Query 010840
Match_columns 499
No_of_seqs 205 out of 1675
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 15:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010840.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010840hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.3 1.4E-10 1E-14 116.6 21.9 85 52-142 116-201 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.0 1.6E-08 1.1E-12 98.8 20.8 117 319-476 287-404 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 98.2 1E-05 7.6E-10 79.9 16.2 113 284-426 63-175 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 97.1 0.00034 2.4E-08 66.9 7.2 86 52-143 312-398 (417)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 30.5 4.9 0.00036 29.4 -0.0 29 454-482 22-50 (91)
6 d2qkwa1 a.8.8.1 (A:29-129) Avi 28.3 6.4 0.00047 27.5 0.3 26 388-413 25-50 (101)
7 d2oara1 f.16.1.1 (A:10-118) Ga 14.0 24 0.0017 26.5 0.8 22 462-483 72-93 (109)
8 d1dq3a2 d.50.3.1 (A:336-414) P 8.1 35 0.0025 22.7 -0.2 17 227-243 61-77 (79)
9 d1xmeb2 f.17.2.1 (B:3-36) Bact 7.8 1.9E+02 0.014 15.7 3.3 19 120-139 13-31 (34)
10 d2iuba2 f.17.3.1 (A:286-349) M 5.3 1.3E+02 0.0096 19.4 1.7 30 433-474 34-63 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.27 E-value=1.4e-10 Score=116.63 Aligned_cols=85 Identities=12% Similarity=0.174 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~~~~~i~~~-~g~~~~F~i~ 130 (499)
...++++..+.++|.|..-+...++++|.+++++ |...+.++..+.++|..+++.+.+++.+. .+|+..|.+.
T Consensus 116 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~ 189 (447)
T d1pw4a_ 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMP 189 (447)
T ss_dssp SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhhhcccccchhh
Confidence 3467778888999999999999999999987532 67889999999999999999888876544 4788888877
Q ss_pred HHHHHHHHHHHH
Q 010840 131 AIAMGISNMLFF 142 (499)
Q Consensus 131 ~~~m~l~~i~f~ 142 (499)
++..++..++.+
T Consensus 190 ~~~~~~~~~~~~ 201 (447)
T d1pw4a_ 190 AFCAILVALFAF 201 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 766655544333
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=98.98 E-value=1.6e-08 Score=98.78 Aligned_cols=117 Identities=12% Similarity=0.077 Sum_probs=84.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 010840 319 SQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMPDLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPD 398 (499)
Q Consensus 319 s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~ 398 (499)
...+-+.++.++.+++++..... .+.++.+...++.+++..+..+....++.+..|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 343 (417)
T d1pv7a_ 287 GGKNALLLAGTIMSVRIIGSSFA-----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTC-----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred ccccchhhhHHHHHHhhhccccc-----------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 34445666666666665554322 3467778888999999999999999999999999
Q ss_pred hhhHHHHhHH-HHHhHHHHHHHhhhhhhhccccCCCCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 010840 399 AMKSIGSAYA-ALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYRYK 476 (499)
Q Consensus 399 ~mr~~~~gl~-~l~~a~g~~l~~~l~~~v~~~t~~~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~y~ 476 (499)
+.|+..+|+. .+..++|..+++.+...+.... + ....|++.++++++..++..+.-|+-+
T Consensus 344 ~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~--------g----------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--------G----------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH--------C----------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------C----------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999975 4667788888888776543211 0 234667777888777777666665543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=98.22 E-value=1e-05 Score=79.90 Aligned_cols=113 Identities=10% Similarity=-0.080 Sum_probs=84.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCC
Q 010840 284 CMPVFPGLSIFLILSLYYSTFVPLCRRITGHPRGASQLQRVGIGLAVSILSVIWAGIFERYRRNYAISHGYEFSFLTAMP 363 (499)
Q Consensus 284 ~l~~~n~i~iiil~pl~~~i~~p~~~r~~~~~~~~s~l~ri~iG~~l~~l~~~~~a~~e~~r~~~~~~~g~~~~~~~~~~ 363 (499)
++.+...+...+..|+...+ ..|. +..+-+.+|+++.+++.+..+.+... .
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~------------------~ 113 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSV----SDRS-------NPRVFLPAGLILAAAVMLFMGFVPWA------------------T 113 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHCHHH------------------H
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHc-------CchHHHHHHHHHHHHHHhhccccchh------------------h
Confidence 44455555555666655444 4442 33344778888888888777665321 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHhHHHHHhHHHHHHHhhhhhhh
Q 010840 364 DLSAYWLLIQYCLIGIAEVFCIVGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 426 (499)
Q Consensus 364 ~~s~~wli~~~~l~~igE~~~~p~~~ef~~~~aP~~mr~~~~gl~~l~~a~g~~l~~~l~~~v 426 (499)
.+.++++...++.++++....+.....+.+..|++.|+..+|++....++|..+++.+....
T Consensus 114 -~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~ 175 (447)
T d1pw4a_ 114 -SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175 (447)
T ss_dssp -SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence 34567777889999999999999999999999999999999999999999999888776653
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.10 E-value=0.00034 Score=66.86 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhccCCCCChhhhhhhhhhHhHHHH-HHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 010840 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (499)
Q Consensus 52 ~~~~~~~L~lia~G~G~~kp~~~a~~~dq~~~~~~~~~~~~~~~f~~~Y~-~iNiG~~i~~~~~~~i~~~~g~~~~F~i~ 130 (499)
.+.+++...+.+++.|...+...++..|.++++. |.+.+...+. +.++|..+++.+.+++.|+.||+..|.+.
T Consensus 312 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~ 385 (417)
T d1pv7a_ 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
Confidence 4566777788899999999999999999988533 5677887664 45699999999999999999999999888
Q ss_pred HHHHHHHHHHHHh
Q 010840 131 AIAMGISNMLFFI 143 (499)
Q Consensus 131 ~~~m~l~~i~f~~ 143 (499)
++..+++.++.++
T Consensus 386 ~~~~~~~~~~~~~ 398 (417)
T d1pv7a_ 386 GLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777766665444
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=30.50 E-value=4.9 Score=29.42 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccc
Q 010840 454 YWLLAVLSVINFCAFLYSAYRYKYRSEQK 482 (499)
Q Consensus 454 f~~la~l~~~~~~~~~~~~~~y~~~~~~~ 482 (499)
+++.+++.++...++..+..||+++++++
T Consensus 22 ~~i~~iv~v~V~~~~~~~~~ryR~~~~~~ 50 (91)
T d1fftb2 22 FGLMLIVVIPAILMAVGFAWKYRASNKDA 50 (91)
T ss_dssp HHHTTTTTTHHHHHHHTTTTTTTTSTTTC
T ss_pred HHHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 34444455555556666777777665443
No 6
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=28.27 E-value=6.4 Score=27.46 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=22.4
Q ss_pred HHHHHHhhcCchhhHHHHhHHHHHhH
Q 010840 388 LLEFLYEEAPDAMKSIGSAYAALAGG 413 (499)
Q Consensus 388 ~~ef~~~~aP~~mr~~~~gl~~l~~a 413 (499)
.-||+.++||+++|+.+-.+|.-+.-
T Consensus 25 qhefissqap~slr~~ynnlyshtqr 50 (101)
T d2qkwa1 25 QHEFVSSQAPQSLRNRYNNLYSHTQR 50 (101)
T ss_dssp HHTTTSSSCCSSGGGHHHHHHHHHHH
T ss_pred HHHHHhhcCcHHHHHHHhhHHHHHHh
Confidence 45899999999999999999877653
No 7
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.04 E-value=24 Score=26.50 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhccccccccccc
Q 010840 462 VINFCAFLYSAYRYKYRSEQKH 483 (499)
Q Consensus 462 ~~~~~~~~~~~~~y~~~~~~~~ 483 (499)
++++++|+++.+.+++.++.++
T Consensus 72 IiA~vv~F~vvk~~n~~~~k~~ 93 (109)
T d2oara1 72 LIAFAVYFLVVLPYNTLRKKGE 93 (109)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 4455555555555654433333
No 8
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.13 E-value=35 Score=22.75 Aligned_cols=17 Identities=47% Similarity=0.600 Sum_probs=12.5
Q ss_pred cccccchhhHhHHhhhh
Q 010840 227 KLCTVTQVEEVKTLVRL 243 (499)
Q Consensus 227 ~~~~~~~ve~~k~~l~~ 243 (499)
+++..+..||+|+++-+
T Consensus 61 kly~~tk~e~vkrmlhl 77 (79)
T d1dq3a2 61 KLYEATKDEEVKRMLHL 77 (79)
T ss_dssp HHHHHHCCHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHh
Confidence 34667788999988754
No 9
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=7.76 E-value=1.9e+02 Score=15.71 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=9.5
Q ss_pred ccchHHHHHHHHHHHHHHHH
Q 010840 120 EHGWGSAFGALAIAMGISNM 139 (499)
Q Consensus 120 ~~g~~~~F~i~~~~m~l~~i 139 (499)
..|| ++|.++-...+++++
T Consensus 13 ekgw-lafslamlfvfiali 31 (34)
T d1xmeb2 13 EKGW-LAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHH-HHHHHHHHHHHHHHH
T ss_pred HhhH-HHHHHHHHHHHHHHH
Confidence 3454 566555444444444
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.31 E-value=1.3e+02 Score=19.39 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=0.0
Q ss_pred CCCCCCCcccccCccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 010840 433 PKKGQPNWLAQNINTGRFDYLYWLLAVLSVINFCAFLYSAYR 474 (499)
Q Consensus 433 ~~~~~~~w~~~~ln~~~l~~~f~~la~l~~~~~~~~~~~~~~ 474 (499)
|..+.+.| ||+.+++...+..+.++.+.||
T Consensus 34 P~~~~~~~------------~~~~~~~~~~~~~~~~~~f~rk 63 (64)
T d2iuba2 34 PELRWKWG------------YPVVLAVMGVIAVIMVVYFKKK 63 (64)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTTTSC
T ss_pred CCCCccHH------------HHHHHHHHHHHHHHHHHHHhcc
Done!