BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010842
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 442 bits (1136), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/491 (43%), Positives = 306/491 (62%), Gaps = 23/491 (4%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A EFR++ +MVD++A+Y + IE V VEPG+LR +P +AP P++FE I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
++ I+PG+THW SP FFA+FP S L +MLC +GF+W ASPA TELE V+MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 137 WLATMLKLPKTFM--FSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN--------M 186
WL ML+LPK F+ +G GGGVIQ + S++ LV L+AAR + + + A + M
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 187 HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
KLV Y SDQ HS+ + + GV ++A+P+ D NF++ L+ A+E D AGL+
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGV---KLKAIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
P F+ AT+GTT+ + DN+ + + N+ IW+HVDAAYAGSA ICPEFRH LNG+E D
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 307 SFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGR 366
SF+F+PHKWLL DC +WVK+ L A DP YLK+ +S + D++ WQ+ GR
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGR 355
Query: 367 RFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
RF+SL++W V R YGV LQ++IR ++L+ FE V+ DPRFEI V LVCFRL
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLK- 414
Query: 427 YPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
+ +N LL +NS +++L + ++LRFA+ + + HV AWE I
Sbjct: 415 -------GSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHI 467
Query: 487 MEGADRLFKGS 497
E A + +
Sbjct: 468 KELAADVLRAE 478
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/490 (43%), Positives = 305/490 (62%), Gaps = 23/490 (4%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A EFR++ +MVD++A+Y + IE V VEPG+LR +P +AP P++FE I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
++ I+PG+THW SP FFA+FP S L +MLC +GF+W ASPA TELE V+MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 137 WLATMLKLPKTFM--FSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN--------M 186
WL ML+LPK F+ +G GGGVIQ + S++ LV L+AAR + + + A + M
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 187 HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
KLV Y SDQ HS+ + + GV ++A+P+ D NF++ L+ A+E D AGL+
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGV---KLKAIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
P F+ AT+GTT+ + DN+ + + N+ IW+HVDAAYAGSA ICPEFRH LNG+E D
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 307 SFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGR 366
SF+F+PH WLL DC +WVK+ L A DP YLK+ +S + D++ WQ+ GR
Sbjct: 296 SFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGR 355
Query: 367 RFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
RF+SL++W V R YGV LQ++IR ++L+ FE V+ DPRFEI V LVCFRL
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDPRFEICVEVILGLVCFRLK- 414
Query: 427 YPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
+ +N LL +NS +++L + ++LRFA+ + + HV AWE I
Sbjct: 415 -------GSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQRAWEHI 467
Query: 487 MEGADRLFKG 496
E A + +
Sbjct: 468 KELAADVLRA 477
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/480 (43%), Positives = 300/480 (62%), Gaps = 23/480 (4%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A +FR++ +MVD++ADY + IE V V+PG+LR +P +AP P++FE IL+DV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
++ I+PG+THW SP FFA+FP S L +MLC +GF+W ASPA TELE V+MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 137 WLATMLKLPKTFMFSGTGGG--VIQNTTSDSILVTLIAARDRALDAVGAEN--------M 186
WL ML+LP+ F+ G G VIQ + S++ LV L+AAR + + + A + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 187 HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
KLV Y SDQ HS+ + + GV ++A+P+ D F++ L+ A+E D AGL+
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
P F+ AT+GTTS + DN+ + + +E IW+HVDAAYAGSA ICPEFRH LNG+E D
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 307 SFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGR 366
SF+F+PHKWLL DC +WVK+ L A DP YLK+ S + D++ WQ+ GR
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 367 RFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
RF+SL++W V R YGV LQ++IR ++L+ FE FV DPRFE+ LVCFRL
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLK- 414
Query: 427 YPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
++ LN LL+ +NS +++L + G ++LRFA+ + + HV AWE I
Sbjct: 415 -------GSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI 467
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/485 (41%), Positives = 292/485 (60%), Gaps = 26/485 (5%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++ +E+R++ +MVD+I Y + V V+PG+LR+ LP+SAP P+S+++I D+
Sbjct: 6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
+ I+PG+ HW SP+ A++PA S LG+ML N +GF W +SPA TELE+ VMD
Sbjct: 66 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMD 125
Query: 137 WLATMLKLPKTFMF---SGTGGGVIQNTTSDSILVTLIAARDRAL--------DAVGAEN 185
WLA ML LP+ F+ S GGGV+Q+T S+S L+ L+AAR + DA +
Sbjct: 126 WLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSL 185
Query: 186 MHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGL 245
+LV Y SDQ HS+ V K +S ++ LP VD NFSL + L++A+E D + GL
Sbjct: 186 NARLVAYASDQAHSS---VEKAGLISLVKMKFLP--VDDNFSLRGEALQKAIEEDKQRGL 240
Query: 246 VPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERV 305
VP+F+CAT+GTT A D + L + G+W+H+DAAYAG+A +CPEFR +L GIE
Sbjct: 241 VPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYA 300
Query: 306 DSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTG 365
DSF+F+P KW++ + DC WVK L + S +P YL++ + S DF WQ+
Sbjct: 301 DSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQIPLS 358
Query: 366 RRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLN 425
RRF+S++LW V+RS+GV NLQ+H+R +AK FE V++DP FEI RH LV FRL
Sbjct: 359 RRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLK 418
Query: 426 PYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWEL 485
P+S L +L + GR++L + ++RF V + T ++ W L
Sbjct: 419 G-PNS-------LTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNL 470
Query: 486 IMEGA 490
I + A
Sbjct: 471 IRDAA 475
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/489 (40%), Positives = 288/489 (58%), Gaps = 30/489 (6%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A EF+ A MVDFIA+Y +NI VL +V+PG+L+ +PD+AP +PE ++ +++D+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
+ I+PG+THW SP F A+FP S + +ML +GF W+ASPA TELE+V+MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 137 WLATMLKLPKTFMFSG--TGGGVIQNTTSDSILVTLIAARDRALDAVGAENMH------- 187
WL ML+LP F+ GGGVIQ T S+S LV L+ A+ + L V + +H
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEV--KELHPEWDEHT 178
Query: 188 ---KLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAG 244
KLV Y SDQ HS+ + L GV ++++ N + L +A+E DV G
Sbjct: 179 ILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQS------ENHRMRGAALEKAIEQDVAEG 232
Query: 245 LVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIER 304
L+P + T+GTT++ A D ++ V N++ +W+HVDAAYAGSA ICPE+RH + GIE
Sbjct: 233 LIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIES 292
Query: 305 VDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGT 364
DSF+F+PH W+L DC +W+K P +V A + DP YLK+ S D++ WQ+
Sbjct: 293 ADSFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKH--DMQGSAPDYRHWQIPL 350
Query: 365 GRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRL 424
GRRF++L+LW VLR YGV NLQ+HIR AK F +D RFE+ + LVCFRL
Sbjct: 351 GRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRL 410
Query: 425 NPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWE 484
GS + N LL +N G ++L + +Y LR A+ + T + +W+
Sbjct: 411 K-----GSNER---NEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462
Query: 485 LIMEGADRL 493
+ AD +
Sbjct: 463 EVSAAADEM 471
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 171/383 (44%), Gaps = 15/383 (3%)
Query: 66 PESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASP 125
PES E IL D ++ + G+ P FF + G GE L + N+ F + +P
Sbjct: 73 PESLEQILVDCRDTLKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 131
Query: 126 ASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN 185
+E + + + ++ S G G+ + S + +++AAR + V +
Sbjct: 132 VFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG 186
Query: 186 MH---KLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVE 242
M KLV++ S+Q+H + K G N+ + + + P + +
Sbjct: 187 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV--ILIKCNERGKIIPADFEAKILEAKQ 244
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGI 302
G VP ++ AT GTT A D ++ +A++ +Y +W+HVDAA+ G + + RH LNGI
Sbjct: 245 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI 304
Query: 303 ERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQV 362
ER +S +++PH + L C + VK+ G+L YL + + D D +
Sbjct: 305 ERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAI 364
Query: 363 GTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVV---PRHFAL 419
GR + W++ ++ G + ++ I + LA+ +K+ FE+V P H
Sbjct: 365 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TN 423
Query: 420 VCFRLNPYPHSGSADTEMLNRKL 442
VCF P G D+ KL
Sbjct: 424 VCFWYIPQSLRGVPDSPQRREKL 446
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 171/383 (44%), Gaps = 15/383 (3%)
Query: 66 PESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASP 125
PES E IL D ++ + G+ P FF + G GE L + N+ F + +P
Sbjct: 70 PESLEQILVDCRDTLKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 128
Query: 126 ASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN 185
+E + + + ++ S G G+ + S + +++AAR + V +
Sbjct: 129 VFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKG 183
Query: 186 MH---KLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVE 242
M KLV++ S+Q+H + K G N+ + + + P + +
Sbjct: 184 MAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNV--ILIKCNERGKIIPADFEAKILEAKQ 241
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGI 302
G VP ++ AT GTT A D ++ +A++ +Y +W+HVDAA+ G + + RH LNGI
Sbjct: 242 KGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGI 301
Query: 303 ERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQV 362
ER +S +++PH + L C + VK+ G+L YL + + D D +
Sbjct: 302 ERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAI 361
Query: 363 GTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVV---PRHFAL 419
GR + W++ ++ G + ++ I + LA+ +K+ FE+V P H
Sbjct: 362 QCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEH-TN 420
Query: 420 VCFRLNPYPHSGSADTEMLNRKL 442
VCF P G D+ KL
Sbjct: 421 VCFWYIPQSLRGVPDSPQRREKL 443
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 163/368 (44%), Gaps = 15/368 (4%)
Query: 65 RPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLAS 124
+P++ E IL Q + I P +F + G + L + N+ F + +
Sbjct: 65 QPQNLEEILMHCQTTLKYAIKTG-HPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIA 123
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P LE V + + ++ P G+G G+ + S + ++ AR + V +
Sbjct: 124 PVFVLLEYVTLKKMREIIGWP-----GGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEK 178
Query: 185 NMH---KLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADV 241
M +L+ + S+ +H + K G+ ++ + D + P L R +
Sbjct: 179 GMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSV--ILIKCDERGKMIPSDLERRILEAK 236
Query: 242 EAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNG 301
+ G VP + AT GTT A D + +A++ +Y IW+HVDAA+ G + + + L+G
Sbjct: 237 QKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSG 296
Query: 302 IERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQ 361
+ER +S +++PH + L C L V++ GL+ YL + + D D
Sbjct: 297 VERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKA 356
Query: 362 VGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVV---PRHFA 418
+ GR +LW++ R+ G ++H+ + LA+ +K+ +E+V P+H
Sbjct: 357 LQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDGKPQH-T 415
Query: 419 LVCFRLNP 426
VCF P
Sbjct: 416 NVCFWYIP 423
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/400 (26%), Positives = 173/400 (43%), Gaps = 20/400 (5%)
Query: 50 EPGFLRSALPDSAPHRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEM 109
EP L+ L + ES + IL+ + I + P FF + + G +
Sbjct: 70 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRI 128
Query: 110 LCACFNSVGFNWLASPASTELEIVVMDWLATMLKLPKTFMFSGTG----GGVIQNTTSDS 165
+ N+ + + +P +E V+ L ++ SG G GG I N
Sbjct: 129 ITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS-----SGDGIFCPGGSISN----- 178
Query: 166 ILVTLIAARDRALDAV--GAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVD 223
+ +A R D G + L ++ S + H + K G+ ++R + D
Sbjct: 179 MYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVV--KAD 236
Query: 224 ANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDA 283
+ P+ L R + G VP + AT GTT A D +E +A+V +G+W+HVDA
Sbjct: 237 ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA 296
Query: 284 AYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQ-PGLLVKALSTDPE 342
A+ GS + RH L+GI+R DS +++PHK L + L C L ++ LL + +
Sbjct: 297 AWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQAS 356
Query: 343 YLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGF 402
YL + + +D D V GRR L+LW++ ++ G L+ I LA+
Sbjct: 357 YLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEE 416
Query: 403 VKSDPRFEIVVPRHFALVCFRLNPYPHSGSADTEMLNRKL 442
+K FE+V+ F VCF P G ++ + +L
Sbjct: 417 MKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERL 456
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 156/367 (42%), Gaps = 30/367 (8%)
Query: 114 FNSVGFNWLASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAA 173
N +W + ++T +E V++WL L + T GG N L A
Sbjct: 125 LNQSXDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQXG------LXLA 178
Query: 174 RDRALDAVGAENMHKL---------VVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDA 224
RD D + ++ KL + S ++H T K G+ + + + D
Sbjct: 179 RDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADG 238
Query: 225 NFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAA 284
++ +L +A E GL+P + T GTT A+D+++ +A+ A ++ W HVD A
Sbjct: 239 TXDIT-KLDEVIAQAKAE-GLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGA 296
Query: 285 YAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYL 344
Y G A I + L G+ER S S HK + C L V K L +YL
Sbjct: 297 YGG-ALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYL 354
Query: 345 KNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFE--GF 402
+ E ++V D + T +RF +L+++ ++ G L D LA+ E
Sbjct: 355 NREHDELPNLV---DKSIATTKRFDALKVFXTXQNVGPKALGD--XYDHLLAQTLEVADX 409
Query: 403 VKSDPRFEIVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGL 462
++++ +FE++ + V FR +AD + LN+ L + G L TIV G
Sbjct: 410 IRTNDQFELLAEPSLSTVLFRATHE----TADLDELNKALRLEALTRGIAVLGETIVDGK 465
Query: 463 YMLRFAV 469
L+F +
Sbjct: 466 TALKFTI 472
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 198 HSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEA-DVEAGLVPLFLCATVGT 256
H +F K G ++ + + ++++ + ++ AVE DV+ + GT
Sbjct: 133 HFSFEK-----GREXXDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDG------IIGIAGT 181
Query: 257 TSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIER-------VDSFS 309
T +DN+E L+++A E I++HVDAA+ G + ++ G+ VDS +
Sbjct: 182 TELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSIT 241
Query: 310 FSPHK 314
PHK
Sbjct: 242 IDPHK 246
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 86/219 (39%), Gaps = 32/219 (14%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P++ + E V+ A ML GT G + + ++S+L+ + RD A G
Sbjct: 139 PSTAKFEAEVVAMTAHMLGGDAA---GGTVCGTVTSGGTESLLLAMKTYRDWARATKGIT 195
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD--VE 242
+V + H+ F K + G I+ + T +DA++ +R A+ + V
Sbjct: 196 APEAVVPVSA---HAAFDKAAQYFG-----IKLVRTPLDADYRADVAAMREAITPNTVVV 247
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG--------SACICPE 294
AG P + VD + +A +A E+GI HVDA G P
Sbjct: 248 AGSAPGY--------PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 299
Query: 295 FRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLL 333
F L G V S S HK+ + ++P LL
Sbjct: 300 FDFRLEG---VTSVSADTHKYGYGAKGTSVILYRRPDLL 335
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 84/217 (38%), Gaps = 28/217 (12%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P++ + E V+ A ML GT G + + ++S+L+ + RD A G
Sbjct: 135 PSTAKFEAEVVAMTAHMLGGDAA---GGTVCGTVTSGGTESLLLAMKTYRDWARATKGIT 191
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAG 244
+V + H+ F K + G I+ + T +DA++ +R A+ +
Sbjct: 192 APEAVVPVSA---HAAFDKAAQYFG-----IKLVRTPLDADYRADVAAMREAITPNT--- 240
Query: 245 LVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG--------SACICPEFR 296
+ + + VD + +A +A E+GI HVDA G P F
Sbjct: 241 ---VVVAGSAPGXPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFD 297
Query: 297 HYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLL 333
L G V S S HK+ + ++P LL
Sbjct: 298 FRLEG---VTSVSADTHKYGYGAKGTSVILYRRPDLL 331
>pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum
pdb|1J32|B Chain B, Aspartate Aminotransferase From Phormidium Lapideum
Length = 388
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 200 TFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTST 259
++ ++ KLA +P LPT+V+ F +SP+ +R+A+ + + +F + T
Sbjct: 126 SYPEMVKLAEGTPV---ILPTTVETQFKVSPEQIRQAITPKTK---LLVFNTPSNPTGMV 179
Query: 260 TAVDNVEPLAEVANEYGIWVHVDAAY 285
D V +A+VA E G+WV D Y
Sbjct: 180 YTPDEVRAIAQVAVEAGLWVLSDEIY 205
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 32/219 (14%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P++ + E V+ A ML GT G + + ++S+L+ + RD A G
Sbjct: 139 PSTAKFEAEVVAMTAHMLGGDAA---GGTVCGTVTSGGTESLLLAMKTYRDWARATKGIT 195
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD--VE 242
+V + H+ F K + G I+ + T +DA++ +R A+ + V
Sbjct: 196 APEAVVPVSA---HAAFDKAAQYFG-----IKLVRTPLDADYRADVAAMREAITPNTVVV 247
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG--------SACICPE 294
AG P + VD + +A +A E+GI HVDA G P
Sbjct: 248 AGSAPGY--------PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 299
Query: 295 FRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLL 333
F L G V S S H + + ++P LL
Sbjct: 300 FDFRLEG---VTSVSADTHXYGYGAKGTSVILYRRPDLL 335
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 32/219 (14%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P++ + E V+ A ML GT G + + ++S+L+ + RD A G
Sbjct: 135 PSTAKFEAEVVAMTAHMLGGDAA---GGTVCGTVTSGGTESLLLAMKTYRDWARATKGIT 191
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD--VE 242
+V + H+ F K + G I+ + T +DA++ +R A+ + V
Sbjct: 192 APEAVVPVSA---HAAFDKAAQYFG-----IKLVRTPLDADYRADVAAMREAITPNTVVV 243
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG--------SACICPE 294
AG P + VD + +A +A E+GI HVDA G P
Sbjct: 244 AGSAPGY--------PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 295
Query: 295 FRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLL 333
F L G V S S H + + ++P LL
Sbjct: 296 FDFRLEG---VTSVSADTHXYGYGAKGTSVILYRRPDLL 331
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 85/219 (38%), Gaps = 32/219 (14%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P++ + E V+ A ML GT G + + ++S+L+ + RD A G
Sbjct: 135 PSTAKFEAEVVAMTAHMLGGDAA---GGTVCGTVTSGGTESLLLAMKTYRDWARATKGIT 191
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD--VE 242
+V + H+ F K + G I+ + T +DA++ +R A+ + V
Sbjct: 192 APEAVVPVSA---HAAFDKAAQYFG-----IKLVRTPLDADYRADVAAMREAITPNTVVV 243
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG--------SACICPE 294
AG P + VD + +A +A E+GI HVDA G P
Sbjct: 244 AGSAPGY--------PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPP 295
Query: 295 FRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLL 333
F L G V S S H + + ++P LL
Sbjct: 296 FDFRLEG---VTSVSADTHAYGYGAKGTSVILYRRPDLL 331
>pdb|1XEY|A Chain A, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
pdb|1XEY|B Chain B, Crystal Structure Of The Complex Of Escherichia Coli Gada
With Glutarate At 2.05 A Resolution
Length = 466
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 55/269 (20%)
Query: 116 SVGFNWLAS---PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIA 172
S+ NW+ P S +++ ++ +A + P G I +S++ ++ +A
Sbjct: 79 SINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI--GSSEACMLGGMA 136
Query: 173 ARDR---ALDAVGAENMHKLVVYGSDQTHSTFAKVC--KLAGVSPANIRALPTSVDANFS 227
+ R ++A G +V G Q +C K A +R +P F
Sbjct: 137 MKWRWRKRMEAAGKPTDKPNLVCGPVQ-------ICWHKFARYWDVELREIPMRPGQLF- 188
Query: 228 LSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEY------GIWVHV 281
+ P+ + A + + G+VP F G T T + +PL + +++ I +H+
Sbjct: 189 MDPKRMIEACDENT-IGVVPTF-----GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 242
Query: 282 DAAYAG------SACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVK 335
DAA G + I +FR + RV S S S HK+ L+ L C WV
Sbjct: 243 DAASGGFLAPFVAPDIVWDFR-----LPRVKSISASGHKFGLAPLGCG--WV-------- 287
Query: 336 ALSTDPEYLKNKPSESNSVVDFKDWQVGT 364
+ D E L P E VD+ Q+GT
Sbjct: 288 -IWRDEEAL---PQELVFNVDYLGGQIGT 312
>pdb|2DGK|A Chain A, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|B Chain B, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|C Chain C, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|D Chain D, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|E Chain E, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
pdb|2DGK|F Chain F, Crystal Structure Of An N-terminal Deletion Mutant Of
Escherichia Coli Gadb In An Autoinhibited State
(aldamine)
Length = 452
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 55/269 (20%)
Query: 116 SVGFNWLAS---PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIA 172
S+ NW+ P S +++ ++ +A + P G I +S++ ++ +A
Sbjct: 65 SINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI--GSSEACMLGGMA 122
Query: 173 ARDR---ALDAVGAENMHKLVVYGSDQTHSTFAKVC--KLAGVSPANIRALPTSVDANFS 227
+ R ++A G +V G Q +C K A +R +P F
Sbjct: 123 MKWRWRKRMEAAGKPTDKPNLVCGPVQ-------ICWHKFARYWDVELREIPMRPGQLF- 174
Query: 228 LSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEY------GIWVHV 281
+ P+ + A + + G+VP F G T T + +PL + +++ I +H+
Sbjct: 175 MDPKRMIEACDENT-IGVVPTF-----GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 228
Query: 282 DAAYAG------SACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVK 335
DAA G + I +FR + RV S S S HK+ L+ L C WV
Sbjct: 229 DAASGGFLAPFVAPDIVWDFR-----LPRVKSISASGHKFGLAPLGCG--WV-------- 273
Query: 336 ALSTDPEYLKNKPSESNSVVDFKDWQVGT 364
+ D E L P E VD+ Q+GT
Sbjct: 274 -IWRDEEAL---PQELVFNVDYLGGQIGT 298
>pdb|1PMM|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMM|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Low Ph)
pdb|1PMO|A Chain A, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|B Chain B, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|C Chain C, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|D Chain D, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|E Chain E, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|1PMO|F Chain F, Crystal Structure Of Escherichia Coli Gadb (Neutral Ph)
pdb|2DGL|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGL|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Bromide
pdb|2DGM|A Chain A, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|B Chain B, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|C Chain C, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|D Chain D, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|E Chain E, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|2DGM|F Chain F, Crystal Structure Of Escherichia Coli Gadb In Complex With
Iodide
pdb|3FZ6|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ6|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Complex With Xenon
pdb|3FZ7|A Chain A, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|B Chain B, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|C Chain C, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|D Chain D, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|E Chain E, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ7|F Chain F, Crystal Structure Of Apo Glutamate Decarboxylase Beta From
Escherichia Coli
pdb|3FZ8|A Chain A, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|B Chain B, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|C Chain C, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|D Chain D, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|E Chain E, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
pdb|3FZ8|F Chain F, Crystal Structure Of Glutamate Decarboxylase Beta From
Escherichia Coli: Reduced Schiff Base With Plp
Length = 466
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 55/269 (20%)
Query: 116 SVGFNWLAS---PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIA 172
S+ NW+ P S +++ ++ +A + P G I +S++ ++ +A
Sbjct: 79 SINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTI--GSSEACMLGGMA 136
Query: 173 ARDR---ALDAVGAENMHKLVVYGSDQTHSTFAKVC--KLAGVSPANIRALPTSVDANFS 227
+ R ++A G +V G Q +C K A +R +P F
Sbjct: 137 MKWRWRKRMEAAGKPTDKPNLVCGPVQ-------ICWHKFARYWDVELREIPMRPGQLF- 188
Query: 228 LSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEY------GIWVHV 281
+ P+ + A + + G+VP F G T T + +PL + +++ I +H+
Sbjct: 189 MDPKRMIEACDENT-IGVVPTF-----GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 242
Query: 282 DAAYAG------SACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVK 335
DAA G + I +FR + RV S S S HK+ L+ L C WV
Sbjct: 243 DAASGGFLAPFVAPDIVWDFR-----LPRVKSISASGHKFGLAPLGCG--WV-------- 287
Query: 336 ALSTDPEYLKNKPSESNSVVDFKDWQVGT 364
+ D E L P E VD+ Q+GT
Sbjct: 288 -IWRDEEAL---PQELVFNVDYLGGQIGT 312
>pdb|3BV6|A Chain A, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|B Chain B, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|C Chain C, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|D Chain D, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|E Chain E, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
pdb|3BV6|F Chain F, Crystal Structure Of Uncharacterized Metallo Protein From
Vibrio Cholerae With Beta-Lactamase Like Fold
Length = 379
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 27/105 (25%)
Query: 293 PEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESN 352
PE+ +LN E ++ P+ + + +L C +W+K G +N
Sbjct: 42 PEWGTWLN--EEIEQTVVEPNTFSMWWLGCTGIWLKSAG------------------NTN 81
Query: 353 SVVDFKDWQVGTGRRFKSLRLW----MVLRSYGVLNLQSHIRSDI 393
+DF W GTG++ + RL ++R GV LQ ++R+ I
Sbjct: 82 LSIDF--W-CGTGKKTQKNRLMNTQHQMMRMGGVEALQPNLRTSI 123
>pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
pdb|3N3D|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367
Length = 335
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 26 AHQMVDFIADYYQNIE--SYPVLTQVEPGFLRSALPDSAPHRPESFETILKDVQEKIIPG 83
A+QM+D I DY + + PVL + G L S H P F +LK Q +
Sbjct: 212 AYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLED 271
Query: 84 ITH 86
I H
Sbjct: 272 IKH 274
>pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
pdb|3PKO|B Chain B, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Lactobacillus Brevis Atcc 367 Complexed With
Citrate
Length = 334
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 26 AHQMVDFIADYYQNIE--SYPVLTQVEPGFLRSALPDSAPHRPESFETILKDVQEKIIPG 83
A+QM+D I DY + + PVL + G L S H P F +LK Q +
Sbjct: 219 AYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSLSHAPRDFHKLLKKKQAMTLED 278
Query: 84 ITH 86
I H
Sbjct: 279 IKH 281
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 214 NIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVAN 273
NI +P + +++++P+ + +E + G V L L T + + +V+ +A+V +
Sbjct: 116 NIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALI-TYPDGNYGNLPDVKKIAKVCS 174
Query: 274 EYGIWVHVDAAYA 286
EY + + V+ AYA
Sbjct: 175 EYDVPLLVNGAYA 187
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 217 ALPTSVDANFS-LSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVE 266
A PT + A+ ++P + RAV V AG PL + A +G TA+D ++
Sbjct: 362 AYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDMID 412
>pdb|4FEZ|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
pdb|4FEZ|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant
Length = 388
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 22/77 (28%)
Query: 234 RRAVEADVEA---GLVPLFLCAT-----VGTTSTTAVDNVEPLAEVANEYGIWVHVD--- 282
R +EA V A G+ P +C T VG TA+ + A VANEYGI V D
Sbjct: 186 RALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADA---AGVANEYGIPVIADGGI 242
Query: 283 --------AAYAGSACI 291
A AG++C+
Sbjct: 243 RFSGDISKAIAAGASCV 259
>pdb|4FO4|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4FO4|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp And
Mycophenolic Acid
pdb|4HLV|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4HLV|B Chain B, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, In Complex With Nad And Imp
pdb|4IX2|A Chain A, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|B Chain B, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|C Chain C, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
pdb|4IX2|D Chain D, Inosine 5'-monophosphate Dehydrogenase From Vibrio
Cholerae, Deletion Mutant, Complexed With Imp
Length = 366
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 22/77 (28%)
Query: 234 RRAVEADVEA---GLVPLFLCAT-----VGTTSTTAVDNVEPLAEVANEYGIWVHVD--- 282
R +EA V A G+ P +C T VG TA+ + A VANEYGI V D
Sbjct: 164 RALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADA---AGVANEYGIPVIADGGI 220
Query: 283 --------AAYAGSACI 291
A AG++C+
Sbjct: 221 RFSGDISKAIAAGASCV 237
>pdb|4FXS|A Chain A, Inosine 5'-Monophosphate Dehydrogenase From Vibrio
Cholerae Complexed With Imp And Mycophenolic Acid
Length = 496
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 22/77 (28%)
Query: 234 RRAVEADVEA---GLVPLFLCAT-----VGTTSTTAVDNVEPLAEVANEYGIWVHVD--- 282
R +EA V A G+ P +C T VG TA+ + A VANEYGI V D
Sbjct: 287 RALIEAGVSAVKVGIGPGSICTTRIVTGVGVPQITAIADA---AGVANEYGIPVIADGGI 343
Query: 283 --------AAYAGSACI 291
A AG++C+
Sbjct: 344 RFSGDISKAIAAGASCV 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,814,811
Number of Sequences: 62578
Number of extensions: 614226
Number of successful extensions: 1436
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1394
Number of HSP's gapped (non-prelim): 34
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)