Query 010841
Match_columns 499
No_of_seqs 242 out of 958
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:10:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 2.2E-80 4.7E-85 615.0 21.2 236 227-498 1-237 (258)
2 KOG4441 Proteins containing BT 99.9 1.6E-26 3.5E-31 253.6 18.2 236 29-370 20-260 (571)
3 PHA02790 Kelch-like protein; P 99.9 1.3E-25 2.9E-30 241.6 11.7 179 37-269 14-195 (480)
4 PHA02713 hypothetical protein; 99.9 3.1E-25 6.7E-30 242.9 11.8 183 34-269 14-200 (557)
5 PHA03098 kelch-like protein; P 99.9 2.6E-22 5.6E-27 217.4 14.0 174 42-269 6-181 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 9.2E-18 2E-22 143.8 9.3 105 37-149 2-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 6.8E-16 1.5E-20 124.7 6.9 89 47-143 1-90 (90)
8 KOG2075 Topoisomerase TOP1-int 99.4 2.9E-12 6.2E-17 135.2 12.6 188 33-269 102-295 (521)
9 KOG4350 Uncharacterized conser 99.2 3.6E-11 7.8E-16 124.7 6.6 128 15-151 13-146 (620)
10 KOG4591 Uncharacterized conser 99.0 4.7E-10 1E-14 107.5 6.6 133 25-176 43-183 (280)
11 KOG4682 Uncharacterized conser 98.7 8.1E-08 1.7E-12 100.2 9.3 177 39-268 63-246 (488)
12 KOG0783 Uncharacterized conser 98.4 5E-07 1.1E-11 100.9 6.6 138 33-188 696-847 (1267)
13 KOG0783 Uncharacterized conser 98.1 3.2E-06 7E-11 94.6 6.1 63 45-109 558-633 (1267)
14 PF11822 DUF3342: Domain of un 97.9 1.1E-05 2.4E-10 83.0 4.3 93 48-150 1-104 (317)
15 PF02214 BTB_2: BTB/POZ domain 96.7 0.00099 2.1E-08 56.3 2.6 81 48-131 1-88 (94)
16 smart00512 Skp1 Found in Skp1 96.7 0.0032 6.9E-08 54.6 5.3 79 48-129 4-104 (104)
17 KOG2716 Polymerase delta-inter 96.2 0.02 4.2E-07 57.1 8.3 94 48-150 7-105 (230)
18 KOG2838 Uncharacterized conser 95.2 0.018 3.8E-07 58.5 3.5 86 42-129 127-218 (401)
19 KOG3473 RNA polymerase II tran 94.9 0.067 1.4E-06 46.6 5.9 73 53-128 25-111 (112)
20 PF03931 Skp1_POZ: Skp1 family 94.6 0.12 2.7E-06 40.8 6.3 55 48-106 3-58 (62)
21 KOG1724 SCF ubiquitin ligase, 93.5 0.13 2.9E-06 48.7 5.3 91 53-152 13-129 (162)
22 KOG3840 Uncharaterized conserv 91.6 0.82 1.8E-05 47.4 8.5 111 40-152 90-222 (438)
23 KOG2838 Uncharacterized conser 88.5 0.33 7.2E-06 49.5 2.7 58 56-114 262-330 (401)
24 KOG0511 Ankyrin repeat protein 82.8 1.7 3.7E-05 46.4 4.7 106 55-166 301-412 (516)
25 KOG2714 SETA binding protein S 79.4 4 8.7E-05 44.2 6.1 81 48-131 13-99 (465)
26 smart00875 BACK BTB And C-term 77.5 2.9 6.2E-05 34.4 3.6 38 232-269 35-72 (101)
27 PF01466 Skp1: Skp1 family, di 72.7 2.6 5.6E-05 34.8 2.1 35 111-151 10-44 (78)
28 PF07707 BACK: BTB And C-termi 72.7 2.1 4.5E-05 35.8 1.5 40 232-271 35-74 (103)
29 KOG1987 Speckle-type POZ prote 72.1 5.6 0.00012 40.2 4.8 89 54-150 109-201 (297)
30 KOG0511 Ankyrin repeat protein 69.4 0.99 2.2E-05 48.1 -1.3 95 31-130 133-232 (516)
31 KOG1665 AFH1-interacting prote 66.6 19 0.00041 36.3 6.9 88 48-144 11-105 (302)
32 KOG2715 Uncharacterized conser 52.6 54 0.0012 31.7 7.0 97 46-150 21-122 (210)
33 COG5201 SKP1 SCF ubiquitin lig 50.3 57 0.0012 30.3 6.5 91 51-151 8-123 (158)
34 KOG3713 Voltage-gated K+ chann 48.7 53 0.0011 36.3 7.2 110 19-144 11-134 (477)
35 COG3510 CmcI Cephalosporin hyd 36.0 24 0.00051 35.0 2.0 28 469-496 183-212 (237)
36 PF10929 DUF2811: Protein of u 36.0 22 0.00048 28.2 1.4 15 482-496 9-23 (57)
37 PF01692 Paramyxo_C: Paramyxov 26.6 1.3E+02 0.0029 29.0 5.2 78 95-173 97-183 (204)
38 PF01402 RHH_1: Ribbon-helix-h 24.4 1.1E+02 0.0024 21.2 3.4 34 236-269 5-39 (39)
39 KOG2723 Uncharacterized conser 23.6 2.1E+02 0.0045 28.7 6.2 80 48-131 11-97 (221)
40 PHA00617 ribbon-helix-helix do 23.1 1.3E+02 0.0028 25.5 4.0 36 235-270 44-80 (80)
41 KOG4350 Uncharacterized conser 22.2 57 0.0012 35.6 2.1 121 112-268 145-267 (620)
42 KOG2016 NEDD8-activating compl 22.1 90 0.0019 34.5 3.6 58 439-496 344-431 (523)
43 PF14363 AAA_assoc: Domain ass 21.3 55 0.0012 28.2 1.5 26 471-496 29-54 (98)
44 PF11123 DNA_Packaging_2: DNA 21.1 48 0.0011 27.8 1.0 16 481-496 31-46 (82)
45 KOG3863 bZIP transcription fac 21.0 21 0.00045 40.5 -1.5 38 35-77 4-41 (604)
46 PF00306 ATP-synt_ab_C: ATP sy 20.9 73 0.0016 27.8 2.2 35 437-472 33-69 (113)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=2.2e-80 Score=615.05 Aligned_cols=236 Identities=54% Similarity=0.870 Sum_probs=205.4
Q ss_pred CCccccccccCChhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccCCCCcccccccccCCCCCCCCCCCCCcce
Q 010841 227 PDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHM 306 (499)
Q Consensus 227 ~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (499)
+||||||++.|++++|+|||.+|+++|+++++|+++|++||+||||++++......
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~------------------------ 56 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSS------------------------ 56 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccc------------------------
Confidence 58999999999999999999999999999999999999999999999966421110
Q ss_pred eecCCCCCCcchhhhhhHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccceeccc
Q 010841 307 IVAGMKDDPPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLIPA 386 (499)
Q Consensus 307 ~~~~~~~~~~~~~~~~~r~llEtiv~lLP~ek~~vsc~fL~~LLr~A~~l~as~~cr~~LE~rIg~qLd~AtldDLLIPs 386 (499)
...........+||.+||+||+|||.+|++|||+|||+|||+|+++++|+.||.+||+|||+|||||||||||||+
T Consensus 57 ----~~~~~~~~~~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~ 132 (258)
T PF03000_consen 57 ----SSAESSTSSENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS 132 (258)
T ss_pred ----ccccccchhHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence 0111223455699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCCCCcccchHHHHHHHHHHHhccccCCCCCCcccccccccccccccCCCchhHHHHHHhhhhhhhhccCCCCCChhHH
Q 010841 387 -YSKGETLYDVDLVQRLLEHFLVQEQTESSSPSRQSFSDKHMYDASQRGNGTSAKMRVARLVDGYLTEVARDRNLSLTKF 465 (499)
Q Consensus 387 -~~~~~tlYDVd~V~Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVakLvD~YLaEVA~D~nL~~~KF 465 (499)
++.++|+||||+|+|||++||.+++..+...... .....+++.+++.+||||||+||+|||+|+||||+||
T Consensus 133 ~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~--------~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF 204 (258)
T PF03000_consen 133 SPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESE--------SESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKF 204 (258)
T ss_pred CCCcccchhhHHHHHHHHHHHHhcccccccccccc--------cccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 4466799999999999999999976533111000 0011256788999999999999999999999999999
Q ss_pred HHHHHhcCCCcccCCCchhHHHHHhhhhcCCCC
Q 010841 466 QVLAEALPESARTCDDGLYRAIDSYLKVISNFC 498 (499)
Q Consensus 466 ~~Lae~lPd~aR~~~DgLYRAIDiYLKaHp~l~ 498 (499)
++|||++|++||++|||||||||||||+||+|-
T Consensus 205 ~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls 237 (258)
T PF03000_consen 205 VALAEALPDSARPSHDGLYRAIDIYLKAHPGLS 237 (258)
T ss_pred HHHHHHCCHhhhhccchHHHHHHHHHHHcccCC
Confidence 999999999999999999999999999999973
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=253.55 Aligned_cols=236 Identities=19% Similarity=0.271 Sum_probs=189.5
Q ss_pred hhhhhcchhhhhhcCCCeeEEEEECCEEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCCCCCHHHHHHHHHHHhC
Q 010841 29 DGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYG 107 (499)
Q Consensus 29 ~~~~~~~~~~~r~~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~pgga~afell~~FcYt 107 (499)
..+--++.+-+|.++.+|||+|.|++++|++||.||||+|+|||+||+++ +|..+.+|+|++++ +++++++++|+||
T Consensus 20 ~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~--~~~l~~ll~y~Yt 97 (571)
T KOG4441|consen 20 SKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVD--PETLELLLDYAYT 97 (571)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCC--HHHHHHHHHHhhc
Confidence 33445678899999999999999999999999999999999999999987 89999999999987 8999999999999
Q ss_pred ceeecccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhh---HHHHHhhccchHHHHHHhchhhHHHHHH
Q 010841 108 IAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRD---SIIVLKSCEKLSPWAENLQIVRRCSESI 184 (499)
Q Consensus 108 g~i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d---~i~~L~sC~~L~~~Ae~~~iv~rcidal 184 (499)
+++.|+.+||+.|+.||.+|||++ |++.|++||.+++.++++. .++..++|.+|.+.|+. .|.+++.+-
T Consensus 98 ~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~v- 169 (571)
T KOG4441|consen 98 GKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADE-YILQHFAEV- 169 (571)
T ss_pred ceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHHH-
Confidence 999999999999999999999997 8999999999999884443 35566677777766666 333333322
Q ss_pred HHHHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCCChHHHHHHHH
Q 010841 185 AWKACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIM 264 (499)
Q Consensus 185 a~ka~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~ 264 (499)
. =.||+..|+.+.+..+|.......-+++.|+++++
T Consensus 170 -----------~---------------------------------~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~ 205 (571)
T KOG4441|consen 170 -----------S---------------------------------KTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAM 205 (571)
T ss_pred -----------h---------------------------------ccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHH
Confidence 0 14788889999999999999988889999999999
Q ss_pred HHHHHHhhcccccCCCCcccccccccCCCCCCCCCCCCCcceeecCCCCCCcchhhhhhHHHHHHHHHhCCCCC-CcccH
Q 010841 265 HYAAKWLTGLIRESSGTADEISSYSASNSNGSCSSWKGGLHMIVAGMKDDPPTVQAKDQRMIIESLISIIPPQK-DSVSC 343 (499)
Q Consensus 265 ~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiv~lLP~ek-~~vsc 343 (499)
.|.+.-.+- .++. +..+|..-| ..+|-
T Consensus 206 ~Wv~~d~~~------------------------------------------------R~~~----~~~ll~~vr~~ll~~ 233 (571)
T KOG4441|consen 206 RWVKHDFEE------------------------------------------------REEH----LPALLEAVRLPLLPP 233 (571)
T ss_pred HHHhcCHhh------------------------------------------------HHHH----HHHHHHhcCccCCCH
Confidence 988852210 1111 111222111 23678
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010841 344 SFLLRLLRMANMLKVAPALVTELEKRV 370 (499)
Q Consensus 344 ~fL~~LLr~A~~l~as~~cr~~LE~rI 370 (499)
.||.......-.+...+.||.-|..=.
T Consensus 234 ~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 234 QFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred HHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 899999999999999999988775533
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.3e-25 Score=241.59 Aligned_cols=179 Identities=9% Similarity=0.013 Sum_probs=141.1
Q ss_pred hhhhhcCCCeeEEEEECCEEEEeccccccccCHHHHHhhcCC-CCCCCceEEc--cCCCCCHHHHHHHHHHHhCceeecc
Q 010841 37 SWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVL--DDLPGGPEAFELAAKFCYGIAVDLT 113 (499)
Q Consensus 37 ~~~r~~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L--~~~pgga~afell~~FcYtg~i~it 113 (499)
--+|.+|.+|||++ +.|.+|++||.||||+|+|||+||+++ +|+. .+|.+ .+++ +++|+.+++|+|||+|.||
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~--~~~l~~lldy~YTg~l~it 89 (480)
T PHA02790 14 LALSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLD--IHSLTSIVIYSYTGKVYID 89 (480)
T ss_pred HHHHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcC--HHHHHHHHHhheeeeEEEe
Confidence 35788999999877 556799999999999999999999987 6764 35665 3776 8999999999999999999
Q ss_pred cchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhchhhHHHHHHHHHHccCCC
Q 010841 114 ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPK 193 (499)
Q Consensus 114 ~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidala~ka~~~~~ 193 (499)
.+||+.|+.||.+|||++ |++.|++||.+++.+ .||..+..+|+.|++ ++..++.-.-++.|+.
T Consensus 90 ~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l~~---------~NCl~i~~~A~~y~~-~~L~~~a~~fi~~nF~ 153 (480)
T PHA02790 90 SHNVVNLLRASILTSVEF------IIYTCINFILRDFRK---------EYCVECYMMGIEYGL-SNLLCHTKDFIAKHFL 153 (480)
T ss_pred cccHHHHHHHHHHhChHH------HHHHHHHHHHhhCCc---------chHHHHHHHHHHhCH-HHHHHHHHHHHHHhHH
Confidence 999999999999999997 999999999999976 467777777777665 2223332233355544
Q ss_pred CccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010841 194 GIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAK 269 (499)
Q Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Ya~k 269 (499)
.+. + .=+|||..|++ ..+|........+++.|.++++.|.+.
T Consensus 154 ~v~------------------------------~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~ 195 (480)
T PHA02790 154 ELE------------------------------D-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMK 195 (480)
T ss_pred HHh------------------------------c-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHh
Confidence 331 0 00367778886 567777777777899999999999884
No 4
>PHA02713 hypothetical protein; Provisional
Probab=99.92 E-value=3.1e-25 Score=242.94 Aligned_cols=183 Identities=13% Similarity=0.159 Sum_probs=149.0
Q ss_pred cchhhhhhcCCCeeEEEEEC-CEEEEeccccccccCHHHHHhhcCC-CCC-CCceEEccCCCCCHHHHHHHHHHHhCcee
Q 010841 34 RGQSWYVATDIPSDFLVQIG-DVNFHLHKYPLLSRSGKMNRLIYES-RDS-ELNKIVLDDLPGGPEAFELAAKFCYGIAV 110 (499)
Q Consensus 34 ~~~~~~r~~~~lcDV~l~V~-~~~F~lHK~vLas~S~YFr~lf~~~-~e~-~~~~I~L~~~pgga~afell~~FcYtg~i 110 (499)
++.+.+|.++.+|||+|.|+ |++|++||.||||+|+|||+||+++ +|. .+.+|+|++++ +++|+.+++|+||++
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~--~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFD--KDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCC--HHHHHHHHHHhcCCC-
Confidence 57788999999999999998 8999999999999999999999987 655 47899999997 899999999999997
Q ss_pred ecccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhchhhHHHHHHHHHHcc
Q 010841 111 DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190 (499)
Q Consensus 111 ~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidala~ka~~ 190 (499)
|+.+||+.|+.||++|||++ |++.|++||.+++.+ .||..+...|+.++... ..+....-++.
T Consensus 91 -i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~~---------~NCl~i~~~~~~~~~~~-L~~~a~~~i~~ 153 (557)
T PHA02713 91 -ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTNH---------DTCIYMYHRLYEMSHIP-IVKYIKRMLMS 153 (557)
T ss_pred -CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCCc---------cchHHHHHHHHhccchH-HHHHHHHHHHH
Confidence 79999999999999999997 999999999999976 35555555455544321 23333333445
Q ss_pred CCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHh-cCCChHHHHHHHHHHHHH
Q 010841 191 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKV-KGMRFELIGAAIMHYAAK 269 (499)
Q Consensus 191 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~-~g~~~~~I~~~l~~Ya~k 269 (499)
++..+. . .|||..|+.+.+..+|+.... ...+++.|.++++.|.+.
T Consensus 154 ~f~~v~------------------------------~---~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~ 200 (557)
T PHA02713 154 NIPTLI------------------------------T---TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEY 200 (557)
T ss_pred HHHHHh------------------------------C---ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhc
Confidence 543331 0 378889999999999998774 445788999999999884
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.88 E-value=2.6e-22 Score=217.40 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=143.1
Q ss_pred cCCCeeEEEEE--CCEEEEeccccccccCHHHHHhhcCCCCCCCceEEccCCCCCHHHHHHHHHHHhCceeecccchHhh
Q 010841 42 TDIPSDFLVQI--GDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISG 119 (499)
Q Consensus 42 ~~~lcDV~l~V--~~~~F~lHK~vLas~S~YFr~lf~~~~e~~~~~I~L~~~pgga~afell~~FcYtg~i~it~~NV~~ 119 (499)
++.+|||+|.| +|++|++||.+|+++|+|||+||+++.. +.+|+|++ + +++|+.+++|+|||++.|+.+||+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 68899999998 9999999999999999999999998732 67899988 5 8999999999999999999999999
Q ss_pred HHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhchhhHHHHHHHHHHccCCCCccccc
Q 010841 120 LRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAY 199 (499)
Q Consensus 120 L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidala~ka~~~~~~~~~~~ 199 (499)
|+.||++|||++ |++.|++||.+.+.. .+|..++.+|+.+++ .+..+.....++.++..+.
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l~~---------~nc~~~~~~a~~~~~-~~L~~~~~~~i~~nf~~v~--- 141 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKIIDD---------NNCIDIYRFSFFYGC-KKLYSAAYNYIRNNIELIY--- 141 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhCCH---------hHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHh---
Confidence 999999999997 999999999998854 577777788888764 2222222222333332221
Q ss_pred cCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010841 200 TGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAK 269 (499)
Q Consensus 200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Ya~k 269 (499)
. .+|+..|+.+.++.+|+.....-.+++.|.++++.|++.
T Consensus 142 -------~-----------------------~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~ 181 (534)
T PHA03098 142 -------N-----------------------DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTS 181 (534)
T ss_pred -------c-----------------------CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhc
Confidence 0 357889999999999988776666899999999999874
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.73 E-value=9.2e-18 Score=143.83 Aligned_cols=105 Identities=29% Similarity=0.390 Sum_probs=92.8
Q ss_pred hhhhhcCCCeeEEEEEC-CEEEEeccccccccCHHHHHhhcCC--CCCCCceEEccCCCCCHHHHHHHHHHHhCceeecc
Q 010841 37 SWYVATDIPSDFLVQIG-DVNFHLHKYPLLSRSGKMNRLIYES--RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLT 113 (499)
Q Consensus 37 ~~~r~~~~lcDV~l~V~-~~~F~lHK~vLas~S~YFr~lf~~~--~e~~~~~I~L~~~pgga~afell~~FcYtg~i~it 113 (499)
+.++.++.+||++|.|+ +++|++||.+|+++|+||++||+.. ++....+|.+++++ +++|+.+++|+|++++.++
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCC
Confidence 35778899999999999 7999999999999999999999987 33444578889997 8999999999999999999
Q ss_pred -cchHhhHHHhhcccccccccccCcHHHHHHHHHHHh
Q 010841 114 -ASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYV 149 (499)
Q Consensus 114 -~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~ 149 (499)
.+|+..++..|++|+|++ |.+.|++||.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999996 999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.62 E-value=6.8e-16 Score=124.71 Aligned_cols=89 Identities=30% Similarity=0.446 Sum_probs=81.3
Q ss_pred eEEEEECCEEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCCCCCHHHHHHHHHHHhCceeecccchHhhHHHhhc
Q 010841 47 DFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAE 125 (499)
Q Consensus 47 DV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~pgga~afell~~FcYtg~i~it~~NV~~L~~AA~ 125 (499)
||++.|+|++|++||.+|+++|+||++||.+. .+.....+.+.+++ +++|+.+++|+||+++.++..|+..++.+|+
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~--~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVS--PEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCC--HHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999976 44467789998876 8999999999999999999999999999999
Q ss_pred ccccccccccCcHHHHHH
Q 010841 126 YLEMTEDLEEGNLIFKTE 143 (499)
Q Consensus 126 ~LqM~e~~~~~nL~~~ce 143 (499)
+++|++ |++.|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999996 777774
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.38 E-value=2.9e-12 Score=135.22 Aligned_cols=188 Identities=19% Similarity=0.203 Sum_probs=150.2
Q ss_pred hcchhhhhhcCCCeeEEEEECC-----EEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCCCCCHHHHHHHHHHHh
Q 010841 33 LRGQSWYVATDIPSDFLVQIGD-----VNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCY 106 (499)
Q Consensus 33 ~~~~~~~r~~~~lcDV~l~V~~-----~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~pgga~afell~~FcY 106 (499)
+..+.-+..+...+||.+.|++ +.||+||.+|+..|.-|.+||.++ .+....+|+++|+. |.+|...++|+|
T Consensus 102 ~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdve--paaFl~~L~flY 179 (521)
T KOG2075|consen 102 RERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVE--PAAFLAFLRFLY 179 (521)
T ss_pred HHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcC--hhHhHHHHHHHh
Confidence 3344557778889999999983 799999999999999999999987 55557899999997 899999999999
Q ss_pred CceeecccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhchhhHHHHHHHH
Q 010841 107 GIAVDLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIVRRCSESIAW 186 (499)
Q Consensus 107 tg~i~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~iv~rcidala~ 186 (499)
+-.+.+.++||..++.||.-.-.+. |.+.|.+||+..+.+ .+.+..|-+|. .+.++-.+.++|++.|..
T Consensus 180 sdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~A---~lf~ep~Li~~c~e~id~ 248 (521)
T KOG2075|consen 180 SDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQRA---KLFDEPSLISICLEVIDK 248 (521)
T ss_pred cchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHHH---HhhcCHHHHHHHHHHhhh
Confidence 9999999999999999998777774 999999999999875 56666777773 445666789999998875
Q ss_pred HHccCCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCCChHHHHHHHHHH
Q 010841 187 KACANPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHY 266 (499)
Q Consensus 187 ka~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Y 266 (499)
..- +. + ..=||-|+-.+ .++|..|++... ..+++-.+.+++..|
T Consensus 249 ~~~-~a--l-------------------------------~~EGf~did~~-~dt~~evl~r~~-l~~~e~~lfeA~lkw 292 (521)
T KOG2075|consen 249 SFE-DA--L-------------------------------TPEGFCDIDST-RDTYEEVLRRDT-LEAREFRLFEAALKW 292 (521)
T ss_pred HHH-hh--h-------------------------------CccceeehhhH-HHHHHHHHhhcc-cchhHHHHHHHHHhh
Confidence 531 10 0 00145556555 888888887654 456788999999999
Q ss_pred HHH
Q 010841 267 AAK 269 (499)
Q Consensus 267 a~k 269 (499)
++-
T Consensus 293 ~~~ 295 (521)
T KOG2075|consen 293 AEA 295 (521)
T ss_pred ccC
Confidence 983
No 9
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.16 E-value=3.6e-11 Score=124.74 Aligned_cols=128 Identities=19% Similarity=0.271 Sum_probs=98.4
Q ss_pred CCCccccccccCC--chhhhhcchhhhhhcCCCeeEEEEECCEEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCC
Q 010841 15 GNGVLSSTKLSVK--TDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDL 91 (499)
Q Consensus 15 ~~~~m~~~kl~s~--~~~~~~~~~~~~r~~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~ 91 (499)
.+|-|..|.--+. .+-| .+....+.......||++.|+++.|++||.+||++|.|||+|+-++ .|+.+..|.|++-
T Consensus 13 ~~G~~E~d~t~~~~i~~~f-S~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t 91 (620)
T KOG4350|consen 13 EDGRVETDRTESAAISNNF-SQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET 91 (620)
T ss_pred ccccceeehhhhhhhccch-hHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc
Confidence 3555655533222 2233 2334567888889999999999999999999999999999999887 7888999999875
Q ss_pred CCCHHHHHHHHHHHhCceeecccchH---hhHHHhhcccccccccccCcHHHHHHHHHHHhhh
Q 010841 92 PGGPEAFELAAKFCYGIAVDLTASNI---SGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 151 (499)
Q Consensus 92 pgga~afell~~FcYtg~i~it~~NV---~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~ 151 (499)
. +++|..+++|+|||++.++...- .+.+.-|...++.+ |-.+..+||.+.+.
T Consensus 92 ~--~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL~ 146 (620)
T KOG4350|consen 92 N--SEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQ------LETAISEYLKEILK 146 (620)
T ss_pred c--HHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHc
Confidence 4 89999999999999999876443 33445555555554 88888899988774
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.01 E-value=4.7e-10 Score=107.51 Aligned_cols=133 Identities=23% Similarity=0.272 Sum_probs=108.2
Q ss_pred cCCchhhhhcch---hhhhhcCCCeeEEEEEC---CEEEEeccccccccCHHHHHhhcCCCCCCCceEEccCCCCCHHHH
Q 010841 25 SVKTDGFELRGQ---SWYVATDIPSDFLVQIG---DVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAF 98 (499)
Q Consensus 25 ~s~~~~~~~~~~---~~~r~~~~lcDV~l~V~---~~~F~lHK~vLas~S~YFr~lf~~~~e~~~~~I~L~~~pgga~af 98 (499)
.|.|++|-.|-. +-+.....++||++.++ ++.+++||+|||++|++.+ |.++.+....+..+.|.. +++|
T Consensus 43 eSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad--~Ea~ 118 (280)
T KOG4591|consen 43 ESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDAD--FEAF 118 (280)
T ss_pred cCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccC--HHHH
Confidence 467999988854 36777889999999998 5889999999999999765 344433334456667775 8999
Q ss_pred HHHHHHHhCceeecccchHh--hHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhch
Q 010841 99 ELAAKFCYGIAVDLTASNIS--GLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQI 176 (499)
Q Consensus 99 ell~~FcYtg~i~it~~NV~--~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~i 176 (499)
...++++||-+|++..+.+. .+...|..+|+.- |.++|+.=+...+ ...+|..+...||++..
T Consensus 119 ~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n~ 183 (280)
T KOG4591|consen 119 HTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELNA 183 (280)
T ss_pred HHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhhH
Confidence 99999999999998887664 5788899999875 8899998888877 45799999999999774
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.66 E-value=8.1e-08 Score=100.22 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=133.1
Q ss_pred hhhcCCCeeEEEEECCEEEEeccccccccCHHHHHhhcCC-CCCCCceEE--ccCCCCCHHHHHHHHHHHhCceeecccc
Q 010841 39 YVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIV--LDDLPGGPEAFELAAKFCYGIAVDLTAS 115 (499)
Q Consensus 39 ~r~~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~--L~~~pgga~afell~~FcYtg~i~it~~ 115 (499)
+..+|.-+||+|.+-|.+-++||.-| ..|+||..||.+. +|++...|+ |+|-.....+|..++.=.|..+|+|..+
T Consensus 63 lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~ 141 (488)
T KOG4682|consen 63 LFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLS 141 (488)
T ss_pred HHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHH
Confidence 55689999999999999999999876 4699999999987 777766554 5553344899999999999999999999
Q ss_pred hHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhchh---hHHHHHHHHHHccCC
Q 010841 116 NISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQIV---RRCSESIAWKACANP 192 (499)
Q Consensus 116 NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~iv---~rcidala~ka~~~~ 192 (499)
.|..++.||.+||++. |+++|.+-+.+.+.+ ++-......+..||+. ..|.+=+-...
T Consensus 142 dv~gvlAaA~~lqldg------l~qrC~evMie~lsp---------kta~~yYea~ckYgle~vk~kc~ewl~~nl---- 202 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDG------LIQRCGEVMIETLSP---------KTACGYYEAACKYGLESVKKKCLEWLLNNL---- 202 (488)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHHhcCh---------hhhhHhhhhhhhhhhHHHHHHHHHHHHHhh----
Confidence 9999999999999985 999999999999966 4566777888888862 22333222221
Q ss_pred CCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCCC-hHHHHHHHHHHHH
Q 010841 193 KGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGMR-FELIGAAIMHYAA 268 (499)
Q Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~~-~~~I~~~l~~Ya~ 268 (499)
|+... ..-|-.++++++..++.+=..--|. +=.++..+..|.-
T Consensus 203 ----~~i~~-----------------------------~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 203 ----MTIQN-----------------------------VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred ----Hhhhh-----------------------------HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 11110 1135678888888887766655555 3366666666554
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.37 E-value=5e-07 Score=100.86 Aligned_cols=138 Identities=18% Similarity=0.149 Sum_probs=101.6
Q ss_pred hcchhhhhhcCC----CeeEEEEECCEEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCCCCCHHHHHHHHHHHh-
Q 010841 33 LRGQSWYVATDI----PSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCY- 106 (499)
Q Consensus 33 ~~~~~~~r~~~~----lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~pgga~afell~~FcY- 106 (499)
+.-.|.+...+. .|||++. +|+.|+|||.+|++++.||..||... .|.....+. .+|-.++-++.++||.|
T Consensus 696 ~~~~N~l~lsdh~e~~d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~--~~p~~~e~m~ivLdylYs 772 (1267)
T KOG0783|consen 696 QLYNNFLVLSDHEETMDTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVN--LSPLTVEHMSIVLDYLYS 772 (1267)
T ss_pred HHhcCeeEecCCccceeEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhhccceee--cCcchHHHHHHHHHHHHc
Confidence 334444444433 3455544 78899999999999999999999875 555554444 45545899999999999
Q ss_pred Cceeec-----ccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHhhccchHHHHHHhc---hhh
Q 010841 107 GIAVDL-----TASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLKSCEKLSPWAENLQ---IVR 178 (499)
Q Consensus 107 tg~i~i-----t~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~sC~~L~~~Ae~~~---iv~ 178 (499)
+-+.++ ..+=+..++..|+.|=+++ |...|+.-|.+.+ .|++|..|+.+|..|+ +-.
T Consensus 773 ~d~~~~~k~~~~~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaamY~ak~L~~ 837 (1267)
T KOG0783|consen 773 DDKVELFKDLKESDFMFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAAMYHAKELYS 837 (1267)
T ss_pred cchHHHHhccchhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHHHhhHHHHHH
Confidence 444433 2233566788888888887 8889999888888 6789999999888875 667
Q ss_pred HHHHHHHHHH
Q 010841 179 RCSESIAWKA 188 (499)
Q Consensus 179 rcidala~ka 188 (499)
+|+|-|...+
T Consensus 838 ~C~dfic~N~ 847 (1267)
T KOG0783|consen 838 RCIDFICHNI 847 (1267)
T ss_pred HHHHHHHHhH
Confidence 8888776554
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.12 E-value=3.2e-06 Score=94.56 Aligned_cols=63 Identities=29% Similarity=0.527 Sum_probs=53.3
Q ss_pred CeeEEEEECCEEEEeccccccccCHHHHHhhcCCCCC-------------CCceEEccCCCCCHHHHHHHHHHHhCce
Q 010841 45 PSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDS-------------ELNKIVLDDLPGGPEAFELAAKFCYGIA 109 (499)
Q Consensus 45 lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~~e~-------------~~~~I~L~~~pgga~afell~~FcYtg~ 109 (499)
.-|||+.||+.-|++||++|+++|++||++|.....+ ..++|...++| |.+||+++.|+||..
T Consensus 558 ~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 558 FHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 6699999999999999999999999999999864211 12456678898 799999999999975
No 14
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.88 E-value=1.1e-05 Score=82.95 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=76.6
Q ss_pred EEEEECC------EEEEeccccccccCHHHHHhhcC---C-CCCCCceEEcc-CCCCCHHHHHHHHHHHhCceeecccch
Q 010841 48 FLVQIGD------VNFHLHKYPLLSRSGKMNRLIYE---S-RDSELNKIVLD-DLPGGPEAFELAAKFCYGIAVDLTASN 116 (499)
Q Consensus 48 V~l~V~~------~~F~lHK~vLas~S~YFr~lf~~---~-~e~~~~~I~L~-~~pgga~afell~~FcYtg~i~it~~N 116 (499)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. . .+...-.|..+ |+ .+|+.+++|+.+....||++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4666633 57999999999999999999954 2 22333334443 65 699999999999999999999
Q ss_pred HhhHHHhhcccccccccccCcHHHHHHHHHHHhh
Q 010841 117 ISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (499)
Q Consensus 117 V~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l 150 (499)
|+.++-.|+||||++ |++.|-.|+...+
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999997 9999999987766
No 15
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=96.73 E-value=0.00099 Score=56.32 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=61.6
Q ss_pred EEEEECCEEEEecccccc-ccCHHHHHhhcCC----CCCCCceEEccCCCCCHHHHHHHHHHHhC-ceeecc-cchHhhH
Q 010841 48 FLVQIGDVNFHLHKYPLL-SRSGKMNRLIYES----RDSELNKIVLDDLPGGPEAFELAAKFCYG-IAVDLT-ASNISGL 120 (499)
Q Consensus 48 V~l~V~~~~F~lHK~vLa-s~S~YFr~lf~~~----~e~~~~~I~L~~~pgga~afell~~FcYt-g~i~it-~~NV~~L 120 (499)
|+|.|||+.|..-+..|. -...+|.+|+... ......++-| | -.|+.|+.|++|.-+ +++... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-D--Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-D--RDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-S--S-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-c--cChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 4467999999853 1234456665 2 248999999999999 787764 6788899
Q ss_pred HHhhccccccc
Q 010841 121 RCAAEYLEMTE 131 (499)
Q Consensus 121 ~~AA~~LqM~e 131 (499)
+.-|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999986
No 16
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.65 E-value=0.0032 Score=54.60 Aligned_cols=79 Identities=16% Similarity=0.272 Sum_probs=60.1
Q ss_pred EEEEE-CCEEEEeccccccccCHHHHHhhcCC-CCC-CCceEEccCCCCCHHHHHHHHHHHhCce-----------e---
Q 010841 48 FLVQI-GDVNFHLHKYPLLSRSGKMNRLIYES-RDS-ELNKIVLDDLPGGPEAFELAAKFCYGIA-----------V--- 110 (499)
Q Consensus 48 V~l~V-~~~~F~lHK~vLas~S~YFr~lf~~~-~e~-~~~~I~L~~~pgga~afell~~FcYtg~-----------i--- 110 (499)
|+++- +|+.|.+.+.+. ..|+-++.|+.+. .+. ....|.|++++ +.+++.+++||+--+ +
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45544 689999999855 6899999999864 221 22578999998 699999999998311 1
Q ss_pred -----ecccchHhhHHHhhccccc
Q 010841 111 -----DLTASNISGLRCAAEYLEM 129 (499)
Q Consensus 111 -----~it~~NV~~L~~AA~~LqM 129 (499)
.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1566689999999999985
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.02 Score=57.06 Aligned_cols=94 Identities=18% Similarity=0.293 Sum_probs=75.8
Q ss_pred EEEEECCEEEEeccccccccCHHHHHhhcCCC--CCCC-ceEEccCCCCCHHHHHHHHHHHhCceeec--ccchHhhHHH
Q 010841 48 FLVQIGDVNFHLHKYPLLSRSGKMNRLIYESR--DSEL-NKIVLDDLPGGPEAFELAAKFCYGIAVDL--TASNISGLRC 122 (499)
Q Consensus 48 V~l~V~~~~F~lHK~vLas~S~YFr~lf~~~~--e~~~-~~I~L~~~pgga~afell~~FcYtg~i~i--t~~NV~~L~~ 122 (499)
|.+.|||+.|..+|.-|.-..++|+.|+...- +.+. .-|-| | -.|.=|+++++|+=.|.+.+ +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-D--RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-D--RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-c--CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 45899999999999999999999999998752 2222 23443 2 34799999999999776665 5567789999
Q ss_pred hhcccccccccccCcHHHHHHHHHHHhh
Q 010841 123 AAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (499)
Q Consensus 123 AA~~LqM~e~~~~~nL~~~ce~FL~~~l 150 (499)
=|+|..+++ |++.|..=+....
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~~ 105 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARLI 105 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhcc
Confidence 999999996 9999998777754
No 18
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.15 E-value=0.018 Score=58.51 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=63.8
Q ss_pred cCCCeeEEEEECCEEEEeccccccccCHHHHHhhcCCCCCC---CceEEccCCCCCHHHHHHHHHHHhCceee---cccc
Q 010841 42 TDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYESRDSE---LNKIVLDDLPGGPEAFELAAKFCYGIAVD---LTAS 115 (499)
Q Consensus 42 ~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~~~e~~---~~~I~L~~~pgga~afell~~FcYtg~i~---it~~ 115 (499)
...-.||-|....++|++||+.|+++|++|+-+.....+.. -..++..+|. -++|+..+.+.|+|+.- +.-.
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fq 204 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQ 204 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCc
Confidence 45567999999999999999999999999999887664432 2355666776 58999999999998764 3335
Q ss_pred hHhhHHHhhccccc
Q 010841 116 NISGLRCAAEYLEM 129 (499)
Q Consensus 116 NV~~L~~AA~~LqM 129 (499)
|+..|-.-.+-++-
T Consensus 205 n~diL~QL~edFG~ 218 (401)
T KOG2838|consen 205 NSDILEQLCEDFGC 218 (401)
T ss_pred hHHHHHHHHHhhCC
Confidence 56555444444433
No 19
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=94.93 E-value=0.067 Score=46.56 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=60.1
Q ss_pred CCEEEEeccccccccCHHHHHhhcCC---CCCCCceEEccCCCCCHHHHHHHHHHH-----hCc------eeecccchHh
Q 010841 53 GDVNFHLHKYPLLSRSGKMNRLIYES---RDSELNKIVLDDLPGGPEAFELAAKFC-----YGI------AVDLTASNIS 118 (499)
Q Consensus 53 ~~~~F~lHK~vLas~S~YFr~lf~~~---~e~~~~~I~L~~~pgga~afell~~Fc-----Ytg------~i~it~~NV~ 118 (499)
+|++|-+-|. .|.-|+-+|+|+.+. .+....+|.+.+|| +..++.+..|. |++ +++|-++=+.
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5789988665 677799999999963 46677899999998 89999998775 443 3568889999
Q ss_pred hHHHhhcccc
Q 010841 119 GLRCAAEYLE 128 (499)
Q Consensus 119 ~L~~AA~~Lq 128 (499)
+|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999996
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.57 E-value=0.12 Score=40.76 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=42.7
Q ss_pred EEEEE-CCEEEEeccccccccCHHHHHhhcCCCCCCCceEEccCCCCCHHHHHHHHHHHh
Q 010841 48 FLVQI-GDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCY 106 (499)
Q Consensus 48 V~l~V-~~~~F~lHK~vLas~S~YFr~lf~~~~e~~~~~I~L~~~pgga~afell~~FcY 106 (499)
|+|+- +|+.|.+.+.+ |-.|+.++.|+.+...... .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 68999998875 4579999999986532222 79999998 799999999997
No 21
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.13 Score=48.66 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=70.6
Q ss_pred CCEEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCCCCCHHHHHHHHHHHhCcee---------------------
Q 010841 53 GDVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAV--------------------- 110 (499)
Q Consensus 53 ~~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~pgga~afell~~FcYtg~i--------------------- 110 (499)
+|+.|..-.. .|-.|.-++.++.+. -......|.|+.|. +.+|.+|++|||--+-
T Consensus 13 DG~~f~ve~~-~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEE-VARQSQTISAHMIEDGCADENDPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHH-HHHHhHHHHHHHHHcCCCccCCccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 6888988666 566799999988764 22222578898887 6999999999996221
Q ss_pred ----ecccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhc
Q 010841 111 ----DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLS 152 (499)
Q Consensus 111 ----~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~ 152 (499)
.+...++..|.-||.||+|.. |++.||......+-.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mikg 129 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMIKG 129 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHHcc
Confidence 134468899999999999995 999999999888743
No 22
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.62 E-value=0.82 Score=47.40 Aligned_cols=111 Identities=15% Similarity=0.240 Sum_probs=80.5
Q ss_pred hhcCCCeeEEEEECCEEEEeccccccccCH-HHHHhhcCC----CCCCCceEEc-cCCCCCHHHHHHHHHHHhCceeecc
Q 010841 40 VATDIPSDFLVQIGDVNFHLHKYPLLSRSG-KMNRLIYES----RDSELNKIVL-DDLPGGPEAFELAAKFCYGIAVDLT 113 (499)
Q Consensus 40 r~~~~lcDV~l~V~~~~F~lHK~vLas~S~-YFr~lf~~~----~e~~~~~I~L-~~~pgga~afell~~FcYtg~i~it 113 (499)
+..|-.--++..|++..|-.-+++|-+.-. -+-.||..+ ..++..+.+. .++ +...|..+++|--+|.|.--
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 555666678999999999999999888633 345677643 2344567777 456 38999999999888888764
Q ss_pred c-chHhhHHHhhccccccc---------------ccccCcHHHHHHHHHHHhhhc
Q 010841 114 A-SNISGLRCAAEYLEMTE---------------DLEEGNLIFKTEAFLSYVVLS 152 (499)
Q Consensus 114 ~-~NV~~L~~AA~~LqM~e---------------~~~~~nL~~~ce~FL~~~l~~ 152 (499)
+ -.|-.|+.|.+||-++= +++.+.-.++.+.||++.++|
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~ILP 222 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIILP 222 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4 57889999999998872 233334566777777777765
No 23
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.45 E-value=0.33 Score=49.55 Aligned_cols=58 Identities=24% Similarity=0.333 Sum_probs=40.5
Q ss_pred EEEeccccccccCHHHHHhhcC----CCC------CCCceEEccCCCCCHHHHHH-HHHHHhCceeeccc
Q 010841 56 NFHLHKYPLLSRSGKMNRLIYE----SRD------SELNKIVLDDLPGGPEAFEL-AAKFCYGIAVDLTA 114 (499)
Q Consensus 56 ~F~lHK~vLas~S~YFr~lf~~----~~e------~~~~~I~L~~~pgga~afel-l~~FcYtg~i~it~ 114 (499)
++.+||.+.+++|++||.++.. +.| ....+|.+...- =|.+|.. ++.|+||-+++++.
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlSl 330 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLSL 330 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchhh
Confidence 5899999999999999998752 111 234567775421 1467765 46789998887643
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=82.83 E-value=1.7 Score=46.37 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=68.6
Q ss_pred EEEEeccccccccCHHHHHhhcCC-CCCC-Cce---EEccCCCCCHHHHHHHHHHHhCceeecccchHhhHHHhhccccc
Q 010841 55 VNFHLHKYPLLSRSGKMNRLIYES-RDSE-LNK---IVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRCAAEYLEM 129 (499)
Q Consensus 55 ~~F~lHK~vLas~S~YFr~lf~~~-~e~~-~~~---I~L~~~pgga~afell~~FcYtg~i~it~~NV~~L~~AA~~LqM 129 (499)
..+|+|++++. +..||+.||++. .|+. +.+ ..++.+. ....|.+++|.|+-+-+|-++-...++--|..|-+
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 45999999775 678999999987 5532 222 2334443 57889999999999999999888888888888877
Q ss_pred ccccccCcHHHHHHHHHHHhhhcc-hhhHHHHHhhccc
Q 010841 130 TEDLEEGNLIFKTEAFLSYVVLSS-WRDSIIVLKSCEK 166 (499)
Q Consensus 130 ~e~~~~~nL~~~ce~FL~~~l~~s-w~d~i~~L~sC~~ 166 (499)
..+. -|...+..-+.+..-.. --+.+.+++.|-+
T Consensus 378 ~~dr---~Lkt~as~~itq~~e~id~y~V~dIl~~~wd 412 (516)
T KOG0511|consen 378 ADDR---LLKTAASAEITQWLELIDMYGVLDILEYCWD 412 (516)
T ss_pred hhhh---hhhhhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6432 13344444444332210 0013455666644
No 25
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=79.41 E-value=4 Score=44.19 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=60.4
Q ss_pred EEEEECCEEEEeccccccccC--HHHHHhhcCC--CCCCCc-eEEccCCCCCHHHHHHHHHHHhCceeecccchHhhHHH
Q 010841 48 FLVQIGDVNFHLHKYPLLSRS--GKMNRLIYES--RDSELN-KIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGLRC 122 (499)
Q Consensus 48 V~l~V~~~~F~lHK~vLas~S--~YFr~lf~~~--~e~~~~-~I~L~~~pgga~afell~~FcYtg~i~it~~NV~~L~~ 122 (499)
|.+.|||+.|.--+.-|+... .+|-+|++.. ...... -|-| +-.|+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~~~g~~~~~llh 89 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLDASGVFPERLLH 89 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCCCccCchhhhhh
Confidence 578999999999999888765 6899999754 122222 2333 2347999999999999999995544444444
Q ss_pred -hhccccccc
Q 010841 123 -AAEYLEMTE 131 (499)
Q Consensus 123 -AA~~LqM~e 131 (499)
=|.|.+++.
T Consensus 90 dEA~fYGl~~ 99 (465)
T KOG2714|consen 90 DEAMFYGLTP 99 (465)
T ss_pred hhhhhcCcHH
Confidence 899999986
No 26
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=77.46 E-value=2.9 Score=34.42 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=33.0
Q ss_pred cccccCChhHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 010841 232 EDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAK 269 (499)
Q Consensus 232 eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Ya~k 269 (499)
+++..||.+.+..++....-...+++.+.++++.|++.
T Consensus 35 ~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~ 72 (101)
T smart00875 35 EEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKH 72 (101)
T ss_pred cHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHC
Confidence 67889999999999988877666788999999999885
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=72.74 E-value=2.6 Score=34.83 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=28.6
Q ss_pred ecccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhh
Q 010841 111 DLTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 151 (499)
Q Consensus 111 ~it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~ 151 (499)
.++...+..|+.||.||+|.. |++.|+.++...+.
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMIK 44 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHhc
Confidence 346678999999999999996 99999999998874
No 28
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=72.69 E-value=2.1 Score=35.83 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=31.4
Q ss_pred cccccCChhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 010841 232 EDVSILRIDHFVRVVTAIKVKGMRFELIGAAIMHYAAKWL 271 (499)
Q Consensus 232 eDl~~L~~~~f~rvI~am~~~g~~~~~I~~~l~~Ya~k~l 271 (499)
+++..||++.+..++..-.-...++..|.++++.|++...
T Consensus 35 ~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~ 74 (103)
T PF07707_consen 35 DEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNP 74 (103)
T ss_dssp HHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTH
T ss_pred hhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCH
Confidence 5789999999999999766555678899999999988643
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=72.09 E-value=5.6 Score=40.16 Aligned_cols=89 Identities=18% Similarity=0.056 Sum_probs=66.4
Q ss_pred CEEEEeccccccccCHHHHHhhcCC-CCCCCceEEccCCCCCHHHHHHHHHHHhCceeecccchHh---hHHHhhccccc
Q 010841 54 DVNFHLHKYPLLSRSGKMNRLIYES-RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNIS---GLRCAAEYLEM 129 (499)
Q Consensus 54 ~~~F~lHK~vLas~S~YFr~lf~~~-~e~~~~~I~L~~~pgga~afell~~FcYtg~i~it~~NV~---~L~~AA~~LqM 129 (499)
+..+..|+.+++++|+-|+.|+... .+.....+.+.+.. ++.++.+..|.|...-.-+..++. .++++|...+-
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~--~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEK--PEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccc--hhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 4559999999999999999999865 33334445666654 688999999999865544555554 67777777666
Q ss_pred ccccccCcHHHHHHHHHHHhh
Q 010841 130 TEDLEEGNLIFKTEAFLSYVV 150 (499)
Q Consensus 130 ~e~~~~~nL~~~ce~FL~~~l 150 (499)
.. |...|...|.+.+
T Consensus 187 ~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 RH------LKLACMPVLLSLI 201 (297)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 64 8899999888866
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=69.41 E-value=0.99 Score=48.06 Aligned_cols=95 Identities=18% Similarity=-0.002 Sum_probs=60.6
Q ss_pred hhhcchhhhhhcCCCe--eEEEEE-CCEEEEeccccccccCHHHHH-hhcCCCCCCCceEE-ccCCCCCHHHHHHHHHHH
Q 010841 31 FELRGQSWYVATDIPS--DFLVQI-GDVNFHLHKYPLLSRSGKMNR-LIYESRDSELNKIV-LDDLPGGPEAFELAAKFC 105 (499)
Q Consensus 31 ~~~~~~~~~r~~~~lc--DV~l~V-~~~~F~lHK~vLas~S~YFr~-lf~~~~e~~~~~I~-L~~~pgga~afell~~Fc 105 (499)
+-..-++-++.+++-| |++..+ +|..|-+||+.|+++|.||.. +..-.. ...+|+ +.-+ +.+|+..++|.
T Consensus 133 ~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~~~v~---~~~f~~flk~l 207 (516)
T KOG0511|consen 133 PAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEAHRVI---LSAFSPFLKQL 207 (516)
T ss_pred cchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhhhhhh---HhhhhHHHHHH
Confidence 3344566788888733 888876 578999999999999877654 332221 123442 3334 68999999999
Q ss_pred hCceeecccchHhhHHHhhcccccc
Q 010841 106 YGIAVDLTASNISGLRCAAEYLEMT 130 (499)
Q Consensus 106 Ytg~i~it~~NV~~L~~AA~~LqM~ 130 (499)
|-..-.+-+.--.+|+.-..-++..
T Consensus 208 yl~~na~~~~qynallsi~~kF~~e 232 (516)
T KOG0511|consen 208 YLNTNAEWKDQYNALLSIEVKFSKE 232 (516)
T ss_pred HHhhhhhhhhHHHHHHhhhhhccHH
Confidence 9653333333334555555555554
No 31
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=66.57 E-value=19 Score=36.27 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=66.6
Q ss_pred EEEEECCEEEEecccccccc--CHHHHHhhcCC----CCCCCceEEccCCCCCHHHHHHHHHHHhCceee-cccchHhhH
Q 010841 48 FLVQIGDVNFHLHKYPLLSR--SGKMNRLIYES----RDSELNKIVLDDLPGGPEAFELAAKFCYGIAVD-LTASNISGL 120 (499)
Q Consensus 48 V~l~V~~~~F~lHK~vLas~--S~YFr~lf~~~----~e~~~~~I~L~~~pgga~afell~~FcYtg~i~-it~~NV~~L 120 (499)
|.+.++|+.|.--..-|.-+ =..+-+||.+. ++.++.-+-|. = +|.-||-+++|.--|.|. .+.-|+..+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lID-R--sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLID-R--SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEc-c--CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 56789999999988888877 34688999863 23333344443 2 368999999999988764 567899999
Q ss_pred HHhhcccccccccccCcHHHHHHH
Q 010841 121 RCAAEYLEMTEDLEEGNLIFKTEA 144 (499)
Q Consensus 121 ~~AA~~LqM~e~~~~~nL~~~ce~ 144 (499)
+.+|.|+|+-. |++.-++
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999985 6655555
No 32
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=52.62 E-value=54 Score=31.71 Aligned_cols=97 Identities=18% Similarity=0.101 Sum_probs=68.8
Q ss_pred eeEEEEECCEEEEeccccccccC-HHHHHhhcCCCC----CCCceEEccCCCCCHHHHHHHHHHHhCceeecccchHhhH
Q 010841 46 SDFLVQIGDVNFHLHKYPLLSRS-GKMNRLIYESRD----SELNKIVLDDLPGGPEAFELAAKFCYGIAVDLTASNISGL 120 (499)
Q Consensus 46 cDV~l~V~~~~F~lHK~vLas~S-~YFr~lf~~~~e----~~~~~I~L~~~pgga~afell~~FcYtg~i~it~~NV~~L 120 (499)
.=|.+.|||+.|.--|.-|.--+ .++.++.....+ .+..---|-| -+|.-|.-+++|.--|++.++.-.-+.+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlID--RDP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLID--RDPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEec--cCcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 33567899999999999999887 555666654322 2222223323 3378999999999999999999666678
Q ss_pred HHhhcccccccccccCcHHHHHHHHHHHhh
Q 010841 121 RCAAEYLEMTEDLEEGNLIFKTEAFLSYVV 150 (499)
Q Consensus 121 ~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l 150 (499)
+.-|+|...+. |++...+-+.+..
T Consensus 99 L~EAefyn~~~------li~likd~i~dRd 122 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQDRD 122 (210)
T ss_pred chhhhccCChH------HHHHHHHHHHHHh
Confidence 99999999885 6665555554433
No 33
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=50.29 E-value=57 Score=30.25 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=64.0
Q ss_pred EECCEEEEeccccccccCHHHHHhhcCCCCCCCceEEccCCCCCHHHHHHHHHHHhCce---------eec---------
Q 010841 51 QIGDVNFHLHKYPLLSRSGKMNRLIYESRDSELNKIVLDDLPGGPEAFELAAKFCYGIA---------VDL--------- 112 (499)
Q Consensus 51 ~V~~~~F~lHK~vLas~S~YFr~lf~~~~e~~~~~I~L~~~pgga~afell~~FcYtg~---------i~i--------- 112 (499)
-.+|+.|.+.+. .|-+|-.++.|+....+++- .+..+.+. +..|..+.+||---+ ++|
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n~-p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~w 83 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACNY-PIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFW 83 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccCC-CCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccHH
Confidence 457899999776 68889999998876533322 23445554 789999999996211 111
Q ss_pred -------ccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhh
Q 010841 113 -------TASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVL 151 (499)
Q Consensus 113 -------t~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~ 151 (499)
...-...+.-||.||++.. |++.||.-..+.+-
T Consensus 84 dr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemir 123 (158)
T COG5201 84 DRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMIR 123 (158)
T ss_pred HHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHHc
Confidence 2234556778999999986 89999998888773
No 34
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=48.74 E-value=53 Score=36.33 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=68.9
Q ss_pred cccccccCCchhhhhcchhhhhhcCCCeeEEEEECCEEEEecccccccc-CHHHHHhhcCC-C----------CCCCceE
Q 010841 19 LSSTKLSVKTDGFELRGQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSR-SGKMNRLIYES-R----------DSELNKI 86 (499)
Q Consensus 19 m~~~kl~s~~~~~~~~~~~~~r~~~~lcDV~l~V~~~~F~lHK~vLas~-S~YFr~lf~~~-~----------e~~~~~I 86 (499)
|.....|..|+..+.. .....-|+|.|||.++.+-+..|... =.++.++.... . +...++.
T Consensus 11 ~~~~~~~~~~~~~~~~-------~~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~Ey 83 (477)
T KOG3713|consen 11 RDVPVGGPEPEGIIRD-------GALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEY 83 (477)
T ss_pred ccccccCCCCccccCC-------CCcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCee
Confidence 4555566666665543 34455789999999999988877763 22334443311 0 1223444
Q ss_pred EccCCCCCHHHHHHHHHHHhCceeecccchHhh--HHHhhcccccccccccCcHHHHHHH
Q 010841 87 VLDDLPGGPEAFELAAKFCYGIAVDLTASNISG--LRCAAEYLEMTEDLEEGNLIFKTEA 144 (499)
Q Consensus 87 ~L~~~pgga~afell~~FcYtg~i~it~~NV~~--L~~AA~~LqM~e~~~~~nL~~~ce~ 144 (499)
-+ +-.|.+|..+++|-+||++..- .+|.. ...=-+|-++++ +-++.||.
T Consensus 84 fF---DR~P~~F~~Vl~fYrtGkLH~p-~~vC~~~F~eEL~yWgI~~-----~~le~CC~ 134 (477)
T KOG3713|consen 84 FF---DRHPGAFAYVLNFYRTGKLHVP-ADVCPLSFEEELDYWGIDE-----AHLESCCW 134 (477)
T ss_pred ee---ccChHHHHHHHHHHhcCeeccc-cccchHHHHHHHHHhCCCh-----hhhhHHhH
Confidence 44 3347899999999999999864 34444 333447788876 34556654
No 35
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=36.02 E-value=24 Score=34.95 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=23.1
Q ss_pred HHhcC--CCcccCCCchhHHHHHhhhhcCC
Q 010841 469 AEALP--ESARTCDDGLYRAIDSYLKVISN 496 (499)
Q Consensus 469 ae~lP--d~aR~~~DgLYRAIDiYLKaHp~ 496 (499)
.+-+| +..+..-+|=|+||.-|||.||+
T Consensus 183 v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~ 212 (237)
T COG3510 183 VNDLPGPVLPWRFGGGPYEAVEAYLREFPQ 212 (237)
T ss_pred ccCCCCcccchhcCCChHHHHHHHHHhCCc
Confidence 34566 66667799999999999999994
No 36
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=35.99 E-value=22 Score=28.21 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=14.0
Q ss_pred chhHHHHHhhhhcCC
Q 010841 482 GLYRAIDSYLKVISN 496 (499)
Q Consensus 482 gLYRAIDiYLKaHp~ 496 (499)
-||+|+.-||+.||+
T Consensus 9 ~L~~~m~~fie~hP~ 23 (57)
T PF10929_consen 9 DLHQAMKDFIETHPN 23 (57)
T ss_pred HHHHHHHHHHHcCCC
Confidence 589999999999997
No 37
>PF01692 Paramyxo_C: Paramyxovirus non-structural protein c; InterPro: IPR002608 This family consist of the C proteins (C', C, Y1, Y2) found in the Paramyxovirinae, e.g. Human parainfluenza virus 3, and Sendai virus. The C proteins effect viral RNA synthesis having both a positive and negative effect during the course of infection []. The paramyxovirinae have a negative-strand ssRNA genome of 15.3 kb from which six mRNAs are transcribed, five of these are monocistronic. The P/C mRNA is polycistronic and has two overlapping open reading frames P and C, C encodes the nested C proteins C', C, Y1 and Y2 [].; GO: 0030683 evasion by virus of host immune response
Probab=26.57 E-value=1.3e+02 Score=28.97 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhCceeecccchHhhHH--------HhhcccccccccccCcHHHHHHHHHHHhhhcchhhHHHHHh-hcc
Q 010841 95 PEAFELAAKFCYGIAVDLTASNISGLR--------CAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSIIVLK-SCE 165 (499)
Q Consensus 95 a~afell~~FcYtg~i~it~~NV~~L~--------~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw~d~i~~L~-sC~ 165 (499)
-..+|.+++=+|++.+-=...-+..|+ .|+..|+|.++..+--+.=++|.+|..-+ +.-++-+...+ -.+
T Consensus 97 k~~iE~LI~klY~~~lGEE~~Q~~~LRiWameesPEs~kIl~M~~~~R~~~i~MK~ERWiRTLi-RGk~~~Lk~FQ~RYe 175 (204)
T PF01692_consen 97 KHMIEMLINKLYREPLGEEAVQTVYLRIWAMEESPESAKILQMRPDIRDQLITMKTERWIRTLI-RGKCDNLKDFQKRYE 175 (204)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhccChhhHHHHhcChHHHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHH
Confidence 467999999999987633333333333 68899999998766667778888888744 44444454444 345
Q ss_pred chHHHHHH
Q 010841 166 KLSPWAEN 173 (499)
Q Consensus 166 ~L~~~Ae~ 173 (499)
++.|+-..
T Consensus 176 EV~pyL~~ 183 (204)
T PF01692_consen 176 EVHPYLMQ 183 (204)
T ss_pred HHhHHHHH
Confidence 55554444
No 38
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=24.38 E-value=1.1e+02 Score=21.23 Aligned_cols=34 Identities=32% Similarity=0.329 Sum_probs=28.7
Q ss_pred cCChhHHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Q 010841 236 ILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAK 269 (499)
Q Consensus 236 ~L~~~~f~rvI~am~~~g~-~~~~I~~~l~~Ya~k 269 (499)
.||.+.++++=...+..|+ ..+.|-.+|..|+.+
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l~~ 39 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYLER 39 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 5778888888888889998 577999999999864
No 39
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=23.55 E-value=2.1e+02 Score=28.72 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=58.4
Q ss_pred EEEEECCEEEEecccccccc-CHHHHHhhcCC---CCCCCceEEc-cCCCCCHHHHHHHHHHHhCceeeccc--chHhhH
Q 010841 48 FLVQIGDVNFHLHKYPLLSR-SGKMNRLIYES---RDSELNKIVL-DDLPGGPEAFELAAKFCYGIAVDLTA--SNISGL 120 (499)
Q Consensus 48 V~l~V~~~~F~lHK~vLas~-S~YFr~lf~~~---~e~~~~~I~L-~~~pgga~afell~~FcYtg~i~it~--~NV~~L 120 (499)
|.|.|||+.|.--..-|... -..+.+||+.. .........| .| ...|.-+++|.=|..+.+.. .++..|
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRD----G~lFRyvL~~LRt~~l~lpe~f~e~~~L 86 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRD----GFLFRYVLDYLRTKALLLPEDFAEVERL 86 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCC----cchHHHHHHHhcccccccchhhhhHHHH
Confidence 57889999887544434433 56778888842 1223345555 33 26999999999997777776 899999
Q ss_pred HHhhccccccc
Q 010841 121 RCAAEYLEMTE 131 (499)
Q Consensus 121 ~~AA~~LqM~e 131 (499)
..=|+|.|++.
T Consensus 87 ~rEA~f~~l~~ 97 (221)
T KOG2723|consen 87 VREAEFFQLEA 97 (221)
T ss_pred HHHHHHHcccc
Confidence 99999999985
No 40
>PHA00617 ribbon-helix-helix domain containing protein
Probab=23.10 E-value=1.3e+02 Score=25.49 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=32.7
Q ss_pred ccCChhHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Q 010841 235 SILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAAKW 270 (499)
Q Consensus 235 ~~L~~~~f~rvI~am~~~g~-~~~~I~~~l~~Ya~k~ 270 (499)
..||.++.+++-.-.+..|. +++.|-++|..|...|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 68999999999999999998 7889999999999876
No 41
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=22.23 E-value=57 Score=35.58 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=68.0
Q ss_pred cccchHhhHHHhhcccccccccccCcHHHHHHHHHHHhhhcch-hhHHHHHhhccchHHHHHHhchhhHHHHHHHHHHcc
Q 010841 112 LTASNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSW-RDSIIVLKSCEKLSPWAENLQIVRRCSESIAWKACA 190 (499)
Q Consensus 112 it~~NV~~L~~AA~~LqM~e~~~~~nL~~~ce~FL~~~l~~sw-~d~i~~L~sC~~L~~~Ae~~~iv~rcidala~ka~~ 190 (499)
+.-+||..++-||.+.|+++ |.+.|..|+......-. .+++ ..|..-+-+--+...|..|.-.|+..
T Consensus 145 L~~~NvCmifdaA~ly~l~~------Lt~~C~mfmDrnA~~lL~~~sF------n~LSk~sL~e~l~RDsFfApE~~IFl 212 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTD------LTDYCMMFMDRNADQLLEDPSF------NRLSKDSLKELLARDSFFAPELKIFL 212 (620)
T ss_pred HcccceeeeeeHHHHhcchH------HHHHHHHHHhcCHHhhhcCcch------hhhhHHHHHHHHhhhcccchHHHHHH
Confidence 57799999999999999997 99999999987542100 0011 11111111101112222232223211
Q ss_pred CCCCccccccCCCCCCCCCCcCcCCCCCCCCCCCCCCCccccccccCChhHHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Q 010841 191 NPKGIRWAYTGRPPKISSPKWNDMKDSSPSRSQPVPPDWWFEDVSILRIDHFVRVVTAIKVKGM-RFELIGAAIMHYAA 268 (499)
Q Consensus 191 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvI~am~~~g~-~~~~I~~~l~~Ya~ 268 (499)
- ..+|.--. ++ .. .+ -.=.+..||+-..+.++..++..|+ +|+.|-.++..-.+
T Consensus 213 A--v~~W~~~N-sk-----e~--------~k--------~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~vrs~ 267 (620)
T KOG4350|consen 213 A--VRSWHQNN-SK-----EA--------SK--------VLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIEVRSQ 267 (620)
T ss_pred H--HHHHHhcC-ch-----hh--------HH--------HHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHHhhcc
Confidence 0 01222100 00 00 00 0224578899999999999999997 99999888865444
No 42
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=22.15 E-value=90 Score=34.49 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=42.4
Q ss_pred hHHHHHHhhhhhhhhccCCC----------------CCChhHHHHHHHhcCCCcc----cCC-Cc---------hhHHHH
Q 010841 439 AKMRVARLVDGYLTEVARDR----------------NLSLTKFQVLAEALPESAR----TCD-DG---------LYRAID 488 (499)
Q Consensus 439 ~~~kVakLvD~YLaEVA~D~----------------nL~~~KF~~Lae~lPd~aR----~~~-Dg---------LYRAID 488 (499)
...+|.+.+-.+|.+++.+| +|++-.|..|+|-.-++.+ .+. |. +|||+|
T Consensus 344 D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavd 423 (523)
T KOG2016|consen 344 DALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVD 423 (523)
T ss_pred hHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHH
Confidence 45689999999999999984 4556666667776554444 333 34 699999
Q ss_pred HhhhhcCC
Q 010841 489 SYLKVISN 496 (499)
Q Consensus 489 iYLKaHp~ 496 (499)
.||+.|-.
T Consensus 424 rfl~~~gk 431 (523)
T KOG2016|consen 424 RFLKEKGK 431 (523)
T ss_pred HHHHHhcC
Confidence 99998854
No 43
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=21.27 E-value=55 Score=28.16 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=20.6
Q ss_pred hcCCCcccCCCchhHHHHHhhhhcCC
Q 010841 471 ALPESARTCDDGLYRAIDSYLKVISN 496 (499)
Q Consensus 471 ~lPd~aR~~~DgLYRAIDiYLKaHp~ 496 (499)
.+|++.......+|+|+.+||.+.+.
T Consensus 29 ~I~E~~g~~~N~ly~a~~~YL~s~~s 54 (98)
T PF14363_consen 29 VIPEFDGLSRNELYDAAQAYLSSKIS 54 (98)
T ss_pred EEEeCCCccccHHHHHHHHHHhhccC
Confidence 45566667788999999999988754
No 44
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.13 E-value=48 Score=27.82 Aligned_cols=16 Identities=31% Similarity=0.300 Sum_probs=13.9
Q ss_pred CchhHHHHHhhhhcCC
Q 010841 481 DGLYRAIDSYLKVISN 496 (499)
Q Consensus 481 DgLYRAIDiYLKaHp~ 496 (499)
-+||-||+-||+.|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 3799999999999963
No 45
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=20.96 E-value=21 Score=40.48 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=32.8
Q ss_pred chhhhhhcCCCeeEEEEECCEEEEeccccccccCHHHHHhhcC
Q 010841 35 GQSWYVATDIPSDFLVQIGDVNFHLHKYPLLSRSGKMNRLIYE 77 (499)
Q Consensus 35 ~~~~~r~~~~lcDV~l~V~~~~F~lHK~vLas~S~YFr~lf~~ 77 (499)
+.+..|++..+||+++.|..+.|..|+ +|.||..-.-+
T Consensus 4 ~~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G 41 (604)
T KOG3863|consen 4 SLNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVG 41 (604)
T ss_pred cccccccccccchhHHHHhccccccee-----ccchhhhhhcc
Confidence 456778999999999999999999999 89999875543
No 46
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=20.88 E-value=73 Score=27.81 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=25.4
Q ss_pred chhHHHHHHhhhhhhhhccCCCCCChhH-HHH-HHHhc
Q 010841 437 TSAKMRVARLVDGYLTEVARDRNLSLTK-FQV-LAEAL 472 (499)
Q Consensus 437 ~~~~~kVakLvD~YLaEVA~D~nL~~~K-F~~-Lae~l 472 (499)
......+|++++.||..-+.+|. +|.| +.. +.+.+
T Consensus 33 ~k~~l~~g~~i~e~LkQ~~~~~~-~~~~q~~~~~~~~~ 69 (113)
T PF00306_consen 33 DKLILERGRRIREFLKQNAFDPV-PLEKQYVMILEETI 69 (113)
T ss_dssp HHHHHHHHHHHHHHT-BSTTTTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC-cCcchhhhHHHHHH
Confidence 34568999999999999999999 6666 444 44333
Done!