RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010842
(499 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 405 bits (1041), Expect = e-138
Identities = 213/487 (43%), Positives = 295/487 (60%), Gaps = 23/487 (4%)
Query: 17 LDAQEFRKQAHQMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDV 76
++A +FR++ +MVD++ADY + IE V V+PG+LR +P +AP P++FE IL+DV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 77 QEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMD 136
++ I+PG+THW SP FFA+FP S L +MLC +GF+W ASPA TELE V+MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 137 WLATMLKLPKTFMFSGTG--GGVIQNTTSDSILVTLIAARDRALDAVGAENMH------- 187
WL ML+LP+ F+ G GGVIQ + S++ LV L+AAR + + + A +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 188 -KLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLV 246
KLV Y SDQ HS+ + + GV I D F++ L+ A+E D AGL+
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAAGLI 235
Query: 247 PLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD 306
P F+ AT+GTTS + DN+ + + +E IW+HVDAAYAGSA ICPEFRH LNG+E D
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 307 SFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGR 366
SF+F+PHKWLL DC +WVK+ L A DP YLK+ S + D++ WQ+ GR
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 367 RFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNP 426
RF+SL++W V R YGV LQ++IR ++L+ FE FV DPRFE+ LVCFRL
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKG 415
Query: 427 YPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELI 486
LN LL+ +NS +++L + G ++LRFA+ + + HV AWE I
Sbjct: 416 SDG--------LNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHI 467
Query: 487 MEGADRL 493
A L
Sbjct: 468 RGLAAEL 474
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 185 bits (471), Expect = 7e-54
Identities = 66/464 (14%), Positives = 136/464 (29%), Gaps = 51/464 (10%)
Query: 28 QMVDFIADYYQNIESYPVLTQVEPGFLRSALPDSAPHRPESFETILKDVQEKIIPGITHW 87
Q+ D ++ + ++ + P R + I+ D E + G
Sbjct: 3 QVTDLRSELLDSRFGAKSISTIAE---SKRFPLH-EMRDDVAFQIIND--ELYLDGNARQ 56
Query: 88 LSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVMDWLATMLKLPKT 147
N F + +++ N + P S +++ ++ +A + P
Sbjct: 57 ---NLATF--CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAP 111
Query: 148 FMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENM-HKLVVYGSDQTHSTFAKVCK 206
+G G +S++ ++ +A + R + A + K +
Sbjct: 112 --KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFAR 169
Query: 207 LAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVE 266
V I P + P+ + A + + T G T T + +
Sbjct: 170 YWDVELREIPMRPG----QLFMDPKRMIEACDENTIGV------VPTFGVTYTGNYEFPQ 219
Query: 267 P------LAEVANEYGIWVHVDAAYAGS-ACICPEFRHYLNGIERVDSFSFSPHKWLLSY 319
P + I +H+DAA G A + + RV S S S HK+ L+
Sbjct: 220 PLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAP 279
Query: 320 LDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSL-RLWMVLR 378
L C + + L + L + +YL + + R + +
Sbjct: 280 LGCGWVIWRDEEALPQELVFNVDYLG---------GQIGTFAINFSRPAGQVIAQYYEFL 330
Query: 379 SYGVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFA----LVCFRLNPYPHSGSAD 434
G + ++A + +E + VCF+L G
Sbjct: 331 RLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPG-YT 389
Query: 435 TEMLNRKLLD--WVNSTGRVYLTHTIVGGLYMLRFAVGASLTDE 476
L+ +L W + + ++R +
Sbjct: 390 LYDLSERLRLRGWQVPA---FTLGGEATDIVVMRIMCRRGFEMD 430
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 121 bits (303), Expect = 2e-30
Identities = 53/464 (11%), Positives = 134/464 (28%), Gaps = 60/464 (12%)
Query: 20 QEFRKQAHQMVDFIADYYQNIESYPVLTQ--VEPGFLRSALPDSAPHRPESFETILKD-- 75
+ K+ +++ +++ ++ + + ++ ++ L + + ++
Sbjct: 12 KNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIGE 71
Query: 76 VQEKIIPGITHWLSPNFFAFFPATVSTAGFLGEMLCACFNSVGFNWLASPASTELEIVVM 135
+ + + + F + +G L + + L ++
Sbjct: 72 REARTYSK----IHEELSSGFCHGIGRSGNLVDPQPKASGASIMYAL--------TNKIL 119
Query: 136 DWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSD 195
+ L L +T SI + L AAR + VV
Sbjct: 120 ESFFKQLGLNV-------HAIATPISTGMSISLCLSAARKK---------YGSNVVIYPY 163
Query: 196 QTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVG 255
+H + K G++ + + + + + A++ ++E G P + +T+
Sbjct: 164 ASHKSPIKAVSFVGMNMRLVETVLD--GDRVYVPVEDIENAIKKEIELGNRP-CVLSTLT 220
Query: 256 TTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKW 315
D++ +A++ Y I ++ AYA E RVD+ S K
Sbjct: 221 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSDKN 279
Query: 316 LLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVGTGRRFKSLRLWM 375
LL+ + ++ + + + P + +
Sbjct: 280 LLTPIGGGLVYSTDAEFIKEISLSYPGR---------------------ASATPVVNTLV 318
Query: 376 VLRSYGVLNLQSHIRSDIRLAKMFEGFVK---SDPRFEIVVPRHFALVCFRLNPYPHSGS 432
L S G N +++ K+ + + + + C +N P +
Sbjct: 319 SLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIA 378
Query: 433 ADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRFAVGASLTDE 476
A L + T + + + E
Sbjct: 379 AKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTE 422
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 120 bits (301), Expect = 3e-30
Identities = 49/380 (12%), Positives = 99/380 (26%), Gaps = 46/380 (12%)
Query: 124 SPASTELEIVVMDWLATMLKLPKTFMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGA 183
S ++ ++ + + + V+ T S+ + + R + A
Sbjct: 89 SSLLNKITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLRHKRPKA--- 140
Query: 184 ENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEA 243
+ + K AG P I + + + ++
Sbjct: 141 -----KYIIWPRIDQKSCFKSMVTAGFEPVVIENVLE--GDELRTDLKAVEAKIQELGPE 193
Query: 244 GLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIE 303
++ L +T + D +E LA + Y I V+ AY + C +
Sbjct: 194 HIL--CLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251
Query: 304 RVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPSESNSVVDFKDWQVG 363
R+D+F S K + + + + P
Sbjct: 252 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR-------------------- 291
Query: 364 TGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMF----EGFVKSDPRFEIVVPRHFAL 419
SL + + L S G + ++ + + ++ + P +
Sbjct: 292 -ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPIS 350
Query: 420 VCFRLNPYPHSGSADTEMLNRKLLDWVNSTGRVY--LTHTIVGGLYMLRFAVGASLTDER 477
+ L L L S R V G F A
Sbjct: 351 LAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCA 410
Query: 478 HVVAAWELIM--EGADRLFK 495
++ AA + M + D K
Sbjct: 411 YLNAAAAIGMKMQDVDLFIK 430
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 43.7 bits (102), Expect = 3e-05
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 14/140 (10%)
Query: 195 DQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATV 254
++A LAG +PT + F L+ L++ V A ++ T
Sbjct: 117 TPAFVSYAPAVILAG---GKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTG 173
Query: 255 GTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVD------SF 308
+ ++E +A+ E+ + V D Y + + F
Sbjct: 174 AVLT---KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGF 230
Query: 309 S--FSPHKWLLSYLDCCCLW 326
S F+ W L ++
Sbjct: 231 SKTFAMTGWRLGFVAAPSWI 250
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 43.1 bits (100), Expect = 5e-05
Identities = 31/261 (11%), Positives = 66/261 (25%), Gaps = 14/261 (5%)
Query: 157 VIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIR 216
+ +S++ A + N HK V + + +P
Sbjct: 86 FVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQT-NRNPYGFI 144
Query: 217 ALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYG 276
D + +L + + +GT T + N + +
Sbjct: 145 GGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGT-IYNAHEVVKRIGHLC 203
Query: 277 IWVHVDAAYAGSACICPEFRHYL-------NGIERVDSFSFSPHKWLLSYLDCCCLWVKQ 329
++ D+A+ G P R+ + S HK + + K
Sbjct: 204 DYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKD 263
Query: 330 PGLLVKALSTDPEYLKNKPS--ESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQS 387
+ + D ++ N + S S + + L ++
Sbjct: 264 SHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIE 323
Query: 388 HIRSDIRLAKMFEGFVKSDPR 408
+ +L K F P
Sbjct: 324 ARK---KLIKAGSMFRPFVPP 341
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 40.7 bits (94), Expect = 3e-04
Identities = 53/389 (13%), Positives = 100/389 (25%), Gaps = 38/389 (9%)
Query: 124 SPASTELEIVVMDWLATMLKLPKTFMF-SGTGGGVIQNTTSDSILVTLIAARDRALDAVG 182
S +L+ D + G G +L+ +A + V
Sbjct: 74 SRNYYDLK----DKAKELFNYDYIIPAHQGRGA----ENILFPVLLKYKQKEGKAKNPVF 125
Query: 183 AENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVE 242
N H + + H + V+ T D + L+ +
Sbjct: 126 ISNFH----FDTTAAHVELNGCKAINIVTEKAF-DSETYDDWKGDFDIKKLKENIAQHGA 180
Query: 243 AGLVPLFLCATVGTTSTTAVD--NVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLN 300
+V + T + V N++ + E+A ++GI+V +D+A + R
Sbjct: 181 DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKY 240
Query: 301 G-----------IERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLKNKPS 349
+ D+ + S K L + + A
Sbjct: 241 KNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTY 300
Query: 350 ESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVL--NLQSHIRSDIRLAKMFEGFVKSDP 407
+ D G + L + L L+ FV
Sbjct: 301 GGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKK 360
Query: 408 RFEIVVPRHFALVCFRLNPYPHSGSADTEMLNRKLLDWVNSTGRVYLTHTIVGGLYMLRF 467
+ F Y SG E+ + LL +TG +R
Sbjct: 361 LVPQIPGDQFPAQAVINALYLESGVRAVEIGSF-LLGRDPATGEQKHADMEF-----MRL 414
Query: 468 AVGA-SLTDE--RHVVAAWELIMEGADRL 493
+ T++ ++ A + E L
Sbjct: 415 TIARRVYTNDHMDYIADALIGLKEKFATL 443
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 39.9 bits (92), Expect = 6e-04
Identities = 26/210 (12%), Positives = 55/210 (26%), Gaps = 35/210 (16%)
Query: 124 SPASTELEIVVMDWLATMLKLPKT-FMFSGTGGGVIQNTTSDSILVTLIAARDRALDAVG 182
S + L + + + T G G + + + G
Sbjct: 73 SRSYYALA----ESVKNIFGYQYTIPTHQGRGA----------EQIYIPVLIKKREQEKG 118
Query: 183 AENMHKLVVYGSDQTHSTFAKVCKLAGVSPANI-----RALPTSVDANFSLSPQLLRRAV 237
+ + T ++ G + N+ D + + L R +
Sbjct: 119 LDRSKMVAFSNY--FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176
Query: 238 EADVEAGLVPLFLCATVGTTSTTAVD--NVEPLAEVANEYGIWVHVDAAYAGSACICPEF 295
E + + T + V N++ + +A +Y I V +D+A +
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ 236
Query: 296 RHYLNG-----------IERVDSFSFSPHK 314
R + D + S K
Sbjct: 237 REAEYKDWTIEQITRETYKYADMLAMSAKK 266
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 36.7 bits (84), Expect = 0.006
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 13/100 (13%)
Query: 228 LSPQLLRRAVEADVEA--GLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAY 285
+ L ++ + L + + ++ N+ + E+A+ YGI + DA
Sbjct: 158 IDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATR 217
Query: 286 AGSACICPEFRHY------LNGIER-----VDSFSFSPHK 314
+ + + I D + S K
Sbjct: 218 CVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 293
Score = 34.7 bits (78), Expect = 0.020
Identities = 14/117 (11%), Positives = 35/117 (29%), Gaps = 1/117 (0%)
Query: 212 PANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEV 271
P I + T + + + L+ E + G+ LF+ T G + + + +
Sbjct: 1 PEIITPIITPFTKDNRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKA 60
Query: 272 ANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVK 328
+ + + + V S++P+ + + K
Sbjct: 61 VYDVTNKIIFQ-VGGLNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFK 116
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli
[TaxId: 562]}
Length = 295
Score = 30.8 bits (68), Expect = 0.36
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 207 LAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVE 266
L GV A L T D +L LRR V+ +++ G+ L++ + G ++ E
Sbjct: 3 LRGVMAA----LLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSERE 58
Query: 267 PLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCC 324
+ E+ E A+ G + + + + +
Sbjct: 59 QVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEH 116
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 30.7 bits (67), Expect = 0.41
Identities = 31/316 (9%), Positives = 70/316 (22%), Gaps = 17/316 (5%)
Query: 176 RALDAVGAENMHKLVVYGSDQTHSTF-AKVCKLAGVSPANIRALPTSVDANFSLSPQLLR 234
+ LD + +NM + YG D + + +L A++ + N LR
Sbjct: 15 KILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALR 74
Query: 235 RAVEADV---------EAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAY 285
E G + V V + A H+
Sbjct: 75 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIES-ALHENRSEHMVIPK 133
Query: 286 AGSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWVKQPGLLVKALSTDPEYLK 345
E + ++ S S + L V L+
Sbjct: 134 LVYISNTTEVGTQ-YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARL 192
Query: 346 NKPSESNSVVDFKDWQVGTGRRFKSLRLWMVLRSYGVLNLQSHIRSDIRLAKMFEGFVKS 405
+ + +L+ L + ++
Sbjct: 193 TDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLF 252
Query: 406 DPRFEIV-VPRHFALVCFRLNPYPHSGSADTEM----LNRKLLDWVNSTGRVYLTHTIVG 460
+ + + L ++ +N+ +Y +
Sbjct: 253 FELGAHSNKMAAILKAGLEACGIRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKD 312
Query: 461 GLYMLRFAVGASLTDE 476
G ++R + ++
Sbjct: 313 GTCIMRLCTSWATEEK 328
>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
phosphofructokinase {Lyme disease spirochete (Borrelia
burgdorferi) [TaxId: 139]}
Length = 550
Score = 30.4 bits (68), Expect = 0.48
Identities = 28/182 (15%), Positives = 63/182 (34%), Gaps = 25/182 (13%)
Query: 153 TGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSP 212
TGG I +S + ++AL N++ +++ G D +++ A + + +
Sbjct: 133 TGGFDIV--SSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAAILAEYFKKNG 190
Query: 213 ANIR--ALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAE 270
NI+ +P ++DA+ L + + D + + + N+ A
Sbjct: 191 ENIQVIGVPKTIDAD--LRNDHIEISFGFD------------SATKIYSELIGNLCRDAM 236
Query: 271 VANEYGIWVHVDAAYAGSACICP---EFRHYLNGIERVDSFSFSPHKWLLSYLDCCCLWV 327
+Y +V + A + + E V + K L +D +
Sbjct: 237 STKKYWHFVKLMGRSASHVALECALKTHPNICIVSEEV----LAKKKTLSEIIDEMVSVI 292
Query: 328 KQ 329
+
Sbjct: 293 LK 294
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 296
Score = 30.3 bits (67), Expect = 0.52
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVG 255
+L + A + T + SL R V+ G L + T G
Sbjct: 7 RLGTLLTA----MVTPFSGDGSLDTATAARLANHLVDQGCDGLVVSGTTG 52
>d1qgoa_ c.92.1.2 (A:) Cobalt chelatase CbiK {Salmonella typhimurium
[TaxId: 90371]}
Length = 257
Score = 30.0 bits (67), Expect = 0.60
Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 8/146 (5%)
Query: 162 TSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAGVSPANIRALPTS 221
+S + V L+ A + + ++ + +G+ H FA L + A
Sbjct: 114 SSHNDYVQLMQALRQQMPSLRQTEKVVFMGHGAS--HHAFAAYACLDHMMTAQRFPARVG 171
Query: 222 VDANFSLSPQLLRRAVEADVE-AGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYGIWVH 280
++ L+ + V L+PL L A + A D+ + N GI
Sbjct: 172 AVESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGDSWKMRFNAAGIPAT 231
Query: 281 VDAAYAGSACICPEFRHYLNGIERVD 306
+ G P R + +
Sbjct: 232 PWLSGLGE---NPAIRAMF--VAHLH 252
>d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 28.7 bits (64), Expect = 0.62
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 395 LAKMFEGFVKSDPRFEIVVPR 415
L ++F D F+IV P
Sbjct: 104 LGQLFGMLGDFDFWFDIVTPA 124
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus
influenzae [TaxId: 727]}
Length = 293
Score = 29.2 bits (64), Expect = 1.1
Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVP-LFLCATVGTTSTTAVDN 264
L G+ A L S + + +++ + LR+ + +++ V L++ + G + +
Sbjct: 3 DLKGIFSA----LLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEE 58
Query: 265 VEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIER-VDSFSFSPHKWLLSYLDCC 323
+ + +A + A GS + E D S +
Sbjct: 59 KKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEI 118
Query: 324 CLW 326
+
Sbjct: 119 KHY 121
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase
{Pseudaminobacter salicylatoxidans [TaxId: 93369]}
Length = 351
Score = 28.9 bits (64), Expect = 1.2
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 447 NSTGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELIMEGADR 492
G Y++ T+ G+ L + + RH A+ ++EG
Sbjct: 76 GLGGNAYISPTMWAGIQYLG--PRETAPEHRHSQNAFRFVVEGEGV 119
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase
{Escherichia coli [TaxId: 562]}
Length = 292
Score = 28.7 bits (63), Expect = 1.3
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 217 ALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLAEVANEYG 276
A+ T +D ++ L++ ++ V +G + T G ++T D E A+
Sbjct: 8 AIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHD------EHADVVM 61
Query: 277 IWVHVDAAYAGSACICPEFRHY 298
+ + +
Sbjct: 62 MTLDLADGRIPVIAGTGANATA 83
>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 90
Score = 27.3 bits (61), Expect = 1.3
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 226 FSLSPQLLRRAVEADVEAGLVPL----FLCATVGTTSTTAV 262
++ LL R V E + PL L +GT +T V
Sbjct: 5 ITIRANLLDRVVGTKEELKIEPLRTGEVLMLNIGTATTAGV 45
>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 26.9 bits (60), Expect = 2.0
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 225 NFSLSPQLLRRAVEADVEAGLVPL----FLCATVGTTSTTAV 262
N + LL R V A + P+ L +VG+++T +
Sbjct: 8 NIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGI 49
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 27.2 bits (60), Expect = 2.6
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 385 LQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFAL 419
++ + + D+ LA+++ + D F+ V + +
Sbjct: 85 VRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGV 119
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10
{Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}
Length = 147
Score = 26.8 bits (59), Expect = 3.9
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 381 GVLNLQSHIRSDIRLAKMFEGFVKSDPRFEIVVPRHFALVCFRLNPYPHS---------G 431
GV + S + AK+++ K + + G
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEG 60
Query: 432 SADTEMLNRKLLDWVNSTGRVYLTHTIVGG 461
+ +L + +D ++ Y ++IVGG
Sbjct: 61 DKTSFVLQK--VDAIDEANLGY-DYSIVGG 87
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 27.6 bits (60), Expect = 3.9
Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 7/179 (3%)
Query: 150 FSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLAG 209
G G +I + + + R A+N V+ S+ + V AG
Sbjct: 82 LFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAG 141
Query: 210 VSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPLA 269
+R N +L L ++ +V C T ++ + LA
Sbjct: 142 ---LEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLA 198
Query: 270 EVANEYGIWVHVDAAYAGSA----CICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCC 324
+++ E G D AY G A R + + + S + L
Sbjct: 199 QLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGA 257
>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit
{Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 89
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 226 FSLSPQLLRRAVEADVEAGLVPL----FLCATVGTTSTTAV 262
L LL R V + E + P+ L VGT T +
Sbjct: 4 LRLEVHLLERVVGTEQELKVEPIKRKEVLLLNVGTARTMGL 44
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus
anthracis [TaxId: 1392]}
Length = 292
Score = 27.1 bits (59), Expect = 4.7
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 206 KLAGVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVG 255
++ A + T D N ++ + V ++ G + + T G
Sbjct: 3 DFGTIATA----MVTPFDINGNIDFAKTTKLVNYLIDNGTTAIVVGGTTG 48
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 26.9 bits (58), Expect = 6.6
Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 7/182 (3%)
Query: 149 MFSGTGGGVIQNTTSDSILVTLIAARDRALDAVGAENMHKLVVYGSDQTHSTFAKVCKLA 208
+ G V++ +I + + + V+ SD T + A
Sbjct: 82 LLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGA 141
Query: 209 GVSPANIRALPTSVDANFSLSPQLLRRAVEADVEAGLVPLFLCATVGTTSTTAVDNVEPL 268
G + P +A + L ++ +V L C T + D + +
Sbjct: 142 G---FEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAV 198
Query: 269 AEVANEYGIWVHVDAAYA----GSACICPEFRHYLNGIERVDSFSFSPHKWLLSYLDCCC 324
E+ + +D AY G R + + + L
Sbjct: 199 IEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGG 258
Query: 325 LW 326
L
Sbjct: 259 LS 260
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 26.5 bits (58), Expect = 7.4
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 251 CATVGTTSTTAVDNVEPLAEVANEYGIWVHVDAAYAGSACICPEFRHYLNGIERVDSFSF 310
++ + + E+A+E G ++ VD A+ + N + +
Sbjct: 166 LIVAAASAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHPNPVPYAHFVTT 222
Query: 311 SPHK 314
+ HK
Sbjct: 223 TTHK 226
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia
coli [TaxId: 562]}
Length = 308
Score = 26.3 bits (57), Expect = 9.1
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 439 NRKLLDWVNS--TGRVYLTHTIVGGLYMLRFAVGASLTDERHVVAAWELIMEG 489
R++L N G+ +T T+ GL ++ G RH +A I+EG
Sbjct: 33 VRRVLVLENPALRGQSSITATLYAGLQLI--MPGEVAPSHRHNQSALRFIVEG 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.418
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,871,073
Number of extensions: 87719
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 30
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)