Query 010840
Match_columns 499
No_of_seqs 205 out of 1675
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 8E-25 2.7E-29 233.0 13.3 418 3-483 87-514 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 1.4E-19 4.9E-24 190.5 26.1 351 53-478 109-478 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.4 1.6E-11 5.3E-16 127.0 21.2 337 3-474 94-436 (451)
4 3o7q_A L-fucose-proton symport 99.1 1.9E-08 6.6E-13 103.2 25.9 109 3-142 93-227 (438)
5 2gfp_A EMRD, multidrug resista 98.9 2.7E-09 9.2E-14 107.7 8.8 83 51-139 87-169 (375)
6 4gc0_A D-xylose-proton symport 98.8 2.1E-07 7E-12 97.2 20.4 81 50-136 124-212 (491)
7 2cfq_A Lactose permease; trans 98.3 2.5E-06 8.7E-11 87.5 10.8 87 367-471 312-399 (417)
8 3o7q_A L-fucose-proton symport 98.1 5.7E-05 1.9E-09 77.1 17.1 113 284-427 65-177 (438)
9 4aps_A DI-OR tripeptide H+ sym 98.1 4.3E-05 1.5E-09 79.5 16.0 142 284-477 58-202 (491)
10 1pw4_A Glycerol-3-phosphate tr 98.0 4.9E-05 1.7E-09 77.8 14.3 113 284-426 66-178 (451)
11 2xut_A Proton/peptide symporte 97.5 0.001 3.4E-08 69.8 15.0 117 319-475 83-202 (524)
12 2gfp_A EMRD, multidrug resista 97.5 0.00027 9.1E-09 70.7 10.1 109 284-426 39-147 (375)
13 4gc0_A D-xylose-proton symport 96.2 0.057 2E-06 55.5 14.6 63 365-427 124-186 (491)
14 2cfq_A Lactose permease; trans 95.8 0.0064 2.2E-07 61.9 4.9 84 54-143 314-398 (417)
15 2knc_B Integrin beta-3; transm 45.2 3 0.0001 31.7 -1.0 15 484-498 53-67 (79)
16 2l8s_A Integrin alpha-1; trans 34.8 36 0.0012 23.6 3.3 35 456-490 16-50 (54)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=8e-25 Score=232.95 Aligned_cols=418 Identities=20% Similarity=0.330 Sum_probs=249.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.++..+|.+++.++. .+.+.++++..+.++|.|+..|+..++++|.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 87 TILWLSLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 45566677777776665531 034567888899999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVA 162 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~~ 162 (499)
+++ +....+.|++++.+.|+|..+++.+++++.+..||++.|.+.++..+++++.++..++++.+++|++++.....
T Consensus 140 ~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (524)
T 2xut_A 140 QSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFL 216 (524)
T ss_dssp TTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------
T ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHH
Confidence 644 22246789999999999999999999999888999999999998888888777666655544444444333333
Q ss_pred HHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccc--cccCCCCCc-------cccccch
Q 010840 163 QVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELK--EDVINPSPW-------KLCTVTQ 233 (499)
Q Consensus 163 ~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~--~~~~~~~~~-------~~~~~~~ 233 (499)
+.+..+.++++.+.+. ... ....... ........+.+....+..+..... .+.....+| +.++.++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (524)
T 2xut_A 217 PVIRSALLTKVEGKGN-IGL-VLALIGG---VSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAA 291 (524)
T ss_dssp ----------CTTHHH-HHH-HHHHHHH---HHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSS
T ss_pred HHHHHHHhhhhcccCc-cch-hhhhhhh---hhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhH
Confidence 3333333322110000 000 0000000 000000000000000000000000 000000122 1123334
Q ss_pred hhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcC
Q 010840 234 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITG 313 (499)
Q Consensus 234 ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~ 313 (499)
+++.|+.+..+++++...+++..+.|..+.+..|+..++.+. + ++.+.+..++++..++..|+.+++..|..+|+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (524)
T 2xut_A 292 VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGV 368 (524)
T ss_dssp STTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCC
Confidence 567777778888888888888888888888877776665432 2 3566778888889999999999887777776533
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010840 314 HPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLY 393 (499)
Q Consensus 314 ~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~ 393 (499)
+ +++.+++.+|+++.+++++..+..+..+ + ...+ .+.+|+++.+++.++++.+..|...+++.
T Consensus 369 ~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~---~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 431 (524)
T 2xut_A 369 K---LTALRKMGAGIAITGLSWIVVGTIQLMM----------D---GGSA-LSIFWQILPYALLTFGEVLVSATGLEFAY 431 (524)
T ss_dssp -----CCHHHHHTHHHHHHHHHHTTTTTTTTT----------T---TTCC-CCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred C---CChHHHHHHHHHHHHHHHHHHHHHHHHh----------c---CCCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 5677889999999888887766543210 0 0112 56788999999999999999999999999
Q ss_pred hhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccc-cCccchhHHHHHHHHHHHHHHHHHHHHhh
Q 010840 394 EEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTGRFDYLYWLLAVLSVINFCAFLYSA 472 (499)
Q Consensus 394 ~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~-~ln~~~l~~~f~~la~l~~~~~~~~~~~~ 472 (499)
+.+|+++||.++|++....++|+.+|+.+...+...+ +.+|.++ +++.+ .+.|++.+++++++.++++++.
T Consensus 432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT------VTEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH------HHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC---
T ss_pred HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc------ccccccccccccc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987754211 1235432 22221 2237888889999998888888
Q ss_pred ccccccccccc
Q 010840 473 YRYKYRSEQKH 483 (499)
Q Consensus 473 ~~y~~~~~~~~ 483 (499)
+++++++++++
T Consensus 504 ~~~~~~~~~~~ 514 (524)
T 2xut_A 504 RSYQMQDHYRQ 514 (524)
T ss_dssp -----------
T ss_pred HHhccchhhhh
Confidence 88876654433
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.85 E-value=1.4e-19 Score=190.53 Aligned_cols=351 Identities=18% Similarity=0.193 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 53 ~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
+.++++..+.++|.|...|+..++++|.+++++. .|...+++++.+.|+|..+++.+++++.++.||++.|.++++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~ 184 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAI 184 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677888899999999999999999999986542 257799999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcccccccc---CCCC-ChHHHHHHHHHH--------------HHhhccccccccccccccccCCCCccc
Q 010840 133 AMGISNMLFFIGTPLYRHR---LPGG-SPLTRVAQVLVA--------------AFRKRHAAFSSSELIGLYEVPGKHSAI 194 (499)
Q Consensus 133 ~m~l~~i~f~~g~~~~~~~---~p~g-~pl~~~~~vl~~--------------a~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (499)
..+++++.++..++++..+ +|+. ....+..+.... .......+. .+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~~------------- 250 (491)
T 4aps_A 185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSL-PAYI------------- 250 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCT-THHH-------------
T ss_pred HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccch-------------
Confidence 8888877666554443322 1111 111111110000 000000000 0000
Q ss_pred CCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhhhhhhhhhhHHHHHHHHhhchhhHHHHHhh-hcc
Q 010840 195 KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNT 273 (499)
Q Consensus 195 ~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~-m~~ 273 (499)
.. . ............. ..|+... ...+++|+..+.+++++...+++..+.+..+.+..+..+ .+.
T Consensus 251 ----~~--~---~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (491)
T 4aps_A 251 ----NL--L---TIVAIAIPVFYFA----WMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS 316 (491)
T ss_dssp ----HH--H---HHHHHHHHHHHHH----HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC
T ss_pred ----hh--h---hHHHHHHHHHHHH----HHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 00 0 0000000000000 0000000 112456677778888888999999999988887666543 333
Q ss_pred cccCeeecCCcccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 010840 274 HMGKLKLPVTCMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHG 353 (499)
Q Consensus 274 ~i~g~~ip~~~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g 353 (499)
+ ..+...+..++.+..++..++..++..++.||. +...+++.+|+++.+++++..+...... +
T Consensus 317 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 379 (491)
T 4aps_A 317 S----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY-------G 379 (491)
T ss_dssp S----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---------CHHHHHHHHHHHHHHHTTTHHHHHHC-------C
T ss_pred C----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC------CCchHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 2 146778899999999999999888655544431 5667889999999999998887765321 0
Q ss_pred CcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhccccCCC
Q 010840 354 YEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNP 433 (499)
Q Consensus 354 ~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~ 433 (499)
.+.+ .+.+|+++.+++.++++.+..|...+++.+..|++.||.++|++.....+|..+++.+...+...
T Consensus 380 ------~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---- 448 (491)
T 4aps_A 380 ------TSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---- 448 (491)
T ss_dssp ------CCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----
T ss_pred ------CCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 0112 56889999999999999999999999999999999999999999999999999999887654421
Q ss_pred CCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 010840 434 KKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKYR 478 (499)
Q Consensus 434 ~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~~ 478 (499)
.....|+.+++++++..++++++.++.+++
T Consensus 449 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 449 ---------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp ---------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123467778888888888777777766554
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.40 E-value=1.6e-11 Score=126.97 Aligned_cols=337 Identities=11% Similarity=0.034 Sum_probs=185.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.++..+|.+++.+... .. .+.+.++++..+.++|.|...|...+++.|.++
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~---~~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~ 149 (451)
T 1pw4_A 94 FLPAGLILAAAVMLFMGFVPW---AT---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWS 149 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHCHH---HH---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhh---cc---------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCC
Confidence 456677777777777765210 00 122467778889999999999999999999997
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHhccccccccCCCCChHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 161 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g-~~~~F~i~~~~m~l~~i~f~~g~~~~~~~~p~g~pl~~~ 161 (499)
+++ |.+.+.++..+.++|.++++.+++++.+..| |++.|.+.++..++..+..+...+. +|+...
T Consensus 150 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~---- 215 (451)
T 1pw4_A 150 QKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD----TPQSCG---- 215 (451)
T ss_dssp TTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC----SSTTTC----
T ss_pred chh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccC----CHhhcC----
Confidence 532 6889999999999999999999999878888 9999998887766555443332211 111000
Q ss_pred HHHHHHHHhhccccccccccccccccCCCCcccCCCcccccccccccccceeeccccccCCCCCccccccchhhHhHHhh
Q 010840 162 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLV 241 (499)
Q Consensus 162 ~~vl~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~ve~~k~~l 241 (499)
. .+.+.. +.+ .. .. .. ++.. . ...+ +.....+..+-.
T Consensus 216 -----------~--~~~~~~----~~~------~~-~~--~~------~~~~----~----~~~~---~~~~~~~~~~~~ 252 (451)
T 1pw4_A 216 -----------L--PPIEEY----KND------YP-DD--YN------EKAE----Q----ELTA---KQIFMQYVLPNK 252 (451)
T ss_dssp -----------C--CSCTTT----CCC------------------------------------CC---THHHHHHTSSCH
T ss_pred -----------C--CChhhh----ccc------cc-cc--ch------hhhh----c----cccc---ccchHHHHHcCH
Confidence 0 000000 000 00 00 00 0000 0 0000 000001110001
Q ss_pred hhhhhhhhHHHHHHHHhhchhhHHHHHhhhcccccCeeecCC---cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCC
Q 010840 242 RLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHMGKLKLPVT---CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGA 318 (499)
Q Consensus 242 ~~l~l~~~~i~f~~~~~Q~~t~~~~qa~~m~~~i~g~~ip~~---~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~ 318 (499)
++..+.+...+.+..+....+.+..+ +.... +.++. .+.....+..++..++..++ .+|..+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~g~l----~~~~~~----- 317 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTY---LKEVK---HFALDKSSWAYFLYEYAGIPGTLLCGWM----SDKVFR----- 317 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---BTTBS---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTST-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhc-----
Confidence 12222233333333332222222222 22211 12222 33344444444444444333 333210
Q ss_pred CchhhHHHHHHHHH-HHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 010840 319 SQLQRVGIGLAVSI-LSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAP 397 (499)
Q Consensus 319 s~l~ri~iG~~l~~-l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP 397 (499)
+..+.+.++.++.+ ++++..... ++.+.++.+...++.+++-....+....++.+..|
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 376 (451)
T 1pw4_A 318 GNRGATGVFFMTLVTIATIVYWMN---------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAP 376 (451)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSC---------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSC
T ss_pred CCchhHHHHHHHHHHHHHHHHHHh---------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhc
Confidence 22233444444433 343332211 10246666777788888888888888999999999
Q ss_pred chhhHHHHhHHHHHhHH-HHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840 398 DAMKSIGSAYAALAGGL-GCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 474 (499)
Q Consensus 398 ~~mr~~~~gl~~l~~a~-g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~ 474 (499)
++.||.++|++.....+ |..+++.+...+.... + ....|+..++++++..++++...++
T Consensus 377 ~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--------g----------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 377 KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF--------G----------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--------C----------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------C----------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999 9999998877654211 1 2346677777777777766655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.11 E-value=1.9e-08 Score=103.24 Aligned_cols=109 Identities=13% Similarity=0.068 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCccCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccCCccchhhhhhccCC
Q 010840 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (499)
Q Consensus 3 ~i~~~~~~~~~G~~~l~lsa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~ 82 (499)
++.++.++..+|.++..+.+.. .+.+.++++..+.++|.|...+...+++.|.++
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 147 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC
Confidence 4667778888888777544331 135678889999999999999999999999998
Q ss_pred CCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHh-hccc-------------------------hHHHHHHHHHHHHH
Q 010840 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGI 136 (499)
Q Consensus 83 ~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~-~~~g-------------------------~~~~F~i~~~~m~l 136 (499)
+++ |...++++..+.++|.++++.+++++. +..+ |++.|.+.++..++
T Consensus 148 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 148 ESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp STT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 643 567899999999999999999999987 5544 89999776665555
Q ss_pred HHHHHH
Q 010840 137 SNMLFF 142 (499)
Q Consensus 137 ~~i~f~ 142 (499)
..+.++
T Consensus 222 ~~~~~~ 227 (438)
T 3o7q_A 222 VALLIM 227 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.89 E-value=2.7e-09 Score=107.69 Aligned_cols=83 Identities=11% Similarity=0.179 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
+.+.++++..+.++|.|...|...++..|.+++++ |.+.+.++..+.++|..+++.+++++.++.||+..|.+.
T Consensus 87 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 87 SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 34567778888999999999999999999987543 678899999999999999999999998888999999887
Q ss_pred HHHHHHHHH
Q 010840 131 AIAMGISNM 139 (499)
Q Consensus 131 ~~~m~l~~i 139 (499)
++..++..+
T Consensus 161 ~~~~~~~~~ 169 (375)
T 2gfp_A 161 LVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 776665544
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.81 E-value=2.1e-07 Score=97.23 Aligned_cols=81 Identities=14% Similarity=0.218 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc--------c
Q 010840 50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H 121 (499)
Q Consensus 50 ~~~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~--------~ 121 (499)
.+.+.++++=.+.++|.|+.-+....+++|..+++. |.....++..++++|.+++..+...+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 356788899999999999999999999999887422 67788888899999999888877665432 3
Q ss_pred chHHHHHHHHHHHHH
Q 010840 122 GWGSAFGALAIAMGI 136 (499)
Q Consensus 122 g~~~~F~i~~~~m~l 136 (499)
+|++.+.+..+..++
T Consensus 198 ~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 198 GWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHTTHHHHHH
T ss_pred hhHHHhhhhhhhhhh
Confidence 466666554444333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.28 E-value=2.5e-06 Score=87.54 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhH-HHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccC
Q 010840 367 AYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAY-AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNI 445 (499)
Q Consensus 367 ~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl-~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~l 445 (499)
.++++...++.+++.....+....+..+..|++.||..+|+ +....++|..+++.+...+.. ..
T Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~---------------~~ 376 (417)
T 2cfq_A 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE---------------SI 376 (417)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH---------------HS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH---------------hc
Confidence 45555556667777666677778899999999999999998 477777888888887764331 00
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHh
Q 010840 446 NTGRFDYLYWLLAVLSVINFCAFLYS 471 (499)
Q Consensus 446 n~~~l~~~f~~la~l~~~~~~~~~~~ 471 (499)
.....|.+.++++++..++.+..
T Consensus 377 ---g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 377 ---GFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHhh
Confidence 12335666777777766655443
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.13 E-value=5.7e-05 Score=77.09 Aligned_cols=113 Identities=12% Similarity=0.022 Sum_probs=85.7
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+..++..|+..++ .+| ....+-+.+|.++.+++.+..+.... .
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l----~dr-------~g~r~~l~~~~~~~~~~~~~~~~~~~-------------------~ 114 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGIL----MKK-------LSYKAGIITGLFLYALGAALFWPAAE-------------------I 114 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHH----HHH-------SCHHHHHHHHHHHHHHHHHHHHHHHH-------------------T
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHH-------hcchHHHHHHHHHHHHHHHHHHhccc-------------------c
Confidence 34455555555666665554 344 23334477888888888777643321 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+...+.
T Consensus 115 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 115 -MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888999999999999999999999999999999999999999999999999887654
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.11 E-value=4.3e-05 Score=79.54 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=97.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhh-hcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRR-ITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAM 362 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r-~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~ 362 (499)
++.+...+...+..|+..++. +| + ...+-+.+|.++.+++.+..++.
T Consensus 58 ~~~~~~~~~~~~~~~~~g~l~----dr~~-------g~r~~~~~~~~~~~~~~~~~~~~--------------------- 105 (491)
T 4aps_A 58 SIMAIYASMVYLSGTIGGFVA----DRII-------GARPAVFWGGVLIMLGHIVLALP--------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHTS-------CHHHHHHHHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hccc-------cchHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 445555566666666655543 33 2 12233667777777766655431
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh--hHHHHhHHHHHhHHHHHHHhhhhhhhccccCCCCCCCCCc
Q 010840 363 PDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAM--KSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNW 440 (499)
Q Consensus 363 ~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~m--r~~~~gl~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w 440 (499)
.+.++++...++.|+++....|....++.+..|++. |+..++++....++|..+++.+...+... .+|
T Consensus 106 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~g~ 175 (491)
T 4aps_A 106 --FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA--------AGY 175 (491)
T ss_dssp --CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------SCH
T ss_pred --hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh--------hhH
Confidence 335667778899999999999999999999999988 88888888899999999999888765421 124
Q ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 010840 441 LAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYKY 477 (499)
Q Consensus 441 ~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~~ 477 (499)
...|+..+++.++..++++...+++..
T Consensus 176 ----------~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 176 ----------HVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 335555666666666666666665543
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.03 E-value=4.9e-05 Score=77.81 Aligned_cols=113 Identities=10% Similarity=-0.078 Sum_probs=83.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+..++ .+|+ ...+-+.+|.++.+++.+..++.... +
T Consensus 66 ~~~~~~~~~~~~~~~~~G~l----~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~----~-------------- 116 (451)
T 1pw4_A 66 FALSGISIAYGFSKFIMGSV----SDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA----T-------------- 116 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH----H--------------
T ss_pred HHHHHHHHHHHHHHHhHHHH----HHhc-------CchHHHHHHHHHHHHHHHHHHhhhhc----c--------------
Confidence 34444445555555555443 4442 33344778888888888777662210 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 117 -~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 117 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777899999999999999999999999999999999999999999999998887653
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.55 E-value=0.001 Score=69.75 Aligned_cols=117 Identities=15% Similarity=0.104 Sum_probs=81.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
...+-+.+|.++.+++.+..++.. .+.++++...++.|+++....|....++.+..|+
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 140 (524)
T 2xut_A 83 GKYNTILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ 140 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc
Confidence 334446677777777766655420 1467777888999999999999999999999999
Q ss_pred hhhHHHHhH---HHHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 010840 399 AMKSIGSAY---AALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRY 475 (499)
Q Consensus 399 ~mr~~~~gl---~~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y 475 (499)
+.|+..+++ +....++|..+++.+...+... -+| ...|++.+++.++..++++...+++
T Consensus 141 ~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~g~----------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 141 SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN--------FGA----------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT--------SCH----------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------ccH----------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999877666 8888889998888887654321 123 3356666666666555554443433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.55 E-value=0.00027 Score=70.67 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=81.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+..+ +.+|.+++ +-+.+|.++.+++.+..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~g~----l~dr~g~r-------~~~~~~~~~~~~~~~~~~~~---------------------- 85 (375)
T 2gfp_A 39 SVMGAYLLTYGVSQLFYGP----ISDRVGRR-------PVILVGMSIFMLATLVAVTT---------------------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTHHH----HHTTSCCC-------CCCHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhCCc-------hhHHHHHHHHHHHHHHHHHh----------------------
Confidence 3444445555555555444 34453322 22557777777777766654
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+...+
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33667777889999999999999999999999999999999999999999999999887654
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.24 E-value=0.057 Score=55.50 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=56.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhhc
Q 010840 365 LSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 427 (499)
Q Consensus 365 ~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v~ 427 (499)
.+++.++..-++.|+|+-...+....++.+.+|++.|+..++++.....+|..++..+.....
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 457778888999999999999999999999999999999999999999999998887766544
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.85 E-value=0.0064 Score=61.85 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhH-HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 010840 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (499)
Q Consensus 54 ~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~~~~~i~~~~g~~~~F~i~~~ 132 (499)
.+.+...+.+++.+.+-+...++..|.+++ + .|...+.+ +..+.++|+.+++.+++++.++.|+...|.+.++
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---~---~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEV---R---FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCH---H---HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH---H---HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 334444455556555556667788888763 2 24666777 4566779999999999999888899999988888
Q ss_pred HHHHHHHHHHh
Q 010840 133 AMGISNMLFFI 143 (499)
Q Consensus 133 ~m~l~~i~f~~ 143 (499)
..+++.++.+.
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 77777765543
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.25 E-value=3 Score=31.73 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=9.6
Q ss_pred CCchhhhhccccCCC
Q 010840 484 GNDYEVMENKLYDSP 498 (499)
Q Consensus 484 ~~~~~~~~~~~~~~~ 498 (499)
....++.|+-||.+|
T Consensus 53 ~~~w~~~~NPlyk~~ 67 (79)
T 2knc_B 53 RAKWDTANNPLYKEA 67 (79)
T ss_dssp HHHHTTTTCCHHHHC
T ss_pred hcccccCCCCCccCC
Confidence 344566777777765
No 16
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=34.80 E-value=36 Score=23.62 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccCCchhhh
Q 010840 456 LLAVLSVINFCAFLYSAYRYKYRSEQKHGNDYEVM 490 (499)
Q Consensus 456 ~la~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 490 (499)
+++++-++.++++.+.---.=+|++.++..|.|+.
T Consensus 16 vl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~~~ 50 (54)
T 2l8s_A 16 AFAGLLLLMLLILALWKIGFFKRPLKKKMEKLEHH 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC----
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCcchhhHHhhh
Confidence 34555555555555543333344555556666653
Done!