571)
T KOG1237|consen 190 --KGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK-------K---PRGSP 257 (571)
T ss_pred --hCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee-------C---CCCCc
Confidence 1234567788888999999888876665 456788888888999999999998875543222 1 22226
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 010840 323 RVGIGLAVSILSVIWAGI 340 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~ 340 (499)
+..+|.++.+++.-..+.
T Consensus 258 ~t~i~~Vlvaa~~k~~~~ 275 (571)
T KOG1237|consen 258 KTRIGQVLVAAAFKRKAV 275 (571)
T ss_pred hhHHHHHHHHHHHHHhcc
Confidence 677888888877766543
No 154
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.15 E-value=0.0071 Score=64.66 Aligned_cols=115 Identities=13% Similarity=0.119 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-
Q 010840 321 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA- 399 (499)
Q Consensus 321 l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~- 399 (499)
.+-+.+|.++.+++.+..++. .+.++++...++.++|+-+..|....++.++.|++
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~-----------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~ 135 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMS-----------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGD 135 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCC
Confidence 344778888888777665543 22444555677899999999999999999988875
Q ss_pred --hhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 400 --MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 400 --mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
.|+...++++....+|..+|+.+...+... -+| ..-|...++.++++.++++...+.++
T Consensus 136 ~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~--------~g~----------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 136 MPRRDGGFTLFYMSINIGSFISPLLAGVIAEN--------YGY----------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred cccccceehhHHHHHHHHHHHHHHHHHHHHHh--------cCh----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 488899999999999999999988765421 123 34555556666666666666666654
No 155
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.14 E-value=0.011 Score=61.30 Aligned_cols=108 Identities=10% Similarity=0.015 Sum_probs=79.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+..++ .+|+ ...+-+..|+.+.+++.+..++.
T Consensus 48 ~~~s~~~~~~~l~~~~~g~l----~dr~-------G~r~~l~~~~~l~~~~~~~~~~a---------------------- 94 (393)
T PRK09705 48 LLTALPVVTMGGLALAGSWL----HQHV-------SERRSVAISLLLIAVGALMRELY---------------------- 94 (393)
T ss_pred HHHHHHHHHHHHHhhhhHHH----HHHh-------CchHHHHHHHHHHHHHHHHHHHC----------------------
Confidence 44455555666666665554 3442 33345788999988888887764
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++..-++.|+|+....+...+.+.+..| +.|+.++|++......|..+|+.+...+
T Consensus 95 -~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l 155 (393)
T PRK09705 95 -PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWL 155 (393)
T ss_pred -cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235556677899999999999999999988887 6799999999988888888888776653
No 156
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.10 E-value=0.011 Score=59.01 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=81.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+...+..++..|+..++ .+|.+ +.+-+.+|.++.+++.+.....
T Consensus 38 ~~~~~~~~~~~~~~~~~g~~----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~---------------------- 84 (352)
T cd06174 38 LIVSAFSLGYALGSLLAGYL----SDRFG-------RRRVLLLGLLLFALGSLLLAFA---------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHHhC-------CchhhHHHHHHHHHHHHHHHHh----------------------
Confidence 34445555555666655544 34432 2223667777777777665543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.+++..+..+....+..+..|++.|+..+|+......+|..+++.+...+.
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 147 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA 147 (352)
T ss_pred -ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 235667778899999999999999999999999999999999999999999999998887654
No 157
>PRK12382 putative transporter; Provisional
Probab=97.09 E-value=0.0027 Score=65.66 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~ 133 (499)
.++++..+.++|.|..-|...+...|.++++ +|.+.+.+++...++|..+++.+.+++.++.||+..|.+.++.
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 4555667778888887788777777776532 2678999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHh
Q 010840 134 MGISNMLFFI 143 (499)
Q Consensus 134 m~l~~i~f~~ 143 (499)
.++++++.+.
T Consensus 378 ~~~~~~~~~~ 387 (392)
T PRK12382 378 AVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHh
Confidence 8877775553
No 158
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=97.08 E-value=0.003 Score=66.34 Aligned_cols=85 Identities=14% Similarity=0.195 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHH-HHHHHHHHHHHHHHHHHhhc------cchH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWG 124 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~~~~~i~~~------~g~~ 124 (499)
.+.+++...+.+++.+...++...++.|.+++++ |.+.+.+++ ...++|..+|+.+.+++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 3456677788888888888998899999887432 678899997 56789999999999999887 4699
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010840 125 SAFGALAIAMGISNMLFF 142 (499)
Q Consensus 125 ~~F~i~~~~m~l~~i~f~ 142 (499)
..|.++++..+++.+.+.
T Consensus 382 ~~f~~~~~~~~i~~~l~~ 399 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFM 399 (418)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999887776665555433
No 159
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.07 E-value=0.017 Score=60.34 Aligned_cols=115 Identities=13% Similarity=0.020 Sum_probs=77.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..++ .+|+. ..+-+.++.++.+++++..+..... ..
T Consensus 56 ~~~~~~~l~~~~~~~~~G~l----~dr~g-------~~~~l~~~~~~~~~~~~~~~~~~~~-----------------~~ 107 (417)
T PRK10489 56 LSVTLTGGAMFIGLMVGGVL----ADRYD-------RKKLILLARGTCGLGFIGLALNAFL-----------------PE 107 (417)
T ss_pred HHHHHHHHHHHHHHHhhHHH----hhhcC-------CceEEEehHHHHHHHHHHHHHHHHc-----------------CC
Confidence 44555555666666655443 34432 2222445666666666554432110 01
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.+++..+..+.....+.+..|++.|+...+++....++|..+|+.+...+.
T Consensus 108 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 108 -PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 345666677888899999999999999999999999999999998888888888888876543
No 160
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.05 E-value=0.039 Score=58.80 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 402 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~ 402 (499)
-+.++.++.+++.+..++. .+.++++...++.|++.....+.....+.+..|++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~ 143 (496)
T PRK03893 87 AMVISIVLFSVGTLACGFA-----------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN 143 (496)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3566777777766665543 33566777889999999999999999999999999999
Q ss_pred HHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 403 IGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 403 ~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
..+|++....++|..+++.+...+.
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998877643
No 161
>PTZ00207 hypothetical protein; Provisional
Probab=97.02 E-value=0.031 Score=61.08 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=85.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
.+.+-+.+|.++.+++.+..++.... ... .+.+.+....++.|+|+.+..+.....+.+..|
T Consensus 89 G~R~vllig~ll~~iG~ll~ala~~~----------------~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp- 150 (591)
T PTZ00207 89 GPRPIFVLSMTVFCLGTLLFALTFQE----------------VIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP- 150 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcc----------------ccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence 44555788999999988887764210 011 346667778899999999999999988888887
Q ss_pred hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
+.||.++|++....++|..+.+.+...+.. . +| ..++++++++.++..++.+.+.+...
T Consensus 151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~--------~~----------~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D--------NT----------SAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------hH----------HHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 679999999999999999864444432210 0 12 34677777877777666666555543
No 162
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.02 E-value=0.027 Score=59.66 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|.++.+++.+..++... .. .+.++++...++.++++....|.....+.+..|++.|
T Consensus 94 ~~l~~~~~~~~i~~~~~~~~~~------------------~~-~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r 154 (452)
T PRK11273 94 VFLPAGLILAAAVMLFMGFVPW------------------AT-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKER 154 (452)
T ss_pred hhHHHHHHHHHHHHHHHHhhhc------------------cc-ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHH
Confidence 3466777777777766655421 00 2355666778899999998888877888889999999
Q ss_pred HHHHhHHHHHhHHHHHHHhhh
Q 010840 402 SIGSAYAALAGGLGCFAASIL 422 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l 422 (499)
+..+|++.....+|..+.+.+
T Consensus 155 ~~~~~~~~~~~~~g~~~~~~l 175 (452)
T PRK11273 155 GGIVSVWNCAHNVGGGLPPLL 175 (452)
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 999999988888886544433
No 163
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=96.99 E-value=0.72 Score=49.68 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.+.+.=.+.+++.++.-.+...+++|.+.++. |...-++ +.....|+.+++.+.+|+-+ +|++.+++.
T Consensus 170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 45677777788999999999999999999998644 4566666 77778888889999998875 899999887
Q ss_pred HHHHHHHHHH
Q 010840 131 AIAMGISNML 140 (499)
Q Consensus 131 ~~~m~l~~i~ 140 (499)
.+..++.++.
T Consensus 241 ~~~~~~~~~~ 250 (521)
T KOG0255|consen 241 SIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHH
Confidence 7776666555
No 164
>TIGR00898 2A0119 cation transport protein.
Probab=96.95 E-value=0.0063 Score=65.19 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=77.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+.+++..+..++..++...+ ..|.++ .+-+.++.++.+++.+..++.
T Consensus 131 ~~~s~~~~g~~~g~~~~g~l----~Dr~Gr-------r~~~~~~~~~~~i~~~~~~~~---------------------- 177 (505)
T TIGR00898 131 LTQSCFFVGVLLGSFVFGYL----SDRFGR-------KKVLLLSTLVTAVSGVLTAFS---------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHhHHHh----hhhccc-------hHHHHHHHHHHHHHHHHHHHc----------------------
Confidence 44555556666666665543 344321 122555666666555544432
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
.+.++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.+...
T Consensus 178 -~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 178 -PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred -ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888999999999999999999999999999999999999999999888877654
No 165
>TIGR00901 2A0125 AmpG-related permease.
Probab=96.93 E-value=0.036 Score=56.27 Aligned_cols=63 Identities=16% Similarity=0.042 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.+++...+++.+++-.+..|...+++.+..|++.|+...|+.....++|..+++.+...+.
T Consensus 81 ~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~ 143 (356)
T TIGR00901 81 TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA 143 (356)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666677788888888999999999999999999999999999999999999988876654
No 166
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.92 E-value=0.024 Score=59.74 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 010840 324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI 403 (499)
Q Consensus 324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~ 403 (499)
+.+|.++.+++.+..+.... .. .+.+.+....++.++++....+.....+.+..|++.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~------------------~~-~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~ 154 (438)
T TIGR00712 94 LPAGLILSAAVMLLMGFVPW------------------AT-SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGT 154 (438)
T ss_pred hHHHHHHHHHHHHHHhcccc------------------cc-chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchh
Confidence 55677777776665543311 01 234445566788999999988989999999999999999
Q ss_pred HHhHHHHHhHHHHHHHhhhhhh
Q 010840 404 GSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 404 ~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
.+|++....++|..+++.+...
T Consensus 155 ~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 155 IVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred HHHHHHHHHHhHhHHHHHHHHH
Confidence 9999999999999888776553
No 167
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=96.87 E-value=0.027 Score=58.46 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=75.1
Q ss_pred HHHHHHHHHhhhhcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHH
Q 010840 299 LYYSTFVPLCRRITGHPRGASQLQR-VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI 377 (499)
Q Consensus 299 l~~~i~~p~~~r~~~~~~~~s~l~r-i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~ 377 (499)
+...+|-|+..|..... ....++ +.++.++.+++++..++.+. . .+++++...+++.
T Consensus 47 ~~~~l~g~~~Dr~~~~~--~g~rr~~l~~~~~~~~l~~~~l~~~~~-------------------~-~~~~~l~~~~~~~ 104 (402)
T PRK11902 47 IFKFLWAPLMDRYTPPL--LGRRRGWLLLTQVGLAASIAAMAFCPP-------------------H-AALWPLAGLAVLV 104 (402)
T ss_pred HHHHHHHHHHHcccccC--CCcchhHHHHHHHHHHHHHHHHHhcCc-------------------c-chHHHHHHHHHHH
Confidence 33445566666642110 122333 66666777666666554310 1 3466667777888
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 378 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 378 ~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
++......|...+++.+..|++.|+.+.++.....++|..+++.+...+.
T Consensus 105 ~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 105 AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 89999999999999999999999999999999989999999988776543
No 168
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.85 E-value=0.17 Score=54.52 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
+++++.+++.+|.++...+. +...+++|=.+.++|.|+..-.+..+++|.-+
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~----------------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap 172 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAP----------------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAP 172 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCC
Confidence 67888999999999888762 34688999999999999988777767766654
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 140 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~~~~m~l~~i~ 140 (499)
.+ .|...-+.+.+++++|.+++..+....++. ++|+..+++..+..++-.+.
T Consensus 173 ~~------~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 173 AH------IRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred hh------hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 32 267888889999999999995555545433 48998887665555444443
No 169
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=96.84 E-value=0.74 Score=47.76 Aligned_cols=101 Identities=19% Similarity=0.265 Sum_probs=70.3
Q ss_pred HHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHH
Q 010840 302 STFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAE 381 (499)
Q Consensus 302 ~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE 381 (499)
.++.|.+.++ ....+-+-+|+++..+..+.+-..+. + . -+|..- ++.+..-
T Consensus 305 ~ii~g~Ld~r------fg~k~vl~~~lvi~~~~~~~~~~~~~-------------------~-~-~f~i~g--ll~g~s~ 355 (438)
T COG2270 305 AIIAGFLDER------FGSKPVLMIGLVILSIAALYLIFLEG-------------------E-L-DFWILG--LLVGTSL 355 (438)
T ss_pred HHHHHHHHHH------hCCceeehHHHHHHHHHHHHHHHccc-------------------c-H-HHHHHH--HHHHHhc
Confidence 4455555543 23335566777777766666554431 1 2 234332 4455555
Q ss_pred HHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccC
Q 010840 382 VFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 431 (499)
Q Consensus 382 ~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~ 431 (499)
-=+....=++..+.+|++..+...|+|.++.-.++.+|+.+++++..+|+
T Consensus 356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 55666777899999999999999999999999999999999999887764
No 170
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.80 E-value=0.064 Score=55.37 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.++++...++.|++.....+...++..+..|++.++..++.+.....+|..+++.+...+.
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 156 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLT 156 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888999988888888889999999999999999998888888888887776543
No 171
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.75 E-value=1 Score=47.88 Aligned_cols=82 Identities=16% Similarity=0.074 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHH---
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF--- 127 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F--- 127 (499)
+...+.+.-++.++|.|..- .....+..-+++ +| |.++..++-.+.++|.++++.+++++. +.||+.-+
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~---kE---R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln 185 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP---SR---YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHH
Confidence 35567777788999999987 888888888883 32 688899999999999999999999864 67887544
Q ss_pred HHHHHHHHHHHHH
Q 010840 128 GALAIAMGISNML 140 (499)
Q Consensus 128 ~i~~~~m~l~~i~ 140 (499)
.|....+.+++++
T Consensus 186 ~Isl~s~~~a~~~ 198 (511)
T TIGR00806 186 IISLVFMTFSVFL 198 (511)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555555553
No 172
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.75 E-value=0.16 Score=56.23 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-----------
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------- 119 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~----------- 119 (499)
...++++|..+.++|.- .+.+++.-..||...++ +...++.+.|..--+|-++|.+++++.-+
T Consensus 236 ~~llff~~q~l~GIG~T----pi~tlGisYiDDnvk~~--~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~ 309 (735)
T KOG3626|consen 236 PFLLFFLGQLLLGIGAT----PIFTLGISYIDDNVKKK--NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIG 309 (735)
T ss_pred hHHHHHHHHHHhhcCCC----CCccCCCcccccccccc--CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCC
Confidence 34478888888888854 45556665555543322 24678888888888999999888887532
Q ss_pred -------cc-chHHHHHHHHHHHHHHHHHHHhc
Q 010840 120 -------EH-GWGSAFGALAIAMGISNMLFFIG 144 (499)
Q Consensus 120 -------~~-g~~~~F~i~~~~m~l~~i~f~~g 144 (499)
.+ .||+||++++..++++.+.+++.
T Consensus 310 it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~f 342 (735)
T KOG3626|consen 310 ITPTDPRWIGAWWLGFLICGALLLFSAVPLFFF 342 (735)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 13 49999999999999888866653
No 173
>PTZ00207 hypothetical protein; Provisional
Probab=96.72 E-value=1.2 Score=48.80 Aligned_cols=109 Identities=10% Similarity=0.045 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.++..+|+++..++.. ... + .+.+.+++...+.++|.|.+.+.....+.+.|+
T Consensus 93 vllig~ll~~iG~ll~ala~~-~~i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp 150 (591)
T PTZ00207 93 IFVLSMTVFCLGTLLFALTFQ-EVI-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP 150 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccc-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 577889999999998888633 111 1 246677888889999999888888888888885
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHHHH-HHHHHHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIA-MGISNMLFF 142 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i-~~~~~~~i~~~~g~~~~F~i~~~~-m~l~~i~f~ 142 (499)
+ +|.....+...+.++|+.+ +++...++.+ +|+..|.+.++. .+++++...
T Consensus 151 ~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 151 S-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred h-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHh
Confidence 2 1577999999999999875 6666666654 455555544443 334444333
No 174
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.62 Score=48.17 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=59.3
Q ss_pred HHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHH
Q 010840 58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAM 134 (499)
Q Consensus 58 ~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g---~~~~F~i~~~~m 134 (499)
.=.++++|-|-| +.-.+....-|++++ +..+..++= +-|+|..+...+.+.+....| |+..-.+..+.+
T Consensus 111 ~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l 182 (417)
T COG2223 111 IGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVAL 182 (417)
T ss_pred HHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334455554444 444556777777543 466777777 889999999999999988888 898888888888
Q ss_pred HHHHHHHHhccc
Q 010840 135 GISNMLFFIGTP 146 (499)
Q Consensus 135 ~l~~i~f~~g~~ 146 (499)
+++.+.+.++.+
T Consensus 183 ~v~~v~~~~~~~ 194 (417)
T COG2223 183 AIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHhC
Confidence 888877766543
No 175
>PRK11043 putative transporter; Provisional
Probab=96.71 E-value=0.077 Score=54.88 Aligned_cols=82 Identities=16% Similarity=0.016 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|.++.+++.+..+.. .+.++++...++.|++.....+.....+.+..|++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~ 128 (401)
T PRK11043 72 PVLLAGLSLFALGSLGMLWV-----------------------ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKA 128 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHH
Confidence 34666776666666554432 3356667777888998888888888899999999988
Q ss_pred HHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 402 SIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+...+......++|..+++.+...+
T Consensus 129 ~~~~~~~~~~~~~~~~~g~~i~~~l 153 (401)
T PRK11043 129 NRVFATIMPLVALSPALAPLLGAWL 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777777777776554
No 176
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=96.67 E-value=0.057 Score=58.00 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+.++++..-++.|+++....+....+..+..|++.||..++++.....+|..+++.+...+
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~ 174 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV 174 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999999999999999999999999999988887654
No 177
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.66 E-value=0.046 Score=57.98 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLI-QYCLIGIAEVFCIVGLLEFLYEEAPDAM 400 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~-~~~l~~igE~~~~p~~~ef~~~~aP~~m 400 (499)
+-+.+|.++.+++.+..+... +.+.++. .-++.|+++....+.....+.+..| +.
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~ 140 (455)
T TIGR00892 85 PVVIAGGLLASLGMILASFSS-----------------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR 140 (455)
T ss_pred HHHHhhHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh
Confidence 345667777766666554431 2333332 2367788888766666677777665 68
Q ss_pred hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 401 KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 401 r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
|+..+|++....++|..+++.+...+... -+| ..-|++.++++++..+..++.
T Consensus 141 r~~a~g~~~~~~~~g~~~~~~l~~~l~~~--------~gw----------r~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 141 RPLANGLAMAGSPVFLSTLAPLNQYLFES--------FGW----------RGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHH--------hCh----------HHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888877654321 124 235666666666555544333
No 178
>PRK10133 L-fucose transporter; Provisional
Probab=96.63 E-value=0.15 Score=53.80 Aligned_cols=110 Identities=13% Similarity=0.053 Sum_probs=77.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCc
Q 010840 285 MPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPD 364 (499)
Q Consensus 285 l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~ 364 (499)
+.+...+...+..|+..+ +.+|+ ...+-+.+|+++.+++.+....... .
T Consensus 66 ~~~~~~~g~~i~~~~~g~----l~dr~-------G~r~~l~~g~~~~~~~~~l~~~~~~-------------------a- 114 (438)
T PRK10133 66 IQSAFYFGYFIIPIPAGI----LMKKL-------SYKAGIITGLFLYALGAALFWPAAE-------------------I- 114 (438)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHh-------CcHHHHHHHHHHHHHHHHHHHHHHh-------------------c-
Confidence 344445555566665544 34543 2334477888888887765432110 0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
.+.++++...++.|+|.....+....++.+.+|++.+...++++....++|..+++.+...
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777889999999999999999999998888888777888888888888888877654
No 179
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.58 E-value=0.099 Score=54.42 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCC-cccccCc
Q 010840 368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPN-WLAQNIN 446 (499)
Q Consensus 368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~-w~~~~ln 446 (499)
+++...-.+++..+.-..|++.|+.-+..=+...+...|+-.+ .|...+..+....+...+ ..+.++ |.+.
T Consensus 360 viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~---~gq~f~~~~~~~~~~~~~--~~~~~~~~~~~--- 431 (480)
T KOG2563|consen 360 VIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNL---SGQIFGVILVFIMGILAE--DLGPPGNTFPA--- 431 (480)
T ss_pred EehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEe---ehhHHHHHHHHHHHHHhh--ccCCCCCCccc---
Confidence 3344445678888889999999999988888888888876544 444444444444332221 110111 2111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 010840 447 TGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 483 (499)
Q Consensus 447 ~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~ 483 (499)
-+.++..+.+.+++-.+....|+++++|.+
T Consensus 432 -------~i~~~~~~~l~~~lva~~r~~y~R~~~e~~ 461 (480)
T KOG2563|consen 432 -------NIFLTVSALLGAILVAFFRPDYRRLRAEAG 461 (480)
T ss_pred -------hhHhHHHHHHHHHHHhhhhhhHHhHhhhhc
Confidence 122445555556666677778887776654
No 180
>PRK11010 ampG muropeptide transporter; Validated
Probab=96.58 E-value=0.2 Score=53.82 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhhcCCCCCCCchhh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHH
Q 010840 299 LYYSTFVPLCRRITGHPRGASQLQR-VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLI 377 (499)
Q Consensus 299 l~~~i~~p~~~r~~~~~~~~s~l~r-i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~ 377 (499)
+...+|-|+..|++.. + ....++ +.++.++.+++....++.+. . .+.+|+....++.
T Consensus 60 ~~~~l~gpl~Dr~~~~-~-~Grrr~~ll~~~i~~~~~~~~~a~~~~-------------------~-~~l~~l~~~~~l~ 117 (491)
T PRK11010 60 VFKFLWSPLMDRYTPP-F-LGRRRGWLLATQLLLLVAIAAMGFLEP-------------------G-TQLRWLAALAVVI 117 (491)
T ss_pred HHHHHHHHHHHccccc-C-CCCchHHHHHHHHHHHHHHHHHHHcCC-------------------c-chHHHHHHHHHHH
Confidence 4556677777775321 0 122222 55666666666655554310 1 4577888888899
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 378 GIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 378 ~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+++-....+...++..+..|++.|+...|+......+|..+++.+...+.
T Consensus 118 ~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 118 AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776544
No 181
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.52 Score=49.84 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=94.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccC--C
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLT--A 361 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~--~ 361 (499)
-+..++.+.+-+...+..-.+.++.||. ++ +....-+.+|.++..++++..-+. ...+..+.++.+. .
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~ri-r~---fg~~~~~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~ 348 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRI-RG---FGRKPTVLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLL 348 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhh-hh---cccCcchhHHHHHHHHHHHHHhcc------ccccCCCCCCcccccc
Confidence 4455555555555555444444544443 22 344444777777666555443322 1111111010000 0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcc
Q 010840 362 MPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWL 441 (499)
Q Consensus 362 ~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~ 441 (499)
.. -+...-...++++|++|.+....-+..+....| +-|..+-+++-+..++++.++.+.....
T Consensus 349 ~~-~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~~--------------- 411 (461)
T KOG3098|consen 349 FT-PSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPYL--------------- 411 (461)
T ss_pred cc-cchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence 00 122223345799999999999999999999994 4566777788888888887755543210
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 010840 442 AQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRS 479 (499)
Q Consensus 442 ~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~ 479 (499)
.+..+...+.+.+.+..+++..+.++++...
T Consensus 412 -------~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~ 442 (461)
T KOG3098|consen 412 -------LLYIYTLGLPIFCVIATTIFFIVAERTQAME 442 (461)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233556677888888888988988886543
No 182
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.51 E-value=0.014 Score=64.51 Aligned_cols=153 Identities=10% Similarity=0.115 Sum_probs=96.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH----hhhhhh-----hcC-------Ccc---c------ccC---CCCcchHH-H
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERY----RRNYAI-----SHG-------YEF---S------FLT---AMPDLSAY-W 369 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~----r~~~~~-----~~g-------~~~---~------~~~---~~~~~s~~-w 369 (499)
..++-|++|.++++++.++.++-+.. +++... +.. +.+ + ++. ...+..+| .
T Consensus 160 HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 239 (735)
T KOG3626|consen 160 HRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL 239 (735)
T ss_pred CccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH
Confidence 44566999999999999998876543 111110 000 000 0 000 01101122 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc----c-cCCC--CCCCCCccc
Q 010840 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS----V-TGNP--KKGQPNWLA 442 (499)
Q Consensus 370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~----~-t~~~--~~~~~~w~~ 442 (499)
++..-++.|+|+.-+.+.|..++.+.+-++.-.+|.|+.+....+|-.+|-+++++..+ . ..++ ...||.|+.
T Consensus 240 ff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 240 FFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhh
Confidence 55678999999999999999999999999999999999998887776666666555432 2 1111 122566642
Q ss_pred ccCccchhHH-HHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 443 QNINTGRFDY-LYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 443 ~~ln~~~l~~-~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
..| =|.+.++++++..+-++.+-|.+.+.
T Consensus 320 -------AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 320 -------AWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 122 23456667777777777777777643
No 183
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.51 E-value=0.00041 Score=75.15 Aligned_cols=107 Identities=15% Similarity=0.052 Sum_probs=3.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHH----hhhhhh-----h----cCC--------cc------cccCCCCcchHHHHH
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERY----RRNYAI-----S----HGY--------EF------SFLTAMPDLSAYWLL 371 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~----r~~~~~-----~----~g~--------~~------~~~~~~~~~s~~wli 371 (499)
..++-+++|.+++++|.++.++-+.. +.+... + +-+ .+ .......+...++++
T Consensus 66 hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 145 (539)
T PF03137_consen 66 HRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFI 145 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHH
Confidence 45566999999999999888765432 111110 0 001 00 000011112346677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
...++.|+|..-.++.|.+++.+.++++.-++|+|+.+....+|..+|-++.+.
T Consensus 146 ~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~ 199 (539)
T PF03137_consen 146 LGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSF 199 (539)
T ss_dssp ------SSS---------------------------------------------
T ss_pred HHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHH
Confidence 888999999999999999999999999999999999999988888777666544
No 184
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.057 Score=57.84 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 446 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln 446 (499)
.+-++..-+++|+.|-...|........-=.++.|+..+|+|+...++|+.+|+++...+.+... ..+..+|
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~--~~~~~gW------ 205 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG--SGGLAGW------ 205 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC--CCCcCCc------
Confidence 45566678999999999999999999999999999999999999999999999999887543221 1123456
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840 447 TGRFDYLYWLLAVLSVINFCAFLYSAY 473 (499)
Q Consensus 447 ~~~l~~~f~~la~l~~~~~~~~~~~~~ 473 (499)
-+.|..-++++++..++-.+.-+
T Consensus 206 ----~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 206 ----RWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred ----eeehhHHHHHHHHHHheEEEEec
Confidence 45788888888777765444443
No 185
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.50 E-value=0.04 Score=58.54 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 402 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~ 402 (499)
-+.+|++.-.+++.+.++.+. -|++-...+....-.+..|...+++.+++.++-+|
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~------------------------~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g 365 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATE------------------------TWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQG 365 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhcc------------------------chhhhHHHHHHHhhcchhHHHHhHHHhhccccccc
Confidence 477888888888888887632 24444556666667889999999999999999999
Q ss_pred HHHhHHHHHhHHHHHHHhhhhhhhccccC
Q 010840 403 IGSAYAALAGGLGCFAASILNSIIKSVTG 431 (499)
Q Consensus 403 ~~~gl~~l~~a~g~~l~~~l~~~v~~~t~ 431 (499)
..+++.....++.+.+++.+.+.+...+.
T Consensus 366 ~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 366 KVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred chhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999888766553
No 186
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.48 E-value=0.11 Score=53.47 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccC
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 445 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~l 445 (499)
+.++++..-++.|+||.. .+.....+.+..|++.|+.++|++.....+|..+++.+...+.. .-+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~--------~~gW----- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT--------AGGL----- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------ccch-----
Confidence 477888889999999986 45566666889999999999999999999999999988877542 1246
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhh
Q 010840 446 NTGRFDYLYWLLAVLSVINFCAFLYSA 472 (499)
Q Consensus 446 n~~~l~~~f~~la~l~~~~~~~~~~~~ 472 (499)
...|...++++++..++.....
T Consensus 144 -----r~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 144 -----QLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHc
Confidence 2356666777666555444433
No 187
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.46 E-value=0.055 Score=57.72 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh--HHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr--~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
++.+..+.+..++--...+..-+++.+..|++.| +.+.+......++|+.+|..+..+
T Consensus 115 ~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 115 IVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666667778999999999876 578888888889999999888765
No 188
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.37 E-value=0.23 Score=51.49 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=72.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+...+...+..|+..++ .+|. +..+-+.+|.++.+++++....... ..
T Consensus 52 ~~~~~~~~~~~i~~~~~g~l----~dr~-------g~k~~l~~~~~~~~~~~~~~~~~~~------------------~~ 102 (402)
T TIGR00897 52 SAFTLYGIAAAISAWISGVV----AEII-------GPLKTMMIGLLLWCVGHAAFIVFGL------------------GH 102 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHc-------CcHHHHHHHHHHHHHHHHHHHHHhc------------------cC
Confidence 33444555555565655443 4442 3334466777777776544322211 01
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHH-HHHhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGC-FAASILNSI 425 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~-~l~~~l~~~ 425 (499)
.+++.++...++.|++.....+.....+.+..|++.|+..+|++....++|. .+++.+...
T Consensus 103 -~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 103 -ANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred -ccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345555678888998888888888888899999999999999999988886 466666543
No 189
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=96.27 E-value=0.13 Score=53.48 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=75.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...++.|+..++ ..|+. ..+-+.++.++.+++.+..+..
T Consensus 42 ~~~~~~~l~~~l~~~~~G~l----aDr~g-------rr~vl~~~~~~~~~~~~~~~~~---------------------- 88 (393)
T PRK11195 42 LLQMFFVLAYIVLAPFVGAF----ADSFP-------KGRVMFIANGIKLLGCLLMLFG---------------------- 88 (393)
T ss_pred HHHHHHHHHHHHHHhhhhHh----hhccC-------CchhhHHHHHHHHHHHHHHHHH----------------------
Confidence 45555666667777776554 44432 2233556666655554443322
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+. +...+++|+++.+..|.....+.+..|++.|+.+.|+......+|..+|+.+..++.
T Consensus 89 -~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 89 -IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred -HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112 334578999999999999999999999999999999999988888899888877643
No 190
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=96.26 E-value=0.074 Score=57.11 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=66.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
...+-+.+|.++.+++.+.+++... . ..-++...+++++|+-+..|....++.++-|+
T Consensus 79 G~r~~~~~g~~~~~~g~~~~~~~~~---------------------~-~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~ 136 (489)
T PRK10207 79 GTKRTIVLGAIVLAIGYFMTGMSLL---------------------K-PDLIFIALGTIAVGNGLFKANPASLLSKCYPP 136 (489)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcc---------------------c-hhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence 3445578888888888777665310 0 11133457788999999999999999999987
Q ss_pred h--hhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 399 A--MKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 399 ~--mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+ .|+...+++++...+|..+|+.+...+.
T Consensus 137 ~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 137 KDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred CchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7 4577899999999999999988877654
No 191
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=96.26 E-value=0.17 Score=53.65 Aligned_cols=83 Identities=13% Similarity=0.153 Sum_probs=70.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010840 320 QLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA 399 (499)
Q Consensus 320 ~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~ 399 (499)
..+-+.++++..++..+..++. .|.+.+...-++.|++|.... .....+++-.|++
T Consensus 91 ~K~vL~l~~l~Wsl~t~L~~fa-----------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k 146 (511)
T TIGR00806 91 YKPVLVLQALSFVCVWLLLLLG-----------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS 146 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH
Confidence 3445677777777666666654 347778888999999999999 9999999999999
Q ss_pred hhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 400 MKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 400 mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.|+.++|++..+..+|..+++.++.++
T Consensus 147 ER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 147 RYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999873
No 192
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=96.24 E-value=0.15 Score=54.50 Aligned_cols=79 Identities=15% Similarity=0.085 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+-+.+|.++.+++.+..+.. .+.+.++...++.|+++....+ ....+.+..|++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~-----------------------~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~r 157 (476)
T PLN00028 102 YGSAFLLMLTAPAVFCMSLV-----------------------SSATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGKIV 157 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChhhe
Confidence 34566777666665554443 2244455567889999876544 45678899999999
Q ss_pred HHHHhHHHHHhHHHHHHHhhhhh
Q 010840 402 SIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 402 ~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
|..+|++.....+|..+++.+..
T Consensus 158 g~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 158 GTANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988666666666655543
No 193
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=96.18 E-value=0.13 Score=61.07 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.|+++++..-+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+.+++.
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~ 168 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT 168 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888999999999999999999999999999999999999999999999999988764
No 194
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=96.18 E-value=0.2 Score=59.38 Aligned_cols=62 Identities=11% Similarity=-0.004 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
++++++...++.|++..+..|....++.+..|++.|+.++|+.....++|..+|+.+...+.
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~ 163 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLF 163 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788899999999999999999999999999999999999999999999988887654
No 195
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=96.08 E-value=0.16 Score=54.77 Aligned_cols=117 Identities=11% Similarity=0.069 Sum_probs=77.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840 321 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 400 (499)
Q Consensus 321 l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m 400 (499)
.+-+.+|.++.+++....++.. .+.+++....++.++|.-+..|....++.++-|++.
T Consensus 88 r~~~~~g~~~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 88 KRVIMLGAIVLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD 145 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence 3447778877777766555421 113344456778899999888988899999887643
Q ss_pred --hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840 401 --KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 477 (499)
Q Consensus 401 --r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~ 477 (499)
++...++++....+|..+|+.+...+... -+| .+-|++.++..++..+.++...++++.
T Consensus 146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~--------~g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~ 206 (500)
T PRK09584 146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAK--------YGW----------SVAFALSVVGMLITVVNFAFCQRWVKQ 206 (500)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHh--------hCH----------HHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 44577888888999999998887765421 123 334555565566666666666555554
No 196
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.05 E-value=0.047 Score=55.55 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840 321 LQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 400 (499)
Q Consensus 321 l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m 400 (499)
.+-+.+|.++.+++.+..+..... .. ... ...++++...++.|++.....+.....+.+..|++.
T Consensus 65 r~~l~~~~~~~~~~~~~~~~~~~~-----------~~---~~~-~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T TIGR00883 65 KKTLVITLLMMGIGTLLIGLLPSY-----------AT---IGI-WAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK 129 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCh-----------hh---hHH-HHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence 344667777777776666554210 00 000 112346667789999999999999999999999999
Q ss_pred hHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 401 KSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 401 r~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
|+.+++++.....+|..+++.+...+.
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988766543
No 197
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=95.94 E-value=0.33 Score=49.27 Aligned_cols=90 Identities=12% Similarity=-0.014 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHH--HhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIG--SAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 444 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~--~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ 444 (499)
.++++..-++.+.++....|...+...+..|++.|+.. .+......++|..+++.+....... -+|
T Consensus 87 ~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~--------~~~---- 154 (375)
T TIGR00899 87 YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG--------FGF---- 154 (375)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh--------ccc----
Confidence 45555555677777777888888888888888776643 5666666777888877776654310 124
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840 445 INTGRFDYLYWLLAVLSVINFCAFLYSAYR 474 (499)
Q Consensus 445 ln~~~l~~~f~~la~l~~~~~~~~~~~~~~ 474 (499)
...|++.+.++++..++.+...++
T Consensus 155 ------~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 155 ------TVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 235666666666555554443343
No 198
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.11 Score=55.20 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=88.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
...+-+.++.++.+++-+..-.... .+.+.++..=+++|++|-...|.......+-+|+
T Consensus 101 G~r~v~~~~~~~sa~~t~l~P~aa~---------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~ 159 (466)
T KOG2532|consen 101 GARRVFFISGLISALLTLLTPLAAS---------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP 159 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH---------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence 4456688888888877666555432 3445667788999999999999999999999999
Q ss_pred hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840 399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAY 473 (499)
Q Consensus 399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~ 473 (499)
+.|++..++......+|..++..+.+..-.. +-+| ..-|.+.++++++-.+++..+.+
T Consensus 160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-------~~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 160 NERSTFIAILTAGSQLGTIITMPVSGLLCES-------SLGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-------CCCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998889999888777664421 2357 34566677777776666666554
No 199
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=95.82 E-value=0.15 Score=54.59 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHH
Q 010840 297 LSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCL 376 (499)
Q Consensus 297 ~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l 376 (499)
.|+-.-+.-++..|+ ...+-+.+++++.+++.+..++.+.+- .-| . ..+.+++..-++
T Consensus 70 ~~ig~~~~G~l~Dr~-------Grr~~l~~~~~l~~i~~~~~a~~~~~~-----~~g---------~-~a~~~l~~~R~l 127 (490)
T PRK10642 70 RPLGGLFFGMLGDKY-------GRQKILAITIVIMSISTFCIGLIPSYA-----TIG---------I-WAPILLLLCKMA 127 (490)
T ss_pred HHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHHHHHHHhcccHH-----HHH---------H-HHHHHHHHHHHH
Confidence 334444444556664 334557788888888887777653210 000 0 112246777899
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 377 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 377 ~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.|+|+-...+....++.+..|++.||.+++++.....+|..+|+.+..++
T Consensus 128 ~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 128 QGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred HHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988888888888666543
No 200
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=95.81 E-value=0.2 Score=52.54 Aligned_cols=108 Identities=10% Similarity=0.038 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHH
Q 010840 297 LSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCL 376 (499)
Q Consensus 297 ~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l 376 (499)
.|+-..+.-++..|+ ...+-+.+++++.+++.+..++.... .. ... .++.+++..-++
T Consensus 76 ~~ig~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~-----------~~---~~~-~~~~~l~~~R~l 133 (432)
T PRK10406 76 RPIGGWLFGRIADKH-------GRKKSMLISVCMMCFGSLVIACLPGY-----------ET---IGT-WAPALLLLARLF 133 (432)
T ss_pred HHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHHHHHHHhhcCCc-----------hh---HHH-HHHHHHHHHHHH
Confidence 344444555666664 33345777888877777666554210 00 000 234567777889
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 377 IGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 377 ~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+|+|+-...|....++.+..|++.||.+++++......|..++..+...+
T Consensus 134 ~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~ 183 (432)
T PRK10406 134 QGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVL 183 (432)
T ss_pred HHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888877665443
No 201
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=95.79 E-value=0.68 Score=47.85 Aligned_cols=93 Identities=13% Similarity=-0.010 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWL---LIQYCLIGIAEVFCIVGLLEFLYEEAPDA 399 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wl---i~~~~l~~igE~~~~p~~~ef~~~~aP~~ 399 (499)
-|-.|.++.+.+...+...-...- ...+. ... .++.|+ ...|.+.|+|=-...-..+++..+.+||+
T Consensus 52 yI~~G~~~~~~g~~~ap~a~~~l~-~~~~~--------~~~-~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~ 121 (403)
T PF03209_consen 52 YIWGGTLLQAGGLAIAPFALLLLA-ESGQQ--------SSG-PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE 121 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-ccccc--------ccc-ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh
Confidence 377888888887777665433210 00000 011 223443 46889999999999999999999999999
Q ss_pred hhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 400 MKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 400 mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
-|+...++-+.+.=+|..+++.+...
T Consensus 122 ~R~~~v~ivw~Mli~G~iv~ai~~g~ 147 (403)
T PF03209_consen 122 RRPRVVAIVWVMLIVGIIVSAIVFGR 147 (403)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998999998877654
No 202
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=95.71 E-value=0.3 Score=49.57 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=72.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+.+.+...+..|+..++. +|+ ...+.+.+|.++.+++.+.. ..
T Consensus 39 ~~~s~~~~~~~~~~~~~g~l~----dr~-------g~r~~~~~~~~~~~~~~~~~-~~---------------------- 84 (355)
T TIGR00896 39 LLTALPVLCFAVLAPLAPWLA----RRF-------GEERSVAAGLLLIAAGILIR-SA---------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHhHHHHH----HHh-------CchHHHHHHHHHHHHHHHHH-Hh----------------------
Confidence 455666667777777766643 332 22233566766655554432 11
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.+++..+..+.....+.+..|+ .|+..+|++.....+|..+++.+...+
T Consensus 85 -~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l 145 (355)
T TIGR00896 85 -PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-RVGLMTGLYSMALMGGAALAAAATVPL 145 (355)
T ss_pred -ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245556667889999988888777788777774 799999999998889988888776544
No 203
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.66 E-value=0.046 Score=57.12 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
.++....+.+++.+...+.....+.+.++++. +...+.. +..+.++|..+++.+.+++.+..||+..|.+.++
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~ 390 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG 390 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 44455566667777666666677777776432 3344444 5567789999999999999999999999988777
Q ss_pred HHHHHHHHHH
Q 010840 133 AMGISNMLFF 142 (499)
Q Consensus 133 ~m~l~~i~f~ 142 (499)
..++..++.+
T Consensus 391 ~~~i~~~~~~ 400 (420)
T PRK09528 391 IVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHH
Confidence 6665554433
No 204
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.25 Score=51.20 Aligned_cols=84 Identities=12% Similarity=0.040 Sum_probs=74.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
-+|.+=|++|++++++.++..++. .|.+.+...+++.|.-+-.-.|.....++.--|
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs-----------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfs 147 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFS-----------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFS 147 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhh-----------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcC
Confidence 456666999999999999988765 356667778899999999999999999999999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
++.||...|+|..+..+|..+.+.+..
T Consensus 148 r~eRG~~~siWn~shNiGGal~~~~~~ 174 (448)
T COG2271 148 RKERGTWWSIWNTSHNIGGALAPLVAL 174 (448)
T ss_pred ccccCceEEEehhhhhcccchHHHHHH
Confidence 999999999999999999999998883
No 205
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.59 E-value=0.58 Score=51.22 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=77.6
Q ss_pred hhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010840 270 TMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYA 349 (499)
Q Consensus 270 ~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~ 349 (499)
.++.++|+-+ ...|+...+.+..-+..|++.++---+.|| .-+.+|.++..+|+++.+-.+
T Consensus 69 ~I~~diG~~~-~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-----------~~~i~g~~l~vvG~Iv~atA~------- 129 (599)
T PF06609_consen 69 YINADIGGSD-NWSWFSTAWTLASAVSFPFVGRLSDLFGRR-----------YFFIIGSLLGVVGSIVCATAQ------- 129 (599)
T ss_pred HHHHhcCCCc-cchHHHHHHHHHHHHHHHhhHHHHHHhcch-----------HHHHHHHHHHHhHHHHhhcCC-------
Confidence 3456666532 234777777877778888877765444444 236677888888887766331
Q ss_pred hhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 350 ISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 350 ~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
|+.-++-..++.|+|--..... ...+.+..|.+.|....++.....-+....|+.+.+..
T Consensus 130 ----------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~ 189 (599)
T PF06609_consen 130 ----------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLF 189 (599)
T ss_pred ----------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHh
Confidence 2233566777877775555443 44578899999998887776665555555666666543
No 206
>PRK09952 shikimate transporter; Provisional
Probab=95.45 E-value=0.25 Score=52.02 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHH
Q 010840 296 ILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYC 375 (499)
Q Consensus 296 l~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~ 375 (499)
..|+-..+.-++..|+ ...+-+.+++++.+++.+..++....- .-+ . .+++.++..-+
T Consensus 76 ~~~~g~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~~~~~~~~~~-----~~~---------~-~~~~~l~~~R~ 133 (438)
T PRK09952 76 FRPLGGVVFGHFGDRL-------GRKRMLMLTVWMMGIATALIGLLPSFS-----TIG---------W-WAPVLLVTLRA 133 (438)
T ss_pred HHhhHHHHHHHHHHhh-------ccHHHHHHHHHHHHHHHHHHhcCCcHH-----HHH---------H-HHHHHHHHHHH
Confidence 3455444555566664 333456677777777766665542110 000 0 11224566778
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 376 LIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 376 l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+.|+++-...|....++.+..|++.||.+++......++|..++..+...+
T Consensus 134 l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l 184 (438)
T PRK09952 134 IQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLI 184 (438)
T ss_pred HHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987766554
No 207
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=95.34 E-value=0.75 Score=49.85 Aligned_cols=116 Identities=16% Similarity=0.195 Sum_probs=78.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840 283 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 362 (499)
Q Consensus 283 ~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~ 362 (499)
+..+....+..+++.|+-..+. .|+ +..+-+..+-++.++..+..++.... .
T Consensus 48 alv~~a~~LP~~Llsl~aG~la----Dr~-------drrrili~~~~~~~~~~~~L~~l~~~-----------------~ 99 (524)
T PF05977_consen 48 ALVQAASTLPILLLSLFAGALA----DRF-------DRRRILILSQLLRALVALLLAVLAFF-----------------G 99 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hcc-------cchHHHHHHHHHHHHHHHHHHHHHHh-----------------C
Confidence 3566777777777777765543 332 22222344444444443333333221 1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
. .++|.++..-++.|++..+..|.-.+.+-+..|++.-..+.++......++..+|+.+.+++-
T Consensus 100 ~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 100 L-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 1 567777888899999999999999999999999999888888888888888877777766543
No 208
>PRK15011 sugar efflux transporter B; Provisional
Probab=95.31 E-value=0.88 Score=47.02 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh--HHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK--SIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 444 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr--~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ 444 (499)
.++++....+.+..+....|.....+.+..|++-| +.+.+......++|..+++.+...+... -+|
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------~gw---- 172 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG--------FSF---- 172 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh--------cCh----
Confidence 44444444555555667788888888877766544 4566777778888888888887765421 134
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 010840 445 INTGRFDYLYWLLAVLSVINFCAFLYSAY 473 (499)
Q Consensus 445 ln~~~l~~~f~~la~l~~~~~~~~~~~~~ 473 (499)
...|++.+++.++..+..+...+
T Consensus 173 ------~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ------TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ------HHHHHHHHHHHHHHHHHHHhhcC
Confidence 23566666666665554444333
No 209
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.19 E-value=0.17 Score=50.78 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
-|..+.+..+++.+.|-.+..++.+.++....|++.++..+++.....++|..+|+.+.+.+.
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 457788899999999999999999999999999988999999999999999999999998654
No 210
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.96 E-value=0.39 Score=51.02 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccc
Q 010840 372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSV 429 (499)
Q Consensus 372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~ 429 (499)
-.-++.|++--+++........+..-+.-+++++|++......+..+++.+.+.....
T Consensus 393 ~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~ 450 (488)
T KOG2325|consen 393 SFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL 450 (488)
T ss_pred ehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence 3456777888888889999999999999999999999999999999999998876543
No 211
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=94.93 E-value=0.15 Score=53.26 Aligned_cols=71 Identities=18% Similarity=0.138 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 123 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~-~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~ 123 (499)
+.+++...+.++|.|..-+...++.+|..+.++-+ .++.+..++..+.++.++|..+++.+.+++.+..||
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556667788899988899999999987753211 112356788999999999999999999998776666
No 212
>PRK15075 citrate-proton symporter; Provisional
Probab=94.63 E-value=1.4 Score=46.25 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=68.0
Q ss_pred HHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHH
Q 010840 301 YSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIA 380 (499)
Q Consensus 301 ~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~ig 380 (499)
..+.-++.+|. ...+-+.+|.++.+++.+..++...... -.. ....+++..-++.|++
T Consensus 73 ~~~~G~l~Dr~-------Grr~~l~~~~~~~~~~~~l~~~~~~~~~--------------~~~-~~~~~l~~~R~l~G~~ 130 (434)
T PRK15075 73 AIVLGAYIDRV-------GRRKGLIVTLSIMASGTLLIAFVPGYAT--------------IGL-AAPLLVLLGRLLQGFS 130 (434)
T ss_pred HHHHHHHhhhh-------chHHHHHHHHHHHHHHHHHHHhCCcHHH--------------HHH-HHHHHHHHHHHHhhcc
Confidence 34444555654 3334567777777777766665421100 000 0012345556789999
Q ss_pred HHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 381 EVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 381 E~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+-...+....++.+..|++.|+..++++.....+|..+++.+...+
T Consensus 131 ~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred ccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888889999999999999999998887777776666665543
No 213
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.61 E-value=0.24 Score=51.10 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHH-HHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
.+.++..-.+-+++.|.+-+....++.++ ++++ +..+...|. .+..+|..+++.++|++.|++|+ ..|.+.
T Consensus 293 ~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~ 364 (382)
T TIGR00902 293 FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFM 364 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence 35566667788888888888888888765 4322 344455544 35679999999999999999996 667676
Q ss_pred HHHHHHHHHHHH
Q 010840 131 AIAMGISNMLFF 142 (499)
Q Consensus 131 ~~~m~l~~i~f~ 142 (499)
++..++++++..
T Consensus 365 ~~~~~~~~~~~~ 376 (382)
T TIGR00902 365 AIIAAAAFFLIP 376 (382)
T ss_pred HHHHHHHHHHHH
Confidence 666666655443
No 214
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.53 E-value=0.34 Score=51.45 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=94.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
+..+...+...+..|++...- +| + .+..+=+.+|.+++++|.++...++.. +
T Consensus 75 ~viaa~slg~~i~~liF~~Ws----~k-~-----~~~k~Pli~s~ii~~~g~llY~~l~~~------------------~ 126 (488)
T KOG2325|consen 75 LVIAASSLGHAIFSLIFGIWS----NK-T-----GSVKKPLIVSFLIAIIGNLLYLALAYV------------------P 126 (488)
T ss_pred HHHHHHHHHHHhcchhhcccc----cc-c-----CCcccCHHHHHHHHHHHHHHHHHHHhc------------------c
Confidence 344456777778888776631 11 1 122233779999999999988766652 2
Q ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCchhhHHHHhHH--HHHhHHHHHHHhhhhhhhccccCCCCCCCCCc
Q 010840 364 DLSAYWLLIQYCLIGIA-EVFCIVGLLEFLYEEAPDAMKSIGSAYA--ALAGGLGCFAASILNSIIKSVTGNPKKGQPNW 440 (499)
Q Consensus 364 ~~s~~wli~~~~l~~ig-E~~~~p~~~ef~~~~aP~~mr~~~~gl~--~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w 440 (499)
+-+.|+++..+++.|+| -.+..--.+.-..+..++++|+++.... -+...+|..++..+..+-++ +-.|
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~--------G~~i 198 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEK--------GFMI 198 (488)
T ss_pred cchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCC--------ceEE
Confidence 02578999999999999 6666666666666677888887766555 44455555555555444221 1224
Q ss_pred cc-ccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 441 LA-QNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 441 ~~-~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
++ ..+|..... =|+.+++.+++.++..+..|--.
T Consensus 199 ~~~~~~n~YTap--~w~m~i~~i~~~v~i~~~f~E~~ 233 (488)
T KOG2325|consen 199 LPGLIFNMYTAP--AWLMAILWIIYIVIILFFFKEVY 233 (488)
T ss_pred cCcceEEecchH--HHHHHHHHHHHHHHHHhheeecc
Confidence 44 244443332 24456666666666555555443
No 215
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=94.47 E-value=1.1 Score=48.15 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch--
Q 010840 322 QRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA-- 399 (499)
Q Consensus 322 ~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~-- 399 (499)
+-+.+|.++.+++.+..+..+ .+..+......+..+|--+..+....++.++-|++
T Consensus 77 r~iliG~il~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~ 134 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP 134 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc
Confidence 346788888877765443211 11112222334455665566676678888888875
Q ss_pred hhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 400 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 400 mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
.|+...++++....+|..+++.+...+... -+| ..-|...++.+++..+.++...|++.
T Consensus 135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~--------~Gw----------~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEE--------YSW----------AMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHHHHhh--------hCh----------HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 788899999998999999999988765421 123 23455555555666666655444443
No 216
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=94.36 E-value=0.45 Score=51.29 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=81.8
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840 283 TCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 362 (499)
Q Consensus 283 ~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~ 362 (499)
+++.+...+...+..++..++--.+.|| +-+.++.++..++.++.+..
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk-----------~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRK-----------KTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHHHHHHHHHHHHHHHh---------------------
Confidence 3666666666666666666554444443 33667777777777666654
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhh
Q 010840 363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASIL 422 (499)
Q Consensus 363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l 422 (499)
.++++++..-++.|+|=-+.+....-++.+.||++.||.+.++..+...+|..++-.+
T Consensus 140 --~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 140 --PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred --hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999999999999999999999999999999988444
No 217
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=94.23 E-value=0.86 Score=47.02 Aligned_cols=55 Identities=9% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+...++.+++.....|...+++.+..+++ +...|......++|..+++.+...+
T Consensus 102 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 102 AIVGGLYLGFVFSAGAGAIEAYIEKVSRNS--NFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHhhhhc--ccccchhhhhcccHHHHHHHHHhhh
Confidence 345567888888888888888877765543 3344555555566666666665543
No 218
>PRK09669 putative symporter YagG; Provisional
Probab=94.18 E-value=0.31 Score=51.39 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 123 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~-~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~ 123 (499)
.+.+++...+.++|.|..-+...++.+|..|.++.+ .++.....|..+.++.++|..+|+.+++++-+..||
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456677778899999999999999999998753322 112234578889999999999999999888666666
No 219
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=94.17 E-value=5.8 Score=42.24 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=62.5
Q ss_pred HHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHH
Q 010840 303 TFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEV 382 (499)
Q Consensus 303 i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~ 382 (499)
..-++..|+ .+.+-+.++.++.++..+..++... + .. .|.+.++...++.|++ .
T Consensus 89 p~G~l~Dr~-------G~R~v~~~~~ll~~i~~~~~~~a~~------------~-----~~-~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 89 PYSFMVPIF-------GGRRWTVFSTAILIIPCVWLGIAVQ------------N-----PN-TPFGIFIVIALLCGFA-G 142 (462)
T ss_pred HHHHHHHHh-------CChHHHHHHHHHHHHHHHHHHHHHc------------c-----cC-CCHHHHHHHHHHHHHH-H
Confidence 334556664 3444567777777777666554310 0 01 4577788889999998 5
Q ss_pred HHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHh
Q 010840 383 FCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS 420 (499)
Q Consensus 383 ~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~ 420 (499)
...+.+...+...-|++.||+++|++.....+|..++.
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~ 180 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ 180 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence 58888999999999999999999999544444444333
No 220
>PRK09848 glucuronide transporter; Provisional
Probab=93.98 E-value=0.31 Score=51.38 Aligned_cols=90 Identities=11% Similarity=0.091 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhh-hhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch-------
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW------- 123 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~-~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~------- 123 (499)
.+.+++++.+.++|.|...+...++.+|..|+++-+. +++...++..+-++..+|..+|+.+.+.+-+..||
T Consensus 319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~ 398 (448)
T PRK09848 319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQT 398 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC
Confidence 4556777888999999999999999998877543211 12235667788899999999999888876444444
Q ss_pred -------HHHH-HHHHHHHHHHHHHH
Q 010840 124 -------GSAF-GALAIAMGISNMLF 141 (499)
Q Consensus 124 -------~~~F-~i~~~~m~l~~i~f 141 (499)
+..+ .+|++.++++++++
T Consensus 399 ~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 399 PEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 45666666666654
No 221
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=93.90 E-value=2.4 Score=43.31 Aligned_cols=117 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
+++-+-+..++++.+++.++=.. -+.+-++..-++.+.|=....+..-+.+-+.-|
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~------------------------~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp 129 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSL------------------------GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP 129 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhc------------------------ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc
Confidence 46667777877776655433111 124556677889999999999999999999999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
++. +.+||+|..+.++|..+++.+...+... ..+| +....+| +.++++.+++++-...|++
T Consensus 130 k~~-~~mtglYs~sl~~~aaLaa~lavpla~~-------~~gW--------~~aL~~W--Al~allAl~~WlPq~~r~~ 190 (395)
T COG2807 130 KRV-GLMTGLYSTSLGAGAALAAALAVPLAQH-------SGGW--------RGALGFW--ALLALLALLIWLPQALREQ 190 (395)
T ss_pred cch-hhHHhHHHHHHHHHHHHHhhhhhHHHHh-------hccH--------HHHHHHH--HHHHHHHHHHHhhhccccc
Confidence 987 4899999999999999998887554321 1246 2222333 5666666777766654443
No 222
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=93.69 E-value=0.44 Score=49.07 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---
Q 010840 323 RVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDA--- 399 (499)
Q Consensus 323 ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~--- 399 (499)
-+.+|.++..+|.++..+.... ... ... .+...+.....++++|.-+.-|....|..+|-+++
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~-------~~~------~~~-~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP-------PSL------PSG-IQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS-------SSC-------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred hhhHHHHHHHHHHHHhHHHHhc-------chh------hhh-HHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 3678888888888886654320 000 011 34455667788999999999999999999999887
Q ss_pred hhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 400 MKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 400 mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
.|...-..|+....+|+.++..+...+.. +-+| ...|++.++.++++.++|+...++|+++
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~--------~~~~----------~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQ--------NYGW----------FLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHH--------CS-H----------HHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhcc--------ccch----------hhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 34455667788889999998877665542 1223 4578888888899999998888888876
No 223
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=93.54 E-value=7.6 Score=38.57 Aligned_cols=87 Identities=10% Similarity=0.275 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHH
Q 010840 373 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDY 452 (499)
Q Consensus 373 ~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~ 452 (499)
...++|++--+..-..--.+....||+.-|+.-|.-.....+|-.+.+.+..++. ++ |+++ -.++-
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~--d~-----~g~y-------~~le~ 423 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA--DG-----DGSY-------DNLEA 423 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee--cC-----CCch-------hhHHH
Confidence 4567777777777777778889999999999999888888888888777776643 21 2222 12566
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 010840 453 LYWLLAVLSVINFCAFLYSAY 473 (499)
Q Consensus 453 ~f~~la~l~~~~~~~~~~~~~ 473 (499)
||.....+++.+..+.+.+-|
T Consensus 424 ffl~~~~~aL~svgil~~~N~ 444 (459)
T KOG4686|consen 424 FFLIIGLMALTSVGILFYLNK 444 (459)
T ss_pred HHHHHHHHHHHHHHHHhheec
Confidence 777777777776665554433
No 224
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=93.36 E-value=1.2 Score=45.65 Aligned_cols=60 Identities=12% Similarity=0.015 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+.|.++...++.+++.....|.......+..+ .|+..+|......++|..+|+.+...+.
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--QIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--hccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 35555566677888887777776666555433 3455555555555667777776666543
No 225
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=93.25 E-value=3.9 Score=42.33 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=62.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
.+..+-+..|+.+.+++.....=.... -++-..+...++++.|=.+.-.++..++....|
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~~--------------------~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~ 134 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAASS--------------------KSYGFFLVALFILASGIGLLETAANPYVTLLGK 134 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhh--------------------hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence 455566888999888887665422110 234445667789999999999999999999999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
++-.+.=+++-....++|..+++.+++.
T Consensus 135 ~~~a~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 135 PESAAFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred chhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9777766666666666666666666544
No 226
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.18 E-value=5e-05 Score=80.10 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh---ccchHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 127 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~---~~g~~~~F 127 (499)
+...+.++-.+.++|.|+.-+....++.+..+++. |.....++..+.++|.+++..+...+.+ +.+|+..+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 45677778889999999999999998887775432 5667777778888998888766544432 34599888
Q ss_pred HHHHHHHHHH
Q 010840 128 GALAIAMGIS 137 (499)
Q Consensus 128 ~i~~~~m~l~ 137 (499)
.++.+..++.
T Consensus 175 ~~~~~~~l~~ 184 (451)
T PF00083_consen 175 IFGAIPSLLV 184 (451)
T ss_pred cccccccccc
Confidence 7766655443
No 227
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.91 E-value=4.6 Score=41.47 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 446 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln 446 (499)
.+|++....+.++......+....+..++.+++.++.+.+.......+|..+|+.+...+... -+|
T Consensus 97 ~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~--------~gw------ 162 (390)
T TIGR02718 97 AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK--------FGQ------ 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCH------
Confidence 455555556666777777777777888888888889888888888888999988665443211 124
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 010840 447 TGRFDYLYWLLAVLSVINFCAFLY 470 (499)
Q Consensus 447 ~~~l~~~f~~la~l~~~~~~~~~~ 470 (499)
..-|++.+++.++..+..+.
T Consensus 163 ----~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 163 ----RPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 23566677777665555433
No 228
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=92.80 E-value=2.3 Score=45.43 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
+...++..-++.|+..-+......=|+.+.||++.||.+..+.-+...+|..++..++.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l 173 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGL 173 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHcc
Confidence 35556778899999999999999999999999999999999999999999999877753
No 229
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=92.73 E-value=3.6 Score=36.98 Aligned_cols=63 Identities=10% Similarity=0.008 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.+.++|.-++.|+|+.+.....-.++.+.+.++.|+...|+++.....+...|+.+.-.+.
T Consensus 87 ~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 87 PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999999999998888888887765543
No 230
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=92.51 E-value=1.2 Score=47.73 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~i~ 130 (499)
.+.+++.-.++++..|...+...++.++..++++ ...+|..|-..--..+.+||++.+.+.+..| .+.+|+..
T Consensus 380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l 453 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFL 453 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3456666678999999999999999999998754 3679999999999999999999999988776 88999878
Q ss_pred HHHHHHHHHHHH
Q 010840 131 AIAMGISNMLFF 142 (499)
Q Consensus 131 ~~~m~l~~i~f~ 142 (499)
.+.++++++++.
T Consensus 454 ~~lf~~gl~ll~ 465 (477)
T PF11700_consen 454 LVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHHHh
Confidence 888888877664
No 231
>PF13347 MFS_2: MFS/sugar transport protein
Probab=92.31 E-value=0.84 Score=47.82 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (499)
Q Consensus 4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~ 83 (499)
+..+.+++.++.+++.+... .+.+.+++...+.++|.|...+...++.+|..|.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~ 346 (428)
T PF13347_consen 293 YIIGLLLAALGFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDY 346 (428)
T ss_pred hhhhHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhh
Confidence 45566777777776655421 2456788889999999999999999999999986
Q ss_pred CChhh-hhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840 84 RSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 123 (499)
Q Consensus 84 ~~~~~-~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~ 123 (499)
++-+. ++.....+..+-+...+|..++..+.+.+-+..||
T Consensus 347 ~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 347 DEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 43221 12245678888889999999999988877544444
No 232
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=90.91 E-value=6.4 Score=38.28 Aligned_cols=122 Identities=12% Similarity=0.054 Sum_probs=73.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
.|..-..+|.++..+|+......-.. ..++.+.|.+.....+.+.|..+..-..+--..+.=|+
T Consensus 64 gp~~~l~iG~~~~~~GY~~~~l~~~~----------------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 64 GPWVVLLIGAVLGFVGYGLLWLAVSG----------------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC----------------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 34444667777777777666544221 11113344444445566677777666666666677786
Q ss_pred hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
.||...|+--...|++..+=..+...+. ++| .+.|..+++....+..++....-|...
T Consensus 128 -~RG~vvgilk~~~GLSaai~t~i~~~~f--------------~~~-----~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 128 -SRGTVVGILKGFFGLSAAIFTQIYSAFF--------------GDD-----PSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred -ccCceehhhhHHHHhHHHHHHHHHHHHc--------------CCC-----hHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 6999999999888888887555443322 111 234667777776666555555555544
No 233
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=90.42 E-value=2.6 Score=44.62 Aligned_cols=125 Identities=12% Similarity=0.075 Sum_probs=70.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
++...|+..++++..+-+++....... +. +.. ...+..+..-++.|++..+...+.+.++...-|
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~~-----------~~---~~~-~~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~ 136 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVKV-----------QT---SET-GFFVTTMASVVIINSGMALLQGSLFGLAGVFPS 136 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheeee-----------cC---Ccc-hHHHHHHHHHHHHHhhhhhhcccchhhcccCCH
Confidence 577788999877655555554432110 00 011 234445566778899999999999999886666
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhh
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSA 472 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~ 472 (499)
+.+++.+. .+|++..+++++.-+.....+ |.. +...+- ..||.+-+++.+++.+.|..+.
T Consensus 137 ~~~~a~~~-----G~g~aGv~~s~~~ii~~a~~~-----~~~----~~~~~a-~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 137 TYSSAVMS-----GQGLAGVLTSLAMILVKASGN-----DSH----GLKKSA-LGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred HHHHHHHh-----cchhHHHHHHHHHHHHHHhcC-----Ccc----chhhhh-hhHHHHHHHHHHHHHHHHHHHh
Confidence 55554444 466776666655433221111 100 122222 2356666666777777776554
No 234
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=90.35 E-value=3.2 Score=44.62 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCccccc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQN 444 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ 444 (499)
-|+++++..-++.|++..-....+...+.+..+++.|+..+.+ ....-.+..++..+...+. ++|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~----------~~W---- 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT----------RDW---- 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH----------hhH----
Confidence 4577788888999999999999999999999999999999999 4445455555555544432 246
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 445 INTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 445 ln~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
.+++|..++.+++..+++++.
T Consensus 234 ------r~~~~~~~~~~~~~~~~~~l~ 254 (521)
T KOG0255|consen 234 ------RWLFWIISIPSGLFLLLWFLP 254 (521)
T ss_pred ------HHHHHHHHHHHHHHHHHHHcc
Confidence 356777777777666654433
No 235
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=89.69 E-value=4.1 Score=42.43 Aligned_cols=82 Identities=12% Similarity=0.042 Sum_probs=56.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 318 ASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 318 ~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
.+-..|+.+..+++++||++.++.+ ++++-+..-++.+++--+.-.+-+.+.... |
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~-----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt~~y-~ 141 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP-----------------------SVWVRLLGVVLASLSSGLGEVTFLSLTHFY-G 141 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc-----------------------chhHHHHHHHHHhhhhhhhHHHHHHHHHhc-C
Confidence 5677899999999999998876542 234445555666666656556666665433 3
Q ss_pred chhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 398 DAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
+ ...+.|...+|.|..+|+.......
T Consensus 142 ~----~~l~~wssGTG~aGl~Ga~~y~~lT 167 (402)
T PF02487_consen 142 K----SSLSAWSSGTGGAGLVGALYYLGLT 167 (402)
T ss_pred c----cccccccCCcChhhHHHHHHHHHHH
Confidence 2 3468888889999999888766543
No 236
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=89.01 E-value=13 Score=38.35 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHH-HHHHhhhhhhhccccCCCCCCC-CC------
Q 010840 368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLG-CFAASILNSIIKSVTGNPKKGQ-PN------ 439 (499)
Q Consensus 368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g-~~l~~~l~~~v~~~t~~~~~~~-~~------ 439 (499)
...+.+|.+.+..---.++++++|..+.||+...|++|.+-.--..+| +.-+.+...+++..|.++=... +.
T Consensus 370 il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv~~C~~~t~~~~c~~~ 449 (510)
T KOG3574|consen 370 ILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTVKQCVLATNKVTCITK 449 (510)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCceeeccccccceeeecc
Confidence 344568999999999999999999999999999999998866555544 3444444444444332100000 00
Q ss_pred cccc---cCccc---hhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 440 WLAQ---NINTG---RFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 440 w~~~---~ln~~---~l~~~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
-.++ ++... ..|-||..-.+..++..+.|.++.+|.++.
T Consensus 450 ~~~~~c~~l~gtc~~~~DGYyi~s~ici~ig~i~~~~~~~ki~~L 494 (510)
T KOG3574|consen 450 AFPQLCLALGGTCLIARDGYYITSIICIVIGFIWFGLLKPKIKYL 494 (510)
T ss_pred hHHHHHHHhcCEEEEEecceEEeeehhhhHHHHHHHHHHHHHHHH
Confidence 0000 01100 024477665566666677777777777765
No 237
>PRK10429 melibiose:sodium symporter; Provisional
Probab=88.88 E-value=2.7 Score=44.76 Aligned_cols=72 Identities=14% Similarity=0.015 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChh-hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccch
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 123 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~-~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~ 123 (499)
.+.+++...+.++|.|..-+...++.+|..|.++-+ .++....+|..+-++..+|..+|+.+.+++-+..||
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345666777788999998899999999998754211 111234478889899999999999999887655555
No 238
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=88.08 E-value=8.9 Score=40.44 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCchh
Q 010840 324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEE---APDAM 400 (499)
Q Consensus 324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~---aP~~m 400 (499)
+.+|.++.+++.+..+..... . .+........++.++|.++..+..-+...+. -|++
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~------------------~-~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~- 121 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS------------------E-SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES- 121 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc------------------c-chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-
Confidence 667777766655555543210 0 1222333344556666666655555444443 4666
Q ss_pred hHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 401 KSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 401 r~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
+|-.++..+....+|+.++..+++..
T Consensus 122 ~g~lqS~~~~~~~~G~lv~~~l~G~l 147 (433)
T PF03092_consen 122 RGDLQSFVWGVRSVGSLVGSLLSGPL 147 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 88899988888999999988877553
No 239
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=87.79 E-value=4.1 Score=42.52 Aligned_cols=83 Identities=11% Similarity=0.109 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHH-HHHHHHHHHHHHHHhhccc------hHHHHH
Q 010840 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYIQMEHG------WGSAFG 128 (499)
Q Consensus 56 ~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~i-NiG~~i~~~~~~~i~~~~g------~~~~F~ 128 (499)
.++..+=++..|.+-.....++.++.+++. |.+.=.+|.... -+|..+|..++|++.|++| |...|.
T Consensus 305 ~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~ 378 (400)
T PF03825_consen 305 LLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFL 378 (400)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 334445677777787888888887776543 344555555443 4899999999999988765 445566
Q ss_pred HHHHHHHHHHHHHHhc
Q 010840 129 ALAIAMGISNMLFFIG 144 (499)
Q Consensus 129 i~~~~m~l~~i~f~~g 144 (499)
++++..++..+.|.+.
T Consensus 379 v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 379 VFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6776666666666554
No 240
>PRK11462 putative transporter; Provisional
Probab=87.77 E-value=20 Score=38.01 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP-DAMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP-~~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
..|....|++..++-.+....-.++....++ ++.|+..++.......+|..+++.+..
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~ 167 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM 167 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999999 699999999999888888877766643
No 241
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=86.78 E-value=48 Score=35.45 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhH-HHHHHHhhhhhh
Q 010840 372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG-LGCFAASILNSI 425 (499)
Q Consensus 372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a-~g~~l~~~l~~~ 425 (499)
.|.++.-.++--..-..-|..|..-+++.|..+-+..=...+ +|-.+|+.+.+.
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~~~ 435 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQQG 435 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHHHH
Confidence 477888888888888999999999999999988877665443 666666665443
No 242
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=84.78 E-value=2.8 Score=41.53 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHH
Q 010840 57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIA 133 (499)
Q Consensus 57 ~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g---~~~~F~i~~~~ 133 (499)
+++.++++.......+.-|+++-..+|++ ...+|..-|-..|+|-.+.+++++.+.++-| |--.|.+....
T Consensus 357 ~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~ 430 (459)
T KOG4686|consen 357 TSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGL 430 (459)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHH
Confidence 35556666655555557777777776543 6788999999999999999999999977643 54556555555
Q ss_pred HHHHHH
Q 010840 134 MGISNM 139 (499)
Q Consensus 134 m~l~~i 139 (499)
|.+..+
T Consensus 431 ~aL~sv 436 (459)
T KOG4686|consen 431 MALTSV 436 (459)
T ss_pred HHHHHH
Confidence 554444
No 243
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=83.45 E-value=6.7 Score=40.45 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Q 010840 324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSI 403 (499)
Q Consensus 324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~ 403 (499)
+.+|.+..+++.+..+... +...++..=++.|+..--+++. -+.+.+.++++.|+.
T Consensus 101 ll~c~~~va~s~ll~~~S~-----------------------~F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l 156 (451)
T KOG2615|consen 101 LLACLIGVALSYLLWALSR-----------------------NFAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPL 156 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccc
Confidence 5567777677666555432 2223344445555555544443 467889999999999
Q ss_pred HHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840 404 GSAYAALAGGLGCFAASILNSIIKS 428 (499)
Q Consensus 404 ~~gl~~l~~a~g~~l~~~l~~~v~~ 428 (499)
.|+....+.++|..+|++++.....
T Consensus 157 ~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 157 GMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred eeeeeehhhhcchhhcchhhhHHHh
Confidence 9999999999999999999876543
No 244
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=82.92 E-value=0.32 Score=52.84 Aligned_cols=92 Identities=16% Similarity=0.248 Sum_probs=2.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhh-----------
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------- 119 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~----------- 119 (499)
-..+|++|-++.++|..-+-+ ++..-.||.-+++ +-.-+..++|.+-.+|..+|.++++..-+
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~t----LG~tYiDDnv~~~--~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYT----LGITYIDDNVSKK--NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCcc----ceeeeeccccccc--cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 356777888888887665544 4444444433221 13567788888888998888887765421
Q ss_pred ----------ccc-hHHHHHHHHHHHHHHHHHHHhccccc
Q 010840 120 ----------EHG-WGSAFGALAIAMGISNMLFFIGTPLY 148 (499)
Q Consensus 120 ----------~~g-~~~~F~i~~~~m~l~~i~f~~g~~~~ 148 (499)
.+| ||+||+++++..++..+-++..-|++
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 134 99999999888887777555443333
No 245
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=82.32 E-value=1.8 Score=46.73 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA 131 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~i~~ 131 (499)
+.+..--.++++..|.+-......+.|..+.++ ..++|.+......+++++|+-+++++.|..| |...|..++
T Consensus 389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g 462 (509)
T KOG2504|consen 389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG 462 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence 455555566777777777766667777777543 6789999999999999999999999988887 999999999
Q ss_pred HHHHHHHHHHHhcc
Q 010840 132 IAMGISNMLFFIGT 145 (499)
Q Consensus 132 ~~m~l~~i~f~~g~ 145 (499)
+.++++....+.-+
T Consensus 463 ~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 463 LCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHHHHHHHhH
Confidence 99999987665543
No 246
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=81.30 E-value=24 Score=36.81 Aligned_cols=156 Identities=14% Similarity=0.118 Sum_probs=86.4
Q ss_pred CeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcc
Q 010840 277 KLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 356 (499)
Q Consensus 277 g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~ 356 (499)
++...++....+..+.++.-..+ .-.+-++..|+ .+.+-..+++++..+-.+..++...
T Consensus 43 ~~~LS~~q~~ll~aiPil~Gall-Rl~~g~l~drf-------GgR~~~~~s~~l~~IP~~~~~~a~~------------- 101 (417)
T COG2223 43 DFGLSEGQKGLLVAIPILVGALL-RLPYGFLTDRF-------GGRKWTILSMLLLLIPCLGLAFAVT------------- 101 (417)
T ss_pred ccCCCHHHHHHHHHHHHHHhHHH-HHHHHhhhccc-------CchHHHHHHHHHHHHHHHHHHHHcc-------------
Confidence 35666766666666666555432 33334455553 3445566677777777777766532
Q ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCC
Q 010840 357 SFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKG 436 (499)
Q Consensus 357 ~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~ 436 (499)
. .|.|+++..=++.|++-. .+..++..+..-=|++.||.++|++- ...+|..+...+..++-..-.
T Consensus 102 -----~--~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g----- 167 (417)
T COG2223 102 -----Y--PSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG----- 167 (417)
T ss_pred -----C--CchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-----
Confidence 1 233444444445555432 34456667777889999999999998 555665555554444332110
Q ss_pred CCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840 437 QPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 477 (499)
Q Consensus 437 ~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~ 477 (499)
...| ..--++.....++..+++++..+....
T Consensus 168 ~~~w----------~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 168 FLAW----------RNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred hHHH----------HHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 0013 112233445666666667666665533
No 247
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=78.02 E-value=93 Score=32.50 Aligned_cols=62 Identities=16% Similarity=0.224 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
|+|..+...+..|+-.-..++....-+.++.|++.|-+.+|+-..+-++|..+++++.-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45555567788889888999999999999999999999999999999999999999876544
No 248
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=77.98 E-value=81 Score=33.66 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ 443 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~-~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~ 443 (499)
.+..|....|++++++--++...--+....+.++ +.|....+..+....+|+.+...+...+-..- .+
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~-----------g~ 178 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLF-----------GG 178 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CC
Confidence 4577888889999999999999888888888886 78999999999999999888777764433211 10
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSE 480 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~~ 480 (499)
+ .+..-|.....+++++..+.++++.+..|.|..
T Consensus 179 ~---~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~ 212 (467)
T COG2211 179 G---DKALGYQGTALVLGVIGVILLLFCFFNVKERVV 212 (467)
T ss_pred C---cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 0 012236666777888888888888888776654
No 249
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=77.12 E-value=42 Score=31.40 Aligned_cols=100 Identities=18% Similarity=0.054 Sum_probs=61.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840 286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365 (499)
Q Consensus 286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~ 365 (499)
.-.|.+...+..++..+..++..+|+ .+..++..+++-..++....+..-..........+ +.+.. .
T Consensus 105 lG~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-----~~~~~-~ 171 (205)
T PF01891_consen 105 LGANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-----DYPWM-A 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccHH-H
Confidence 34677777777777777777766653 23344555555555555555443322211111100 00111 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
......+.+.++++.|.++......+..+.-|+
T Consensus 172 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 172 LVQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445667889999999999999999999988886
No 250
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=72.73 E-value=5.8 Score=41.87 Aligned_cols=153 Identities=14% Similarity=0.122 Sum_probs=95.1
Q ss_pred ecCCcccchhHHHH---HHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcc
Q 010840 280 LPVTCMPVFPGLSI---FLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEF 356 (499)
Q Consensus 280 ip~~~l~~~n~i~i---iil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~ 356 (499)
.|+...+.+|...- ++.+.++.++ ..|++ ..+-++.-++++++|-++.+...
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~l----gD~~G-------RK~vYG~~liImIi~t~~~~~s~-------------- 135 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWL----GDKFG-------RKKVYGKELIIMIICSALSGLSV-------------- 135 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----Hhhhc-------chhhhhHHHHHHHHHHHHhccCC--------------
Confidence 68887777776653 3444444443 33322 12235555666666554332211
Q ss_pred cccCCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCC
Q 010840 357 SFLTAMPDLS-AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKK 435 (499)
Q Consensus 357 ~~~~~~~~~s-~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~ 435 (499)
. .+.+ .+ .+|+...=+++|+|=-==+|.+-....+.|-++-||..+|..+..+++|-..|+.+..++...-+++
T Consensus 136 ~--~~~~-~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~-- 210 (538)
T KOG0252|consen 136 G--TTSP-LGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKI-- 210 (538)
T ss_pred C--CCCC-cchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhcc--
Confidence 0 1122 22 4677777799999877778999999999999999999999999999999998888776655332211
Q ss_pred CCCCcccccCccchhHHHHHHHHHHHHHHHHH
Q 010840 436 GQPNWLAQNINTGRFDYLYWLLAVLSVINFCA 467 (499)
Q Consensus 436 ~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~ 467 (499)
+++.-...|+|..|=+.-+++++-.++
T Consensus 211 -----~~~~~~~~~ld~vWRl~~glg~vpa~~ 237 (538)
T KOG0252|consen 211 -----FNGPSTYPHLDGVWRIIFGLGAVPALL 237 (538)
T ss_pred -----CCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 111111137888886655555554443
No 251
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=70.00 E-value=1.1e+02 Score=32.90 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHhh
Q 010840 92 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 119 (499)
Q Consensus 92 ~~~~f~~~Y~~iNiG~~i~~~~~~~i~~ 119 (499)
-.++|..+..+-|+|.++|..++.++.+
T Consensus 178 AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 178 AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988876
No 252
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=68.58 E-value=1.1e+02 Score=31.99 Aligned_cols=86 Identities=16% Similarity=0.147 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCc
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNIN 446 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln 446 (499)
.+..+..-++.+++.....-..+-.+...-|+-.++.+.| ++++..+.+++.-+...+.. |.+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~G-----~a~aG~l~Sl~~i~tka~~~------------~~~ 179 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMSG-----QALAGTLTSLLRILTKAAFS------------DSR 179 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHhc-----chhHhHHHHHHHHHHHHhcC------------CCC
Confidence 3444566788899999999999999998888888887776 45555555444333222221 112
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 010840 447 TGRFDYLYWLLAVLSVINFCAFLY 470 (499)
Q Consensus 447 ~~~l~~~f~~la~l~~~~~~~~~~ 470 (499)
++- ..||.+-.++.+++.+.|..
T Consensus 180 ~sA-~~yF~~s~~~~llC~i~y~~ 202 (406)
T KOG1479|consen 180 TSA-LIYFITSTVILLLCFVLYLV 202 (406)
T ss_pred cee-ehhHHHHHHHHHHHHHHHHH
Confidence 222 23666666677777777773
No 253
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=67.57 E-value=73 Score=32.22 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhh-----hhhcCCcccccCCC
Q 010840 288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNY-----AISHGYEFSFLTAM 362 (499)
Q Consensus 288 ~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~-----~~~~g~~~~~~~~~ 362 (499)
.|.+.+.+..++..+.+++..+|+. ++...++..+++-..++...+++.-..-+.. .++.|.... .+.
T Consensus 108 aN~l~ma~~~~~v~y~iyr~~~~~~-----~~~~~~~~~~f~gg~l~i~~~al~~al~l~~~~~~~~~~~g~~~~--~~~ 180 (322)
T PRK07331 108 ANCFNMAFIMPFVGYYIYKFIKKWT-----KSKKGEYIGAFIGGYIGINVAALFAAIEFGLQPLLFKDASGLPLY--SPY 180 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccc--ccc
Confidence 4555555555666777777766642 2333445555555555555544432211100 011110000 011
Q ss_pred C-cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCchh
Q 010840 363 P-DLSAYWLLIQYCLI-GIAEVFCIVGLLEFLYEEAPDAM 400 (499)
Q Consensus 363 ~-~~s~~wli~~~~l~-~igE~~~~p~~~ef~~~~aP~~m 400 (499)
+ +.+..-+.+..+.+ ++.|-++......|+.+..|+-+
T Consensus 181 ~~~~~~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 181 PLSVTIPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 1 02333466677776 99999999999999999998865
No 254
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=67.10 E-value=1.5e+02 Score=31.74 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHH
Q 010840 290 GLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYW 369 (499)
Q Consensus 290 ~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~w 369 (499)
.+..++..|++..+--+..|| .++..-.+|.++-.+.+++. .||
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk--------~~L~~~~~~~~l~~~~~~~~----------------------------~~~ 115 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRK--------VVLLLPLFGTILPALCLLFQ----------------------------GYW 115 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhh--------hhHHHHHHHHHHhHHHHHHH----------------------------HHH
Confidence 456667777777765554444 34444445555444433332 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+. ..=+.-+-..+...+++++++.+.++-|+...|+...+.+.+..+++.+.+..
T Consensus 116 ~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~ 171 (463)
T KOG2816|consen 116 FFL-LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYL 171 (463)
T ss_pred Hhh-hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 433 11122244566778889999999999999999999998888888888887653
No 255
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=66.90 E-value=1.8e+02 Score=31.06 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=39.6
Q ss_pred HHHHHHHH----HHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 379 IAEVFCIV----GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 379 igE~~~~p----~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+|++-+. .--.|+.+....+.-....++..+...+|..+|+.+.....
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444 55688999999988889999999999999999998887654
No 256
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=66.56 E-value=1.9e+02 Score=31.11 Aligned_cols=54 Identities=19% Similarity=0.113 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHH----HHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcc
Q 010840 375 CLIGIAEVFCIVG----LLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 428 (499)
Q Consensus 375 ~l~~igE~~~~p~----~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~ 428 (499)
++.-++|+..+.. --.|+.+....+.-...-+++.+...+|..+|+.+...+.+
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677776553 46788888888888899999999999999999999887664
No 257
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=66.39 E-value=0.11 Score=54.58 Aligned_cols=61 Identities=28% Similarity=0.259 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
++++++..-++.|+|=-...+....++.+.+|++.|+.+.+++.....+|..++..+...+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4677777888999998889999999999999999999999999999999999988776443
No 258
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=66.36 E-value=1.9e+02 Score=31.04 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHh-HHHHHHHhhh
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAG-GLGCFAASIL 422 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~-a~g~~l~~~l 422 (499)
.+-...|.++.=++--..+-..=|.++-...+.+|...-|..=... -+|--+|+.+
T Consensus 396 v~iG~iqnvlsK~~KYslfD~tKEma~ipldpe~r~kgKAa~D~i~~k~GKSiGSli 452 (509)
T COG3202 396 VYIGGIQNVLSKITKYSLFDATKEMAYIPLDPEYRTKGKAAVDVIGGKLGKSIGSLI 452 (509)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHcCcCCHhHHhhccchhhhhhhcccccHHHHH
Confidence 3444566677777777777777888888888888888777665433 3444454444
No 259
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=65.29 E-value=1.4e+02 Score=29.04 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccC
Q 010840 2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 81 (499)
Q Consensus 2 ~~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~ 81 (499)
+++.+|++..++|+.++.++.. .... ..+.+.+++-+.+.+.|.+.+....-.-..+.|
T Consensus 67 ~~l~iG~~~~~~GY~~~~l~~~-~~i~--------------------~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NF 125 (250)
T PF06813_consen 67 VVLLIGAVLGFVGYGLLWLAVS-GRIP--------------------SLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNF 125 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CccC--------------------ccchHHHHHHHHHHcccHHHhhhHHHHHHHHhC
Confidence 4788999999999999998754 1111 124555655555666666665554444455788
Q ss_pred CC
Q 010840 82 DE 83 (499)
Q Consensus 82 ~~ 83 (499)
++
T Consensus 126 P~ 127 (250)
T PF06813_consen 126 PR 127 (250)
T ss_pred cc
Confidence 65
No 260
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=63.44 E-value=15 Score=38.73 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCCC
Q 010840 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (499)
Q Consensus 4 i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~ 83 (499)
|..++...++++.++.-.+.+ .+. .|++. . ++.+.....++.+|..+.=+.+-..+....++.+|...+
T Consensus 105 I~~~s~~i~~~l~Lig~aaDi---g~~--lgd~~----~--~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~ 173 (498)
T KOG0637|consen 105 ILAGSLLIAVSLFLIGYAADI---GLL--LGDNE----R--KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARG 173 (498)
T ss_pred HHHhhHHHHHHHhhhhhHhhh---hHH--hcCCc----c--cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccC
Confidence 456667777777766655442 111 12111 0 123456788899999999999999999999999999986
Q ss_pred CChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh
Q 010840 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 118 (499)
Q Consensus 84 ~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~ 118 (499)
++.+ +++.++|=+.+-+|..+|..+.+|..
T Consensus 174 d~~~-----~~Ans~f~~f~avGnvLGY~~g~y~~ 203 (498)
T KOG0637|consen 174 DAKK-----TRANSVFSFFMAVGNVLGYALGSYLG 203 (498)
T ss_pred hhhh-----hccchhHHHHHHhcceeeeecccccC
Confidence 5532 22888998899999999988877764
No 261
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=62.56 E-value=20 Score=38.15 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=87.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
...+-+..|-++.++|-++++..+. .+...+....+++++|--+.-|....+..++=|+
T Consensus 90 G~~~tI~lGail~~iGh~~L~~~~~---------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~ 148 (498)
T COG3104 90 GTRRTIVLGAILMAIGHLVLAISSV---------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK 148 (498)
T ss_pred chhHHHHHHHHHHHHHHHHHhcccc---------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCC
Confidence 3445588999999999888875420 1233455566777788888888887777777665
Q ss_pred hh--hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 399 AM--KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 399 ~m--r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
.- |-...++++....+|+++++.+...+.. .-+| +.-|.+-++-+.+.++.|++..|+++
T Consensus 149 ~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~--------~~g~----------~~gF~~aavGm~~gl~~f~~~~r~~~ 210 (498)
T COG3104 149 DDPRRDGGFTLFYMGINIGSLIAPIITGLLAI--------NYGW----------HVGFGLAAVGMIIGLVIFLLGRRHVK 210 (498)
T ss_pred CCcccCCCccEEEEEeehHHHHHHHHHHHHHH--------hhCH----------HHHHHHHHHHHHHHHHHHHHccchhc
Confidence 22 4556777788888999999998776541 0112 34677777788888889988888887
Q ss_pred ccccccc
Q 010840 477 YRSEQKH 483 (499)
Q Consensus 477 ~~~~~~~ 483 (499)
.....++
T Consensus 211 ~~~~~~~ 217 (498)
T COG3104 211 GIGGVPD 217 (498)
T ss_pred CCCCCCC
Confidence 6543333
No 262
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=57.08 E-value=1.3e+02 Score=31.51 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=19.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHh
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLC 308 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~ 308 (499)
.+.+.|++.-++.+|++..+-.++.
T Consensus 47 ~i~s~~~~~~l~~qp~~G~i~Dklg 71 (412)
T PF01306_consen 47 IIFSAGSLFALLAQPVYGFISDKLG 71 (412)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhHHHhcchhh
Confidence 5677889999999999877655443
No 263
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=56.98 E-value=51 Score=34.98 Aligned_cols=165 Identities=16% Similarity=0.088 Sum_probs=95.2
Q ss_pred HHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---cccchhHHHHHHHHHHHHHHHHHHhhhhcCC
Q 010840 238 KTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---CMPVFPGLSIFLILSLYYSTFVPLCRRITGH 314 (499)
Q Consensus 238 k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~ 314 (499)
++++++.-+....-+.|....+..|-+.++. ++|-. ..+...|++=++.+|+....--+.-.|++++
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l----------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL----------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc----------CCCcccccccccccccccceecccccccccccccccccc
Confidence 4455666666677788887766655554332 34444 3455567777888888776655544454332
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010840 315 PRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYE 394 (499)
Q Consensus 315 ~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~ 394 (499)
+|. |.+|.++.++++.........-.... +++..+.+.-.+...+.-+.++-++-=++.-..=++..+
T Consensus 102 ----RPf--I~~~s~~i~~~l~Lig~aaDig~~lg------d~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~D 169 (498)
T KOG0637|consen 102 ----RPF--ILAGSLLIAVSLFLIGYAADIGLLLG------DNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLAD 169 (498)
T ss_pred ----cch--HHHhhHHHHHHHhhhhhHhhhhHHhc------CCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHH
Confidence 121 77777777777776555433211111 221111111334445556666666653444444455555
Q ss_pred hc-CchhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 395 EA-PDAMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 395 ~a-P~~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
.+ |+..+-...+.+.+..++|+.+|-.+..
T Consensus 170 l~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 170 LARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 55 4444444999999999999999877654
No 264
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=53.78 E-value=54 Score=34.40 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAI 132 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~~~ 132 (499)
-+++.-.++++..|+..+...+..++..+++++ .++|..|-..--.++++||.+.+.+-+- .+-+.++..-.+
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKE------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccc------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 344444689999999999999999999987543 5799999999899999999888876543 346777766666
Q ss_pred HHHHHHHHHH
Q 010840 133 AMGISNMLFF 142 (499)
Q Consensus 133 ~m~l~~i~f~ 142 (499)
.+.+++++++
T Consensus 417 ll~iGl~~L~ 426 (438)
T COG2270 417 LLLIGLLLLL 426 (438)
T ss_pred HHHhhHhhEE
Confidence 7777776554
No 265
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=53.75 E-value=29 Score=36.96 Aligned_cols=68 Identities=13% Similarity=-0.070 Sum_probs=47.9
Q ss_pred HHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-----hHHHHHHHHH
Q 010840 59 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-----WGSAFGALAI 132 (499)
Q Consensus 59 L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-----~~~~F~i~~~ 132 (499)
..+..++.|..-.....+..+.-+++. +...|.++....|+|..+++.+++++.+..| |+..+....+
T Consensus 358 ~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 358 SIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILG 430 (468)
T ss_pred hHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHH
Confidence 345555555555555666666655433 4789999999999999999999999988877 5555543333
No 266
>PRK08319 cobalt transport protein CbiM; Validated
Probab=51.96 E-value=1.9e+02 Score=27.58 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhH
Q 010840 371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKS 402 (499)
Q Consensus 371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~ 402 (499)
.++++.++++|.++......+..+.-|+-.+.
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~t 214 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLVK 214 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHhh
Confidence 45667899999999999999999999997753
No 267
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=49.16 E-value=3.1e+02 Score=28.95 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010840 326 IGLAVSILSVIWAGIFERY 344 (499)
Q Consensus 326 iG~~l~~l~~~~~a~~e~~ 344 (499)
-|+++.++.|+...+.|..
T Consensus 300 YgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999975
No 268
>PLN02351 cytochromes b561 family protein
Probab=48.48 E-value=2.6e+02 Score=26.99 Aligned_cols=96 Identities=9% Similarity=0.027 Sum_probs=50.0
Q ss_pred HHHHhhcCchhhHHHH------hHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHH
Q 010840 390 EFLYEEAPDAMKSIGS------AYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVI 463 (499)
Q Consensus 390 ef~~~~aP~~mr~~~~------gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~ 463 (499)
.|....+|+..|+.++ |+.-...+++..+-|+.=...-... +++ ..+.--++.+.++ ..+..+.+.
T Consensus 141 ~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~------~~~-y~~~~~Ea~lvN~-~Glliv~fG 212 (242)
T PLN02351 141 SFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQT------KRN-VSKHGSESMVVNG-LGLGLALLS 212 (242)
T ss_pred HHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CCc-cccCCchhhhHHH-HHHHHHHHH
Confidence 3667778888887754 4444455555555444433221100 111 1111112233333 334455555
Q ss_pred HHHHHHHhhcccccccccccCCchhhhhccccC
Q 010840 464 NFCAFLYSAYRYKYRSEQKHGNDYEVMENKLYD 496 (499)
Q Consensus 464 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 496 (499)
.++++....+.||+.+++ ..|...|++|++
T Consensus 213 ~~Vv~~~~~p~~kr~~~~---~~~~~~~~~~~~ 242 (242)
T PLN02351 213 GIVILAAVLPKYQSHSSK---LVYSSQDKCLSS 242 (242)
T ss_pred HHHHHhhcCccccCCCcc---CCccchhhhhcC
Confidence 677888888888764332 666667777753
No 269
>PRK11715 inner membrane protein; Provisional
Probab=47.71 E-value=3.1e+02 Score=29.03 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840 324 VGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEF 391 (499)
Q Consensus 324 i~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef 391 (499)
+=-|+++.++.|+...+.|...+ .+ +++ .||.+.|++-++.+-..+++
T Consensus 304 ~KYgiLFI~LTF~~fFlfE~~~~---------------~~-iHp----iQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFELLKK---------------LR-IHP----VQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HhHHHHHHHHHHHHHHHHHHhcC---------------ce-ecH----HHHHHHHHHHHHHHHHHHHH
Confidence 33588899999999999997421 12 332 36666666666655555544
No 270
>PF14007 YtpI: YtpI-like protein
Probab=47.11 E-value=69 Score=25.81 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=42.7
Q ss_pred ccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 010840 79 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 153 (499)
Q Consensus 79 dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p 153 (499)
.++...+|.||. +.-==..+.+|.++.....--.-- .+=.+.+.++++.+++++...+.|.|.|+|..|
T Consensus 18 k~~Rs~~p~~k~-----~~~aka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 18 KYFRSKDPMEKK-----WYSAKANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHhhcCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 455556665432 111223456777765433222111 233577889999999999999999998887755
No 271
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=46.93 E-value=76 Score=24.71 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=37.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccc
Q 010840 93 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 149 (499)
Q Consensus 93 ~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~ 149 (499)
+..-.++...+-+++++| .+.||+.++ ++..+.+-+++.++++++.+=-.+.|.
T Consensus 7 ~~ae~l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 7 RLAEKLMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 345667777888888887 456777664 467777777778888777765555543
No 272
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.60 E-value=3.4e+02 Score=27.75 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCC---CCCCCC-CcccccCccc
Q 010840 373 QYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGN---PKKGQP-NWLAQNINTG 448 (499)
Q Consensus 373 ~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~---~~~~~~-~w~~~~ln~~ 448 (499)
--+.+++.+...+++-+-|..+.=|.-++++..| .+++..+=.++. +++- ++. +.++-+ ..+|.+..
T Consensus 118 L~F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG-----~GLSaLlPslla-LaQG-tg~~~C~~n~t~~r~fP~rFs-- 188 (439)
T KOG4255|consen 118 LLFGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVG-----MGLSALLPSLLA-LAQG-TGRLECDLNGTPGRPFPPRFS-- 188 (439)
T ss_pred HHHHHHHHHhhccchhhhhhhhCChHHHHHHHHh-----ccHHHHHHHHHH-HHcc-CCceeecCCCCCCCCCCCCcc--
Confidence 3467899999999999999998888877765433 455555544332 2221 000 001101 11332211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 449 RFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 449 ~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
-..|||.+.+++..++..|..+.|--.
T Consensus 189 -~s~FFl~l~~~~~~alaAF~vL~r~~~ 215 (439)
T KOG4255|consen 189 -VSTFFLALFAFTCAALAAFFVLYRLGA 215 (439)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 234888888888888887777766543
No 273
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=44.97 E-value=2.8e+02 Score=26.26 Aligned_cols=101 Identities=13% Similarity=0.070 Sum_probs=55.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcc
Q 010840 286 PVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDL 365 (499)
Q Consensus 286 ~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~ 365 (499)
.-.|.+...+..++..+.+++..+|.. . +....-+..|++-..++.+..++ |.- .+ .+ ... .+.. .
T Consensus 108 LG~N~l~m~~~~~~~~~~~~~~~~~~~-l---~~~v~~f~~gf~~~~l~~~~~~~-~l~---l~--~~--~~~-~~~~-~ 173 (214)
T TIGR00123 108 LGANGFSMGVIGPFVGWIVYKLACRAG-L---RRDVAVFLAAMLGDLATYVVTSV-QLA---LA--FP--IPH-AGFT-G 173 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-c---chHHHHHHHHHHHHHHHHHHHHH-HHH---Hh--CC--Ccc-cchH-H
Confidence 345677777777778888888877631 1 11222233333333333222222 111 00 00 000 0000 1
Q ss_pred h----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 010840 366 S----AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM 400 (499)
Q Consensus 366 s----~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m 400 (499)
+ .....+.++.+++.|-++......|..+..|+-.
T Consensus 174 ~~~~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 174 SVVKFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 1 3344456678899999999999999999999854
No 274
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=44.53 E-value=4e+02 Score=27.99 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
-+++|+-..-++.|++-.. -+.-++++|+..|++.=-.+++.--.+.-+|..+|++++++.-
T Consensus 92 ~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 92 TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666443 5667789999999987777777766677777777777777644
No 275
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=43.83 E-value=65 Score=34.31 Aligned_cols=74 Identities=14% Similarity=0.132 Sum_probs=52.2
Q ss_pred hhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccc
Q 010840 73 VSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLY 148 (499)
Q Consensus 73 ~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~ 148 (499)
+.++.+..|-+.++..-..-+..-..-+.+-|+|.++|.+.-||++|.+|-.-.++...+.|+++-+ ..+-+..
T Consensus 63 Vt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~--~~~~s~~ 136 (538)
T KOG0252|consen 63 VTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSA--LSGLSVG 136 (538)
T ss_pred HHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHH--HhccCCC
Confidence 3445556665544211111233445566788999999999999999999999999999999999887 4444443
No 276
>PRK06265 cobalt transport protein CbiM; Validated
Probab=41.95 E-value=2.9e+02 Score=25.68 Aligned_cols=95 Identities=19% Similarity=0.135 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchH
Q 010840 288 FPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA 367 (499)
Q Consensus 288 ~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~ 367 (499)
.|.+...+-.++-..+.++..||. + ..+...|++-..++....++.-.-.+-.... .+ ...
T Consensus 102 ~N~l~m~~p~~~~~~~~~~~~~~~------~--~~~~~~~f~~~~l~v~~~~l~~~~~l~l~~~----------~~-~~~ 162 (199)
T PRK06265 102 VNTLNMALPAVLAGYLFRKLLRRT------P--PPRGLAAFLAGALAVFLAALLCALELALSGG----------FP-FVP 162 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHccc----------cc-HHH
Confidence 344444444445555555554442 2 2556677777777766655543221111100 01 111
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhh
Q 010840 368 Y--WLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 368 ~--wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
. -+++.++.+++.|.++......+..+.-|+-.+
T Consensus 163 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 163 AAKLLGLAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 1 122445667777999999999999999988654
No 277
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=41.66 E-value=3.2e+02 Score=26.13 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCchhh
Q 010840 366 SAYWLLIQYCLI-GIAEVFCIVGLLEFLYEEAPDAMK 401 (499)
Q Consensus 366 s~~wli~~~~l~-~igE~~~~p~~~ef~~~~aP~~mr 401 (499)
+.--+++..+.+ ++.|-++......|+.+..|+.+-
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 345567777887 999999999999999998666543
No 278
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=41.09 E-value=87 Score=29.21 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHH-HHHHHHHHHHHHHHHHhhc--cchHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQME--HGWGSAFG 128 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiG~~i~~~~~~~i~~~--~g~~~~F~ 128 (499)
...+.+.-.+.+++.|...|...++..|.+++ . ..+...+.+... ..++|..+++.+.+++... .+|+..|.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34445555557888888999999999999876 2 125666777777 5778888888776666543 57777555
Q ss_pred HHHHH
Q 010840 129 ALAIA 133 (499)
Q Consensus 129 i~~~~ 133 (499)
+....
T Consensus 169 ~~~~~ 173 (338)
T COG0477 169 LAALL 173 (338)
T ss_pred HHHHH
Confidence 44443
No 279
>PF15050 SCIMP: SCIMP protein
Probab=39.36 E-value=19 Score=30.41 Aligned_cols=9 Identities=44% Similarity=0.748 Sum_probs=5.6
Q ss_pred HHHHHHHHH
Q 010840 451 DYLYWLLAV 459 (499)
Q Consensus 451 ~~~f~~la~ 459 (499)
++||.++|+
T Consensus 6 ~nFWiiLAV 14 (133)
T PF15050_consen 6 DNFWIILAV 14 (133)
T ss_pred hchHHHHHH
Confidence 347776665
No 280
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=38.89 E-value=4.1e+02 Score=26.53 Aligned_cols=43 Identities=14% Similarity=0.240 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhH
Q 010840 371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGG 413 (499)
Q Consensus 371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a 413 (499)
+..+.++-..--+..|..+-+-.+.-|+..|+..|..+-.-..
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvPLn 390 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVPLN 390 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheechhh
Confidence 4456666666667788888999999999999999987766443
No 281
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=38.41 E-value=4.6e+02 Score=26.93 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCC-hhhhhhhhhhHhHHHHHHH-HHHHHHHHHHHHHhhccch--HH
Q 010840 50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHLDRFFNFFYLSVT-VGAIVAFTLVVYIQMEHGW--GS 125 (499)
Q Consensus 50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~-~~~~~~~~~~f~~~Y~~iN-iG~~i~~~~~~~i~~~~g~--~~ 125 (499)
.+...+++|=++-++++...-.+-.+-...+.++++ |+| ....-|..--+..| +-++.+.+++-++.+..+. ..
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~--~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~va 196 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE--WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVA 196 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcc
Confidence 346688888889999998888887775554444433 222 23444544332233 4455566666666666554 67
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010840 126 AFGALAIAMGISNMLFF 142 (499)
Q Consensus 126 ~F~i~~~~m~l~~i~f~ 142 (499)
.|..+.+..+++.+...
T Consensus 197 PF~~a~~~l~~~~~~I~ 213 (354)
T PF05631_consen 197 PFDAAIVLLAVAAVLIL 213 (354)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 78888887777766443
No 282
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.32 E-value=2.6e+02 Score=29.86 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhcccc
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 430 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t 430 (499)
+-+.....=.++|+|-.+...+.-++..+.+.++-+....|+.+.....+-++|+.+.-.+...+
T Consensus 101 N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~ 165 (461)
T KOG3098|consen 101 NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFS 165 (461)
T ss_pred chHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEec
Confidence 34566667799999999999999999999999999999999999999999999988776655443
No 283
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=38.31 E-value=10 Score=37.88 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHH
Q 010840 375 CLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLY 454 (499)
Q Consensus 375 ~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f 454 (499)
++.+++-.+...+.+.++...-|+.+++.+.| +|++..+.+++.- +.. +..++.+++-. .||
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~a~~~G-----q~~aGv~~s~l~i-i~~-----------~~~~~~~~~a~-~yF 66 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQAVMIG-----QGLAGVIVSLLRI-ITK-----------ASGSDVKTSAF-IYF 66 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHHHHHhh-----ccHHHHHHHHHHH-HHH-----------Hhhhccchhhh-hHH
Confidence 45667777777888888887777666665554 5555555443322 222 12222222222 255
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 010840 455 WLLAVLSVINFCAFLYSAYR 474 (499)
Q Consensus 455 ~~la~l~~~~~~~~~~~~~~ 474 (499)
.+-..+.++..+.|..+.|.
T Consensus 67 ~~a~~i~i~~~~~~~~l~~~ 86 (309)
T PF01733_consen 67 IIAVLIVILCIILYFILPRS 86 (309)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 54555556666666655543
No 284
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=38.24 E-value=2.3e+02 Score=29.64 Aligned_cols=151 Identities=14% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchH--
Q 010840 290 GLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSA-- 367 (499)
Q Consensus 290 ~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~-- 367 (499)
-..=++..|++|.+..+-.-| .+.+=.+....+|.++..+|..+ +.+..++ ...|+++.
T Consensus 77 ~sLKllWaPiVDs~y~k~~Gr----rksWvvp~q~llG~~mllLs~~v-------------~~~~g~n--g~~p~v~~lt 137 (510)
T KOG3574|consen 77 FSLKLLWAPIVDSVYSKRFGR----RKSWVVPCQYLLGLFMLLLSYLV-------------DRGLGGN--GGLPNVVALT 137 (510)
T ss_pred HHHHHHHHhhhHHHHHHhhcc----ccceeeehHHHHHHHHHHHhhCC-------------CcccccC--CCCcchHHHH
Confidence 345578899999876442222 22355666788888876655332 1122111 12232333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc-cCc
Q 010840 368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NIN 446 (499)
Q Consensus 368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~-~ln 446 (499)
||+.+.-++-+.=++-+-.-.+.+ ++|+ --|-+..+.......|.++|..+.-..+. + .. ...++.+ ..|
T Consensus 138 ~~f~LLnflaAtQDIAVDgwALtm---Ls~e-~lgyaST~q~Vg~~~GyfL~~~ifLaL~s--~--dF-~N~y~rs~P~~ 208 (510)
T KOG3574|consen 138 LLFLLLNFLAATQDIAVDGWALTM---LSRE-NLGYASTCQSVGQTAGYFLGNVVFLALES--P--DF-CNTYLRSIPLD 208 (510)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHh---cCHh-hcCchhHHHHHHHhhhHHhhcceeeEecC--h--hh-hhHHHhcCcCc
Confidence 344444444444444433333222 2333 34555666666677778877665433221 0 00 0001110 234
Q ss_pred cch--hHHHHHHHHHHHHHHHHHH
Q 010840 447 TGR--FDYLYWLLAVLSVINFCAF 468 (499)
Q Consensus 447 ~~~--l~~~f~~la~l~~~~~~~~ 468 (499)
++- +.-|+|+-+.+.++...+-
T Consensus 209 ~g~ItL~gy~~fwg~~~~vat~Lv 232 (510)
T KOG3574|consen 209 QGFITLAGYLWFWGALFIVATTLV 232 (510)
T ss_pred cceEEhhHHHHHHHHHHHHHHHHH
Confidence 442 4446666677666665543
No 285
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=37.91 E-value=4.5e+02 Score=26.72 Aligned_cols=24 Identities=25% Similarity=0.366 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 010840 453 LYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 453 ~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
.|.+--++.++..++|....++.+
T Consensus 288 ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 288 LYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHHHHhheEEccCCccc
Confidence 454433444555555555555443
No 286
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=36.84 E-value=5.7e+02 Score=27.57 Aligned_cols=53 Identities=13% Similarity=0.057 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 375 CLIGIAEVFCIVGLL----EFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 375 ~l~~igE~~~~p~~~----ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
++.-.+|+.-+.... .|+.+..-.+.-....+++.+...++.++++.+.....
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444567776665544 77788888888889999999999999999998876654
No 287
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=35.06 E-value=1.2e+02 Score=30.18 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
..-++|..++-...|.+-|++.-+- .||-+++. |+...|||-.-.|+=.-++....--=....+-+..|.+|.+
T Consensus 345 ~~s~i~F~~~E~cvGlfwPSimkmR-sqyIPEea-----rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~ 418 (454)
T KOG4332|consen 345 SESLIGFCLFEACVGLFWPSIMKMR-SQYIPEEA-----RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSA 418 (454)
T ss_pred hHHHHHHHHHHHHHhhcchHHHHHH-HhhCCHHH-----HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHH
Confidence 3447788899999999999987654 56654332 58899999887775433221110000112355678999999
Q ss_pred HHHHHHH
Q 010840 133 AMGISNM 139 (499)
Q Consensus 133 ~m~l~~i 139 (499)
.+.++.+
T Consensus 419 ~~~~a~i 425 (454)
T KOG4332|consen 419 FLFVASI 425 (454)
T ss_pred HHHHHHH
Confidence 9888755
No 288
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.37 E-value=1.4e+02 Score=24.24 Aligned_cols=52 Identities=23% Similarity=0.309 Sum_probs=31.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhcccccc
Q 010840 95 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 149 (499)
Q Consensus 95 ~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~ 149 (499)
+=.|+-..+.+|+++|.+ .|+.++..+|.+ | +-+++.++++++-+=-.+.|+
T Consensus 24 aEr~~q~ilti~aiVg~i-~Gf~~Qqls~tv-y-~vg~~~v~t~li~LPpwP~y~ 75 (101)
T KOG4112|consen 24 AERFQQLILTIGAIVGFI-YGFAQQQLSVTV-Y-IVGAGFVFTLLITLPPWPWYR 75 (101)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-H-HHHHHHHHHHHhcCCCchhhh
Confidence 444667788999999855 466666777633 3 444555556655554444444
No 289
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=32.24 E-value=60 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840 451 DYLYWLLAVLSVINFCAFLYSAYRYKY 477 (499)
Q Consensus 451 ~~~f~~la~l~~~~~~~~~~~~~~y~~ 477 (499)
..-+.++.+++.+.+++|++-..|.++
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455666666666666655555544
No 290
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.94 E-value=98 Score=31.38 Aligned_cols=33 Identities=33% Similarity=0.346 Sum_probs=25.6
Q ss_pred HHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 391 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 391 f~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
-.+-+=|..|| .|+|+++.+.|++++.+++..+
T Consensus 205 vLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 205 VLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred HhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 34567788888 7899999988888887776543
No 291
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=31.79 E-value=3.4e+02 Score=29.42 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcch----H
Q 010840 292 SIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLS----A 367 (499)
Q Consensus 292 ~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s----~ 367 (499)
.=++..|++|.++.|-.-| ++-+=.+.+..+|+++..+|.-+. +...-+..++ ...++++...++++ .
T Consensus 51 lKlLWaPiVDs~y~~~~GR----RKSWiiP~Q~l~g~~m~~l~~~i~---~~~~~~~~~d-~~~~~~~~~~~~~~i~~Lt 122 (544)
T PF13000_consen 51 LKLLWAPIVDSVYSKRIGR----RKSWIIPIQYLSGILMLYLSYNIS---QWLLFDGVDD-ALLGQGESTVNNITIKFLT 122 (544)
T ss_pred HHHhhhhhhhhhcccccCC----cchhhhHHHHHHHHHHHHHHhccc---hhhcccccch-hhhcCCCCcccccchhHHH
Confidence 4578899999987653322 122556677888887766665441 1100000000 01111111111133 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 368 YWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 368 ~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
++....+++.+-=++-+--=.+... + ++.+|.+..+.......|.++|-.+....+
T Consensus 123 ~~F~~L~fl~ATQDIAVDGWALT~L---s-~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 123 WFFFILVFLCATQDIAVDGWALTML---S-PENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHHHHHHHccCCceeehhhhhhc---C-hhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 2332334444433433333333332 3 344677777788888888888776655443
No 292
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.53 E-value=56 Score=28.00 Aligned_cols=25 Identities=12% Similarity=-0.067 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Q 010840 453 LYWLLAVLSVINFCAFLYSAYRYKY 477 (499)
Q Consensus 453 ~f~~la~l~~~~~~~~~~~~~~y~~ 477 (499)
.|.++|++..+.+++++++.|+.|+
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444433333444444333333
No 293
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=30.33 E-value=4.3e+02 Score=24.25 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhhHHHHhHHHH-HhHHHHHHHhhhhhhh
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD-AMKSIGSAYAAL-AGGLGCFAASILNSII 426 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~-~mr~~~~gl~~l-~~a~g~~l~~~l~~~v 426 (499)
.++++...++.++++....|.....+.+..|+ ..|+...+.... ...+|..+++.+....
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666668999999999999999999998 678888887777 4667777777555443
No 294
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.03 E-value=1.1e+02 Score=29.82 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=33.1
Q ss_pred CCCcccccCccch---hH---HH---HHHHHHHHHHHHHHHHHhhcccccccccccCCchhhhh
Q 010840 437 QPNWLAQNINTGR---FD---YL---YWLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVME 491 (499)
Q Consensus 437 ~~~w~~~~ln~~~---l~---~~---f~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 491 (499)
+.+|-.+.+|+.. .+ += .-.++-+-++.++.|+++++--|+.|-+...+..|.+|
T Consensus 136 ~~~w~~~~lN~T~t~~~e~q~CGFLslQImGPlIVl~GLCFFVVAHvKKr~nln~~qd~se~Ee 199 (319)
T PF15471_consen 136 GSGWPQEPLNETDTSDSEPQICGFLSLQIMGPLIVLVGLCFFVVAHVKKRNNLNGSQDASESEE 199 (319)
T ss_pred CCCCccccccCCCCCCCCccccceeehhhhhhHHHHHhhhhhheeeeeeccCCCcccCcccccc
Confidence 3568877787643 11 11 12455566777788888887766665544444455555
No 295
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=29.09 E-value=5.7e+02 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHH
Q 010840 299 LYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILS 334 (499)
Q Consensus 299 l~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~ 334 (499)
++|.++..+..|..+. .....|+..|.++.++.
T Consensus 14 ~md~~lL~~t~~~~~~---~~~~~Rll~~A~~Gal~ 46 (293)
T PF03419_consen 14 LMDYFLLWLTARLLKR---RASRWRLLLGAAIGALY 46 (293)
T ss_pred HHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHH
Confidence 4455555555555554 46677888877766553
No 296
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.91 E-value=62 Score=31.28 Aligned_cols=14 Identities=36% Similarity=0.709 Sum_probs=6.3
Q ss_pred HHHhhccccccccc
Q 010840 468 FLYSAYRYKYRSEQ 481 (499)
Q Consensus 468 ~~~~~~~y~~~~~~ 481 (499)
+...++|++++-++
T Consensus 68 ~~~~~~k~~~~~~~ 81 (248)
T PF11368_consen 68 FIYKSRKYKKLYEE 81 (248)
T ss_pred HHHHHHHHHHHhcc
Confidence 34445555544333
No 297
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=28.49 E-value=1.5e+02 Score=28.87 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=22.9
Q ss_pred hcCchhhHHHHhHHHHHhHHHHHHHhhhhh
Q 010840 395 EAPDAMKSIGSAYAALAGGLGCFAASILNS 424 (499)
Q Consensus 395 ~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~ 424 (499)
.+.+-+|...+|+-.+.++..+.+-+...+
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~g 100 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASG 100 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 345567888888888888888888777754
No 298
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=27.82 E-value=6e+02 Score=25.06 Aligned_cols=105 Identities=14% Similarity=0.190 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc--
Q 010840 366 SAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-- 443 (499)
Q Consensus 366 s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~-- 443 (499)
-+.|-+.-+ +..-||++.-+.+++|-....-++.+=...+-+.++.+... +-. +..+.. -|+.|.|.
T Consensus 115 kvlW~i~~f-F~ls~el~~~v~glaFg~~~n~~Si~~aL~~T~liS~~~~a-~q~-~le~~y--------~d~~~~pl~f 183 (347)
T KOG4536|consen 115 KVLWNILTF-FTLSGELFLEVSGLAFGFQGNYASIAEALTRTFLISGAYSA-LQL-LLEAIY--------LDGFGVPLFF 183 (347)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhHHHH-HHH-HHHhee--------eccccCceee
Confidence 378888754 55668999999999999877666655444444444332221 111 112211 14567775
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 010840 444 NINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYRSEQK 482 (499)
Q Consensus 444 ~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 482 (499)
|+| +|-..+||+...--+.-.-.|..+.++|..+.|++
T Consensus 184 di~-~~gg~~fWl~ss~~l~Lvy~~~milp~~~~k~r~k 221 (347)
T KOG4536|consen 184 DIN-EHGGRFFWLWSSHKLLLVYSYGMILPMYNSKWREK 221 (347)
T ss_pred eec-ccCcEEEehHHHHHHHHHHHHHheeeccchhhhhc
Confidence 333 34445677443333333334555556666555544
No 299
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=27.47 E-value=7.8e+02 Score=26.30 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHH
Q 010840 372 IQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFA 418 (499)
Q Consensus 372 ~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l 418 (499)
..-.+-+.+|.|+...-.-....-=|++.|+.+..+-....-+|-.+
T Consensus 145 ~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvav 191 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAV 191 (480)
T ss_pred HhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHH
Confidence 34467788888877665566666778888888766655443333333
No 300
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.20 E-value=3.6e+02 Score=22.58 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=16.5
Q ss_pred hcCchhhHHHHhHHHHHhHHHHHHHhhhh
Q 010840 395 EAPDAMKSIGSAYAALAGGLGCFAASILN 423 (499)
Q Consensus 395 ~aP~~mr~~~~gl~~l~~a~g~~l~~~l~ 423 (499)
.+-++-|+..+++-..+=-++..+-+++.
T Consensus 34 ~~a~s~k~~~~a~klssefIsGilVGa~i 62 (116)
T COG5336 34 SSAESIKGYAQAFKLSSEFISGILVGAGI 62 (116)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34456677777766665555544444333
No 301
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=25.54 E-value=1.7e+02 Score=21.11 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhccchHH
Q 010840 99 FYLSVT-VGAIVAFTLVVYIQMEHGWGS 125 (499)
Q Consensus 99 ~Y~~iN-iG~~i~~~~~~~i~~~~g~~~ 125 (499)
+||..- +...+|..++=++.++.|+..
T Consensus 2 ~fW~a~ilt~~lGt~~~D~l~~~lglg~ 29 (55)
T PF03988_consen 2 FFWIAKILTTTLGTTAGDFLSKTLGLGY 29 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhccCccH
Confidence 566544 445667777777776655333
No 302
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.14 E-value=3.6e+02 Score=28.80 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=18.2
Q ss_pred hHHHHhHHHHHhHHHHHHHhhh
Q 010840 401 KSIGSAYAALAGGLGCFAASIL 422 (499)
Q Consensus 401 r~~~~gl~~l~~a~g~~l~~~l 422 (499)
+|...++|++..+++.++--.+
T Consensus 222 ~G~lf~lYli~Ygi~RF~iEfl 243 (460)
T PRK13108 222 HGRLFGFYVAFYCAGRFCVELL 243 (460)
T ss_pred CchHHHHHHHHHHHHHHHhhhh
Confidence 4999999999999999984433
No 303
>PHA03049 IMV membrane protein; Provisional
Probab=24.76 E-value=1.2e+02 Score=22.81 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccccCCchhhhhc
Q 010840 455 WLLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVMEN 492 (499)
Q Consensus 455 ~~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 492 (499)
+++--++++.+++|.+.-|+-.........+.+|..|+
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~~q~~~p~~e~ye~~e~ 44 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTTTSQNPPSQEKYEKMED 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCChhhccCchh
Confidence 33334556666777766655443333333334444443
No 304
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.66 E-value=3.2e+02 Score=27.16 Aligned_cols=49 Identities=12% Similarity=-0.034 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHh
Q 010840 371 LIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS 420 (499)
Q Consensus 371 i~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~ 420 (499)
-|.++--++.|.++....+-+..+. |...+|...+++.+..+++.+.-.
T Consensus 189 hPsqLYE~~~~~iv~~iil~~~~~~-~~~~~G~v~~~y~~~Yg~~Rf~iE 237 (287)
T COG0682 189 HPSQLYESFLEGIVFFIILFLFRRK-PLLKSGFVFGLYLIGYGLFRFFIE 237 (287)
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHhc-ccCCCeeeehhHHHHHHHHHHhhh
Confidence 3567788899999999988888877 778889999999999999999743
No 305
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=23.87 E-value=53 Score=32.12 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=38.7
Q ss_pred hhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 399 AMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 399 ~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
+.|+..+.+......+|..++-+.--.-..+. ......| ...+...+.+.++.+++|.++-++.+-+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~---~~~~~~W----------~~I~si~~lL~~IpLIly~ifGk~fd~~ 68 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVV---IALTNNW----------QWILSIFILLIFIPLILYIIFGKNFDIY 68 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHH---HHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 44666666666666667666544321110000 0001123 2345566777788889999999987655
Q ss_pred ccc
Q 010840 479 SEQ 481 (499)
Q Consensus 479 ~~~ 481 (499)
..+
T Consensus 69 ~~~ 71 (267)
T PF07672_consen 69 SPK 71 (267)
T ss_pred Ccc
Confidence 433
No 306
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=23.56 E-value=1.1e+02 Score=22.37 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccc
Q 010840 453 LYWLLAVLSVINFCAFLYSAYRYKYRSEQKH 483 (499)
Q Consensus 453 ~f~~la~l~~~~~~~~~~~~~~y~~~~~~~~ 483 (499)
|+.+..++.++.++.|-.+-||....+..++
T Consensus 8 y~~~Vi~l~vl~~~~Ftl~IRri~~~s~~kk 38 (58)
T PF13314_consen 8 YYILVIILIVLFGASFTLFIRRILINSNAKK 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6666667777778888888888766554433
No 307
>PF05024 Gpi1: N-acetylglucosaminyl transferase component (Gpi1); InterPro: IPR007720 Glycosylphosphatidylinositol (GPI) represents an important anchoring molecule for cell surface proteins. The first step in its synthesis is the transfer of N-acetylglucosamine (GlcNAc) from UDP-N-acetylglucosamine to phosphatidylinositol (PI). This chemically simple step is genetically complex because three or four genes are required in both Saccharomyces cerevisiae (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG A, PIG H and PIG C), respectively [].; GO: 0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity, 0006506 GPI anchor biosynthetic process, 0016021 integral to membrane
Probab=23.43 E-value=5.6e+02 Score=23.66 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=25.1
Q ss_pred hhHHHHHHHHH-----HHHHHHHHHHHhhcccccccccccCCchhhhhc
Q 010840 449 RFDYLYWLLAV-----LSVINFCAFLYSAYRYKYRSEQKHGNDYEVMEN 492 (499)
Q Consensus 449 ~l~~~f~~la~-----l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 492 (499)
|...+|...+- +..+..+..++..|||+..++--++.++|.|+-
T Consensus 124 Hi~~~y~~~~~ly~~ql~~l~sL~~LFrGkK~N~LR~R~Ds~~~~~dql 172 (189)
T PF05024_consen 124 HIYCFYVYSAKLYRWQLSVLKSLFRLFRGKKYNVLRNRVDSCEYDLDQL 172 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhccccCCCCcHHHH
Confidence 55566665544 345566677777788754332233456666553
No 308
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.13 E-value=1.1e+02 Score=21.82 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=11.2
Q ss_pred HHHHHhhccccccccccc
Q 010840 466 CAFLYSAYRYKYRSEQKH 483 (499)
Q Consensus 466 ~~~~~~~~~y~~~~~~~~ 483 (499)
+...-.+|+|.||-.-|.
T Consensus 18 ~~I~~~~K~ygYkht~d~ 35 (50)
T PF12606_consen 18 LSICTTLKAYGYKHTVDP 35 (50)
T ss_pred HHHHHHhhccccccccCC
Confidence 334467788888854433
No 309
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=22.82 E-value=3.8e+02 Score=22.51 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=31.7
Q ss_pred hhhHhHHHHHHH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 010840 93 DRFFNFFYLSVT-VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 137 (499)
Q Consensus 93 ~~~f~~~Y~~iN-iG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~ 137 (499)
++..++....++ ++.++|...++.-.++.||-++..+..+-.++.
T Consensus 36 e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il 81 (116)
T PF12670_consen 36 ESILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLIL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 345667666655 778888888888888899999986554444333
No 310
>PRK03612 spermidine synthase; Provisional
Probab=22.38 E-value=2.5e+02 Score=30.40 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=31.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhh-ccchH-HHHHHHHHHHHHHHHHHHhc
Q 010840 94 RFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWG-SAFGALAIAMGISNMLFFIG 144 (499)
Q Consensus 94 ~~f~~~Y~~iNiG~~i~~~~~~~i~~-~~g~~-~~F~i~~~~m~l~~i~f~~g 144 (499)
+....-|.+..+|+++|.++.+++-- ..|-. ..++++.+.++++++.+...
T Consensus 145 ~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 145 HNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred hhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888999999888887543 45643 44444555555554444433
No 311
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=22.22 E-value=8.7e+02 Score=26.38 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHh-hhhhhhcccc
Q 010840 370 LLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAAS-ILNSIIKSVT 430 (499)
Q Consensus 370 li~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~-~l~~~v~~~t 430 (499)
.+.+|++.++.--..++...+|.++.|.+..-|+||.+..-...+|.---. ++..+++..|
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 357999999999999999999999999999999999988777776654333 3334444444
No 312
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=21.67 E-value=9.6e+02 Score=25.30 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhh
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSI 425 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~ 425 (499)
.+..-++...++-=+|=-....+....+=+..|++.||...|.-.....+-..+.-.++-+
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666666666666777777789999999999999988888888887766543
No 313
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.26 E-value=3.5e+02 Score=22.31 Aligned_cols=35 Identities=9% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHHH
Q 010840 105 VGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNM 139 (499)
Q Consensus 105 iG~~i~~~~~~~i~~~~g----~~~~F~i~~~~m~l~~i 139 (499)
+..++|..++-|+-++++ |.+.|++.+++..+--+
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 334445555556655553 55565555554443333
No 314
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=21.00 E-value=8.8e+02 Score=25.59 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHH-HHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA-LAI 132 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i-~~~ 132 (499)
.+++-=+++++|.|+ -|-..+.-++-.+..+.- ...... ++|+ +|..+...+.=.+-.+.||++-... ..-
T Consensus 168 ~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~----~~~V~~-~~wa--ig~v~ea~law~vm~~~gwr~~l~~~~~p 239 (528)
T KOG0253|consen 168 SLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRW----LLTVMS-FFWA--IGQVFEALLAWGVMSNFGWRYLLFTSSTP 239 (528)
T ss_pred hhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCC----cchhHH-HHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhH
Confidence 344445678888888 777777766666543211 122222 4444 6777766655444557788766443 433
Q ss_pred HHHHHHH
Q 010840 133 AMGISNM 139 (499)
Q Consensus 133 ~m~l~~i 139 (499)
.|+.+..
T Consensus 240 l~~~a~f 246 (528)
T KOG0253|consen 240 LMFAARF 246 (528)
T ss_pred HHHHHHH
Confidence 3444433
No 315
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=20.57 E-value=4.7e+02 Score=23.28 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 116 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~ 116 (499)
.+.++.+=.+.++|.+.+-..-..++.+.-++ + .+++...+|.-..+.+.++|.++.-.
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~-~-----~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTE-E-----TIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH-H-----HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788889999998888877777643332 1 14556666655556777776655433
Done!