RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 010842
(499 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 628 bits (1622), Expect = 0.0
Identities = 215/487 (44%), Positives = 305/487 (62%), Gaps = 23/487 (4%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A +FR++ +MVD++ADY + IE V V+PG+LR +P +AP P++FE IL+DV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
++ I+PG+THW SP FFA+FP S L +MLC +GF+W ASPA TELE V+MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 137 WLATMLKLPKTFMF--SGTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN--------M 186
WL ML+LP+ F+ +G GGGVIQ + S++ LV L+AAR + + + A + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 187 HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
KLV Y SDQ HS+ + + GV ++A+P+ D F++ L+ A+E D AGL+
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
P F+ AT+GTTS + DN+ + + +E IW+HVDAAYAGSA ICPEFRH LNG+E D
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 307 SFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGR 366
SF+F+PHKWLL DC +WVK+ L A DP YLK+ S + D++ WQ+ GR
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 367 RFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
RF+SL++W V R YGV LQ++IR ++L+ FE FV DPRFE+ LVCFRL
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 427 YPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
++ LN LL+ +NS +++L + G ++LRFA+ + + HV AWE I
Sbjct: 416 --------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI 467
Query: 487 MEGADRL 493
A L
Sbjct: 468 RGLAAEL 474
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 625 bits (1615), Expect = 0.0
Identities = 195/493 (39%), Positives = 287/493 (58%), Gaps = 26/493 (5%)
Query: 14 FKPLDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETIL 73
++ +E+R++ +MVD+I Y + V V+PG+LR+ LP+SAP P+S+++I
Sbjct: 3 LGSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIF 62
Query: 74 KDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIV 133
D++ I+PG+ HW SP+ A++PA S LG+ML N +GF W +SPA TELE+
Sbjct: 63 GDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMN 122
Query: 134 VMDWLATMLKLPKTFMF---SGTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN----- 185
VMDWLA ML LP+ F+ S GGGV+Q+T S+S L+ L+AAR + +
Sbjct: 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADE 182
Query: 186 ---MHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVE 242
+LV Y SDQ HS+ K ++ V ++ LP D NFSL + L++A+E D +
Sbjct: 183 SSLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQ 237
Query: 243 AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGI 302
GLVP+F+CAT+GTT A D + L + G+W+H+DAAYAG+A +CPEFR +L GI
Sbjct: 238 RGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGI 297
Query: 303 ERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQV 362
E DSF+F+P KW++ + DC WVK L + S +P YL++ + S DF WQ+
Sbjct: 298 EYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMHWQI 355
Query: 363 GTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCF 422
RRF+S++LW V+RS+GV NLQ+H+R +AK FE V++DP FEI RH LV F
Sbjct: 356 PLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVF 415
Query: 423 RLNPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAA 482
RL L +L + GR++L + ++RF V + T ++
Sbjct: 416 RLKG--------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRD 467
Query: 483 WELIMEGADRLFK 495
W LI + A +
Sbjct: 468 WNLIRDAATLILS 480
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 616 bits (1591), Expect = 0.0
Identities = 199/489 (40%), Positives = 288/489 (58%), Gaps = 26/489 (5%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A EF+ A MVDFIA+Y +NI VL +V+PG+L+ +PD+AP +PE ++ +++D+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
+ I+PG+THW SP F A+FP S + +ML +GF W+ASPA TELE+V+MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 137 WLATMLKLPKTFMFS--GTGGGVIQNTTSDSILVTLIAARDRALDAVGAEN--------M 186
WL ML+LP F+ G GGGVIQ T S+S LV L+ A+ + L V + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 187 HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
KLV Y SDQ HS+ + L GV +R++ N + L +A+E DV GL+
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGV---KLRSVQ---SENHRMRGAALEKAIEQDVAEGLI 234
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
P + T+GTT++ A D ++ V N++ +W+HVDAAYAGSA ICPE+RH + GIE D
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 307 SFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGR 366
SF+F+PHKW+L DC +W+K P +V A + DP YLK+ S D++ WQ+ GR
Sbjct: 295 SFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD--MQGSAPDYRHWQIPLGR 352
Query: 367 RFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
RF++L+LW VLR YGV NLQ+HIR AK F +D RFE+ + LVCFRL
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKG 412
Query: 427 YPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
+ N LL +N G ++L + +Y LR A+ + T + +W+ +
Sbjct: 413 --------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEV 464
Query: 487 MEGADRLFK 495
AD + +
Sbjct: 465 SAAADEMEQ 473
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 594 bits (1534), Expect = 0.0
Identities = 113/507 (22%), Positives = 205/507 (40%), Gaps = 27/507 (5%)
Query: 6 SNM-AESVQFKPLDAQEFRKQAHQMVDFIADYYQNIE--SYPVLTQVEPGFLRSALPD-- 60
SN+ A + ++ + ++VD + +Y + S VL P L +
Sbjct: 4 SNLFARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFN 63
Query: 61 -SAPHRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGF 119
PES E IL D ++ + G+ P FF + G GE L + N+ F
Sbjct: 64 LELSDHPESLEQILVDCRDTLKYGVRTG-HPRFFNQLSTGLDIIGLAGEWLTSTANTNMF 122
Query: 120 NWLASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALD 179
+ +P +E + + + ++ S G G+ + S + +++AAR +
Sbjct: 123 TYEIAPVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFP 177
Query: 180 AV---GAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRA 236
V G + KLV++ S+Q+H + K G N+ + + + P
Sbjct: 178 EVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAK 235
Query: 237 VEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFR 296
+ + G VP ++ AT GTT A D ++ +A++ +Y +W+HVDAA+ G + + R
Sbjct: 236 ILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHR 295
Query: 297 HYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVD 356
H LNGIER +S +++PHK + L C + VK+ G+L YL + + D
Sbjct: 296 HKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYD 355
Query: 357 FKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVV--P 414
D + GR + W++ ++ G + ++ I + LA+ +K+ FE+V
Sbjct: 356 TGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGE 415
Query: 415 RHFALVCFRLNPYPHSGSADTEM-------LNRKLLDWVNSTGRVYLTHT-IVGGLYMLR 466
VCF P G D+ + K+ + +G + + R
Sbjct: 416 PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFR 475
Query: 467 FAVGASLTDERHVVAAWELIMEGADRL 493
+ + + E I L
Sbjct: 476 MVISNPAATQSDIDFLIEEIERLGQDL 502
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 575 bits (1484), Expect = 0.0
Identities = 115/502 (22%), Positives = 198/502 (39%), Gaps = 24/502 (4%)
Query: 5 DSNMAESVQFKPLDAQEF-RKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAP 63
DS S+ P+ + R +VD ++ V EP L+ L
Sbjct: 25 DSEALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQ-KVCEWKEPEELKQLLDLELR 83
Query: 64 HRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLA 123
+ ES + IL+ + I + P FF + + G ++ N+ + +
Sbjct: 84 SQGESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEI 142
Query: 124 SPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAV-- 181
+P +E V+ L ++ +G G+ S S + + AR +
Sbjct: 143 APVFVLMEEEVLRKLRALVGWS-------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQ 195
Query: 182 -GAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD 240
G + L ++ S + H + K G+ ++R + D + P+ L R +
Sbjct: 196 RGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKA--DERGKMVPEDLERQIGMA 253
Query: 241 VEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLN 300
G VP + AT GTT A D +E +A+V +G+W+HVDAA+ GS + RH L+
Sbjct: 254 EAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLD 313
Query: 301 GIERVDSFSFSPHKWLLSYLDCCCLWVKQPG-LLVKALSTDPEYLKNKPSESNSVVDFKD 359
GI+R DS +++PHK L + L C L ++ LL + + YL + + +D D
Sbjct: 314 GIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGD 373
Query: 360 WQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFAL 419
V GRR L+LW++ ++ G L+ I LA+ +K FE+V+ F
Sbjct: 374 KVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVN 433
Query: 420 VCFRLNPYPHSGSADTEM-------LNRKLLDWVNSTGRVYLTHTIVGG-LYMLRFAVGA 471
VCF P G ++ + L + + G + + + G R V
Sbjct: 434 VCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVAN 493
Query: 472 SLTDERHVVAAWELIMEGADRL 493
S + + L
Sbjct: 494 SALTCADMDFLLNELERLGQDL 515
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 572 bits (1477), Expect = 0.0
Identities = 102/488 (20%), Positives = 192/488 (39%), Gaps = 29/488 (5%)
Query: 16 PLDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPD-SAPHRPESFETILK 74
L + EF + ++ + + ++P L A+ ++ ++++
Sbjct: 28 ELGSAEFASVMSHTTSAMKSVFEQVN--APYSGMDPKALEDAINAVDLDNKNAPLKSVID 85
Query: 75 DVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVV 134
DV E + P+ A E + A N +W + ++T +E V
Sbjct: 86 DVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKV 145
Query: 135 MDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENM-------- 186
++WL L + G+ + + S + L+ ARD D + ++
Sbjct: 146 VNWLCDKYDLSE------KADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDY 199
Query: 187 -HKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGL 245
KL + S ++H T K G+ + + +A+ ++ L + GL
Sbjct: 200 ADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA--NADGTMDITKLDEVIAQAKAEGL 257
Query: 246 VPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERV 305
+P + T GTT A+D+++ +A++A ++ +W+HVD AY G A I + L G+ER
Sbjct: 258 IPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVERA 316
Query: 306 DSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTG 365
S S HK + C L V K L +YL + E + + D + T
Sbjct: 317 HSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDE---LPNLVDKSIATT 372
Query: 366 RRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLN 425
+RF +L+++M +++ G L + ++++ +FE++ + V FR
Sbjct: 373 KRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRAT 432
Query: 426 PYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWEL 485
+AD + LN+ L + G L TIV G L+F + +
Sbjct: 433 H----ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSK 488
Query: 486 IMEGADRL 493
I A L
Sbjct: 489 INMLAVEL 496
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 162 bits (411), Expect = 2e-44
Identities = 74/415 (17%), Positives = 133/415 (32%), Gaps = 43/415 (10%)
Query: 22 FRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDVQEKII 81
+ Q D D+ ++ S Q++P R P IL ++
Sbjct: 36 IQSQPPARRDPTMDWLASLRS-----QIKPYRDRFPSHARLPRAGLPRAEILAEIAAMGA 90
Query: 82 PGITHWLSPN-FFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMDWLAT 140
W A + FL E+ S + P++ + E V+ A
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 141 MLKLPK---TFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQT 197
ML T + T GG ++S+L+ + RD A G
Sbjct: 151 MLGGDAAGGTVCGTVTSGG------TESLLLAMKTYRDWARATKGIT---APEAVVPVSA 201
Query: 198 HSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTT 257
H+ F K + G+ + P +DA++ +R A+ + + + +
Sbjct: 202 HAAFDKAAQYFGI---KLVRTP--LDADYRADVAAMREAITPN------TVVVAGSAPGY 250
Query: 258 STTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPE-----FRHYLNGIERVDSFSFSP 312
VD + +A +A E+GI HVDA G E + +E V S S
Sbjct: 251 PHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADT 310
Query: 313 HKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLR 372
HK+ + ++P LL ++ S + G+ S
Sbjct: 311 HKYGYGAKGTSVILYRRPDLLHYQYFIAADWPG-GLYFSPTF-------AGSRPGALSAT 362
Query: 373 LWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNPY 427
W + S G R ++ A + V++ P +I+ ++ +
Sbjct: 363 AWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGD-PLWVIAVASDEL 416
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 156 bits (395), Expect = 4e-42
Identities = 52/376 (13%), Positives = 118/376 (31%), Gaps = 39/376 (10%)
Query: 63 PHRPESFETILKDVQE-KIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNW 121
P + +++++ + + T W L A N
Sbjct: 39 PSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHL--QTIAYEKYCVANQ 96
Query: 122 L---ASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRAL 178
L PA ++E V+ + M P S TG G + ++S+L+ ++A+ AL
Sbjct: 97 LHPDVFPAVRKMESEVVSMVLRMFNAP-----SDTGCGTTTSGGTESLLLACLSAKMYAL 151
Query: 179 DAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVE 238
G + + H+ F K G+ +R + + + +++ +
Sbjct: 152 HHRGI---TEPEIIAPVTAHAGFDKAAYYFGM---KLRHVELDPT-TYQVDLGKVKKFIN 204
Query: 239 ADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG------SACIC 292
+ + L + D++E L ++A +Y + +HVD+
Sbjct: 205 KN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGY 258
Query: 293 PEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESN 352
+ V S S HK+ + + + L + +P +
Sbjct: 259 KNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWTGGLYGS-- 316
Query: 353 SVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMF-EGFVKSDPRFEI 411
G+ + W + + G + + A F + ++ P +I
Sbjct: 317 ------PTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDI 370
Query: 412 VVPRHFALVCFRLNPY 427
+ ++++ F
Sbjct: 371 MGNPRYSVISFSSKTL 386
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 149 bits (378), Expect = 3e-40
Identities = 56/414 (13%), Positives = 120/414 (28%), Gaps = 61/414 (14%)
Query: 63 PHRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWL 122
P E I ++ + A + C L
Sbjct: 59 PENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNL 118
Query: 123 A-----SPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRA 177
+ ++ + + L + K + +T SI + L AAR +
Sbjct: 119 VDPQPKASGASIMYALTNKILESFFKQL---GLNVHAIATPISTGM-SISLCLSAARKKY 174
Query: 178 LDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAV 237
VV +H + K G++ + + + + + A+
Sbjct: 175 ---------GSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLD--GDRVYVPVEDIENAI 223
Query: 238 EADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRH 297
+ ++E G P + +T+ D++ +A++ Y I ++ AY A +
Sbjct: 224 KKEIELGNRPC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLE 279
Query: 298 YLNGI--ERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVV 355
L RVD+ S K LL+ + ++ + + + P
Sbjct: 280 KLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP-------------- 325
Query: 356 DFKDWQVGTGRRFKS--LRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRF---E 410
GR + + + L S G N +++ K+ + + + +
Sbjct: 326 ---------GRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGK 376
Query: 411 IVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYM 464
+ C +N +D + KL + + R G Y+
Sbjct: 377 FLDVESPIASCISVN-------SDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYL 423
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 139 bits (351), Expect = 1e-36
Identities = 64/378 (16%), Positives = 133/378 (35%), Gaps = 44/378 (11%)
Query: 63 PHRPESFETILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWL 122
+ S + IL+++++ + N F + V +++ + +
Sbjct: 6 QEKGVSEKEILEELKKYRSLD-LKYEDGNIFGSMCSNVLP--ITRKIVDIFLETNLGDPG 62
Query: 123 ASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVG 182
+ LE + L ++L + +GG +++ L+ L ++ +
Sbjct: 63 LFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG-------TEANLMALRCIKNIWREKRR 115
Query: 183 AE--NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEAD 240
+ H +F K ++ + P + ++++ + ++ AVE
Sbjct: 116 KGLSKNEHPKIIVPITAHFSFEKGREMMDL---EYIYAP--IKEDYTIDEKFVKDAVEDY 170
Query: 241 VEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICP--EFRHY 298
G++ GTT +DN+E L+++A E I++HVDAA+ G + P + ++
Sbjct: 171 DVDGII-----GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGL--VIPFLDDKYK 223
Query: 299 LNGIER-------VDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSES 351
G+ VDS + PHK + + K G + L D YL +
Sbjct: 224 KKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYK-RYLDVDAPYLTETRQAT 282
Query: 352 NSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEI 411
GT F + VLR G + + + +K + F+
Sbjct: 283 IL---------GTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN-FKP 332
Query: 412 VVPRHFALVCFRLNPYPH 429
V+ +V Y
Sbjct: 333 VIEPILNIVAIEDEDYKE 350
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 126 bits (318), Expect = 1e-31
Identities = 53/335 (15%), Positives = 118/335 (35%), Gaps = 30/335 (8%)
Query: 105 FLGEMLCACFNSVGFNWLASPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSD 164
+++ + N + P +TEL+ ++ +A + P + G G + ++ +
Sbjct: 71 ECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS--E 128
Query: 165 SILVTLIAARDRALDAVGAE--NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSV 222
+I++ +A + + + AE + K + + K + V ++ + S
Sbjct: 129 AIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEV---ELKEVKLSE 185
Query: 223 DANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYG------ 276
+ + PQ V+ + + + A +G+T ++V+ L ++ E
Sbjct: 186 G-YYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWD 238
Query: 277 IWVHVDAAYAGSACICPEFRHYLN-GIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVK 335
+HVDAA G + + V S + S HK+ L Y + + L +
Sbjct: 239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPE 298
Query: 336 ALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRL 395
L YL + ++ + + + + L G ++ + +
Sbjct: 299 ELIFHINYL-GADQPTFTL-------NFSKGSSQVIAQYYQLIRLGHEGYRNVMENCREN 350
Query: 396 AKMFEGFVKSDPRFEIVV-PRHFALVCFRLNPYPH 429
+ ++ RF IV LV F L
Sbjct: 351 MIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSC 385
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 100 bits (251), Expect = 4e-23
Identities = 53/323 (16%), Positives = 111/323 (34%), Gaps = 40/323 (12%)
Query: 125 PASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALD---AV 181
P S +++ ++ +A + P G I ++ ++ ++ +A + R A
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS--EACMLGGMAMKWRWRKRMEAA 134
Query: 182 GAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADV 241
G +V G + K + V +R +P + P+ + A + +
Sbjct: 135 GKPTDKPNLVCGP--VQICWHKFARYWDV---ELREIPMRPG-QLFMDPKRMIEACDEN- 187
Query: 242 EAGLVPLFLCATVGTTSTTAVDNVEPLAEVANE------YGIWVHVDAAYAGSACICPEF 295
+ + T G T T + +PL + ++ I +H+DAA G + P
Sbjct: 188 -----TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGF--LAPFV 240
Query: 296 RHYLN---GIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESN 352
+ + RV S S S HK+ L+ L C + + L + L + +YL +
Sbjct: 241 APDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLG-GQIGTF 299
Query: 353 SVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIV 412
++ + + + + G + ++A + +E +
Sbjct: 300 AI-------NFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI 352
Query: 413 VPRHFA----LVCFRLNPYPHSG 431
VCF+L G
Sbjct: 353 CTGRPDEGIPAVCFKLKDGEDPG 375
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 68.9 bits (168), Expect = 1e-12
Identities = 38/243 (15%), Positives = 70/243 (28%), Gaps = 39/243 (16%)
Query: 161 TTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPT 220
T S+ + + R + A K +++ + K AG P I +
Sbjct: 125 ATGMSLTLCFLTLRHKRPKA-------KYIIW-PRIDQKSCFKSMVTAGFEPVVIENVL- 175
Query: 221 SVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTA---VDNVEPLAEVANEYGI 277
+ + ++ E G P + TT+ A D +E LA + Y I
Sbjct: 176 -EGDELRTDLKAVEAKIQ---ELG--PEHILCLHSTTACFAPRVPDRLEELAVICANYDI 229
Query: 278 WVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKAL 337
V+ AY + C + R+D+F S K + + + +
Sbjct: 230 PHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDIS 289
Query: 338 STDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAK 397
P G SL + + L S G + ++ +
Sbjct: 290 KMYP---------------------GRASASPSLDVLITLLSLGCSGYRKLLKERKEMFV 328
Query: 398 MFE 400
Sbjct: 329 YLS 331
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 65.9 bits (160), Expect = 1e-11
Identities = 40/243 (16%), Positives = 71/243 (29%), Gaps = 39/243 (16%)
Query: 161 TTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPT 220
T S+ + + R + A K +++ + K AG P I +
Sbjct: 143 ATGMSLTLCFLTLRHKRPKA-------KYIIW-PRIDQKSCFKSMITAGFEPVVIENVL- 193
Query: 221 SVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTA---VDNVEPLAEVANEYGI 277
+ + V+ E G P + TTS A D +E LA + Y I
Sbjct: 194 -EGDELRTDLKAVEAKVQ---ELG--PDCILCIHSTTSCFAPRVPDRLEELAVICANYDI 247
Query: 278 WVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKAL 337
V+ AY + C + R+D+F S K + + + + +
Sbjct: 248 PHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEIS 307
Query: 338 STDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAK 397
P G SL + + L S G + ++ +
Sbjct: 308 KMYP---------------------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFS 346
Query: 398 MFE 400
Sbjct: 347 YLS 349
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 46.3 bits (109), Expect = 2e-05
Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 35/209 (16%)
Query: 124 SPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGA 183
S +L+ + +P G G +L+ +A + V
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIPAH---QGRGA----ENILFPVLLKYKQKEGKAKNPVFI 127
Query: 184 ENMHKLVVYGSDQTHSTFAKVCKLAGVSPANI---RALPTSVDANF--SLSPQLLRRAVE 238
N H D T + +L G NI +A + ++ + L+ +
Sbjct: 128 SNFH------FDTTAA----HVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIA 177
Query: 239 ADVEAGLVPLFLCATVGTTSTTAV--DNVEPLAEVANEYGIWVHVDAAYAGSACI---CP 293
+V + T + V N++ + E+A ++GI+V +D+A
Sbjct: 178 QHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKAR 237
Query: 294 EFRHYLNGIERV--------DSFSFSPHK 314
+ ++ I+ V D+ + S K
Sbjct: 238 DPKYKNATIKEVIFDMYKYADALTMSAKK 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 85/510 (16%), Positives = 136/510 (26%), Gaps = 187/510 (36%)
Query: 31 DFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETI----------LKDVQEKI 80
+ I +Y + + + SAL + I +++++
Sbjct: 121 ELIKNYIT---ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRD-- 175
Query: 81 IPGITHWLSPNFFAFFPATVSTAGFLGEML-----CACFNSVGFN---WLASPASTELEI 132
+ +A L E++ + G N WL +P++T +
Sbjct: 176 ----LYQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK- 228
Query: 133 VVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVY 192
D+L ++ P S GVIQ L Y
Sbjct: 229 ---DYLLSI---P----ISCPLIGVIQ-----------------------------LAHY 249
Query: 193 GSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCA 252
KL G +P +R+ GLV A
Sbjct: 250 ---------VVTAKLLGFTPGELRSYLKGA----------------TGHSQGLVTAVAIA 284
Query: 253 TVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSP 312
+ ++ A ++ G C + E + S P
Sbjct: 285 ETDS-----WESFFVSVRKAITVLFFI-------GVRC------Y-----EAYPNTSLPP 321
Query: 313 HKWLLSYLDCCCLWVKQPG--LLVKALSTD-------------PE------YLKNKPSES 351
+L D P L + L+ + P L N
Sbjct: 322 S--ILE--DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--K 375
Query: 352 NSVVDFKDWQVGTGRRFKSLR-LWMVLRSYGV---LNLQSHIRSDIRLAKMFEGFVKSDP 407
N VV +G +SL L + LR L+ QS I R K F
Sbjct: 376 NLVV--------SGPP-QSLYGLNLTLRKAKAPSGLD-QSRIPFSERKLK----FSN--- 418
Query: 408 RF-EIVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWVNSTGR--VYLTHTIVGGLYM 464
RF + P H L L P + D L + + + + VY T G
Sbjct: 419 RFLPVASPFHSHL----LVPASDLINKD---LVKNNVSFNAKDIQIPVYDTFD--G--SD 467
Query: 465 LRFAVGASLTDERHVVAA------WELIME 488
LR + S++ ER V WE +
Sbjct: 468 LR-VLSGSIS-ERIVDCIIRLPVKWETTTQ 495
Score = 42.3 bits (99), Expect = 3e-04
Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 33/139 (23%)
Query: 47 TQVEPGFLRSALPDSAP-HRPESFETILKDVQEKIIPGITHWLSPNFFAFFPA----TV- 100
++ + F LP ++P H +L + I L N +F V
Sbjct: 410 SERKLKFSNRFLPVASPFHSH-----LLVPASDLIN----KDLVKNNVSFNAKDIQIPVY 460
Query: 101 ST---------AGFLGEMLCACFNSVGFNWLASPASTELEIVVMD-----WLATMLKLPK 146
T +G + E + C + W + I+ L + K
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 147 TFMFSGTGGGVIQNTTSDS 165
GTG VI T D
Sbjct: 521 D----GTGVRVIVAGTLDI 535
Score = 32.7 bits (74), Expect = 0.37
Identities = 35/194 (18%), Positives = 56/194 (28%), Gaps = 60/194 (30%)
Query: 130 LEIVVMDWLATMLKLPK--TFMFSGTGGGVIQNTTSDSILVTLIAARDRA--LDAVGAEN 185
L+IV + P T F G G I+ S I T++ + + + E+
Sbjct: 1662 LDIV--------INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH 1713
Query: 186 MHKLVVYGS----DQTHST----FA------KVCKLAGVSPANIR----------ALPTS 221
T T + K G+ PA+ AL +
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 222 VDANFSLSP---------QLLRRAVEADVEAGLVPLFLCA-----TVGTTSTTAVDN-VE 266
D S+ ++ AV D E G + A + S A+ VE
Sbjct: 1774 ADV-MSIESLVEVVFYRGMTMQVAVPRD-ELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 267 PLA-------EVAN 273
+ E+ N
Sbjct: 1832 RVGKRTGWLVEIVN 1845
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 44.7 bits (105), Expect = 6e-05
Identities = 33/205 (16%), Positives = 57/205 (27%), Gaps = 37/205 (18%)
Query: 160 NTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALP 219
TS S + A V N HK + G L G P +
Sbjct: 228 VGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQG-----------LMLTGAKP---VYMV 273
Query: 220 TSVDANF--------SLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTT---AVDNVEPL 268
S + + P+ L++ + + T+ T N +
Sbjct: 274 PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEA 333
Query: 269 AEVANEYGIWVHVDAAYAGSACICPEFR-HYLNGIERVDSFSF------SPHKWLLSYLD 321
++ + +H D A+ G A P + HY E D S HK L +
Sbjct: 334 QDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQ 393
Query: 322 CCCLWVKQPGLLVKALSTDPEYLKN 346
+ V++ + +
Sbjct: 394 ASYIHVREGRGAI-----NFSRFNQ 413
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 42.4 bits (99), Expect = 3e-04
Identities = 28/202 (13%), Positives = 54/202 (26%), Gaps = 25/202 (12%)
Query: 160 NTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPA------ 213
+S++ A + N HK S + +AG P
Sbjct: 196 GGSSNANNTVTSALVSNGDLVLFDRNNHK----------SVYNSALAMAGGRPVYLQTNR 245
Query: 214 NIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTST--TAVDNVEPLAEV 271
N + + ++ A + D E V T + N + +
Sbjct: 246 NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKR 305
Query: 272 ANEYGIWVHVDAAYAGSACICPEFRHY-------LNGIERVDSFSFSPHKWLLSYLDCCC 324
++ D+A+ G P R+ L + S HK +
Sbjct: 306 IGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQ 365
Query: 325 LWVKQPGLLVKALSTDPEYLKN 346
+ K + + D ++ N
Sbjct: 366 IHKKDSHIKGQLRYCDHKHFNN 387
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 42.0 bits (99), Expect = 3e-04
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 213 ANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVA 272
NI +P + +++++P+ + +E + G V L L D V+ +A+V
Sbjct: 115 LNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD-VKKIAKVC 173
Query: 273 NEYGIWVHVDAAYAGSACICPEFRHYLNGIER-VDSFSFSPHKWLLSYLDCCCLWVKQ 329
+EY + + V+ AYA ++ E D S HK + + + +K+
Sbjct: 174 SEYDVPLLVNGAYA-----IGRMP--VSLKEIGADFIVGSGHKSMAASGPIGVMGMKE 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.007
Identities = 41/307 (13%), Positives = 93/307 (30%), Gaps = 74/307 (24%)
Query: 231 QLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNV--EPLAEVANEYGIWVHVDAAYAGS 288
+ A + + V + + S +D++ A W
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFW---------- 69
Query: 289 ACIC--PE--FRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYL 344
+ E + ++ + R++ +K+L+S + +QP ++ + Y+
Sbjct: 70 -TLLSKQEEMVQKFVEEVLRIN------YKFLMSPIKTEQ---RQPSMMTR------MYI 113
Query: 345 KNKPSESNSVVDFKDWQVGTGRRFKSLRLWMV-LRS------YG-------VLNLQSHIR 390
+ + N F + V + + LR ++ LR G + L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CL 172
Query: 391 SDIRLAKM-FEGF---VKSDPRFEIVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWV 446
S KM F+ F +K+ E V+ L ++++P S S + + ++
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 447 NSTGRVYLTHTIVGGLYMLR----------FAVG---------ASLTDERHVVAAWELIM 487
R+ + L +L F + +TD + +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 488 EGADRLF 494
+
Sbjct: 292 DHHSMTL 298
Score = 34.1 bits (77), Expect = 0.13
Identities = 76/535 (14%), Positives = 150/535 (28%), Gaps = 182/535 (34%)
Query: 4 LDSNMAESVQFKPLD-AQEFRKQAHQMVDFIADY-YQNIESYP--VLTQVEPGFLRSALP 59
+D E Q++ D F F+ ++ ++++ P +L++ E + +
Sbjct: 7 MDFETGE-HQYQYKDILSVFED------AFVDNFDCKDVQDMPKSILSKEEIDHIIMS-- 57
Query: 60 DSAPHRPESFE---TILKDVQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNS 116
L QE+++ F+ E+L
Sbjct: 58 ---KDAVSGTLRLFWTLLSKQEEMV---------------------QKFVEEVL-----R 88
Query: 117 VGFNWLASPASTELEIVVMDW------------------------LATMLKL-------- 144
+ + +L SP TE M L LKL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 145 PKTFMF-SGTGG-GVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFA 202
P + G G G + + L + + L + + +
Sbjct: 149 PAKNVLIDGVLGSG-------KTWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 203 KVCKL----------AGVSPANIRALPTSVDANFS--LSPQLLRRA--VEADV-EAGLVP 247
+ KL +NI+ S+ A L + V +V A
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 248 LFL--CATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERV 305
F C + TT V + ++ + +D H+ +
Sbjct: 261 AFNLSCKILLTTRFKQVTDF-----LSAATTTHISLD--------------HHSMTLTPD 301
Query: 306 DSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDP-------EYLKNKPSESNSVVDFK 358
+ S LL YLDC + L + L+T+P E +++ + ++
Sbjct: 302 EVKSL-----LLKYLDC-----RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 359 DWQVGTGRRFKSLRLWMVL-----RSY----GVLNLQSHIRSDIRLAKMFEGFVKSDPRF 409
++ T SL VL R V +HI + + L+ ++ +KSD
Sbjct: 352 CDKLTTIIE-SSLN---VLEPAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVM- 405
Query: 410 EIVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYM 464
+V ++ L++ + + +Y+
Sbjct: 406 VVV----------------------NKLHKYSLVEKQPKESTISI-P----SIYL 433
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 37.3 bits (86), Expect = 0.009
Identities = 34/190 (17%), Positives = 60/190 (31%), Gaps = 32/190 (16%)
Query: 148 FMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKL 207
G G + I + ++ + + M Y D T +
Sbjct: 94 PTHQGRGA--------EQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQ----I 141
Query: 208 AGVSPANI---RALPTSVDANF--SLSPQLLRRAVEADVEAGLVPLF-LCATVGTTSTTA 261
G + N+ A T V +F + + L R +E +V VP T +
Sbjct: 142 NGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIE-EVGPNNVPYIVATITSNSAGGQP 200
Query: 262 V--DNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHY------LNGIER-----VDSF 308
V N++ + +A +Y I V +D+A + R + I R D
Sbjct: 201 VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADML 260
Query: 309 SFSPHKWLLS 318
+ S K +
Sbjct: 261 AMSAKKDAMV 270
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 36.8 bits (86), Expect = 0.012
Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 37/159 (23%)
Query: 134 VMDWLATMLKL-------PKTFMFSGTG-GGVIQNTTSDSILVTLIAARDRALDAV-GAE 184
V++ + L + + G+G V +++L + + +D+ L GA
Sbjct: 38 VVEQIRQQLTALATASEGYTSVLLQGSGSYAV------EAVLGSALGPQDKVLIVSNGA- 90
Query: 185 NMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAG 244
YG+ ++ L G++ + Q + + AD
Sbjct: 91 -------YGA-----RMVEMAGLMGIAHHAYDCGEVAR-----PDVQAIDAILNADPTIS 133
Query: 245 LVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDA 283
+ T+T ++ ++ + +A+ YG VDA
Sbjct: 134 HI----AMVHSETTTGMLNPIDEVGALAHRYGKTYIVDA 168
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 36.9 bits (86), Expect = 0.013
Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 16/87 (18%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV-----PLFLCATVGTTSTT 260
++ G + L +L + + P T
Sbjct: 151 RILG---QKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNP--------TWQCM 199
Query: 261 AVDNVEPLAEVANEYGIWVHVDAAYAG 287
+ + + E+A ++ + V D AY G
Sbjct: 200 TDEELRIIGELATKHDVIVIEDLAYFG 226
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 37.0 bits (85), Expect = 0.014
Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 18/142 (12%)
Query: 191 VYGSDQTHSTFAKVCKLAGVSPANI---RALPTSVDANF--SLSPQLLRRAVEADVEAGL 245
+ +T + G +I A ++ F + + L++ ++ +
Sbjct: 116 YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175
Query: 246 VPLFLCATVGTTSTTAV--DNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHY----- 298
+ L TV V N+ + E+ +GI V DA + +
Sbjct: 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENK 235
Query: 299 -LNGIER-----VDSFSFSPHK 314
+ I D + S K
Sbjct: 236 SIAEIVHEMFSYADGCTMSGKK 257
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 35.7 bits (83), Expect = 0.029
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 28/139 (20%)
Query: 146 KTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAV-GAENMHKLVVYGSDQTHSTFAKV 204
K + G + ++ +LI+ D L+ G VYG F
Sbjct: 60 KPVILHGEPVLGL-----EAAAASLISPDDVVLNLASG--------VYGK-----GFGYW 101
Query: 205 CKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDN 264
K I V N ++ PQ + ++A E +V T + ++
Sbjct: 102 AKRYSPHLLEI-----EVPYNEAIDPQAVADMLKAHPEITVV----SVCHHDTPSGTINP 152
Query: 265 VEPLAEVANEYGIWVHVDA 283
++ + + + +G ++ VDA
Sbjct: 153 IDAIGALVSAHGAYLIVDA 171
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 35.3 bits (82), Expect = 0.037
Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 30/139 (21%)
Query: 147 TFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYG--SDQTHSTFAKV 204
+ +G G++ ++ + ++ + L + + G + + +V
Sbjct: 73 VLLVPSSGTGIM-----EASIRNGVSKGGKVL----------VTIIGAFGKR----YKEV 113
Query: 205 CKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDN 264
+ G + + ++ P+ L A+ + + V T TST ++
Sbjct: 114 VESNGRKAVVLEY-----EPGKAVKPEDLDDALRKNPDVEAV----TITYNETSTGVLNP 164
Query: 265 VEPLAEVANEYGIWVHVDA 283
+ LA+VA E+ V VDA
Sbjct: 165 LPELAKVAKEHDKLVFVDA 183
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.050
Identities = 6/14 (42%), Positives = 9/14 (64%), Gaps = 4/14 (28%)
Query: 54 LRSAL----PDSAP 63
L+++L DSAP
Sbjct: 25 LQASLKLYADDSAP 38
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 34.0 bits (78), Expect = 0.12
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 6/83 (7%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAV--- 262
L G + + + L +++ +E G+ L T V
Sbjct: 200 ALHGGALVPY---YLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAE 256
Query: 263 DNVEPLAEVANEYGIWVHVDAAY 285
+N + + G+ + D Y
Sbjct: 257 ENQYDIVKFCKNEGLVLLADEVY 279
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 33.4 bits (77), Expect = 0.14
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 228 LSPQLLRRAVEAD-----VEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVD 282
L + A+ + V LV + VGT T +E ++ E+G+++ +D
Sbjct: 126 LRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYT--KQELEDISASCKEHGLYLFLD 183
Query: 283 AAYAGSACICPEFRHYLNGIER-VDSFSF 310
A SA P L I R D F
Sbjct: 184 GARLASALSSPVNDLTLADIARLTDMFYI 212
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 33.4 bits (77), Expect = 0.14
Identities = 16/138 (11%), Positives = 45/138 (32%), Gaps = 30/138 (21%)
Query: 147 TFMFSGTG-GGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVC 205
+ + G + +++++ +D+ L G +G F ++C
Sbjct: 73 AVFMTCSSTGSM------EAVVMNCFTKKDKVLVIDGG-------SFGH-----RFVQLC 114
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNV 265
++ + ++ ++ L+ + L + L V TST + +
Sbjct: 115 EIHEIPYVALK-----LEHGKKLTKEKLYEYDNQNFTG------LLVNVDETSTAVLYDT 163
Query: 266 EPLAEVANEYGIWVHVDA 283
+ E + ++ D
Sbjct: 164 MMIGEFCKKNNMFFVCDC 181
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 32.5 bits (75), Expect = 0.27
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 14/86 (16%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCA----TVGTTSTTA 261
K G A + + + + LR+ + + + + T G
Sbjct: 123 KSLG---AEVDLWQIEEENGWLPDLEKLRQLIRPTTKM----ICINNANNPT-GAVMDR- 173
Query: 262 VDNVEPLAEVANEYGIWVHVDAAYAG 287
+E L E+A+E G ++ D Y
Sbjct: 174 -TYLEELVEIASEVGAYILSDEVYRS 198
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 32.3 bits (74), Expect = 0.33
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 261 AVDNVEPLAEVANEYGIWVHVDA 283
A+ + + A G++V +D
Sbjct: 132 ALALLREVLREAEPRGVFVRLDM 154
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 31.9 bits (73), Expect = 0.47
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 208 AGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVP--LFLCAT---VGTTSTTAV 262
GV I + F ++ L A + + L + + +GTT T
Sbjct: 156 TGVEIVPI---HCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTR-- 210
Query: 263 DNVEPLAEVANEYGIWVHVDAAYAGS 288
+ + L + GI + D Y+G+
Sbjct: 211 NELYLLLSFVEDKGIHLISDEIYSGT 236
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 31.5 bits (72), Expect = 0.58
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 219 PTSVDANFSLSPQLLRRAVEADVEAGLVP--LFLCA----TVGTTSTTAVDNVEPLAEVA 272
NF ++ + ++ A E ++ + L L GTT D ++ +
Sbjct: 161 HCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPL-GTTLDK--DTLKSVLSFT 217
Query: 273 NEYGIWVHVDAAYAGS 288
N++ I + D YA +
Sbjct: 218 NQHNIHLVCDEIYAAT 233
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 31.4 bits (72), Expect = 0.62
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 22/87 (25%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLC------ATVGTTST 259
+L G I ALP + F D+ L LC TV
Sbjct: 136 RLTGAKE--IIALPCLQENAFFPEFP---EDTHIDI------LCLCSPNNPTGTVLNKDQ 184
Query: 260 TAVDNVEPLAEVANEYGIWVHVDAAYA 286
+ + A E+ I + DAAY+
Sbjct: 185 -----LRAIVHYAIEHEILILFDAAYS 206
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 31.0 bits (71), Expect = 0.75
Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 63/168 (37%)
Query: 147 TFMFSGTGGG----VIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYG--SDQTHST 200
+G+G + N +LV +V G S +
Sbjct: 54 VAALAGSGSLGMEAGLANLDRGPVLV---------------------LVNGAFSQR---- 88
Query: 201 FAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEA-DVEAGLVPLFLCATVGTTST 259
A++ L G+ P + P + P+ + RA++ + G TST
Sbjct: 89 VAEMAALHGLDPEVLDFPPGEP-----VDPEAVARALKRRRYRM------VALVHGETST 137
Query: 260 TAVDNVEPLAEVANEYGI-------------------WVHVDAAYAGS 288
++ E + +A E G VD A+ GS
Sbjct: 138 GVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAM-GVDYAFTGS 184
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 31.1 bits (71), Expect = 0.93
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 37/158 (23%)
Query: 134 VMDWLATMLKL------PKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMH 187
MD + L+ T SG+ + +++L L+ DR L
Sbjct: 52 TMDEVKDGLRYIFQTENRATMCVSGSAHAGM-----EAMLSNLLEEGDRVL--------- 97
Query: 188 KLVVYG--SDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGL 245
+ V G +++ ++ + G I P S + L RA+E
Sbjct: 98 -IAVNGIWAER----AVEMSERYGADVRTIEGPPDRP-----FSLETLARAIELHQ---- 143
Query: 246 VPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDA 283
P L T G +S+ + +E + ++ +++ + VDA
Sbjct: 144 -PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDA 180
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 31.1 bits (71), Expect = 0.96
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 37/158 (23%)
Query: 134 VMDWLATMLKL------PKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMH 187
M+ + + + T + GT I ++ILV+ I D+ L
Sbjct: 47 YMNEVMALYRGVFRTENRWTMLVDGTSRAGI-----EAILVSAIRPGDKVL--------- 92
Query: 188 KLVVYG--SDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGL 245
+ V+G ++ + I V +P + AV+
Sbjct: 93 -VPVFGRFGHL----LCEIARRCRAEVHTIEVPWGEV-----FTPDQVEDAVKRIR---- 138
Query: 246 VPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDA 283
P L G TSTT + + L E+ Y + DA
Sbjct: 139 -PRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDA 175
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 31.0 bits (71), Expect = 0.96
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 27/89 (30%)
Query: 207 LAGVSPANIRALPTSVDANF--SLSPQLLRRAVEADVEAGLVPLFLCATVGTTS----TT 260
A +P + + +F SL+ + L+ + L S T
Sbjct: 127 FIK---AKSLLMPLTKENDFTPSLNEKELQEVDL---------VILN------SPNNPTG 168
Query: 261 AVDNVEPLAEV---ANEYGIWVHVDAAYA 286
++E L A ++ + D Y+
Sbjct: 169 RTLSLEELISWVKLALKHDFILINDECYS 197
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 31.0 bits (71), Expect = 0.98
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 228 LSPQLLRRAVEADVE----AGLVPLFL-CAT-VGTTSTTAVDNVEPLAEVANEYGIWVHV 281
L LR V + + AT VG+ T +D +E + +V + +H+
Sbjct: 121 LDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYT--LDEIEAIGDVCKSSSLGLHM 178
Query: 282 DAAYAGSACICPEFRHYLNGIER-VDSFSF 310
D + +A + + VD+ SF
Sbjct: 179 DGSRFANALVSLGCSPAEMTWKAGVDALSF 208
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 30.7 bits (70), Expect = 1.1
Identities = 33/158 (20%), Positives = 54/158 (34%), Gaps = 37/158 (23%)
Query: 134 VMDWLATMLKL------PKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMH 187
+MD + ++L+ P T SGTG + ++ + + D L
Sbjct: 68 LMDEIQSLLRYVWQTENPLTIAVSGTGTAAM-----EATIANAVEPGDVVL--------- 113
Query: 188 KLVVYG--SDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGL 245
+ V G ++ + G I V S + LR A+E A L
Sbjct: 114 -IGVAGYFGNR----LVDMAGRYGADVRTISKPWGEV-----FSLEELRTALETHRPAIL 163
Query: 246 VPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDA 283
TST A +E + E+ E+G + VD
Sbjct: 164 -----ALVHAETSTGARQPLEGVGELCREFGTLLLVDT 196
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 30.7 bits (70), Expect = 1.1
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 31/141 (21%)
Query: 145 PKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYG--SDQTHSTFA 202
+ GT I +++L ++I D L + +YG
Sbjct: 62 RWAYPIDGTSRAGI-----EAVLASVIEPEDDVL----------IPIYGRFGYL----LT 102
Query: 203 KVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAV 262
++ + G + + +V P+ + R ++ P + G TST +
Sbjct: 103 EIAERYGANVHMLECEWGTV-----FDPEDIIREIKKVK-----PKIVAMVHGETSTGRI 152
Query: 263 DNVEPLAEVANEYGIWVHVDA 283
++ + E VDA
Sbjct: 153 HPLKAIGEACRTEDALFIVDA 173
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 30.7 bits (70), Expect = 1.3
Identities = 24/141 (17%), Positives = 45/141 (31%), Gaps = 31/141 (21%)
Query: 145 PKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYG--SDQTHSTFA 202
P T + SG+G + ++ L L+ D L G + A
Sbjct: 74 PLTLVVSGSGHCAM-----ETALFNLLEPGDSFL----------TGTNGIWGMR----AA 114
Query: 203 KVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAV 262
++ G + P + Q + + P+ L G +ST V
Sbjct: 115 EIADRIGARVHQMIKKPGEH-----YTLQEVEEGLAQHK-----PVLLFLVHGESSTGVV 164
Query: 263 DNVEPLAEVANEYGIWVHVDA 283
++ E+ + Y + VD+
Sbjct: 165 QPLDGFGELCHRYQCLLLVDS 185
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 30.8 bits (69), Expect = 1.3
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 1/112 (0%)
Query: 176 RALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRR 235
+ N ++G D+T S + L VD + +++ Q+ +
Sbjct: 437 AYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTEQ 496
Query: 236 AVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAG 287
E E L L G S+ V + + N++ W+
Sbjct: 497 LSEHQCEGFLEAYLLTGRHGIWSSYE-SFVHVIDSMLNQHAKWLEATVREIP 547
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 30.3 bits (69), Expect = 1.4
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 22/81 (27%)
Query: 213 ANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTS----TTAV---DNV 265
NI + + + F + R D+ +F C S T A + +
Sbjct: 176 GNIEYMRCTPENGFFPDLSTVGRT---DI------IFFC------SPNNPTGAAATREQL 220
Query: 266 EPLAEVANEYGIWVHVDAAYA 286
L E A + G + D+AYA
Sbjct: 221 TQLVEFAKKNGSIIVYDSAYA 241
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics,
four layer sandwich, PSI, protein structure initiative;
2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Length = 291
Score = 29.9 bits (68), Expect = 1.5
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 221 SVDANFSLSPQLLRRAVEADVEAGLVPL---FLCATVGTTSTTAVDNVEP---------L 268
AN + + RA++ + LV L F + + P L
Sbjct: 24 DKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFL 83
Query: 269 AEVANEYGIWVH 280
+ +AN++ I +
Sbjct: 84 SNLANKFKIILV 95
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 30.3 bits (69), Expect = 1.5
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 24/140 (17%)
Query: 160 NTTSDSILVT--------LIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGV- 210
+ +I +T + A+ K V++ + +A +
Sbjct: 95 DIEPQNIALTNGSQSAFFYLF---NLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLF 151
Query: 211 --SPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVG--TTSTTAVDNVE 266
+ NI LP F + + V T + + +
Sbjct: 152 VSARPNIELLPEG---QFKYHVDFEHLHIGEETGMICVSRP-----TNPTGNVITDEELM 203
Query: 267 PLAEVANEYGIWVHVDAAYA 286
L +AN++ I + +D AY
Sbjct: 204 KLDRLANQHNIPLVIDNAYG 223
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 30.3 bits (69), Expect = 1.6
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 253 TVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSP 312
T+G V ++ + ++ ++ G V VD + A P + + D + +
Sbjct: 177 TLGG-----VTDLRAMTKLVHDVGALVVVDHSAA-----APYRLLDIRETD-ADVVTVNA 225
Query: 313 HKWL 316
H W
Sbjct: 226 HAWG 229
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 29.9 bits (68), Expect = 1.9
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 18/93 (19%)
Query: 200 TFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLC------AT 253
+AG A +R++P +F + R + L A
Sbjct: 135 IHIYGAVIAG---AQVRSVPLVPGIDFFNELERAIRESIPKPRM----MILGFPSNPTAQ 187
Query: 254 VGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYA 286
E + +A +Y + V D AYA
Sbjct: 188 CVELDF-----FERVVALAKQYDVMVVHDLAYA 215
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM,
nitrilase, nucleotide-binding protein, cancer; 2.80A
{Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Length = 440
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 221 SVDANFSLSPQLLRRAVEADVEAGLVPL---FLCATVGTTSTTAVDNVEP--------LA 269
++ NF + ++ RA E +V L F +G +D
Sbjct: 27 DLEKNFQAAKNMIERAGEKK--CEMVFLPECFDF--IGLNKNEQIDLAMATDCEYMEKYR 82
Query: 270 EVANEYGIWVHV 281
E+A ++ IW+ +
Sbjct: 83 ELARKHNIWLSL 94
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 29.7 bits (67), Expect = 2.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 263 DNVEPLAEVANEYGIWVHVDAAYA 286
+ + LAE+A Y I + +D AY
Sbjct: 226 EEMAHLAEIAKRYDIPLIIDNAYG 249
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 29.4 bits (67), Expect = 2.5
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 20/72 (27%)
Query: 222 VDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDN-------VEPLAEVANE 274
N + + L A+ D LV S V+N + + E+
Sbjct: 145 PQRNGIIDLKELEAAMRDDT--ILV-----------SIMHVNNEIGVVQDIAAIGEMCRA 191
Query: 275 YGIWVHVDAAYA 286
GI HVDA +
Sbjct: 192 RGIIYHVDATQS 203
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 29.2 bits (66), Expect = 3.2
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 201 FAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTT 260
A + G +++ LS +R A+ P L T G +ST
Sbjct: 109 SADMATRYGADVRVVKSKVGQS-----LSLDEIRDALLIHK-----PSVLFLTQGDSSTG 158
Query: 261 AVDNVEPLAEVANEYGIWVHVDA 283
+ +E + + +++ + VD
Sbjct: 159 VLQGLEGVGALCHQHNCLLIVDT 181
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 29.0 bits (66), Expect = 3.2
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 200 TFA---KVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCA---- 252
FA + +G IR + L+ +L + + FLC
Sbjct: 107 GFAEYGRALAQSG---CEIRRWSLREADGWQLTDAILEALTP---DLDCL--FLCTPNNP 158
Query: 253 TVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYA 286
T G + ++ +A+ I + +D A+
Sbjct: 159 T-GLLPERPL--LQAIADRCKSLNINLILDEAFI 189
>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel
beta sheet with flanking helices, structural genomics,
PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5
PDB: 2oz5_A*
Length = 296
Score = 29.1 bits (64), Expect = 3.5
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 16/112 (14%)
Query: 193 GSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCA 252
G D+T A V + G+ I A++ S + + E
Sbjct: 183 GKDRTGFVVALVLEAVGLDRDVIV-------ADYLRSNDSVPQLRARISEMIQQRFDTEL 235
Query: 253 TVGTTSTTAVDNVEPLAEVANEY--GIWVHVDAAYAGSACICPEFRHYLNGI 302
+ T + + V EY +D Y YL
Sbjct: 236 APEVVTFTKARLSDGVLGVRAEYLAAARQTIDETYGS-------LGGYLRDA 280
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins,
T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Length = 171
Score = 28.4 bits (63), Expect = 4.2
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 195 DQTHSTFAKVCKLAGVSPANIRA-------LPTSVDANFSLSPQLLRRAVEADVEAGL 245
D S V K AG+ ++ +D + SP L+ EA + +
Sbjct: 59 DNPLSDVRLVLKQAGLEVDQVKQAIASTYSREQVLDTYPAFSPLLVELLQEAWLLSST 116
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate
aminotransferase, pyridoxal-5-phosphate, SAD, glycolate
pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae}
SCOP: c.67.1.3
Length = 385
Score = 28.8 bits (65), Expect = 4.5
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 37/112 (33%)
Query: 201 FAKVCKLAGVSPANIRALP--TSVDANFSLSPQLLRRAVEAD-VEAGLVPLFLCATVGTT 257
FA + G +R L SV +L+ + + A + T T
Sbjct: 101 FADCLRSYGAQVDVVRPLKIGESVP------LELITEKLSQNSYGA------VTVTHVDT 148
Query: 258 STTAVDNVEPLAEVANEYGI---------------------WVHVDAAYAGS 288
ST + +++ +++ + W VD A S
Sbjct: 149 STAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEW-GVDFALTAS 199
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 28.6 bits (64), Expect = 4.9
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 216 RALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEY 275
+LP +S ++ + + P+F+ A G + + LA A++
Sbjct: 33 VSLPDLALEQVDISTKIGELSSSS-------PIFINAMTGGGGKLTYEINKSLARAASQA 85
Query: 276 GIWVHVD 282
GI + V
Sbjct: 86 GIPLAVG 92
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM barrel;
2.30A {Alicyclobacillus acidocaldarius subsp}
Length = 281
Score = 28.2 bits (63), Expect = 5.2
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 10/132 (7%)
Query: 159 QNTTSDSILVTLI-AARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRA 217
++ LV + AR+ V H L + + + G+ AN+
Sbjct: 10 PTLVDETSLVLYLDLARETGYRYVDV-PFHWLEAEAERHGDAAVEAMFQRRGLVLANLGL 68
Query: 218 LP--TSVDANFSLSPQLLRRAVE--ADVEAGLVPLFLCATVGTTST----TAVDNVEPLA 269
+ F LL A + A V FL ++ + +A
Sbjct: 69 PLNLYDSEPVFLRELSLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVA 128
Query: 270 EVANEYGIWVHV 281
G+ V +
Sbjct: 129 VELLPLGMRVGL 140
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4
PDB: 1i6n_A
Length = 278
Score = 28.5 bits (64), Expect = 5.2
Identities = 22/139 (15%), Positives = 46/139 (33%), Gaps = 11/139 (7%)
Query: 179 DAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALP--TSVD-ANFSLSPQLLRR 235
D + M KL Y D + A+ + + P + AL + D + +
Sbjct: 29 DYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKG 88
Query: 236 AVEADVEAGLVPLFLCATVGTTSTT-------AVDNVEPLAEVANEYGIWVHVDAAYAGS 288
+E G+ + V +VD + L+++A YG+ + ++
Sbjct: 89 MMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQ 148
Query: 289 ACICPEFRHYLNGIERVDS 307
+ F + V+
Sbjct: 149 CTV-NTFEQAYEIVNTVNR 166
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 28.4 bits (64), Expect = 5.3
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 256 TTSTTAVDNVEPLAEVANEYGIWVHVDAAYA 286
T + + L A + G + DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 28.3 bits (64), Expect = 6.6
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTS----TTA 261
+ AG + T + F P+ +RRA+ +A L + S T A
Sbjct: 133 RFAGGVV---VEVETLPEEGFVPDPERVRRAITPRTKA----LVVN------SPNNPTGA 179
Query: 262 V---DNVEPLAEVANEYGIWVHVDAAY 285
V + +E LA +A E+ ++ D Y
Sbjct: 180 VYPKEVLEALARLAVEHDFYLVSDEIY 206
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 28.4 bits (64), Expect = 6.8
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 250 LCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDA 283
+ T TST + V+ + +Y + VD
Sbjct: 131 VALTHVETSTGVREPVKDVINKIRKYVELIVVDG 164
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 28.3 bits (64), Expect = 7.4
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 19/87 (21%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV-----PLFLCATVGTTSTT 260
+ G+ P LPT+ + P D+ +V P T +
Sbjct: 133 RALGLVP---VDLPTAPENRLQPVPADFA---GLDLAGLMVASPANP--------TGTML 178
Query: 261 AVDNVEPLAEVANEYGIWVHVDAAYAG 287
+ L E A G D Y G
Sbjct: 179 DHAAMGALIEAAQAQGASFISDEIYHG 205
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 28.2 bits (63), Expect = 7.5
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 259 TTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLS 318
T + +++ L +++E G D A++ L+ D +K+L
Sbjct: 178 TGYMHDMQALTALSHECGALAIWDLAHS-----AGAVPVDLHQAG-ADYAIGCTYKYLNG 231
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 27.9 bits (63), Expect = 9.5
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 256 TTSTTAVDNVEPLAEVANEYGIWVHVDAAYA 286
T ST + + + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,740,569
Number of extensions: 473952
Number of successful extensions: 1164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1091
Number of HSP's successfully gapped: 85
Length of query: 499
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 401
Effective length of database: 3,965,535
Effective search space: 1590179535
Effective search space used: 1590179535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)