RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010842
(499 letters)
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 688 bits (1777), Expect = 0.0
Identities = 277/481 (57%), Positives = 372/481 (77%), Gaps = 1/481 (0%)
Query: 14 FKPLDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETIL 73
+P+DA++ R+ H+MVDFIADYY++IE++PVL+QV+PG+LR LPDSAP++PE+ + +L
Sbjct: 7 LRPMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVL 66
Query: 74 KDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIV 133
DVQ KI+PG+THW SPN+FA++P+ S AGFLGEML A N VGF+W+ SPA+TELE++
Sbjct: 67 DDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMI 126
Query: 134 VMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYG 193
V+DWLA +L LP+ F+ +G GGGVIQ T S+++LV L+AARDR L VG + KLVVY
Sbjct: 127 VLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYA 186
Query: 194 SDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCAT 253
SDQTHS K C++AG+ P N R L T N++L+P+LL A+ D+ +GL+P FLCAT
Sbjct: 187 SDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCAT 246
Query: 254 VGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPH 313
VGTTS+TAVD + L ++A G+W HVDAAYAGSACICPE+RHY++G+E DSF+ + H
Sbjct: 247 VGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAH 306
Query: 314 KWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRL 373
KW L+ DC LWVK L+++LST+PE+LKNK S++NSVVD+KDWQ+ GRRF+SL+L
Sbjct: 307 KWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKL 366
Query: 374 WMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNPYPHSGSA 433
WMVLR YGV NLQS+IR+ I+LAK FE V D RFE+V PR F+LVCFRL P P +
Sbjct: 367 WMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVP-PKNNED 425
Query: 434 DTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELIMEGADRL 493
+ LN LLD VNS+G+++++HT++ G Y+LRFAVGA LT+ERHV AAW+++ + A +L
Sbjct: 426 NGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKL 485
Query: 494 F 494
Sbjct: 486 L 486
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 566 bits (1459), Expect = 0.0
Identities = 262/496 (52%), Positives = 358/496 (72%), Gaps = 5/496 (1%)
Query: 2 GSLDSNMAESVQFKPLDAQEFRKQAHQMVDFIADYYQNIES----YPVLTQVEPGFLRSA 57
G+ +N A+ V+ KP+D++ R+Q H MVDFIADYY+N++ +PVL+QV+PG+LR
Sbjct: 39 GNGKANGAKVVKMKPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDM 98
Query: 58 LPDSAPHRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSV 117
LPDSAP RPES + +L DV +KI+PGITHW SP++FA++ ++ S AGFLGEML A + V
Sbjct: 99 LPDSAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVV 158
Query: 118 GFNWLASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRA 177
GF WL SPA+TELEI+V+DWLA +L+LP F+ +G GGGVIQ T +++LV ++AARDR
Sbjct: 159 GFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRI 218
Query: 178 LDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAV 237
L VG + +LVVYGSDQTHS+F K C + G+ NIR L T N+ + P+ L A+
Sbjct: 219 LKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAI 278
Query: 238 EADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRH 297
D+ G +P F+CATVGTTS+ AVD + PL +A +YGIW+HVDAAYAG+ACICPE+R
Sbjct: 279 SHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRK 338
Query: 298 YLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDF 357
+++GIE DSF+ + HKWL + C LWVK L+ AL T+PEYL+ K S+ ++VV++
Sbjct: 339 FIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNY 398
Query: 358 KDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHF 417
KDWQ+ RRF+SL+LWMVLR YG NL++ IR + LAK FE +V DP FE+V R+F
Sbjct: 399 KDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYF 458
Query: 418 ALVCFRLNPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDER 477
+LVCFRL P E NR+LL VNSTG+++++HT + G ++LRFAVGA LT+E+
Sbjct: 459 SLVCFRLAPVDGDEDQCNER-NRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEK 517
Query: 478 HVVAAWELIMEGADRL 493
HV AW++I + A +
Sbjct: 518 HVTEAWQIIQKHASKF 533
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 521 bits (1343), Expect = 0.0
Identities = 196/377 (51%), Positives = 250/377 (66%), Gaps = 8/377 (2%)
Query: 51 PGFLRSALPDSAPHRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEML 110
PG+LR LP++AP PE IL D+++ I+PG+T W SPNF A+FPA S LG+ML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 111 CACFNSVGFNWLASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTL 170
N GF W +SPA TELE VVMDWLA ML LPK F+ SG GGGV+Q +S+S L+ L
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120
Query: 171 IAARDRALDAVGAENMH---KLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFS 227
+AAR + + + A KLV Y SDQ HS+ K +AGV +R +PT D N
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGV---ELREIPT--DENGK 175
Query: 228 LSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG 287
+ L +A+E D E GL+P F+CAT+GTT + A D ++ L ++ N+Y +W+HVDAAYAG
Sbjct: 176 MRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAG 235
Query: 288 SACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNK 347
SA ICPEFRH+L GIER DSFSF+PHKW+L LDC LWV+ G L +AL +PEYL +
Sbjct: 236 SAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHN 295
Query: 348 PSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDP 407
+S+ VD+ DWQ+ RRF+ L+LW VLRSYGV LQ+ IR + LAK FE V+ D
Sbjct: 296 DKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDS 355
Query: 408 RFEIVVPRHFALVCFRL 424
RFEI R LVCFRL
Sbjct: 356 RFEICAERGLGLVCFRL 372
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 344 bits (886), Expect = e-116
Identities = 137/398 (34%), Positives = 191/398 (47%), Gaps = 59/398 (14%)
Query: 92 FFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMDWLATMLKLPKTFMFS 151
F A F T+ L EML + N++ F W SPA+TE+E V++WLA + LP S
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP-----S 55
Query: 152 GTGGGVIQNTTSDSILVTLIAARDRALDAV---GAENMHKLVVYGSDQTHSTFAKVCKLA 208
GV + S+S L+ L+AARDRA + G + KLV+ SDQ H + K
Sbjct: 56 EDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL 115
Query: 209 GVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPL 268
V +R +P VD + + P+ L A++ D GL P+ + AT GTT T A+D +E +
Sbjct: 116 DV---KVRLVP--VDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 269 AEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVK 328
A++A +Y +W+HVDAAY G PE RH GIERVDS S PHK+ L L C + V
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV- 229
Query: 329 QPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSH 388
++L+LW LR +G H
Sbjct: 230 ----------------------------------------RALKLWATLRRFGRDGYGEH 249
Query: 389 IRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWVNS 448
I + LAK +++DP FE++ + +LVCFRL P S + LN L D +N
Sbjct: 250 IDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP-----SVKLDELNYDLSDRLNE 304
Query: 449 TGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
G ++ T +GG +LRF V LT A E I
Sbjct: 305 RGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDI 342
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 220 bits (562), Expect = 3e-66
Identities = 109/454 (24%), Positives = 185/454 (40%), Gaps = 29/454 (6%)
Query: 33 IADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDVQEKII-PGITHWLSPN 91
+ D + P F + AP + E E +L ++ E +I + P
Sbjct: 4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPR 63
Query: 92 FFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMDWLATMLKLPKTFMFS 151
E+L + N + SPA+ ELE V++ L+ +L P+
Sbjct: 64 ANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEAS-- 121
Query: 152 GTGGGVIQNTTSDSILVTLIAARDRALDAVGAENM---HKLVVYGSDQTHSTFAKVCKLA 208
G + +++ L+ L+AAR+R AE+ K + S+ H +F K +
Sbjct: 122 ----GTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL 177
Query: 209 GVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPL 268
G+ +R +PT V ++ + L A++ + G+V T GTT T ++D++E L
Sbjct: 178 GLG---LRRVPT-VPTDYRIDVDALEEAIDENTIGGVV----VGTAGTTDTGSIDDIEEL 229
Query: 269 AEVANEYGIWVHVDAAYAGSACICPEFRHY-LNGIERVDSFSFSPHKWLLSYLDCCCLWV 327
A++A EYGIW+HVDAA+ G E G+E VDS + HK+ L+ + C +
Sbjct: 230 ADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLF 289
Query: 328 KQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQS 387
+ L + L YL + +F GR+ +L L+ LR G +
Sbjct: 290 RDEEALRRILIFADYYL-----PGGGIPNFTILGSRPGRQ--ALALYANLRRLGREGYRK 342
Query: 388 HIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNPY---PHSGSADTEMLNRKLLD 444
+ + LA+ ++ FE+V +V FRL S + ++
Sbjct: 343 LLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLSERLDRRGWQVPA 402
Query: 445 WVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERH 478
+ G + T V G L+F V L +R
Sbjct: 403 QLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE 436
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 94.4 bits (235), Expect = 1e-20
Identities = 84/293 (28%), Positives = 123/293 (41%), Gaps = 41/293 (13%)
Query: 155 GGVIQNTTSDSILVTLIAARDRALDA------VGAENMHK-LVVYG--------SDQTHS 199
GG + N T+ L AR+R L A V E + L YG S++ H
Sbjct: 167 GGTVANITA------LWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHY 220
Query: 200 TFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTST 259
+ K + G+ N+ A+ T DAN + LR E + PL + GTT T
Sbjct: 221 SLGKAADVLGIGRDNLIAIKT--DANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTET 278
Query: 260 TAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSY 319
+D ++ +A++A E G HVDAA+ G+ + +RH L GIER DS + HK L
Sbjct: 279 GNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVP 338
Query: 320 LDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRS 379
+ + K P L+ A+ EY+ K S KD T + R M +
Sbjct: 339 MGAGMVLFKDPA-LMSAIEHHAEYILRKGS--------KDLGSHT---LEGSRPGMAMLV 386
Query: 380 YGVLNLQSH------IRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
Y L++ I I AK F ++ P FE+V L+ +R P
Sbjct: 387 YAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVP 439
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 70.8 bits (174), Expect = 3e-13
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P + ++E V+ L +L LP + + +GG +++ + + AA++ A E
Sbjct: 55 PGTKKIEEEVVGSLGNLLHLPDAYGYIVSGG-------TEANIQAVRAAKNLA----REE 103
Query: 185 -NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEA 243
++V S H +F K ++ G+ A +D ++++ + + ++ D
Sbjct: 104 KRTPNIIVPES--AHFSFEKAAEMLGLEL--RYA---PLDEDYTVDVKDVEDLID-DNTI 155
Query: 244 GLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG--------SACICPEF 295
G+V GTT +D++E L+++A E GI++HVDAA+ G P F
Sbjct: 156 GIV-----GIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPP-F 209
Query: 296 RHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYL 344
L G V S + PHK LS + + + L K LS D YL
Sbjct: 210 DFSLPG---VQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYL 254
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 63.9 bits (156), Expect = 5e-12
Identities = 42/184 (22%), Positives = 63/184 (34%), Gaps = 30/184 (16%)
Query: 135 MDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGS 194
+ LA +L+ G V + + + L+A V
Sbjct: 6 EEKLARLLQP-------GNDKAVFVPSGTGANEAALLALL-----------GPGDEVIVD 47
Query: 195 DQTH-STFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCAT 253
H S + +LAG A +P L +L +A + T
Sbjct: 48 ANGHGSRYWVAAELAG---AKPVPVPVDDAGYGGLDVAILEEL-----KAKPNVALIVIT 99
Query: 254 VGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPH 313
TTS + ++ + ++A EYGI + VDAA AG A P L D +FS H
Sbjct: 100 PNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG---VLIPEGGADVVTFSLH 156
Query: 314 KWLL 317
K L
Sbjct: 157 KNLG 160
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 66.8 bits (164), Expect = 5e-12
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAE 184
P + +LE ++ L +L LP + + +GG T +I + AAR+ A AE
Sbjct: 55 PGTAKLEEEAVEMLGELLHLPDAYGYITSGG------TEANIQA-VRAARNLA----KAE 103
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAG 244
+VV S H +F K + GV +R P D ++ + + + ++ + G
Sbjct: 104 KP-NIVVPES--AHFSFDKAADMLGV---ELRRAPL--DDDYRVDVKAVEDLIDDNT-IG 154
Query: 245 LVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGS----ACICPEFRHYLN 300
+V GTT VD + L+++A E GI++HVDAA+ G P F L
Sbjct: 155 IV-----GIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLP 209
Query: 301 GIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYL 344
G VDS + PHK L+ + + + L AL+ D YL
Sbjct: 210 G---VDSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYL 249
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 63.1 bits (154), Expect = 9e-11
Identities = 69/304 (22%), Positives = 126/304 (41%), Gaps = 48/304 (15%)
Query: 106 LGEMLCACFNSVGFNWLASP----ASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNT 161
L N+ G + + S + E VM++ A + K+P G I N
Sbjct: 39 LKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKIP-----FNESWGYITNG 92
Query: 162 TSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTS 221
++ L AR+ D +Y S TH + +K+ +L + I +LP
Sbjct: 93 GTEGNLYGCYLARELFPDGT---------LYYSKDTHYSVSKIARLLRIKSRVITSLP-- 141
Query: 222 VDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGI---W 278
N + L ++ + P + A +GTT T A+DN++ + E+ + GI +
Sbjct: 142 ---NGEIDYDDLISKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYY 195
Query: 279 VHVDAAYAGSACICP--EFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKA 336
+H DAA +G I P + + +DS + S HK++ S + C + K+ V+
Sbjct: 196 IHADAALSGM--ILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKK--KYVER 251
Query: 337 LSTDPEYLKNKPSESNSVVDFKDWQVGTGRR-FKSLRLWMVLRSYGVLNLQSHIRSDIRL 395
+S D +Y+ + +D + R +L LW +RS G L+ ++ + +
Sbjct: 252 ISVDVDYIGS-----------RDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDM 300
Query: 396 AKMF 399
A+
Sbjct: 301 AQYA 304
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 47.9 bits (114), Expect = 9e-06
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 160 NTTSDSILVTLIAARD-----RALDAVGAENMHKLVVYGSDQT-HSTFAKVCKLAGVSPA 213
N + I+ L +A D +A A +++ KL + QT H ++ K + G+
Sbjct: 188 NMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLD 247
Query: 214 NIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVAN 273
+ +P VD+N+ + L + + L + VG+T AVD ++ + + N
Sbjct: 248 QV--IPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRN 305
Query: 274 EY---GI--WVHVDAAYAGSA 289
+ GI ++HVDAAY G
Sbjct: 306 KLMKEGIYFYLHVDAAYGGYG 326
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 47.1 bits (112), Expect = 1e-05
Identities = 59/275 (21%), Positives = 108/275 (39%), Gaps = 39/275 (14%)
Query: 127 STELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENM 186
S + E+ V+DW A + +L K + G I ++ L ++ R+ D +
Sbjct: 64 SRQFEVGVLDWFARLWELEKDEYW-----GYITTCGTEGNLHGILVGREVFPDGI----- 113
Query: 187 HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
+Y S ++H + K ++ + + LP+ L L + +
Sbjct: 114 ----LYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNRDK-------- 161
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGI-----WVHVDAAYAGSACICPEFRHYLNG 301
P L +GTT AVD+++ + + E G ++H D A G +
Sbjct: 162 PAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTF 221
Query: 302 IERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQ 361
+ + S S S HK+L + C ++ VKALS + EYL S +++ ++
Sbjct: 222 RKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLN---SRDATIMGSRNGH 276
Query: 362 VGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLA 396
L LW LR G ++ ++ +R A
Sbjct: 277 A-------PLYLWYTLRRKGYRGIKRDVQHCMRNA 304
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 42.3 bits (100), Expect = 4e-04
Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 172 AARDRALDAVGAENMHKLVVYGSDQTHS--TFAKVCKLAGVSPANIRALPTSVDANFSLS 229
AAR+ + A+ +V+ T + A+ L + + ++ + ++
Sbjct: 70 AAREAVARFLNAD-SSDEIVFTRGTTEALNLVARG--LGRSLKPGDEIVVSDLEHHSNIV 126
Query: 230 P-QLLRRAVEADV------EAGLVPLFLCATVGTTST-----TAVDNV----EPLAEVAN 273
P Q L + A V + GL+ L + T T + V NV P+ E+A
Sbjct: 127 PWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAE 186
Query: 274 ---EYGIWVHVDAAYAGSACICPEFRHYLNGIER--VDSFSFSPHKWLLSYLDCCCLWVK 328
E+G V VDAA A H ++ D +FS HKWLL L+V+
Sbjct: 187 LAHEHGALVLVDAAQA--------AGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVR 238
Query: 329 QPGL 332
+ L
Sbjct: 239 KELL 242
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 41.5 bits (98), Expect = 6e-04
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 163 SDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSV 222
+ + + LI + T+ ++ ++ +LAG P
Sbjct: 74 AGANIEALIFL---------LRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRY---PLYS 121
Query: 223 DANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVD 282
+F L L A++ E V L T + ++ +E L ++A E+ I + VD
Sbjct: 122 SNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVD 181
Query: 283 AAYAG 287
AYAG
Sbjct: 182 EAYAG 186
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 41.2 bits (97), Expect = 9e-04
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 23/91 (25%)
Query: 251 CATVGTTSTTAVDNVEPLAEVANEYG------IWVHVDAAYAGSACICP--------EFR 296
+GTT T ++V+ L + +EY I +HVDAA G I P +FR
Sbjct: 191 VCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGG--FIAPFVYPDLEWDFR 248
Query: 297 HYLNGIERVDSFSFSPHKWLLSYLDCCCLWV 327
RV S + S HK+ L Y WV
Sbjct: 249 L-----PRVKSINVSGHKYGLVYPGVG--WV 272
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 38.8 bits (91), Expect = 0.006
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 190 VVYGSDQTHSTF---AKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
++ + H+ ++ K G A +R +P VD N L L + + +
Sbjct: 91 ILVTEMEHHANLVPWQELAKRTG---ATVRVIP--VDPNGLLDLDALEKLLTPRTKL--- 142
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
+ + T V+ VE + ++A+EYG V VDAA A + + VD
Sbjct: 143 -VAITHVS--NVTGTVNPVEEIGKLAHEYGALVVVDAAQA-----VGHRPIDVQALG-VD 193
Query: 307 SFSFSPHK 314
+FS HK
Sbjct: 194 FLAFSGHK 201
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 37.2 bits (87), Expect = 0.020
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 28/103 (27%)
Query: 221 SVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDN-------VEPLAEVAN 273
VD+N + + L A+ D LV S +N + + E+
Sbjct: 122 PVDSNGLVDLEQLEEALRPDT--ILV-----------SIMHANNETGTIQPIAEIGEICK 168
Query: 274 EYGIWVHVDAAYA-GSACICPEFRHYLNGIERVDSFSFSPHKW 315
E GI HVDA A G I E VD SFS HK+
Sbjct: 169 ERGILFHVDAVQAVGKIPIDLE-------ELGVDLLSFSAHKF 204
>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal
aspartate aminotransferase [Amino acid transport and
metabolism].
Length = 383
Score = 36.4 bits (85), Expect = 0.025
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 28/142 (19%)
Query: 143 KLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFA 202
+ + SG+G + ++ + +L+ D+ L V +G FA
Sbjct: 54 ENGDVVLLSGSGTLAM-----EAAVASLVEPGDKVLVVVNG-------KFGE-----RFA 96
Query: 203 KVCKLAGVSPANIRALP-TSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTA 261
++ + G + +VD P+ + A++ D + V TST
Sbjct: 97 EIAERYGAEVVVLEVEWGEAVD------PEEVEEALDKDPDIKAV----AVVHNETSTGV 146
Query: 262 VDNVEPLAEVANEYGIWVHVDA 283
++ ++ +A+ A E+G + VDA
Sbjct: 147 LNPLKEIAKAAKEHGALLIVDA 168
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 34.6 bits (80), Expect = 0.099
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 207 LAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD-----VEAGLVPLFLCATVGTTSTTA 261
L+GV +P L+P+ L A+ LV L GT
Sbjct: 93 LSGVKL---LPVPGENGK---LTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYP-- 144
Query: 262 VDNVEPLAEVANEYGIWVHVDAAYAGSACI---CPEFRHYLNGIERVDSFSF 310
+D ++ ++ +A E G+ +H+D A +A Y +G VDS SF
Sbjct: 145 LDELKAISALAKENGLPLHLDGARLANAAAALGVALKT-YKSG---VDSVSF 192
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 34.2 bits (79), Expect = 0.15
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 197 THSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCA---- 252
T+ + +LAG A + +P + F L +LL A + L+L
Sbjct: 92 TYPGYEAAARLAG---AEVVPVPLDEEGGFLLDLELLEAAKTPKTKL----LYLNNPNNP 144
Query: 253 TVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG 287
T G + + +E LAE+A ++GI + D AYA
Sbjct: 145 T-GAVLSE--EELEELAELAKKHGILIISDEAYAE 176
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 33.8 bits (78), Expect = 0.21
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTS----TTA 261
KLAG P + + F + L A+ +A + L S T A
Sbjct: 131 KLAGGKPVPVPLDEE--ENGFKPDLEDLEAAITPKTKA----IILN------SPNNPTGA 178
Query: 262 V---DNVEPLAEVANEYGIWVHVDAAYAG 287
V + ++ + E+A E+ I + D Y
Sbjct: 179 VYSKEELKAIVELAREHDIIIISDEIYEE 207
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 33.4 bits (77), Expect = 0.26
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 23/116 (19%)
Query: 207 LAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPL-FLCATVGTTSTT----- 260
L G P LP + L L A+ + P + T ++
Sbjct: 93 LGGAQP---VPLPGAEAGKLDLED--LEAAIRPVGDIHFPPTGLISLEN-THNSAGGQVV 146
Query: 261 AVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIER-----VDSFSFS 311
+++ + + +A E+GI +H+D A +A + L I + DS S S
Sbjct: 147 SLEELREIRAIAREHGIPLHLDGARLANAAV------ALGVIVKEITSYADSVSMS 196
>gnl|CDD|237836 PRK14855, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 423
Score = 32.5 bits (74), Expect = 0.52
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 25/104 (24%)
Query: 44 PVLTQVEPGFLRSALPDSAPHRPESFETILKDVQEKII--------------PGITHWLS 89
P+ + +L S L +AP RPE L+D+++ + P T +
Sbjct: 241 PIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLIL 300
Query: 90 PNFFAFFPATVSTAG----------FLGEMLCACFNSVGFNWLA 123
P FA F A VS +G FLG +L VG WLA
Sbjct: 301 P-VFALFNAGVSVSGGGLGTVSLGVFLGLLLGKPLGVVGGAWLA 343
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 32.1 bits (73), Expect = 0.75
Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 56/264 (21%)
Query: 104 GFLGEMLCACFNSVGFNWLASP---ASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQN 160
G LG++ N++G ++ S S + E+ V+DW A + ++ K + G I N
Sbjct: 105 GALGQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEIEKNEYW-----GYITN 159
Query: 161 TTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPT 220
++ L ++ VG E ++Y S ++H + K ++ + + L +
Sbjct: 160 CGTEGNLHGIL---------VGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTLVS 210
Query: 221 -SVDANFSLSPQLLRRAVEADVEAGLV-----PLFLCATVGTTSTTAVDNVEPLAEVANE 274
+D AD +A L+ P + +GTT AVD+++ + + E
Sbjct: 211 GEIDC--------------ADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEE 256
Query: 275 YG-----IWVHVDAAYAGSACICPEFRHYLNGIERVD------SFSFSPHKWLLSYLDCC 323
G ++H D A G + P ++ +V S S S HK++ + C
Sbjct: 257 CGFSQDRFYIHCDGALFG--LMMP----FVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCG 310
Query: 324 CLWVKQPGLLVKALSTDPEYLKNK 347
+ + LS++ EYL ++
Sbjct: 311 VQITRMEH--INVLSSNVEYLASR 332
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 31.6 bits (72), Expect = 0.97
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 207 LAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVE 266
L G I T+ + +F L+P++L +A+ + + T T + + ++
Sbjct: 134 LVGAEIVEI---DTTEN-DFVLTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIK 189
Query: 267 PLAEVANEYGIWVHVDAAYA 286
LA+V +Y I+V D Y+
Sbjct: 190 ALADVLKKYDIFVISDEVYS 209
>gnl|CDD|240389 PTZ00374, PTZ00374, dihydroxyacetone phosphate acyltransferase;
Provisional.
Length = 1108
Score = 31.8 bits (72), Expect = 0.98
Identities = 36/174 (20%), Positives = 56/174 (32%), Gaps = 30/174 (17%)
Query: 174 RDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVS---------PANIRALPTSVDA 224
R R ++ V + + Q S + + A + A + S
Sbjct: 369 RKRLMEEVPNSTAARYLKGYLTQIDSVVKCITRTARAAASRSKASAYFAASKPPTASSSF 428
Query: 225 NFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAA 284
N +L LLRR V +D A L PL + A V+ +A+ E H+
Sbjct: 429 NVALYHSLLRR-VTSD--ATLRPLHPYIALVEVDWDAY--VKVIAQAVLE-----HLARQ 478
Query: 285 YAGSACICPE-FRHYLN-----GIERVDSFSFSPHKWLLSYLDCCCLWVKQPGL 332
S P Y N G ER+ K+ +W ++ GL
Sbjct: 479 IFRSPFAFPPPRPLYHNDIVFHGAERIPPTPLLTRKYF-----DDVVWTQRVGL 527
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 31.5 bits (72), Expect = 1.0
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 213 ANIRALPTSVDANFSLSPQLLRRAVEAD----VEAGLVPLFLCAT-VGTTSTTAVDNVEP 267
+ LP A+ L+P+ + A+ D L L AT GT +D +E
Sbjct: 97 GGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYP--LDELEA 154
Query: 268 LAEVANEYGIWVHVDAAYAGSACIC--PEFRHYLNGIERVDSFSFS 311
++ V E+G+ +H+D A +A + + + VDS SF
Sbjct: 155 ISAVCKEHGLPLHMDGARLANALVALGVALKTIKSY---VDSVSFC 197
>gnl|CDD|185033 PRK15074, PRK15074, inosine/guanosine kinase; Provisional.
Length = 434
Score = 31.5 bits (72), Expect = 1.2
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 19/66 (28%)
Query: 173 ARDRALDAV----GAENMHKLVVYGSDQ------THSTFAKVCK---------LAGVSPA 213
A D AL A+ A + H+ V S + T+S+ A+VCK L SP
Sbjct: 356 AGDGALSALLHDITANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPR 415
Query: 214 NIRALP 219
R LP
Sbjct: 416 LSRGLP 421
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 30.9 bits (71), Expect = 1.2
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 233 LRRAVEADV-EAGLV----PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG 287
+ RA+EA V E + + + ++N E E A E G+ V A
Sbjct: 80 IERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAF 139
Query: 288 SACICPEF 295
PE+
Sbjct: 140 GCKTDPEY 147
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 30.9 bits (70), Expect = 1.5
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 10/66 (15%)
Query: 253 TVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERV--DSFSF 310
T + + ++ ++ + E+ + G V VDA + H L ++ D +
Sbjct: 163 TAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAP--------HGLIDVQATGADFLTC 214
Query: 311 SPHKWL 316
S +K+
Sbjct: 215 SAYKFF 220
>gnl|CDD|225576 COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism].
Length = 471
Score = 30.9 bits (70), Expect = 1.9
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 28/140 (20%)
Query: 159 QNTTSDSILVT-LIAARDR--ALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANI 215
Q +++IL+ LI ++ V N H + + + H ++ G +P N+
Sbjct: 102 QGRGAENILIPILIKKGEQEPGSKMVAFSNYH----FDTTRGHI------QINGATPRNV 151
Query: 216 ---RALPTSVDANF--SLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTA------VDN 264
A T V F + + L R ++ +V A VP ++ T+ T+ +A + N
Sbjct: 152 YVDEAFDTEVKYPFKGNFDLEKLERLID-EVGADNVP-YIVLTI--TNNSAGGQPVSMAN 207
Query: 265 VEPLAEVANEYGIWVHVDAA 284
++ + E+A +Y I V +DAA
Sbjct: 208 MKAVYEIAKKYDIPVVMDAA 227
>gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD corresponds to ornithine decarboxylase (ODC),
arginine decarboxylase (ADC) and lysine decarboxylase
(LDC). ODC is a dodecamer composed of six homodimers and
catalyzes the decarboxylation of tryptophan. ADC
catalyzes the decarboxylation of arginine and LDC
catalyzes the decarboxylation of lysine. Members of this
family are widely found in all three forms of life.
Length = 294
Score = 30.3 bits (69), Expect = 2.1
Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 42/158 (26%)
Query: 148 FMFSGTGGG---VIQNTTS--DSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFA 202
F+ +GT VI D IL+ DR N HK V+ G
Sbjct: 79 FLVNGTSSSNKAVILAVCGPGDKILI------DR--------NCHKSVINGLV------- 117
Query: 203 KVCKLAGVSPANIRALPTSVDANFSL----SPQLLRRAVEADVEAGLVPLFLCATVGTTS 258
L+G P ++ + + + P+ ++A+ +A + G
Sbjct: 118 ----LSGAVPVYLK---PERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPTYYGICY 170
Query: 259 TTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFR 296
N+ + E A+ G+ V VD A+ P
Sbjct: 171 -----NLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP 203
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 30.4 bits (69), Expect = 2.1
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 376 VLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNPYP-HSGSAD 434
V R+Y + R I R E++ P L+ + G D
Sbjct: 45 VSRAYE----ELEARGYIESRPGSAPPSGRPVRLELLKPSDPELLEDDPSVIDFAGGLPD 100
Query: 435 TEMLNRKLL------DWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELIM 487
+ + L N + L + GL LR A+ A L R + E I+
Sbjct: 101 PSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIV 159
>gnl|CDD|236958 PRK11709, PRK11709, putative L-ascorbate 6-phosphate lactonase;
Provisional.
Length = 355
Score = 30.0 bits (68), Expect = 3.0
Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 29/103 (28%)
Query: 293 PEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESN 352
PE+ +LN E ++ P + + +L C +W+K G +N
Sbjct: 18 PEWGTWLN--EEIEQEVVPPGTFAMWWLGCTGIWLKTEG------------------GTN 57
Query: 353 SVVDFKDWQVGTGRRFKSLRLWMV-----LRSYGVLNLQSHIR 390
VD W GTG++ L M R GV LQ ++R
Sbjct: 58 VCVDL--W-CGTGKQTHGNPL-MKRGHQMARMAGVRKLQPNLR 96
>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily. This model
represents a subfamily of NifS-related cysteine
desulfurases involved in FeS cluster formation needed
for nitrogen fixation among other vital functions. Many
cysteine desulfurases are also active as selenocysteine
lyase and/or cysteine sulfinate desulfinase. This
subfamily is associated with the six-gene SUF system
described in E. coli and Erwinia as an FeS cluster
formation system during oxidative stress. The active
site Cys is this subfamily resembles GHHC with one or
both His conserved [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 403
Score = 29.9 bits (68), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 259 TTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHK 314
V+ VE +A++A++ G V VD A A P L+ D + FS HK
Sbjct: 172 LGTVNPVEEIAKLAHQVGAKVLVDGAQA--VPHMPVDVQALD----CDFYVFSGHK 221
>gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid
transport and metabolism].
Length = 557
Score = 30.0 bits (68), Expect = 3.2
Identities = 33/149 (22%), Positives = 49/149 (32%), Gaps = 47/149 (31%)
Query: 148 FMFSGTGGG---VIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKV 204
F+ +GT VI + V L+ DR N HK + +G
Sbjct: 90 FVVNGTSTANKAVINAVLTPGDKV-LV---DR--------NCHKSIHHGLI--------- 128
Query: 205 CKLAGVSPANIRALPTSVDANF---------SLSPQLLRRAVEADVEAGLVPLFLCATVG 255
LAG +P + L S + + + LL D E V + G
Sbjct: 129 --LAGATP--VY-LEPSRNPLYGIIGGIPLETFKEALLA---HPDAEKLAV-ITNPTYDG 179
Query: 256 TTSTTAVDNVEPLAEVANEYGIWVHVDAA 284
N+ + E+ + YG WV D A
Sbjct: 180 VCY-----NLRKIVELLHHYGAWVLYDEA 203
>gnl|CDD|233918 TIGR02546, III_secr_ATP, type III secretion apparatus
H+-transporting two-sector ATPase. [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 422
Score = 30.0 bits (68), Expect = 3.5
Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 51/135 (37%)
Query: 150 FSGTGGG-------VIQNTTSDSILVTLIAARDRAL-----DAVGAENMHK--LVVYGSD 195
F+G G G + + ++D ++ LI R R + +G E + LVV SD
Sbjct: 151 FAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210
Query: 196 QTH-------------------------------STFAKVCK---LAGVSPANIRALPTS 221
+ + FA+ + LA P P S
Sbjct: 211 RPSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPS 270
Query: 222 VDANFSLSPQLLRRA 236
V FS P+LL RA
Sbjct: 271 V---FSSLPRLLERA 282
>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme
apparently involved in regulation of cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 374
Score = 29.5 bits (67), Expect = 3.7
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 264 NVEPLAEVANEYGIWVHVDAAYA-GSACICPEFR-HYLNGIERVDSFSFSPHK 314
+++ + +A +G+ V DAA A G+ ++ + + +FSF K
Sbjct: 137 DMDAIMALAKRHGLPVIEDAAQAHGA-----TYKGKKVGSFGDIGAFSFHATK 184
>gnl|CDD|216609 pfam01619, Pro_dh, Proline dehydrogenase.
Length = 341
Score = 29.3 bits (66), Expect = 4.5
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 261 AVDNVEPLAEVANEYGIWVHVDA 283
+ + LAE A E G+ + +DA
Sbjct: 122 LLPRLRDLAEKAQEMGVALTIDA 144
>gnl|CDD|223963 COG1032, COG1032, Fe-S oxidoreductase [Energy production and
conversion].
Length = 490
Score = 29.5 bits (66), Expect = 5.3
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 65 RPESFETILKDVQEKIIPGITHWLSPNFFAFFPAT 99
E + ++ + G ++SP+ F P T
Sbjct: 365 TEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGT 399
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 29.3 bits (66), Expect = 5.5
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 228 LSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAA-YA 286
+SP+ ++RA++ + + +V + + T + +E + E+A E GI+ +DAA A
Sbjct: 125 ISPERIKRAIKTNTKLIVV------SHASNVTGTILPIEEIGELAQENGIFFILDAAQTA 178
Query: 287 GSACICPEFRHYLNGIERVDSFSFSPHKWLL 317
G I +D +F+ HK LL
Sbjct: 179 GVIPIDMT-------ELAIDMLAFTGHKGLL 202
>gnl|CDD|133467 cd06912, GT_MraY_like, This subfamily is composed of
uncharacterized bacterial glycosyltransferases in the
MraY-like family. This family contains both eukaryotic
and prokaryotic UDP-D-N-acetylhexosamine:polyprenol
phosphate D-N-acetylhexosamine-1-phosphate transferases,
which catalyze the transfer of a D-N-acetylhexosamine
1-phosphate to a membrane-bound polyprenol phosphate.
This is the initiation step of protein N-glycosylation
in eukaryotes and peptidoglycan biosynthesis in
bacteria. The three bacterial members MraY, WecA, and
WbpL/WbcO, utilize undecaprenol phosphate as the
acceptor substrate, but use different UDP-sugar donor
substrates. MraY-type transferases are highly specific
for UDP-N-acetylmuramate-pentapeptide, whereas WecA
proteins are selective for UDP-N-acetylglucosamine
(UDP-GlcNAc). The WbcO/WbpL substrate specificity has
not yet been determined, but the structure of their
biosynthetic end products implies that
UDP-N-acetyl-D-fucosamine (UDP-FucNAc) and/or
UDPN-acetyl-D-quinosamine (UDP-QuiNAc) are used. The
prokaryotic enzyme-catalyzed reactions lead to the
formation of polyprenol-linked oligosaccharides involved
in bacterial cell wall and peptidoglycan assembly.
Length = 193
Score = 28.7 bits (65), Expect = 5.8
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 76 VQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSV-GFNWLAS 124
+ +PG+ LS FA + AG FN + GFN LAS
Sbjct: 85 ITRLDLPGLDLLLSFPPFAIIFTIFAVAGV-----ANAFNIIDGFNGLAS 129
>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family
(AHBA_syn). AHBA_syn family belongs to pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The members of this CD are
involved in various biosynthetic pathways for secondary
metabolites. Some well studied proteins in this CD are
AHBA_synthase, protein product of pleiotropic regulatory
gene degT, Arnb aminotransferase and pilin
glycosylation protein. The prototype of this family, the
AHBA_synthase, is a dimeric PLP dependent enzyme.
AHBA_syn is the terminal enzyme of
3-amino-5-hydroxybenzoic acid (AHBA) formation which is
involved in the biosynthesis of ansamycin antibiotics,
including rifamycin B. Some members of this CD are
involved in 4-amino-6-deoxy-monosaccharide D-perosamine
synthesis. Perosamine is an important element in the
glycosylation of several cell products, such as
antibiotics and lipopolysaccharides of gram-positive and
gram-negative bacteria. The pilin glycosylation protein
encoded by gene pglA, is a galactosyltransferase
involved in pilin glycosylation. Additionally, this CD
consists of ArnB (PmrH) aminotransferase, a
4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying
enzyme. This CD also consists of several predicted
pyridoxal phosphate-dependent enzymes apparently
involved in regulation of cell wall biogenesis. The
catalytic lysine which is present in all characterized
PLP dependent enzymes is replaced by histidine in some
members of this CD.
Length = 352
Score = 28.7 bits (65), Expect = 6.9
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 264 NVEPLAEVANEYGIWVHVDAA------YAGSACICPEFRHYLNGIERVDSFSFSPHK 314
+++ + +A +G+ V DAA Y G F +FSF P K
Sbjct: 121 DMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT--FGD-------AGAFSFHPTK 168
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 29.2 bits (65), Expect = 7.2
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 365 GRRFKSLRLWMVLRSYGV-LNLQSHI---RSDIR-LAKMFEGFVKSDPRFEIVVPRHF 417
G+RF + W L++YG LQ + DI K++E +K D FE +P F
Sbjct: 1357 GQRFGEMECW-ALQAYGAAYTLQEMLTVKSDDINGRVKIYESIIKGDSNFECGIPESF 1413
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 28.7 bits (64), Expect = 8.8
Identities = 33/156 (21%), Positives = 61/156 (39%), Gaps = 21/156 (13%)
Query: 157 VIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIR 216
V+ T S+ + L A R R K V++ S+ K + AG R
Sbjct: 79 VVPMATGMSLALCLSALRKRPKA--------KYVIWPRIDQKSSI-KAAERAGF---EPR 126
Query: 217 ALPTSVDANFSLSPQLLRRAVEADVE--AGLVPLFLCATVGTTSTTAVDNVEPLAEVANE 274
+ T ++ ++ ++ VE +E V L + +T + + D V+ +A++ E
Sbjct: 127 LVETVLEGDYLITDV---NDVETIIEEKGEEVILAVLSTTSCFAPRSPDRVKEIAKICAE 183
Query: 275 YGIWVHVDAAYA--GSACICPEFRHYLNGIERVDSF 308
Y + V+ AY I + G R+D+
Sbjct: 184 YDVPHLVNGAYGIQSEKYIHLIQQAAKVG--RIDAV 217
>gnl|CDD|131814 TIGR02767, TraG-Ti, Ti-type conjugative transfer system protein
TraG. This protein is found in the Agrobacterium
tumefaciens Ti plasmid tra region responsible for
conjugative transfer of the entire plasmid among
Agrobacterium strains. The protein is distantly related
to the F-type conjugation system TraG protein. Both of
these systems are examples of type IV secretion systems.
Length = 623
Score = 28.7 bits (64), Expect = 9.7
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 24/108 (22%)
Query: 8 MAESVQFKPLDAQEFRKQAHQMV----------DFIADYYQNIESY-PVLTQVEPGFLRS 56
+ ++ + + FR QAH ++ +N+ +L++ EP +R+
Sbjct: 302 LTDNPRTESSRDDYFRAQAHNLLTALLAHVCLSGEYETEDRNLRRLRAILSEPEPK-VRA 360
Query: 57 ALPDSAPHRPESF--ET--ILKDVQEKIIPGI-------THWLS-PNF 92
L F E + ++ + G+ T WLS PN+
Sbjct: 361 RLRKIQEGSESDFIRENVGVFVNMTPQTFSGVYATASKDTQWLSLPNY 408
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,756,271
Number of extensions: 2524216
Number of successful extensions: 2214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2182
Number of HSP's successfully gapped: 59
Length of query: 499
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 398
Effective length of database: 6,457,848
Effective search space: 2570223504
Effective search space used: 2570223504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.5 bits)