Query 010844
Match_columns 499
No_of_seqs 482 out of 3941
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010844.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010844hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2495 NADH-dehydrogenase (ub 100.0 6.1E-76 1.3E-80 555.1 29.6 427 58-499 51-491 (491)
2 COG1252 Ndh NADH dehydrogenase 100.0 2.1E-73 4.6E-78 555.6 42.7 397 61-496 2-404 (405)
3 PTZ00318 NADH dehydrogenase-li 100.0 1.5E-66 3.1E-71 529.9 47.4 416 59-499 7-424 (424)
4 TIGR03169 Nterm_to_SelD pyridi 100.0 2.5E-50 5.5E-55 404.4 38.3 358 64-475 1-363 (364)
5 PRK13512 coenzyme A disulfide 100.0 6.1E-42 1.3E-46 350.5 31.5 302 62-403 1-310 (438)
6 PRK09754 phenylpropionate diox 100.0 5.2E-41 1.1E-45 339.9 32.2 317 61-438 2-333 (396)
7 PRK09564 coenzyme A disulfide 100.0 3.1E-39 6.7E-44 332.7 30.2 302 63-404 1-316 (444)
8 PRK14989 nitrite reductase sub 100.0 2.4E-39 5.2E-44 350.3 30.3 290 62-404 3-309 (847)
9 PRK04965 NADH:flavorubredoxin 100.0 9.5E-39 2E-43 321.6 29.9 286 63-404 3-301 (377)
10 TIGR02374 nitri_red_nirB nitri 100.0 8.1E-38 1.8E-42 339.1 29.9 285 65-403 1-299 (785)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 6.8E-37 1.5E-41 307.2 28.2 312 61-438 3-360 (454)
12 PLN02507 glutathione reductase 100.0 2.6E-36 5.7E-41 312.3 30.6 286 61-403 24-361 (499)
13 TIGR01421 gluta_reduc_1 glutat 100.0 3.8E-36 8.3E-41 308.3 28.0 279 62-403 2-326 (450)
14 TIGR01424 gluta_reduc_2 glutat 100.0 2.7E-36 5.9E-41 309.8 26.4 281 62-403 2-324 (446)
15 PRK06116 glutathione reductase 100.0 8.9E-36 1.9E-40 306.9 28.5 279 62-403 4-326 (450)
16 PRK08010 pyridine nucleotide-d 100.0 1.2E-35 2.6E-40 305.1 27.9 287 62-403 3-315 (441)
17 PRK05249 soluble pyridine nucl 100.0 1.8E-35 3.9E-40 305.8 29.2 288 61-403 4-333 (461)
18 TIGR01316 gltA glutamate synth 100.0 1E-36 2.2E-41 312.1 19.6 339 3-406 73-449 (449)
19 PRK06467 dihydrolipoamide dehy 100.0 1.5E-35 3.2E-40 305.7 28.3 286 61-403 3-335 (471)
20 PRK06370 mercuric reductase; V 100.0 7.1E-35 1.5E-39 301.1 32.5 283 61-404 4-333 (463)
21 PRK14694 putative mercuric red 100.0 3.2E-35 6.9E-40 303.7 29.4 288 59-403 3-333 (468)
22 PLN02546 glutathione reductase 100.0 4.2E-35 9E-40 304.6 30.3 280 62-403 79-411 (558)
23 TIGR01423 trypano_reduc trypan 100.0 6.9E-35 1.5E-39 299.9 31.6 293 61-403 2-349 (486)
24 PRK12831 putative oxidoreducta 100.0 2.4E-36 5.2E-41 309.9 20.5 341 3-407 85-461 (464)
25 PRK09853 putative selenate red 100.0 8.2E-36 1.8E-40 320.2 24.3 334 3-407 484-842 (1019)
26 PRK07845 flavoprotein disulfid 100.0 1.4E-34 3E-39 298.3 29.7 287 62-403 1-335 (466)
27 PRK14727 putative mercuric red 100.0 2.2E-34 4.8E-39 297.8 30.7 288 61-403 15-344 (479)
28 PRK06416 dihydrolipoamide dehy 100.0 3.6E-35 7.9E-40 303.5 24.8 286 61-404 3-333 (462)
29 PRK13748 putative mercuric red 100.0 1.9E-34 4.1E-39 305.4 30.6 287 61-403 97-426 (561)
30 TIGR01438 TGR thioredoxin and 100.0 1.4E-34 3E-39 298.4 28.6 288 62-404 2-343 (484)
31 PRK07251 pyridine nucleotide-d 100.0 1.3E-34 2.7E-39 297.3 27.8 287 62-403 3-314 (438)
32 TIGR02053 MerA mercuric reduct 100.0 1.2E-34 2.6E-39 299.6 27.3 282 63-403 1-327 (463)
33 TIGR03315 Se_ygfK putative sel 100.0 1E-34 2.2E-39 313.5 26.6 364 3-438 482-872 (1012)
34 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.5E-34 3.2E-39 296.2 26.3 286 76-403 1-302 (427)
35 PRK07846 mycothione reductase; 100.0 4E-34 8.6E-39 293.2 29.4 278 63-403 2-323 (451)
36 PTZ00058 glutathione reductase 100.0 3.8E-34 8.2E-39 297.2 28.8 299 61-403 47-430 (561)
37 TIGR01292 TRX_reduct thioredox 100.0 1.7E-34 3.6E-39 282.3 24.6 278 63-405 1-299 (300)
38 PTZ00052 thioredoxin reductase 100.0 8.4E-34 1.8E-38 294.0 29.9 285 62-403 5-339 (499)
39 PRK07818 dihydrolipoamide dehy 100.0 4E-34 8.8E-39 295.5 26.9 282 62-403 4-334 (466)
40 KOG1336 Monodehydroascorbate/f 100.0 3.9E-34 8.4E-39 276.9 24.4 295 62-406 74-384 (478)
41 PRK11749 dihydropyrimidine deh 100.0 8.1E-35 1.8E-39 299.8 21.0 335 3-407 85-452 (457)
42 PRK06115 dihydrolipoamide dehy 100.0 7.3E-34 1.6E-38 293.0 27.4 284 62-403 3-336 (466)
43 TIGR01350 lipoamide_DH dihydro 100.0 1.3E-33 2.9E-38 292.1 28.9 285 63-404 2-331 (461)
44 PRK06292 dihydrolipoamide dehy 100.0 1.5E-33 3.3E-38 291.4 28.5 282 61-404 2-330 (460)
45 PRK05976 dihydrolipoamide dehy 100.0 1.4E-33 3E-38 292.0 26.4 288 61-403 3-341 (472)
46 PRK10262 thioredoxin reductase 100.0 8.6E-34 1.9E-38 279.5 23.2 289 60-407 4-315 (321)
47 PRK12810 gltD glutamate syntha 100.0 4.1E-34 9E-39 295.0 21.0 343 3-407 89-465 (471)
48 PRK06912 acoL dihydrolipoamide 100.0 3.7E-33 8E-38 287.6 26.1 281 64-403 2-328 (458)
49 PRK12778 putative bifunctional 100.0 7.4E-34 1.6E-38 308.6 20.0 341 3-407 374-750 (752)
50 PRK12779 putative bifunctional 100.0 3.1E-33 6.8E-38 305.5 22.8 344 3-407 245-627 (944)
51 PRK12814 putative NADPH-depend 100.0 1.3E-33 2.8E-38 300.8 19.2 333 2-407 138-501 (652)
52 PRK06327 dihydrolipoamide dehy 100.0 4.2E-32 9E-37 280.8 29.2 286 62-403 4-345 (475)
53 TIGR03452 mycothione_red mycot 100.0 3.2E-32 6.9E-37 279.5 27.1 280 62-404 2-327 (452)
54 TIGR03140 AhpF alkyl hydropero 100.0 1.5E-32 3.3E-37 286.2 21.0 284 60-407 210-513 (515)
55 TIGR03143 AhpF_homolog putativ 100.0 3.6E-32 7.7E-37 285.4 23.5 286 62-408 4-310 (555)
56 COG1251 NirB NAD(P)H-nitrite r 100.0 2.8E-32 6.1E-37 275.5 20.8 290 62-405 3-306 (793)
57 COG0492 TrxB Thioredoxin reduc 100.0 1.3E-31 2.9E-36 256.7 24.0 284 61-407 2-301 (305)
58 PTZ00153 lipoamide dehydrogena 100.0 3.6E-31 7.9E-36 278.3 28.7 285 62-404 116-494 (659)
59 TIGR01318 gltD_gamma_fam gluta 100.0 7.2E-32 1.6E-36 277.3 21.6 343 3-407 85-466 (467)
60 PRK12775 putative trifunctiona 100.0 5.4E-32 1.2E-36 298.4 22.0 343 2-408 375-756 (1006)
61 KOG0405 Pyridine nucleotide-di 100.0 7.4E-32 1.6E-36 248.7 19.0 287 61-404 19-349 (478)
62 PRK12770 putative glutamate sy 100.0 4.1E-31 8.9E-36 263.3 21.5 299 61-407 17-350 (352)
63 PRK15317 alkyl hydroperoxide r 100.0 1E-30 2.3E-35 272.8 25.5 282 60-407 209-512 (517)
64 PRK13984 putative oxidoreducta 100.0 3.5E-31 7.6E-36 281.9 21.5 341 3-407 228-602 (604)
65 PRK12769 putative oxidoreducta 100.0 4.4E-31 9.6E-36 282.7 21.0 342 3-407 271-652 (654)
66 TIGR01317 GOGAT_sm_gam glutama 100.0 5.4E-31 1.2E-35 271.8 20.5 347 3-407 89-479 (485)
67 KOG4716 Thioredoxin reductase 100.0 1.6E-30 3.5E-35 239.0 16.7 290 59-404 16-364 (503)
68 PRK12809 putative oxidoreducta 100.0 4.9E-30 1.1E-34 273.4 21.4 342 2-407 253-635 (639)
69 KOG1335 Dihydrolipoamide dehyd 100.0 1.4E-29 3E-34 236.7 18.2 287 61-404 38-376 (506)
70 PRK12771 putative glutamate sy 100.0 1E-28 2.3E-33 260.4 20.2 331 3-407 84-444 (564)
71 COG0446 HcaD Uncharacterized N 100.0 2.4E-26 5.2E-31 235.0 26.6 291 65-404 1-309 (415)
72 TIGR01372 soxA sarcosine oxida 99.9 1.1E-24 2.3E-29 242.2 27.7 289 62-407 163-472 (985)
73 PLN02172 flavin-containing mon 99.9 2.7E-25 5.8E-30 226.9 20.3 277 61-404 9-350 (461)
74 PLN02852 ferredoxin-NADP+ redu 99.9 5.5E-25 1.2E-29 223.8 21.1 306 61-407 25-422 (491)
75 KOG1346 Programmed cell death 99.9 8.2E-25 1.8E-29 206.5 17.0 304 61-406 177-520 (659)
76 KOG3851 Sulfide:quinone oxidor 99.9 1.4E-24 3E-29 198.6 15.6 329 58-443 35-386 (446)
77 PRK06567 putative bifunctional 99.9 8E-24 1.7E-28 224.9 21.5 342 3-408 315-771 (1028)
78 KOG0404 Thioredoxin reductase 99.9 1.2E-23 2.6E-28 183.2 15.4 290 62-406 8-318 (322)
79 COG3634 AhpF Alkyl hydroperoxi 99.9 1.1E-23 2.4E-28 194.8 13.0 274 60-401 209-509 (520)
80 PF00743 FMO-like: Flavin-bind 99.9 1E-23 2.2E-28 218.0 13.5 288 62-403 1-393 (531)
81 COG0493 GltD NADPH-dependent g 99.9 1.2E-22 2.6E-27 204.7 14.3 346 3-406 67-450 (457)
82 KOG0399 Glutamate synthase [Am 99.8 4.1E-21 8.8E-26 199.2 10.1 345 4-406 1732-2119(2142)
83 PF07992 Pyr_redox_2: Pyridine 99.8 7.1E-22 1.5E-26 181.3 3.1 188 64-375 1-199 (201)
84 KOG2755 Oxidoreductase [Genera 99.8 1.2E-19 2.5E-24 162.2 10.1 258 64-374 1-321 (334)
85 COG1148 HdrA Heterodisulfide r 99.8 1.4E-17 3E-22 161.2 23.8 319 61-407 123-545 (622)
86 COG2072 TrkA Predicted flavopr 99.8 2.8E-17 6E-22 167.5 20.9 174 60-276 6-207 (443)
87 KOG1399 Flavin-containing mono 99.7 3.5E-17 7.6E-22 164.3 13.0 227 61-342 5-277 (448)
88 KOG1800 Ferredoxin/adrenodoxin 99.7 1.9E-15 4.1E-20 142.5 15.4 304 61-407 19-407 (468)
89 PF13738 Pyr_redox_3: Pyridine 99.6 7E-17 1.5E-21 148.3 3.9 167 66-277 1-200 (203)
90 PF13434 K_oxygenase: L-lysine 99.6 5.7E-15 1.2E-19 145.2 11.2 179 62-277 2-225 (341)
91 PTZ00188 adrenodoxin reductase 99.6 1.2E-13 2.6E-18 138.7 17.0 38 61-98 38-76 (506)
92 COG3486 IucD Lysine/ornithine 99.5 3.5E-12 7.5E-17 122.5 21.9 295 60-397 3-406 (436)
93 PRK05329 anaerobic glycerol-3- 99.4 2.6E-12 5.6E-17 129.3 17.2 157 234-405 219-419 (422)
94 COG4529 Uncharacterized protei 99.3 5.7E-10 1.2E-14 110.4 20.8 175 62-278 1-232 (474)
95 PF00070 Pyr_redox: Pyridine n 99.3 2.8E-11 6E-16 93.0 9.2 74 232-319 1-80 (80)
96 COG2081 Predicted flavoprotein 99.1 2.1E-09 4.5E-14 103.8 16.0 71 276-346 101-188 (408)
97 PRK09897 hypothetical protein; 99.0 5.1E-09 1.1E-13 108.6 14.0 186 62-279 1-247 (534)
98 TIGR03378 glycerol3P_GlpB glyc 98.8 7.2E-07 1.6E-11 89.1 19.4 117 283-402 262-418 (419)
99 PF01266 DAO: FAD dependent ox 98.8 1.3E-07 2.7E-12 94.5 13.9 85 257-344 121-212 (358)
100 PF03486 HI0933_like: HI0933-l 98.7 4.5E-08 9.8E-13 98.5 9.4 60 276-335 99-166 (409)
101 TIGR01292 TRX_reduct thioredox 98.7 1.8E-07 4E-12 91.1 12.0 91 232-336 2-113 (300)
102 PLN02463 lycopene beta cyclase 98.7 1.6E-07 3.5E-12 96.0 11.3 114 60-183 26-170 (447)
103 COG0579 Predicted dehydrogenas 98.6 5.6E-07 1.2E-11 90.0 12.3 64 284-347 153-223 (429)
104 PTZ00383 malate:quinone oxidor 98.5 2.9E-07 6.3E-12 95.1 9.6 61 284-345 211-283 (497)
105 TIGR02032 GG-red-SF geranylger 98.5 2.7E-07 5.8E-12 89.6 8.5 35 63-97 1-35 (295)
106 PF01134 GIDA: Glucose inhibit 98.5 1.9E-07 4.1E-12 92.2 7.0 109 64-180 1-150 (392)
107 PRK09754 phenylpropionate diox 98.5 5.8E-07 1.3E-11 91.3 10.7 94 231-336 4-113 (396)
108 PRK04176 ribulose-1,5-biphosph 98.5 1.1E-05 2.5E-10 76.4 17.6 158 232-407 27-255 (257)
109 PRK12842 putative succinate de 98.5 1E-07 2.2E-12 101.4 3.6 39 61-99 8-46 (574)
110 PLN00093 geranylgeranyl diphos 98.5 1.5E-06 3.2E-11 89.3 12.1 35 61-95 38-72 (450)
111 COG0644 FixC Dehydrogenases (f 98.4 6.7E-07 1.4E-11 90.8 8.9 40 62-101 3-42 (396)
112 PRK05192 tRNA uridine 5-carbox 98.4 7.7E-07 1.7E-11 92.8 9.3 35 61-95 3-37 (618)
113 PRK07364 2-octaprenyl-6-methox 98.4 1.1E-06 2.5E-11 89.8 10.3 36 62-97 18-53 (415)
114 PRK11728 hydroxyglutarate oxid 98.4 3.3E-06 7.1E-11 85.8 13.3 61 283-344 148-213 (393)
115 TIGR03364 HpnW_proposed FAD de 98.4 2.9E-05 6.3E-10 78.0 20.1 56 283-339 144-201 (365)
116 TIGR02023 BchP-ChlP geranylger 98.4 1.6E-06 3.6E-11 87.8 11.0 32 63-94 1-32 (388)
117 PLN02697 lycopene epsilon cycl 98.4 1.5E-06 3.2E-11 90.5 10.7 34 61-94 107-140 (529)
118 COG0029 NadB Aspartate oxidase 98.4 1.4E-05 2.9E-10 79.7 16.7 32 64-96 9-40 (518)
119 TIGR01790 carotene-cycl lycope 98.4 1.2E-06 2.6E-11 88.8 9.7 34 64-97 1-34 (388)
120 PRK06847 hypothetical protein; 98.4 1.4E-06 3E-11 87.9 10.0 35 62-96 4-38 (375)
121 PRK10157 putative oxidoreducta 98.4 1.2E-06 2.6E-11 89.7 9.5 37 61-97 4-40 (428)
122 PRK10015 oxidoreductase; Provi 98.4 1.3E-06 2.9E-11 89.4 9.6 37 61-97 4-40 (429)
123 PRK07236 hypothetical protein; 98.4 1.5E-06 3.2E-11 88.1 9.3 37 60-96 4-40 (386)
124 PRK04176 ribulose-1,5-biphosph 98.4 1.7E-06 3.6E-11 82.0 9.0 37 61-97 24-60 (257)
125 PF05834 Lycopene_cycl: Lycope 98.4 2.6E-06 5.6E-11 85.7 10.8 110 64-183 1-143 (374)
126 PRK07843 3-ketosteroid-delta-1 98.4 3.9E-07 8.4E-12 96.4 5.0 91 232-336 162-271 (557)
127 PRK07608 ubiquinone biosynthes 98.3 1.8E-06 3.9E-11 87.5 9.8 36 62-97 5-40 (388)
128 TIGR01377 soxA_mon sarcosine o 98.3 5.5E-06 1.2E-10 83.7 13.1 60 283-343 144-208 (380)
129 COG3380 Predicted NAD/FAD-depe 98.3 1E-06 2.2E-11 80.6 6.8 33 63-95 2-34 (331)
130 TIGR03169 Nterm_to_SelD pyridi 98.3 1.9E-06 4E-11 86.6 9.4 94 232-336 1-108 (364)
131 PF13454 NAD_binding_9: FAD-NA 98.3 4.1E-06 8.9E-11 73.1 10.1 31 66-96 1-36 (156)
132 PRK08773 2-octaprenyl-3-methyl 98.3 2.2E-06 4.9E-11 87.0 9.7 37 60-96 4-40 (392)
133 PRK07251 pyridine nucleotide-d 98.3 2.6E-06 5.6E-11 87.8 10.1 99 62-185 157-256 (438)
134 COG1249 Lpd Pyruvate/2-oxoglut 98.3 3.7E-06 8E-11 85.6 10.5 104 61-186 172-276 (454)
135 TIGR00292 thiazole biosynthesi 98.3 3.8E-06 8.2E-11 79.4 9.8 38 61-98 20-57 (254)
136 PRK09564 coenzyme A disulfide 98.3 3.5E-06 7.6E-11 87.1 10.2 93 232-336 2-116 (444)
137 TIGR02028 ChlP geranylgeranyl 98.3 3.5E-06 7.6E-11 85.5 10.0 34 63-96 1-34 (398)
138 TIGR00292 thiazole biosynthesi 98.3 6.5E-05 1.4E-09 71.0 17.7 157 232-406 23-253 (254)
139 PRK06184 hypothetical protein; 98.3 4.2E-06 9.1E-11 87.8 10.6 37 61-97 2-38 (502)
140 PRK06834 hypothetical protein; 98.3 3.7E-06 8E-11 87.5 10.0 35 62-96 3-37 (488)
141 TIGR00275 flavoprotein, HI0933 98.3 1.5E-05 3.2E-10 81.0 14.1 67 268-335 87-160 (400)
142 PRK07494 2-octaprenyl-6-methox 98.3 5.9E-06 1.3E-10 83.8 11.2 36 61-96 6-41 (388)
143 PTZ00318 NADH dehydrogenase-li 98.3 3.9E-06 8.5E-11 86.0 9.8 94 229-336 9-126 (424)
144 PRK06912 acoL dihydrolipoamide 98.3 4.8E-06 1E-10 86.3 10.5 101 62-185 170-271 (458)
145 COG1635 THI4 Ribulose 1,5-bisp 98.3 6.8E-07 1.5E-11 79.3 3.5 39 62-100 30-68 (262)
146 COG1252 Ndh NADH dehydrogenase 98.2 2.7E-06 5.8E-11 84.5 7.9 95 231-337 4-113 (405)
147 PRK05976 dihydrolipoamide dehy 98.2 5.4E-06 1.2E-10 86.3 10.7 102 62-185 180-284 (472)
148 PLN02661 Putative thiazole syn 98.2 1.1E-05 2.4E-10 78.7 11.8 38 60-97 90-128 (357)
149 TIGR01350 lipoamide_DH dihydro 98.2 4.9E-06 1.1E-10 86.4 10.2 102 62-185 170-272 (461)
150 PRK08849 2-octaprenyl-3-methyl 98.2 3.7E-06 8.1E-11 85.1 9.0 34 62-95 3-36 (384)
151 PRK06416 dihydrolipoamide dehy 98.2 5.6E-06 1.2E-10 86.0 10.4 104 62-186 172-276 (462)
152 PF13450 NAD_binding_8: NAD(P) 98.2 1.1E-06 2.4E-11 64.7 3.5 32 67-98 1-32 (68)
153 PRK05732 2-octaprenyl-6-methox 98.2 4.8E-06 1E-10 84.7 9.4 34 61-94 2-38 (395)
154 PLN02487 zeta-carotene desatur 98.2 3.6E-05 7.8E-10 80.9 15.9 38 61-98 74-111 (569)
155 PRK09126 hypothetical protein; 98.2 6.8E-06 1.5E-10 83.4 10.3 35 62-96 3-37 (392)
156 PF00070 Pyr_redox: Pyridine n 98.2 2.5E-06 5.4E-11 65.3 5.4 71 64-149 1-72 (80)
157 TIGR01424 gluta_reduc_2 glutat 98.2 8.8E-06 1.9E-10 84.0 11.1 91 232-336 4-143 (446)
158 PRK13339 malate:quinone oxidor 98.2 1.4E-05 3.1E-10 82.4 12.4 62 284-345 184-257 (497)
159 PRK08163 salicylate hydroxylas 98.2 4.4E-06 9.5E-11 85.0 8.6 36 62-97 4-39 (396)
160 PRK05868 hypothetical protein; 98.2 8.6E-06 1.9E-10 82.0 10.5 36 62-97 1-36 (372)
161 TIGR01320 mal_quin_oxido malat 98.2 1.9E-05 4.1E-10 81.9 13.2 63 283-345 177-250 (483)
162 PRK08020 ubiF 2-octaprenyl-3-m 98.2 1E-05 2.2E-10 82.1 11.1 35 61-95 4-38 (391)
163 TIGR03140 AhpF alkyl hydropero 98.2 1.1E-05 2.4E-10 84.7 11.5 94 229-336 211-324 (515)
164 PRK08244 hypothetical protein; 98.2 8.8E-06 1.9E-10 85.2 10.3 34 63-96 3-36 (493)
165 PRK11445 putative oxidoreducta 98.2 1.3E-05 2.9E-10 80.0 11.0 34 62-96 1-34 (351)
166 PRK05714 2-octaprenyl-3-methyl 98.2 9.2E-06 2E-10 82.9 10.1 33 63-95 3-35 (405)
167 TIGR01984 UbiH 2-polyprenyl-6- 98.2 1.2E-05 2.6E-10 81.4 10.7 33 64-96 1-34 (382)
168 PRK06116 glutathione reductase 98.2 9.6E-06 2.1E-10 83.9 10.2 90 232-336 6-144 (450)
169 PRK06753 hypothetical protein; 98.1 4.8E-06 1E-10 83.9 7.6 35 63-97 1-35 (373)
170 PRK08013 oxidoreductase; Provi 98.1 1.4E-05 3.1E-10 81.3 11.1 35 62-96 3-37 (400)
171 PRK08850 2-octaprenyl-6-methox 98.1 9.6E-06 2.1E-10 82.7 9.8 33 62-94 4-36 (405)
172 PRK04965 NADH:flavorubredoxin 98.1 1.2E-05 2.7E-10 81.1 10.4 100 62-184 141-241 (377)
173 PRK06327 dihydrolipoamide dehy 98.1 1.3E-05 2.9E-10 83.4 10.9 104 62-185 183-287 (475)
174 TIGR02053 MerA mercuric reduct 98.1 9.6E-06 2.1E-10 84.2 9.8 104 62-186 166-270 (463)
175 TIGR01373 soxB sarcosine oxida 98.1 6E-05 1.3E-09 77.0 15.5 59 284-343 183-248 (407)
176 PRK06370 mercuric reductase; V 98.1 1.1E-05 2.5E-10 83.7 10.3 103 62-185 171-274 (463)
177 COG1635 THI4 Ribulose 1,5-bisp 98.1 0.0001 2.2E-09 65.8 14.4 158 232-407 32-260 (262)
178 PRK15317 alkyl hydroperoxide r 98.1 1.9E-05 4.2E-10 83.0 12.0 93 230-336 211-323 (517)
179 TIGR01988 Ubi-OHases Ubiquinon 98.1 1.5E-05 3.1E-10 80.7 10.8 33 64-96 1-33 (385)
180 TIGR03385 CoA_CoA_reduc CoA-di 98.1 1E-05 2.2E-10 83.2 9.6 98 62-184 137-235 (427)
181 PRK13512 coenzyme A disulfide 98.1 1.3E-05 2.8E-10 82.5 10.3 93 232-336 3-118 (438)
182 PRK07846 mycothione reductase; 98.1 1.4E-05 3E-10 82.5 10.5 100 62-186 166-266 (451)
183 PRK07333 2-octaprenyl-6-methox 98.1 7.9E-06 1.7E-10 83.3 8.5 35 62-96 1-37 (403)
184 TIGR02374 nitri_red_nirB nitri 98.1 1.3E-05 2.9E-10 88.1 10.6 93 233-336 1-109 (785)
185 PRK06126 hypothetical protein; 98.1 1.7E-05 3.7E-10 84.2 11.1 36 61-96 6-41 (545)
186 PRK14989 nitrite reductase sub 98.1 2.3E-05 4.9E-10 86.5 12.3 96 231-336 4-114 (847)
187 COG0654 UbiH 2-polyprenyl-6-me 98.1 9.3E-06 2E-10 82.2 8.5 33 62-94 2-34 (387)
188 PLN02985 squalene monooxygenas 98.1 2E-05 4.3E-10 82.4 11.1 36 60-95 41-76 (514)
189 PRK06183 mhpA 3-(3-hydroxyphen 98.1 1.8E-05 4E-10 83.7 10.8 36 61-96 9-44 (538)
190 PRK08132 FAD-dependent oxidore 98.1 1.6E-05 3.4E-10 84.4 9.8 37 61-97 22-58 (547)
191 PRK07588 hypothetical protein; 98.1 1.6E-05 3.5E-10 80.6 9.3 35 63-97 1-35 (391)
192 COG2509 Uncharacterized FAD-de 98.0 8.3E-05 1.8E-09 73.4 13.5 72 277-348 166-247 (486)
193 PRK07190 hypothetical protein; 98.0 2.1E-05 4.6E-10 81.8 10.0 35 62-96 5-39 (487)
194 PRK05249 soluble pyridine nucl 98.0 2.1E-05 4.6E-10 81.6 9.8 100 62-185 175-275 (461)
195 PRK07818 dihydrolipoamide dehy 98.0 2.9E-05 6.3E-10 80.7 10.5 103 62-185 172-276 (466)
196 PF13738 Pyr_redox_3: Pyridine 98.0 2.8E-05 6.1E-10 71.0 9.1 88 234-335 1-138 (203)
197 PRK08401 L-aspartate oxidase; 98.0 3.4E-05 7.3E-10 80.1 10.6 34 62-95 1-34 (466)
198 TIGR03452 mycothione_red mycot 98.0 3.4E-05 7.3E-10 79.7 10.5 99 62-185 169-268 (452)
199 PRK06115 dihydrolipoamide dehy 98.0 3.4E-05 7.4E-10 80.1 10.6 103 62-185 174-279 (466)
200 PRK09853 putative selenate red 98.0 2.7E-05 5.8E-10 85.9 10.1 89 228-336 537-636 (1019)
201 PF01946 Thi4: Thi4 family; PD 98.0 3.5E-06 7.7E-11 75.3 2.6 38 62-99 17-54 (230)
202 PRK14694 putative mercuric red 98.0 3.2E-05 6.8E-10 80.4 10.1 98 62-185 178-276 (468)
203 PRK06847 hypothetical protein; 98.0 6.1E-05 1.3E-09 75.9 12.0 53 284-336 107-164 (375)
204 PRK06475 salicylate hydroxylas 98.0 2.5E-05 5.4E-10 79.5 8.9 34 63-96 3-36 (400)
205 TIGR00136 gidA glucose-inhibit 98.0 3.6E-05 7.9E-10 80.3 10.1 33 63-95 1-33 (617)
206 PLN02507 glutathione reductase 98.0 3.2E-05 7E-10 80.7 9.9 100 62-185 203-303 (499)
207 TIGR01789 lycopene_cycl lycope 98.0 2.8E-05 6E-10 78.0 9.0 32 64-95 1-34 (370)
208 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 1E-05 2.2E-10 81.4 5.7 33 64-96 2-34 (433)
209 PRK06467 dihydrolipoamide dehy 98.0 3.8E-05 8.2E-10 79.8 10.1 103 62-185 174-277 (471)
210 PRK12779 putative bifunctional 98.0 2E-05 4.3E-10 87.8 8.3 89 229-334 305-403 (944)
211 PF01134 GIDA: Glucose inhibit 97.9 6.7E-05 1.5E-09 74.4 11.1 88 232-333 1-150 (392)
212 PF12831 FAD_oxidored: FAD dep 97.9 5.1E-06 1.1E-10 85.1 3.4 36 64-99 1-36 (428)
213 KOG0029 Amine oxidase [Seconda 97.9 7.5E-06 1.6E-10 84.5 4.5 41 60-100 13-53 (501)
214 PRK11749 dihydropyrimidine deh 97.9 2.1E-05 4.6E-10 81.5 7.9 90 228-335 138-237 (457)
215 PRK08010 pyridine nucleotide-d 97.9 3.9E-05 8.4E-10 79.2 9.8 99 62-185 158-257 (441)
216 PRK07845 flavoprotein disulfid 97.9 4.2E-05 9.1E-10 79.4 9.8 100 62-185 177-277 (466)
217 PRK10262 thioredoxin reductase 97.9 8.5E-05 1.8E-09 73.2 11.5 102 62-185 146-251 (321)
218 TIGR01421 gluta_reduc_1 glutat 97.9 6E-05 1.3E-09 77.8 10.6 90 232-336 4-142 (450)
219 COG0446 HcaD Uncharacterized N 97.9 3.3E-05 7.2E-10 78.8 8.4 100 62-183 136-238 (415)
220 TIGR03219 salicylate_mono sali 97.9 3.5E-05 7.6E-10 78.9 8.4 35 63-97 1-36 (414)
221 PTZ00058 glutathione reductase 97.9 6E-05 1.3E-09 79.4 9.9 101 62-185 237-339 (561)
222 PRK06292 dihydrolipoamide dehy 97.9 7.1E-05 1.5E-09 77.7 10.3 101 62-185 169-271 (460)
223 TIGR03143 AhpF_homolog putativ 97.9 0.0001 2.2E-09 78.2 11.4 90 232-336 6-115 (555)
224 PLN02463 lycopene beta cyclase 97.9 9.1E-05 2E-09 75.9 10.6 91 232-336 30-170 (447)
225 KOG2820 FAD-dependent oxidored 97.8 0.00025 5.5E-09 67.2 12.1 85 255-341 123-218 (399)
226 PLN02172 flavin-containing mon 97.8 0.00031 6.7E-09 72.5 13.9 93 230-336 10-176 (461)
227 PF01494 FAD_binding_3: FAD bi 97.8 1.3E-05 2.8E-10 79.9 3.7 36 63-98 2-37 (356)
228 COG3349 Uncharacterized conser 97.8 1.5E-05 3.3E-10 80.2 4.0 38 63-100 1-38 (485)
229 TIGR01316 gltA glutamate synth 97.8 4.1E-05 8.9E-10 79.0 7.2 90 229-336 132-232 (449)
230 PRK14727 putative mercuric red 97.8 9.4E-05 2E-09 77.1 9.8 98 62-185 188-286 (479)
231 COG0445 GidA Flavin-dependent 97.8 2E-05 4.4E-10 79.2 4.5 112 62-181 4-157 (621)
232 PRK13748 putative mercuric red 97.8 8.7E-05 1.9E-09 79.1 9.6 98 62-185 270-368 (561)
233 PF07992 Pyr_redox_2: Pyridine 97.8 1.6E-05 3.5E-10 72.4 3.4 91 232-336 1-123 (201)
234 COG1233 Phytoene dehydrogenase 97.8 2.2E-05 4.7E-10 81.8 4.5 50 284-333 224-279 (487)
235 PRK12831 putative oxidoreducta 97.8 5.3E-05 1.1E-09 78.4 7.2 92 228-336 138-242 (464)
236 PLN02661 Putative thiazole syn 97.8 0.0017 3.7E-08 63.5 17.0 159 232-407 94-328 (357)
237 PTZ00153 lipoamide dehydrogena 97.7 0.00017 3.6E-09 77.3 10.8 111 62-186 312-431 (659)
238 PLN02852 ferredoxin-NADP+ redu 97.7 5.2E-05 1.1E-09 78.1 6.8 91 229-336 25-127 (491)
239 PRK07236 hypothetical protein; 97.7 0.00014 3E-09 73.7 9.8 92 231-336 7-155 (386)
240 PTZ00052 thioredoxin reductase 97.7 0.00014 2.9E-09 76.2 9.9 99 62-185 182-281 (499)
241 TIGR01789 lycopene_cycl lycope 97.7 0.00018 3.9E-09 72.3 10.2 92 233-336 2-139 (370)
242 PRK12770 putative glutamate sy 97.7 6.6E-05 1.4E-09 75.0 7.1 92 229-334 17-129 (352)
243 PRK07208 hypothetical protein; 97.7 2.8E-05 6.1E-10 81.2 4.5 41 60-100 2-42 (479)
244 PRK11883 protoporphyrinogen ox 97.7 2.5E-05 5.3E-10 80.9 4.1 37 63-99 1-39 (451)
245 PLN02268 probable polyamine ox 97.7 2.9E-05 6.3E-10 80.0 4.5 38 63-100 1-38 (435)
246 TIGR01438 TGR thioredoxin and 97.7 0.00014 3.1E-09 75.7 9.6 102 62-185 180-282 (484)
247 KOG1336 Monodehydroascorbate/f 97.7 0.00014 3.1E-09 72.2 8.9 105 62-188 213-319 (478)
248 PLN02546 glutathione reductase 97.7 0.00023 4.9E-09 75.1 11.0 90 232-336 81-229 (558)
249 KOG2853 Possible oxidoreductas 97.7 0.00064 1.4E-08 64.5 12.6 38 61-98 85-126 (509)
250 PRK07045 putative monooxygenas 97.7 2.8E-05 6.1E-10 78.8 4.1 37 61-97 4-40 (388)
251 PRK12778 putative bifunctional 97.7 7.3E-05 1.6E-09 82.3 7.6 92 228-336 429-531 (752)
252 PRK06996 hypothetical protein; 97.7 0.00019 4.1E-09 73.0 10.0 34 62-95 11-48 (398)
253 TIGR03315 Se_ygfK putative sel 97.7 0.00013 2.7E-09 81.0 9.2 89 229-336 536-634 (1012)
254 TIGR01317 GOGAT_sm_gam glutama 97.7 0.00013 2.9E-09 75.9 8.9 87 229-334 142-239 (485)
255 PRK12775 putative trifunctiona 97.7 8.3E-05 1.8E-09 83.7 7.6 89 229-334 429-528 (1006)
256 TIGR01423 trypano_reduc trypan 97.7 0.00017 3.7E-09 75.0 9.4 98 62-185 187-291 (486)
257 PRK06834 hypothetical protein; 97.7 0.00045 9.9E-09 72.0 12.3 61 285-346 101-166 (488)
258 KOG1335 Dihydrolipoamide dehyd 97.7 0.00011 2.4E-09 70.7 6.9 103 62-185 211-317 (506)
259 COG0492 TrxB Thioredoxin reduc 97.7 0.00039 8.4E-09 67.4 10.9 90 232-336 5-116 (305)
260 TIGR01318 gltD_gamma_fam gluta 97.6 0.00011 2.4E-09 76.1 7.6 89 229-336 140-239 (467)
261 PRK08773 2-octaprenyl-3-methyl 97.6 0.00046 1E-08 70.0 11.8 60 285-345 114-178 (392)
262 PRK06185 hypothetical protein; 97.6 4.6E-05 1E-09 77.8 4.3 36 61-96 5-40 (407)
263 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 4.3E-05 9.3E-10 77.5 4.0 34 63-96 3-36 (390)
264 PRK07233 hypothetical protein; 97.6 4.5E-05 9.7E-10 78.5 4.1 50 284-333 198-252 (434)
265 TIGR02032 GG-red-SF geranylger 97.6 0.0005 1.1E-08 66.6 10.9 91 232-336 2-149 (295)
266 TIGR00562 proto_IX_ox protopor 97.6 5.3E-05 1.2E-09 78.7 4.3 38 62-99 2-43 (462)
267 PRK06617 2-octaprenyl-6-methox 97.6 5.9E-05 1.3E-09 76.0 4.4 33 62-94 1-33 (374)
268 PRK12409 D-amino acid dehydrog 97.6 5.4E-05 1.2E-09 77.3 4.2 34 63-96 2-35 (410)
269 PLN02576 protoporphyrinogen ox 97.6 6.2E-05 1.3E-09 79.0 4.7 40 61-100 11-51 (496)
270 PRK07538 hypothetical protein; 97.6 5.9E-05 1.3E-09 77.2 4.1 34 63-96 1-34 (413)
271 PRK08243 4-hydroxybenzoate 3-m 97.5 6.6E-05 1.4E-09 76.2 4.0 35 62-96 2-36 (392)
272 PRK12416 protoporphyrinogen ox 97.5 6.7E-05 1.4E-09 78.0 4.1 39 62-100 1-45 (463)
273 PRK05335 tRNA (uracil-5-)-meth 97.5 7.1E-05 1.5E-09 74.9 4.1 35 62-96 2-36 (436)
274 COG1232 HemY Protoporphyrinoge 97.5 6.7E-05 1.5E-09 75.8 3.8 36 63-98 1-38 (444)
275 PRK11259 solA N-methyltryptoph 97.5 7.5E-05 1.6E-09 75.3 4.2 59 283-342 148-211 (376)
276 TIGR00031 UDP-GALP_mutase UDP- 97.5 0.0001 2.2E-09 73.5 4.6 37 63-99 2-38 (377)
277 PRK08163 salicylate hydroxylas 97.5 0.00084 1.8E-08 68.2 11.3 50 287-336 112-167 (396)
278 TIGR01790 carotene-cycl lycope 97.5 0.0009 1.9E-08 67.8 11.3 89 233-335 2-141 (388)
279 PTZ00367 squalene epoxidase; P 97.5 0.00012 2.6E-09 77.2 4.8 35 61-95 32-66 (567)
280 PLN02927 antheraxanthin epoxid 97.5 0.00011 2.3E-09 78.3 4.3 36 60-95 79-114 (668)
281 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00011 2.4E-09 76.9 4.5 36 63-98 2-37 (492)
282 COG0665 DadA Glycine/D-amino a 97.4 0.00011 2.4E-09 74.3 4.3 59 284-343 156-220 (387)
283 PRK12810 gltD glutamate syntha 97.4 0.0003 6.5E-09 73.1 7.5 89 229-335 142-240 (471)
284 PRK07333 2-octaprenyl-6-methox 97.4 0.0011 2.3E-08 67.6 11.5 61 284-345 111-176 (403)
285 KOG2495 NADH-dehydrogenase (ub 97.4 9.2E-05 2E-09 72.3 3.3 100 61-184 217-331 (491)
286 COG0654 UbiH 2-polyprenyl-6-me 97.4 0.0011 2.3E-08 67.3 11.1 91 232-336 4-163 (387)
287 PF04820 Trp_halogenase: Trypt 97.4 0.00017 3.7E-09 74.3 5.2 31 64-94 1-34 (454)
288 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00014 3E-09 75.0 4.5 33 63-95 1-37 (437)
289 PRK12809 putative oxidoreducta 97.4 0.00032 7E-09 75.6 7.5 89 229-336 309-408 (639)
290 PRK05192 tRNA uridine 5-carbox 97.4 0.00096 2.1E-08 70.0 10.7 89 232-334 6-156 (618)
291 TIGR02734 crtI_fam phytoene de 97.4 0.00011 2.3E-09 77.3 3.8 51 284-334 219-275 (502)
292 PRK12266 glpD glycerol-3-phosp 97.4 0.00015 3.2E-09 76.1 4.7 36 61-96 5-40 (508)
293 PLN02697 lycopene epsilon cycl 97.4 0.0011 2.5E-08 69.2 11.1 92 231-336 109-249 (529)
294 PRK12814 putative NADPH-depend 97.4 0.00034 7.4E-09 75.6 7.4 90 229-336 192-291 (652)
295 PRK01438 murD UDP-N-acetylmura 97.4 0.00052 1.1E-08 71.7 8.6 74 231-336 17-91 (480)
296 TIGR02731 phytoene_desat phyto 97.4 0.00013 2.9E-09 75.5 4.2 36 64-99 1-36 (453)
297 COG2907 Predicted NAD/FAD-bind 97.4 0.00016 3.5E-09 68.8 4.1 39 61-100 7-45 (447)
298 PRK08294 phenol 2-monooxygenas 97.4 0.00026 5.6E-09 76.1 6.3 36 61-96 31-67 (634)
299 PRK07588 hypothetical protein; 97.4 0.0013 2.7E-08 66.8 11.1 40 297-336 115-159 (391)
300 PTZ00188 adrenodoxin reductase 97.4 0.00053 1.1E-08 69.9 8.1 88 230-336 39-139 (506)
301 PRK05714 2-octaprenyl-3-methyl 97.4 0.0012 2.5E-08 67.4 10.8 51 286-336 114-169 (405)
302 PRK07608 ubiquinone biosynthes 97.4 0.0017 3.7E-08 65.7 11.8 51 285-336 112-168 (388)
303 TIGR03329 Phn_aa_oxid putative 97.3 0.00022 4.7E-09 74.0 5.0 54 283-337 182-239 (460)
304 PRK13977 myosin-cross-reactive 97.3 0.00026 5.7E-09 73.4 5.5 40 61-100 21-64 (576)
305 PRK12769 putative oxidoreducta 97.3 0.00044 9.6E-09 74.9 7.4 90 228-336 325-425 (654)
306 COG1231 Monoamine oxidase [Ami 97.3 0.00026 5.6E-09 70.3 5.0 42 60-101 5-46 (450)
307 PRK13369 glycerol-3-phosphate 97.3 0.00021 4.5E-09 75.0 4.6 58 283-340 154-220 (502)
308 PRK05868 hypothetical protein; 97.3 0.0013 2.8E-08 66.2 10.1 41 296-336 116-161 (372)
309 KOG1298 Squalene monooxygenase 97.3 0.00081 1.8E-08 64.9 7.9 34 61-94 44-77 (509)
310 PLN02568 polyamine oxidase 97.3 0.00024 5.2E-09 74.7 4.9 39 62-100 5-48 (539)
311 PRK09126 hypothetical protein; 97.3 0.0022 4.9E-08 65.0 11.7 50 287-336 113-168 (392)
312 PRK06184 hypothetical protein; 97.3 0.0019 4.1E-08 67.8 11.5 51 286-336 111-169 (502)
313 PLN02529 lysine-specific histo 97.3 0.00027 5.8E-09 76.2 5.0 41 60-100 158-198 (738)
314 PRK08244 hypothetical protein; 97.3 0.0019 4.2E-08 67.7 11.4 52 285-336 101-160 (493)
315 PRK08274 tricarballylate dehyd 97.3 0.00025 5.4E-09 73.8 4.3 34 62-95 4-37 (466)
316 PRK00711 D-amino acid dehydrog 97.2 0.00024 5.1E-09 72.8 4.0 58 284-342 201-264 (416)
317 PLN02328 lysine-specific histo 97.2 0.00038 8.3E-09 75.5 5.6 40 60-99 236-275 (808)
318 PLN02676 polyamine oxidase 97.2 0.00031 6.7E-09 73.1 4.7 41 60-100 24-65 (487)
319 PRK06481 fumarate reductase fl 97.2 0.00031 6.8E-09 73.6 4.7 36 61-96 60-95 (506)
320 TIGR01988 Ubi-OHases Ubiquinon 97.2 0.0036 7.7E-08 63.3 12.0 52 285-336 107-164 (385)
321 TIGR02730 carot_isom carotene 97.2 0.0003 6.6E-09 73.6 4.3 51 284-334 229-285 (493)
322 KOG2614 Kynurenine 3-monooxyge 97.2 0.00033 7.2E-09 68.5 4.1 35 62-96 2-36 (420)
323 KOG0685 Flavin-containing amin 97.2 0.00031 6.8E-09 69.8 3.9 39 62-100 21-60 (498)
324 PF00890 FAD_binding_2: FAD bi 97.2 0.00025 5.4E-09 72.7 3.4 33 64-96 1-33 (417)
325 TIGR02732 zeta_caro_desat caro 97.2 0.00028 6.2E-09 73.3 3.9 35 64-98 1-35 (474)
326 PRK07190 hypothetical protein; 97.2 0.0027 5.8E-08 66.2 11.1 50 286-335 111-165 (487)
327 PRK08013 oxidoreductase; Provi 97.2 0.0038 8.3E-08 63.5 11.8 51 286-336 113-169 (400)
328 PF05834 Lycopene_cycl: Lycope 97.2 0.0025 5.3E-08 64.2 10.2 92 233-336 2-143 (374)
329 PRK07121 hypothetical protein; 97.2 0.00051 1.1E-08 71.9 5.5 35 62-96 20-54 (492)
330 PRK07045 putative monooxygenas 97.2 0.0033 7.2E-08 63.7 11.2 52 285-336 107-166 (388)
331 PRK07364 2-octaprenyl-6-methox 97.2 0.0038 8.2E-08 63.9 11.8 51 286-336 123-182 (415)
332 PRK10157 putative oxidoreducta 97.2 0.003 6.4E-08 64.9 10.9 51 285-335 109-164 (428)
333 PRK11101 glpA sn-glycerol-3-ph 97.2 0.00039 8.5E-09 73.5 4.5 86 256-343 123-219 (546)
334 PF01494 FAD_binding_3: FAD bi 97.2 0.0021 4.6E-08 63.9 9.6 52 285-336 112-173 (356)
335 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.0037 8E-08 63.4 11.5 52 285-336 113-170 (391)
336 PRK08850 2-octaprenyl-6-methox 97.1 0.0031 6.7E-08 64.3 10.9 49 288-336 115-169 (405)
337 PRK08641 sdhA succinate dehydr 97.1 0.00036 7.8E-09 74.4 4.0 57 348-407 354-411 (589)
338 TIGR00136 gidA glucose-inhibit 97.1 0.0033 7.2E-08 66.0 10.9 48 288-335 100-154 (617)
339 COG2072 TrkA Predicted flavopr 97.1 0.014 3E-07 60.1 15.3 127 231-373 9-185 (443)
340 PF00743 FMO-like: Flavin-bind 97.1 0.0025 5.5E-08 66.8 10.0 129 231-374 2-194 (531)
341 PRK07804 L-aspartate oxidase; 97.1 0.00055 1.2E-08 72.3 5.1 35 62-96 16-50 (541)
342 PRK06753 hypothetical protein; 97.1 0.0027 6E-08 63.9 10.0 39 298-336 110-153 (373)
343 PRK01747 mnmC bifunctional tRN 97.1 0.00039 8.5E-09 75.5 3.9 57 283-340 407-468 (662)
344 TIGR01813 flavo_cyto_c flavocy 97.1 0.00045 9.8E-09 71.3 4.2 34 64-97 1-35 (439)
345 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00043 9.3E-09 76.2 4.0 34 63-96 1-36 (765)
346 PRK06567 putative bifunctional 97.1 0.00096 2.1E-08 73.1 6.4 35 228-276 381-415 (1028)
347 KOG2311 NAD/FAD-utilizing prot 97.1 0.00075 1.6E-08 66.8 5.0 35 60-94 26-60 (679)
348 PRK13984 putative oxidoreducta 97.0 0.0013 2.9E-08 70.6 7.5 89 228-335 281-380 (604)
349 PLN02612 phytoene desaturase 97.0 0.0007 1.5E-08 71.9 5.2 50 284-333 308-364 (567)
350 PF13454 NAD_binding_9: FAD-NA 97.0 0.0059 1.3E-07 53.2 10.2 37 297-333 113-155 (156)
351 KOG2852 Possible oxidoreductas 97.0 0.0016 3.5E-08 60.6 6.6 34 61-94 9-48 (380)
352 PRK07494 2-octaprenyl-6-methox 97.0 0.0059 1.3E-07 61.8 11.6 50 286-336 113-168 (388)
353 PRK08849 2-octaprenyl-3-methyl 97.0 0.0036 7.8E-08 63.3 10.0 40 297-336 124-168 (384)
354 PLN02464 glycerol-3-phosphate 97.0 0.0006 1.3E-08 73.1 4.5 85 255-342 200-303 (627)
355 PF04820 Trp_halogenase: Trypt 97.0 0.0045 9.8E-08 63.9 10.7 51 286-336 156-212 (454)
356 COG1148 HdrA Heterodisulfide r 97.0 0.006 1.3E-07 60.9 10.7 72 227-312 121-207 (622)
357 PRK06475 salicylate hydroxylas 97.0 0.0058 1.3E-07 62.2 11.4 52 285-336 108-168 (400)
358 KOG2755 Oxidoreductase [Genera 97.0 0.0015 3.2E-08 59.9 5.9 91 232-336 1-105 (334)
359 PRK12771 putative glutamate sy 97.0 0.0015 3.2E-08 69.7 6.9 89 228-336 135-235 (564)
360 PRK01438 murD UDP-N-acetylmura 97.0 0.0011 2.4E-08 69.1 5.7 34 62-95 16-49 (480)
361 PLN00128 Succinate dehydrogena 97.0 0.00099 2.1E-08 71.5 5.3 34 62-95 50-83 (635)
362 PRK06996 hypothetical protein; 96.9 0.0087 1.9E-07 60.9 11.9 52 284-335 115-174 (398)
363 PRK06617 2-octaprenyl-6-methox 96.9 0.0067 1.5E-07 61.1 10.9 51 285-336 105-161 (374)
364 COG0562 Glf UDP-galactopyranos 96.9 0.00097 2.1E-08 63.0 4.3 38 62-99 1-38 (374)
365 PRK09078 sdhA succinate dehydr 96.9 0.00088 1.9E-08 71.6 4.6 34 62-95 12-45 (598)
366 KOG2415 Electron transfer flav 96.9 0.00066 1.4E-08 66.1 3.2 42 60-101 74-121 (621)
367 TIGR02023 BchP-ChlP geranylger 96.9 0.0058 1.3E-07 61.9 10.3 51 286-336 94-156 (388)
368 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.0016 3.6E-08 65.7 5.9 31 232-276 2-32 (433)
369 PRK11259 solA N-methyltryptoph 96.9 0.011 2.4E-07 59.6 12.0 31 232-276 5-35 (376)
370 PF00732 GMC_oxred_N: GMC oxid 96.9 0.00087 1.9E-08 65.2 3.9 36 63-98 1-37 (296)
371 PRK05257 malate:quinone oxidor 96.9 0.00092 2E-08 69.6 4.2 62 284-345 183-256 (494)
372 PRK06185 hypothetical protein; 96.9 0.011 2.4E-07 60.3 12.0 60 285-345 109-178 (407)
373 PRK05732 2-octaprenyl-6-methox 96.9 0.0089 1.9E-07 60.6 11.4 49 288-336 116-170 (395)
374 TIGR01984 UbiH 2-polyprenyl-6- 96.9 0.009 1.9E-07 60.3 11.4 52 285-336 106-163 (382)
375 TIGR01812 sdhA_frdA_Gneg succi 96.9 0.00078 1.7E-08 71.8 3.7 58 348-407 341-403 (566)
376 PRK06183 mhpA 3-(3-hydroxyphen 96.9 0.0086 1.9E-07 63.5 11.6 51 286-336 115-175 (538)
377 PRK12837 3-ketosteroid-delta-1 96.9 0.00081 1.8E-08 70.7 3.7 34 62-96 7-40 (513)
378 KOG3851 Sulfide:quinone oxidor 96.8 0.0006 1.3E-08 64.2 2.3 94 231-336 40-146 (446)
379 PRK09897 hypothetical protein; 96.8 0.0073 1.6E-07 63.2 10.6 42 295-336 118-167 (534)
380 PRK07057 sdhA succinate dehydr 96.8 0.00088 1.9E-08 71.6 3.8 34 62-95 12-45 (591)
381 PRK07395 L-aspartate oxidase; 96.8 0.0013 2.7E-08 69.7 5.0 35 61-96 8-42 (553)
382 PRK07803 sdhA succinate dehydr 96.8 0.00081 1.8E-08 72.3 3.5 35 62-96 8-42 (626)
383 PRK12834 putative FAD-binding 96.8 0.001 2.2E-08 70.6 4.1 34 62-95 4-37 (549)
384 PTZ00363 rab-GDP dissociation 96.8 0.0014 3.1E-08 67.0 4.9 53 284-336 232-291 (443)
385 TIGR01372 soxA sarcosine oxida 96.8 0.0072 1.6E-07 68.6 10.9 93 230-336 163-287 (985)
386 PRK06452 sdhA succinate dehydr 96.8 0.00098 2.1E-08 70.8 3.8 58 348-407 345-404 (566)
387 PRK10015 oxidoreductase; Provi 96.8 0.01 2.2E-07 61.0 11.1 51 285-335 109-164 (429)
388 PTZ00139 Succinate dehydrogena 96.8 0.00099 2.1E-08 71.4 3.8 35 62-96 29-63 (617)
389 PRK06854 adenylylsulfate reduc 96.8 0.001 2.2E-08 71.2 3.7 34 62-95 11-46 (608)
390 PRK07573 sdhA succinate dehydr 96.8 0.0013 2.9E-08 70.7 4.6 34 62-95 35-68 (640)
391 PF13434 K_oxygenase: L-lysine 96.8 0.0018 4E-08 64.0 5.2 38 60-97 188-227 (341)
392 PRK12835 3-ketosteroid-delta-1 96.8 0.0015 3.3E-08 69.5 5.0 36 62-97 11-46 (584)
393 PRK08958 sdhA succinate dehydr 96.7 0.0012 2.6E-08 70.4 3.9 34 62-95 7-40 (588)
394 COG0493 GltD NADPH-dependent g 96.7 0.0017 3.7E-08 66.4 4.9 88 230-336 123-221 (457)
395 TIGR02061 aprA adenosine phosp 96.7 0.0013 2.7E-08 70.2 4.0 32 64-95 1-36 (614)
396 TIGR03329 Phn_aa_oxid putative 96.7 0.013 2.9E-07 60.7 11.4 34 232-277 26-59 (460)
397 PLN03000 amine oxidase 96.7 0.0016 3.4E-08 71.0 4.4 40 61-100 183-222 (881)
398 KOG0404 Thioredoxin reductase 96.7 0.011 2.3E-07 53.2 8.8 105 232-336 10-125 (322)
399 KOG2404 Fumarate reductase, fl 96.7 0.0061 1.3E-07 57.6 7.7 33 64-96 11-43 (477)
400 PRK08071 L-aspartate oxidase; 96.7 0.0016 3.5E-08 68.3 4.3 34 62-96 3-36 (510)
401 PRK05945 sdhA succinate dehydr 96.7 0.0014 3.1E-08 69.8 3.9 35 62-96 3-39 (575)
402 PRK06175 L-aspartate oxidase; 96.7 0.0019 4.1E-08 66.3 4.6 55 348-406 330-387 (433)
403 PRK08626 fumarate reductase fl 96.6 0.0014 3.1E-08 70.6 3.8 35 62-96 5-39 (657)
404 PRK06069 sdhA succinate dehydr 96.6 0.0013 2.9E-08 70.1 3.5 34 62-95 5-41 (577)
405 KOG1399 Flavin-containing mono 96.6 0.028 6.1E-07 57.4 12.7 91 231-335 7-153 (448)
406 PRK08275 putative oxidoreducta 96.6 0.0015 3.2E-08 69.4 3.7 49 350-407 357-405 (554)
407 COG0445 GidA Flavin-dependent 96.6 0.0031 6.8E-08 64.0 5.7 46 288-333 104-156 (621)
408 TIGR01989 COQ6 Ubiquinone bios 96.6 0.018 3.9E-07 59.3 11.5 51 286-336 119-184 (437)
409 TIGR02028 ChlP geranylgeranyl 96.6 0.017 3.7E-07 58.7 11.1 51 286-336 95-161 (398)
410 PRK08243 4-hydroxybenzoate 3-m 96.6 0.021 4.5E-07 58.0 11.8 50 287-336 106-164 (392)
411 PRK12844 3-ketosteroid-delta-1 96.6 0.0019 4.1E-08 68.6 4.3 35 62-96 6-40 (557)
412 PRK08132 FAD-dependent oxidore 96.6 0.016 3.6E-07 61.5 11.4 51 286-336 127-186 (547)
413 COG1251 NirB NAD(P)H-nitrite r 96.6 0.0058 1.3E-07 64.2 7.6 94 232-336 5-114 (793)
414 PRK12839 hypothetical protein; 96.6 0.0026 5.6E-08 67.6 5.1 37 61-97 7-43 (572)
415 PRK06263 sdhA succinate dehydr 96.6 0.0018 3.9E-08 68.6 3.9 56 349-407 348-404 (543)
416 TIGR00551 nadB L-aspartate oxi 96.6 0.0019 4E-08 67.6 3.8 33 63-96 3-35 (488)
417 TIGR03219 salicylate_mono sali 96.6 0.016 3.4E-07 59.3 10.6 39 298-336 117-160 (414)
418 COG0578 GlpA Glycerol-3-phosph 96.6 0.0029 6.2E-08 65.2 5.0 39 61-99 11-49 (532)
419 COG3075 GlpB Anaerobic glycero 96.5 0.0033 7.2E-08 59.6 4.8 121 283-406 257-417 (421)
420 COG3634 AhpF Alkyl hydroperoxi 96.5 0.0047 1E-07 59.0 5.9 104 230-335 211-325 (520)
421 PRK12409 D-amino acid dehydrog 96.5 0.019 4E-07 58.7 10.9 55 288-342 201-265 (410)
422 PLN02815 L-aspartate oxidase 96.5 0.0026 5.6E-08 67.8 4.6 34 62-96 29-62 (594)
423 PLN00093 geranylgeranyl diphos 96.5 0.025 5.5E-07 58.3 11.8 51 286-336 134-200 (450)
424 COG1206 Gid NAD(FAD)-utilizing 96.5 0.003 6.6E-08 59.8 4.3 34 62-95 3-36 (439)
425 TIGR01811 sdhA_Bsu succinate d 96.5 0.0017 3.7E-08 69.5 3.0 55 349-406 370-425 (603)
426 PF12831 FAD_oxidored: FAD dep 96.5 0.0025 5.4E-08 65.4 4.1 98 233-346 2-159 (428)
427 PRK06134 putative FAD-binding 96.5 0.0038 8.3E-08 66.6 5.6 38 61-98 11-48 (581)
428 PRK12843 putative FAD-binding 96.5 0.004 8.6E-08 66.5 5.7 36 62-97 16-51 (578)
429 KOG1276 Protoporphyrinogen oxi 96.4 0.003 6.5E-08 62.1 4.1 39 61-99 10-50 (491)
430 PTZ00306 NADH-dependent fumara 96.4 0.0035 7.6E-08 72.2 5.3 38 60-97 407-444 (1167)
431 PF01946 Thi4: Thi4 family; PD 96.4 0.079 1.7E-06 47.9 12.6 91 232-336 19-166 (230)
432 KOG0399 Glutamate synthase [Am 96.4 0.011 2.5E-07 64.3 8.5 92 226-336 1781-1883(2142)
433 COG0644 FixC Dehydrogenases (f 96.4 0.028 6.1E-07 57.1 11.2 91 232-336 5-153 (396)
434 PRK12845 3-ketosteroid-delta-1 96.4 0.004 8.6E-08 66.0 5.0 39 61-100 15-53 (564)
435 PLN02976 amine oxidase 96.4 0.0034 7.3E-08 71.2 4.5 39 61-99 692-730 (1713)
436 TIGR02462 pyranose_ox pyranose 96.4 0.0031 6.6E-08 66.0 4.0 36 63-98 1-36 (544)
437 TIGR01176 fum_red_Fp fumarate 96.3 0.0026 5.6E-08 67.8 3.3 57 349-407 357-414 (580)
438 TIGR02360 pbenz_hydroxyl 4-hyd 96.3 0.032 6.9E-07 56.6 11.1 50 287-336 106-164 (390)
439 PRK09231 fumarate reductase fl 96.3 0.0028 6.2E-08 67.5 3.5 58 348-407 357-415 (582)
440 PRK02106 choline dehydrogenase 96.3 0.0043 9.4E-08 66.1 4.7 35 62-96 5-40 (560)
441 PRK01747 mnmC bifunctional tRN 96.3 0.026 5.7E-07 61.4 10.8 32 231-276 261-292 (662)
442 PRK13800 putative oxidoreducta 96.3 0.0034 7.3E-08 70.5 3.9 50 349-407 361-410 (897)
443 PRK11101 glpA sn-glycerol-3-ph 96.3 0.027 5.9E-07 59.7 10.4 32 232-277 8-39 (546)
444 COG1004 Ugd Predicted UDP-gluc 96.2 0.039 8.4E-07 54.2 10.4 33 63-95 1-33 (414)
445 PRK08205 sdhA succinate dehydr 96.2 0.0036 7.8E-08 66.9 3.8 33 62-95 5-37 (583)
446 PRK09077 L-aspartate oxidase; 96.2 0.0048 1E-07 65.3 4.6 56 349-406 353-409 (536)
447 COG1053 SdhA Succinate dehydro 96.2 0.004 8.8E-08 65.5 3.9 36 61-96 5-40 (562)
448 KOG2852 Possible oxidoreductas 96.2 0.021 4.6E-07 53.3 7.8 47 295-341 159-214 (380)
449 PF06039 Mqo: Malate:quinone o 96.1 0.21 4.6E-06 50.4 15.2 76 285-360 182-271 (488)
450 PRK07538 hypothetical protein; 96.1 0.041 8.9E-07 56.2 10.9 50 287-336 105-166 (413)
451 PRK06126 hypothetical protein; 96.1 0.039 8.4E-07 58.7 10.9 51 286-336 128-189 (545)
452 PRK07512 L-aspartate oxidase; 96.1 0.0065 1.4E-07 63.9 4.8 57 349-407 341-398 (513)
453 KOG2844 Dimethylglycine dehydr 96.1 0.026 5.7E-07 58.6 8.7 80 256-338 159-246 (856)
454 KOG2311 NAD/FAD-utilizing prot 96.1 0.014 3.1E-07 58.2 6.5 22 232-253 30-51 (679)
455 PF13241 NAD_binding_7: Putati 96.0 0.0083 1.8E-07 48.2 3.7 35 61-95 6-40 (103)
456 PRK12266 glpD glycerol-3-phosp 95.8 0.052 1.1E-06 57.0 10.2 52 289-340 160-221 (508)
457 PLN02985 squalene monooxygenas 95.8 0.071 1.5E-06 56.0 11.1 52 285-336 148-209 (514)
458 COG4529 Uncharacterized protei 95.8 0.071 1.5E-06 53.8 10.3 21 232-252 3-23 (474)
459 TIGR01810 betA choline dehydro 95.8 0.0091 2E-07 63.2 4.3 33 64-96 1-34 (532)
460 COG3573 Predicted oxidoreducta 95.8 0.013 2.7E-07 55.9 4.6 34 62-95 5-38 (552)
461 PRK11445 putative oxidoreducta 95.7 0.11 2.4E-06 51.8 11.7 42 295-336 109-158 (351)
462 PLN02927 antheraxanthin epoxid 95.7 0.067 1.5E-06 57.4 10.1 25 229-253 80-104 (668)
463 PRK08255 salicylyl-CoA 5-hydro 95.7 0.032 7E-07 61.6 8.1 33 232-276 2-34 (765)
464 TIGR01470 cysG_Nterm siroheme 95.6 0.016 3.6E-07 52.8 4.6 35 61-95 8-42 (205)
465 COG2303 BetA Choline dehydroge 95.5 0.017 3.7E-07 61.0 5.0 37 60-96 5-41 (542)
466 PRK06719 precorrin-2 dehydroge 95.5 0.019 4.1E-07 50.0 4.4 35 60-94 11-45 (157)
467 PRK06481 fumarate reductase fl 95.5 0.11 2.4E-06 54.6 11.0 52 285-336 191-253 (506)
468 COG0665 DadA Glycine/D-amino a 95.5 0.11 2.4E-06 52.4 10.7 33 231-277 5-37 (387)
469 PLN02785 Protein HOTHEAD 95.5 0.017 3.7E-07 61.5 4.9 35 61-96 54-88 (587)
470 KOG1346 Programmed cell death 95.4 0.018 3.8E-07 56.4 4.1 48 295-342 268-320 (659)
471 KOG2960 Protein involved in th 95.4 0.0068 1.5E-07 53.8 1.2 38 62-99 76-115 (328)
472 PF01210 NAD_Gly3P_dh_N: NAD-d 95.3 0.015 3.3E-07 50.7 3.3 32 64-95 1-32 (157)
473 PRK08294 phenol 2-monooxygenas 95.2 0.12 2.6E-06 55.8 10.5 51 286-336 143-211 (634)
474 TIGR02485 CobZ_N-term precorri 95.2 0.011 2.4E-07 60.8 2.4 30 67-96 1-30 (432)
475 TIGR01470 cysG_Nterm siroheme 95.1 0.032 6.9E-07 50.9 4.8 74 230-336 9-83 (205)
476 PRK08401 L-aspartate oxidase; 95.1 0.24 5.1E-06 51.5 11.8 51 285-336 121-176 (466)
477 KOG2665 Predicted FAD-dependen 95.0 0.017 3.7E-07 54.6 2.9 61 288-348 200-270 (453)
478 PRK06718 precorrin-2 dehydroge 94.9 0.031 6.8E-07 50.8 4.3 34 61-94 9-42 (202)
479 COG0569 TrkA K+ transport syst 94.9 0.025 5.4E-07 52.4 3.5 34 63-96 1-34 (225)
480 COG0578 GlpA Glycerol-3-phosph 94.8 0.094 2E-06 54.3 7.8 33 232-278 14-46 (532)
481 PRK14106 murD UDP-N-acetylmura 94.7 0.1 2.2E-06 54.0 8.1 76 231-336 6-81 (450)
482 PF03721 UDPG_MGDP_dh_N: UDP-g 94.7 0.023 4.9E-07 50.9 2.8 34 63-96 1-34 (185)
483 PF13450 NAD_binding_8: NAD(P) 94.7 0.052 1.1E-06 39.7 4.2 29 235-277 1-29 (68)
484 KOG4254 Phytoene desaturase [C 94.7 0.028 6.1E-07 55.8 3.4 50 284-333 264-319 (561)
485 PRK02705 murD UDP-N-acetylmura 94.6 0.032 7E-07 57.9 4.0 33 64-96 2-34 (459)
486 PF02737 3HCDH_N: 3-hydroxyacy 94.4 0.039 8.5E-07 49.2 3.5 33 64-96 1-33 (180)
487 KOG4716 Thioredoxin reductase 94.3 0.026 5.6E-07 53.9 2.1 101 62-184 198-302 (503)
488 COG3486 IucD Lysine/ornithine 94.2 0.21 4.6E-06 49.3 8.2 119 63-185 188-343 (436)
489 KOG2614 Kynurenine 3-monooxyge 94.2 0.18 3.8E-06 49.9 7.7 31 232-276 4-34 (420)
490 PRK06718 precorrin-2 dehydroge 94.2 0.1 2.2E-06 47.5 5.8 73 230-335 10-82 (202)
491 PRK14106 murD UDP-N-acetylmura 94.1 0.052 1.1E-06 56.2 4.3 35 61-95 4-38 (450)
492 KOG0405 Pyridine nucleotide-di 94.0 0.22 4.8E-06 48.0 7.7 109 232-354 22-185 (478)
493 PF01262 AlaDh_PNT_C: Alanine 94.0 0.055 1.2E-06 47.7 3.6 35 61-95 19-53 (168)
494 PF02558 ApbA: Ketopantoate re 94.0 0.16 3.5E-06 43.7 6.5 73 233-331 1-75 (151)
495 PF01488 Shikimate_DH: Shikima 93.9 0.064 1.4E-06 45.3 3.7 35 61-95 11-46 (135)
496 PRK05335 tRNA (uracil-5-)-meth 93.8 0.06 1.3E-06 54.3 3.7 42 356-407 323-364 (436)
497 PRK05562 precorrin-2 dehydroge 93.5 0.12 2.5E-06 47.6 4.8 73 230-335 25-97 (223)
498 COG0686 Ald Alanine dehydrogen 93.4 0.063 1.4E-06 50.8 2.9 33 62-94 168-200 (371)
499 KOG3855 Monooxygenase involved 93.4 0.099 2.1E-06 51.5 4.3 35 60-94 34-72 (481)
500 PRK05562 precorrin-2 dehydroge 93.3 0.089 1.9E-06 48.3 3.8 36 60-95 23-58 (223)
No 1
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=100.00 E-value=6.1e-76 Score=555.05 Aligned_cols=427 Identities=52% Similarity=0.863 Sum_probs=384.3
Q ss_pred CCCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010844 58 KANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 58 ~~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
...++++|||+|+|++|.++++.|....++|+||+++++|.|+|+++.++.|.++.+.+.+|++.+... ...++.+++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~--k~~~~~y~e 128 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARK--KNGEVKYLE 128 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhc--cCCCceEEe
Confidence 446789999999999999999999999999999999999999999999999999999999999998542 223778999
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++++.||++++.|+++...+++ ..++..+.|||||+|+|+.++.++|||+.+++++++..+|+++++.++.++++.+
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~---~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a 205 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADS---SDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKA 205 (491)
T ss_pred cccEeecccccEEEEeeeccCC---CcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999999999998755442 1455789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHh
Q 010844 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (499)
+.|+..+++|++..+++||||||+|+|+|+||+++..+++++.||+++.+.+||++++. .+|+.|+.++.+++++.+.+
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~ 285 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR 285 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999997 59999999999999999999
Q ss_pred CCCEEEeC-ceEEEeCCeEEECCC----cEEeeeEEEEcCCCCcchhcccCCCCCCCCC--ceeeCCCCCCCCCCCeEEe
Q 010844 297 SGVRLVRG-IVKDVDSQKLILNDG----TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGG--RIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~v~~~~g----~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G--~i~vd~~l~~~~~~~Ifa~ 369 (499)
.||++.++ .|..++++.+..+.+ ++||+.+++|+||..|.++.+.+...+++.| .+.||++||+++.+||||+
T Consensus 286 ~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAi 365 (491)
T KOG2495|consen 286 DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAI 365 (491)
T ss_pred ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEe
Confidence 99999999 899999998887655 6899999999999999999888877777777 7999999999999999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCC-CCCCcC-----cCCCCCCceecccceEEEecCCceeE
Q 010844 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGG-RANSAK-----DMELGDPFVYRHLGSMATIGRYKALV 443 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~g~~~~lG~~~av~ 443 (499)
|||+.. ...++++|+|.|||.++|++++.+.+...+ +..+.. .... +||.|+++|++++||+.+|++
T Consensus 366 GDca~~------~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~~e~~~~r~~~~~~~~f-~PF~Y~H~GalA~lG~ekaiA 438 (491)
T KOG2495|consen 366 GDCADQ------RGLKPTAQVAEQQGAYLAKNFNKMGKGGNLPEGPSARLRGEGRHQF-KPFKYKHLGALAYLGREKAIA 438 (491)
T ss_pred cccccc------ccCccHHHHHHHHHHHHHHHHHHHhcccCCCccchhhhhhhhhhcc-CCcccccccceeeccccchhh
Confidence 999943 335779999999999999999998764332 111101 1122 899999999999999999999
Q ss_pred eccccccCCCeEEecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCCCCC
Q 010844 444 DLRQNKESKGLSLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 499 (499)
Q Consensus 444 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 499 (499)
+++.. ..+...|..+|++|+++|+.+..+||+|+.|+.||+..++||||++++
T Consensus 439 dl~~g---~~~~~~G~~s~~lWrS~Yls~~~S~R~R~lV~~dW~~~~~fGRd~s~i 491 (491)
T KOG2495|consen 439 DLPVG---KMWVSAGGSSFWLWRSAYLSKLVSWRNRFLVAIDWEKTFFFGRDSSSI 491 (491)
T ss_pred cCccC---CeeeeccchhhHHHHHHHHHHhhhhhhheeeeeheeeeEEeccccccC
Confidence 99741 228999999999999999999999999999999999999999999874
No 2
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=2.1e-73 Score=555.60 Aligned_cols=397 Identities=37% Similarity=0.621 Sum_probs=361.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
.+++|||||||++|+.+|..|.+.. ++|||||++++|.|+|+++++++|.++..++..+++.+ +....+++|+++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~---~~~~~~v~~~~~ 78 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRAL---LRKSGNVQFVQG 78 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHH---hcccCceEEEEE
Confidence 3579999999999999999998864 89999999999999999999999999999999999998 444457999999
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010844 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
+|++||+++++|++.+ ..++.||+||+|+|+.++++++||+.|+++.+++++|+.++++++...|+.++
T Consensus 79 ~V~~ID~~~k~V~~~~-----------~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~ 147 (405)
T COG1252 79 EVTDIDRDAKKVTLAD-----------LGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKAS 147 (405)
T ss_pred EEEEEcccCCEEEeCC-----------CccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987 24899999999999999999999999999999999999999999998888887
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhC
Q 010844 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (499)
.+..+ ++..+|+|||||++|||+|++|+++....+.. |...+.+.+|+||+++ ++||.+++++++++++.|+++
T Consensus 148 ~~~~~----~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~-~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 148 QEEDD----RALLTIVIVGGGPTGVELAGELAERLHRLLKK-FRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL 222 (405)
T ss_pred ccccc----cceeEEEEECCChhHHHHHHHHHHHHHHHhhh-hcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC
Confidence 54321 34568999999999999999999998665555 4333337899999997 799999999999999999999
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcE-EeeeEEEEcCCCCcchhcccC-CCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTE-VPYGLLVWSTGVGPSTLVKSL-DLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
||+++++ .|+++++++|++++|++ |++|++|||+|.+++++++++ +++.|+.|++.||++||++++|||||+|||+.
T Consensus 223 GV~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 223 GVEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred CCEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 9999999 89999999999999984 999999999999999999994 88889999999999999999999999999999
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceEEEecCCceeEeccccccCCCe
Q 010844 375 YLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGL 454 (499)
Q Consensus 375 ~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~~~~ 454 (499)
++++ .+.|+++|.|+|||+++|+||.+.++ |+ ++ +||.|.++|++++||.+.||+.+ +++
T Consensus 303 ~~~~---~p~P~tAQ~A~Qqg~~~a~ni~~~l~---g~-------~l-~~f~y~~~Gtl~~lG~~~av~~~------g~~ 362 (405)
T COG1252 303 VIDP---RPVPPTAQAAHQQGEYAAKNIKARLK---GK-------PL-KPFKYKDKGTLASLGDFSAVADL------GGV 362 (405)
T ss_pred CCCC---CCCCChhHHHHHHHHHHHHHHHHHhc---CC-------CC-CCCcccceEEEEEccCCceeEEe------cce
Confidence 8764 57899999999999999999999987 32 44 99999999999999999999998 569
Q ss_pred EEecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCC
Q 010844 455 SLAGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDI 496 (499)
Q Consensus 455 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 496 (499)
.+.|+++|++|+.+|+++++.++++..+..+|+..++++++.
T Consensus 363 ~l~G~~a~~~k~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~~ 404 (405)
T COG1252 363 KLKGFLAWLLKRAAYLYYLLGIRSRLAVALYWLTTYLTGRRS 404 (405)
T ss_pred eeccHHHHHHHHHHHHheecccCcHHHHHHHHhhhhhccccc
Confidence 999999999999999999999999999999999999998764
No 3
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=1.5e-66 Score=529.92 Aligned_cols=416 Identities=47% Similarity=0.817 Sum_probs=364.0
Q ss_pred CCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010844 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 59 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++++|||||||+||+.+|+.|.+.+++|||||+++++.|.|+++++..|..+.+++..+++... ...+++|+.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~----~~~~~~~i~~ 82 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPAL----AKLPNRYLRA 82 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHh----ccCCeEEEEE
Confidence 356789999999999999999998878999999999999999999999999888887777776652 2256899999
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010844 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
+|++||++++.|.+.....+ ......+.+++||+||||||+.+..+++||..++++.+++++++.++++.+.++++.+.
T Consensus 83 ~V~~Id~~~~~v~~~~~~~~-~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~ 161 (424)
T PTZ00318 83 VVYDVDFEEKRVKCGVVSKS-NNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERAS 161 (424)
T ss_pred EEEEEEcCCCEEEEeccccc-ccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999988421100 00001124799999999999999999999998889999999999999999888777766
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhC
Q 010844 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKS 297 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~ 297 (499)
.+..+.++.++.++|+|||||++|+|+|.+|+++......+.|+.++++.+|++++++ ++++.+++.+.+.+++.|+++
T Consensus 162 ~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~ 241 (424)
T PTZ00318 162 LPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRL 241 (424)
T ss_pred CCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHC
Confidence 6555555566667999999999999999999998766667777877778999999987 788999999999999999999
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYL 376 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~ 376 (499)
||+++++ +|.+++++.++++||+++++|++||++|.+|+++++.++++++++|+|.||++||++++|||||+|||+.++
T Consensus 242 gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~ 321 (424)
T PTZ00318 242 GVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANE 321 (424)
T ss_pred CCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCC
Confidence 9999998 899999999999999999999999999999999888899988889999999999977999999999999863
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceEEEecCCceeEeccccccCCCeEE
Q 010844 377 ESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSMATIGRYKALVDLRQNKESKGLSL 456 (499)
Q Consensus 377 ~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lG~~~av~~~~~~~~~~~~~~ 456 (499)
. .+.|++++.|++||+++|+||...+. |+ +..+||.+...|.+++||.++|++++ +++.+
T Consensus 322 ~----~~~~~~~~~A~~qg~~~A~ni~~~l~---g~-------~~~~~~~~~~~g~~~~lG~~~av~~~------~~~~~ 381 (424)
T PTZ00318 322 E----RPLPTLAQVASQQGVYLAKEFNNELK---GK-------PMSKPFVYRSLGSLAYLGNYSAIVQL------GAFDL 381 (424)
T ss_pred C----CCCCCchHHHHHHHHHHHHHHHHHhc---CC-------CCCCCCeecCCceEEEecCCceEEEc------CCceE
Confidence 2 34688999999999999999999886 22 11389999999999999999999987 56899
Q ss_pred ecHHHHHHHHHHHHHhccCcchhHHhHHHHHHHhhcCCCCCCC
Q 010844 457 AGFLSWLVWRSAYLTRVVSWRNRFYVAVNWATTFVFGRDISRI 499 (499)
Q Consensus 457 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 499 (499)
.|+++|++|+.+|+.++++|+++++++++|++++||+|++.|+
T Consensus 382 ~g~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 424 (424)
T PTZ00318 382 SGFKALLFWRSAYLTILGSWRSKLYVLVNWAGTAIFGRDITRF 424 (424)
T ss_pred ecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCccccC
Confidence 9999999999999999999999999999999999999999874
No 4
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=2.5e-50 Score=404.44 Aligned_cols=358 Identities=23% Similarity=0.343 Sum_probs=298.2
Q ss_pred cEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010844 64 RVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
+|||||||+||+.+|..|++ .+++|+|||+++++.|.+.++.+..|....+++..++.++. ...+++|+.++|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~gv~~~~~~v 76 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLA----RQAGARFVIAEA 76 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHH----HhcCCEEEEEEE
Confidence 59999999999999999964 36899999999999999988888888777666666666542 235789999999
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (499)
+.||++++.|.+.+ + .++.||+||||||+.+..|.+||..++++.+++++++...++.+.+.++..
T Consensus 77 ~~id~~~~~V~~~~---g--------~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (364)
T TIGR03169 77 TGIDPDRRKVLLAN---R--------PPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP--- 142 (364)
T ss_pred EEEecccCEEEECC---C--------CcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcC---
Confidence 99999999888765 2 379999999999999999999998788888999999888776665433211
Q ss_pred CCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCE
Q 010844 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVR 300 (499)
Q Consensus 221 ~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~ 300 (499)
...++|+|||+|++|+|+|.+|.+...+ .....+|+++...++++.+++.+.+.+.+.|++.||+
T Consensus 143 -------~~~~~vvVvG~G~~g~E~A~~l~~~~~~--------~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~ 207 (364)
T TIGR03169 143 -------PGTKRLAVVGGGAAGVEIALALRRRLPK--------RGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIE 207 (364)
T ss_pred -------CCCceEEEECCCHHHHHHHHHHHHHHHh--------cCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCE
Confidence 1235899999999999999999875421 0112589999555788888999999999999999999
Q ss_pred EEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCC
Q 010844 301 LVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST 379 (499)
Q Consensus 301 v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~ 379 (499)
++.+ ++.+++++.+.+++|+++++|.+|+|+|.+|++++...+++.+++|+|.||+++|+.++|||||+|||+.++.
T Consensus 208 v~~~~~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~-- 285 (364)
T TIGR03169 208 VHEGAPVTRGPDGALILADGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD-- 285 (364)
T ss_pred EEeCCeeEEEcCCeEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCC--
Confidence 9999 8999988889999999999999999999999988888888888889999999999889999999999997643
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCcee-cccceEEEecCCceeEeccccccCCCeEEec
Q 010844 380 GKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVY-RHLGSMATIGRYKALVDLRQNKESKGLSLAG 458 (499)
Q Consensus 380 g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~lG~~~av~~~~~~~~~~~~~~~g 458 (499)
.+.|++++.|++||+++|+||.+.+. |+ ++ ++|.+ ...++++++|.+.||++. +++.+.|
T Consensus 286 --~~~~~~~~~A~~~g~~~a~ni~~~l~---g~-------~~-~~~~~~~~~~~~~~~G~~~~v~~~------~~~~~~~ 346 (364)
T TIGR03169 286 --APRPKAGVYAVRQAPILAANLRASLR---GQ-------PL-RPFRPQRDYLQLLNTGDRRAVASW------GWIIGPG 346 (364)
T ss_pred --CCCCCchHHHHHhHHHHHHHHHHHhc---CC-------CC-CCCcccccceeEEEcCCCcEEEee------cceeecC
Confidence 34578899999999999999998875 22 22 66764 466899999999999875 4789999
Q ss_pred HHHHHHHHHHHHHhccC
Q 010844 459 FLSWLVWRSAYLTRVVS 475 (499)
Q Consensus 459 ~~~~~~~~~~~~~~~~~ 475 (499)
+++|+++..+..++|.+
T Consensus 347 ~~~~~~k~~~~~~~~~~ 363 (364)
T TIGR03169 347 RWLWRLKDWIDRRFMRR 363 (364)
T ss_pred ccHHHHHHHHhHHHHhc
Confidence 99999998777766654
No 5
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=6.1e-42 Score=350.47 Aligned_cols=302 Identities=19% Similarity=0.266 Sum_probs=241.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccccc-chhhhhccCCCCCccccchhhhccccccCCCeEEE-E
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-L 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (499)
|++|||||||+||++||..|++. +++|+|||+++++.|.+ .++.+..+.....+...++.. ..+....++.+. .
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~--~~~~~~~~i~v~~~ 78 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTP--EKFYDRKQITVKTY 78 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCH--HHHHHhCCCEEEeC
Confidence 35899999999999999999875 68999999999998885 455555554433211111110 112233567765 4
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++|++||++++.|.+.+..++ +..++.||+||||||+.|+.|++++ ++++.++++.++..+++.+..
T Consensus 79 ~~V~~Id~~~~~v~~~~~~~~------~~~~~~yd~lviAtGs~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~----- 145 (438)
T PRK13512 79 HEVIAINDERQTVTVLNRKTN------EQFEESYDKLILSPGASANSLGFES--DITFTLRNLEDTDAIDQFIKA----- 145 (438)
T ss_pred CEEEEEECCCCEEEEEECCCC------cEEeeecCEEEECCCCCCCCCCCCC--CCeEEecCHHHHHHHHHHHhh-----
Confidence 799999999999998763221 1246799999999999998777653 566778888888887766531
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHh
Q 010844 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~ 296 (499)
...++++|||||++|+|+|..|.+++ .+|+++++. ++++.+++++.+.+.+.|++
T Consensus 146 ----------~~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~ 201 (438)
T PRK13512 146 ----------NQVDKALVVGAGYISLEVLENLYERG--------------LHPTLIHRSDKINKLMDADMNQPILDELDK 201 (438)
T ss_pred ----------cCCCEEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecccccchhcCHHHHHHHHHHHHh
Confidence 12259999999999999999998877 899999987 68888999999999999999
Q ss_pred CCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010844 297 SGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
.||+++++ +|.+++.+.+++++|+++++|.|+||+|++|+ +++++.+++++++|+|.||+++|| ++|||||+|||+.
T Consensus 202 ~gI~i~~~~~v~~i~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~ 280 (438)
T PRK13512 202 REIPYRLNEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFET-NVPNIYAIGDIIT 280 (438)
T ss_pred cCCEEEECCeEEEEeCCEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCccc-CCCCEEEeeeeEE
Confidence 99999998 89999988899988999999999999999998 588888898888899999999998 8999999999996
Q ss_pred ccc-CCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 375 YLE-STGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 375 ~~~-~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
... ..+.+..+++++.|.+||+++|+||.
T Consensus 281 ~~~~~~~~~~~~~la~~A~~~a~~~a~ni~ 310 (438)
T PRK13512 281 SHYRHVDLPASVPLAWGAHRAASIVAEQIA 310 (438)
T ss_pred eeeccCCCceecccchHHHHHHHHHHHHhc
Confidence 432 12222346788899999999999985
No 6
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=5.2e-41 Score=339.85 Aligned_cols=317 Identities=19% Similarity=0.263 Sum_probs=243.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCcccc-cch-hhhhccCCCCCccccchhhhccccccCCCeEEE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFT-PLL-ASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~-~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
++++|||||||+||++||..|++.++ +|+||++++++.|. |.+ ..+..+.........+.. .....++.++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~ 76 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPAN-----WWQENNVHLH 76 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHH-----HHHHCCCEEE
Confidence 34689999999999999999998775 79999999988875 434 333333221111111111 1123578887
Q ss_pred EE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCc-cccCccCCCHHHHHHHHHHHHHHH
Q 010844 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGV-KENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~-~~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+ .|+.+|.+++.+.+.+ + .++.||+||||||+.|+.+++++. .++++.+++.+++.+++..+.
T Consensus 77 ~g~~V~~id~~~~~v~~~~---g--------~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--- 142 (396)
T PRK09754 77 SGVTIKTLGRDTRELVLTN---G--------ESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQ--- 142 (396)
T ss_pred cCCEEEEEECCCCEEEECC---C--------CEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh---
Confidence 66 7999999999888764 2 379999999999999987777664 356788888999988876542
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHH
Q 010844 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~ 292 (499)
..++++|||+|++|+|+|..|.+.+ .+||++++. .+++ .+++.+.+.+.+
T Consensus 143 --------------~~~~vvViGgG~ig~E~A~~l~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 194 (396)
T PRK09754 143 --------------PERSVVIVGAGTIGLELAASATQRR--------------CKVTVIELAATVMGRNAPPPVQRYLLQ 194 (396)
T ss_pred --------------cCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCcchhhhcCHHHHHHHHH
Confidence 2358999999999999999998876 899999986 5666 468888899999
Q ss_pred HHHhCCCEEEeC-ceEEEeCC---eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010844 293 QLSKSGVRLVRG-IVKDVDSQ---KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~---~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
.+++.||+++++ +|++++.+ .+.+.+|+++++|.||+++|.+|+. +++.++++.+ +.|.||+++|| +.||||
T Consensus 195 ~l~~~GV~i~~~~~V~~i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~--~gi~vd~~~~t-s~~~Iy 271 (396)
T PRK09754 195 RHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDTA--NGIVIDEACRT-CDPAIF 271 (396)
T ss_pred HHHHCCCEEEeCCeeEEEEcCCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCcC--CCEEECCCCcc-CCCCEE
Confidence 999999999998 89888753 3567889999999999999999995 6677777653 56999999999 999999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccc--eEEEecC
Q 010844 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLG--SMATIGR 438 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~lG~ 438 (499)
|+|||+.++++.|....+++++.|.+||+++|+||.... .+++. .||.+.+.. .+.++|.
T Consensus 272 A~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~----------~~~~~-~p~~~~~~~~~~~~~~G~ 333 (396)
T PRK09754 272 AGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP----------LPLLP-PPWFWSDQYSDNLQFIGD 333 (396)
T ss_pred EccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC----------CCCCC-CCceEEEeCCccEEEeeC
Confidence 999999876554443446789999999999999986321 12232 566666543 4566764
No 7
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.1e-39 Score=332.66 Aligned_cols=302 Identities=21% Similarity=0.327 Sum_probs=233.9
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcccccc-hhhhhccCCCC-CccccchhhhccccccCCCeEEE-E
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVFTPL-LASTCVGTLEF-RSVAEPIARIQPAISREPGSYFF-L 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 137 (499)
++|||||||+||+++|..|++.+ ++|+|||+++++.|.+. ++....+.... .+......+ .+.+ .+++++ .
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~gv~~~~~ 76 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPE---EFIK-SGIDVKTE 76 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHH---HHHH-CCCeEEec
Confidence 37999999999999999998864 68999999999887753 33333332111 111111111 1222 467765 5
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
++|+.||++++.|.+.+..++ ...++.||+||||||++|..|++||++ +++++++++.++.++++.+.+
T Consensus 77 ~~V~~id~~~~~v~~~~~~~~------~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~---- 146 (444)
T PRK09564 77 HEVVKVDAKNKTITVKNLKTG------SIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKD---- 146 (444)
T ss_pred CEEEEEECCCCEEEEEECCCC------CEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh----
Confidence 699999999999988753222 112344999999999999999999985 567778888888877766521
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHH
Q 010844 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l 294 (499)
...++|+|||||++|+|+|..+.+.+ .+|+++++. ++++ .+++++.+.+.+.+
T Consensus 147 -----------~~~~~vvVvGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~~~~~~~~l~~~l 201 (444)
T PRK09564 147 -----------EEIKNIVIIGAGFIGLEAVEAAKHLG--------------KNVRIIQLEDRILPDSFDKEITDVMEEEL 201 (444)
T ss_pred -----------cCCCEEEEECCCHHHHHHHHHHHhcC--------------CcEEEEeCCcccCchhcCHHHHHHHHHHH
Confidence 12359999999999999999998776 789999986 5776 58999999999999
Q ss_pred HhCCCEEEeC-ceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEe
Q 010844 295 SKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~ 369 (499)
++.||+++.+ +|.+++++. ....++.++++|.+|+|+|..|+ +++++++++.+++|+|.||+++|| ++|||||+
T Consensus 202 ~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~ 280 (444)
T PRK09564 202 RENGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAA 280 (444)
T ss_pred HHCCCEEEcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEe
Confidence 9999999998 899987542 22235568999999999999998 688888998888899999999998 99999999
Q ss_pred ccccccccCC-CCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 370 GDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 370 GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|||+..+... +....+++++.|.+||+++|+||..
T Consensus 281 GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 281 GDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAG 316 (444)
T ss_pred eeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcC
Confidence 9999865432 2234578999999999999999863
No 8
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.4e-39 Score=350.31 Aligned_cols=290 Identities=21% Similarity=0.359 Sum_probs=236.4
Q ss_pred CCcEEEECCchHHHHHHHhccC----CCCeEEEEcCCCCcccccc-hhhhhccCCCCCccccchhhhccccccCCCeEEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMVFTPL-LASTCVGTLEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
+++|||||||+||+.+|..|++ .+++||||++++++.|.+. ++.+..+. ..+++...... +....+++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~-~~~~l~~~~~~----~~~~~gI~~~ 77 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHH-TAEELSLVREG----FYEKHGIKVL 77 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCC-CHHHccCCCHH----HHHhCCCEEE
Confidence 3589999999999999999965 3589999999999988864 44444332 22333222222 2233678888
Q ss_pred EE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHH
Q 010844 137 LS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 137 ~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+ +|+.||++.+.|.+.+ + ..+.||+||||||+.|..|++||.+. .++.+++++++.+++..+
T Consensus 78 ~g~~V~~Id~~~~~V~~~~---G--------~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~---- 142 (847)
T PRK14989 78 VGERAITINRQEKVIHSSA---G--------RTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACA---- 142 (847)
T ss_pred cCCEEEEEeCCCcEEEECC---C--------cEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHH----
Confidence 76 6999999988887654 2 37999999999999999999999863 567788999998887654
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHH
Q 010844 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATT 292 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~ 292 (499)
...++++|||||++|+|+|..|.+++ .+|+++++. .+++ .+++...+.+.+
T Consensus 143 -------------~~~k~vvVIGgG~iGlE~A~~L~~~G--------------~~VtvVe~~~~ll~~~ld~~~~~~l~~ 195 (847)
T PRK14989 143 -------------RRSKRGAVVGGGLLGLEAAGALKNLG--------------VETHVIEFAPMLMAEQLDQMGGEQLRR 195 (847)
T ss_pred -------------hcCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEeccccchhhhcCHHHHHHHHH
Confidence 12358999999999999999999887 899999987 5676 589999999999
Q ss_pred HHHhCCCEEEeC-ceEEEeCC------eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCC
Q 010844 293 QLSKSGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~------~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~ 364 (499)
.|+++||+++++ .++++.++ .+.++||+++++|+||+|+|.+|+. +++.++++++++|+|.||++||| +.|
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~T-s~p 274 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQT-SDP 274 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcC-CCC
Confidence 999999999999 88888642 4678899999999999999999995 77788999999999999999999 899
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
||||+|||+...+ ....++..|.+||+.+|.||..
T Consensus 275 ~IYAiGD~a~~~~-----~~~gl~~~a~~~a~vaa~~i~g 309 (847)
T PRK14989 275 DIYAIGECASWNN-----RVFGLVAPGYKMAQVAVDHLLG 309 (847)
T ss_pred CEEEeecceeEcC-----cccccHHHHHHHHHHHHHHhcC
Confidence 9999999997532 1234678899999999999853
No 9
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=9.5e-39 Score=321.59 Aligned_cols=286 Identities=23% Similarity=0.349 Sum_probs=228.7
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccc-ccchhhhhccCCCCCcccc-chhhhccccccCCCeEEEE-
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF-TPLLASTCVGTLEFRSVAE-PIARIQPAISREPGSYFFL- 137 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~-~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 137 (499)
++|||||||+||+++|..|++. +.+||||++++++.| .|.+.....+.....++.. ...+ +....+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~gv~~~~~ 78 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGE----FAEQFNLRLFPH 78 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHH----HHHhCCCEEECC
Confidence 5899999999999999999874 468999999998766 4666666655444443332 1222 22335777764
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
++|+++|++.+.+.++. ..+.||+||||||+.|..|++||.+. .+.++++.++..+...+
T Consensus 79 ~~V~~id~~~~~v~~~~------------~~~~yd~LVlATG~~~~~p~i~G~~~-v~~~~~~~~~~~~~~~~------- 138 (377)
T PRK04965 79 TWVTDIDAEAQVVKSQG------------NQWQYDKLVLATGASAFVPPIPGREL-MLTLNSQQEYRAAETQL------- 138 (377)
T ss_pred CEEEEEECCCCEEEECC------------eEEeCCEEEECCCCCCCCCCCCCCce-EEEECCHHHHHHHHHHh-------
Confidence 68999999988887532 47999999999999999999999754 67778888877665543
Q ss_pred CCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-CCHHHHHHHHHHHH
Q 010844 218 DVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-FDDRLRHYATTQLS 295 (499)
Q Consensus 218 ~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-~~~~~~~~~~~~l~ 295 (499)
...++|+|||||++|+|+|..|.+.+ .+|+++++. .+++. +++.+.+.+.+.|+
T Consensus 139 ----------~~~~~vvViGgG~~g~e~A~~L~~~g--------------~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~ 194 (377)
T PRK04965 139 ----------RDAQRVLVVGGGLIGTELAMDLCRAG--------------KAVTLVDNAASLLASLMPPEVSSRLQHRLT 194 (377)
T ss_pred ----------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEecCCcccchhCCHHHHHHHHHHHH
Confidence 12358999999999999999998776 899999987 56654 58889999999999
Q ss_pred hCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEe
Q 010844 296 KSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAV 369 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~ 369 (499)
+.||+++.+ .|.+++.+ .+.+.+|++++||.||+|+|.+|+ .+++.++++.+ +| |.||++||| +.|||||+
T Consensus 195 ~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~g-i~vd~~l~t-s~~~VyA~ 271 (377)
T PRK04965 195 EMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVN-RG-IVVDSYLQT-SAPDIYAL 271 (377)
T ss_pred hCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcC-CC-EEECCCccc-CCCCEEEe
Confidence 999999998 89998764 367788999999999999999999 47777888775 35 999999999 89999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|||+.++. .. .+.++.|.+||+.+|+||..
T Consensus 272 GD~a~~~~----~~-~~~~~~a~~~g~~~a~n~~g 301 (377)
T PRK04965 272 GDCAEING----QV-LPFLQPIQLSAMALAKNLLG 301 (377)
T ss_pred eecEeECC----ce-eehHHHHHHHHHHHHHHhcC
Confidence 99997632 12 23567799999999999863
No 10
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=8.1e-38 Score=339.13 Aligned_cols=285 Identities=21% Similarity=0.367 Sum_probs=234.8
Q ss_pred EEEECCchHHHHHHHhccC---CCCeEEEEcCCCCccccc-chhhhhccCCCCCccccchhhhccccccCCCeEEEEE-E
Q 010844 65 VVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-H 139 (499)
Q Consensus 65 VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 139 (499)
|||||||+||+++|..|++ .+++|||||+++++.|.+ .++.+..|....+++..+..+. + ...+++++.+ +
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~---~-~~~gv~~~~g~~ 76 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDW---Y-EKHGITLYTGET 76 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHH---H-HHCCCEEEcCCe
Confidence 6999999999999998865 357999999999988874 4666777666555554444443 2 2357888875 8
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcC
Q 010844 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSD 218 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (499)
|+.||++++.|.+.+ + .++.||+||||||+.|+.|++||.+ ++++.+++++++..+++.+
T Consensus 77 V~~Id~~~k~V~~~~---g--------~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~-------- 137 (785)
T TIGR02374 77 VIQIDTDQKQVITDA---G--------RTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMA-------- 137 (785)
T ss_pred EEEEECCCCEEEECC---C--------cEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHh--------
Confidence 999999999888765 2 4799999999999999999999985 4677888999988877654
Q ss_pred CCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHHHh
Q 010844 219 VPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLSK 296 (499)
Q Consensus 219 ~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~~ 296 (499)
...++++|||||++|+|+|..|.+.+ .+|+++++. .+++ .+++...+.+.+.|++
T Consensus 138 ---------~~~k~vvVVGgG~~GlE~A~~L~~~G--------------~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~ 194 (785)
T TIGR02374 138 ---------QRFKKAAVIGGGLLGLEAAVGLQNLG--------------MDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ 194 (785)
T ss_pred ---------hcCCeEEEECCCHHHHHHHHHHHhcC--------------CeEEEEccCCchhhhhcCHHHHHHHHHHHHH
Confidence 12358999999999999999999887 899999986 5665 5789999999999999
Q ss_pred CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCeEEec
Q 010844 297 SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVG 370 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~G 370 (499)
.||+++++ .+.++.++ .|.++||+++++|+||+++|++|+. +++.++++.+ |.|.||++||| ++|||||+|
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~~~~T-s~p~IyA~G 271 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVNDSMQT-SDPDIYAVG 271 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECCCccc-CCCCEEEee
Confidence 99999999 78888653 5788999999999999999999994 6677788775 66999999999 999999999
Q ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 371 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 371 D~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||+..+. .....+..|.+||+++|.||.
T Consensus 272 D~a~~~~-----~~~gl~~~a~~qa~vaA~ni~ 299 (785)
T TIGR02374 272 ECAEHNG-----RVYGLVAPLYEQAKVLADHIC 299 (785)
T ss_pred ecceeCC-----cccccHHHHHHHHHHHHHHhc
Confidence 9997532 123357779999999999985
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=6.8e-37 Score=307.16 Aligned_cols=312 Identities=26% Similarity=0.366 Sum_probs=233.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chhhh-----h------ccC------CCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAST-----C------VGT------LEF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~~~-----~------~g~------~~~ 113 (499)
..+|+||||||+||..+|.++++.|.+|.|||++..+... | ++... . .|. .+.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 4689999999999999999999999999999998644322 1 11100 0 000 111
Q ss_pred Cccccc-------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 114 RSVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 114 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..+... +......+.+..+++++.++..-++ .++|.+... + ...+++|++|||||++|..|+
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~-~--------~~~~~a~~iiIATGS~p~~~~ 151 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGE-D--------KETITADNIIIATGSRPRIPP 151 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCC-C--------ceEEEeCEEEEcCCCCCcCCC
Confidence 111111 1111223444568999999988887 567777652 1 258999999999999999999
Q ss_pred CCCccccC-ccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010844 187 IHGVKENA-TFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+||+++.. +...+ + +....+|. +++|||||++|+|+|..++.++
T Consensus 152 ~~~~~~~~~~~s~~---~----------l~~~~lP~----------~lvIiGgG~IGlE~a~~~~~LG------------ 196 (454)
T COG1249 152 GPGIDGARILDSSD---A----------LFLLELPK----------SLVIVGGGYIGLEFASVFAALG------------ 196 (454)
T ss_pred CCCCCCCeEEechh---h----------cccccCCC----------EEEEECCCHHHHHHHHHHHHcC------------
Confidence 99986432 22211 1 12224564 9999999999999999999998
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCc--EEeeeEEEEcCCCCcch
Q 010844 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGT--EVPYGLLVWSTGVGPST 337 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~--~i~~D~vi~a~G~~p~~ 337 (499)
.+||++++. ++||.+++++++.+.+.|++.|++++++ ++++++.+ .+.+++|+ ++++|.+++|+|.+||.
T Consensus 197 --~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 197 --SKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred --CcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 999999997 7999999999999999999999999999 78888653 36677776 79999999999999994
Q ss_pred ---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 010844 338 ---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRAN 414 (499)
Q Consensus 338 ---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 414 (499)
-+++.|++++++|+|.||+++|| +.|||||+|||+. + |.+++.|..||++||.||.. .. .
T Consensus 275 ~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~------~---~~Lah~A~~eg~iaa~~i~g-~~----~-- 337 (454)
T COG1249 275 DGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIG------G---PMLAHVAMAEGRIAAENIAG-GK----R-- 337 (454)
T ss_pred CCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCC------C---cccHhHHHHHHHHHHHHHhC-CC----C--
Confidence 36788999999999999966666 8999999999984 2 56999999999999999875 11 1
Q ss_pred CcCcCCCCCCceecccceEEEecC
Q 010844 415 SAKDMELGDPFVYRHLGSMATIGR 438 (499)
Q Consensus 415 ~~~~~~~~~~~~~~~~g~~~~lG~ 438 (499)
...++.. -|+......+++++|.
T Consensus 338 ~~~d~~~-iP~~ift~Peia~VGl 360 (454)
T COG1249 338 TPIDYRL-IPSVVFTDPEIASVGL 360 (454)
T ss_pred CcCcccC-CCEEEECCCcceeeeC
Confidence 0011222 5666555667777776
No 12
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.6e-36 Score=312.33 Aligned_cols=286 Identities=20% Similarity=0.246 Sum_probs=214.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC---------CCccccc----chhhhh----------------ccCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFTP----LLASTC----------------VGTL 111 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~---------~~~~~~~----~~~~~~----------------~g~~ 111 (499)
.++||+|||||+||+.+|..+++.|.+|+|||+. ..+..+- +.+.-. .|..
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~ 103 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWE 103 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3579999999999999999999999999999962 2222221 111000 0110
Q ss_pred CCCccccchhhh--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEc
Q 010844 112 EFRSVAEPIARI--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIA 177 (499)
Q Consensus 112 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViA 177 (499)
.......++.++ ...+....+++++.+++..+|+....|++.+ + +...+.||+||||
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~---g------~~~~~~~d~LIIA 174 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLD---G------TKLRYTAKHILIA 174 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCC---C------cEEEEEcCEEEEe
Confidence 000111111111 1122334689999999999987755555432 1 1246899999999
Q ss_pred CCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHH
Q 010844 178 LGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV 257 (499)
Q Consensus 178 tG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~ 257 (499)
||+.|..|++||.+. . .+.+++..+. .. .++|+|||||++|+|+|..+..++
T Consensus 175 TGs~p~~p~ipG~~~-~---~~~~~~~~l~----------~~----------~k~vvVIGgG~ig~E~A~~l~~~G---- 226 (499)
T PLN02507 175 TGSRAQRPNIPGKEL-A---ITSDEALSLE----------EL----------PKRAVVLGGGYIAVEFASIWRGMG---- 226 (499)
T ss_pred cCCCCCCCCCCCccc-e---echHHhhhhh----------hc----------CCeEEEECCcHHHHHHHHHHHHcC----
Confidence 999999999999632 1 1233332221 11 249999999999999999998877
Q ss_pred HHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcC
Q 010844 258 RQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWST 331 (499)
Q Consensus 258 ~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~ 331 (499)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++. ++ +.+.+|+++++|.|++++
T Consensus 227 ----------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~ 296 (499)
T PLN02507 227 ----------ATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFAT 296 (499)
T ss_pred ----------CeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEee
Confidence 899999987 6888899999999999999999999999 8888864 33 556678899999999999
Q ss_pred CCCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 332 GVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|++|+. + ++.++++++++|+|.||+++|| +.|||||+|||+. . +.+++.|.+||+++|+||.
T Consensus 297 G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv~~------~---~~l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 297 GRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDVTN------R---INLTPVALMEGTCFAKTVF 361 (499)
T ss_pred cCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEcCC------C---CccHHHHHHHHHHHHHHHc
Confidence 999994 3 5677888888999999999999 9999999999994 1 5678999999999999985
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=3.8e-36 Score=308.29 Aligned_cols=279 Identities=22% Similarity=0.298 Sum_probs=208.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhh------h----------hccC-------CCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS------T----------CVGT-------LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~------~----------~~g~-------~~~~ 114 (499)
++||+|||||+||++||..|++.|++|+|||++. +..+- ..+. . ..|. .+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 4799999999999999999999999999999853 22211 0000 0 0010 0100
Q ss_pred cccc-------chhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC-C
Q 010844 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF-G 186 (499)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~-~ 186 (499)
.+.. .+...........+++++.++.... +.+.|.+.. ..+.||+||||||+.|..| +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~--~~~~v~v~~------------~~~~~d~vIiAtGs~p~~p~~ 146 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFT--KDGTVEVNG------------RDYTAPHILIATGGKPSFPEN 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCEEEECC------------EEEEeCEEEEecCCCCCCCCC
Confidence 1000 1111111122235788888877654 345665532 3689999999999999988 8
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010844 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
+||.+ ... +.++.. .....| ++++|||||++|+|+|..++.++
T Consensus 147 i~g~~-~~~---~~~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g------------- 189 (450)
T TIGR01421 147 IPGAE-LGT---DSDGFF----------ALEELP----------KRVVIVGAGYIAVELAGVLHGLG------------- 189 (450)
T ss_pred CCCCc-eeE---cHHHhh----------CccccC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 99863 211 111111 111122 49999999999999999999887
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCC-cEEeeeEEEEcCCCCcch-
Q 010844 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDG-TEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g-~~i~~D~vi~a~G~~p~~- 337 (499)
.+||++++. ++++.+++++.+.+.+.|++.||+++++ .|++++.+ .+++++| +++++|.||||+|++|+.
T Consensus 190 -~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 190 -SETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -CcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 899999987 6889999999999999999999999999 88888642 3566677 579999999999999995
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++.++++++++|+|.||+++|| +.|||||+|||+. . +..++.|.+||+.+|+||.
T Consensus 269 ~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~------~---~~~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 269 GLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVG------K---VELTPVAIAAGRKLSERLF 326 (450)
T ss_pred cCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCC------C---cccHHHHHHHHHHHHHHHh
Confidence 2 5677888899999999999999 9999999999994 2 5678899999999999985
No 14
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.7e-36 Score=309.76 Aligned_cols=281 Identities=20% Similarity=0.324 Sum_probs=210.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------hh-----ccC------CCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------TC-----VGT------LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~~-----~g~------~~~~~ 115 (499)
++||+||||||||++||..+++.|++|+|||++ .+...-. .+. .. .|. .+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 479999999999999999999999999999985 3322210 000 00 000 00000
Q ss_pred -------cccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010844 116 -------VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 116 -------~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
....+...........+++++.+++..++.+ .+.+.. ++ ..+.||+||||||+.|..|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~--~g--------~~~~~d~lIiATGs~p~~p~i~ 148 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQ--DG--------TTYTAKKILIAVGGRPQKPNLP 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEec--CC--------eEEEcCEEEEecCCcCCCCCCC
Confidence 0011111111222336889999999999865 344322 12 3799999999999999999999
Q ss_pred CccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010844 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
|.+. .. +..++..+ ... .++++|||+|++|+|+|..+..++ .
T Consensus 149 G~~~-~~---~~~~~~~l----------~~~----------~~~vvVIGgG~~g~E~A~~l~~~G--------------~ 190 (446)
T TIGR01424 149 GHEL-GI---TSNEAFHL----------PTL----------PKSILILGGGYIAVEFAGIWRGLG--------------V 190 (446)
T ss_pred Cccc-ee---chHHhhcc----------ccc----------CCeEEEECCcHHHHHHHHHHHHcC--------------C
Confidence 8632 11 22222211 111 248999999999999999998876 8
Q ss_pred EEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcch-h--c
Q 010844 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPST-L--V 339 (499)
Q Consensus 269 ~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~-~--~ 339 (499)
+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|.+++. + .+.+.+|+++++|.||+|+|..|+. . +
T Consensus 191 ~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l 270 (446)
T TIGR01424 191 QVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGL 270 (446)
T ss_pred eEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCc
Confidence 99999987 6788899999999999999999999999 8888863 3 3556678899999999999999994 2 4
Q ss_pred ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 340 KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 340 ~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+..+++++++|+|.||+++|| +.|||||+|||+. . +.+++.|.+||+++|+||.
T Consensus 271 ~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~------~---~~l~~~A~~~g~~~a~~i~ 324 (446)
T TIGR01424 271 EAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTD------R---INLTPVAIMEATCFANTEF 324 (446)
T ss_pred cccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCC------C---ccchhHHHHHHHHHHHHHh
Confidence 677888888899999999999 9999999999994 2 5688999999999999985
No 15
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=8.9e-36 Score=306.89 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=209.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh-----------h----h--ccC------CCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS-----------T----C--VGT------LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~-----------~----~--~g~------~~~~ 114 (499)
+++|+||||||||++||..|++.|++|+|||+. .+..+.+ .+. . . .|. .+..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWA 82 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHH
Confidence 579999999999999999999999999999986 2222110 000 0 0 010 0000
Q ss_pred ccccc-------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010844 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+... +.+.........+++++.++++.++. +.|++ + + ..+.||+||||||+.|..|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~-~---g--------~~~~~d~lViATGs~p~~p~i 148 (450)
T PRK06116 83 KLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV-N---G--------ERYTADHILIATGGRPSIPDI 148 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-C---C--------EEEEeCEEEEecCCCCCCCCC
Confidence 00000 11111111223588999999888864 56666 2 2 379999999999999999999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010844 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+ ..++. .+.. ..... .++|+|||+|++|+|+|..+.+.+
T Consensus 149 ~g~~-~~~~~---~~~~----------~~~~~----------~~~vvViGgG~~g~E~A~~l~~~g-------------- 190 (450)
T PRK06116 149 PGAE-YGITS---DGFF----------ALEEL----------PKRVAVVGAGYIAVEFAGVLNGLG-------------- 190 (450)
T ss_pred CCcc-eeEch---hHhh----------Ccccc----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 9863 22211 1111 11111 249999999999999999998876
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchh--
Q 010844 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTL-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~-- 338 (499)
.+|++++++ .+++.+++++.+.+.+.|++.||+++.+ +|.+++. + .+.+.+|+++++|.||+|+|.+|+..
T Consensus 191 ~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l 270 (450)
T PRK06116 191 SETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGL 270 (450)
T ss_pred CeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCC
Confidence 899999987 6788899999999999999999999998 8988863 2 35667888999999999999999942
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++.++++++++|+|.||+++|| +.|||||+|||+. . ++++..|.+||+.+|+||.
T Consensus 271 ~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~------~---~~~~~~A~~~g~~aa~~i~ 326 (450)
T PRK06116 271 GLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTG------R---VELTPVAIAAGRRLSERLF 326 (450)
T ss_pred CchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCC------C---cCcHHHHHHHHHHHHHHHh
Confidence 5667888888999999999998 9999999999984 1 5678899999999999985
No 16
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.2e-35 Score=305.13 Aligned_cols=287 Identities=20% Similarity=0.285 Sum_probs=210.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc-ccccc----hhh-----hhccCCCCCccc-------cchhh-h
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPL----LAS-----TCVGTLEFRSVA-------EPIAR-I 123 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~-~~~~~----~~~-----~~~g~~~~~~~~-------~~~~~-~ 123 (499)
++||+|||||+||++||..|++.|.+|+|||+.+.. ..+-. .+. ......+..... ..++. .
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999999999999999997642 22111 000 000001110000 01110 1
Q ss_pred ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHH
Q 010844 124 QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHA 203 (499)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~ 203 (499)
...+.+..++.++.+++..++.....|...+ + ..++.||+||||||+.|..|++||+++... +.+..+.
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~---g-------~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~~ 151 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPE---G-------NLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGL 151 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCCEEEEEeCC---C-------eEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhHh
Confidence 1123344588999999999876543333322 1 136899999999999999999999753211 1111111
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCC
Q 010844 204 QEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSF 282 (499)
Q Consensus 204 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~ 282 (499)
. .... ..++++|||+|++|+|+|..+.+++ .+|++++++ .++|.+
T Consensus 152 ~----------~~~~----------~~~~v~ViGgG~~g~E~A~~l~~~g--------------~~Vtli~~~~~~l~~~ 197 (441)
T PRK08010 152 L----------NLKE----------LPGHLGILGGGYIGVEFASMFANFG--------------SKVTILEAASLFLPRE 197 (441)
T ss_pred h----------cccc----------cCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCCc
Confidence 1 1111 2249999999999999999999877 899999987 688988
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEC-CCcEEeeeEEEEcCCCCcch-h--cccCCCCCCCCCceeeC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGID 355 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~-~g~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd 355 (499)
++++.+.+.+.|++.||+++++ +|.+++.+ .+.+. ++.++++|.|++|+|.+|+. + ++.++++++++|+|.||
T Consensus 198 ~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd 277 (441)
T PRK08010 198 DRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD 277 (441)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC
Confidence 9999999999999999999998 89888643 34332 23469999999999999995 3 45678888888999999
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++|| +.|||||+|||+. . ++.++.|..||+.++.||.
T Consensus 278 ~~~~T-s~~~IyA~GD~~~------~---~~~~~~a~~~~~~~~~~~~ 315 (441)
T PRK08010 278 KYLHT-TADNIWAMGDVTG------G---LQFTYISLDDYRIVRDELL 315 (441)
T ss_pred CCccc-CCCCEEEeeecCC------C---ccchhHHHHHHHHHHHHHc
Confidence 99999 9999999999994 2 5788999999999999985
No 17
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.8e-35 Score=305.84 Aligned_cols=288 Identities=19% Similarity=0.255 Sum_probs=211.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh--------hhc---------c-----CCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS--------TCV---------G-----TLEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~--------~~~---------g-----~~~~~ 114 (499)
.+++|+|||||+||+++|..|++.|.+|+|||+++.+..... .+. ... + ..+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFA 83 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHH
Confidence 458999999999999999999999999999999755433211 000 000 0 00000
Q ss_pred ccccc-------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010844 115 SVAEP-------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+... +.+.........++.++.+++..++.. .+++...+ + +...+.||+||||||+.|..|++
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~v~~~~-g------~~~~~~~d~lviATGs~p~~p~~ 154 (461)
T PRK05249 84 DLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPH--TVEVECPD-G------EVETLTADKIVIATGSRPYRPPD 154 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCC--EEEEEeCC-C------ceEEEEcCEEEEcCCCCCCCCCC
Confidence 00000 001111122336789999998888764 44443311 1 12479999999999999998887
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010844 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
++.... .+.+..+...+ .. ..++++|||||++|+|+|..++..+
T Consensus 155 ~~~~~~--~v~~~~~~~~~----------~~----------~~~~v~IiGgG~~g~E~A~~l~~~g-------------- 198 (461)
T PRK05249 155 VDFDHP--RIYDSDSILSL----------DH----------LPRSLIIYGAGVIGCEYASIFAALG-------------- 198 (461)
T ss_pred CCCCCC--eEEcHHHhhch----------hh----------cCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 775321 11122211111 11 1259999999999999999999887
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEECCCcEEeeeEEEEcCCCCcch-h--
Q 010844 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~--v~~~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ .|.+++ +++ +++++|+++++|.||+|+|.+|+. .
T Consensus 199 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 278 (461)
T PRK05249 199 VKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLN 278 (461)
T ss_pred CeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCC
Confidence 899999987 7899999999999999999999999998 888886 333 445678899999999999999994 2
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..+++++++|+|.||+++|| +.|||||+|||+.. ++++..|.+||+++|.||.
T Consensus 279 l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~~i~ 333 (461)
T PRK05249 279 LENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGF---------PSLASASMDQGRIAAQHAV 333 (461)
T ss_pred chhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCC---------cccHhHHHHHHHHHHHHHc
Confidence 5667888888999999999999 99999999999942 6788999999999999986
No 18
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=1e-36 Score=312.14 Aligned_cols=339 Identities=17% Similarity=0.140 Sum_probs=224.8
Q ss_pred ccccccccccc--ccccCCCCCC----CCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHH
Q 010844 3 LFKHLLRNPTA--KSYSYSSPSI----IMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCR 76 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~ 76 (499)
|+--++|+|.| +|+..|.+.. .+. ...++.+++|..+.......... +.......++|+|||||+|||+
T Consensus 73 ~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~-~v~i~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~V~IIG~G~aGl~ 147 (449)
T TIGR01316 73 LPAICGRVCPQERQCEGQCTVGKMFKDVGK-PVSIGALERFVADWERQHGIETE----PEKAPSTHKKVAVIGAGPAGLA 147 (449)
T ss_pred hhHHhccCCCCccchHhhCcCCCcCCCCCC-CccHHHHHHHHHhHHHhcCCCcC----CCCCCCCCCEEEEECcCHHHHH
Confidence 45678999999 9999999876 444 47788888887664321111111 1111234689999999999999
Q ss_pred HHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeec
Q 010844 77 LMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVT 156 (499)
Q Consensus 77 aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~ 156 (499)
+|..|++.|++|+|||+++....... ........+ .++. ......+. ..++.++.+.+. .+.+.++.
T Consensus 148 aA~~l~~~G~~V~vie~~~~~GG~l~-~gip~~~~~-~~~~---~~~~~~l~-~~gv~~~~~~~v-----~~~v~~~~-- 214 (449)
T TIGR01316 148 CASELAKAGHSVTVFEALHKPGGVVT-YGIPEFRLP-KEIV---VTEIKTLK-KLGVTFRMNFLV-----GKTATLEE-- 214 (449)
T ss_pred HHHHHHHCCCcEEEEecCCCCCcEee-ecCCCccCC-HHHH---HHHHHHHH-hCCcEEEeCCcc-----CCcCCHHH--
Confidence 99999999999999999875432211 111101111 1111 11111122 256777766543 22333322
Q ss_pred CccccCCCceeeeeCCeEEEcCCC-CccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEE
Q 010844 157 DELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCV 234 (499)
Q Consensus 157 ~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vv 234 (499)
....||+||||||+ .|..+++||.+ .+++...++.+...+ +.....+.. .......++|+
T Consensus 215 ----------~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~-------~~~~~~~~~-~~~~~~gk~Vv 276 (449)
T TIGR01316 215 ----------LFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANL-------MKAYEFPHA-DTPVYAGKSVV 276 (449)
T ss_pred ----------HHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhh-------ccccccccc-CCcccCCCeEE
Confidence 13469999999998 68888999974 223222222111111 000000000 00112356999
Q ss_pred EeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC
Q 010844 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS 311 (499)
Q Consensus 235 VvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~ 311 (499)
|||||++|+|+|..+.+++ .+||++++.. -++.. ....+.+++.||+++++ .+.++..
T Consensus 277 VIGgG~~a~d~A~~l~~~G--------------~~Vtlv~~~~~~~~~~~-----~~~~~~l~~~GV~~~~~~~~~~i~~ 337 (449)
T TIGR01316 277 VIGGGNTAVDSARTALRLG--------------AEVHCLYRRTREDMTAR-----VEEIAHAEEEGVKFHFLCQPVEIIG 337 (449)
T ss_pred EECCCHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCC-----HHHHHHHHhCCCEEEeccCcEEEEE
Confidence 9999999999999999887 7899999862 22222 22335678899999988 7777743
Q ss_pred ---C---eEEEC---------CC-----------cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCC
Q 010844 312 ---Q---KLILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (499)
Q Consensus 312 ---~---~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~ 364 (499)
+ +|++. +| .++++|.||+++|+.|+. +++.++++++++|+|.||+++|| +.|
T Consensus 338 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~T-s~~ 416 (449)
T TIGR01316 338 DEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRT-SIP 416 (449)
T ss_pred cCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCcc-CCC
Confidence 1 23332 22 269999999999999994 66677888888999999999999 999
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010844 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+|||+|||+. | +.++..|++||+.||.+|..++
T Consensus 417 ~VfA~GD~~~-----g----~~~v~~Ai~~G~~AA~~I~~~L 449 (449)
T TIGR01316 417 GVFAGGDIIL-----G----AATVIRAMGQGKRAAKSINEYL 449 (449)
T ss_pred CEEEecCCCC-----C----cHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999984 2 6789999999999999998653
No 19
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-35 Score=305.67 Aligned_cols=286 Identities=20% Similarity=0.256 Sum_probs=208.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhh---------------hhccCCCCCccccchh
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLAS---------------TCVGTLEFRSVAEPIA 121 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~---------------~~~g~~~~~~~~~~~~ 121 (499)
.+++|+|||||+||+++|..|++.|++|+|||+++.+..+- ..+. .....+.......++.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 35899999999999999999999999999999875443321 1100 0000011111111111
Q ss_pred hhc--------------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC-CC
Q 010844 122 RIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST-FG 186 (499)
Q Consensus 122 ~~~--------------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~-~~ 186 (499)
.+. ..+.+..+++++.+++..+|. +.+.+...+ + +..++.||+||||||++|.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~--~~v~v~~~~-g------~~~~~~~d~lViATGs~p~~~p~ 153 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGG--NTLEVTGED-G------KTTVIEFDNAIIAAGSRPIQLPF 153 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecCC-C------ceEEEEcCEEEEeCCCCCCCCCC
Confidence 110 112234689999998887754 556554311 1 12479999999999999974 55
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010844 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
+++..+..+ +..++..+ ...| ++++|||||++|+|+|..+.+++
T Consensus 154 ~~~~~~~v~---~~~~~~~~----------~~~~----------~~vvIiGgG~iG~E~A~~l~~~G------------- 197 (471)
T PRK06467 154 IPHDDPRIW---DSTDALEL----------KEVP----------KRLLVMGGGIIGLEMGTVYHRLG------------- 197 (471)
T ss_pred CCCCCCcEE---ChHHhhcc----------ccCC----------CeEEEECCCHHHHHHHHHHHHcC-------------
Confidence 665433322 22232221 1122 49999999999999999999887
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCC----cEEeeeEEEEcCCCCcc
Q 010844 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG----TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g----~~i~~D~vi~a~G~~p~ 336 (499)
.+||++++. +++|.+++++.+.+.+.|++. |+++++ .|.+++. +. +.++++ +++++|.||+++|.+|+
T Consensus 198 -~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 198 -SEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred -CCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 899999987 789999999999999999988 999999 8888863 33 334332 46999999999999999
Q ss_pred h-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 337 T-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 337 ~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
. + ++..+++++++|+|.||+++|| +.|||||+|||+. . |++++.|.+||+.+|.||.
T Consensus 276 ~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~------~---~~la~~A~~eG~~aa~~i~ 335 (471)
T PRK06467 276 GKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVG------Q---PMLAHKGVHEGHVAAEVIA 335 (471)
T ss_pred CCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcC------C---cccHHHHHHHHHHHHHHHc
Confidence 4 2 4567888899999999999999 9999999999984 1 6789999999999999986
No 20
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=7.1e-35 Score=301.11 Aligned_cols=283 Identities=21% Similarity=0.285 Sum_probs=208.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc----cchhh----------------hhccCC-------CC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAS----------------TCVGTL-------EF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~~----------------~~~g~~-------~~ 113 (499)
.++|||||||||||++||..|++.|++|+|||+.. +... ...+. ...|.. +.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 45899999999999999999999999999999863 2111 00000 001111 11
Q ss_pred Cccccchh--------hhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 114 RSVAEPIA--------RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 114 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..+....+ .+...+....++.++.++...+ +.+.+.++. .++.||+||||||+.|..|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~--~~~~v~v~~------------~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFE--SPNTVRVGG------------ETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEc--cCCEEEECc------------EEEEeCEEEEcCCCCCCCC
Confidence 11111110 1111122223788888876654 456676632 3689999999999999999
Q ss_pred CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010844 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 186 ~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
++||.+... +.+..+... .... .++|+|||+|++|+|+|..+.+++
T Consensus 149 ~i~G~~~~~--~~~~~~~~~----------~~~~----------~~~vvVIGgG~~g~E~A~~l~~~G------------ 194 (463)
T PRK06370 149 PIPGLDEVG--YLTNETIFS----------LDEL----------PEHLVIIGGGYIGLEFAQMFRRFG------------ 194 (463)
T ss_pred CCCCCCcCc--eEcchHhhC----------cccc----------CCEEEEECCCHHHHHHHHHHHHcC------------
Confidence 999975321 111111111 1111 259999999999999999999877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEC---CCcEEeeeEEEEcCCCCcc
Q 010844 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN---DGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~---~g~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++.+ + +.+. +++++++|.||+|+|.+|+
T Consensus 195 --~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 195 --SEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred --CeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 899999987 6888899999999999999999999998 89888753 2 3332 3457999999999999999
Q ss_pred h--h-cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 337 T--L-VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 337 ~--~-~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
. + ++..+++++++|+|.||+++|| +.|||||+|||+.. ++++..|..||+++|+||..
T Consensus 273 ~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~---------~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 273 TDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGR---------GAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred CCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCC---------cccHHHHHHHHHHHHHHHhC
Confidence 4 3 5667888888999999999999 99999999999842 66789999999999999863
No 21
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=3.2e-35 Score=303.67 Aligned_cols=288 Identities=18% Similarity=0.252 Sum_probs=212.4
Q ss_pred CCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h-----------hhh------ccC------C
Q 010844 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STC------VGT------L 111 (499)
Q Consensus 59 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~-----------~~~------~g~------~ 111 (499)
+..+++|+|||||+||+++|..|++.|.+|+|||++. +..+-.. + ... .|. +
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 3457899999999999999999999999999999863 2111000 0 000 010 0
Q ss_pred CCCccccchhhhc---------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc
Q 010844 112 EFRSVAEPIARIQ---------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (499)
Q Consensus 112 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~ 182 (499)
+...+....++.. ..+....++.++.++++.+|.+...|++.+ + ...+++||+||||||+.|
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~---g------~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLND---G------GEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecC---C------CeEEEECCEEEEeCCCCC
Confidence 0001111111110 112233579999999999998877776644 1 124799999999999999
Q ss_pred cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010844 183 STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 183 ~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
..|++||+++..+ .+..++..+ ... .++++|||+|++|+|+|..|.+++
T Consensus 153 ~~p~i~G~~~~~~--~~~~~~~~l----------~~~----------~~~vvViG~G~~G~E~A~~l~~~g--------- 201 (468)
T PRK14694 153 AEPPVPGLAETPY--LTSTSALEL----------DHI----------PERLLVIGASVVALELAQAFARLG--------- 201 (468)
T ss_pred CCCCCCCCCCCce--Ecchhhhch----------hcC----------CCeEEEECCCHHHHHHHHHHHHcC---------
Confidence 9999999854321 122222211 111 249999999999999999999887
Q ss_pred CCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEE-CCCcEEeeeEEEEcCCCCcch-
Q 010844 263 HVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLIL-NDGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~-~~g~~i~~D~vi~a~G~~p~~- 337 (499)
.+|+++++.++++.+++++.+.+++.|++.||+++.+ .+.+++.+ .+.+ .++.++++|.||+|+|.+|+.
T Consensus 202 -----~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 202 -----SRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred -----CeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcC
Confidence 8999999878889899999999999999999999998 88888643 2322 234579999999999999995
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+ ++.++++. ++|+|.||+++|| +.|||||+|||+.. +..++.|..||+.+|.||.
T Consensus 277 ~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~ 333 (468)
T PRK14694 277 NLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTDQ---------PQFVYVAAAGGSRAAINMT 333 (468)
T ss_pred CCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCCC---------cccHHHHHHHHHHHHHHhc
Confidence 3 24567765 5789999999999 99999999999952 6678899999999999985
No 22
>PLN02546 glutathione reductase
Probab=100.00 E-value=4.2e-35 Score=304.59 Aligned_cols=280 Identities=22% Similarity=0.331 Sum_probs=207.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC---------CCcccc-------c---ch-----hhhh-----ccC--
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR---------NHMVFT-------P---LL-----ASTC-----VGT-- 110 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~---------~~~~~~-------~---~~-----~~~~-----~g~-- 110 (499)
.+||+|||||+||+.||..+++.|.+|+|||+. ..+... | ++ .... .|.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~ 158 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKY 158 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCccc
Confidence 479999999999999999999999999999961 111111 1 00 0000 010
Q ss_pred -----CCCCc-------cccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010844 111 -----LEFRS-------VAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 111 -----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
+++.. ....+...........+++++.++++.++.. .|.++. ..+.||+|||||
T Consensus 159 ~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~V~v~G------------~~~~~D~LVIAT 224 (558)
T PLN02546 159 ETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--TVDVDG------------KLYTARNILIAV 224 (558)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--EEEECC------------EEEECCEEEEeC
Confidence 01000 0111111112223346899999999998764 555421 378999999999
Q ss_pred CCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010844 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 179 G~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
|++|..|++||.+ ++ .+..++.. .. ...++|+|||||++|+|+|..|..++
T Consensus 225 Gs~p~~P~IpG~~-~v---~~~~~~l~----------~~----------~~~k~V~VIGgG~iGvE~A~~L~~~g----- 275 (558)
T PLN02546 225 GGRPFIPDIPGIE-HA---IDSDAALD----------LP----------SKPEKIAIVGGGYIALEFAGIFNGLK----- 275 (558)
T ss_pred CCCCCCCCCCChh-hc---cCHHHHHh----------cc----------ccCCeEEEECCCHHHHHHHHHHHhcC-----
Confidence 9999999999973 22 12222211 11 12359999999999999999998876
Q ss_pred HhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC---CeEE--ECCCcEEeeeEEEEcC
Q 010844 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---QKLI--LNDGTEVPYGLLVWST 331 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~~v~--~~~g~~i~~D~vi~a~ 331 (499)
.+|+++++. ++++.+++++.+.+.+.|+++||+++++ .+.+++. +.+. +.+++.+.+|.|||++
T Consensus 276 ---------~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~ 346 (558)
T PLN02546 276 ---------SDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFAT 346 (558)
T ss_pred ---------CeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEee
Confidence 899999987 6889999999999999999999999999 7888853 3333 3444445689999999
Q ss_pred CCCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 332 GVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|++|+. + +++++++++++|+|.||+++|| +.|||||+|||+. . +++++.|.+||+.+|+||.
T Consensus 347 G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~------~---~~l~~~A~~~g~~~a~~i~ 411 (558)
T PLN02546 347 GRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTD------R---INLTPVALMEGGALAKTLF 411 (558)
T ss_pred ccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCC------C---cccHHHHHHHHHHHHHHHc
Confidence 999995 3 4678898888999999999999 9999999999994 1 5678899999999999985
No 23
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=6.9e-35 Score=299.86 Aligned_cols=293 Identities=24% Similarity=0.341 Sum_probs=212.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCC--------CCcccc-------c---chhh-----hhc-----cC-
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPR--------NHMVFT-------P---LLAS-----TCV-----GT- 110 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~--------~~~~~~-------~---~~~~-----~~~-----g~- 110 (499)
.++||+|||||++|..||..+++. |.+|+|||++ ..+... | ++.. ... |.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 458999999999999999999996 8999999973 222221 1 0000 000 10
Q ss_pred -------CCCCcccc-------chhhhccc-cccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEE
Q 010844 111 -------LEFRSVAE-------PIARIQPA-ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLV 175 (499)
Q Consensus 111 -------~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LV 175 (499)
.+...+.. .++.-... +....++++++++...++ .++|.+....++. .++...+.||+||
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~---~~~~~~~~~d~lI 156 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPK---SAVKERLQAEHIL 156 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCC---CCcceEEECCEEE
Confidence 00000000 11111111 223358999999976665 5677775421110 0112479999999
Q ss_pred EcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHH
Q 010844 176 IALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMR 255 (499)
Q Consensus 176 iAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~ 255 (499)
||||+.|..|++||.+. .+ +..++.. .... .++++|||||++|+|+|..+..+..
T Consensus 157 IATGs~p~~p~i~G~~~-~~---~~~~~~~----------~~~~----------~~~vvIIGgG~iG~E~A~~~~~l~~- 211 (486)
T TIGR01423 157 LATGSWPQMLGIPGIEH-CI---SSNEAFY----------LDEP----------PRRVLTVGGGFISVEFAGIFNAYKP- 211 (486)
T ss_pred EecCCCCCCCCCCChhh-ee---chhhhhc----------cccC----------CCeEEEECCCHHHHHHHHHHHHhcc-
Confidence 99999999999999742 22 2222211 1111 2599999999999999998876520
Q ss_pred HHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEE
Q 010844 256 DVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLV 328 (499)
Q Consensus 256 ~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi 328 (499)
.+.+||++++. ++++.+++++.+.+.+.|+++||+++++ .+.+++. + .+.+.+|+++++|.|+
T Consensus 212 ----------~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl 281 (486)
T TIGR01423 212 ----------RGGKVTLCYRNNMILRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVM 281 (486)
T ss_pred ----------CCCeEEEEecCCccccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEE
Confidence 12899999987 6899999999999999999999999999 7888863 2 3666788899999999
Q ss_pred EcCCCCcchh---cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 329 WSTGVGPSTL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 329 ~a~G~~p~~~---~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+|+|++|+.. ++..+++++++|+|.||+++|| +.|||||+|||+. . ++.++.|.+||+++|+||.
T Consensus 282 ~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~IyA~GDv~~------~---~~l~~~A~~qG~~aa~ni~ 349 (486)
T TIGR01423 282 MAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPNIYAIGDVTD------R---VMLTPVAINEGAAFVDTVF 349 (486)
T ss_pred EeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHh
Confidence 9999999952 3567888888999999999998 9999999999984 2 6788999999999999985
No 24
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-36 Score=309.88 Aligned_cols=341 Identities=18% Similarity=0.129 Sum_probs=225.0
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010844 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-|+|+|.| +|+..|.+...+.| ..|..+++|..+........+ ........++|+|||||+|||++|.+
T Consensus 85 ~p~~~grvC~~~~~Ce~~C~r~~~~~~-v~I~~l~r~~~~~~~~~~~~~-----~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 85 LPAVCGRVCPQESQCEGKCVLGIKGEP-VAIGKLERFVADWARENGIDL-----SETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred chhhhhccCCCCCChHHHhcCCCCCCC-eehhHHHHHHHHHHHHcCCCC-----CCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 56678999998 99999999988764 788888888876432111111 11122346899999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010844 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|||+.+....... .......+..+.+.. .....+. ..++.++.++... +.+.+++ .
T Consensus 159 l~~~G~~V~v~e~~~~~GG~l~-~gip~~~l~~~~~~~---~~~~~~~-~~gv~i~~~~~v~-----~~v~~~~---~-- 223 (464)
T PRK12831 159 LAKMGYDVTIFEALHEPGGVLV-YGIPEFRLPKETVVK---KEIENIK-KLGVKIETNVVVG-----KTVTIDE---L-- 223 (464)
T ss_pred HHhCCCeEEEEecCCCCCCeee-ecCCCccCCccHHHH---HHHHHHH-HcCCEEEcCCEEC-----CcCCHHH---H--
Confidence 9999999999998775432211 111000111111111 1111122 2467766655331 2232221 0
Q ss_pred cCCCceeeeeCCeEEEcCCC-CccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCc
Q 010844 161 TLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGg 238 (499)
...+.||+||||||+ .|+.+++||.+ +++++..++.+...+... +. +. ........++|+||||
T Consensus 224 -----~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~----~~----~~-~~~~~~~gk~VvVIGg 289 (464)
T PRK12831 224 -----LEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKA----YK----PE-YDTPIKVGKKVAVVGG 289 (464)
T ss_pred -----HhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhccc----cc----cc-ccCcccCCCeEEEECC
Confidence 024579999999998 58889999975 333332222211111000 00 00 0001134579999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-
Q 010844 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q- 312 (499)
Q Consensus 239 G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~- 312 (499)
|++|+|+|..+.+++ .+|+++++.. .++....++ +.+++.||+++++ .+.++.. +
T Consensus 290 G~va~d~A~~l~r~G--------------a~Vtlv~r~~~~~m~a~~~e~-----~~a~~eGV~i~~~~~~~~i~~~~~g 350 (464)
T PRK12831 290 GNVAMDAARTALRLG--------------AEVHIVYRRSEEELPARVEEV-----HHAKEEGVIFDLLTNPVEILGDENG 350 (464)
T ss_pred cHHHHHHHHHHHHcC--------------CEEEEEeecCcccCCCCHHHH-----HHHHHcCCEEEecccceEEEecCCC
Confidence 999999999999987 7899999752 344322221 3356789999988 6777642 2
Q ss_pred ---eEEEC------------------CCc--EEeeeEEEEcCCCCcch-hccc-CCCCCCCCCceeeCCC-CCCCCCCCe
Q 010844 313 ---KLILN------------------DGT--EVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDEW-LRVPSVQDV 366 (499)
Q Consensus 313 ---~v~~~------------------~g~--~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~~-l~~~~~~~I 366 (499)
+|.+. +|+ ++++|.||+|+|+.|+. ++.. .+++++++|+|.||++ ++| +.|+|
T Consensus 351 ~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~T-s~pgV 429 (464)
T PRK12831 351 WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLT-SKEGV 429 (464)
T ss_pred eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCcc-CCCCE
Confidence 13221 222 69999999999999994 5554 5788888899999998 888 99999
Q ss_pred EEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 367 fa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+|||+. | +.++..|+.+|+.||.+|.+++.
T Consensus 430 fAaGD~~~-----g----~~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 430 FAGGDAVT-----G----AATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred EEeCCCCC-----C----chHHHHHHHHHHHHHHHHHHHhc
Confidence 99999984 2 66889999999999999999885
No 25
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=8.2e-36 Score=320.20 Aligned_cols=334 Identities=15% Similarity=0.124 Sum_probs=223.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010844 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+--++|+|.|+|+..|+|...+. ...|..++++..+..-... .+.. ..+......++|+|||||+||++||..|+
T Consensus 484 lP~icGrVCph~Ce~~C~R~~~d~-pV~I~~Lkr~a~d~~~~~~-~~~~--~~~~~~~tgKkVaIIGgGPAGLsAA~~La 559 (1019)
T PRK09853 484 LPAITGHICDHQCQYNCTRLDYDE-AVNIRELKKVALEKGWDEY-KQRW--HKPAGIGSRKKVAVIGAGPAGLAAAYFLA 559 (1019)
T ss_pred hhhHhhCcCCchhHHHhcCCCCCC-CeeccHHHHHHHhhHHHhc-cccc--CCCCccCCCCcEEEECCCHHHHHHHHHHH
Confidence 456789999999999999998776 4888888888766432110 0010 01111234679999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010844 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+++....... . ...+...+.+ .+......+.. .++++..+....+ .++.
T Consensus 560 r~G~~VtV~Ek~~~~GG~lr-~-~IP~~Rlp~e---vL~~die~l~~-~GVe~~~gt~Vdi-------~le~-------- 618 (1019)
T PRK09853 560 RAGHPVTVFEREENAGGVVK-N-IIPQFRIPAE---LIQHDIEFVKA-HGVKFEFGCSPDL-------TVEQ-------- 618 (1019)
T ss_pred HcCCeEEEEecccccCccee-e-ecccccccHH---HHHHHHHHHHH-cCCEEEeCceeEE-------Ehhh--------
Confidence 99999999999876543211 1 1111100111 11111111222 4677766543322 2221
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChH
Q 010844 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~ 241 (499)
.....||+||||||+. +..+++||.+++++. .++.....++ .. +....+++|+|||||++
T Consensus 619 ---L~~~gYDaVILATGA~~~~~l~IpG~~~gV~s--aldfL~~~k~-~~-------------~~~~~GKrVVVIGGGnV 679 (1019)
T PRK09853 619 ---LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIK--ALPFLEEYKN-KG-------------TALKLGKHVVVVGGGNT 679 (1019)
T ss_pred ---heeccCCEEEECcCCCCCCCCCCCCccCCcee--hHHHHHHHhh-hc-------------ccccCCCEEEEECCChH
Confidence 1245699999999997 455678886543322 1111111100 00 01123469999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-eEE--
Q 010844 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-KLI-- 315 (499)
Q Consensus 242 gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-~v~-- 315 (499)
|+|+|..+.+.+. ..+|++++++ ..+|..++++.+. + +.||+++.. .+.+++.+ .+.
T Consensus 680 AmD~Ar~a~RlgG------------akeVTLVyRr~~~~MPA~~eEle~A----l-eeGVe~~~~~~p~~I~~dG~l~~~ 742 (1019)
T PRK09853 680 AMDAARAALRVPG------------VEKVTVVYRRTKQEMPAWREEYEEA----L-EDGVEFKELLNPESFDADGTLTCR 742 (1019)
T ss_pred HHHHHHHHHhcCC------------CceEEEEEccCcccccccHHHHHHH----H-HcCCEEEeCCceEEEEcCCcEEEE
Confidence 9999998876531 1489999986 4667665544332 2 469999987 66666522 121
Q ss_pred -----------------ECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEecccccccc
Q 010844 316 -----------------LNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE 377 (499)
Q Consensus 316 -----------------~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~ 377 (499)
..++.++++|.||+|+|..|+ .++...+++++++|++.||+++|| +.|+|||+|||+.
T Consensus 743 ~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqT-s~pgVFAaGD~a~--- 818 (1019)
T PRK09853 743 VMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGET-SLTNVYMIGDVQR--- 818 (1019)
T ss_pred EEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCccc-CCCCEEEEecccc---
Confidence 123357999999999999999 577778888888999999999999 9999999999984
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 378 STGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 378 ~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
| |.++..|+.||+.||++|.....
T Consensus 819 --G----p~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 819 --G----PSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred --C----chHHHHHHHHHHHHHHHHhhhcC
Confidence 2 67899999999999999987553
No 26
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.4e-34 Score=298.30 Aligned_cols=287 Identities=24% Similarity=0.350 Sum_probs=210.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chhhh----------hccCC---------C
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAST----------CVGTL---------E 112 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~~~----------~~g~~---------~ 112 (499)
|++|+|||||++|+.+|..+++.|.+|+|||++. +... | ++... ..|.. +
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 4689999999999999999999999999999874 2221 1 11000 00110 0
Q ss_pred CCccccchhhh-------ccccccCCCeEEEEEEEEEEE--CCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010844 113 FRSVAEPIARI-------QPAISREPGSYFFLSHCAGID--TDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 113 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~id--~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
...+....+.+ ........+++++.+++..++ .+.+.+.+...+ + +..++.||+||||||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~-g------~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTAD-G------GEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCC-C------ceEEEecCEEEEcCCCCCC
Confidence 00010011111 111122358999999998865 455666664311 1 1236899999999999998
Q ss_pred CCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010844 184 TFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 184 ~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
.|++++.. +..++.+++. .....| ++++|||+|++|+|+|..|++++
T Consensus 153 ~~p~~~~~~~~v~~~~~~~-------------~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~g--------- 200 (466)
T PRK07845 153 ILPTAEPDGERILTWRQLY-------------DLDELP----------EHLIVVGSGVTGAEFASAYTELG--------- 200 (466)
T ss_pred CCCCCCCCCceEEeehhhh-------------cccccC----------CeEEEECCCHHHHHHHHHHHHcC---------
Confidence 76554432 2233322211 111122 48999999999999999998877
Q ss_pred CCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEECCCcEEeeeEEEEcCCCCcc
Q 010844 263 HVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~--v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. ++++.+++++.+.+.+.|+++||+++++ ++.+++ +++ +.+.+|+++++|.|++++|++|+
T Consensus 201 -----~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 201 -----VKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred -----CeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 899999986 7889999999999999999999999999 888885 333 45678889999999999999999
Q ss_pred hh---cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 337 TL---VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 337 ~~---~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
.. +++++++++++|+|.||+++|| +.|||||+|||+.. +++++.|..||+++|.||.
T Consensus 276 ~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---------~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 276 TAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGV---------LPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred CCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCC---------ccchhHHHHHHHHHHHHHc
Confidence 52 5677898888999999999999 99999999999952 6789999999999999986
No 27
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.2e-34 Score=297.84 Aligned_cols=288 Identities=17% Similarity=0.201 Sum_probs=208.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhh---------------hhc-----cCC----CCC--
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS---------------TCV-----GTL----EFR-- 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~---------------~~~-----g~~----~~~-- 114 (499)
.+++|+|||||+||+++|..|++.|.+|+|||+++.+....+..+ ... |.. +.+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 358999999999999999999999999999998754332211000 000 110 000
Q ss_pred ccc-------cchhh--hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 115 SVA-------EPIAR--IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 115 ~~~-------~~~~~--~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
.+. ..++. +...+....++.++.+++..++. +.+.+...+ + +..++.||+||||||+.|..|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-g------~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG--NTLVVRLHD-G------GERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC--CEEEEEeCC-C------ceEEEEeCEEEEecCCCCCCC
Confidence 000 00100 11112222478899998877765 455554311 1 124799999999999999999
Q ss_pred CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010844 186 GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 186 ~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
++||.++..+ ..+ .+. + ..... .++++|||+|++|+|+|..+..++
T Consensus 166 ~i~G~~~~~~-~~~-~~~--l--------~~~~~----------~k~vvVIGgG~iG~E~A~~l~~~G------------ 211 (479)
T PRK14727 166 PIPGLMDTPY-WTS-TEA--L--------FSDEL----------PASLTVIGSSVVAAEIAQAYARLG------------ 211 (479)
T ss_pred CCCCcCccce-ecc-hHH--h--------ccccC----------CCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 9999753211 111 111 1 11111 259999999999999999999877
Q ss_pred CceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEE-CCCcEEeeeEEEEcCCCCcch-h--
Q 010844 266 DYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLIL-NDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 266 ~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~-~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ +|.+++. +.+.+ .++.++++|.||+|+|..|+. +
T Consensus 212 --~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~l~ 289 (479)
T PRK14727 212 --SRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHDLN 289 (479)
T ss_pred --CEEEEEEcCCCCCcchHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccCCC
Confidence 8999999878888899999999999999999999998 8888753 33333 223469999999999999995 2
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..+++++++|+|.||+++|| +.|||||+|||+.. |..++.|..||+.+|.||.
T Consensus 290 l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~G~~aa~~i~ 344 (479)
T PRK14727 290 LEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDL---------PQFVYVAAAAGSRAGINMT 344 (479)
T ss_pred chhhCceecCCCCEEECCCeec-CCCCEEEeeecCCc---------chhhhHHHHHHHHHHHHHc
Confidence 4566888888999999999999 99999999999952 6678899999999999985
No 28
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-35 Score=303.53 Aligned_cols=286 Identities=23% Similarity=0.329 Sum_probs=207.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhh---------------h-----ccC------CCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---------------C-----VGT------LEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~---------------~-----~g~------~~~~ 114 (499)
..+||+|||||+||++||..|++.|++|+|||++. +......... . .|. .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 35899999999999999999999999999999875 3222110000 0 000 0111
Q ss_pred ccccchhh-------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010844 115 SVAEPIAR-------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 115 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+....+. -...+....+++++.++++.+|... +.+...+ + ...+.||+||||||+.|..|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~--~~v~~~~-~-------~~~~~~d~lViAtGs~p~~~-- 149 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNT--VRVMTED-G-------EQTYTAKNIILATGSRPREL-- 149 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCE--EEEecCC-C-------cEEEEeCEEEEeCCCCCCCC--
Confidence 11111000 0111223468999999998887654 4443211 1 14799999999999998653
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010844 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+.....+.+..++..+. . ..++++|||||++|+|+|..+.+++
T Consensus 150 pg~~~~~~~v~~~~~~~~~~----------~----------~~~~vvVvGgG~~g~E~A~~l~~~g-------------- 195 (462)
T PRK06416 150 PGIEIDGRVIWTSDEALNLD----------E----------VPKSLVVIGGGYIGVEFASAYASLG-------------- 195 (462)
T ss_pred CCCCCCCCeEEcchHhhCcc----------c----------cCCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 56532221222333332211 1 1249999999999999999998876
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEECCC---cEEeeeEEEEcCCCCcch-
Q 010844 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDG---TEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~~g---~~i~~D~vi~a~G~~p~~- 337 (499)
.+||++++. +++|.+++++.+.+.+.|++.||+++++ +|.+++.+ . +.++++ +++++|.||+|+|.+|+.
T Consensus 196 ~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 196 AEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred CeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 899999986 7889999999999999999999999999 89998753 3 344555 679999999999999994
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+ ++..+++.+ +|+|.||+++|+ +.|+|||+|||+. .++++..|.+||+.+|.||..
T Consensus 276 ~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~---------~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 276 NLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVG---------GPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCC---------CcchHHHHHHHHHHHHHHHcC
Confidence 3 356788887 899999999998 9999999999994 167899999999999999863
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.9e-34 Score=305.36 Aligned_cols=287 Identities=19% Similarity=0.239 Sum_probs=209.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhh---------------hh--ccCC------CC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LAS---------------TC--VGTL------EF 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~---------------~~--~g~~------~~ 113 (499)
..++|+|||||+||+++|..|++.|.+|+|||++ .+..+.+ .+. .. .|.. ..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3589999999999999999999999999999987 3322110 000 00 0110 00
Q ss_pred Cccccchhhhc---------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010844 114 RSVAEPIARIQ---------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 114 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..+....+... ..+....++.++++++..++.....|.+.+ + +..++.||+||||||+.|..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~---g------~~~~~~~d~lviAtGs~p~~ 246 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLND---G------GERVVAFDRCLIATGASPAV 246 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCC---C------ceEEEEcCEEEEcCCCCCCC
Confidence 01111101000 112232478999999998876543443322 1 12479999999999999999
Q ss_pred CCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010844 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 185 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
|++||.++..+ +.+ .+. +..... .++++|||||++|+|+|..+.+++
T Consensus 247 p~i~g~~~~~~-~~~-~~~----------~~~~~~----------~~~vvViGgG~ig~E~A~~l~~~g----------- 293 (561)
T PRK13748 247 PPIPGLKETPY-WTS-TEA----------LVSDTI----------PERLAVIGSSVVALELAQAFARLG----------- 293 (561)
T ss_pred CCCCCCCccce-Ecc-HHH----------hhcccC----------CCeEEEECCCHHHHHHHHHHHHcC-----------
Confidence 99999754221 111 111 111112 249999999999999999999887
Q ss_pred CCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEEEC-CCcEEeeeEEEEcCCCCcch-h-
Q 010844 265 KDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLILN-DGTEVPYGLLVWSTGVGPST-L- 338 (499)
Q Consensus 265 ~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~~~-~g~~i~~D~vi~a~G~~p~~-~- 338 (499)
.+|+++++.++++.+++++.+.+.+.|++.||+++++ .+.+++. +.+.+. ++.++++|.||+|+|.+||. +
T Consensus 294 ---~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l 370 (561)
T PRK13748 294 ---SKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSL 370 (561)
T ss_pred ---CEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCc
Confidence 8999999887888899999999999999999999998 8888864 233322 23479999999999999995 3
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++.+++++++|+|.||+++|| +.|||||+|||+.. +..++.|..||+++|.||.
T Consensus 371 ~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~---------~~~~~~A~~~g~~aa~~i~ 426 (561)
T PRK13748 371 ALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQ---------PQFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCC---------ccchhHHHHHHHHHHHHHc
Confidence 4677888888999999999999 99999999999952 6778899999999999985
No 30
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.4e-34 Score=298.36 Aligned_cols=288 Identities=20% Similarity=0.230 Sum_probs=209.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC--------Ccccc----cchh-----------hhh--ccC--CCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFT----PLLA-----------STC--VGT--LEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~----~~~~-----------~~~--~g~--~~~~ 114 (499)
++||+|||||+||+.+|..+++.|.+|+|||+.. .+... ...| ... ... +...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 3799999999999999999999999999999731 11111 0000 000 000 0100
Q ss_pred c-cccc--------------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010844 115 S-VAEP--------------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 115 ~-~~~~--------------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
. ...+ +..-...+....++++++++...+++ ++|.+...+ + ....+.||+||||||
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~-g------~~~~~~~d~lVIATG 152 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKK-G------KEKIYSAERFLIATG 152 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccC-C------CceEEEeCEEEEecC
Confidence 0 0011 11111112344689999999988875 456654311 1 124799999999999
Q ss_pred CCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH
Q 010844 180 AEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (499)
Q Consensus 180 ~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~ 259 (499)
++|..|++||.++..+ +..+.. .....| ++++|||||++|+|+|..+++++
T Consensus 153 s~p~~p~ipG~~~~~~---~~~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 203 (484)
T TIGR01438 153 ERPRYPGIPGAKELCI---TSDDLF----------SLPYCP----------GKTLVVGASYVALECAGFLAGIG------ 203 (484)
T ss_pred CCCCCCCCCCccceee---cHHHhh----------cccccC----------CCEEEECCCHHHHHHHHHHHHhC------
Confidence 9999999999754322 222211 111223 38999999999999999999887
Q ss_pred hcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCC---cEEeeeEEEEcC
Q 010844 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDG---TEVPYGLLVWST 331 (499)
Q Consensus 260 ~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g---~~i~~D~vi~a~ 331 (499)
.+|+++++..+++.+++++.+.+++.|++.||+++++ .+.+++. + .++++++ +++++|.|+||+
T Consensus 204 --------~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~ 275 (484)
T TIGR01438 204 --------LDVTVMVRSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAI 275 (484)
T ss_pred --------CcEEEEEecccccccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEe
Confidence 8999999878889999999999999999999999998 6777753 2 3555555 379999999999
Q ss_pred CCCcch-h--cccCCCCCCC-CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 332 GVGPST-L--VKSLDLPKSP-GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 332 G~~p~~-~--~~~~~l~~~~-~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|++||. + ++..++++++ +|+|.||+++|| +.|+|||+|||+.. .+.+++.|.+||+.+|+||..
T Consensus 276 G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~GDv~~~--------~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 276 GRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVGDILED--------KQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred cCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEEEecCC--------CccchHHHHHHHHHHHHHHhc
Confidence 999995 3 4567787765 589999999999 99999999999941 256789999999999999863
No 31
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-34 Score=297.29 Aligned_cols=287 Identities=21% Similarity=0.361 Sum_probs=208.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc-ccccchhhhhc---------cCCCCCccccc-------hhhhc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-VFTPLLASTCV---------GTLEFRSVAEP-------IARIQ 124 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~-~~~~~~~~~~~---------g~~~~~~~~~~-------~~~~~ 124 (499)
++||||||||+||++||..|++.|++|+|||+++.. ..+-....... ...+...+... +....
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998642 22111000000 00111111111 11100
Q ss_pred cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHH
Q 010844 125 PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQ 204 (499)
Q Consensus 125 ~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~ 204 (499)
.......++.++.+++..+ +++.|.+...++ ..++.||+||||||+.|+.|++||+++... +.+..+..
T Consensus 83 ~~~~~~~gV~~~~g~~~~~--~~~~v~v~~~~~--------~~~~~~d~vViATGs~~~~p~i~G~~~~~~-v~~~~~~~ 151 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFV--SNKVIEVQAGDE--------KIELTAETIVINTGAVSNVLPIPGLADSKH-VYDSTGIQ 151 (438)
T ss_pred HHHHHhCCCEEEEEEEEEc--cCCEEEEeeCCC--------cEEEEcCEEEEeCCCCCCCCCCCCcCCCCc-EEchHHHh
Confidence 1122336788888887665 456777654111 247999999999999999999999743211 11112211
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCC
Q 010844 205 EIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD 283 (499)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~ 283 (499)
.+ ... .++|+|||||++|+|+|..+++.+ .+|+++++. .+++.++
T Consensus 152 ~~----------~~~----------~~~vvIIGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~l~~~~ 197 (438)
T PRK07251 152 SL----------ETL----------PERLGIIGGGNIGLEFAGLYNKLG--------------SKVTVLDAASTILPREE 197 (438)
T ss_pred cc----------hhc----------CCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCccCCCCC
Confidence 11 111 248999999999999999998876 899999997 6888889
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEE-ECCCcEEeeeEEEEcCCCCcch-h--cccCCCCCCCCCceeeCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLI-LNDGTEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDE 356 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~-~~~g~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~ 356 (499)
+++.+.+.+.|++.||+++++ +|.+++.+ .+. ..+++++++|.+|+|+|.+|+. . ++..++..+++|++.||+
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~ 277 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDD 277 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECC
Confidence 999999999999999999998 88888753 333 3467789999999999999983 2 334566677889999999
Q ss_pred CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 357 ~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++|| +.|||||+|||+. . ++..+.|..+|+.++.++.
T Consensus 278 ~~~t-~~~~IyaiGD~~~------~---~~~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 278 YCQT-SVPGVFAVGDVNG------G---PQFTYISLDDFRIVFGYLT 314 (438)
T ss_pred Cccc-CCCCEEEeeecCC------C---cccHhHHHHHHHHHHHHHc
Confidence 9999 9999999999994 2 6788999999999988765
No 32
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.2e-34 Score=299.61 Aligned_cols=282 Identities=22% Similarity=0.259 Sum_probs=208.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h-----------hhhc----cC------CCCCccc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A-----------STCV----GT------LEFRSVA 117 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~-----------~~~~----g~------~~~~~~~ 117 (499)
++|+||||||||+++|..|++.|.+|+|||+++ +..+.+. + .... |. .+...+.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 489999999999999999999999999999864 3322110 0 0000 00 0011000
Q ss_pred cchhhh--------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCC
Q 010844 118 EPIARI--------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHG 189 (499)
Q Consensus 118 ~~~~~~--------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG 189 (499)
...+++ ...+....+++++.+++..+| .+.|.+.+ + ...+.||+||||||+.|..|++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~---g-------~~~~~~~~lIiATGs~p~~p~i~G 147 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDL---G-------REVRGAKRFLIATGARPAIPPIPG 147 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcC---C-------eEEEEeCEEEEcCCCCCCCCCCCC
Confidence 001111 111223357889999887765 46676643 1 136899999999999999999999
Q ss_pred ccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE
Q 010844 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (499)
.++.. +.+..+... ... ..++++|||+|++|+|+|..|..++ .+
T Consensus 148 ~~~~~--~~~~~~~~~----------~~~----------~~~~vvIIGgG~~g~E~A~~l~~~g--------------~~ 191 (463)
T TIGR02053 148 LKEAG--YLTSEEALA----------LDR----------IPESLAVIGGGAIGVELAQAFARLG--------------SE 191 (463)
T ss_pred cccCc--eECchhhhC----------ccc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------Cc
Confidence 75432 112222111 111 1249999999999999999999877 89
Q ss_pred EEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEEC---CCcEEeeeEEEEcCCCCcch--h
Q 010844 270 VTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILN---DGTEVPYGLLVWSTGVGPST--L 338 (499)
Q Consensus 270 Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~---~g~~i~~D~vi~a~G~~p~~--~ 338 (499)
|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.+. +++++++|.||+|+|.+|+. +
T Consensus 192 Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l 271 (463)
T TIGR02053 192 VTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGL 271 (463)
T ss_pred EEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCC
Confidence 9999987 7889999999999999999999999999 79888643 23333 23689999999999999994 3
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..+++++++|+|.||++||| +.|||||+|||+. . +++++.|..||+++|.||.
T Consensus 272 ~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~------~---~~~~~~A~~~g~~aa~ni~ 327 (463)
T TIGR02053 272 GLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTG------G---LQLEYVAAKEGVVAAENAL 327 (463)
T ss_pred CccccCCEECCCCcEeECCCccC-CCCCEEEeeecCC------C---cccHhHHHHHHHHHHHHhc
Confidence 5667888888999999999999 9999999999995 1 6789999999999999986
No 33
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=1e-34 Score=313.52 Aligned_cols=364 Identities=15% Similarity=0.123 Sum_probs=234.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010844 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+--++|+|.|+|+..|.|...+.| ..|..+++|..+..-.... +.. ..+......++|+|||||||||+||..|+
T Consensus 482 lp~icGrVC~h~Ce~~C~R~~~d~p-V~I~~Lkr~a~d~~~~~~~-~~~--~~~~~~~~~kkVaIIGGGPAGLSAA~~LA 557 (1012)
T TIGR03315 482 LPAITGTICDHQCQYKCTRLDYDES-VNIREMKKVAAEKGYDEYK-TRW--HKPQGKSSAHKVAVIGAGPAGLSAGYFLA 557 (1012)
T ss_pred hhhHhhCcCCcchHHHhcCCCCCCC-CcccHHHHHHHhhHHHhcC-ccC--CCCCCCCCCCcEEEECCCHHHHHHHHHHH
Confidence 5567899999999999999987755 7888888888765321100 000 01111234579999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010844 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+++........ ......+..+ .+......+. ..+++++.+.. ..+.++.
T Consensus 558 r~G~~VTV~Ek~~~lGG~l~~-~IP~~rlp~e----~l~~~ie~l~-~~GVe~~~g~~-------~d~~ve~-------- 616 (1012)
T TIGR03315 558 RAGHPVTVFEKKEKPGGVVKN-IIPEFRISAE----SIQKDIELVK-FHGVEFKYGCS-------PDLTVAE-------- 616 (1012)
T ss_pred HCCCeEEEEecccccCceeee-cccccCCCHH----HHHHHHHHHH-hcCcEEEEecc-------cceEhhh--------
Confidence 999999999998765433110 0110111111 1111111122 24677665421 1122222
Q ss_pred CCceeeeeCCeEEEcCCCCc-cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChH
Q 010844 163 EPWKFKISYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~ 241 (499)
.....||+||||||+.+ ..+++||..+.+ +..++ +...+.+ . .......++|+|||||++
T Consensus 617 ---l~~~gYDaVIIATGA~~~~~l~I~G~~~~v--~~ave----fL~~~~~----~------~~~~~~GK~VVVIGGGnv 677 (1012)
T TIGR03315 617 ---LKNQGYKYVILAIGAWKHGPLRLEGGGERV--LKSLE----FLRAFKE----G------PTINPLGKHVVVVGGGNT 677 (1012)
T ss_pred ---hhcccccEEEECCCCCCCCCCCcCCCCcce--eeHHH----HHHHhhc----c------ccccccCCeEEEECCCHH
Confidence 12457999999999984 455778753322 22222 2111110 0 001123579999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCeEEE-
Q 010844 242 GVEFSGELSDF-IMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQKLIL- 316 (499)
Q Consensus 242 gve~A~~l~~~-~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~v~~- 316 (499)
|+|+|..+.+. + ..+|+++++. ..+|...+++.+ . .+.||+++.. .+.+++++.+++
T Consensus 678 AmD~Ar~a~Rl~G-------------a~kVtLVyRr~~~~Mpa~~eEl~~----a-leeGVe~~~~~~p~~I~~g~l~v~ 739 (1012)
T TIGR03315 678 AMDAARAALRVPG-------------VEKVTVVYRRTKRYMPASREELEE----A-LEDGVDFKELLSPESFEDGTLTCE 739 (1012)
T ss_pred HHHHHHHHHHhCC-------------CceEEEEEccCccccccCHHHHHH----H-HHcCCEEEeCCceEEEECCeEEEE
Confidence 99999988764 3 1489999986 356665554433 2 2469999987 666666443322
Q ss_pred ----------------CCCc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC-CCCCCCCCeEEeccccccc
Q 010844 317 ----------------NDGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW-LRVPSVQDVFAVGDCSGYL 376 (499)
Q Consensus 317 ----------------~~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~-l~~~~~~~Ifa~GD~a~~~ 376 (499)
.+|+ +++||+||+|+|+.|+ .+++.++++++++|++.||++ ++| +.|+|||+|||+.
T Consensus 740 ~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~-- 816 (1012)
T TIGR03315 740 VMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGET-NITNVFVIGDANR-- 816 (1012)
T ss_pred EEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCcc-CCCCEEEEeCcCC--
Confidence 1233 6899999999999998 577788898899999999986 887 9999999999984
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCC-CCcCcCCCCCCceecccceEEEecC
Q 010844 377 ESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRA-NSAKDMELGDPFVYRHLGSMATIGR 438 (499)
Q Consensus 377 ~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~lG~ 438 (499)
| |.++..|+.||+.||.+|........... ..........+|.|...|.|...+.
T Consensus 817 ---G----P~tVv~AIaqGr~AA~nIl~~~~~~~~~~~~~~~~~~~~~~~~Y~~kG~la~~~~ 872 (1012)
T TIGR03315 817 ---G----PATIVEAIADGRKAANAILSREGLNSDVDKVFPINEEVRLAEVYQKKGILVIDDH 872 (1012)
T ss_pred ---C----ccHHHHHHHHHHHHHHHHhccccCCcccccccccccccccchhhccCcceeccCc
Confidence 2 77899999999999999976433111000 0000011125788999998876553
No 34
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.5e-34 Score=296.17 Aligned_cols=286 Identities=20% Similarity=0.296 Sum_probs=226.5
Q ss_pred HHHHhccCC--CCeEEEEcCCCCcccccc-hhhhhccCCCCC-c-cccchhhhccccccCCCeEEE-EEEEEEEECCCCE
Q 010844 76 RLMKGIDTS--LYDVVCVSPRNHMVFTPL-LASTCVGTLEFR-S-VAEPIARIQPAISREPGSYFF-LSHCAGIDTDNHV 149 (499)
Q Consensus 76 ~aA~~L~~~--g~~V~lie~~~~~~~~~~-~~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~~v~~id~~~~~ 149 (499)
+||.+|++. +++|||||+++++.|.|. ++.+..+..... + +....+.+ ....++.++ .++|+.+|++++.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~----~~~~gv~~~~~~~V~~id~~~~~ 76 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVF----IKKRGIDVKTNHEVIEVNDERQT 76 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHH----HHhcCCeEEecCEEEEEECCCCE
Confidence 367888764 578999999999999884 666665544321 1 22222222 123567765 5799999999999
Q ss_pred EEEeeecCccccCCCceeeee--CCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q 010844 150 VHCETVTDELRTLEPWKFKIS--YDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEE 226 (499)
Q Consensus 150 v~~~~~~~~~~~~~~~~~~i~--yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 226 (499)
+.+.+..++ ..+. ||+||||||+.|+.|++||++ +.++..+++.++..++..+..
T Consensus 77 v~~~~~~~~--------~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~-------------- 134 (427)
T TIGR03385 77 VVVRNNKTN--------ETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDK-------------- 134 (427)
T ss_pred EEEEECCCC--------CEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhh--------------
Confidence 988752211 2566 999999999999999999986 567778888888877766421
Q ss_pred HhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-Cc-CCCCCHHHHHHHHHHHHhCCCEEEeC
Q 010844 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI-LSSFDDRLRHYATTQLSKSGVRLVRG 304 (499)
Q Consensus 227 ~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~-l~~~~~~~~~~~~~~l~~~gV~v~~~ 304 (499)
...++|+|||||++|+|+|..|++.+ .+|+++++. .+ .+.+++++.+.+.+.|++.||+++.+
T Consensus 135 -~~~~~vvViGgG~~g~e~A~~l~~~g--------------~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 199 (427)
T TIGR03385 135 -NKVENVVIIGGGYIGIEMAEALRERG--------------KNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLN 199 (427)
T ss_pred -cCCCeEEEECCCHHHHHHHHHHHhCC--------------CcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeC
Confidence 12359999999999999999998876 789999987 45 46788999999999999999999998
Q ss_pred -ceEEEeCCe--EEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCC-
Q 010844 305 -IVKDVDSQK--LILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLEST- 379 (499)
Q Consensus 305 -~v~~v~~~~--v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~- 379 (499)
.|.+++.+. +.+.+|+++++|.+|+|+|.+|+ +++++++++++++|+|.||+++|| +.|+|||+|||+..+...
T Consensus 200 ~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~~~ 278 (427)
T TIGR03385 200 EEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNIIT 278 (427)
T ss_pred CEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeeccC
Confidence 899997654 36778899999999999999999 688888999888999999999998 899999999999865432
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHH
Q 010844 380 GKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 380 g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+.+..+++++.|.+||+++|+||.
T Consensus 279 ~~~~~~~~~~~A~~~g~~~a~ni~ 302 (427)
T TIGR03385 279 KKPAWVPLAWGANKMGRIAGENIA 302 (427)
T ss_pred CCceeeechHHHHHHHHHHHHHhc
Confidence 222345689999999999999985
No 35
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4e-34 Score=293.24 Aligned_cols=278 Identities=22% Similarity=0.284 Sum_probs=205.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc----cchhhh-----------h-----ccC------CCCCcc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT----PLLAST-----------C-----VGT------LEFRSV 116 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~----~~~~~~-----------~-----~g~------~~~~~~ 116 (499)
+||+|||||++|..+|..+ .|.+|+|||++. +... ...|.- . .|. .+...+
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDI 78 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHH
Confidence 6899999999999998764 599999999863 2111 111100 0 011 011111
Q ss_pred ccc----hhhhc----ccc-ccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010844 117 AEP----IARIQ----PAI-SREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 117 ~~~----~~~~~----~~~-~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
... +.++. ..+ .+..++.++.+++..+ +.++|++.+ + ..+.||+||||||++|..|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~--~~~~V~v~~---g--------~~~~~d~lViATGs~p~~p~i 145 (451)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFI--GPKTLRTGD---G--------EEITADQVVIAAGSRPVIPPV 145 (451)
T ss_pred HHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEe--cCCEEEECC---C--------CEEEeCEEEEcCCCCCCCCCC
Confidence 111 11110 111 2346788999988877 467787753 2 379999999999999999999
Q ss_pred CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010844 188 HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 188 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
||.+.. .+.+..++..+. .. .++++|||||++|+|+|..+.+++
T Consensus 146 ~g~~~~--~~~~~~~~~~l~----------~~----------~~~vvIIGgG~iG~E~A~~l~~~G-------------- 189 (451)
T PRK07846 146 IADSGV--RYHTSDTIMRLP----------EL----------PESLVIVGGGFIAAEFAHVFSALG-------------- 189 (451)
T ss_pred CCcCCc--cEEchHHHhhhh----------hc----------CCeEEEECCCHHHHHHHHHHHHcC--------------
Confidence 986432 223333433221 11 249999999999999999999877
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcch-h--
Q 010844 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPST-L-- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~-~-- 338 (499)
.+|+++++. ++++.+++++.+.+.+.+ +.||+++++ ++.+++.+ .+.+.+|+++++|.|++|+|.+|+. +
T Consensus 190 ~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~ 268 (451)
T PRK07846 190 VRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLD 268 (451)
T ss_pred CeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccC
Confidence 899999987 688889999988877655 568999998 88888643 3556788899999999999999994 4
Q ss_pred cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 ~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++.+++++++|+|.||+++|| +.|||||+|||+.. +++++.|.+||+++|+||.
T Consensus 269 ~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 269 AAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSP---------YQLKHVANHEARVVQHNLL 323 (451)
T ss_pred chhcCceECCCCcEeECCCccc-CCCCEEEEeecCCC---------ccChhHHHHHHHHHHHHHc
Confidence 3567888888999999999998 99999999999952 5678999999999999986
No 36
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=3.8e-34 Score=297.21 Aligned_cols=299 Identities=19% Similarity=0.285 Sum_probs=205.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chh-----h-----hhccC-----CCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLA-----S-----TCVGT-----LEFRS 115 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~-----~-----~~~g~-----~~~~~ 115 (499)
.++||+|||||+||++||..+++.|.+|+|||++. +... | ++. . ...|. .+...
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 45799999999999999999999999999999862 2221 0 000 0 00011 01111
Q ss_pred cc-------cchhhhccccccCCCeEEEEEEEEEEECCCCEEEEee----------ecCccccC-------CCceeeeeC
Q 010844 116 VA-------EPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCET----------VTDELRTL-------EPWKFKISY 171 (499)
Q Consensus 116 ~~-------~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~----------~~~~~~~~-------~~~~~~i~y 171 (499)
+. ..+.+....+.+..+++++.++..-++. ++|.+.. .+++.-.. ...+.++.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~--~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSE--NQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecC--CEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 10 0111111122334688999888765543 3332210 00000000 001247999
Q ss_pred CeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHH
Q 010844 172 DKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSD 251 (499)
Q Consensus 172 d~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~ 251 (499)
|+||||||+.|..|++||.+ +.+ +.++.. ... ..++|+|||||++|+|+|..+..
T Consensus 204 d~lVIATGS~P~~P~IpG~~-~v~---ts~~~~----------~l~-----------~pk~VvIIGgG~iGlE~A~~l~~ 258 (561)
T PTZ00058 204 KNILIAVGNKPIFPDVKGKE-FTI---SSDDFF----------KIK-----------EAKRIGIAGSGYIAVELINVVNR 258 (561)
T ss_pred CEEEEecCCCCCCCCCCCce-eEE---EHHHHh----------hcc-----------CCCEEEEECCcHHHHHHHHHHHH
Confidence 99999999999999999963 222 222211 111 13599999999999999999998
Q ss_pred HHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---eE--EECCC-cEEe
Q 010844 252 FIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KL--ILNDG-TEVP 323 (499)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~v--~~~~g-~~i~ 323 (499)
++ .+||++++. ++++.+++++.+.+.+.|++.||+++++ .|.+++++ ++ .+.++ ++++
T Consensus 259 ~G--------------~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~ 324 (561)
T PTZ00058 259 LG--------------AESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEH 324 (561)
T ss_pred cC--------------CcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEE
Confidence 87 899999987 6889999999999999999999999999 78888753 23 33344 5799
Q ss_pred eeEEEEcCCCCcch-hcc--cCCCCCCCCCceeeCCCCCCCCCCCeEEecccccccc-----------------------
Q 010844 324 YGLLVWSTGVGPST-LVK--SLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLE----------------------- 377 (499)
Q Consensus 324 ~D~vi~a~G~~p~~-~~~--~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~----------------------- 377 (499)
+|.|++|+|++|+. .+. ..++ .+++|+|.||+++|| +.|||||+|||+..+.
T Consensus 325 aD~VlvA~Gr~Pn~~~L~l~~~~~-~~~~G~I~VDe~lqT-s~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 402 (561)
T PTZ00058 325 FDYVIYCVGRSPNTEDLNLKALNI-KTPKGYIKVDDNQRT-SVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKE 402 (561)
T ss_pred CCEEEECcCCCCCccccCccccce-ecCCCeEEECcCCcc-CCCCEEEeEeccCcccccccccccccccccccccccccc
Confidence 99999999999994 332 2233 245799999999999 9999999999997321
Q ss_pred -CCCCCC-CCchHHHHHHHHHHHHHHHH
Q 010844 378 -STGKTV-LPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 378 -~~g~~~-~p~~~~~A~~~g~~aa~~i~ 403 (499)
..+... .++++..|..||+++|.||.
T Consensus 403 ~~~~~~~~~~~la~~A~~~g~~aa~ni~ 430 (561)
T PTZ00058 403 NTSGESYYNVQLTPVAINAGRLLADRLF 430 (561)
T ss_pred ccccccccCcCchHHHHHHHHHHHHHHh
Confidence 122222 37889999999999999985
No 37
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=1.7e-34 Score=282.28 Aligned_cols=278 Identities=21% Similarity=0.228 Sum_probs=199.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhh---hccC---CCCCccccchhhhccccccCCCeEEE
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAST---CVGT---LEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~---~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
++|+|||||+||+++|..|++.|++|+|||+++. ......... ..+. ....++...+.+. +. ..++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~-~~gv~~~ 75 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQ---AV-KFGAEII 75 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHH---HH-HcCCeEE
Confidence 4799999999999999999999999999998762 111000000 0111 1112222333332 22 2467777
Q ss_pred EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHH
Q 010844 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~ 213 (499)
.++|+.++++++.+.+...+ + ..+.||+||+|||+.++.|++||.++. ........+
T Consensus 76 ~~~v~~v~~~~~~~~v~~~~-~--------~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~----------- 135 (300)
T TIGR01292 76 YEEVIKVDLSDRPFKVKTGD-G--------KEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD----------- 135 (300)
T ss_pred EEEEEEEEecCCeeEEEeCC-C--------CEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC-----------
Confidence 79999999887766554311 1 379999999999999998899986431 111100000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010844 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
....+.++|+|||+|++|+|+|.+|.+.+ .+|+++++.+.+. ....+.+.
T Consensus 136 -----------~~~~~~~~v~ViG~G~~~~e~a~~l~~~~--------------~~V~~v~~~~~~~-----~~~~~~~~ 185 (300)
T TIGR01292 136 -----------GPFFKNKEVAVVGGGDSAIEEALYLTRIA--------------KKVTLVHRRDKFR-----AEKILLDR 185 (300)
T ss_pred -----------hhhcCCCEEEEECCChHHHHHHHHHHhhc--------------CEEEEEEeCcccC-----cCHHHHHH
Confidence 00123359999999999999999998776 8999999874322 12345566
Q ss_pred HHhC-CCEEEeC-ceEEEeCCe----EEEC---CC--cEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCC
Q 010844 294 LSKS-GVRLVRG-IVKDVDSQK----LILN---DG--TEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVP 361 (499)
Q Consensus 294 l~~~-gV~v~~~-~v~~v~~~~----v~~~---~g--~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~ 361 (499)
+++. ||+++.+ .+.+++.+. +++. ++ +++++|++|||+|++|+. ++..+ +..+++|++.||+++++
T Consensus 186 l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t- 263 (300)
T TIGR01292 186 LRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRT- 263 (300)
T ss_pred HHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCcc-
Confidence 7777 9999988 899987652 4443 23 579999999999999984 66666 66788899999999998
Q ss_pred CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010844 362 SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 362 ~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
++||||++|||+.. .++++..|+.||+.||.+|.+.
T Consensus 264 ~~~~vya~GD~~~~--------~~~~~~~A~~~g~~aa~~i~~~ 299 (300)
T TIGR01292 264 SVPGVFAAGDVRDK--------GYRQAVTAAGDGCIAALSAERY 299 (300)
T ss_pred CCCCEEEeecccCc--------chhhhhhhhhhHHHHHHHHHhh
Confidence 99999999999952 2677899999999999998764
No 38
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=8.4e-34 Score=293.96 Aligned_cols=285 Identities=21% Similarity=0.264 Sum_probs=207.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC--------Ccccc-------cc---hhh-----------hhccC--
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN--------HMVFT-------PL---LAS-----------TCVGT-- 110 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~--------~~~~~-------~~---~~~-----------~~~g~-- 110 (499)
++||+||||||||++||..|++.|.+|+|||+.+ .+..+ |. +.. ...|.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~ 84 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT 84 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence 4799999999999999999999999999999631 12211 10 000 00011
Q ss_pred ---CCCCccccchhhhc-------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010844 111 ---LEFRSVAEPIARIQ-------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 111 ---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
.+...+........ .......++.++++++...+ .+.|.+.+.. +...+.||+||||||+
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~--------~~~~i~~d~lIIATGs 154 (499)
T PTZ00052 85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNS--------QEETITAKYILIATGG 154 (499)
T ss_pred CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCC--------CceEEECCEEEEecCC
Confidence 11111111111111 01112257788888877653 4567665311 1247999999999999
Q ss_pred CccCC-CCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH
Q 010844 181 EASTF-GIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ 259 (499)
Q Consensus 181 ~~~~~-~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~ 259 (499)
.|..| .+||.++..+ +..+... ....| ++++|||||++|+|+|..|+.++
T Consensus 155 ~p~~p~~i~G~~~~~~---~~~~~~~----------~~~~~----------~~vvIIGgG~iG~E~A~~l~~~G------ 205 (499)
T PTZ00052 155 RPSIPEDVPGAKEYSI---TSDDIFS----------LSKDP----------GKTLIVGASYIGLETAGFLNELG------ 205 (499)
T ss_pred CCCCCCCCCCccceee---cHHHHhh----------hhcCC----------CeEEEECCCHHHHHHHHHHHHcC------
Confidence 99987 4898754322 2222211 11122 48999999999999999999887
Q ss_pred hcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCC
Q 010844 260 RYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 260 ~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
.+||++++..+++.+++++.+.+.+.|++.||+++.+ .+.+++. + .+.+.+|+++++|.|+|++|.+
T Consensus 206 --------~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 206 --------FDVTVAVRSIPLRGFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRK 277 (499)
T ss_pred --------CcEEEEEcCcccccCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCC
Confidence 8999999877788999999999999999999999998 7777753 2 3566788899999999999999
Q ss_pred cch-hc--ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 335 PST-LV--KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 335 p~~-~~--~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
||. ++ +.++++++++|++.+++. || +.|+|||+|||+. + .+.+++.|.+||+.+|+||.
T Consensus 278 pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~-----~---~~~l~~~A~~~g~~aa~ni~ 339 (499)
T PTZ00052 278 PDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE-----G---RPELTPVAIKAGILLARRLF 339 (499)
T ss_pred CCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC-----C---CcccHHHHHHHHHHHHHHHh
Confidence 994 43 567888888898777777 88 9999999999994 1 26789999999999999985
No 39
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=4e-34 Score=295.51 Aligned_cols=282 Identities=23% Similarity=0.321 Sum_probs=202.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---ch-----hhhhc-----cCCCCCccccchh
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LL-----ASTCV-----GTLEFRSVAEPIA 121 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~-----~~~~~-----g~~~~~~~~~~~~ 121 (499)
++||+|||||+||++||..|++.|.+|+|||++. +... | ++ ..... .... .....++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY-WGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-GEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC-CCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-cCcccCHH
Confidence 4799999999999999999999999999999862 1111 1 11 00000 0000 00111111
Q ss_pred hhc--------------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC
Q 010844 122 RIQ--------------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI 187 (499)
Q Consensus 122 ~~~--------------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i 187 (499)
.+. ..+....++..+.++...++ .+.+.+...+ + +..++.||+||||||+.|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~~v~v~~~~-g------~~~~~~~d~lViATGs~p~~~-- 150 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLND-G------GTETVTFDNAIIATGSSTRLL-- 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CCEEEEEecC-C------CeeEEEcCEEEEeCCCCCCCC--
Confidence 100 01111246667766655543 4566655321 1 124799999999999998764
Q ss_pred CCcc--ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010844 188 HGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 188 pG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
||.+ +..+ +..+. +.....| ++++|||||++|+|+|..+++++
T Consensus 151 pg~~~~~~v~---~~~~~----------~~~~~~~----------~~vvVIGgG~ig~E~A~~l~~~G------------ 195 (466)
T PRK07818 151 PGTSLSENVV---TYEEQ----------ILSRELP----------KSIVIAGAGAIGMEFAYVLKNYG------------ 195 (466)
T ss_pred CCCCCCCcEE---chHHH----------hccccCC----------CeEEEECCcHHHHHHHHHHHHcC------------
Confidence 6643 2222 22111 1111122 49999999999999999999877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEEC--CC--cEEeeeEEEEcCCCCc
Q 010844 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~--~g--~~i~~D~vi~a~G~~p 335 (499)
.+|+++++. +++|.+++++.+.+.+.|+++||+++++ +|++++++ . +.+. +| +++++|.||+|+|.+|
T Consensus 196 --~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 196 --VDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred --CeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence 899999986 7899999999999999999999999999 89888653 2 3443 56 4799999999999999
Q ss_pred ch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 336 ST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 336 ~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+. . +++.+++++++|+|.||+++|| +.|+|||+|||+. . +++++.|.+||++||.||.
T Consensus 274 n~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~------~---~~l~~~A~~~g~~aa~~i~ 334 (466)
T PRK07818 274 RVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTA------K---LQLAHVAEAQGVVAAETIA 334 (466)
T ss_pred CCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCC------C---cccHhHHHHHHHHHHHHHc
Confidence 94 2 5677888888899999999999 9999999999994 1 6789999999999999986
No 40
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=3.9e-34 Score=276.93 Aligned_cols=295 Identities=22% Similarity=0.359 Sum_probs=237.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCccccc-chhhhhccCCCCCccccchhhhccccccCCCeEEEE-
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVFTP-LLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL- 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (499)
.++++|||||++|..|+..+++.++ +++|+-++.+++|.+ .++....-. ...++...+.+.+..+++++.
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~------~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTV------GEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeec------cccccccChhhHhhcCceEEEc
Confidence 5789999999999999999999875 599999898888874 232221111 111222222233446777655
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
+.|+.+|.+.+++.+.+ .+.++|++|+||||+.++++++||.+ ++...+++++++..+...+.
T Consensus 148 t~v~~~D~~~K~l~~~~-----------Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~----- 211 (478)
T KOG1336|consen 148 TSVVKADLASKTLVLGN-----------GETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQ----- 211 (478)
T ss_pred ceeEEeeccccEEEeCC-----------CceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhc-----
Confidence 59999999999999887 35899999999999999999999986 77888999999988766542
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHH
Q 010844 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQL 294 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l 294 (499)
...+|+|+|+|..|+|+|.+|.... .+||+|++. ..++ .+.+.+.+.+++++
T Consensus 212 ------------~~~~vV~vG~G~ig~Evaa~l~~~~--------------~~VT~V~~e~~~~~~lf~~~i~~~~~~y~ 265 (478)
T KOG1336|consen 212 ------------LGGKVVCVGGGFIGMEVAAALVSKA--------------KSVTVVFPEPWLLPRLFGPSIGQFYEDYY 265 (478)
T ss_pred ------------cCceEEEECchHHHHHHHHHHHhcC--------------ceEEEEccCccchhhhhhHHHHHHHHHHH
Confidence 2348999999999999999998765 899999997 5666 68899999999999
Q ss_pred HhCCCEEEeC-ceEEEeCC------eEEECCCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCCCCCCCCCCe
Q 010844 295 SKSGVRLVRG-IVKDVDSQ------KLILNDGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~------~v~~~~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
++.||+++.+ .+.+++.+ .|.+.||++++||+||+.+|.+|++ +++. +..++++|.|.||+.+|| +.|||
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t-~~~~V 343 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQT-SVPNV 343 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceee-ccCCc
Confidence 9999999999 78888664 4788999999999999999999994 6665 777889999999999999 89999
Q ss_pred EEeccccccccCCC-CCCCCchHHHHHHHHHHHHHHHHHHH
Q 010844 367 FAVGDCSGYLESTG-KTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 367 fa~GD~a~~~~~~g-~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
||+||++.++-+.. .......++.|..+|+.+...|....
T Consensus 344 yAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~ 384 (478)
T KOG1336|consen 344 YAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAP 384 (478)
T ss_pred ccccceeecccccccccccchHHHHHHHHHHhhhhhhhccC
Confidence 99999999875421 12225778899999998888776543
No 41
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=8.1e-35 Score=299.75 Aligned_cols=335 Identities=18% Similarity=0.150 Sum_probs=222.0
Q ss_pred cccccccccccc--cccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010844 3 LFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-++|+|.|+ |+..|.+.....| ..++.+.++......... ... +.......++|+|||||+|||++|..
T Consensus 85 ~~~~~g~vc~~~~~C~~~C~~~~~~~~-v~i~~l~~~~~~~~~~~~---~~~--~~~~~~~~~~VvIIGgGpaGl~aA~~ 158 (457)
T PRK11749 85 LPAVCGRVCPQERLCEGACVRGKKGEP-VAIGRLERYITDWAMETG---WVL--FKRAPKTGKKVAVIGAGPAGLTAAHR 158 (457)
T ss_pred chhhhcCcCCCccCHHHHhcCCCCCCC-cchHHHHHHHHHHHHhcC---CCC--CCCCccCCCcEEEECCCHHHHHHHHH
Confidence 556789999999 9999998877665 466666666544321100 000 01112345799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010844 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|||+++.+..... .... ......++. ......+.. .++.+..++... +.+.++.
T Consensus 159 l~~~g~~V~lie~~~~~gG~l~-~gip-~~~~~~~~~---~~~~~~l~~-~gv~~~~~~~v~-----~~v~~~~------ 221 (457)
T PRK11749 159 LARKGYDVTIFEARDKAGGLLR-YGIP-EFRLPKDIV---DREVERLLK-LGVEIRTNTEVG-----RDITLDE------ 221 (457)
T ss_pred HHhCCCeEEEEccCCCCCcEee-ccCC-CccCCHHHH---HHHHHHHHH-cCCEEEeCCEEC-----CccCHHH------
Confidence 9999999999999876532211 0010 000111111 111122222 467776655431 1222221
Q ss_pred cCCCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010844 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
..+.||+||+|||+. +..+++||.+.. .+.++..+..... ... ...+....++|+|||||
T Consensus 222 ------~~~~~d~vvlAtGa~~~~~~~i~G~~~~-----gv~~~~~~l~~~~----~~~----~~~~~~~g~~VvViGgG 282 (457)
T PRK11749 222 ------LRAGYDAVFIGTGAGLPRFLGIPGENLG-----GVYSAVDFLTRVN----QAV----ADYDLPVGKRVVVIGGG 282 (457)
T ss_pred ------HHhhCCEEEEccCCCCCCCCCCCCccCC-----CcEEHHHHHHHHh----hcc----ccccCCCCCeEEEECCC
Confidence 136799999999986 777788986421 1112222211111 000 00011234699999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe---
Q 010844 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK--- 313 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~--- 313 (499)
++|+|+|..+.+.+. .+|+++++. . .++.... ..+.+++.||+++++ .+.++.++.
T Consensus 283 ~~g~e~A~~l~~~G~-------------~~Vtlv~~~~~~~~~~~~~-----~~~~~~~~GV~i~~~~~v~~i~~~~~~~ 344 (457)
T PRK11749 283 NTAMDAARTAKRLGA-------------ESVTIVYRRGREEMPASEE-----EVEHAKEEGVEFEWLAAPVEILGDEGRV 344 (457)
T ss_pred HHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHH-----HHHHHHHCCCEEEecCCcEEEEecCCce
Confidence 999999999987761 389999985 2 4444322 345678899999998 788886542
Q ss_pred --EEEC-------------------CCcEEeeeEEEEcCCCCcch-hcc-cCCCCCCCCCceeeCC-CCCCCCCCCeEEe
Q 010844 314 --LILN-------------------DGTEVPYGLLVWSTGVGPST-LVK-SLDLPKSPGGRIGIDE-WLRVPSVQDVFAV 369 (499)
Q Consensus 314 --v~~~-------------------~g~~i~~D~vi~a~G~~p~~-~~~-~~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~ 369 (499)
|++. +++++++|.||+++|++|+. ++. ..+++++++|+|.||+ +++| +.|+|||+
T Consensus 345 ~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~ 423 (457)
T PRK11749 345 TGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRT-SLPGVFAG 423 (457)
T ss_pred EEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCcc-CCCCEEEe
Confidence 5542 23479999999999999994 433 4578888899999998 7888 99999999
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 370 GDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 370 GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|||+. + ++++..|++||+.+|.+|.+.+.
T Consensus 424 GD~~~-----~----~~~~~~A~~~G~~aA~~I~~~l~ 452 (457)
T PRK11749 424 GDIVT-----G----AATVVWAVGDGKDAAEAIHEYLE 452 (457)
T ss_pred CCcCC-----C----chHHHHHHHHHHHHHHHHHHHHh
Confidence 99994 1 57899999999999999999886
No 42
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=7.3e-34 Score=292.97 Aligned_cols=284 Identities=22% Similarity=0.288 Sum_probs=199.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----------h-----hhhhcc----C--CCCCccccch
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------L-----ASTCVG----T--LEFRSVAEPI 120 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----------~-----~~~~~g----~--~~~~~~~~~~ 120 (499)
++||+||||||||++||..+++.|.+|+|||++..+..+-+ + .....+ . +.. ....++
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~-~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-cCccCH
Confidence 47999999999999999999999999999997543333210 0 000000 0 000 000111
Q ss_pred hh--------------hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 121 AR--------------IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 121 ~~--------------~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
.+ -...+.+..++.++.++. .++. .+.+.+...+ + +..++.||+||||||++|. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~-~~~v~v~~~~-g------~~~~~~~d~lVIATGs~p~--~ 150 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDG-VGKVVVKAED-G------SETQLEAKDIVIATGSEPT--P 150 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-CCEEEEEcCC-C------ceEEEEeCEEEEeCCCCCC--C
Confidence 11 111122335688888875 3333 3345443211 1 1247999999999999884 4
Q ss_pred CCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010844 187 IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+||+. +....+ +..++. ..... .++|+|||||++|+|+|..+.+++
T Consensus 151 ipg~~~~~~~~~-~~~~~~----------~~~~~----------~~~vvIIGgG~ig~E~A~~l~~~G------------ 197 (466)
T PRK06115 151 LPGVTIDNQRII-DSTGAL----------SLPEV----------PKHLVVIGAGVIGLELGSVWRRLG------------ 197 (466)
T ss_pred CCCCCCCCCeEE-CHHHHh----------CCccC----------CCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 67753 222112 211111 11112 359999999999999999998877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EEC---C--CcEEeeeEEEEcCCCC
Q 010844 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILN---D--GTEVPYGLLVWSTGVG 334 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v--~~~---~--g~~i~~D~vi~a~G~~ 334 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.++++ +++ .+. + ++++++|.|++++|.+
T Consensus 198 --~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 198 --AQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred --CeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 899999986 7889999999999999999999999999 8988874 233 232 2 3579999999999999
Q ss_pred cch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 335 PST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 335 p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
|+. . ++..+++.+++| +.||+++|| +.|+|||+|||+. . |++++.|.+||+++|+||.
T Consensus 276 pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~------~---~~la~~A~~~g~~aa~~i~ 336 (466)
T PRK06115 276 PYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTS------G---PMLAHKAEDEAVACIERIA 336 (466)
T ss_pred cccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 994 2 345567777777 778999999 9999999999994 1 6789999999999999986
No 43
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.3e-33 Score=292.10 Aligned_cols=285 Identities=21% Similarity=0.279 Sum_probs=208.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----h---------------hhhccCCCCCccccchhhh
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----A---------------STCVGTLEFRSVAEPIARI 123 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~---------------~~~~g~~~~~~~~~~~~~~ 123 (499)
+||+|||||+||+++|..|++.|++|+|||+ +.+..+... + ......+.......++..+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKM 80 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHH
Confidence 7899999999999999999999999999998 444322100 0 0000011111111111111
Q ss_pred --------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC-
Q 010844 124 --------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH- 188 (499)
Q Consensus 124 --------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip- 188 (499)
...+....+++++.+++..++. +.+.+...+ + ..++.||+||||||+.|+.|++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~-g-------~~~~~~d~lVlAtG~~p~~~~~~~ 150 (461)
T TIGR01350 81 QKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDP--GTVLVTGEN-G-------EETLTAKNIIIATGSRPRSLPGPF 150 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEEecCC-C-------cEEEEeCEEEEcCCCCCCCCCCCC
Confidence 0112233578899998887764 445554311 1 14799999999999999888776
Q ss_pred CccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCce
Q 010844 189 GVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYI 268 (499)
Q Consensus 189 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~ 268 (499)
+.... .+.+..+...+ .. ..++|+|||||++|+|+|..+.+.+ .
T Consensus 151 ~~~~~--~~~~~~~~~~~----------~~----------~~~~vvViGgG~~g~e~A~~l~~~g--------------~ 194 (461)
T TIGR01350 151 DFDGE--VVITSTGALNL----------KE----------VPESLVIIGGGVIGIEFASIFASLG--------------S 194 (461)
T ss_pred CCCCc--eEEcchHHhcc----------cc----------CCCeEEEECCCHHHHHHHHHHHHcC--------------C
Confidence 33211 12222332211 11 2248999999999999999998876 8
Q ss_pred EEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEE--ECCC--cEEeeeEEEEcCCCCcch---
Q 010844 269 HVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDG--TEVPYGLLVWSTGVGPST--- 337 (499)
Q Consensus 269 ~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~--~~~g--~~i~~D~vi~a~G~~p~~--- 337 (499)
+|+++++. .+++.+++++.+.+.+.|++.||+++.+ +|.+++. +++. +.+| +++++|.+|+|+|.+|+.
T Consensus 195 ~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l 274 (461)
T TIGR01350 195 KVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGL 274 (461)
T ss_pred cEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCC
Confidence 99999987 6889999999999999999999999999 8888763 4443 4456 579999999999999994
Q ss_pred hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 338 LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+++..++.++++|+|.||+++|+ +.|+|||+|||+. . +++++.|.+||+.+|+||..
T Consensus 275 ~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~------~---~~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 275 GLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIG------G---PMLAHVASHEGIVAAENIAG 331 (461)
T ss_pred CcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHcC
Confidence 36777888888999999999999 8999999999994 1 67899999999999999863
No 44
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-33 Score=291.40 Aligned_cols=282 Identities=25% Similarity=0.312 Sum_probs=203.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----------hh------h---hh-cc------CCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----------LA------S---TC-VG------TLEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----------~~------~---~~-~g------~~~~~ 114 (499)
.+++|||||||+||+++|..|++.|.+|+|||++ .+..... +. . .. .| ..+..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 3589999999999999999999999999999994 3332211 00 0 00 01 01111
Q ss_pred ccccchhhhc--------cccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 115 SVAEPIARIQ--------PAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 115 ~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
.+....+... .......++.++.+++..++. +.+.+.. .++.||+||||||+. .|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v~~------------~~~~~d~lIiATGs~--~p~ 144 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEVNG------------ERIEAKNIVIATGSR--VPP 144 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEECc------------EEEEeCEEEEeCCCC--CCC
Confidence 1111111111 111233567888888776654 4555421 479999999999998 566
Q ss_pred CCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010844 187 IHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVK 265 (499)
Q Consensus 187 ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~ 265 (499)
+||... ....+.+..+...+ . ...++++|||+|++|+|+|..|.+++
T Consensus 145 ipg~~~~~~~~~~~~~~~~~~----------~----------~~~k~v~VIGgG~~g~E~A~~l~~~g------------ 192 (460)
T PRK06292 145 IPGVWLILGDRLLTSDDAFEL----------D----------KLPKSLAVIGGGVIGLELGQALSRLG------------ 192 (460)
T ss_pred CCCCcccCCCcEECchHHhCc----------c----------ccCCeEEEECCCHHHHHHHHHHHHcC------------
Confidence 777632 11111122222211 1 12259999999999999999999877
Q ss_pred CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---eEEE--CCC--cEEeeeEEEEcCCCCcc
Q 010844 266 DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---KLIL--NDG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 266 ~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~v~~--~~g--~~i~~D~vi~a~G~~p~ 336 (499)
.+|+++++. ++++.+++++.+.+++.|++. |+++++ +|.+++.+ .+++ .++ +++++|.|++++|.+|+
T Consensus 193 --~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 193 --VKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred --CcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 899999987 688889999999999999999 999998 88888643 3553 233 57999999999999999
Q ss_pred h---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 337 T---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 337 ~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
. .++.++++++++|+|.||+++|| +.|||||+|||+.. ++++..|..||+++|.||..
T Consensus 270 ~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~---------~~~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 270 TDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGK---------PPLLHEAADEGRIAAENAAG 330 (460)
T ss_pred CCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCC---------ccchhHHHHHHHHHHHHhcC
Confidence 4 25667888888999999999999 99999999999952 56789999999999999864
No 45
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-33 Score=291.96 Aligned_cols=288 Identities=26% Similarity=0.352 Sum_probs=203.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccch----hh-----------h-----hccC------CCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLL----AS-----------T-----CVGT------LEFR 114 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~----~~-----------~-----~~g~------~~~~ 114 (499)
..+||+|||||+||++||..|++.|.+|+|||++ .+..+-.. +. . ..|. .+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 3589999999999999999999999999999986 33222100 00 0 0010 0000
Q ss_pred cccc-------chhhhccccccCCCeEEEEEEEEEEECC-----CCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc
Q 010844 115 SVAE-------PIARIQPAISREPGSYFFLSHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA 182 (499)
Q Consensus 115 ~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~ 182 (499)
.+.. .+......+....++++++++++.+|.. .+.+.+...+ + +..++.||+||||||+.|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~-g------~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETET-G------ENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCC-C------ceEEEEcCEEEEeCCCCC
Confidence 1100 0111111223346899999999999876 3355554311 1 124799999999999998
Q ss_pred cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcC
Q 010844 183 STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYS 262 (499)
Q Consensus 183 ~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~ 262 (499)
..+ ||.......+.+..++..+ ...| ++++|||||++|+|+|..|++++
T Consensus 155 ~~~--p~~~~~~~~~~~~~~~~~~----------~~~~----------~~vvIIGgG~~G~E~A~~l~~~g--------- 203 (472)
T PRK05976 155 VEL--PGLPFDGEYVISSDEALSL----------ETLP----------KSLVIVGGGVIGLEWASMLADFG--------- 203 (472)
T ss_pred CCC--CCCCCCCceEEcchHhhCc----------cccC----------CEEEEECCCHHHHHHHHHHHHcC---------
Confidence 654 3332111111122222211 1122 49999999999999999999876
Q ss_pred CCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe---CCeE---EECCC--cEEeeeEEEEcCC
Q 010844 263 HVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD---SQKL---ILNDG--TEVPYGLLVWSTG 332 (499)
Q Consensus 263 ~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~---~~~v---~~~~g--~~i~~D~vi~a~G 332 (499)
.+|+++++. +++|.+++++.+.+.+.|++.||+++++ +|.+++ ++++ .+.+| +++++|.+|+|+|
T Consensus 204 -----~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G 278 (472)
T PRK05976 204 -----VEVTVVEAADRILPTEDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVG 278 (472)
T ss_pred -----CeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeC
Confidence 899999987 6889999999999999999999999999 898886 3433 23456 3699999999999
Q ss_pred CCcch-h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 333 VGPST-L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 333 ~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
.+|+. . ++..++.. .+|+|.||+++|+ +.|+|||+|||+. . +++++.|.+||+.+|.||.
T Consensus 279 ~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAiGD~~~------~---~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 279 RRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAIGDVIG------E---PQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred CccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEeeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 99984 2 23445544 4688999999999 8999999999984 2 6789999999999999975
No 46
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=8.6e-34 Score=279.50 Aligned_cols=289 Identities=20% Similarity=0.189 Sum_probs=202.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC---cccccchhhhhccC---CCCCccccchhhhccccccCCCe
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---MVFTPLLASTCVGT---LEFRSVAEPIARIQPAISREPGS 133 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~---~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~ 133 (499)
.+.++|+|||||||||+||..|++.|+++++||.... +.+.+..+.+. +. +....+...+... ....+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~ 78 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWP-GDPNDLTGPLLMERMHEH----ATKFET 78 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCC-CCCCCCCHHHHHHHHHHH----HHHCCC
Confidence 4568999999999999999999999999999985421 11111111111 11 1111111122222 222334
Q ss_pred EEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHH
Q 010844 134 YFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 134 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~ 213 (499)
.+..++|+.|+...+.+++... . ..+.||+||+|||+.|+.|++||.+.+. .+.+........
T Consensus 79 ~~~~~~v~~v~~~~~~~~v~~~--~--------~~~~~d~vilAtG~~~~~~~i~g~~~~~--~~~v~~~~~~~~----- 141 (321)
T PRK10262 79 EIIFDHINKVDLQNRPFRLTGD--S--------GEYTCDALIIATGASARYLGLPSEEAFK--GRGVSACATCDG----- 141 (321)
T ss_pred EEEeeEEEEEEecCCeEEEEec--C--------CEEEECEEEECCCCCCCCCCCCCHHHcC--CCcEEEeecCCH-----
Confidence 5666788889888877766541 1 2689999999999999999999964311 111110000000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010844 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
.....++|+|||+|++|+|+|..|++.+ .+|+++++...++ .++.+.+.+.+.
T Consensus 142 ------------~~~~g~~vvVvGgG~~g~e~A~~l~~~~--------------~~Vtlv~~~~~~~-~~~~~~~~~~~~ 194 (321)
T PRK10262 142 ------------FFYRNQKVAVIGGGNTAVEEALYLSNIA--------------SEVHLIHRRDGFR-AEKILIKRLMDK 194 (321)
T ss_pred ------------HHcCCCEEEEECCCHHHHHHHHHHHhhC--------------CEEEEEEECCccC-CCHHHHHHHHhh
Confidence 0123469999999999999999999877 8999999874332 346678888899
Q ss_pred HHhCCCEEEeC-ceEEEeCC-----eEEECCC------cEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCC-----
Q 010844 294 LSKSGVRLVRG-IVKDVDSQ-----KLILNDG------TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE----- 356 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~-----~v~~~~g------~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~----- 356 (499)
|++.||+++++ .+.+++++ .|++.++ +++++|.|||++|.+|+..+...++.+ ++|+|.||+
T Consensus 195 l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~-~~g~i~vd~~~~~~ 273 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGN 273 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccc-cCCEEEECCCCccc
Confidence 99999999998 89999775 3666432 479999999999999995433335655 458899997
Q ss_pred CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 357 WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 357 ~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+++| +.|+|||+|||+.. ..++...|+.+|..||..|.+.+.
T Consensus 274 ~~~t-~~~~VyA~GD~~~~--------~~~~~~~A~~~g~~Aa~~~~~~l~ 315 (321)
T PRK10262 274 ATQT-SIPGVFAAGDVMDH--------IYRQAITSAGTGCMAALDAERYLD 315 (321)
T ss_pred cccc-CCCCEEECeeccCC--------CcceEEEEehhHHHHHHHHHHHHH
Confidence 6787 99999999999952 144556699999999999999886
No 47
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=4.1e-34 Score=294.96 Aligned_cols=343 Identities=19% Similarity=0.201 Sum_probs=223.0
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010844 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+.-++|+|.|+|+..|.+...+. ...|..+++|..+........ ... .+.....++|+|||||+||+++|..|+
T Consensus 89 ~~~~~g~vC~~~Ce~~C~~~~~~~-~v~i~~l~r~~~~~~~~~~~~---~~~-~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 89 FPEFTGRVCPAPCEGACTLNINFG-PVTIKNIERYIIDKAFEEGWV---KPD-PPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred hhHHhcCcCCchhHHhccCCCCCC-CccHHHHHHHHHHHHHHcCCC---CCC-CCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 556789999999999999998665 478888888887653211100 011 111234579999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010844 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+.+....... . +..........+......+. ..++.++.++....+.. ...
T Consensus 164 ~~G~~V~vie~~~~~GG~l~-~----gip~~~~~~~~~~~~~~~~~-~~gv~~~~~~~v~~~~~-----~~~-------- 224 (471)
T PRK12810 164 RAGHKVTVFERADRIGGLLR-Y----GIPDFKLEKEVIDRRIELME-AEGIEFRTNVEVGKDIT-----AEE-------- 224 (471)
T ss_pred hCCCcEEEEecCCCCCceee-e----cCCcccCCHHHHHHHHHHHH-hCCcEEEeCCEECCcCC-----HHH--------
Confidence 99999999999876532210 0 11111100011111111122 24677766554432211 111
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHH-HhhcCCCCCCHHHHhccccEEEeCcC
Q 010844 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLN-LMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
....||+||+|||+. +..+++||.+ .+++. +..+....... ......+ ......++|+|||||
T Consensus 225 ----~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~------~~~~l~~~~~~~~~~~~~~----~~~~~gk~VvVIGgG 290 (471)
T PRK12810 225 ----LLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHF------AMDFLIQNTRRVLGDETEP----FISAKGKHVVVIGGG 290 (471)
T ss_pred ----HHhhCCEEEEecCCCCCCcCCCCCccCCCcEE------HHHHHHHHHhhhccccccc----cccCCCCEEEEECCc
Confidence 135799999999997 7778899964 22222 11111110000 0000000 001235699999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCH--------HHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 010844 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDD--------RLRHYATTQLSKSGVRLVRG-IVKDVD 310 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~--------~~~~~~~~~l~~~gV~v~~~-~v~~v~ 310 (499)
++|+|+|..+.+.+. .+|++++.... +.... .......+.+++.||+++++ .+.++.
T Consensus 291 ~~g~e~A~~~~~~ga-------------~~Vt~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~ 356 (471)
T PRK12810 291 DTGMDCVGTAIRQGA-------------KSVTQRDIMPM-PPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFE 356 (471)
T ss_pred HHHHHHHHHHHHcCC-------------CeEEEccccCC-CccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEE
Confidence 999999998877652 47886654432 21111 00111345677889999998 788886
Q ss_pred C--Ce---EEE-----CCC---------cEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeC-CCCCCCCCCCeEE
Q 010844 311 S--QK---LIL-----NDG---------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRVPSVQDVFA 368 (499)
Q Consensus 311 ~--~~---v~~-----~~g---------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~~l~~~~~~~Ifa 368 (499)
. +. |.+ .+| +++++|.||+|+|+.|+ .+++.++++.+++|++.|| ++++| +.|+|||
T Consensus 357 ~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~T-s~~gVfa 435 (471)
T PRK12810 357 GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQT-SNPKVFA 435 (471)
T ss_pred ccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccC-CCCCEEE
Confidence 3 22 222 122 57999999999999997 3778888888889999998 78998 9999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||+. + +.++..|+.||+.||.+|..++.
T Consensus 436 ~GD~~~-----g----~~~~~~Av~~G~~AA~~i~~~L~ 465 (471)
T PRK12810 436 AGDMRR-----G----QSLVVWAIAEGRQAARAIDAYLM 465 (471)
T ss_pred ccccCC-----C----chhHHHHHHHHHHHHHHHHHHHh
Confidence 999995 1 55788999999999999999886
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.7e-33 Score=287.55 Aligned_cols=281 Identities=23% Similarity=0.332 Sum_probs=204.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chhh----------hhccCCCC-Cccccchhh
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLAS----------TCVGTLEF-RSVAEPIAR 122 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~~----------~~~g~~~~-~~~~~~~~~ 122 (499)
+|+|||||+||++||..|++.|.+|+|||+++. ... | ++.. ...|.... .....++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~-GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL-GGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc-cccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHH
Confidence 799999999999999999999999999998742 111 1 1000 01111100 011111111
Q ss_pred h--------------ccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010844 123 I--------------QPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 123 ~--------------~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
+ ...+....+++++++++..+|. +.+.+.. .++ ..++.||+||||||+.|..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~--~~v~v~~-~~~-------~~~~~~d~lviATGs~p~~~p~~ 150 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD--HRVRVEY-GDK-------EEVVDAEQFIIAAGSEPTELPFA 150 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC--CEEEEee-CCC-------cEEEECCEEEEeCCCCCCCCCCC
Confidence 1 1112334688999999988864 4454443 111 24799999999999999887777
Q ss_pred Cccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 010844 189 GVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDY 267 (499)
Q Consensus 189 G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~ 267 (499)
+.+. ..++ ..++. .....| ++++|||||++|+|+|..+.+++
T Consensus 151 ~~~~~~v~~---~~~~~----------~~~~~~----------~~vvIIGgG~iG~E~A~~l~~~g-------------- 193 (458)
T PRK06912 151 PFDGKWIIN---SKHAM----------SLPSIP----------SSLLIVGGGVIGCEFASIYSRLG-------------- 193 (458)
T ss_pred CCCCCeEEc---chHHh----------CccccC----------CcEEEECCCHHHHHHHHHHHHcC--------------
Confidence 7642 2222 12221 111222 48999999999999999998776
Q ss_pred eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEEC-CC--cEEeeeEEEEcCCCCcch-h-
Q 010844 268 IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILN-DG--TEVPYGLLVWSTGVGPST-L- 338 (499)
Q Consensus 268 ~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~-~g--~~i~~D~vi~a~G~~p~~-~- 338 (499)
.+|+++++. ++++.+++++.+.+.+.|++.||+++++ +|.+++.+ .+.+. +| +++++|.||+|+|.+|+. .
T Consensus 194 ~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l 273 (458)
T PRK06912 194 TKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQL 273 (458)
T ss_pred CeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCC
Confidence 899999986 6889899999999999999999999999 89888754 34443 34 369999999999999994 2
Q ss_pred -cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 339 -VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 339 -~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
++..++..+++| |.||+++|| +.|||||+|||+. . ++++..|.+||+.+|.||.
T Consensus 274 ~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~------~---~~la~~A~~~g~~aa~~~~ 328 (458)
T PRK06912 274 NLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIG------G---IQLAHVAFHEGTTAALHAS 328 (458)
T ss_pred CchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCC------C---cccHHHHHHHHHHHHHHHc
Confidence 345677777766 999999999 8999999999994 2 6789999999999999975
No 49
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=7.4e-34 Score=308.62 Aligned_cols=341 Identities=18% Similarity=0.178 Sum_probs=222.0
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010844 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-++|+|.+ +|+..|.+.........+..++++..+..... .....+.......++|+|||||+|||+||..
T Consensus 374 ~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~----~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~ 449 (752)
T PRK12778 374 LPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERES----GNISVPEVAEKNGKKVAVIGSGPAGLSFAGD 449 (752)
T ss_pred chhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHh----CCCCCCCCCCCCCCEEEEECcCHHHHHHHHH
Confidence 56678999997 89999999987623477777777776542110 0011111122356799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010844 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|||+.+.+.... .+....-.+ +.++ +......+.. .++++..+... .+.+++++
T Consensus 450 l~~~G~~V~v~e~~~~~GG~l-~~gip~~rl-p~~~---~~~~~~~l~~-~gv~~~~~~~v-----~~~v~~~~------ 512 (752)
T PRK12778 450 LAKRGYDVTVFEALHEIGGVL-KYGIPEFRL-PKKI---VDVEIENLKK-LGVKFETDVIV-----GKTITIEE------ 512 (752)
T ss_pred HHHCCCeEEEEecCCCCCCee-eecCCCCCC-CHHH---HHHHHHHHHH-CCCEEECCCEE-----CCcCCHHH------
Confidence 999999999999976543221 111110011 1111 1111111222 46777665433 22333332
Q ss_pred cCCCceeeeeCCeEEEcCCC-CccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCc
Q 010844 161 TLEPWKFKISYDKLVIALGA-EASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGg 238 (499)
.....||+||||||+ .|+.+++||.+ +.+++. .+....... .....+. ........++|+||||
T Consensus 513 -----l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~---~~~l~~~~~-----~~~~~~~-~~~~~~~gk~VvVIGg 578 (752)
T PRK12778 513 -----LEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSS---NEYLTRVNL-----MDAASPD-SDTPIKFGKKVAVVGG 578 (752)
T ss_pred -----HhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEH---HHHHHHHhh-----ccccccc-ccCcccCCCcEEEECC
Confidence 124679999999998 58888999964 223222 222211110 0000000 0001124579999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C
Q 010844 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q 312 (499)
Q Consensus 239 G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~ 312 (499)
|++|+|+|..+.+++ .+ |+++++.. .+|....++ +.+++.||+++.+ .+.++.. +
T Consensus 579 G~~a~d~A~~~~r~G--------------a~~Vtlv~r~~~~~~~~~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~ 639 (752)
T PRK12778 579 GNTAMDSARTAKRLG--------------AERVTIVYRRSEEEMPARLEEV-----KHAKEEGIEFLTLHNPIEYLADEK 639 (752)
T ss_pred cHHHHHHHHHHHHcC--------------CCeEEEeeecCcccCCCCHHHH-----HHHHHcCCEEEecCcceEEEECCC
Confidence 999999999998876 54 99999752 344332221 3467789999987 6666642 1
Q ss_pred ----eEEEC---------CC-----------cEEeeeEEEEcCCCCcch-hcccC-CCCCCCCCceeeCCCCCCCCCCCe
Q 010844 313 ----KLILN---------DG-----------TEVPYGLLVWSTGVGPST-LVKSL-DLPKSPGGRIGIDEWLRVPSVQDV 366 (499)
Q Consensus 313 ----~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~-~~~~~-~l~~~~~G~i~vd~~l~~~~~~~I 366 (499)
+|.+. +| .+++||.||+|+|+.|+. ++... +++++++|+|.||++++| +.|+|
T Consensus 640 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~gV 718 (752)
T PRK12778 640 GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS-SIPGI 718 (752)
T ss_pred CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCC-CCCCE
Confidence 23331 12 269999999999999995 44443 688888899999999998 99999
Q ss_pred EEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 367 FAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 367 fa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+|||+. | +.++..|+.+|+.||.+|.+.+.
T Consensus 719 fA~GD~~~-----g----~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 719 YAGGDIVR-----G----GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred EEeCCccC-----C----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999995 2 67899999999999999998875
No 50
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=3.1e-33 Score=305.45 Aligned_cols=344 Identities=17% Similarity=0.185 Sum_probs=221.5
Q ss_pred ccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccc--cccCCC-CCCCCCCCCcEEEECCchHHHHH
Q 010844 3 LFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQL--TQYSGL-GPTKANEKPRVVVLGSGWAGCRL 77 (499)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~VvIIGgG~aGl~a 77 (499)
|+--++|+|.+ +|+.+|.+. + ....|..+.+|..+........ ...... .+......++|+|||||||||+|
T Consensus 245 ~p~~~GrVCp~~~~CE~~C~~~--~-~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsa 321 (944)
T PRK12779 245 LPNVTGRVCPQELQCQGVCTHT--K-RPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLIN 321 (944)
T ss_pred hhHHhcCcCCCccCHHHhccCC--C-cCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHH
Confidence 45568999999 699999988 3 3577888887766542100000 000000 11112346899999999999999
Q ss_pred HHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecC
Q 010844 78 MKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTD 157 (499)
Q Consensus 78 A~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~ 157 (499)
|.+|++.|++|||||+.+...... ..|.+..+.-..-+......+. ..++.|..+...+ +.+++++.
T Consensus 322 A~~Lar~G~~VtVfE~~~~~GG~l-----~yGIP~~rlp~~vi~~~i~~l~-~~Gv~f~~n~~vG-----~dit~~~l-- 388 (944)
T PRK12779 322 AYLLAVEGFPVTVFEAFHDLGGVL-----RYGIPEFRLPNQLIDDVVEKIK-LLGGRFVKNFVVG-----KTATLEDL-- 388 (944)
T ss_pred HHHHHHCCCeEEEEeeCCCCCceE-----EccCCCCcChHHHHHHHHHHHH-hhcCeEEEeEEec-----cEEeHHHh--
Confidence 999999999999999987654321 1122221111111111112222 2577887765543 33444431
Q ss_pred ccccCCCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEE
Q 010844 158 ELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVV 235 (499)
Q Consensus 158 ~~~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvV 235 (499)
....||+||||||+. |+.++|||.+ +++++ ..+.....+... ... .... .+......++|+|
T Consensus 389 ---------~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~---a~dfL~~~~~~~-~~~-~~~~--~~~~~~~Gk~VvV 452 (944)
T PRK12779 389 ---------KAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMS---ANEFLTRVNLMR-GLD-DDYE--TPLPEVKGKEVFV 452 (944)
T ss_pred ---------ccccCCEEEEeCCCCCCCcCCCCCCcCcCcEE---HHHHHHHHHhhc-ccc-cccc--ccccccCCCEEEE
Confidence 245799999999995 8889999964 22222 222221111100 000 0000 0000124579999
Q ss_pred eCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC
Q 010844 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ 312 (499)
Q Consensus 236 vGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~ 312 (499)
||||++|+|+|..+.+.+ .+|+++++.. .+|....++ .+ ..+.||+++.+ .+.++..+
T Consensus 453 IGGG~tA~D~A~ta~R~G--------------a~Vtlv~rr~~~~mpa~~~e~----~~-a~eeGV~~~~~~~p~~i~~d 513 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLG--------------GNVTIVYRRTKSEMPARVEEL----HH-ALEEGINLAVLRAPREFIGD 513 (944)
T ss_pred ECCCHHHHHHHHHHHHcC--------------CEEEEEEecCcccccccHHHH----HH-HHHCCCEEEeCcceEEEEec
Confidence 999999999999999887 7899998762 444333222 22 24569999987 67776432
Q ss_pred ----eE---EE---------C--------CC--cEEeeeEEEEcCCCCcchhcc--cCCCCCCCCCceeeCC-CCCCCCC
Q 010844 313 ----KL---IL---------N--------DG--TEVPYGLLVWSTGVGPSTLVK--SLDLPKSPGGRIGIDE-WLRVPSV 363 (499)
Q Consensus 313 ----~v---~~---------~--------~g--~~i~~D~vi~a~G~~p~~~~~--~~~l~~~~~G~i~vd~-~l~~~~~ 363 (499)
.| .+ . +| .+++||.||+|+|+.|++.+. ..+++.+++|.|.||+ .++| +.
T Consensus 514 ~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~T-s~ 592 (944)
T PRK12779 514 DHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRT-SI 592 (944)
T ss_pred CCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCcc-CC
Confidence 12 11 1 22 369999999999999996443 3467888889999997 4787 99
Q ss_pred CCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 364 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 364 ~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+|||+|||+. | +.++..|+.+|+.||.+|..++.
T Consensus 593 pgVFAaGD~~~-----G----~~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 593 KGVYSGGDAAR-----G----GSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCEEEEEcCCC-----C----hHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999995 2 66899999999999999998876
No 51
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=300.84 Aligned_cols=333 Identities=19% Similarity=0.209 Sum_probs=220.3
Q ss_pred ccccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhc
Q 010844 2 SLFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGI 81 (499)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L 81 (499)
-|+..++|+|.|+|+..|.+...+.| ..++.+.+|..+....... ...+.......++|+|||||+|||++|..|
T Consensus 138 p~p~~~grvC~~~Ce~~C~r~~~~~~-v~i~~l~r~~~~~~~~~~~----~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 138 PLPGILGRICPAPCEEACRRHGVDEP-VSICALKRYAADRDMESAE----RYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred CccceeeCCcCchhhHHHcCCCCCCC-cchhHHHHHHHHHHHhcCc----ccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 36677899999999999999877654 6678788887654221000 001111123457999999999999999999
Q ss_pred cCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcccc
Q 010844 82 DTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRT 161 (499)
Q Consensus 82 ~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~ 161 (499)
++.|++|+|||+++........ .. .....+..+. ......+. ..++.+..+++.+++ +.++.
T Consensus 213 a~~G~~Vtv~e~~~~~GG~l~~-gi-p~~~~~~~~~---~~~~~~l~-~~Gv~i~~~~~v~~d-----v~~~~------- 274 (652)
T PRK12814 213 LRKGHDVTIFDANEQAGGMMRY-GI-PRFRLPESVI---DADIAPLR-AMGAEFRFNTVFGRD-----ITLEE------- 274 (652)
T ss_pred HHCCCcEEEEecCCCCCceeee-cC-CCCCCCHHHH---HHHHHHHH-HcCCEEEeCCcccCc-----cCHHH-------
Confidence 9999999999998765322110 00 0000111111 11111122 245666555443322 11111
Q ss_pred CCCceeeeeCCeEEEcCCCCc-cCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010844 162 LEPWKFKISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 162 ~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
....||+||||||+.+ ..+++||.+. .++ .+..+..... .. ......++|+|||||
T Consensus 275 -----~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~------~~~~~l~~~~----~~-------~~~~~gk~VvVIGgG 332 (652)
T PRK12814 275 -----LQKEFDAVLLAVGAQKASKMGIPGEELPGVI------SGIDFLRNVA----LG-------TALHPGKKVVVIGGG 332 (652)
T ss_pred -----HHhhcCEEEEEcCCCCCCCCCCCCcCcCCcE------eHHHHHHHhh----cC-------CcccCCCeEEEECCC
Confidence 1235999999999985 4678898642 221 1111111110 00 011235799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE
Q 010844 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL 314 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v 314 (499)
++|+|+|..+.+.+. .+|+++++. ..+|..+.++. +. .+.||+++.+ .+.++.. +.+
T Consensus 333 ~~a~e~A~~l~~~Ga-------------~~Vtlv~r~~~~~mpa~~~ei~----~a-~~eGV~i~~~~~~~~i~~~~~~~ 394 (652)
T PRK12814 333 NTAIDAARTALRLGA-------------ESVTILYRRTREEMPANRAEIE----EA-LAEGVSLRELAAPVSIERSEGGL 394 (652)
T ss_pred HHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH----HH-HHcCCcEEeccCcEEEEecCCeE
Confidence 999999999887662 479999976 35665544332 22 3569999987 6666652 221
Q ss_pred -----EEC---------------CCc--EEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCC-CCCCCCCCCeEEec
Q 010844 315 -----ILN---------------DGT--EVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDE-WLRVPSVQDVFAVG 370 (499)
Q Consensus 315 -----~~~---------------~g~--~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~G 370 (499)
.++ +|+ ++++|.||+++|+.|+ .++...+++++.+|+|.||+ +++| +.|+|||+|
T Consensus 395 ~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~T-s~pgVfA~G 473 (652)
T PRK12814 395 ELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQT-SVAGVFAGG 473 (652)
T ss_pred EEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcC-CCCCEEEcC
Confidence 111 122 5999999999999999 47777788888889999997 4777 999999999
Q ss_pred cccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 371 DCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 371 D~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
||+. + +.++..|++||+.||.+|..++.
T Consensus 474 Dv~~-----g----~~~v~~Ai~~G~~AA~~I~~~L~ 501 (652)
T PRK12814 474 DCVT-----G----ADIAINAVEQGKRAAHAIDLFLN 501 (652)
T ss_pred CcCC-----C----chHHHHHHHHHHHHHHHHHHHHc
Confidence 9984 1 67889999999999999999987
No 52
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.2e-32 Score=280.82 Aligned_cols=286 Identities=21% Similarity=0.285 Sum_probs=204.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcC------CCCcccc-------cc---hh-----h-h-----hccCCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP------RNHMVFT-------PL---LA-----S-T-----CVGTLEFR 114 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~------~~~~~~~-------~~---~~-----~-~-----~~g~~~~~ 114 (499)
.+||+|||||+||++||.++++.|.+|+|||+ ...+... |. +. . . ..|. ...
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~-~~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI-HVD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc-cCC
Confidence 57999999999999999999999999999998 1221111 11 00 0 0 0011 111
Q ss_pred ccccch--------------hhhccccccCCCeEEEEEEEEEEECC--CCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010844 115 SVAEPI--------------ARIQPAISREPGSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 115 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
....++ +.....+.+..++.++.+++..++.. .+.|.+... + ..+++||+|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~--~-------~~~~~~d~lViAT 153 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGE--D-------ETVITAKHVIIAT 153 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecC--C-------CeEEEeCEEEEeC
Confidence 100011 11111233346889999999888743 455655421 1 1379999999999
Q ss_pred CCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010844 179 GAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 179 G~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
|+.|..++..+.... .+.+..+... .... .++|+|||+|++|+|+|..+.+++
T Consensus 154 Gs~p~~~p~~~~~~~--~~~~~~~~~~----------~~~~----------~~~vvVvGgG~~g~E~A~~l~~~g----- 206 (475)
T PRK06327 154 GSEPRHLPGVPFDNK--IILDNTGALN----------FTEV----------PKKLAVIGAGVIGLELGSVWRRLG----- 206 (475)
T ss_pred CCCCCCCCCCCCCCc--eEECcHHHhc----------cccc----------CCeEEEECCCHHHHHHHHHHHHcC-----
Confidence 999865422221111 1111111111 1112 259999999999999999998876
Q ss_pred HhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEECC--C--cEEeeeEEE
Q 010844 259 QRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILND--G--TEVPYGLLV 328 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~~--g--~~i~~D~vi 328 (499)
.+|+++++. .+++.+++++.+.+.+.|++.||+++++ +|.+++.+ . +.+.+ | +++++|.++
T Consensus 207 ---------~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl 277 (475)
T PRK06327 207 ---------AEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLI 277 (475)
T ss_pred ---------CeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEE
Confidence 899999987 6888889999999999999999999999 89888643 3 34444 3 479999999
Q ss_pred EcCCCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 329 WSTGVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 329 ~a~G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
+++|.+|+. .++.++++++++|+|.||+++|| +.|+|||+|||+. . |++++.|..||+.+|.||.
T Consensus 278 ~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA~GD~~~------~---~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 278 VSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYAIGDVVR------G---PMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred EccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEEEEeccC------C---cchHHHHHHHHHHHHHHHc
Confidence 999999994 24567888888999999999999 8999999999994 1 6789999999999999985
No 53
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=3.2e-32 Score=279.50 Aligned_cols=280 Identities=21% Similarity=0.289 Sum_probs=201.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc-------c---chh-----hhh-----ccC------CCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT-------P---LLA-----STC-----VGT------LEFRS 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~-------~---~~~-----~~~-----~g~------~~~~~ 115 (499)
++||+|||||++|..+|..+ .|.+|+|||++. +... | ++. ... .|. +++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~--~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 78 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF--ADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH--CCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHH
Confidence 47999999999999987654 599999999853 2111 1 000 000 010 11111
Q ss_pred cccch-----hhhc----cccc--cCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010844 116 VAEPI-----ARIQ----PAIS--REPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 116 ~~~~~-----~~~~----~~~~--~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+.... ..+. .... +..+++++.++..-+ +.+.|.+.+ + .++.||+||||||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~--~~~~V~~~~---g--------~~~~~d~lIiATGs~p~~ 145 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV--GPRTLRTGD---G--------EEITGDQIVIAAGSRPYI 145 (452)
T ss_pred HHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe--cCCEEEECC---C--------cEEEeCEEEEEECCCCCC
Confidence 11111 0110 0011 226788888877655 456776643 2 368999999999999987
Q ss_pred CCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 010844 185 FGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHV 264 (499)
Q Consensus 185 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~ 264 (499)
|++++.. ...+.+.+++..+.. .| ++++|||||++|+|+|..|..++
T Consensus 146 p~~~~~~--~~~~~~~~~~~~l~~----------~~----------k~vvVIGgG~ig~E~A~~l~~~G----------- 192 (452)
T TIGR03452 146 PPAIADS--GVRYHTNEDIMRLPE----------LP----------ESLVIVGGGYIAAEFAHVFSALG----------- 192 (452)
T ss_pred CCCCCCC--CCEEEcHHHHHhhhh----------cC----------CcEEEECCCHHHHHHHHHHHhCC-----------
Confidence 7644321 223455555544321 12 49999999999999999998877
Q ss_pred CCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCcch-
Q 010844 265 KDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPST- 337 (499)
Q Consensus 265 ~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~- 337 (499)
.+|+++++. .+++.+++++.+.+.+.+ +.||+++++ +|.+++. ++ +.+.+|+++++|.|++++|.+|+.
T Consensus 193 ---~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 193 ---TRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred ---CcEEEEEccCccccccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 899999987 688889999988887755 468999998 8888863 33 455678899999999999999995
Q ss_pred h--cccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 338 L--VKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 ~--~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
+ ++..+++++++|+|.||+++|| +.|+|||+|||+.. +++++.|.+||+++|+||..
T Consensus 269 ~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~---------~~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 269 LLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSP---------YQLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCc---------ccChhHHHHHHHHHHHHhcC
Confidence 4 3556888888999999999998 99999999999951 57789999999999999863
No 54
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.5e-32 Score=286.21 Aligned_cols=284 Identities=19% Similarity=0.197 Sum_probs=197.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc----hhhhhccC--CCCCccccchhhhccccccCCCe
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL----LASTCVGT--LEFRSVAEPIARIQPAISREPGS 133 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~----~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~ 133 (499)
...++|+|||||+||++||.+|++.|++|+||++. +..++. +..+ .+. .....+...+.+. +.. .++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~---l~~-~gv 282 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENL-ISVPYTTGSQLAANLEEH---IKQ-YPI 282 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccc-cccCCCCHHHHHHHHHHH---HHH-hCC
Confidence 44689999999999999999999999999999753 221211 1111 011 0111111222222 222 467
Q ss_pred EEEE-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHH
Q 010844 134 YFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLL 212 (499)
Q Consensus 134 ~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~ 212 (499)
.++. .+|++++.+.+.+.+... ++ ..+.||+||+|||+.++.+++||..++. ...+.........
T Consensus 283 ~i~~~~~V~~I~~~~~~~~v~~~-~g--------~~i~~d~lIlAtGa~~~~~~ipG~~~~~--~~~v~~~~~~~~~--- 348 (515)
T TIGR03140 283 DLMENQRAKKIETEDGLIVVTLE-SG--------EVLKAKSVIVATGARWRKLGVPGEKEYI--GKGVAYCPHCDGP--- 348 (515)
T ss_pred eEEcCCEEEEEEecCCeEEEEEC-CC--------CEEEeCEEEECCCCCcCCCCCCCHHHcC--CCeEEEeeccChh---
Confidence 7665 588999877655544431 12 3799999999999999989999964321 1100000000000
Q ss_pred HHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHH
Q 010844 213 NLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT 292 (499)
Q Consensus 213 ~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~ 292 (499)
....++|+|||||++|+|+|..|+..+ .+||++++.+.+. ....+.+
T Consensus 349 --------------~~~~k~VvViGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~l~-----~~~~l~~ 395 (515)
T TIGR03140 349 --------------FFKGKDVAVIGGGNSGIEAAIDLAGIV--------------RHVTVLEFADELK-----ADKVLQD 395 (515)
T ss_pred --------------hcCCCEEEEECCcHHHHHHHHHHHhcC--------------cEEEEEEeCCcCC-----hhHHHHH
Confidence 122469999999999999999998876 8999999764221 1244566
Q ss_pred HHHh-CCCEEEeC-ceEEEeCC-----eEEECC---C--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCC
Q 010844 293 QLSK-SGVRLVRG-IVKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLR 359 (499)
Q Consensus 293 ~l~~-~gV~v~~~-~v~~v~~~-----~v~~~~---g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~ 359 (499)
.+++ .||+++.+ .+.++.++ +|.+++ + +++++|.|++++|..|+ .+++.. ++.+++|+|.||+++|
T Consensus 396 ~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~ 474 (515)
T TIGR03140 396 KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGR 474 (515)
T ss_pred HHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCC
Confidence 7776 59999999 88888765 366643 2 46999999999999999 466655 7778889999999999
Q ss_pred CCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 360 VPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 360 ~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
| +.|+|||+|||+..+ .+++..|+.+|..||.+|..++.
T Consensus 475 T-s~p~IyAaGDv~~~~--------~~~~~~A~~~G~~Aa~~i~~~~~ 513 (515)
T TIGR03140 475 T-SVPGIFAAGDVTTVP--------YKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred C-CCCCEEEcccccCCc--------cceEEEEEccHHHHHHHHHHHHh
Confidence 9 999999999999531 24566799999999999988764
No 55
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=3.6e-32 Score=285.44 Aligned_cols=286 Identities=17% Similarity=0.155 Sum_probs=195.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhh---ccC--CCCCccccchhhhccccccCCCeEEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTC---VGT--LEFRSVAEPIARIQPAISREPGSYFF 136 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (499)
.++|+|||||||||+||.+|++.|++|+|||++.. ..+....... .+. .....+...++. .....++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~----~~~~~gv~~~ 78 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQ----QAQDFGVKFL 78 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHH----HHHHcCCEEe
Confidence 58999999999999999999999999999998643 2221110000 111 011112222222 2223467888
Q ss_pred EEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhh
Q 010844 137 LSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 137 ~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
.++|+.++.+.+...+... + ..+.||+||||||+.|+.|++||.+... ...+........
T Consensus 79 ~~~V~~i~~~~~~~~V~~~-~---------g~~~a~~lVlATGa~p~~~~ipG~~~~~--~~~v~~~~~~~~-------- 138 (555)
T TIGR03143 79 QAEVLDVDFDGDIKTIKTA-R---------GDYKTLAVLIATGASPRKLGFPGEEEFT--GRGVAYCATCDG-------- 138 (555)
T ss_pred ccEEEEEEecCCEEEEEec-C---------CEEEEeEEEECCCCccCCCCCCCHHHhC--CceEEEEeecCh--------
Confidence 8899999987654444331 1 2588999999999999999999964311 111000000000
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHh
Q 010844 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSK 296 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~ 296 (499)
.....++|+|||||++|+|+|..|.+++ .+|+++++.+.+. ..... ..+.++.
T Consensus 139 ---------~~~~g~~VvVIGgG~~g~E~A~~L~~~g--------------~~Vtli~~~~~~~-~~~~~---~~~~~~~ 191 (555)
T TIGR03143 139 ---------EFFTGMDVFVIGGGFAAAEEAVFLTRYA--------------SKVTVIVREPDFT-CAKLI---AEKVKNH 191 (555)
T ss_pred ---------hhcCCCEEEEECCCHHHHHHHHHHHccC--------------CEEEEEEeCCccc-cCHHH---HHHHHhC
Confidence 0123469999999999999999998776 8999999874221 12222 2333455
Q ss_pred CCCEEEeC-ceEEEeCCe----EEE---CCCcEE----eeeE----EEEcCCCCcchhcccCCCCCCCCCceeeCCCCCC
Q 010844 297 SGVRLVRG-IVKDVDSQK----LIL---NDGTEV----PYGL----LVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRV 360 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~~----v~~---~~g~~i----~~D~----vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~ 360 (499)
.||+++.+ .|.++.++. +.+ .+|++. ++|. |+|++|++|+..+...+++++++|+|.||+++||
T Consensus 192 ~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~~T 271 (555)
T TIGR03143 192 PKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDMET 271 (555)
T ss_pred CCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcccc
Confidence 79999999 899997652 222 356543 3666 9999999999533334677888899999999999
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010844 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
+.|+|||+|||+.. .+..+..|++||+.||.+|.+++..
T Consensus 272 -s~p~IyAaGDv~~~--------~~~~v~~A~~~G~~Aa~~i~~~l~~ 310 (555)
T TIGR03143 272 -NVPGVYAAGDLRPK--------ELRQVVTAVADGAIAATSAERYVKE 310 (555)
T ss_pred -CCCCEEEceeccCC--------CcchheeHHhhHHHHHHHHHHHHHh
Confidence 99999999999831 1445678999999999999988863
No 56
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=2.8e-32 Score=275.51 Aligned_cols=290 Identities=24% Similarity=0.384 Sum_probs=239.5
Q ss_pred CCcEEEECCchHHHHHHHhccC---CCCeEEEEcCCCCcccc-cchhhhhccCCCCCccccchhhhccccccCCCeEEEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDT---SLYDVVCVSPRNHMVFT-PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~---~g~~V~lie~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
+.++||||.|++|..+..++.+ .-++||++-.+++..|. ..+..+..+..+.+++...-.+ ++...++.++.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~d----wy~~~~i~L~~ 78 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRND----WYEENGITLYT 78 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchh----hHHHcCcEEEc
Confidence 4689999999999998877766 45789999999998887 6677777776666555443333 34456777766
Q ss_pred E-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHh
Q 010844 138 S-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLM 215 (499)
Q Consensus 138 ~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (499)
+ +|+.||++++.|+.+. +..+.||.||+||||.|+.+++||.+ ..++.+++++|..++...-
T Consensus 79 ~~~v~~idr~~k~V~t~~-----------g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~a----- 142 (793)
T COG1251 79 GEKVIQIDRANKVVTTDA-----------GRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCA----- 142 (793)
T ss_pred CCeeEEeccCcceEEccC-----------CcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHH-----
Confidence 5 9999999999998876 35899999999999999999999986 5788899999988776541
Q ss_pred hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-CCCCHHHHHHHHHH
Q 010844 216 LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-SSFDDRLRHYATTQ 293 (499)
Q Consensus 216 ~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-~~~~~~~~~~~~~~ 293 (499)
+..++.+|||||..|+|+|..|.+.+ .++++++-.+ ++ ..+++.....+.+.
T Consensus 143 ------------r~~~~avVIGGGLLGlEaA~~L~~~G--------------m~~~Vvh~~~~lMerQLD~~ag~lL~~~ 196 (793)
T COG1251 143 ------------RNKKKAVVIGGGLLGLEAARGLKDLG--------------MEVTVVHIAPTLMERQLDRTAGRLLRRK 196 (793)
T ss_pred ------------hccCCcEEEccchhhhHHHHHHHhCC--------------CceEEEeecchHHHHhhhhHHHHHHHHH
Confidence 33347899999999999999999988 8899998763 33 47888899999999
Q ss_pred HHhCCCEEEeC-ceEEEe----CCeEEECCCcEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010844 294 LSKSGVRLVRG-IVKDVD----SQKLILNDGTEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~----~~~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
+++.||+++++ ..+++. .+++.++||+++++|+||||+|++|| .+....|++.++ .|.||++||| +.|+||
T Consensus 197 le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd~mqT-sdpdIY 273 (793)
T COG1251 197 LEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVNDYMQT-SDPDIY 273 (793)
T ss_pred HHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCC--Ceeecccccc-cCCCee
Confidence 99999999998 444443 24799999999999999999999999 688889999887 5999999999 999999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010844 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
|+|+|+.+.. ....+...+..||+.+|.++...
T Consensus 274 AvGEcae~~g-----~~yGLVaP~yeq~~v~a~hl~~~ 306 (793)
T COG1251 274 AVGECAEHRG-----KVYGLVAPLYEQAKVLADHLCGG 306 (793)
T ss_pred ehhhHHHhcC-----ccceehhHHHHHHHHHHHHhccC
Confidence 9999998643 23556777999999999998654
No 57
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-31 Score=256.69 Aligned_cols=284 Identities=19% Similarity=0.206 Sum_probs=206.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccchhhhhccCCCCCc--cccchhhhccccccCCCeEEEE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLASTCVGTLEFRS--VAEPIARIQPAISREPGSYFFL 137 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 137 (499)
.++||+|||||||||+||.++++.+.+ ++|+|... ...++.......+.+.... ....+.+....+....++.+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~-~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGE-PGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCC-cCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 468999999999999999999999999 66666542 2222111111111111111 1122333333344457888888
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHH
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+|..++.....+.+...+ .++.+++||||||..++.|.+||..++ ..+.+...|. .
T Consensus 81 ~~v~~v~~~~~~F~v~t~~----------~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~--------- 140 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDK----------GTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-F--------- 140 (305)
T ss_pred EEEEEEeecCceEEEEECC----------CeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-c---------
Confidence 9999998876444444311 259999999999999999999875421 2223332332 1
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHH
Q 010844 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l 294 (499)
.+.++|+|||||.+++|.|..|...+ .+||+++|.+-+.. .+.+.+.+
T Consensus 141 -------------~~~k~v~ViGgG~sAve~Al~L~~~a--------------~~Vtlv~r~~~~ra-----~~~~~~~l 188 (305)
T COG0492 141 -------------FKGKDVVVIGGGDSAVEEALYLSKIA--------------KKVTLVHRRDEFRA-----EEILVERL 188 (305)
T ss_pred -------------ccCCeEEEEcCCHHHHHHHHHHHHhc--------------CeEEEEecCcccCc-----CHHHHHHH
Confidence 23358999999999999999999988 88999999854433 34455566
Q ss_pred HhC-CCEEEeC-ceEEEeC---CeEEECCC----cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCC
Q 010844 295 SKS-GVRLVRG-IVKDVDS---QKLILNDG----TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQ 364 (499)
Q Consensus 295 ~~~-gV~v~~~-~v~~v~~---~~v~~~~g----~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~ 364 (499)
++. +|+++.+ .+.++.+ ++|.+++. +++++|-+++++|..|+ .+++..+. ++++|+|.||+.++| +.|
T Consensus 189 ~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~-~~~~g~I~v~~~~~T-svp 266 (305)
T COG0492 189 KKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV-LDENGYIVVDEEMET-SVP 266 (305)
T ss_pred HhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc-cCCCCcEEcCCCccc-CCC
Confidence 655 8999999 8999988 47788763 37899999999999999 57777766 889999999999999 999
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||+|||+..+ .+++..|..+|..||.++.+.+.
T Consensus 267 GifAaGDv~~~~--------~rqi~ta~~~G~~Aa~~a~~~l~ 301 (305)
T COG0492 267 GIFAAGDVADKN--------GRQIATAAGDGAIAALSAERYLE 301 (305)
T ss_pred CEEEeEeeccCc--------ccEEeehhhhHHHHHHHHHHHhh
Confidence 999999999631 33677899999999998888775
No 58
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-31 Score=278.29 Aligned_cols=285 Identities=20% Similarity=0.268 Sum_probs=198.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC-Ccccc-------c---chh-----hhh--------ccCC------
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN-HMVFT-------P---LLA-----STC--------VGTL------ 111 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~-~~~~~-------~---~~~-----~~~--------~g~~------ 111 (499)
++||+|||+|++|+.+|..+++.|.+|+|||+.. .+... | ++. ..+ .|..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~~~ 195 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAFKN 195 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccccc
Confidence 5799999999999999999999999999999642 22211 1 000 000 0100
Q ss_pred ------------------CCCccccc-------hhhhc-cccccC------CCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010844 112 ------------------EFRSVAEP-------IARIQ-PAISRE------PGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 112 ------------------~~~~~~~~-------~~~~~-~~~~~~------~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
++..+... ++... ..+... .++.++.++..-++ .++|.+.. ++
T Consensus 196 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~--~~~v~v~~--~g- 270 (659)
T PTZ00153 196 GKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVD--KNTIKSEK--SG- 270 (659)
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEec--CCeEEEcc--CC-
Confidence 00000011 11100 111111 14677777665554 34455431 11
Q ss_pred ccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010844 160 RTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
.++.||+||||||+.|..|++++.+.. .+.+..++..+. .+| ++|+|||||
T Consensus 271 -------~~i~ad~lIIATGS~P~~P~~~~~~~~--~V~ts~d~~~l~----------~lp----------k~VvIVGgG 321 (659)
T PTZ00153 271 -------KEFKVKNIIIATGSTPNIPDNIEVDQK--SVFTSDTAVKLE----------GLQ----------NYMGIVGMG 321 (659)
T ss_pred -------EEEECCEEEEcCCCCCCCCCCCCCCCC--cEEehHHhhhhh----------hcC----------CceEEECCC
Confidence 478999999999999988876665321 122333333321 122 489999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHH-HhCCCEEEeC-ceEEEeCCe---
Q 010844 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQL-SKSGVRLVRG-IVKDVDSQK--- 313 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l-~~~gV~v~~~-~v~~v~~~~--- 313 (499)
++|+|+|..+..++ .+||++++. ++++.+++++.+.+.+.+ ++.||+++++ .|.+++.+.
T Consensus 322 ~iGvE~A~~l~~~G--------------~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~ 387 (659)
T PTZ00153 322 IIGLEFMDIYTALG--------------SEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQ 387 (659)
T ss_pred HHHHHHHHHHHhCC--------------CeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCce
Confidence 99999999998877 899999986 789999999999999876 6799999999 898887531
Q ss_pred -EEE--CC-------C--------cEEeeeEEEEcCCCCcch-h--cccCCCCCCCCCceeeCCCCCCCC-----CCCeE
Q 010844 314 -LIL--ND-------G--------TEVPYGLLVWSTGVGPST-L--VKSLDLPKSPGGRIGIDEWLRVPS-----VQDVF 367 (499)
Q Consensus 314 -v~~--~~-------g--------~~i~~D~vi~a~G~~p~~-~--~~~~~l~~~~~G~i~vd~~l~~~~-----~~~If 367 (499)
+.+ .+ + +++++|.|+||+|.+||. . ++..++..+ +|+|.||++|||.. .||||
T Consensus 388 ~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IY 466 (659)
T PTZ00153 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIF 466 (659)
T ss_pred EEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEE
Confidence 433 21 1 379999999999999994 3 356677776 48999999999932 69999
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|+|||+. . +++++.|.+||+.+|+||..
T Consensus 467 AiGDv~g------~---~~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 467 CIGDANG------K---QMLAHTASHQALKVVDWIEG 494 (659)
T ss_pred EEEecCC------C---ccCHHHHHHHHHHHHHHHcC
Confidence 9999983 2 67899999999999999964
No 59
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=7.2e-32 Score=277.29 Aligned_cols=343 Identities=17% Similarity=0.154 Sum_probs=220.3
Q ss_pred cccccccccc--cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010844 3 LFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+.-++|+|. ++|++.|.+...+.| ..+..+++|..+....... .+.++.. ....++|+|||||++|+++|..
T Consensus 85 ~~~~~grvC~~~~~Ce~~C~~~~~~~~-v~i~~l~r~~~~~~~~~~~---~~~~~~~-~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 85 LPEICGRVCPQDRLCEGACTLNDEFGA-VTIGNLERYITDTALAMGW---RPDLSHV-VPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred chHhhcccCCCCCChHHhCcCCCCCCC-ccHHHHHHHHHHHHHHhCC---CCCCCCc-CCCCCeEEEECCCHHHHHHHHH
Confidence 5567899998 599999999987654 7788888888665432111 1111111 1245799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010844 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++|+|+|+.+....... .|..........+......+ ...+++++.+.... +.+.+++
T Consensus 160 l~~~G~~V~i~e~~~~~gG~l~-----~gip~~~~~~~~~~~~~~~~-~~~Gv~~~~~~~v~-----~~~~~~~------ 222 (467)
T TIGR01318 160 LARAGVQVVVFDRHPEIGGLLT-----FGIPSFKLDKAVLSRRREIF-TAMGIEFHLNCEVG-----RDISLDD------ 222 (467)
T ss_pred HHHcCCeEEEEecCCCCCceee-----ecCccccCCHHHHHHHHHHH-HHCCCEEECCCEeC-----CccCHHH------
Confidence 9999999999999876532211 01111110000111111112 22466665443211 1121111
Q ss_pred cCCCceeeeeCCeEEEcCCCCcc-CCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCc
Q 010844 161 TLEPWKFKISYDKLVIALGAEAS-TFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGG 238 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGg 238 (499)
....||.||+|||+.+. .+++||.+. .++. ..+......+.. +.....+.. .......++++|||+
T Consensus 223 ------~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~---a~~~l~~~~~~~--~~~~~~~~~-~~~~~~gk~VvVIGg 290 (467)
T TIGR01318 223 ------LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQ---ALPFLIANTRQL--MGLPESPEE-PLIDVEGKRVVVLGG 290 (467)
T ss_pred ------HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEE---HHHHHHHHHHHh--cCCCccccc-cccccCCCEEEEECC
Confidence 13479999999999864 568898642 2221 111111100000 000000000 000123469999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-
Q 010844 239 GPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q- 312 (499)
Q Consensus 239 G~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~- 312 (499)
|++|+|+|..+.+++. .+||++++. . .++..+..+ +.+++.||+++.+ .+.++.. +
T Consensus 291 G~~a~d~A~~a~~~Ga-------------~~Vtvv~r~~~~~~~~~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g 352 (467)
T TIGR01318 291 GDTAMDCVRTAIRLGA-------------ASVTCAYRRDEANMPGSRREV-----ANAREEGVEFLFNVQPVYIECDEDG 352 (467)
T ss_pred cHHHHHHHHHHHHcCC-------------CeEEEEEecCcccCCCCHHHH-----HHHHhcCCEEEecCCcEEEEECCCC
Confidence 9999999999887761 479999975 3 455543332 3467789999998 7878753 1
Q ss_pred e---EEEC---------CC-----------cEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeC----CCCCCCCC
Q 010844 313 K---LILN---------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID----EWLRVPSV 363 (499)
Q Consensus 313 ~---v~~~---------~g-----------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd----~~l~~~~~ 363 (499)
. |++. +| .++++|.||+++|+.|+ .++...+++++++|+|.|| .+++| +.
T Consensus 353 ~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T-~~ 431 (467)
T TIGR01318 353 RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQT-TN 431 (467)
T ss_pred eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccC-CC
Confidence 1 2321 11 36999999999999997 3666778888888999999 67888 89
Q ss_pred CCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 364 QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 364 ~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|+|||+|||+. + +.++..|+.+|+.+|.+|..++.
T Consensus 432 ~gVfa~GD~~~-----~----~~~~~~Ai~~G~~aA~~i~~~L~ 466 (467)
T TIGR01318 432 PKIFAGGDAVR-----G----ADLVVTAVAEGRQAAQGILDWLG 466 (467)
T ss_pred CCEEEECCcCC-----C----ccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999985 1 56788999999999999988763
No 60
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=5.4e-32 Score=298.39 Aligned_cols=343 Identities=15% Similarity=0.100 Sum_probs=223.4
Q ss_pred cccccccccccc--ccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHH
Q 010844 2 SLFKHLLRNPTA--KSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (499)
Q Consensus 2 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~ 79 (499)
-|+.-++|+|.+ +|+..|.++..+. ...|..+.+|..++...... + .+ ......++|+|||||||||+||.
T Consensus 375 p~p~~~grvCp~~~~Ce~~C~~~~~~~-pv~I~~ler~~~d~~~~~~~----~-~~-~~~~~~~kVaIIG~GPAGLsaA~ 447 (1006)
T PRK12775 375 IFPSICGRVCPQETQCEAQCIIAKKHE-SVGIGRLERFVGDNARAKPV----K-PP-RFSKKLGKVAICGSGPAGLAAAA 447 (1006)
T ss_pred ChHHHhcCcCCCCCCHHHhCcCCCCCC-CeeecHHHHHHHHHHHHcCC----C-CC-CCCCCCCEEEEECCCHHHHHHHH
Confidence 356778999998 8999999998775 48888899987665321110 0 11 11124579999999999999999
Q ss_pred hccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010844 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 80 ~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
+|++.|++|+|||+.+...... . .|..........+......+.. .++++..+.+.+. .++++...
T Consensus 448 ~La~~G~~VtV~E~~~~~GG~l-~----~gip~~rl~~e~~~~~~~~l~~-~Gv~~~~~~~vg~-----~~~~~~l~--- 513 (1006)
T PRK12775 448 DLVKYGVDVTVYEALHVVGGVL-Q----YGIPSFRLPRDIIDREVQRLVD-IGVKIETNKVIGK-----TFTVPQLM--- 513 (1006)
T ss_pred HHHHcCCcEEEEecCCCCccee-e----ccCCccCCCHHHHHHHHHHHHH-CCCEEEeCCccCC-----ccCHHHHh---
Confidence 9999999999999987543210 0 1111111111111222222333 5778776654322 23322210
Q ss_pred ccCCCceeeeeCCeEEEcCCCC-ccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeC
Q 010844 160 RTLEPWKFKISYDKLVIALGAE-ASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvG 237 (499)
....||+||||||+. |+.++|||.+ +.+++.. +.....+.. .....+. .......+++|+|||
T Consensus 514 -------~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~---~fL~~~~~~----~~~~~~~-~~~~~~~Gk~VvVIG 578 (1006)
T PRK12775 514 -------NDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSAN---EFLTRVNLM----GGDKFPF-LDTPISLGKSVVVIG 578 (1006)
T ss_pred -------hccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHH---HHHHHHHhc----Ccccccc-ccCCccCCCEEEEEC
Confidence 024699999999995 8889999963 2232222 222111100 0000000 000112457999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C
Q 010844 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q 312 (499)
Q Consensus 238 gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~ 312 (499)
||++|+|+|..+.+++. ..|+++.+. + -++....+ .+.+++.||+++.+ .+.++.. +
T Consensus 579 gG~tA~D~A~~a~rlGa-------------~~Vtiv~rr~~~em~a~~~e-----~~~a~eeGI~~~~~~~p~~i~~~~~ 640 (1006)
T PRK12775 579 AGNTAMDCLRVAKRLGA-------------PTVRCVYRRSEAEAPARIEE-----IRHAKEEGIDFFFLHSPVEIYVDAE 640 (1006)
T ss_pred CcHHHHHHHHHHHHcCC-------------CEEEEEeecCcccCCCCHHH-----HHHHHhCCCEEEecCCcEEEEeCCC
Confidence 99999999999888762 468888765 2 33332211 24567789999988 6677642 2
Q ss_pred ----eEEEC-----------------CC--cEEeeeEEEEcCCCCcch-hccc-CCCCCCCCCceeeCC-----CCCCCC
Q 010844 313 ----KLILN-----------------DG--TEVPYGLLVWSTGVGPST-LVKS-LDLPKSPGGRIGIDE-----WLRVPS 362 (499)
Q Consensus 313 ----~v~~~-----------------~g--~~i~~D~vi~a~G~~p~~-~~~~-~~l~~~~~G~i~vd~-----~l~~~~ 362 (499)
+|.+. +| .++++|.||+|+|+.|+. ++.. .++.++++|.|.||+ +++| +
T Consensus 641 G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T-s 719 (1006)
T PRK12775 641 GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST-N 719 (1006)
T ss_pred CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC-C
Confidence 23221 12 269999999999999995 3333 367788889999996 6888 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010844 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
.|+|||+|||+. | +.++..|+.+|+.||.+|...+..
T Consensus 720 ~pgVFAaGDv~~-----G----~~~vv~Ai~~Gr~AA~~I~~~L~~ 756 (1006)
T PRK12775 720 LPGVFAGGDIVT-----G----GATVILAMGAGRRAARSIATYLRL 756 (1006)
T ss_pred CCCEEEecCcCC-----C----ccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999984 2 678899999999999999999873
No 61
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.4e-32 Score=248.74 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=215.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc---------------cchhhhh-----ccCCC-----C--
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT---------------PLLASTC-----VGTLE-----F-- 113 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~---------------~~~~~~~-----~g~~~-----~-- 113 (499)
...+.+|||||-+|+++|+..++.|.++.|+|..-....+ ..+.... .|... +
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 4689999999999999999999999999999965221111 0000000 01111 0
Q ss_pred -------CccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 114 -------RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 114 -------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.....+..+.+..-....+.++.++..-+++.+-.|...+ + ....+++.+++||||.+|.+|+
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d---~------~~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVND---G------TKIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecC---C------eeEEEecceEEEEeCCccCCCC
Confidence 01111233333333344678889998888877655555444 1 1245889999999999999999
Q ss_pred CCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 010844 187 IHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKD 266 (499)
Q Consensus 187 ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~ 266 (499)
|||. +..+..... |++.+.| ++++|||+|++++|+|.-++.++
T Consensus 170 IpG~-E~gidSDgf-------------f~Lee~P----------kr~vvvGaGYIavE~Agi~~gLg------------- 212 (478)
T KOG0405|consen 170 IPGA-ELGIDSDGF-------------FDLEEQP----------KRVVVVGAGYIAVEFAGIFAGLG------------- 212 (478)
T ss_pred CCch-hhccccccc-------------cchhhcC----------ceEEEEccceEEEEhhhHHhhcC-------------
Confidence 9997 444443322 4444555 49999999999999999999988
Q ss_pred ceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcch--
Q 010844 267 YIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPST-- 337 (499)
Q Consensus 267 ~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~-- 337 (499)
.+++++-|. .+|..|++.++..+.+.++.+||++|.+ .++++... .+....|+...+|.++||+|..|++
T Consensus 213 -sethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 213 -SETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred -CeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCccc
Confidence 899999987 7999999999999999999999999988 67776442 3444566656699999999999994
Q ss_pred -hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 338 -LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 338 -~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
-+++.|+.++++|.|.||++.+| +.|+||++||++. + ..+.++|+.+|+.+|+.+-.
T Consensus 292 L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~g------k---~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 292 LNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTG------K---INLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred ccchhcceeeCCCCCEEEeccccC-CCCceEEeccccC------c---EecchHHHhhhhhHHHHhhc
Confidence 35667899999999999999999 9999999999993 3 56778899999999876543
No 62
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.98 E-value=4.1e-31 Score=263.33 Aligned_cols=299 Identities=20% Similarity=0.177 Sum_probs=191.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 140 (499)
..++|+|||||++|+++|..|++.|++|+|||+.+........ .........+. +......+.. .++.+..++.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~-~~~~~~~~~~~----~~~~~~~l~~-~~i~~~~~~~ 90 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF-GIPEFRIPIER----VREGVKELEE-AGVVFHTRTK 90 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee-cCcccccCHHH----HHHHHHHHHh-CCeEEecCcE
Confidence 3468999999999999999999999999999998765432111 00000111111 1112222333 3677665533
Q ss_pred E-EEEC----CCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC-CccCCCCCCccc-cCccCCCHHHHHHHHHHHHHH
Q 010844 141 A-GIDT----DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKE-NATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 141 ~-~id~----~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~ 213 (499)
. .++. ....+...... .+...+.||+||||||+ .+..|++||.+. .++. .......+.......
T Consensus 91 v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~--~~~~~~~~~~~~~~~ 161 (352)
T PRK12770 91 VCCGEPLHEEEGDEFVERIVS-------LEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYS--ALEYLFRIRAAKLGY 161 (352)
T ss_pred EeeccccccccccccccccCC-------HHHHHhhCCEEEEEeCCCCCCcCCCCCccccCcee--HHHHHHHhhhccccc
Confidence 3 3322 11111100000 00124789999999999 477888998742 2221 111111111100000
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCCcCCCCCHHHHHHHHH
Q 010844 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEILSSFDDRLRHYATT 292 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~~l~~~~~~~~~~~~~ 292 (499)
+.....| ....++++|||+|++|+|+|..+...+ .+ |+++++...... .......+
T Consensus 162 ~~~~~~~------~~~g~~vvViG~G~~g~e~A~~l~~~g--------------~~~Vtvi~~~~~~~~---~~~~~~~~ 218 (352)
T PRK12770 162 LPWEKVP------PVEGKKVVVVGAGLTAVDAALEAVLLG--------------AEKVYLAYRRTINEA---PAGKYEIE 218 (352)
T ss_pred ccccccc------ccCCCEEEEECCCHHHHHHHHHHHHcC--------------CCeEEEEeecchhhC---CCCHHHHH
Confidence 0000111 112469999999999999999998765 54 999987532111 11134456
Q ss_pred HHHhCCCEEEeC-ceEEEeCC----eEEE--------------------CCCcEEeeeEEEEcCCCCcch-hccc-CCCC
Q 010844 293 QLSKSGVRLVRG-IVKDVDSQ----KLIL--------------------NDGTEVPYGLLVWSTGVGPST-LVKS-LDLP 345 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~----~v~~--------------------~~g~~i~~D~vi~a~G~~p~~-~~~~-~~l~ 345 (499)
.|+++||+++++ .+.+++++ .+.+ .+++++++|.+|+++|++|++ +... ++++
T Consensus 219 ~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~ 298 (352)
T PRK12770 219 RLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIE 298 (352)
T ss_pred HHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCce
Confidence 688999999998 78888653 2222 123579999999999999995 4444 7888
Q ss_pred CCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 346 KSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 346 ~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++++|+|.||+++++ +.|+|||+|||+. + +..+..|++||+.+|.+|...+.
T Consensus 299 ~~~~g~i~vd~~~~t-~~~~vyaiGD~~~-----~----~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 299 LNRKGEIVVDEKHMT-SREGVFAAGDVVT-----G----PSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred ecCCCcEeeCCCccc-CCCCEEEEccccc-----C----cchHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999998 8999999999995 1 56788999999999999988875
No 63
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.98 E-value=1e-30 Score=272.78 Aligned_cols=282 Identities=18% Similarity=0.178 Sum_probs=198.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----chhhhhc-cCCCCCccccchhhhccccccCCCeE
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----LLASTCV-GTLEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
...++|+|||||+||++||.+|++.|++|+||++.. ..+. .+..... ......++...+... +. ..++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~--GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~-~~gv~ 282 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF--GGQVLDTMGIENFISVPETEGPKLAAALEEH---VK-EYDVD 282 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--CCeeeccCcccccCCCCCCCHHHHHHHHHHH---HH-HCCCE
Confidence 346899999999999999999999999999998751 1111 0110000 001111222222222 22 24566
Q ss_pred EEE-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHHHHHHH
Q 010844 135 FFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQEIRRKL 210 (499)
Q Consensus 135 ~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~~~~~~ 210 (499)
+.. .+|++++.....+.+... ++ .++.||+||+|||+.++.+++||..++. .......+ .
T Consensus 283 i~~~~~V~~I~~~~~~~~V~~~-~g--------~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~-----~-- 346 (517)
T PRK15317 283 IMNLQRASKLEPAAGLIEVELA-NG--------AVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCD-----G-- 346 (517)
T ss_pred EEcCCEEEEEEecCCeEEEEEC-CC--------CEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccC-----c--
Confidence 554 589999887554444321 12 3789999999999999999999864321 11100000 0
Q ss_pred HHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHH
Q 010844 211 LLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYA 290 (499)
Q Consensus 211 ~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~ 290 (499)
...+.++|+|||||++|+|+|..|+..+ .+|+++++.+.+.. ...+
T Consensus 347 ---------------~~~~gk~VvVVGgG~~g~e~A~~L~~~~--------------~~Vtlv~~~~~l~~-----~~~l 392 (517)
T PRK15317 347 ---------------PLFKGKRVAVIGGGNSGVEAAIDLAGIV--------------KHVTVLEFAPELKA-----DQVL 392 (517)
T ss_pred ---------------hhcCCCEEEEECCCHHHHHHHHHHHhcC--------------CEEEEEEECccccc-----cHHH
Confidence 0123469999999999999999999876 89999998743321 2345
Q ss_pred HHHHHh-CCCEEEeC-ceEEEeCC-----eEEEC---CC--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC
Q 010844 291 TTQLSK-SGVRLVRG-IVKDVDSQ-----KLILN---DG--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW 357 (499)
Q Consensus 291 ~~~l~~-~gV~v~~~-~v~~v~~~-----~v~~~---~g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~ 357 (499)
.+.+.+ .||+++.+ .+.++.++ .+.+. +| ++++||.+++++|.+|+ .+++.. +.++++|+|.||++
T Consensus 393 ~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~ 471 (517)
T PRK15317 393 QDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDAR 471 (517)
T ss_pred HHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcC
Confidence 556665 59999999 88888765 25554 23 36999999999999998 476655 77788899999999
Q ss_pred CCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 358 LRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 358 l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|| +.|+|||+|||+..+ .+.+..|+.+|..||.++...+.
T Consensus 472 l~T-s~p~IyAaGDv~~~~--------~k~~~~A~~eG~~Aa~~~~~~l~ 512 (517)
T PRK15317 472 GAT-SVPGVFAAGDCTTVP--------YKQIIIAMGEGAKAALSAFDYLI 512 (517)
T ss_pred CCC-CCCCEEECccccCCC--------CCEEEEhhhhHHHHHHHHHHHHh
Confidence 998 999999999999631 46678899999999999988875
No 64
>PRK13984 putative oxidoreductase; Provisional
Probab=99.97 E-value=3.5e-31 Score=281.92 Aligned_cols=341 Identities=18% Similarity=0.162 Sum_probs=208.9
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010844 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|.--++|+|.++|+..|.+.....| ..+..+.++..+........ .........+.++|+|||+|+||+++|..|+
T Consensus 228 ~~~~~g~vC~~~Ce~~C~~~~~~~~-~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~ 303 (604)
T PRK13984 228 LSMVCGRVCTHKCETVCSIGHRGEP-IAIRWLKRYIVDNVPVEKYS---EILDDEPEKKNKKVAIVGSGPAGLSAAYFLA 303 (604)
T ss_pred ccchhhCcCCchHHHhhcccCCCCC-eEeCcHHHHHHhHHHHcCcc---cccCCCcccCCCeEEEECCCHHHHHHHHHHH
Confidence 3456889999999999999976654 66667776665543211110 0001112234678999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010844 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+++........ ......+ +.++ +......+. ..++.++.+.....+ +..+.
T Consensus 304 ~~G~~v~vie~~~~~gG~~~~-~i~~~~~-~~~~---~~~~~~~~~-~~gv~~~~~~~v~~~-----~~~~~-------- 364 (604)
T PRK13984 304 TMGYEVTVYESLSKPGGVMRY-GIPSYRL-PDEA---LDKDIAFIE-ALGVKIHLNTRVGKD-----IPLEE-------- 364 (604)
T ss_pred HCCCeEEEEecCCCCCceEee-cCCcccC-CHHH---HHHHHHHHH-HCCcEEECCCEeCCc-----CCHHH--------
Confidence 999999999998765322111 0000001 1111 111111122 246666554332211 11111
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcCh
Q 010844 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~ 240 (499)
....||+||+|||+. ++.+++||.+. .++ ...+....+...+ .... ......++|+|||||+
T Consensus 365 ----~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~--~a~~~l~~~~~~~----~~~~------~~~~~~k~VvVIGGG~ 428 (604)
T PRK13984 365 ----LREKHDAVFLSTGFTLGRSTRIPGTDHPDVI--QALPLLREIRDYL----RGEG------PKPKIPRSLVVIGGGN 428 (604)
T ss_pred ----HHhcCCEEEEEcCcCCCccCCCCCcCCcCeE--eHHHHHHHHHhhh----ccCC------CcCCCCCcEEEECCch
Confidence 135799999999987 57788999742 222 1222222222111 0000 0011246999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--
Q 010844 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-- 312 (499)
Q Consensus 241 ~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-- 312 (499)
+|+|+|..+.+++.. .+ ...+|+++... ..++....+ +.+ +.+.||+++.+ .+.++.. +
T Consensus 429 ~g~e~A~~l~r~~~~----~~----g~~~V~v~~~~r~~~~~~~~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v 495 (604)
T PRK13984 429 VAMDIARSMARLQKM----EY----GEVNVKVTSLERTFEEMPADMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKV 495 (604)
T ss_pred HHHHHHHHHHhcccc----cc----CceEEEEeccccCcccCCCCHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEE
Confidence 999999999876410 00 11467776433 233333222 222 34579999987 6666542 1
Q ss_pred -eEEEC-------------------CCcEEeeeEEEEcCCCCcc-hhcc-cC--CCCCCCCCceeeCCCCCCCCCCCeEE
Q 010844 313 -KLILN-------------------DGTEVPYGLLVWSTGVGPS-TLVK-SL--DLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 313 -~v~~~-------------------~g~~i~~D~vi~a~G~~p~-~~~~-~~--~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
+|.+. ++.++++|.||+|+|+.|+ .++. .+ +++. ++|+|.||+++|| +.|+|||
T Consensus 496 ~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfA 573 (604)
T PRK13984 496 KGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFA 573 (604)
T ss_pred EEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEE
Confidence 22221 1247999999999999998 3433 22 3444 4688999999999 9999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||+.. + ....|+.+|+.||.+|.+++.
T Consensus 574 aGD~~~~---------~-~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 574 GGDIVHG---------P-DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred ecCcCCc---------h-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999951 3 357799999999999998875
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=4.4e-31 Score=282.68 Aligned_cols=342 Identities=16% Similarity=0.149 Sum_probs=219.3
Q ss_pred cccccccccc--cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010844 3 LFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
|+--++|+|. ++|+.+|.++..+. ...|..+.+|..+........+ .++. .....++|+|||||+|||++|..
T Consensus 271 ~p~~~grvCp~~~~Ce~~C~~~~~~~-~v~I~~l~r~~~d~~~~~~~~~---~~~~-~~~~~~~VaIIGaGpAGLsaA~~ 345 (654)
T PRK12769 271 LPEITGRVCPQDRLCEGACTLRDEYG-AVTIGNIERYISDQALAKGWRP---DLSQ-VTKSDKRVAIIGAGPAGLACADV 345 (654)
T ss_pred chhHhcccCCCCCChHHhccCCCCCC-CeecCHHHHHHHHHHHHhCCCC---CCcc-cccCCCEEEEECCCHHHHHHHHH
Confidence 5567899998 58999999997765 4888888888766532111111 1111 11245799999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccc-hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCcc
Q 010844 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP-IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDEL 159 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~ 159 (499)
|++.|++|+|||+.+....... . +..... +... +......+ ...++++..+..... .+.++.
T Consensus 346 L~~~G~~V~V~E~~~~~GG~l~-~----gip~~~-l~~~~~~~~~~~~-~~~Gv~~~~~~~v~~-----~i~~~~----- 408 (654)
T PRK12769 346 LARNGVAVTVYDRHPEIGGLLT-F----GIPAFK-LDKSLLARRREIF-SAMGIEFELNCEVGK-----DISLES----- 408 (654)
T ss_pred HHHCCCeEEEEecCCCCCceee-e----cCCCcc-CCHHHHHHHHHHH-HHCCeEEECCCEeCC-----cCCHHH-----
Confidence 9999999999999876433211 0 111111 1111 11111112 224666654432211 111111
Q ss_pred ccCCCceeeeeCCeEEEcCCCCc-cCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeC
Q 010844 160 RTLEPWKFKISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVG 237 (499)
Q Consensus 160 ~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvG 237 (499)
....||+|++|||+.. ..+++||.+. .++.. ..........+ +....... .+......++|+|||
T Consensus 409 -------~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a--~~~l~~~~~~~---~~~~~~~~-~~~~~~~gk~VvVIG 475 (654)
T PRK12769 409 -------LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDA--LPFLIANTKQV---MGLEELPE-EPFINTAGLNVVVLG 475 (654)
T ss_pred -------HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEh--HHHHHHHHhhh---ccCccccc-cccccCCCCeEEEEC
Confidence 1246999999999864 4567888642 22211 11000000000 00000000 000012346999999
Q ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC---
Q 010844 238 GGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--- 311 (499)
Q Consensus 238 gG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--- 311 (499)
||++|+|+|..+.+.+. .+|+++++. . .+|..+.. .+.+++.||+++.+ .+.++..
T Consensus 476 gG~~a~d~A~~a~r~ga-------------~~Vt~i~~~~~~~~~~~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~ 537 (654)
T PRK12769 476 GGDTAMDCVRTALRHGA-------------SNVTCAYRRDEANMPGSKKE-----VKNAREEGANFEFNVQPVALELNEQ 537 (654)
T ss_pred CcHHHHHHHHHHHHcCC-------------CeEEEeEecCCCCCCCCHHH-----HHHHHHcCCeEEeccCcEEEEECCC
Confidence 99999999998877662 479999875 3 35544332 34577889999988 7777742
Q ss_pred C---eEEE---------CCC-----------cEEeeeEEEEcCCCCcch--hcccCCCCCCCCCceeeCC----CCCCCC
Q 010844 312 Q---KLIL---------NDG-----------TEVPYGLLVWSTGVGPST--LVKSLDLPKSPGGRIGIDE----WLRVPS 362 (499)
Q Consensus 312 ~---~v~~---------~~g-----------~~i~~D~vi~a~G~~p~~--~~~~~~l~~~~~G~i~vd~----~l~~~~ 362 (499)
+ +|++ .+| .++++|+||+|+|+.|+. +++.++++++++|.|.||+ +++| +
T Consensus 538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~T-s 616 (654)
T PRK12769 538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQT-S 616 (654)
T ss_pred CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCccc-C
Confidence 2 2333 112 269999999999999983 6777889999999999986 4788 9
Q ss_pred CCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 363 VQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 363 ~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|+|||+||++. | +.++..|+.+|+.||.+|..++.
T Consensus 617 ~~gVfAaGD~~~-----g----~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 617 NPKIFAGGDAVR-----G----ADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCCEEEcCCcCC-----C----CcHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999985 2 67889999999999999998875
No 66
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.97 E-value=5.4e-31 Score=271.84 Aligned_cols=347 Identities=19% Similarity=0.195 Sum_probs=212.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010844 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+--++|+|.|+|+..|.++....+ +.+..+.++..++........ ... ......++|+|||||++|+++|..|+
T Consensus 89 ~p~~~grvC~~~Ce~~C~~~~~~~~-v~I~~l~r~~~~~~~~~~~~~---~~~-~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 89 FPEFTGRVCPAPCEGACTLGISEDP-VGIKSIERIIIDKGFQEGWVQ---PRP-PSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred chhHHhCcCChhhHHhccCCCCCCC-cchhHHHHHHHHHHHHcCCCC---CCC-CcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 4556899999999999999977644 777777777754322110000 010 11123479999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010844 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|||+.+....... +.......+ ..+ +......+. ..+++++.+.....+. ..+
T Consensus 164 ~~g~~V~v~e~~~~~gG~l~-~gip~~~~~-~~~---~~~~~~~~~-~~Gv~~~~~~~v~~~~-----~~~--------- 223 (485)
T TIGR01317 164 RAGHTVTVFEREDRCGGLLM-YGIPNMKLD-KAI---VDRRIDLLS-AEGIDFVTNTEIGVDI-----SAD--------- 223 (485)
T ss_pred HcCCeEEEEecCCCCCceee-ccCCCccCC-HHH---HHHHHHHHH-hCCCEEECCCEeCCcc-----CHH---------
Confidence 99999999999876432110 000000001 111 111111122 2567776654432211 111
Q ss_pred CCceeeeeCCeEEEcCCCC-ccCCCCCCccc-cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcCh
Q 010844 163 EPWKFKISYDKLVIALGAE-ASTFGIHGVKE-NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGP 240 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~ 240 (499)
.....||.||+|||+. +..+++||.+. .++.. .+...........-....++ ......++|+|||||+
T Consensus 224 ---~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~---~~~l~~~~~~~~~~~~~~~~----~~~~~gk~VvViGgG~ 293 (485)
T TIGR01317 224 ---ELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYA---MEFLPSATKALLGKDFKDII----FIKAKGKKVVVIGGGD 293 (485)
T ss_pred ---HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeH---HHHHHHHhhhhccccccccc----cccCCCCEEEEECCcH
Confidence 1245799999999998 78889999642 22221 11111111100000000000 0012457999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC---------CCCHH--HHHHHHHHHHhCCCEEE-eC-ce
Q 010844 241 TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS---------SFDDR--LRHYATTQLSKSGVRLV-RG-IV 306 (499)
Q Consensus 241 ~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~---------~~~~~--~~~~~~~~l~~~gV~v~-~~-~v 306 (499)
+|+|+|..+.+.+. .+|++++.. ..+. .++.. ......+..+..||+++ .+ .+
T Consensus 294 ~g~d~a~~a~~~ga-------------~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~ 360 (485)
T TIGR01317 294 TGADCVGTSLRHGA-------------ASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILT 360 (485)
T ss_pred HHHHHHHHHHHcCC-------------CEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCc
Confidence 99999888776652 579999865 2221 11111 22223344444576543 33 45
Q ss_pred EEEeC---C---eEEE--------CCC-----------cEEeeeEEEEcCCCC-cc-hhcccCCCCCCCCCceee-CCCC
Q 010844 307 KDVDS---Q---KLIL--------NDG-----------TEVPYGLLVWSTGVG-PS-TLVKSLDLPKSPGGRIGI-DEWL 358 (499)
Q Consensus 307 ~~v~~---~---~v~~--------~~g-----------~~i~~D~vi~a~G~~-p~-~~~~~~~l~~~~~G~i~v-d~~l 358 (499)
.++.. + ++.+ ++| .++++|+||+++|+. |+ .++..++++++++|++.+ |+++
T Consensus 361 ~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~ 440 (485)
T TIGR01317 361 KEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDY 440 (485)
T ss_pred EEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCc
Confidence 55532 1 1221 123 279999999999996 76 577778888888898854 5778
Q ss_pred CCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 359 RVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+| +.|+|||+|||+. | +.++..|+.+|+.||.+|..++.
T Consensus 441 ~T-s~~gVfAaGD~~~-----g----~~~~~~Av~~G~~AA~~i~~~L~ 479 (485)
T TIGR01317 441 ST-SIPGVFAAGDCRR-----G----QSLIVWAINEGRKAAAAVDRYLM 479 (485)
T ss_pred eE-CCCCEEEeeccCC-----C----cHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 9999999999984 2 56788999999999999999986
No 67
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.6e-30 Score=238.98 Aligned_cols=290 Identities=23% Similarity=0.328 Sum_probs=207.3
Q ss_pred CCCCCcEEEECCchHHHHHHHhccCCCCeEEEEcC---CCCcccccchhhhhc--------------------------c
Q 010844 59 ANEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSP---RNHMVFTPLLASTCV--------------------------G 109 (499)
Q Consensus 59 ~~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~---~~~~~~~~~~~~~~~--------------------------g 109 (499)
.+-.++.+|||||.+||+||++++..|.+|.++|- .+. .-.+.+.+.+. |
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~-GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQ-GTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCC-CCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 34568999999999999999999999999999982 221 11111111111 1
Q ss_pred CCCCC-ccccchhhhccc-------ccc-------CCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeE
Q 010844 110 TLEFR-SVAEPIARIQPA-------ISR-------EPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKL 174 (499)
Q Consensus 110 ~~~~~-~~~~~~~~~~~~-------~~~-------~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~L 174 (499)
.--.+ .+..+++.+.+. +.- ...+.++++..+.+|+ ..+...+ ..++++.++++++
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~--h~I~at~-------~~gk~~~~ta~~f 165 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDP--HKIKATN-------KKGKERFLTAENF 165 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeeccc--ceEEEec-------CCCceEEeecceE
Confidence 10011 122222222111 110 0122222222223322 2333222 1234568999999
Q ss_pred EEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHH
Q 010844 175 VIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIM 254 (499)
Q Consensus 175 ViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~ 254 (499)
|||||.+|++|+|||..++.++..++ |.++..|+ +-+|||+|++++|+|+.|+.++
T Consensus 166 vIatG~RPrYp~IpG~~Ey~ITSDDl-------------Fsl~~~PG----------kTLvVGa~YVaLECAgFL~gfg- 221 (503)
T KOG4716|consen 166 VIATGLRPRYPDIPGAKEYGITSDDL-------------FSLPYEPG----------KTLVVGAGYVALECAGFLKGFG- 221 (503)
T ss_pred EEEecCCCCCCCCCCceeeeeccccc-------------ccccCCCC----------ceEEEccceeeeehhhhHhhcC-
Confidence 99999999999999988888877654 77788887 8999999999999999999988
Q ss_pred HHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC----ceEEEeCCeEEE--C---C--CcEEe
Q 010844 255 RDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG----IVKDVDSQKLIL--N---D--GTEVP 323 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~----~v~~v~~~~v~~--~---~--g~~i~ 323 (499)
.+||+..|+-+|..|+.++.+.+.+.++++||++... +|+.+++..+.+ + . +-+-+
T Consensus 222 -------------~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 222 -------------YDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred -------------CCcEEEEEEeecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccch
Confidence 8999999998899999999999999999999999876 466666664322 1 1 22457
Q ss_pred eeEEEEcCCCCcch---hcccCCCCCC-CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHH
Q 010844 324 YGLLVWSTGVGPST---LVKSLDLPKS-PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLF 399 (499)
Q Consensus 324 ~D~vi~a~G~~p~~---~~~~~~l~~~-~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa 399 (499)
+|+|+||+|..+.. -+...|+..+ ..|.|.||+.-++ +.|+|||+||+.. +. |.+...|++.|+.+|
T Consensus 289 ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~vp~vyAvGDIl~-----~k---pELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 289 YDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-NVPYVYAVGDILE-----DK---PELTPVAIQSGRLLA 359 (503)
T ss_pred hhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-CCCceEEecceec-----CC---cccchhhhhhchHHH
Confidence 99999999999973 2344566664 4578999999998 9999999999995 43 888999999999999
Q ss_pred HHHHH
Q 010844 400 SLLNR 404 (499)
Q Consensus 400 ~~i~~ 404 (499)
+.|-.
T Consensus 360 ~Rlf~ 364 (503)
T KOG4716|consen 360 RRLFA 364 (503)
T ss_pred HHHhc
Confidence 98743
No 68
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.97 E-value=4.9e-30 Score=273.41 Aligned_cols=342 Identities=16% Similarity=0.130 Sum_probs=220.3
Q ss_pred ccccccccccc--cccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHH
Q 010844 2 SLFKHLLRNPT--AKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMK 79 (499)
Q Consensus 2 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~ 79 (499)
-|+--++|+|. ++|+..|.+...+. ...+..+.+|..++.......+.. ++ .....++|+|||||+|||++|.
T Consensus 253 p~p~~~grvCp~~~~Ce~~C~~~~~~~-~v~i~~l~r~~~d~~~~~~~~~~~---~~-~~~~~kkVaIIG~GpaGl~aA~ 327 (639)
T PRK12809 253 SLPEICGRVCPQDRLCEGACTLKDHSG-AVSIGNLERYITDTALAMGWRPDV---SK-VVPRSEKVAVIGAGPAGLGCAD 327 (639)
T ss_pred CcchhhcccCCCCCChHHhccCCCcCC-CcChhHHHHHHHHHHHHhCCCCCC---Cc-ccCCCCEEEEECcCHHHHHHHH
Confidence 35667899997 68999999997765 588888888877654211111111 11 1124689999999999999999
Q ss_pred hccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccc-hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCc
Q 010844 80 GIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEP-IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDE 158 (499)
Q Consensus 80 ~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~ 158 (499)
.|++.|++|+|+|+.+...... . .|..... +... +..... .....++++..+.... +.+.+..
T Consensus 328 ~L~~~G~~Vtv~e~~~~~GG~l-~----~gip~~~-l~~~~~~~~~~-~~~~~Gv~~~~~~~v~-----~~~~~~~---- 391 (639)
T PRK12809 328 ILARAGVQVDVFDRHPEIGGML-T----FGIPPFK-LDKTVLSQRRE-IFTAMGIDFHLNCEIG-----RDITFSD---- 391 (639)
T ss_pred HHHHcCCcEEEEeCCCCCCCee-e----ccCCccc-CCHHHHHHHHH-HHHHCCeEEEcCCccC-----CcCCHHH----
Confidence 9999999999999988643221 0 1111111 1111 111111 1223567765543221 1122211
Q ss_pred cccCCCceeeeeCCeEEEcCCCCc-cCCCCCCccc-cCccCCCHHHHHHHHHHHHHH-HhhcCCCCCCHHHHhccccEEE
Q 010844 159 LRTLEPWKFKISYDKLVIALGAEA-STFGIHGVKE-NATFLREVHHAQEIRRKLLLN-LMLSDVPGISEEEKSRLLHCVV 235 (499)
Q Consensus 159 ~~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~vvV 235 (499)
....||+|++|||+.. ..+++||.+. .++. +..+....... +....... .+......++|+|
T Consensus 392 --------l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~------a~~~l~~~~~~~~~~~~~~~-~~~~~~~gk~vvV 456 (639)
T PRK12809 392 --------LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ------ALPFLTAHTRQLMGLPESEE-YPLTDVEGKRVVV 456 (639)
T ss_pred --------HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEe------HHHHHHHHHHhhccCccccc-cccccCCCCeEEE
Confidence 1346999999999874 4567888642 2221 11111111000 00000000 0001124579999
Q ss_pred eCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC-
Q 010844 236 VGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS- 311 (499)
Q Consensus 236 vGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~- 311 (499)
||+|.+++|+|..+.+.+. .+||++++. + .+|..+.++. .+++.||+++.+ .+.++..
T Consensus 457 iGgG~~a~d~a~~~~~~Ga-------------~~Vt~v~rr~~~~~~~~~~e~~-----~a~~eGv~~~~~~~~~~i~~~ 518 (639)
T PRK12809 457 LGGGDTTMDCLRTSIRLNA-------------ASVTCAYRRDEVSMPGSRKEVV-----NAREEGVEFQFNVQPQYIACD 518 (639)
T ss_pred ECCcHHHHHHHHHHHHcCC-------------CeEEEeeecCcccCCCCHHHHH-----HHHHcCCeEEeccCCEEEEEC
Confidence 9999999999988777652 479999975 3 3555433332 356789999988 7777752
Q ss_pred --Ce---EEE---C------CC-----------cEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeCC----CCCC
Q 010844 312 --QK---LIL---N------DG-----------TEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGIDE----WLRV 360 (499)
Q Consensus 312 --~~---v~~---~------~g-----------~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd~----~l~~ 360 (499)
+. +.+ + +| .++++|.||+|+|+.|+ .+++.++++++++|+|.||+ ++||
T Consensus 519 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~T 598 (639)
T PRK12809 519 EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQT 598 (639)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCccc
Confidence 22 222 1 12 36899999999999997 36677788888899999986 4788
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.|+|||+|||+. | +.++..|+.+|+.||++|..++.
T Consensus 599 -s~~gVfA~GD~~~-----g----~~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 599 -HLKKVFAGGDAVH-----G----ADLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred -CCCCEEEcCCCCC-----C----chHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999985 2 66789999999999999999886
No 69
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=1.4e-29 Score=236.73 Aligned_cols=287 Identities=22% Similarity=0.293 Sum_probs=211.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc----------ch----------hh-hhccCCCCCccccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP----------LL----------AS-TCVGTLEFRSVAEP 119 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~----------~~----------~~-~~~g~~~~~~~~~~ 119 (499)
..+||+|||+||+|..||.+.++.|++.++||++..+..+- ++ .+ .....++...+..+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 46899999999999999999999999999999976543321 11 10 00001111111111
Q ss_pred --------------hhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 120 --------------IARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 120 --------------~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+..-...+.+..++.++.+.-.-+++. .|.+...+ ++...+...++||||||.- +
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~d-------g~~~ii~aKnIiiATGSeV--~ 186 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKID-------GEDQIIKAKNIIIATGSEV--T 186 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccC-------CCceEEeeeeEEEEeCCcc--C
Confidence 211122334457788888887777765 45544422 2246899999999999963 2
Q ss_pred CCCCcc--ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCC
Q 010844 186 GIHGVK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSH 263 (499)
Q Consensus 186 ~ipG~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~ 263 (499)
++||+. +..+...+ .+ +.+.+.|. +++|||+|.+|+|+..-..+++
T Consensus 187 ~~PGI~IDekkIVSSt--gA----------LsL~~vPk----------~~~viG~G~IGLE~gsV~~rLG---------- 234 (506)
T KOG1335|consen 187 PFPGITIDEKKIVSST--GA----------LSLKEVPK----------KLTVIGAGYIGLEMGSVWSRLG---------- 234 (506)
T ss_pred CCCCeEecCceEEecC--Cc----------cchhhCcc----------eEEEEcCceeeeehhhHHHhcC----------
Confidence 345652 32222111 11 34445564 9999999999999999999988
Q ss_pred CCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC---e--EEECC---C--cEEeeeEEEEcC
Q 010844 264 VKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ---K--LILND---G--TEVPYGLLVWST 331 (499)
Q Consensus 264 ~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~---~--v~~~~---g--~~i~~D~vi~a~ 331 (499)
.+||+|+.. ++.+.++.++++.+++.|.++|++++++ +|...+.+ . |.+.+ + ++++||.+++++
T Consensus 235 ----seVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsi 310 (506)
T KOG1335|consen 235 ----SEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSI 310 (506)
T ss_pred ----CeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEc
Confidence 899999985 7889999999999999999999999999 88887653 2 33332 2 579999999999
Q ss_pred CCCcch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 332 GVGPST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 332 G~~p~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|.+|-+ -+++.|++.|++|+|.||..++| .+||||++||+.. | |++++.|..||..+.+.|..
T Consensus 311 GRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~~-----g----pMLAhkAeeegI~~VE~i~g 376 (506)
T KOG1335|consen 311 GRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVTL-----G----PMLAHKAEEEGIAAVEGIAG 376 (506)
T ss_pred cCcccccCCChhhcccccccccceeccccccc-cCCceEEecccCC-----c----chhhhhhhhhchhheeeecc
Confidence 999963 35667888899999999999999 9999999999995 2 99999999999998887653
No 70
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.96 E-value=1e-28 Score=260.44 Aligned_cols=331 Identities=18% Similarity=0.167 Sum_probs=209.4
Q ss_pred cccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhcc
Q 010844 3 LFKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGID 82 (499)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~ 82 (499)
|+..++|+|.|+|+..|.|...+.+ ..+..+.++..+...... . ..+.......++|+|||||++||++|..|+
T Consensus 84 ~~~~~grvc~~~ce~~C~r~~~~~~-v~i~~l~r~~~~~~~~~~---~--~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~ 157 (564)
T PRK12771 84 FPAVMGRVCYHPCESGCNRGQVDDA-VGINAVERFLGDYAIANG---W--KFPAPAPDTGKRVAVIGGGPAGLSAAYHLR 157 (564)
T ss_pred cchHhhCcCCchhHHhccCCCCCCC-cCHHHHHHHHHHHHHHcC---C--CCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 5667899999999999999976654 555556666433221100 0 011111234578999999999999999999
Q ss_pred CCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccC
Q 010844 83 TSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTL 162 (499)
Q Consensus 83 ~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 162 (499)
+.|++|+|+|+.+.+..... .......+..+.....+.. + ...++.+..+...+.+. ..+.
T Consensus 158 ~~G~~V~v~e~~~~~GG~l~-~gip~~~~~~~~~~~~l~~----~-~~~Gv~~~~~~~~~~~~-----~~~~-------- 218 (564)
T PRK12771 158 RMGHAVTIFEAGPKLGGMMR-YGIPAYRLPREVLDAEIQR----I-LDLGVEVRLGVRVGEDI-----TLEQ-------- 218 (564)
T ss_pred HCCCeEEEEecCCCCCCeee-ecCCCccCCHHHHHHHHHH----H-HHCCCEEEeCCEECCcC-----CHHH--------
Confidence 99999999999876543211 1111011111111111111 1 12455544332111111 0000
Q ss_pred CCceeeeeCCeEEEcCCCCc-cCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChH
Q 010844 163 EPWKFKISYDKLVIALGAEA-STFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPT 241 (499)
Q Consensus 163 ~~~~~~i~yd~LViAtG~~~-~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~ 241 (499)
....||++|+|||+.. ....++|.+.. ....+..+...... .. .....++|+|||+|.+
T Consensus 219 ----~~~~~D~Vi~AtG~~~~~~~~i~g~~~~-----gv~~~~~~l~~~~~-~~----------~~~~gk~v~ViGgg~~ 278 (564)
T PRK12771 219 ----LEGEFDAVFVAIGAQLGKRLPIPGEDAA-----GVLDAVDFLRAVGE-GE----------PPFLGKRVVVIGGGNT 278 (564)
T ss_pred ----HHhhCCEEEEeeCCCCCCcCCCCCCccC-----CcEEHHHHHHHhhc-cC----------CcCCCCCEEEECChHH
Confidence 1235999999999874 44577775321 11111111111100 00 0123469999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe-----
Q 010844 242 GVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK----- 313 (499)
Q Consensus 242 gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~----- 313 (499)
|+|++..+.+++. .+|+++++.. .++.....+ +...+.||+++.+ .+.++..+.
T Consensus 279 a~d~a~~a~~lga-------------~~v~ii~r~~~~~~~~~~~~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~ 340 (564)
T PRK12771 279 AMDAARTARRLGA-------------EEVTIVYRRTREDMPAHDEEI-----EEALREGVEINWLRTPVEIEGDENGATG 340 (564)
T ss_pred HHHHHHHHHHcCC-------------CEEEEEEecCcccCCCCHHHH-----HHHHHcCCEEEecCCcEEEEcCCCCEEE
Confidence 9999987776652 5788888752 344443333 2345679999988 788876431
Q ss_pred E---EE------CCC---------cEEeeeEEEEcCCCCcc-hhccc-CCCCCCCCCceeeCC-CCCCCCCCCeEEeccc
Q 010844 314 L---IL------NDG---------TEVPYGLLVWSTGVGPS-TLVKS-LDLPKSPGGRIGIDE-WLRVPSVQDVFAVGDC 372 (499)
Q Consensus 314 v---~~------~~g---------~~i~~D~vi~a~G~~p~-~~~~~-~~l~~~~~G~i~vd~-~l~~~~~~~Ifa~GD~ 372 (499)
+ .+ .+| .++++|+||+|+|+.|+ .++.+ .++. +++|+|.||+ +++| +.|+|||+|||
T Consensus 341 v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~ 418 (564)
T PRK12771 341 LRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMT-GRPGVFAGGDM 418 (564)
T ss_pred EEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccC-CCCCEEeccCc
Confidence 1 11 112 37999999999999998 46664 4676 7789999998 5666 99999999999
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 373 SGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 373 a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+. | +.++..|++||+.+|.+|.+.+.
T Consensus 419 ~~-----g----~~~v~~Av~~G~~aA~~i~~~L~ 444 (564)
T PRK12771 419 VP-----G----PRTVTTAIGHGKKAARNIDAFLG 444 (564)
T ss_pred CC-----C----chHHHHHHHHHHHHHHHHHHHHc
Confidence 84 2 67899999999999999999986
No 71
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.95 E-value=2.4e-26 Score=235.00 Aligned_cols=291 Identities=25% Similarity=0.284 Sum_probs=223.8
Q ss_pred EEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccc--cchhhhhccCCCCCccccchhhhccccccCCCeEE-EEEE
Q 010844 65 VVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFT--PLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF-FLSH 139 (499)
Q Consensus 65 VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 139 (499)
++|||+|++|+++|..|++. +.+++++..++...|. +....+..+............ . . ...++.. ...+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~~i~~~~~~~ 75 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-F---N-RATGIDVRTGTE 75 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-h---H-HhhCCEEeeCCE
Confidence 58999999999999988774 4678877776554443 444444444333333322222 1 1 1234444 4468
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCC
Q 010844 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDV 219 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (499)
|+.+|++.+.+.+.+ .++.||+||+|||+.+..++ .......+.++..+++..++.....
T Consensus 76 v~~id~~~~~v~~~~------------g~~~yd~LvlatGa~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------- 135 (415)
T COG0446 76 VTSIDPENKVVLLDD------------GEIEYDYLVLATGARPRPPP-ISDWEGVVTLRLREDAEALKGGAEP------- 135 (415)
T ss_pred EEEecCCCCEEEECC------------CcccccEEEEcCCCcccCCC-ccccCceEEECCHHHHHHHHHHHhc-------
Confidence 999999999998876 27899999999999998876 2223557788889888888776421
Q ss_pred CCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCC-HHHHHHHHHHHHhC
Q 010844 220 PGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFD-DRLRHYATTQLSKS 297 (499)
Q Consensus 220 p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~-~~~~~~~~~~l~~~ 297 (499)
.++++|||+|+.|+|+|..+...+ .+|++++.. ++++.+. +.+.+.+.+.++++
T Consensus 136 ----------~~~v~vvG~G~~gle~A~~~~~~G--------------~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~ 191 (415)
T COG0446 136 ----------PKDVVVVGAGPIGLEAAEAAAKRG--------------KKVTLIEAADRLGGQLLDPEVAEELAELLEKY 191 (415)
T ss_pred ----------cCeEEEECCcHHHHHHHHHHHHcC--------------CeEEEEEcccccchhhhhHHHHHHHHHHHHHC
Confidence 359999999999999999999988 899999987 6777776 89999999999999
Q ss_pred CCEEEeC-ceEEEeCCe-------EEECCCcEEeeeEEEEcCCCCcchhcccCCC--CCCCCCceeeCCCCCCCCCCCeE
Q 010844 298 GVRLVRG-IVKDVDSQK-------LILNDGTEVPYGLLVWSTGVGPSTLVKSLDL--PKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~-------v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l--~~~~~G~i~vd~~l~~~~~~~If 367 (499)
||+++.+ .+.+++.+. +...++.++++|++++++|.+|+..+.+... ....+|+|.||+.+++..+++||
T Consensus 192 gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~ 271 (415)
T COG0446 192 GVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVY 271 (415)
T ss_pred CcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEE
Confidence 9999998 889998752 5777889999999999999999854444332 45667899999999983399999
Q ss_pred EeccccccccCC-CCCCCCchHHHHHHHHHHHHHHHHH
Q 010844 368 AVGDCSGYLEST-GKTVLPALAQVAERQGKYLFSLLNR 404 (499)
Q Consensus 368 a~GD~a~~~~~~-g~~~~p~~~~~A~~~g~~aa~~i~~ 404 (499)
|+|||+..+... +.....+.++.|..+++.++.++..
T Consensus 272 a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~ 309 (415)
T COG0446 272 AAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAG 309 (415)
T ss_pred eccceEeeecccCCceeeeechhhHhhhhHHHHHHhcc
Confidence 999999887644 2334577889999999999998764
No 72
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=1.1e-24 Score=242.25 Aligned_cols=289 Identities=17% Similarity=0.146 Sum_probs=188.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||||||+||..|++.|++|+|||+++....+..... ...........+......+....++.++. ++|
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~---~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V 239 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEA---ETIDGKPAADWAAATVAELTAMPEVTLLPRTTA 239 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccc---cccCCccHHHHHHHHHHHHhcCCCcEEEcCCEE
Confidence 57899999999999999999999999999999876543322111 11111111111122323344434566654 578
Q ss_pred EEEECCCCEEEEeeecCcc-----ccCCCceeeeeCCeEEEcCCCCccCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHH
Q 010844 141 AGIDTDNHVVHCETVTDEL-----RTLEPWKFKISYDKLVIALGAEASTFGIHGVK-ENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~-----~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
.+++.......++...... ....+....+.||+||||||+.++.+++||.+ +.++..... ..+...
T Consensus 240 ~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~---~~~l~~----- 311 (985)
T TIGR01372 240 FGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAA---RTYLNR----- 311 (985)
T ss_pred EEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHH---HHHHHh-----
Confidence 8886543322222111000 00001123689999999999999999999974 233332221 111110
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHH
Q 010844 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQL 294 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l 294 (499)
.. ....++|+|||+|++|+|+|..|...+. ..|++++..+. +...+.+.|
T Consensus 312 --~~--------~~~gk~VvViG~G~~g~e~A~~L~~~G~-------------~vV~vv~~~~~-------~~~~l~~~L 361 (985)
T TIGR01372 312 --YG--------VAPGKRIVVATNNDSAYRAAADLLAAGI-------------AVVAIIDARAD-------VSPEARAEA 361 (985)
T ss_pred --hC--------cCCCCeEEEECCCHHHHHHHHHHHHcCC-------------ceEEEEccCcc-------hhHHHHHHH
Confidence 00 0123699999999999999999998761 35788876531 233456778
Q ss_pred HhCCCEEEeC-ceEEEeCC----eEEEC----CCcEEeeeEEEEcCCCCcc-hhcccCCCCCC--CC--CceeeCCCCCC
Q 010844 295 SKSGVRLVRG-IVKDVDSQ----KLILN----DGTEVPYGLLVWSTGVGPS-TLVKSLDLPKS--PG--GRIGIDEWLRV 360 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~----~v~~~----~g~~i~~D~vi~a~G~~p~-~~~~~~~l~~~--~~--G~i~vd~~l~~ 360 (499)
++.||+++++ .+.++.++ +|++. ++++++||.|+++.|..|+ .++..++..+. +. +++. .|
T Consensus 362 ~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t 436 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GD 436 (985)
T ss_pred HHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CC
Confidence 9999999999 78888764 35554 4568999999999999999 46666664432 11 1211 13
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+.|+||++|||+. ...+..|+.+|+.||..|+..+.
T Consensus 437 -~v~gVyaaGD~~g----------~~~~~~A~~eG~~Aa~~i~~~lg 472 (985)
T TIGR01372 437 -AVQGCILAGAANG----------LFGLAAALADGAAAGAAAARAAG 472 (985)
T ss_pred -CCCCeEEeeccCC----------ccCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999995 44577899999999999887663
No 73
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=2.7e-25 Score=226.93 Aligned_cols=277 Identities=16% Similarity=0.157 Sum_probs=175.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh-----------------------hhh-------cc-
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA-----------------------STC-------VG- 109 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~-----------------------~~~-------~g- 109 (499)
..++|+|||||+|||+||++|++.|++|+|+|+++..+...... ... .+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 35789999999999999999999999999999987543322110 000 00
Q ss_pred --CCCCCc------------cccchhhhccccccCCCeE---EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCC
Q 010844 110 --TLEFRS------------VAEPIARIQPAISREPGSY---FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYD 172 (499)
Q Consensus 110 --~~~~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd 172 (499)
.+.... ....+.+++..+....++. ...++|+.|++.++.+.+.....+ +...+..||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----~~~~~~~~d 163 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----GFSKDEIFD 163 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----CceEEEEcC
Confidence 000000 0011222222233333332 345799999987776666543211 112356899
Q ss_pred eEEEcCC--CCccCCCCCCcccc---CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHH
Q 010844 173 KLVIALG--AEASTFGIHGVKEN---ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSG 247 (499)
Q Consensus 173 ~LViAtG--~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~ 247 (499)
+||+||| +.|+.|.+||+++. .++.+++.+.. ..+.|+|+|||+|.+|+|+|.
T Consensus 164 ~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~----------------------~~~gk~VvVVG~G~Sg~diA~ 221 (461)
T PLN02172 164 AVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD----------------------PFKNEVVVVIGNFASGADISR 221 (461)
T ss_pred EEEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc----------------------ccCCCEEEEECCCcCHHHHHH
Confidence 9999999 67899999998532 12222221111 134579999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe-CCeEEECCCcEEeee
Q 010844 248 ELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD-SQKLILNDGTEVPYG 325 (499)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~-~~~v~~~~g~~i~~D 325 (499)
+|...+ .+|+++++....... +.+.....++..+ .|..+. ++.|+++||+++++|
T Consensus 222 ~L~~~a--------------~~V~l~~r~~~~~~~---------~~~~~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D 278 (461)
T PLN02172 222 DIAKVA--------------KEVHIASRASESDTY---------EKLPVPQNNLWMHSEIDTAHEDGSIVFKNGKVVYAD 278 (461)
T ss_pred HHHHhC--------------CeEEEEEeecccccc---------ccCcCCCCceEECCcccceecCCeEEECCCCCccCC
Confidence 999877 899999986311100 1111123344444 566554 356999999999999
Q ss_pred EEEEcCCCCcc-hhcccCCCCCCCCCceeeCCC--------CCCCC-CCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010844 326 LLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEW--------LRVPS-VQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 326 ~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~--------l~~~~-~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
.||+|||++++ +++... |.+.+|+. .-.+. .|+++.+|=+.. ......+..||
T Consensus 279 ~Ii~~TGy~~~~pfL~~~-------~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~----------~~~f~~~E~Qa 341 (461)
T PLN02172 279 TIVHCTGYKYHFPFLETN-------GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM----------GIQFVMFEIQS 341 (461)
T ss_pred EEEECCcCCccccccCcc-------cceeeCCCcchhhHHhhcCCCCCCcEEEEecccc----------ccCchhHHHHH
Confidence 99999999998 665543 33444433 11233 389999996542 23356788899
Q ss_pred HHHHHHHHH
Q 010844 396 KYLFSLLNR 404 (499)
Q Consensus 396 ~~aa~~i~~ 404 (499)
+++|+.+..
T Consensus 342 ~~~a~v~sG 350 (461)
T PLN02172 342 KWVAAVLSG 350 (461)
T ss_pred HHHHHHHcC
Confidence 999887643
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.93 E-value=5.5e-25 Score=223.75 Aligned_cols=306 Identities=16% Similarity=0.127 Sum_probs=178.0
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++|+|||||||||+||..|++ .|++|+|||+.+..... +.+.+.........+...+..+ ....++.|+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGl-vr~gvaP~~~~~k~v~~~~~~~----~~~~~v~~~~n 99 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGL-VRSGVAPDHPETKNVTNQFSRV----ATDDRVSFFGN 99 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcce-EeeccCCCcchhHHHHHHHHHH----HHHCCeEEEcC
Confidence 35789999999999999999986 79999999999864321 1122211111122222222222 22256776553
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCc-cCCCCCCcc-ccCccCCCHHHHHHHHHHHHHHHhh
Q 010844 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEA-STFGIHGVK-ENATFLREVHHAQEIRRKLLLNLML 216 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~-~~~~ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (499)
...+ +.++++. ....||+||||||+.+ +.++|||.+ ++++. +..+...+...-..
T Consensus 100 v~vg-----~dvtl~~------------L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~------a~~fl~~~ng~~d~ 156 (491)
T PLN02852 100 VTLG-----RDVSLSE------------LRDLYHVVVLAYGAESDRRLGIPGEDLPGVLS------AREFVWWYNGHPDC 156 (491)
T ss_pred EEEC-----ccccHHH------------HhhhCCEEEEecCCCCCCCCCCCCCCCCCeEE------HHHHHHHhhcchhh
Confidence 2221 2333332 1347999999999985 678899964 23332 22222111100000
Q ss_pred cCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHH-----hcCCCC--CceEEEEEeCCCc--CCCCCHHHH
Q 010844 217 SDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQ-----RYSHVK--DYIHVTLIEANEI--LSSFDDRLR 287 (499)
Q Consensus 217 ~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~-----~~~~~~--~~~~Vtlv~~~~~--l~~~~~~~~ 287 (499)
.... ......++|+|||+|++|+|+|..|.+....-... .+..++ .-.+|+++.|... .+....++.
T Consensus 157 ~~~~----~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elr 232 (491)
T PLN02852 157 VHLP----PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELR 232 (491)
T ss_pred hhhh----hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHH
Confidence 0000 00123469999999999999999987642100000 000011 1257999987631 111111111
Q ss_pred H-------------------------------------HHHHHHHh---------CCCEEEeC-ceEEEeC-----C---
Q 010844 288 H-------------------------------------YATTQLSK---------SGVRLVRG-IVKDVDS-----Q--- 312 (499)
Q Consensus 288 ~-------------------------------------~~~~~l~~---------~gV~v~~~-~v~~v~~-----~--- 312 (499)
+ .+.+...+ ++|.++.. ...+|.. +
T Consensus 233 el~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~ 312 (491)
T PLN02852 233 ELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVA 312 (491)
T ss_pred HHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEE
Confidence 1 11112112 46777765 4555531 1
Q ss_pred eEEEC-----------------CC--cEEeeeEEEEcCCCCc--ch---hcccCCCCCCCCCceeeCCCCCCCCCCCeEE
Q 010844 313 KLILN-----------------DG--TEVPYGLLVWSTGVGP--ST---LVKSLDLPKSPGGRIGIDEWLRVPSVQDVFA 368 (499)
Q Consensus 313 ~v~~~-----------------~g--~~i~~D~vi~a~G~~p--~~---~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa 368 (499)
++++. +| ++++||.||.++|+++ .+ +....++..+.+|+|.+|+.++| +.|+|||
T Consensus 313 ~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyA 391 (491)
T PLN02852 313 GVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYV 391 (491)
T ss_pred EEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEE
Confidence 23221 22 2589999999999984 32 22233455677899999988887 8999999
Q ss_pred eccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 369 VGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 369 ~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+|||.. |. ......++.+|+.+|.+|...+.
T Consensus 392 aGDi~~-----Gp---~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 392 VGWLKR-----GP---TGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred eeeEec-----CC---CCeeeecHhhHHHHHHHHHHHHH
Confidence 999996 32 33567789999999999998876
No 75
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.93 E-value=8.2e-25 Score=206.46 Aligned_cols=304 Identities=18% Similarity=0.261 Sum_probs=222.2
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccc--cchhhhh-ccCC--------------------CCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFT--PLLASTC-VGTL--------------------EFRS 115 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~--~~~~~~~-~g~~--------------------~~~~ 115 (499)
++...+|||||.+..+++...+. .+.+|.+|..++..+|. |+..+.+ .+.. .++.
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 34568999999999988877765 46789999988887775 3332221 1110 1111
Q ss_pred cccchhhhccccccCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCC-CC----
Q 010844 116 VAEPIARIQPAISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGI-HG---- 189 (499)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~i-pG---- 189 (499)
....-.++- .....++.++++ .|+.||.+.+.|.+.+ | .+|.||.++||||.+|....+ .-
T Consensus 257 FfvspeDLp--~~~nGGvAvl~G~kvvkid~~d~~V~LnD---G--------~~I~YdkcLIATG~~Pk~l~~~~~A~~e 323 (659)
T KOG1346|consen 257 FFVSPEDLP--KAVNGGVAVLRGRKVVKIDEEDKKVILND---G--------TTIGYDKCLIATGVRPKKLQVFEEASEE 323 (659)
T ss_pred ceeChhHCc--ccccCceEEEeccceEEeecccCeEEecC---C--------cEeehhheeeecCcCcccchhhhhcCHH
Confidence 111112221 112246666776 8999999999999887 3 589999999999999976432 21
Q ss_pred ccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE
Q 010844 190 VKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH 269 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~ 269 (499)
..+.+..++...|..++.+-+.+ .++|.|||+|..|.|+|+.|.+.... .+.+
T Consensus 324 vk~kit~fr~p~DF~rlek~~ae-----------------k~siTIiGnGflgSELacsl~rk~r~----------~g~e 376 (659)
T KOG1346|consen 324 VKQKITYFRYPADFKRLEKGLAE-----------------KQSITIIGNGFLGSELACSLKRKYRN----------EGVE 376 (659)
T ss_pred hhhheeEEecchHHHHHHHhhhh-----------------cceEEEEcCcchhhhHHHHHHHhhhc----------cCcE
Confidence 12455567777788777665421 25899999999999999999876421 2367
Q ss_pred EEEEeCC--CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc-hhccc
Q 010844 270 VTLIEAN--EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS-TLVKS 341 (499)
Q Consensus 270 Vtlv~~~--~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~-~~~~~ 341 (499)
|+-+-.. +.-.-+++.++++..+.+++.||.++.+ .|.++... .+.++||.++..|+||+|+|-.|| ++++.
T Consensus 377 V~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~ 456 (659)
T KOG1346|consen 377 VHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA 456 (659)
T ss_pred EEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc
Confidence 7765443 3323456789999999999999999999 77776543 467899999999999999999999 68888
Q ss_pred CCCCCCCC-CceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010844 342 LDLPKSPG-GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 342 ~~l~~~~~-G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.+|++|++ |.+.||..|+. ..|||++||++.+.+..=+........+|.-.|+.++.|+....
T Consensus 457 sgLeiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAa 520 (659)
T KOG1346|consen 457 SGLEIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAA 520 (659)
T ss_pred ccceeecccCcEEeeheeec--ccceeeecchhhhhcccccceeccccccceeeceeccccccccc
Confidence 89999876 78999999997 68999999999987753333445667788889999999986544
No 76
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.92 E-value=1.4e-24 Score=198.60 Aligned_cols=329 Identities=19% Similarity=0.247 Sum_probs=227.9
Q ss_pred CCCCCCcEEEECCchHHHHHHHhccCC-C-CeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEE
Q 010844 58 KANEKPRVVVLGSGWAGCRLMKGIDTS-L-YDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYF 135 (499)
Q Consensus 58 ~~~~~~~VvIIGgG~aGl~aA~~L~~~-g-~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (499)
...++.+|+|||||.+|+.+|..+.+. + -+|.|||+...+.|+|.+.-+..|....+.......++.+ .+..+
T Consensus 35 ~~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP-----~~a~w 109 (446)
T KOG3851|consen 35 FARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIP-----KGATW 109 (446)
T ss_pred hcccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCccccccc-----CCcHH
Confidence 335678999999999999998888653 3 3699999999999999988887787776666666666543 45677
Q ss_pred EEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccc-----cCccCCCHHHHHHHHHHH
Q 010844 136 FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKE-----NATFLREVHHAQEIRRKL 210 (499)
Q Consensus 136 ~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~-----~~~~~~~~~~~~~~~~~~ 210 (499)
++.+|...+++++.|.++. +.+|.|||||||+|...++-.|+|+.| .+....+..........+
T Consensus 110 i~ekv~~f~P~~N~v~t~g-----------g~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~ 178 (446)
T KOG3851|consen 110 IKEKVKEFNPDKNTVVTRG-----------GEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKEL 178 (446)
T ss_pred HHHHHHhcCCCcCeEEccC-----------CcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHH
Confidence 8899999999999998876 258999999999999988888988743 344444555555444443
Q ss_pred HHHHh----hcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHH
Q 010844 211 LLNLM----LSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDR 285 (499)
Q Consensus 211 ~~~~~----~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~ 285 (499)
.+ +. ....|. .-+-..|+-.-.+-++... .+ ....|+..++.....- .++. -..
T Consensus 179 ~~-fk~GNAIfTfPn---------tpiKCAGAPQKi~yise~y--------~R-k~gvRd~a~iiy~Tsl~~iFg--Vk~ 237 (446)
T KOG3851|consen 179 MN-FKKGNAIFTFPN---------TPIKCAGAPQKIMYISESY--------FR-KRGVRDNANIIYNTSLPTIFG--VKH 237 (446)
T ss_pred Hh-ccCCceEEecCC---------CccccCCCchhhhhhhHHH--------HH-HhCccccccEEEecCccceec--HHH
Confidence 21 21 112222 0111122221111111111 11 1234455666555543 3322 146
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCC--eEEECC----C--cEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCC
Q 010844 286 LRHYATTQLSKSGVRLVRG-IVKDVDSQ--KLILND----G--TEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDE 356 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~v~~~~----g--~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~ 356 (499)
..+.+++..++++|++-.. .+.+|..+ ..++++ | ++++++++-+....++++.++++.+ .|+.|++.||+
T Consensus 238 Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~~-adktGfvdVD~ 316 (446)
T KOG3851|consen 238 YADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSDL-ADKTGFVDVDQ 316 (446)
T ss_pred HHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCcc-cCcccceecCh
Confidence 6778888889999999877 66666543 233322 3 4799999999999999988888886 57889999995
Q ss_pred -CCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCcCCCCCCceecccceE-E
Q 010844 357 -WLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKAGGGRANSAKDMELGDPFVYRHLGSM-A 434 (499)
Q Consensus 357 -~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 434 (499)
++|+..+||||++|||+.. |..+++..+..|..++-+|+....+ |.. +-..|....+| +
T Consensus 317 ~TlQs~kypNVFgiGDc~n~-------PnsKTaAAvaaq~~vv~~nl~~~m~---g~~---------pt~~ydGYtSCPl 377 (446)
T KOG3851|consen 317 STLQSKKYPNVFGIGDCMNL-------PNSKTAAAVAAQSPVVDKNLTQVMQ---GKR---------PTMKYDGYTSCPL 377 (446)
T ss_pred hhhccccCCCceeeccccCC-------CchhhHHHHHhcCchhhhhHHHHhc---CCC---------cceeecCcccCce
Confidence 5999999999999999974 4588888888999999999998876 321 34456666666 4
Q ss_pred EecCCceeE
Q 010844 435 TIGRYKALV 443 (499)
Q Consensus 435 ~lG~~~av~ 443 (499)
..|-+.-++
T Consensus 378 vtgy~k~iL 386 (446)
T KOG3851|consen 378 VTGYNKVIL 386 (446)
T ss_pred eeccceEEE
Confidence 555555443
No 77
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.92 E-value=8e-24 Score=224.94 Aligned_cols=342 Identities=12% Similarity=0.123 Sum_probs=191.8
Q ss_pred cccccc-cccccccccCCCCCCCCCccceecccCCCccCCCC-----------CC--ccccccCCCCCCCCCCCCcEEEE
Q 010844 3 LFKHLL-RNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASP-----------ST--VQLTQYSGLGPTKANEKPRVVVL 68 (499)
Q Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~VvII 68 (499)
++--++ |||. .|+.+|.+. .+.| ..|+.+++|..+... .. +...... +.......++|+||
T Consensus 315 ~p~~~G~RVCp-~CE~aC~r~-~deP-V~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~--~~~~~~tgKKVaVV 389 (1028)
T PRK06567 315 MVAATGHRICN-DCSKACIYQ-KQDP-VNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYA--PLPKEPTNYNILVT 389 (1028)
T ss_pred ChHhhCCccCc-chHHHhcCC-CCCC-eehhHHHHHHhhhhhhhcccccccccccccccccccC--CCCCCCCCCeEEEE
Confidence 344577 9999 699999998 5544 888888887654210 00 0000111 11222456899999
Q ss_pred CCchHHHHHHHhccCCCCeEEEEcCCCC--------------cccccchhhhh---ccCCCCCcccc--c---hhhhccc
Q 010844 69 GSGWAGCRLMKGIDTSLYDVVCVSPRNH--------------MVFTPLLASTC---VGTLEFRSVAE--P---IARIQPA 126 (499)
Q Consensus 69 GgG~aGl~aA~~L~~~g~~V~lie~~~~--------------~~~~~~~~~~~---~g~~~~~~~~~--~---~~~~~~~ 126 (499)
|||||||+||++|++.|++|||+|+.+. ..|.+++.+.. .|.+....+.. + +..+...
T Consensus 390 GaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~~l~~i~~i 469 (1028)
T PRK06567 390 GLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKNNLDILRLI 469 (1028)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHHHHHHHHHH
Confidence 9999999999999999999999998531 23455554444 23222222221 0 1111111
Q ss_pred cccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC-CccCCCCCCccccCccCCCHHHHHH
Q 010844 127 ISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA-EASTFGIHGVKENATFLREVHHAQE 205 (499)
Q Consensus 127 ~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~-~~~~~~ipG~~~~~~~~~~~~~~~~ 205 (499)
+....++.++.+...+.| ++.+. -....||+|+||||+ .|+.++|||.+. ..+.+..+...
T Consensus 470 l~~g~~v~~~~gv~lG~d-----it~ed-----------l~~~gyDAV~IATGA~kpr~L~IPGeda--~GV~sA~DfL~ 531 (1028)
T PRK06567 470 LERNNNFKYYDGVALDFN-----ITKEQ-----------AFDLGFDHIAFCIGAGQPKVLDIENFEA--KGVKTASDFLM 531 (1028)
T ss_pred HhcCCceEEECCeEECcc-----CCHHH-----------HhhcCCCEEEEeCCCCCCCCCCCCCccC--CCeEEHHHHHH
Confidence 222334555544443322 22221 024579999999999 699999999752 22333333322
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHH--------HHHHHHHhcCCC-------------
Q 010844 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDF--------IMRDVRQRYSHV------------- 264 (499)
Q Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~--------~~~~~~~~~~~~------------- 264 (499)
..+.. ..+.....+ .....++|+|||||++|+|+|.+...+ ......+.||..
T Consensus 532 ~l~~~-~~~~~~~~~-----~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r 605 (1028)
T PRK06567 532 TLQSG-GAFLKNSNT-----NMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAK 605 (1028)
T ss_pred HHhhc-ccccccccC-----cccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHH
Confidence 21110 001000000 011236899999999999999955431 000011111110
Q ss_pred ---------------CCceEEEEEeCC--CcCCCC---CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC------eEEEC
Q 010844 265 ---------------KDYIHVTLIEAN--EILSSF---DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ------KLILN 317 (499)
Q Consensus 265 ---------------~~~~~Vtlv~~~--~~l~~~---~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~------~v~~~ 317 (499)
+....|+++.|. .-+|.. .+++. ...+.||+++.+ ...++..+ ++++.
T Consensus 606 ~~g~~~~~~~v~~l~~~~G~VtIvYRr~~~empA~~~~~eEv~-----~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~ 680 (1028)
T PRK06567 606 LFKEAKNNEELRKVFNKLGGATVYYRGRLQDSPAYKLNHEELI-----YALALGVDFKENMQPLRINVDKYGHVESVEFE 680 (1028)
T ss_pred hhcchhccchhhhhhccCCceEEEecCChhhCCCCCCCHHHHH-----HHHHcCcEEEecCCcEEEEecCCCeEEEEEEE
Confidence 001128888886 345653 22332 234569999977 55555321 11111
Q ss_pred ------------------------------CCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCCCCCCeE
Q 010844 318 ------------------------------DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVPSVQDVF 367 (499)
Q Consensus 318 ------------------------------~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~~~~~If 367 (499)
...+|+||.||+|+|..|+.... ..++-
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~----------------------~~~~s 738 (1028)
T PRK06567 681 NRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD----------------------EDKYS 738 (1028)
T ss_pred EEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc----------------------ccccc
Confidence 11468999999999999994321 01123
Q ss_pred EeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 010844 368 AVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGKA 408 (499)
Q Consensus 368 a~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~~ 408 (499)
..||+-. .+..+...|+.+|+.++.+|.+++..
T Consensus 739 ~~~d~~~--------~f~Gtvv~A~as~k~~~~~i~~~l~~ 771 (1028)
T PRK06567 739 YFGDCNP--------KYSGSVVKALASSKEGYDAINKKLIN 771 (1028)
T ss_pred cccCCCC--------ccccHHHHHHHHHHhHHHHHHHHHhh
Confidence 4455542 22346788999999999999888763
No 78
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.2e-23 Score=183.20 Aligned_cols=290 Identities=17% Similarity=0.149 Sum_probs=190.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC---c-ccc---cchhhhhccCCCCCccccchhhhccccccCCCeE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH---M-VFT---PLLASTCVGTLEFRSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~---~-~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (499)
+.+|+|||+|||+.+||.++++...+-+|+|---. . ..+ .--.+...|.++.- .-..+.+.++....+.+.+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi-~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGI-TGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCccc-ccHHHHHHHHHHHHhhcce
Confidence 35899999999999999999999899999984311 0 000 00000011111110 0112333333344556788
Q ss_pred EEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHH
Q 010844 135 FFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNL 214 (499)
Q Consensus 135 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (499)
++..+|..+|...+.+.+... .+.+.+|.+|+|||+..+...+||..+..+.-+.+.... .
T Consensus 87 i~tEtVskv~~sskpF~l~td----------~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCA-V-------- 147 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTD----------ARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACA-V-------- 147 (322)
T ss_pred eeeeehhhccccCCCeEEEec----------CCceeeeeEEEecccceeeeecCCCCcchHHhcccchhh-c--------
Confidence 899999999999988777651 258999999999999988888888633222222221111 0
Q ss_pred hhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHH-H
Q 010844 215 MLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATT-Q 293 (499)
Q Consensus 215 ~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~-~ 293 (499)
.... ....+.|-.+|||||.+++|-|..|..++ .+|++++|.+.+ +.+..+++ .
T Consensus 148 CDGa------apifrnk~laVIGGGDsA~EEA~fLtkya--------------skVyii~Rrd~f-----RAs~~Mq~ra 202 (322)
T KOG0404|consen 148 CDGA------APIFRNKPLAVIGGGDSAMEEALFLTKYA--------------SKVYIIHRRDHF-----RASKIMQQRA 202 (322)
T ss_pred ccCc------chhhcCCeeEEEcCcHHHHHHHHHHHhhc--------------cEEEEEEEhhhh-----hHHHHHHHHH
Confidence 0001 11244567899999999999999999988 899999987433 23334444 3
Q ss_pred HHhCCCEEEeC-ceEEEeCC-----eEEEC-----CCcEEeeeEEEEcCCCCcch-hcccCCCCCCCCCceeeCCC-CCC
Q 010844 294 LSKSGVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPST-LVKSLDLPKSPGGRIGIDEW-LRV 360 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~-----~v~~~-----~g~~i~~D~vi~a~G~~p~~-~~~~~~l~~~~~G~i~vd~~-l~~ 360 (499)
++..+|+++.+ .+.+..++ ++.++ +.+.++++-+++++|..|++ +++. .+++|.+|+|.+.+. -.|
T Consensus 203 ~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~T 281 (322)
T KOG0404|consen 203 EKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLT 281 (322)
T ss_pred hcCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccc
Confidence 45568999988 44444433 33332 23579999999999999995 5554 889999999999854 555
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010844 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+.|++||+||+..- --.++..|...|-++|-...+++
T Consensus 282 -svpG~FAAGDVqD~--------kyRQAvTaAgsGciaaldAe~yL 318 (322)
T KOG0404|consen 282 -SVPGVFAAGDVQDK--------KYRQAVTAAGSGCIAALDAERYL 318 (322)
T ss_pred -cccceeeccccchH--------HHHHHHhhhccchhhhhhHHHHh
Confidence 99999999999941 12344555555666554444443
No 79
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-23 Score=194.83 Aligned_cols=274 Identities=19% Similarity=0.200 Sum_probs=182.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh---hhhccCCCC--CccccchhhhccccccCCCeE
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA---STCVGTLEF--RSVAEPIARIQPAISREPGSY 134 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~---~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~ 134 (499)
...++|+||||||||-+||.+.+++|.+.=|+-. +|..+.+-. +...+.+.. ..+...+... . +...+.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~H---v-~~Y~vD 282 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAH---V-KQYDVD 282 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHH---H-hhcCch
Confidence 4568999999999999999999999988655532 233332211 111111110 0111112221 1 113344
Q ss_pred EEE-EEEEEEECC-----CCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccC---ccCCCHHHHHH
Q 010844 135 FFL-SHCAGIDTD-----NHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENA---TFLREVHHAQE 205 (499)
Q Consensus 135 ~~~-~~v~~id~~-----~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~---~~~~~~~~~~~ 205 (499)
.+. .+++.+.+. ...|++++ | ..+....+|+|||++.+..++||.+++. ..++...|
T Consensus 283 imn~qra~~l~~a~~~~~l~ev~l~n---G--------avLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCD--- 348 (520)
T COG3634 283 VMNLQRASKLEPAAVEGGLIEVELAN---G--------AVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCD--- 348 (520)
T ss_pred hhhhhhhhcceecCCCCccEEEEecC---C--------ceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCC---
Confidence 333 245555542 22455554 2 4789999999999999999999976421 11111111
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHH
Q 010844 206 IRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDR 285 (499)
Q Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~ 285 (499)
-| -.++|+|+|||||++|+|.|..|+... .+||+++-.+-| +
T Consensus 349 -------------GP------LF~gK~VAVIGGGNSGvEAAIDLAGiv--------------~hVtllEF~~eL-----k 390 (520)
T COG3634 349 -------------GP------LFKGKRVAVIGGGNSGVEAAIDLAGIV--------------EHVTLLEFAPEL-----K 390 (520)
T ss_pred -------------Cc------ccCCceEEEECCCcchHHHHHhHHhhh--------------heeeeeecchhh-----h
Confidence 11 145579999999999999999999887 789999864322 2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC-----eEEECC---C--cEEeeeEEEEcCCCCcc-hhcccCCCCCCCCCce
Q 010844 286 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ-----KLILND---G--TEVPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRI 352 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~~-----~v~~~~---g--~~i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i 352 (499)
..+.+++.|+.. +|+++++ .-++|.++ ++...| | ..++-+-|++-+|..|| .|++.. ++++++|-|
T Consensus 391 AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEI 469 (520)
T COG3634 391 ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEI 469 (520)
T ss_pred hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccE
Confidence 344566777665 8999999 78888775 333332 3 25778889999999999 588776 888999999
Q ss_pred eeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 010844 353 GIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSL 401 (499)
Q Consensus 353 ~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~ 401 (499)
.||....| +.|+|||+|||+..+ -++...|+.+|..++-+
T Consensus 470 ivD~~g~T-svpGvFAAGD~T~~~--------yKQIIIamG~GA~AaL~ 509 (520)
T COG3634 470 IVDARGET-NVPGVFAAGDCTTVP--------YKQIIIAMGEGAKASLS 509 (520)
T ss_pred EEecCCCc-CCCceeecCcccCCc--------cceEEEEecCcchhhhh
Confidence 99999999 999999999999743 34455566666665543
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.90 E-value=1e-23 Score=217.96 Aligned_cols=288 Identities=16% Similarity=0.230 Sum_probs=151.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhh------------hhcc----CCC------C------
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLAS------------TCVG----TLE------F------ 113 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~------------~~~g----~~~------~------ 113 (499)
+++|+|||||++||++|+.|.+.|++++++|+++..+..+...+ .... .+. +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37899999999999999999999999999999987654432111 0000 000 1
Q ss_pred ---CccccchhhhccccccCCCeEEEEEEEEEEECCC-----CEEEEeeecCccccCCCceeeeeCCeEEEcCCC--Ccc
Q 010844 114 ---RSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN-----HVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EAS 183 (499)
Q Consensus 114 ---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~-----~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~--~~~ 183 (499)
.++...++.+...+.....++ ..++|+++.... ..+.+....++ +..+..||+||+|||. .|+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g------~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDG------KEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTT------EEEEEEECEEEEEE-SSSCES
T ss_pred CCHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCC------eEEEEEeCeEEEcCCCcCCCC
Confidence 112223343333232222232 357788876532 34555442222 2346679999999995 477
Q ss_pred CCC--CCCccc---cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHH
Q 010844 184 TFG--IHGVKE---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVR 258 (499)
Q Consensus 184 ~~~--ipG~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~ 258 (499)
.|. +||++. ..++.+++.+. +..+.|+|+|||+|.||+|+|.+|+...
T Consensus 154 ~P~~~~~G~e~F~G~i~HS~~yr~~----------------------~~f~gKrVlVVG~g~Sg~DIa~el~~~a----- 206 (531)
T PF00743_consen 154 IPEPSFPGLEKFKGEIIHSKDYRDP----------------------EPFKGKRVLVVGGGNSGADIAVELSRVA----- 206 (531)
T ss_dssp B-----CTGGGHCSEEEEGGG--TG----------------------GGGTTSEEEEESSSHHHHHHHHHHTTTS-----
T ss_pred CChhhhhhhhcCCeeEEccccCcCh----------------------hhcCCCEEEEEeCCHhHHHHHHHHHHhc-----
Confidence 774 899863 23333333221 2245679999999999999999998754
Q ss_pred HhcCCCCCceEEEEEeCC--CcCCCC-----------------------CHHHH--------------------------
Q 010844 259 QRYSHVKDYIHVTLIEAN--EILSSF-----------------------DDRLR-------------------------- 287 (499)
Q Consensus 259 ~~~~~~~~~~~Vtlv~~~--~~l~~~-----------------------~~~~~-------------------------- 287 (499)
.+|++..|. -++|.+ +..+.
T Consensus 207 ---------~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~ 277 (531)
T PF00743_consen 207 ---------KKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFF 277 (531)
T ss_dssp ---------CCEEEECC---------------------------------------------------------------
T ss_pred ---------CCeEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455555443 133211 00011
Q ss_pred -------HHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEE-eeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCC
Q 010844 288 -------HYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEV-PYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWL 358 (499)
Q Consensus 288 -------~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i-~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l 358 (499)
+.+...+....|.+. ..|.++++++|+++||+++ ++|.||+|||+... +++.+.-+..+ ++.+..-.++
T Consensus 278 ~~~~~ind~l~~~i~~G~i~vk-~~I~~~~~~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~-~~~~~LYk~v 355 (531)
T PF00743_consen 278 SQHPTINDELPNRIRSGRIKVK-PDIKRFTENSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVD-DNRVRLYKHV 355 (531)
T ss_dssp ---------------------E-E-EEEE-SSEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S--SSSSSEETTT
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 111111222223332 2477788889999999875 69999999999988 77765433332 3334333433
Q ss_pred CCC--CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Q 010844 359 RVP--SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLN 403 (499)
Q Consensus 359 ~~~--~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~ 403 (499)
-.+ .+|++..+|=+... ......+..||+++|+.+.
T Consensus 356 fp~~~~~ptLafIG~~~~~---------g~~fp~~ElQArw~a~v~s 393 (531)
T PF00743_consen 356 FPPNLDHPTLAFIGLVQPF---------GSIFPIFELQARWAARVFS 393 (531)
T ss_dssp EETETTSTTEEESS-SBSS---------S-HHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccc---------ccccccccccccccccccc
Confidence 222 35889999976521 2345678888888887653
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=204.65 Aligned_cols=346 Identities=20% Similarity=0.185 Sum_probs=213.0
Q ss_pred cccccccccccc--cccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHh
Q 010844 3 LFKHLLRNPTAK--SYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKG 80 (499)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~ 80 (499)
+.--++|+|.++ |+..|.......| ..+..+.++..+..-.... .+..++. +...++|.|||||||||++|..
T Consensus 67 ~p~~~gRvcp~~~~ceg~cv~~~~~~~-v~i~~le~~i~d~~~~~g~---i~~~~~~-~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 67 LPAITGRVCPLGNLCEGACVLGIEELP-VNIGALERAIGDKADREGW---IPGELPG-SRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred CccccCccCCCCCceeeeeeeccCCCc-hhhhhHHHHHhhHHHHhCC---CCCCCCC-CCCCCEEEEECCCchHhhhHHH
Confidence 344578999999 9999988864433 4555555555444321111 1122211 1233899999999999999999
Q ss_pred ccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccc
Q 010844 81 IDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELR 160 (499)
Q Consensus 81 L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 160 (499)
|++.|++||++|+.+..... ...|.+....-..-+......+.. .+++|+.....+.+ ++++.
T Consensus 142 L~~~G~~Vtv~e~~~~~GGl-----l~yGIP~~kl~k~i~d~~i~~l~~-~Gv~~~~~~~vG~~-----it~~~------ 204 (457)
T COG0493 142 LSRAGHDVTVFERVALDGGL-----LLYGIPDFKLPKDILDRRLELLER-SGVEFKLNVRVGRD-----ITLEE------ 204 (457)
T ss_pred HHhCCCeEEEeCCcCCCcee-----EEecCchhhccchHHHHHHHHHHH-cCeEEEEcceECCc-----CCHHH------
Confidence 99999999999998764432 111222221111112222222333 45777765444332 22222
Q ss_pred cCCCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcC
Q 010844 161 TLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGG 239 (499)
Q Consensus 161 ~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG 239 (499)
-.-.||++++|||+. |+..++||.+ ...+..+..+...+...... ..+. ........++|+|||||
T Consensus 205 ------L~~e~Dav~l~~G~~~~~~l~i~g~d-----~~gv~~A~dfL~~~~~~~~~-~~~~-~~~~~~~gk~vvVIGgG 271 (457)
T COG0493 205 ------LLKEYDAVFLATGAGKPRPLDIPGED-----AKGVAFALDFLTRLNKEVLG-DFAE-DRTPPAKGKRVVVIGGG 271 (457)
T ss_pred ------HHHhhCEEEEeccccCCCCCCCCCcC-----CCcchHHHHHHHHHHHHHhc-cccc-ccCCCCCCCeEEEECCC
Confidence 134679999999976 7778999964 23333444443333211111 1110 00111233799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--C-cCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC----
Q 010844 240 PTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--E-ILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS---- 311 (499)
Q Consensus 240 ~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~-~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---- 311 (499)
.++++++......+. .+|+.+.+. + -....+....+...+...+.|+..... .-.++..
T Consensus 272 ~Ta~D~~~t~~r~Ga-------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~G 338 (457)
T COG0493 272 DTAMDCAGTALRLGA-------------KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGG 338 (457)
T ss_pred CCHHHHHHHHhhcCC-------------eEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCC
Confidence 999999988877763 578877532 2 222223333444555566677665543 2222221
Q ss_pred -------CeEEEC--------------CC--cEEeeeEEEEcCCCCcch--hc-ccCCCCCCCCCceeeCCCC-CCCCCC
Q 010844 312 -------QKLILN--------------DG--TEVPYGLLVWSTGVGPST--LV-KSLDLPKSPGGRIGIDEWL-RVPSVQ 364 (499)
Q Consensus 312 -------~~v~~~--------------~g--~~i~~D~vi~a~G~~p~~--~~-~~~~l~~~~~G~i~vd~~l-~~~~~~ 364 (499)
..+... .| .++++|+|+.++|+.++. .. ...++..+..|++.+|+.+ +| +.|
T Consensus 339 rV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~ 417 (457)
T COG0493 339 RVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIP 417 (457)
T ss_pred cEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCC
Confidence 111111 12 357899999999999983 22 2236778889999999998 77 999
Q ss_pred CeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010844 365 DVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 365 ~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
++||.||+.. | ..+...|+.+|+.+|+.|...+
T Consensus 418 ~vfa~gD~~~-----g----~~~vv~ai~eGr~aak~i~~~~ 450 (457)
T COG0493 418 GVFAGGDAVR-----G----AALVVWAIAEGREAAKAIDKEL 450 (457)
T ss_pred CeeeCceecc-----c----hhhhhhHHhhchHHHHhhhHHH
Confidence 9999999996 3 6778899999999999998443
No 82
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.84 E-value=4.1e-21 Score=199.22 Aligned_cols=345 Identities=19% Similarity=0.226 Sum_probs=198.5
Q ss_pred ccccccccccccccCCCCCCCCCccceecccCCCccCCCCCCccccccCCCCCCCCCCCCcEEEECCchHHHHHHHhccC
Q 010844 4 FKHLLRNPTAKSYSYSSPSIIMPSNLILTCLSHFTTDASPSTVQLTQYSGLGPTKANEKPRVVVLGSGWAGCRLMKGIDT 83 (499)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgG~aGl~aA~~L~~ 83 (499)
+--.+|+|..||+-.|.-+++..|.. +.+.....-+.+- ..-+.++-++. ....++|.|||+|||||+||-+|.+
T Consensus 1732 peftgrvcpapcegactlgiie~pv~-iksie~aiid~af---~egwm~p~pp~-~rtg~~vaiigsgpaglaaadqlnk 1806 (2142)
T KOG0399|consen 1732 PEFTGRVCPAPCEGACTLGIIEPPVG-IKSIECAIIDKAF---EEGWMKPCPPA-FRTGKRVAIIGSGPAGLAAADQLNK 1806 (2142)
T ss_pred ccccCccCCCCcCcceeeecccCCcc-ccchhhHHHHHHH---HhcCCccCCcc-cccCcEEEEEccCchhhhHHHHHhh
Confidence 44568999999999999998887743 3323222212110 00112222222 2345899999999999999999999
Q ss_pred CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCC
Q 010844 84 SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLE 163 (499)
Q Consensus 84 ~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~ 163 (499)
.|+.|||+|+.++...- +.+++. .+..+... +.+-.. +....+++|+...-.+ +.+.++.
T Consensus 1807 ~gh~v~vyer~dr~ggl-l~ygip--nmkldk~v--v~rrv~-ll~~egi~f~tn~eig-----k~vs~d~--------- 1866 (2142)
T KOG0399|consen 1807 AGHTVTVYERSDRVGGL-LMYGIP--NMKLDKFV--VQRRVD-LLEQEGIRFVTNTEIG-----KHVSLDE--------- 1866 (2142)
T ss_pred cCcEEEEEEecCCcCce-eeecCC--ccchhHHH--HHHHHH-HHHhhCceEEeecccc-----ccccHHH---------
Confidence 99999999999875432 111111 11222211 111111 2233688886543222 2244333
Q ss_pred CceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHH
Q 010844 164 PWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTG 242 (499)
Q Consensus 164 ~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~g 242 (499)
-.-.+|.+|+|+|+. |+..++||-+ ++.+.-+.++..+-...+....+.+ .-...+.|+|+|||||.+|
T Consensus 1867 ---l~~~~daiv~a~gst~prdlpv~grd-----~kgv~fame~l~~ntk~lld~~~d~--~~~~~~gkkvivigggdtg 1936 (2142)
T KOG0399|consen 1867 ---LKKENDAIVLATGSTTPRDLPVPGRD-----LKGVHFAMEFLEKNTKSLLDSVLDG--NYISAKGKKVIVIGGGDTG 1936 (2142)
T ss_pred ---HhhccCeEEEEeCCCCCcCCCCCCcc-----ccccHHHHHHHHHhHHhhhcccccc--ceeccCCCeEEEECCCCcc
Confidence 244699999999987 8888999964 2233333333222111111111100 1123456899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceEEEEEe----CC------CcCCCCCH----H-HHHHHHHHHHhCC--CE-----
Q 010844 243 VEFSGELSDFIMRDVRQRYSHVKDYIHVTLIE----AN------EILSSFDD----R-LRHYATTQLSKSG--VR----- 300 (499)
Q Consensus 243 ve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~----~~------~~l~~~~~----~-~~~~~~~~l~~~g--V~----- 300 (499)
-++.+.-.+.+. +.|.-++ +. ...|.+|. + -++.+.+..-+.- -.
T Consensus 1937 ~dcigtsvrhg~-------------~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~ 2003 (2142)
T KOG0399|consen 1937 TDCIGTSVRHGC-------------KSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKR 2003 (2142)
T ss_pred ccccccchhhcc-------------ceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeee
Confidence 999888777663 2221111 00 01122211 0 0111222211100 01
Q ss_pred EEeC---ceEEEeC----------Ce---EEECC-CcEEeeeEEEEcCCCCcc--hhcccCCCCCCCCCceeeC-CCCCC
Q 010844 301 LVRG---IVKDVDS----------QK---LILND-GTEVPYGLLVWSTGVGPS--TLVKSLDLPKSPGGRIGID-EWLRV 360 (499)
Q Consensus 301 v~~~---~v~~v~~----------~~---v~~~~-g~~i~~D~vi~a~G~~p~--~~~~~~~l~~~~~G~i~vd-~~l~~ 360 (499)
++.+ .|+.++- +. ++..+ .+.|+||+||+|.|+..+ ...+++++..|.++.|.+- +.+.+
T Consensus 2004 f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t 2083 (2142)
T KOG0399|consen 2004 FIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYST 2083 (2142)
T ss_pred eeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccc
Confidence 1111 2222211 11 11222 356899999999999887 3677888999988887764 44666
Q ss_pred CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 010844 361 PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 361 ~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
+.+.|||+|||-. | ..+...|+++|+.+|+.+....
T Consensus 2084 -~v~~vfaagdcrr-----g----qslvvwai~egrq~a~~vd~~~ 2119 (2142)
T KOG0399|consen 2084 -DVAKVFAAGDCRR-----G----QSLVVWAIQEGRQAARQVDELM 2119 (2142)
T ss_pred -cccceeecccccC-----C----ceEEEEEehhhhHHHHHHHHHh
Confidence 8999999999996 4 4567789999999999987643
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.84 E-value=7.1e-22 Score=181.26 Aligned_cols=188 Identities=27% Similarity=0.358 Sum_probs=126.4
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc-ch-hhhhccCCCCCccccchh--hhccccccCCCeEE-EEE
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP-LL-ASTCVGTLEFRSVAEPIA--RIQPAISREPGSYF-FLS 138 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~-~~-~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 138 (499)
||||||||+||++||.+|++.+++|+|||+.+...+.. .+ .................+ ++...+. ..++++ +.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLK-NRGVEIRLNA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHH-HHTHEEEHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccc-cceEEEeecc
Confidence 69999999999999999999999999999887544421 11 111100000000000000 2211111 246666 567
Q ss_pred EEEEEECCCCEEE-----EeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHH
Q 010844 139 HCAGIDTDNHVVH-----CETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLN 213 (499)
Q Consensus 139 ~v~~id~~~~~v~-----~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~ 213 (499)
++..|+...+.+. ..... .++..++.||+||+|||+.|+.|.+||. +......+..++..+...+.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~lviAtG~~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~-- 150 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVE------TGDGREIKYDYLVIATGSRPRTPNIPGE-EVAYFLRGVDDAQRFLELLE-- 150 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEE------TTTEEEEEEEEEEEESTEEEEEESSTTT-TTECBTTSEEHHHHHHTHSS--
T ss_pred ccccccccccccccCcccceeec------cCCceEecCCeeeecCccccceeecCCC-cccccccccccccccccccc--
Confidence 9999999888541 11101 1224689999999999999999999997 34455567777777655431
Q ss_pred HhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHH
Q 010844 214 LMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQ 293 (499)
Q Consensus 214 ~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~ 293 (499)
..++|+|||
T Consensus 151 ---------------~~~~v~VvG-------------------------------------------------------- 159 (201)
T PF07992_consen 151 ---------------SPKRVAVVG-------------------------------------------------------- 159 (201)
T ss_dssp ---------------TTSEEEEES--------------------------------------------------------
T ss_pred ---------------ccccccccc--------------------------------------------------------
Confidence 123888888
Q ss_pred HHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhc-ccCCCCCCCCCceeeCCCCCCCCCCCeEEeccc
Q 010844 294 LSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV-KSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDC 372 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~-~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~ 372 (499)
.+++ +..+++++++|++.||+++|+ +.|||||+|||
T Consensus 160 ------------------------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~ 196 (201)
T PF07992_consen 160 ------------------------------------------TEFLAEKLGVELDENGFIKVDENLQT-SVPGIYAAGDC 196 (201)
T ss_dssp ------------------------------------------TTTSTHHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGG
T ss_pred ------------------------------------------cccccccccccccccccccccccccc-ccccccccccc
Confidence 4444 677899999999999999999 89999999999
Q ss_pred ccc
Q 010844 373 SGY 375 (499)
Q Consensus 373 a~~ 375 (499)
+.+
T Consensus 197 a~~ 199 (201)
T PF07992_consen 197 AGI 199 (201)
T ss_dssp BEE
T ss_pred ccc
Confidence 974
No 84
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=162.20 Aligned_cols=258 Identities=21% Similarity=0.318 Sum_probs=159.7
Q ss_pred cEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcccccchhhhhccCCCCCcccc-chhhhccccccCCCeEEEEEEE
Q 010844 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAE-PIARIQPAISREPGSYFFLSHC 140 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v 140 (499)
+.+|||||+||.+||.+|+.. ..+|.||..++..--...+..+. ..++.-++.+ ....+.+.+. +|+.. |
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~-~ylekfdv~eq~~~elg~~f~-----~~~~~-v 73 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIG-QYLEKFDVKEQNCHELGPDFR-----RFLND-V 73 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHH-HHHHhcCccccchhhhcccHH-----HHHHh-h
Confidence 468999999999999999863 56899998875421111110000 0000001100 1111111110 23333 7
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVP 220 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 220 (499)
..++..++.+++++ +..+.|++|++|||.+|... ..|.+..+...++.+.++.++.++
T Consensus 74 ~~~~s~ehci~t~~-----------g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~kl---------- 131 (334)
T KOG2755|consen 74 VTWDSSEHCIHTQN-----------GEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCKL---------- 131 (334)
T ss_pred hhhccccceEEecC-----------CceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHHH----------
Confidence 77888888998877 24899999999999999754 344566777888888888888876
Q ss_pred CCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC-CCCHHHHHHHHHHHH---
Q 010844 221 GISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS-SFDDRLRHYATTQLS--- 295 (499)
Q Consensus 221 ~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~-~~~~~~~~~~~~~l~--- 295 (499)
.+.|.|.|+|.|-++.|++.++.. .+|++.... .+-. -+++.+.+.+...|+
T Consensus 132 -------~kaK~VlilgnGgia~El~yElk~----------------~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~ 188 (334)
T KOG2755|consen 132 -------VKAKIVLILGNGGIAMELTYELKI----------------LNVTWKIKDEGISATFFDPGAAEFYDINLRADR 188 (334)
T ss_pred -------hhcceEEEEecCchhHHHHHHhhc----------------ceeEEEecchhhhhcccCccHHHHhHhhhhccc
Confidence 345799999999999999999976 344443332 1111 122222222222221
Q ss_pred ---------------------------------------------hCCCEEEeCceEEEeC----CeEEECC-----CcE
Q 010844 296 ---------------------------------------------KSGVRLVRGIVKDVDS----QKLILND-----GTE 321 (499)
Q Consensus 296 ---------------------------------------------~~gV~v~~~~v~~v~~----~~v~~~~-----g~~ 321 (499)
++-+.+..+.+..+.. ..++-.+ ...
T Consensus 189 s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~q 268 (334)
T KOG2755|consen 189 STRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQ 268 (334)
T ss_pred ccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccce
Confidence 0001111111111110 0111111 136
Q ss_pred EeeeEEEEcCCCCcc-hhcccCCCCCCCCCceeeCCCCCCCCCCCeEEeccccc
Q 010844 322 VPYGLLVWSTGVGPS-TLVKSLDLPKSPGGRIGIDEWLRVPSVQDVFAVGDCSG 374 (499)
Q Consensus 322 i~~D~vi~a~G~~p~-~~~~~~~l~~~~~G~i~vd~~l~~~~~~~Ifa~GD~a~ 374 (499)
+.||.+++++|..|| ++.-...++..++|.+.||+.|++ +.|++||+||++.
T Consensus 269 lt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~t-slpdvFa~gDvct 321 (334)
T KOG2755|consen 269 LTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMET-SLPDVFAAGDVCT 321 (334)
T ss_pred eeeeEEEeccccCcCceEEecChhhhccccCeeehhhccc-cccceeeecceec
Confidence 779999999999999 566555677788899999999999 9999999999886
No 85
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.80 E-value=1.4e-17 Score=161.16 Aligned_cols=319 Identities=18% Similarity=0.213 Sum_probs=190.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (499)
-.++++|||||+||++||+.|++.|++|+|+|+++....+-....-. .+..+-...-+...+......++++++. ++
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~--FP~~dcs~C~LaP~m~~v~~hp~i~l~Tyae 200 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKT--FPTNDCSICILAPKMVEVSNHPNIELITYAE 200 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhcc--CCCcccchhhccchhhhhccCCceeeeeeee
Confidence 35789999999999999999999999999999999876552111100 0001101111222222344445555443 35
Q ss_pred EEEEECCCCEEEEe--ee--------------------------------------------------c-----------
Q 010844 140 CAGIDTDNHVVHCE--TV--------------------------------------------------T----------- 156 (499)
Q Consensus 140 v~~id~~~~~v~~~--~~--------------------------------------------------~----------- 156 (499)
|+.|+-.-..+++. .. +
T Consensus 201 V~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~ 280 (622)
T COG1148 201 VEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCE 280 (622)
T ss_pred eeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhh
Confidence 55543322111110 00 0
Q ss_pred ----Cc--cccCCCceeeeeCCeEEEcCCCCccCCCCCCccccCcc-CCCHHHHHHHHHHHHHHHhhcCCCC----CCHH
Q 010844 157 ----DE--LRTLEPWKFKISYDKLVIALGAEASTFGIHGVKENATF-LREVHHAQEIRRKLLLNLMLSDVPG----ISEE 225 (499)
Q Consensus 157 ----~~--~~~~~~~~~~i~yd~LViAtG~~~~~~~ipG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~ 225 (499)
.. .-+..++..++....+|+|||-.+....-.. ++.+. +.++-...++.+.+. +.-|. ..+.
T Consensus 281 ~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~--EyGYG~~~nVIT~lElErml~-----~~GPT~GkvlrpS 353 (622)
T COG1148 281 KACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKE--EYGYGKYPNVITNLELERMLN-----PNGPTGGKVLRPS 353 (622)
T ss_pred hcCCccccccCCCCcEEEEEeceEEEEccccccCcchhh--hcCCCCCcchhhHHHHHHHhc-----cCCCCCceEEecC
Confidence 00 0012345567889999999998876543221 22221 233434444433321 11111 0112
Q ss_pred HHhccccEEEe---CcCh--------HHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHH
Q 010844 226 EKSRLLHCVVV---GGGP--------TGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQ 293 (499)
Q Consensus 226 ~~~~~~~vvVv---GgG~--------~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~ 293 (499)
+.+..|+|+.| |.-. +-+.+...|.. ...++++||+ .+|+++..+ +. ++....++..+.
T Consensus 354 dg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKq--A~~Ike~~Pd----~~v~I~YmDiRa---fG~~yEefY~~~ 424 (622)
T COG1148 354 DGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQ--AQLIKERYPD----TDVTIYYMDIRA---FGKDYEEFYVRS 424 (622)
T ss_pred CCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhh--hhhhhhcCCC----cceeEEEEEeec---cCccHHHHHHhh
Confidence 23445677664 5433 33444444443 3355677777 788887765 43 333444555555
Q ss_pred HHhCCCEEEeCceEEEe---CCe--EEECC---C--cEEeeeEEEEcCCCCcch----hcccCCCCCCCCCceeeC-CCC
Q 010844 294 LSKSGVRLVRGIVKDVD---SQK--LILND---G--TEVPYGLLVWSTGVGPST----LVKSLDLPKSPGGRIGID-EWL 358 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~---~~~--v~~~~---g--~~i~~D~vi~a~G~~p~~----~~~~~~l~~~~~G~i~vd-~~l 358 (499)
-++.||+++.+++.++. ++. |..+| | .++++|+||+++|..|.+ +.+-+||+.+++|++... +.+
T Consensus 425 Q~~~gV~fIRGrvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl 504 (622)
T COG1148 425 QEDYGVRFIRGRVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKL 504 (622)
T ss_pred hhhhchhhhcCChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCc
Confidence 55789999999665553 333 33333 2 478999999999999963 566679999999998776 555
Q ss_pred CC--CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 359 RV--PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 359 ~~--~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
+. .+.++||.+|-|.. |+..+.++.||..||......+.
T Consensus 505 ~pv~s~~~GIflAG~aqg----------PkdI~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 505 RPVDSNRDGIFLAGAAQG----------PKDIADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ccccccCCcEEEeecccC----------CccHHHHHHHhHHHHHHHHHHhh
Confidence 53 26789999999885 89999999999999887776665
No 86
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.8e-17 Score=167.48 Aligned_cols=174 Identities=18% Similarity=0.146 Sum_probs=107.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccchh----------hh---hccCCC-----CCc---cc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPLLA----------ST---CVGTLE-----FRS---VA 117 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~~~----------~~---~~g~~~-----~~~---~~ 117 (499)
..+.+|+|||||++||++|++|++.|.. ++|+|++......+... .. ..+... ... +.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 4568999999999999999999999998 99999996443221110 00 000000 001 11
Q ss_pred cchhhhccccccCCCeEEEE-EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCC--CCccCCCCCCcccc-
Q 010844 118 EPIARIQPAISREPGSYFFL-SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALG--AEASTFGIHGVKEN- 193 (499)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~-~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG--~~~~~~~ipG~~~~- 193 (499)
..+......+.....+.+.. .++...+.+.+.+++....++ ..++.+|+||+||| +.|+.|.++|.++.
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~-------~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~ 158 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGG-------TGELTADFVVVATGHLSEPYIPDFAGLDEFK 158 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCC-------eeeEecCEEEEeecCCCCCCCCCCCCccCCC
Confidence 12222222222222333322 233444444456665543322 11278999999999 56888999998642
Q ss_pred --CccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Q 010844 194 --ATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVT 271 (499)
Q Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vt 271 (499)
.++...+.+. +.-++|+|+|||+|.||+++|.+|++.+ .+||
T Consensus 159 g~~~HS~~~~~~----------------------~~~~GKrV~VIG~GaSA~di~~~l~~~g--------------a~vt 202 (443)
T COG2072 159 GRILHSADWPNP----------------------EDLRGKRVLVIGAGASAVDIAPELAEVG--------------ASVT 202 (443)
T ss_pred ceEEchhcCCCc----------------------cccCCCeEEEECCCccHHHHHHHHHhcC--------------CeeE
Confidence 1222222111 2245679999999999999999999987 7888
Q ss_pred EEeCC
Q 010844 272 LIEAN 276 (499)
Q Consensus 272 lv~~~ 276 (499)
++.|.
T Consensus 203 ~~qRs 207 (443)
T COG2072 203 LSQRS 207 (443)
T ss_pred EEecC
Confidence 88886
No 87
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=3.5e-17 Score=164.28 Aligned_cols=227 Identities=17% Similarity=0.142 Sum_probs=136.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchh--------h-----------hhccCC----------
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLA--------S-----------TCVGTL---------- 111 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~--------~-----------~~~g~~---------- 111 (499)
..++|+|||||+|||.+|+.|.++|++++++|+.+.....+... . ...+..
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 35799999999999999999999999999999997654332211 0 111111
Q ss_pred ---CCCccccchhhhccccccCCCeEEEEEEEEEEECCC-CEEEEeeecCccccCCCceeeeeCCeEEEcCCCC--ccCC
Q 010844 112 ---EFRSVAEPIARIQPAISREPGSYFFLSHCAGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAE--ASTF 185 (499)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~--~~~~ 185 (499)
+..++...++.+...+.....++| ..+|..++... +.+.+...+... ...+.-||.||+|||.. |+.|
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~-----~~~~~ifd~VvVctGh~~~P~~P 158 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGT-----QIEEEIFDAVVVCTGHYVEPRIP 158 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCc-----ceeEEEeeEEEEcccCcCCCCCC
Confidence 011222233333322222222333 45667777665 344444322211 02477899999999976 7888
Q ss_pred CCCCcc--c---cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHh
Q 010844 186 GIHGVK--E---NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQR 260 (499)
Q Consensus 186 ~ipG~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~ 260 (499)
.+||.. . ..++..++.. .+..+.|+|+|||+|+||.|++.+++...
T Consensus 159 ~~~g~~~~~f~G~~iHS~~Yk~----------------------~e~f~~k~VlVIG~g~SG~DIs~d~~~~a------- 209 (448)
T KOG1399|consen 159 QIPGPGIESFKGKIIHSHDYKS----------------------PEKFRDKVVLVVGCGNSGMDISLDLLRVA------- 209 (448)
T ss_pred cCCCCchhhcCCcceehhhccC----------------------cccccCceEEEECCCccHHHHHHHHHHhc-------
Confidence 888732 1 1222222111 11234479999999999999999998876
Q ss_pred cCCCCCceEEEEEeC----CCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCCe-EEECCCcEEeeeEEEEcCCCCc
Q 010844 261 YSHVKDYIHVTLIEA----NEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQK-LILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 261 ~~~~~~~~~Vtlv~~----~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~-v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+|++... ....+. ....++..+.. |..+++++ +.++++....+|.||+|||+.-
T Consensus 210 -------k~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~-i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y 269 (448)
T KOG1399|consen 210 -------KEVHLSVVSPKVHVEPPE------------ILGENLWQVPS-IKSFTEDGSVFEKGGPVERVDRIIFCTGYKY 269 (448)
T ss_pred -------cCcceeeecccccccccc------------eeecceEEccc-cccccCcceEEEcCceeEEeeeEEEeeeeEe
Confidence 55665532 000000 00112333333 67777777 4556677889999999999987
Q ss_pred c-hhcccC
Q 010844 336 S-TLVKSL 342 (499)
Q Consensus 336 ~-~~~~~~ 342 (499)
. +++...
T Consensus 270 ~fPfl~~~ 277 (448)
T KOG1399|consen 270 KFPFLETL 277 (448)
T ss_pred ecceeccC
Confidence 6 555443
No 88
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.66 E-value=1.9e-15 Score=142.46 Aligned_cols=304 Identities=19% Similarity=0.184 Sum_probs=167.1
Q ss_pred CCCcEEEECCchHHHHHHHhccC--CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDT--SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
..++|+|||+||||+.+|..|.+ .+++|+|+|+.+.. |.-.-++++....+...+...+... +......|+..
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP-FGLvRyGVAPDHpEvKnvintFt~~----aE~~rfsf~gN 93 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP-FGLVRYGVAPDHPEVKNVINTFTKT----AEHERFSFFGN 93 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc-cceeeeccCCCCcchhhHHHHHHHH----hhccceEEEec
Confidence 34699999999999999998877 46899999998753 2222334444444444333334333 33345555432
Q ss_pred EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCC-ccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhc
Q 010844 139 HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAE-ASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLS 217 (499)
Q Consensus 139 ~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~-~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (499)
--. .+.+.+.. -+-.||.+|+|.|+. ++..+|||.+ +..+..+..+.....
T Consensus 94 v~v-----G~dvsl~e------------L~~~ydavvLaYGa~~dR~L~IPGe~-----l~~V~Sarefv~Wyn------ 145 (468)
T KOG1800|consen 94 VKV-----GRDVSLKE------------LTDNYDAVVLAYGADGDRRLDIPGEE-----LSGVISAREFVGWYN------ 145 (468)
T ss_pred cee-----cccccHHH------------HhhcccEEEEEecCCCCcccCCCCcc-----cccceehhhhhhhcc------
Confidence 111 12333333 244699999999987 7788999964 222223333333321
Q ss_pred CCCCCC-HHHHhccccEEEeCcChHHHHHHHHHHHHHHHHH-HHhcCC-------CCCceEEEEEeCCCcC-CCC-----
Q 010844 218 DVPGIS-EEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDV-RQRYSH-------VKDYIHVTLIEANEIL-SSF----- 282 (499)
Q Consensus 218 ~~p~~~-~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~-~~~~~~-------~~~~~~Vtlv~~~~~l-~~~----- 282 (499)
.+|+.. -+..-...+|+|||.|++++++|..|.......+ ..+.|. ..+-.+|+|+-|...+ ..|
T Consensus 146 g~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKEL 225 (468)
T KOG1800|consen 146 GLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKEL 225 (468)
T ss_pred CCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHH
Confidence 111100 0112235699999999999999999865332222 111221 1233678888765221 111
Q ss_pred ---------------------------------CHHHHHHHHHHHHhC---------CCE------------EEeC--ce
Q 010844 283 ---------------------------------DDRLRHYATTQLSKS---------GVR------------LVRG--IV 306 (499)
Q Consensus 283 ---------------------------------~~~~~~~~~~~l~~~---------gV~------------v~~~--~v 306 (499)
.+++.+.+.+.++++ +.+ |..+ .|
T Consensus 226 RE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~v 305 (468)
T KOG1800|consen 226 REVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADGV 305 (468)
T ss_pred HHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCcccc
Confidence 012222222222220 111 1101 01
Q ss_pred EEEeCC--------eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCCCCCCceeeCCCCCCC---CCCCeEEecccccc
Q 010844 307 KDVDSQ--------KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSGY 375 (499)
Q Consensus 307 ~~v~~~--------~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~l~~~---~~~~Ifa~GD~a~~ 375 (499)
.++.-. .+.+.+-++++|++++.++|++..++.. +++.|..-.+.-|...++. -.|++|+.|-|..
T Consensus 306 ~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~--gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~- 382 (468)
T KOG1800|consen 306 SGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDS--GIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKH- 382 (468)
T ss_pred cceEEEeeeehhhcccccCceEeeccceeEeeeeecccccCC--CCCcccccCcccCCCceEEeeccCCceEEEeeecc-
Confidence 111000 1111223579999999999999876543 3444433223333333331 3699999999996
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 376 LESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 376 ~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|. ......++++|..+|..|.+.++
T Consensus 383 ----GP---~GvIattm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800|consen 383 ----GP---TGVIATTMQDAFEVADTIVQDLK 407 (468)
T ss_pred ----CC---cceeeehhhhHHHHHHHHHHHHH
Confidence 32 23345678889999999888776
No 89
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.64 E-value=7e-17 Score=148.35 Aligned_cols=167 Identities=21% Similarity=0.199 Sum_probs=90.3
Q ss_pred EEECCchHHHHHHHhccCCCCe-EEEEcCCCCcccccc------------hhhhhccCCCCC----------------cc
Q 010844 66 VVLGSGWAGCRLMKGIDTSLYD-VVCVSPRNHMVFTPL------------LASTCVGTLEFR----------------SV 116 (499)
Q Consensus 66 vIIGgG~aGl~aA~~L~~~g~~-V~lie~~~~~~~~~~------------~~~~~~g~~~~~----------------~~ 116 (499)
+|||||++||++|..|.+.|.+ |+|||+++....... ......+..+.. ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999999855422211 000000000000 00
Q ss_pred ccchhhhccccccCCCeEE-EEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC--CccCCCCCC-ccc
Q 010844 117 AEPIARIQPAISREPGSYF-FLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA--EASTFGIHG-VKE 192 (499)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~-~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~--~~~~~~ipG-~~~ 192 (499)
...+.+++..+.+..+..+ ...+|+++..+++.+.+...+ ..++.+|+||+|||. .|+.|.+|| ...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~---------~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~ 151 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRD---------GRTIRADRVVLATGHYSHPRIPDIPGSAFR 151 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETT---------S-EEEEEEEEE---SSCSB---S-TTGGCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEe---------cceeeeeeEEEeeeccCCCCcccccccccc
Confidence 0111222222222233333 346888888777655555421 147889999999995 688888999 333
Q ss_pred cCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEE
Q 010844 193 NATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTL 272 (499)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtl 272 (499)
..++...+.+. ...+.++|+|||+|.+|+|+|..|.+.+ .+|++
T Consensus 152 ~~~h~~~~~~~----------------------~~~~~k~V~VVG~G~SA~d~a~~l~~~g--------------~~V~~ 195 (203)
T PF13738_consen 152 PIIHSADWRDP----------------------EDFKGKRVVVVGGGNSAVDIAYALAKAG--------------KSVTL 195 (203)
T ss_dssp EEEEGGG-STT----------------------GGCTTSEEEEE--SHHHHHHHHHHTTTC--------------SEEEE
T ss_pred ceEehhhcCCh----------------------hhcCCCcEEEEcChHHHHHHHHHHHhhC--------------CEEEE
Confidence 33333222111 1123479999999999999999998876 89999
Q ss_pred EeCCC
Q 010844 273 IEANE 277 (499)
Q Consensus 273 v~~~~ 277 (499)
+.|.+
T Consensus 196 ~~R~~ 200 (203)
T PF13738_consen 196 VTRSP 200 (203)
T ss_dssp EESS-
T ss_pred EecCC
Confidence 99864
No 90
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.59 E-value=5.7e-15 Score=145.21 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=94.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcccccch--hhhhccCCCCCc-----------------------
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVGTLEFRS----------------------- 115 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~~~~~--~~~~~g~~~~~~----------------------- 115 (499)
.+++++||.||++|+.|..|.+.+ .++..+|+++.+.|+|.+ ++.-.......+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 368999999999999999998765 899999999999888643 222111111110
Q ss_pred -----------cccchhhhccccccC-CCeEEEEEEEEEEECCCC----EEEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010844 116 -----------VAEPIARIQPAISRE-PGSYFFLSHCAGIDTDNH----VVHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 116 -----------~~~~~~~~~~~~~~~-~~~~~~~~~v~~id~~~~----~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
....+.++....+.. .....+..+|+.|++... .+.+...+ ..+....+.++.||||||
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-----~~g~~~~~~ar~vVla~G 156 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-----SDGDGETYRARNVVLATG 156 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-----TTS-EEEEEESEEEE---
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-----cCCCeeEEEeCeEEECcC
Confidence 000122221111111 221334678999887653 24433311 112346899999999999
Q ss_pred CCccCCCCCC-cc--ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHH
Q 010844 180 AEASTFGIHG-VK--ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (499)
Q Consensus 180 ~~~~~~~ipG-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~ 256 (499)
..|..|..-. .. +.+++..++..... .....++|+|||||.+|.|++..|.+.+
T Consensus 157 ~~P~iP~~~~~~~~~~~v~Hss~~~~~~~--------------------~~~~~~~V~VVGgGQSAAEi~~~L~~~~--- 213 (341)
T PF13434_consen 157 GQPRIPEWFQDLPGSPRVFHSSEYLSRID--------------------QSLAGKRVAVVGGGQSAAEIFLDLLRRG--- 213 (341)
T ss_dssp -EE---GGGGGGTT-TTEEEGGGHHHHHT-------------------------EEEEEE-SSHHHHHHHHHHHHH----
T ss_pred CCCCCCcchhhcCCCCCEEEehHhhhccc--------------------cccCCCeEEEECCcHhHHHHHHHHHhCC---
Confidence 8887764322 21 34444443322210 0133469999999999999999998765
Q ss_pred HHHhcCCCCCceEEEEEeCCC
Q 010844 257 VRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
+..+|+++.|+.
T Consensus 214 ---------~~~~V~~i~R~~ 225 (341)
T PF13434_consen 214 ---------PEAKVTWISRSP 225 (341)
T ss_dssp ---------TTEEEEEEESSS
T ss_pred ---------CCcEEEEEECCC
Confidence 227999999873
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.55 E-value=1.2e-13 Score=138.70 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=33.1
Q ss_pred CCCcEEEECCchHHHHHHHhcc-CCCCeEEEEcCCCCcc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGID-TSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~-~~g~~V~lie~~~~~~ 98 (499)
..++|+||||||||++||.+|. +.|++|+|+|+.+...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 4578999999999999999764 5799999999998764
No 92
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.51 E-value=3.5e-12 Score=122.46 Aligned_cols=295 Identities=17% Similarity=0.166 Sum_probs=171.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcccccch--hhhhcc------CCCCCccc-------------
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMVFTPLL--ASTCVG------TLEFRSVA------------- 117 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~~~~~~--~~~~~g------~~~~~~~~------------- 117 (499)
+...|++.||-||+-|+.|..|.+.+ .++..+|+.+.|.|+|.+ ++.-.. .....+-.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~ 82 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG 82 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence 34579999999999999999998864 789999999999988642 221111 00000000
Q ss_pred ---------------cchhhhccccccC-CCeEEEEEEEE---EEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcC
Q 010844 118 ---------------EPIARIQPAISRE-PGSYFFLSHCA---GIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIAL 178 (499)
Q Consensus 118 ---------------~~~~~~~~~~~~~-~~~~~~~~~v~---~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAt 178 (499)
..+.++....+.. +.++ ...+|+ .+|.+..........+ ...+.+..|||++
T Consensus 83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~r-fg~~V~~i~~~~~d~~~~~~~~t~~--------~~~y~ar~lVlg~ 153 (436)
T COG3486 83 RLYEFLNYETFHIPRREYNDYCQWAASQLPSLR-FGEEVTDISSLDGDAVVRLFVVTAN--------GTVYRARNLVLGV 153 (436)
T ss_pred hHhhhhhhhcccccHHHHHHHHHHHHhhCCccc-cCCeeccccccCCcceeEEEEEcCC--------CcEEEeeeEEEcc
Confidence 0011111100000 1111 235666 4444443332222111 1378999999999
Q ss_pred CCCccCCC-CCCcc-ccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHHHHHHHHHH
Q 010844 179 GAEASTFG-IHGVK-ENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGELSDFIMRD 256 (499)
Q Consensus 179 G~~~~~~~-ipG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~ 256 (499)
|.+|..|+ +..+. +.+++... +..+. .+.....+|+|||+|-+|.|+-..|....
T Consensus 154 G~~P~IP~~f~~l~~~~vfHss~------~~~~~--------------~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~--- 210 (436)
T COG3486 154 GTQPYIPPCFRSLIGERVFHSSE------YLERH--------------PELLQKRSVTVIGSGQSAAEIFLDLLNSQ--- 210 (436)
T ss_pred CCCcCCChHHhCcCccceeehHH------HHHhh--------------HHhhcCceEEEEcCCccHHHHHHHHHhCC---
Confidence 99998873 23322 23333222 11111 11112235999999999999988775422
Q ss_pred HHHhcCCCCCceEEEEEeCC-CcCCC---------CCHHHHHH-----------H-------------------HHH---
Q 010844 257 VRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHY-----------A-------------------TTQ--- 293 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~-~~l~~---------~~~~~~~~-----------~-------------------~~~--- 293 (499)
+. .+.++.++.|+ ..+|. |.|+..++ + -+.
T Consensus 211 -----~~--~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~ 283 (436)
T COG3486 211 -----PP--QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYE 283 (436)
T ss_pred -----CC--cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHH
Confidence 21 12467788876 45542 12221111 1 111
Q ss_pred --HH--hCCCEEEeC-ceEEEeCCe---EEEC-------CCcEEeeeEEEEcCCCCcc--hhcccCC--CCCCCCCceee
Q 010844 294 --LS--KSGVRLVRG-IVKDVDSQK---LILN-------DGTEVPYGLLVWSTGVGPS--TLVKSLD--LPKSPGGRIGI 354 (499)
Q Consensus 294 --l~--~~gV~v~~~-~v~~v~~~~---v~~~-------~g~~i~~D~vi~a~G~~p~--~~~~~~~--l~~~~~G~i~v 354 (499)
+. +.+|.++.+ +|..+++.+ +.+. +.+++++|.||+|||++.. +++..+. +..|++|...|
T Consensus 284 ~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I 363 (436)
T COG3486 284 QSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVI 363 (436)
T ss_pred HHhcCCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEe
Confidence 11 345777777 788887653 4431 2357899999999999954 4766553 66788999999
Q ss_pred CCCCCCCCC----CCeEEeccccccccCCCCCCCCchHHHHHHHHHH
Q 010844 355 DEWLRVPSV----QDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397 (499)
Q Consensus 355 d~~l~~~~~----~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~ 397 (499)
+..+++... -.||+.|-+....+ .| -|.+.-.|.+.+.+
T Consensus 364 ~~dY~v~~~~~~~~~ifvqn~e~htHG-ig---~pdLsl~a~Raa~I 406 (436)
T COG3486 364 GRDYRVLWDGPGKGRIFVQNAELHTHG-IG---APDLSLGAWRAAVI 406 (436)
T ss_pred cCceeeecCCCCcceEEEecccccccc-cC---CccchHHHHHHHHH
Confidence 988766332 36999998875322 23 36666667665554
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.45 E-value=2.6e-12 Score=129.34 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=103.5
Q ss_pred EEeCcChHHHHHH-HHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe
Q 010844 234 VVVGGGPTGVEFS-GELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD 310 (499)
Q Consensus 234 vVvGgG~~gve~A-~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~ 310 (499)
+|++.|.+|+|.+ ..++++... -+.+|+++... +.++.+ ++.+.+.+.+++.|++++++ +|.+++
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~----------LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~ 286 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEA----------LGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAE 286 (422)
T ss_pred EEEECceecCCChHHHHHHHHHH----------HCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 7788999999999 555432110 02899999875 666654 78889999999999999999 888876
Q ss_pred C--CeE---EECCC--cEEeeeEEEEcCCCCcch-hccc--------CCCCC--C-------------C----CCceeeC
Q 010844 311 S--QKL---ILNDG--TEVPYGLLVWSTGVGPST-LVKS--------LDLPK--S-------------P----GGRIGID 355 (499)
Q Consensus 311 ~--~~v---~~~~g--~~i~~D~vi~a~G~~p~~-~~~~--------~~l~~--~-------------~----~G~i~vd 355 (499)
. +.+ ...++ .++++|.||+|+|..+.. +..+ +++++ . + .-.|.||
T Consensus 287 ~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d 366 (422)
T PRK05329 287 FEGGRVTAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATD 366 (422)
T ss_pred EeCCEEEEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceEC
Confidence 3 333 23344 358999999999987653 2111 02222 0 0 1127777
Q ss_pred CCCCC------CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 010844 356 EWLRV------PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRI 405 (499)
Q Consensus 356 ~~l~~------~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~ 405 (499)
+.||. +.++|+||+|++..-+++.-. ---.-+|+..|-+||++|...
T Consensus 367 ~~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~~---~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 367 ATLRPLDSQGGPVIENLYAAGAVLGGYDPIRE---GCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CCcCcccCCCCeeccceEEeeehhcCCchHHh---CCCchhHHHHHHHHHHHHHHh
Confidence 77775 257999999999863221100 001237888888888888654
No 94
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=5.7e-10 Score=110.38 Aligned_cols=175 Identities=15% Similarity=0.129 Sum_probs=96.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC---CCeEEEEcCCCCcc----cccchh----hhhccCCC------------------
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPRNHMV----FTPLLA----STCVGTLE------------------ 112 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~---g~~V~lie~~~~~~----~~~~~~----~~~~g~~~------------------ 112 (499)
+++|+|||||++|+.+|.+|.+. ...|+|||+.+.+. |++..+ .+..+.++
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~ 80 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQL 80 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhcc
Confidence 46899999999999999999763 22399999886542 221111 01111110
Q ss_pred ----------CCc--------cccchhhhccccccCC---CeEEEEEEEEEEECC--CCEEEEeeecCccccCCCceeee
Q 010844 113 ----------FRS--------VAEPIARIQPAISREP---GSYFFLSHCAGIDTD--NHVVHCETVTDELRTLEPWKFKI 169 (499)
Q Consensus 113 ----------~~~--------~~~~~~~~~~~~~~~~---~~~~~~~~v~~id~~--~~~v~~~~~~~~~~~~~~~~~~i 169 (499)
.+. +...+++.+..+.... .+.+++.+++++... .....+.. .++ ...
T Consensus 81 ~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~-~~g--------~~~ 151 (474)
T COG4529 81 QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTT-ADG--------PSE 151 (474)
T ss_pred cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEec-CCC--------Cee
Confidence 000 0001111111111112 377788888888766 22222222 222 477
Q ss_pred eCCeEEEcCCCCccCCCC-----CCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHH
Q 010844 170 SYDKLVIALGAEASTFGI-----HGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVE 244 (499)
Q Consensus 170 ~yd~LViAtG~~~~~~~i-----pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve 244 (499)
.+|-+|+|||..+.++.. +|... .+.+...+..+ ...+..-+|+|+|.|.+-++
T Consensus 152 ~ad~~Vlatgh~~~~~~~~~~~~~~~~~---~ia~~~~~~~l------------------d~v~~~drVli~GsgLt~~D 210 (474)
T COG4529 152 IADIIVLATGHSAPPADPAARDLKGSPR---LIADPYPANAL------------------DGVDADDRVLIVGSGLTSID 210 (474)
T ss_pred eeeEEEEeccCCCCCcchhhhccCCCcc---eeccccCCccc------------------ccccCCCceEEecCCchhHH
Confidence 899999999977544332 11111 11111111000 01122237999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc
Q 010844 245 FSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (499)
Q Consensus 245 ~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 278 (499)
....+.+.+. ..+||++.|.-+
T Consensus 211 ~v~~l~~~gh------------~g~It~iSRrGl 232 (474)
T COG4529 211 QVLVLRRRGH------------KGPITAISRRGL 232 (474)
T ss_pred HHHHHhccCC------------ccceEEEecccc
Confidence 9999988663 268899887533
No 95
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.27 E-value=2.8e-11 Score=93.01 Aligned_cols=74 Identities=34% Similarity=0.560 Sum_probs=66.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v 309 (499)
+|+|||||++|+|+|..|++++ .+|+++++. .+++.+++++.+.+.+.|++.||+++++ .+.++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--------------~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i 66 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--------------KEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEI 66 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--------------cEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 5899999999999999999987 899999997 6778999999999999999999999999 89988
Q ss_pred eCC--e--EEECCC
Q 010844 310 DSQ--K--LILNDG 319 (499)
Q Consensus 310 ~~~--~--v~~~~g 319 (499)
+.+ + |+++||
T Consensus 67 ~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 67 EKDGDGVEVTLEDG 80 (80)
T ss_dssp EEETTSEEEEEETS
T ss_pred EEeCCEEEEEEecC
Confidence 653 3 666665
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.12 E-value=2.1e-09 Score=103.84 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=54.8
Q ss_pred CCcCCC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCC--CCcc--------hh
Q 010844 276 NEILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTG--VGPS--------TL 338 (499)
Q Consensus 276 ~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G--~~p~--------~~ 338 (499)
++++|. -...+.+.+...+++.||+++++ +|.+++.+ .+.+.+|+++.||.+|+|+| ..|. ++
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~i 180 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPI 180 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHH
Confidence 477775 24578888999999999999999 89999776 46667888999999999999 4442 35
Q ss_pred cccCCCCC
Q 010844 339 VKSLDLPK 346 (499)
Q Consensus 339 ~~~~~l~~ 346 (499)
++..|+++
T Consensus 181 A~~~G~~I 188 (408)
T COG2081 181 ARQFGHTI 188 (408)
T ss_pred HHHcCCcc
Confidence 56666443
No 97
>PRK09897 hypothetical protein; Provisional
Probab=98.99 E-value=5.1e-09 Score=108.60 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=100.0
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCcc----cccc------hhh---------------hhc------
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMV----FTPL------LAS---------------TCV------ 108 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~----~~~~------~~~---------------~~~------ 108 (499)
+++|+|||||++|+++|.+|.+. .++|+|||++.... |.+. +.. .+.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~ 80 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH 80 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH
Confidence 46899999999999999999764 46899999975432 2210 000 000
Q ss_pred -------------cCCCCC-ccccchhhhccccc---cCCC--eEEE-EEEEEEEECCCCEEEEeeecCccccCCCceee
Q 010844 109 -------------GTLEFR-SVAEPIARIQPAIS---REPG--SYFF-LSHCAGIDTDNHVVHCETVTDELRTLEPWKFK 168 (499)
Q Consensus 109 -------------g~~~~~-~~~~~~~~~~~~~~---~~~~--~~~~-~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~ 168 (499)
+...++ ....+++..+..+. ...+ +.++ ..+|++|+.....+.+...+++ ..
T Consensus 81 ~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg--------~~ 152 (534)
T PRK09897 81 LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL--------PS 152 (534)
T ss_pred HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCC--------eE
Confidence 000011 01111222211111 1122 4544 4489999887777766542221 36
Q ss_pred eeCCeEEEcCCCCccCCCCCCccccCccCCCHHHHHHHHHHHHHHHhhcCCCCCCHHHHhccccEEEeCcChHHHHHHHH
Q 010844 169 ISYDKLVIALGAEASTFGIHGVKENATFLREVHHAQEIRRKLLLNLMLSDVPGISEEEKSRLLHCVVVGGGPTGVEFSGE 248 (499)
Q Consensus 169 i~yd~LViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~vvVvGgG~~gve~A~~ 248 (499)
+.+|+||+|||..+..+ .++. . .+....+ +... ....+ ..+|+|+|.|.++++++..
T Consensus 153 i~aD~VVLAtGh~~p~~-~~~~-~-~yi~~pw-~~~~----------~~~i~---------~~~V~I~GtGLt~iD~v~~ 209 (534)
T PRK09897 153 ETFDLAVIATGHVWPDE-EEAT-R-TYFPSPW-SGLM----------EAKVD---------ACNVGIMGTSLSGLDAAMA 209 (534)
T ss_pred EEcCEEEECCCCCCCCC-Chhh-c-cccCCCC-cchh----------hcCCC---------CCeEEEECCCHHHHHHHHH
Confidence 89999999999753211 1111 1 1111111 1100 00111 2489999999999999999
Q ss_pred HHHHHHHHHH--------HhcCCCCCceEEEEEeCCCcC
Q 010844 249 LSDFIMRDVR--------QRYSHVKDYIHVTLIEANEIL 279 (499)
Q Consensus 249 l~~~~~~~~~--------~~~~~~~~~~~Vtlv~~~~~l 279 (499)
|...+. .+. -.|.....+.+|+.+.|.-++
T Consensus 210 Lt~~gG-~F~~~~~~~~~l~y~~sg~~~~I~a~SRrGl~ 247 (534)
T PRK09897 210 VAIQHG-SFIEDDKQHVVFHRDNASEKLNITLMSRTGIL 247 (534)
T ss_pred HHhcCC-ceeccCCCcceeeecCCCCCceEEEEeCCCCC
Confidence 986532 111 111111244688888876444
No 98
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.76 E-value=7.2e-07 Score=89.15 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC---eEEECCC--cEEeeeEEEEcCCCC-cchhcccC--------CCC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ---KLILNDG--TEVPYGLLVWSTGVG-PSTLVKSL--------DLP 345 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~---~v~~~~g--~~i~~D~vi~a~G~~-p~~~~~~~--------~l~ 345 (499)
+.++.+.+.+.+++.|++++.+ +|.+++ ++ .+.+.++ .++.+|.+|+|+|.. +..+++.+ +++
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~ 341 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLD 341 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCC
Confidence 4688888999999999999998 888865 33 3444555 479999999999999 66554443 233
Q ss_pred C----CC---------------CCceeeCCCCCC----CCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010844 346 K----SP---------------GGRIGIDEWLRV----PSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 346 ~----~~---------------~G~i~vd~~l~~----~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
+ +. .-.|.+|++||. ..++|+||+|-+..-.++.-. ---.-+|+..|-+||++|
T Consensus 342 v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~---gcG~GVai~Ta~~aa~~i 418 (419)
T TIGR03378 342 VLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE---GCGSGVAVSTALHAAEQI 418 (419)
T ss_pred cCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc---CCCchhHHHHHHHHHHhh
Confidence 2 10 113789999984 138999999998863321100 001236788888888776
No 99
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.75 E-value=1.3e-07 Score=94.53 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEE
Q 010844 257 VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 257 ~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~ 329 (499)
+.+.+|.+.+...--+.... ..+ .+..+.+.+.+.+++.|++++.+ +|++++. + +|.+.+|+ +.+|.||+
T Consensus 121 ~~~~~p~~~~~~~~~~~~~~~g~i--~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~ 197 (358)
T PF01266_consen 121 LRELFPFLNPRIEGGVFFPEGGVI--DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVL 197 (358)
T ss_dssp HHHHSTTSSTTTEEEEEETTEEEE--EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE
T ss_pred hhhhhcccccchhhhhcccccccc--cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEe
Confidence 34455655543343444333 211 24678888889999999999999 8998864 3 37788887 99999999
Q ss_pred cCCCCcchhcccCCC
Q 010844 330 STGVGPSTLVKSLDL 344 (499)
Q Consensus 330 a~G~~p~~~~~~~~l 344 (499)
|+|.....++..++.
T Consensus 198 a~G~~s~~l~~~~~~ 212 (358)
T PF01266_consen 198 AAGAWSPQLLPLLGL 212 (358)
T ss_dssp --GGGHHHHHHTTTT
T ss_pred cccccceeeeecccc
Confidence 999988776666654
No 100
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.72 E-value=4.5e-08 Score=98.55 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=40.9
Q ss_pred CCcCCCC--CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEECCCcEEeeeEEEEcCCCCc
Q 010844 276 NEILSSF--DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 276 ~~~l~~~--~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~---v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+++.|.- ..++.+.+.+.+++.||+++.+ +|.+++ +++ |.+++++++.||.||+|+|-..
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 3555543 3567788889999999999999 899985 344 6666778999999999999764
No 101
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.67 E-value=1.8e-07 Score=91.09 Aligned_cols=91 Identities=23% Similarity=0.321 Sum_probs=74.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc------------CCCC-----CHHHHHHHHHHH
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI------------LSSF-----DDRLRHYATTQL 294 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~------------l~~~-----~~~~~~~~~~~l 294 (499)
+|+|||||+.|+++|..|.+.+ .+|+++++.+. +|.+ +.++...+.+.+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--------------LKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHH
Confidence 6999999999999999998876 78999997431 1333 257788888889
Q ss_pred HhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 295 SKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.|++++..+|.+++.+ .+.+++++++.+|.+|+|+|..|+
T Consensus 68 ~~~gv~~~~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 68 VKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHcCCeEEEEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 999999988878888764 466677789999999999999886
No 102
>PLN02463 lycopene beta cyclase
Probab=98.65 E-value=1.6e-07 Score=95.96 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccc-------h-----hhhhccCCCC----------C---
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPL-------L-----ASTCVGTLEF----------R--- 114 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~-------~-----~~~~~g~~~~----------~--- 114 (499)
...++|+|||||+||+++|..|++.|++|+|||+++...+... + .......... .
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 4457999999999999999999999999999999764322100 0 0000000000 0
Q ss_pred -c---c-ccchhh-hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010844 115 -S---V-AEPIAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 115 -~---~-~~~~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
. + ...+.+ +.... ...++.++.++|++|+.++..+.+... ++ .++.+|+||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~-~~~GV~~~~~~V~~I~~~~~~~~V~~~-dG--------~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERC-IANGVQFHQAKVKKVVHEESKSLVVCD-DG--------VKIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHH-hhcCCEEEeeEEEEEEEcCCeEEEEEC-CC--------CEEEcCEEEECcCCCcC
Confidence 0 0 001111 11112 235788888899999877665544431 12 37999999999998754
No 103
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.57 E-value=5.6e-07 Score=89.96 Aligned_cols=64 Identities=17% Similarity=0.295 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcE-EeeeEEEEcCCCCcchhcccCCCCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTE-VPYGLLVWSTGVGPSTLVKSLDLPKS 347 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~-i~~D~vi~a~G~~p~~~~~~~~l~~~ 347 (499)
.++...+.+.+.++|++++.+ +|..++. + .+.+.+|++ ++|+.||.|.|.....+++..+++.+
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~ 223 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPED 223 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcc
Confidence 456777778888889999999 8887754 3 345567766 99999999999999988888876653
No 104
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.54 E-value=2.9e-07 Score=95.14 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHh----CC--CEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010844 284 DRLRHYATTQLSK----SG--VRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~~----~g--V~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+...+.+.+++ .| ++++.+ +|.+++.+ .|.+++| ++.+|.||+|+|.....+++.+|+.
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~ 283 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCC
Confidence 4677777788888 77 888888 89888643 3555555 7999999999999988888877764
No 105
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.52 E-value=2.7e-07 Score=89.65 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=32.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 47999999999999999999999999999998654
No 106
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.51 E-value=1.9e-07 Score=92.20 Aligned_cols=109 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCC-CCccc---ccchhhhhcc-----------C------------------
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR-NHMVF---TPLLASTCVG-----------T------------------ 110 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~-~~~~~---~~~~~~~~~g-----------~------------------ 110 (499)
||+|||||.||+.||..+++.|++|+|+..+ +.+.. .|.+.+...| .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 6999999999999999999999999999433 22211 1221111110 0
Q ss_pred --CCCCcc--ccc---hhh-hccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCC
Q 010844 111 --LEFRSV--AEP---IAR-IQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGA 180 (499)
Q Consensus 111 --~~~~~~--~~~---~~~-~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~ 180 (499)
+..+.. ..+ +.. +...+...+++.+++++|+++..+++.|.-....++ ..+.+|.+|+|||+
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g--------~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDG--------EEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTS--------EEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCC--------CEEecCEEEEeccc
Confidence 000000 000 111 122355568999999999999887776653332223 58999999999998
No 107
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.51 E-value=5.8e-07 Score=91.29 Aligned_cols=94 Identities=18% Similarity=0.280 Sum_probs=70.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCCHHHH---------HHHHHHHHhC
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDDRLR---------HYATTQLSKS 297 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~~~~~---------~~~~~~l~~~ 297 (499)
++|+|||||+.|+.+|..|++.+ .+.+|+++++....| .++..+. ..-.+.+.+.
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~------------~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQG------------FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQEN 71 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhC------------CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHC
Confidence 48999999999999999998764 226899998763222 2222111 0012446778
Q ss_pred CCEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ .|..++.+ .|++++|+++.+|.+|+|||.+|.
T Consensus 72 ~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 9999998 78888764 678888999999999999999986
No 108
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.47 E-value=1.1e-05 Score=76.36 Aligned_cols=158 Identities=17% Similarity=0.208 Sum_probs=101.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC----------C-------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------S------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~----------~------------------- 281 (499)
.|+|||||++|+-+|..+++.+ .+|.++++.. +-. .
T Consensus 27 DVvIVGgGpAGl~AA~~la~~G--------------~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 27 DVAIVGAGPSGLTAAYYLAKAG--------------LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYK 92 (257)
T ss_pred CEEEECccHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCce
Confidence 7999999999999999998866 7888888652 110 0
Q ss_pred ---------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEEC-----------CCcEEeeeEEEEcCCCC
Q 010844 282 ---------FDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (499)
.+..+...+.+...+.|++++.+ +|.++. ++ ++... +..++.++.||.|+|..
T Consensus 93 ~~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 93 EVEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred eecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 01234455566667889999988 777763 23 22221 22479999999999987
Q ss_pred cc---hhcccCC---CCC--------CCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 010844 335 PS---TLVKSLD---LPK--------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400 (499)
Q Consensus 335 p~---~~~~~~~---l~~--------~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~ 400 (499)
.. .+.+... ... +......|+.+-++ +|++|++|=.+.... |.+...++...=.-.|+.+|+
T Consensus 173 a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~--~~~rmg~~fg~m~~sg~~~a~ 248 (257)
T PRK04176 173 AEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVH--GLPRMGPIFGGMLLSGKKVAE 248 (257)
T ss_pred cHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhc--CCCccCchhHhHHHhHHHHHH
Confidence 65 1222211 111 11122334444343 899999998776433 444445555545568999999
Q ss_pred HHHHHHH
Q 010844 401 LLNRIGK 407 (499)
Q Consensus 401 ~i~~~~~ 407 (499)
.|...++
T Consensus 249 ~~~~~~~ 255 (257)
T PRK04176 249 LILEKLK 255 (257)
T ss_pred HHHHHhh
Confidence 8887764
No 109
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.45 E-value=1e-07 Score=101.36 Aligned_cols=39 Identities=23% Similarity=0.117 Sum_probs=35.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
...+|||||+|.||++||..+++.|.+|+|+|+......
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG 46 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence 357999999999999999999999999999999876543
No 110
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.45 E-value=1.5e-06 Score=89.32 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++||+||||||||+++|..|++.|++|+|+|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 45899999999999999999999999999999874
No 111
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.43 E-value=6.7e-07 Score=90.79 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=36.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 101 (499)
++||+||||||||++||+.|++.|++|+|+|+.+...+.+
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~ 42 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP 42 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc
Confidence 5899999999999999999999999999999987766543
No 112
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.43 E-value=7.7e-07 Score=92.75 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++||+|||||+||++||..+++.|++|+|||++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 35899999999999999999999999999999874
No 113
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.42 E-value=1.1e-06 Score=89.84 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=33.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.++|+|||||+||+++|..|++.|++|+|||+.+..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 579999999999999999999999999999988643
No 114
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.41 E-value=3.3e-06 Score=85.76 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccCCC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDL 344 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l 344 (499)
+..+.+.+.+.+++.|++++.+ +|.+++. + .|.+.+| ++.+|.||+|+|.....+.+.+++
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~ 213 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCC
Confidence 4678888888899999999998 7888753 2 3455555 799999999999988766665554
No 115
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.41 E-value=2.9e-05 Score=77.99 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhC-CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcchhc
Q 010844 283 DDRLRHYATTQLSKS-GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPSTLV 339 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~-gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 339 (499)
+..+...+.+.+.+. |++++.+ +|.+++.+.|.+.+| ++.+|.||+|+|...+.++
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~~v~t~~g-~i~a~~VV~A~G~~s~~l~ 201 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVETGTVRTSRG-DVHADQVFVCPGADFETLF 201 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEecCeEEeCCC-cEEeCEEEECCCCChhhhC
Confidence 346666777777765 9999988 899998777887776 4789999999998876544
No 116
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.41 E-value=1.6e-06 Score=87.80 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
++|+||||||||+++|+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 48999999999999999999999999999987
No 117
>PLN02697 lycopene epsilon cyclase
Probab=98.40 E-value=1.5e-06 Score=90.46 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
..+||+|||||+||+++|..|++.|++|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 4589999999999999999999999999999985
No 118
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.40 E-value=1.4e-05 Score=79.73 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||+|.|||++|..|.+. ++|+|+.|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999998754
No 119
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.39 E-value=1.2e-06 Score=88.81 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.4
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
||+|||||+||+++|..|++.|++|+|||+++..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 6999999999999999999999999999988644
No 120
>PRK06847 hypothetical protein; Provisional
Probab=98.39 E-value=1.4e-06 Score=87.95 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||+||+++|..|++.|++|+|+|+++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 57899999999999999999999999999998864
No 121
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.39 E-value=1.2e-06 Score=89.75 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+++|+|||||+||++||..|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 3589999999999999999999999999999998653
No 122
>PRK10015 oxidoreductase; Provisional
Probab=98.38 E-value=1.3e-06 Score=89.39 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+++|+|||||+||++||+.|++.|++|+|||+.+..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3589999999999999999999999999999988654
No 123
>PRK07236 hypothetical protein; Provisional
Probab=98.36 E-value=1.5e-06 Score=88.14 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+..++|+|||||++||++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4468999999999999999999999999999999864
No 124
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.36 E-value=1.7e-06 Score=82.01 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=33.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
...||+|||||+||++||++|++.|++|+|||+++..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999998764
No 125
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.35 E-value=2.6e-06 Score=85.74 Aligned_cols=110 Identities=15% Similarity=0.122 Sum_probs=67.2
Q ss_pred cEEEECCchHHHHHHHhc--cCCCCeEEEEcCCCCcccccc------------hhhhhccCCCCC------------c--
Q 010844 64 RVVVLGSGWAGCRLMKGI--DTSLYDVVCVSPRNHMVFTPL------------LASTCVGTLEFR------------S-- 115 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L--~~~g~~V~lie~~~~~~~~~~------------~~~~~~g~~~~~------------~-- 115 (499)
||+|||||+||+++|.+| ++.|.+|+|||+++...+... +........+.. .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 699999999999999999 778999999998765422110 001111100000 0
Q ss_pred c-ccc---hh-hhccccccCCCeEEEEEEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010844 116 V-AEP---IA-RIQPAISREPGSYFFLSHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 116 ~-~~~---~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
. ... +. .+...+. ..++.++.++|++|+.....+.+...+ | .++.+++||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~-g--------~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLAD-G--------RTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECC-C--------CEEEeeEEEECCCcccc
Confidence 0 000 11 1112222 356778889999998887744333211 2 48999999999996544
No 126
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.35 E-value=3.9e-07 Score=96.41 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=61.5
Q ss_pred cEEEeCcChHHHHHHHH-------HHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEe
Q 010844 232 HCVVVGGGPTGVEFSGE-------LSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVR 303 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~-------l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~ 303 (499)
.++++|++..++|++.. +.+++ .+|+++... ..+..++..+...+.+.+++.||++++
T Consensus 162 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~ 227 (557)
T PRK07843 162 NMVVMQQDYVWLNLLKRHPRGVLRALKVG--------------ARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLL 227 (557)
T ss_pred cccccHHHHHHHHhhhcCchhHHHHHHHH--------------HHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEe
Confidence 78999999999998754 34444 445554433 334456677888888999999999999
Q ss_pred C-ceEEEeCC-----eEEEC-CCc--EEeee-EEEEcCC-CCcc
Q 010844 304 G-IVKDVDSQ-----KLILN-DGT--EVPYG-LLVWSTG-VGPS 336 (499)
Q Consensus 304 ~-~v~~v~~~-----~v~~~-~g~--~i~~D-~vi~a~G-~~p~ 336 (499)
+ ++.++..+ +|+.. +++ ++.++ .||+|+| +.+|
T Consensus 228 ~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n 271 (557)
T PRK07843 228 NTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHN 271 (557)
T ss_pred CCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcC
Confidence 9 78777532 34443 443 47785 5888654 5544
No 127
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.35 E-value=1.8e-06 Score=87.53 Aligned_cols=36 Identities=33% Similarity=0.428 Sum_probs=33.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+.+|+|||||+||+++|..|++.|++|+|+|+.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence 468999999999999999999999999999988653
No 128
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.34 E-value=5.5e-06 Score=83.71 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC--e--EEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ--K--LILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~--~--v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
+..+.+.+.+.+++.|++++.+ +|.+++.+ . |.++++ ++.+|.||+|+|.....+...++
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g 208 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLG 208 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcc
Confidence 3466777778888899999998 78888653 2 444454 79999999999987666555544
No 129
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.34 E-value=1e-06 Score=80.57 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..|+|||+|+||++||..|+..|.+|||+||..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~ 34 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGR 34 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCC
Confidence 569999999999999999999999999999873
No 130
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.34 E-value=1.9e-06 Score=86.63 Aligned_cols=94 Identities=22% Similarity=0.321 Sum_probs=70.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CCCC---------HHHHHHHHHHHHhCCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSFD---------DRLRHYATTQLSKSGV 299 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~~~---------~~~~~~~~~~l~~~gV 299 (499)
+|+|||||+.|+.+|..+.+.. .++.+|+++++.+.. +.++ .++.....+.+++.||
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~-----------~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv 69 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP-----------LPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGA 69 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC-----------CCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence 4899999999999988875321 134899999986322 2111 2233344566778899
Q ss_pred EEEeCceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.++|.+++. +.|.+++|+++.+|.+|+|||..|.
T Consensus 70 ~~~~~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred EEEEEEEEEEecccCEEEECCCCcccccEEEEccCCCCC
Confidence 999888988875 4788899989999999999999986
No 131
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.32 E-value=4.1e-06 Score=73.13 Aligned_cols=31 Identities=13% Similarity=0.370 Sum_probs=26.6
Q ss_pred EEECCchHHHHHHHhccCC-----CCeEEEEcCCCC
Q 010844 66 VVLGSGWAGCRLMKGIDTS-----LYDVVCVSPRNH 96 (499)
Q Consensus 66 vIIGgG~aGl~aA~~L~~~-----g~~V~lie~~~~ 96 (499)
+|||||++|++++.+|.+. ..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999765 568999999643
No 132
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.32 E-value=2.2e-06 Score=86.97 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 3457999999999999999999999999999999753
No 133
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.32 E-value=2.6e-06 Score=87.80 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..+++++. .+|
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~----------~~-~~~~~~~~~~---l~-~~GI~i~~~~~V 221 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR----------EE-PSVAALAKQY---ME-EDGITFLLNAHT 221 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC----------CC-HHHHHHHHHH---HH-HcCCEEEcCCEE
Confidence 468999999999999999999999999999998764211 00 1111111111 22 35677765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+.. ++ .+++||.||+|+|..|+..
T Consensus 222 ~~i~~~~~~v~v~~--~g--------~~i~~D~viva~G~~p~~~ 256 (438)
T PRK07251 222 TEVKNDGDQVLVVT--ED--------ETYRFDALLYATGRKPNTE 256 (438)
T ss_pred EEEEecCCEEEEEE--CC--------eEEEcCEEEEeeCCCCCcc
Confidence 88887666555443 12 3799999999999998754
No 134
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.30 E-value=3.7e-06 Score=85.55 Aligned_cols=104 Identities=15% Similarity=0.246 Sum_probs=71.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EE
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SH 139 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (499)
-+++++|||||+.|+..|..+++.|.+|||||+.+++.-. ...++...+.+. +.+ .++.+.. .+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-----------~D~ei~~~~~~~---l~~-~gv~i~~~~~ 236 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-----------EDPEISKELTKQ---LEK-GGVKILLNTK 236 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-----------CCHHHHHHHHHH---HHh-CCeEEEccce
Confidence 3578999999999999999999999999999999875311 112233333333 334 5566655 47
Q ss_pred EEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 140 CAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 140 v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
++.++..++.+.+.... + +...+.+|++++|+|-+|+..+
T Consensus 237 v~~~~~~~~~v~v~~~~-g------~~~~~~ad~vLvAiGR~Pn~~~ 276 (454)
T COG1249 237 VTAVEKKDDGVLVTLED-G------EGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred EEEEEecCCeEEEEEec-C------CCCEEEeeEEEEccCCccCCCC
Confidence 77776655534433211 1 1127889999999999988764
No 135
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.29 E-value=3.8e-06 Score=79.37 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
...||+|||||+|||++|+.|++.|++|+|||+++.+.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 35799999999999999999999999999999997653
No 136
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.28 E-value=3.5e-06 Score=87.05 Aligned_cols=93 Identities=23% Similarity=0.444 Sum_probs=68.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc-------CCCC-----C--HHHHHHHHHHHHhC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI-------LSSF-----D--DRLRHYATTQLSKS 297 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~-------l~~~-----~--~~~~~~~~~~l~~~ 297 (499)
+|+|||||+.|+.+|..|++.+ ++.+|+++++.+. ++.+ + .++.....+.+++.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~------------~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLN------------KELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKS 69 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHC------------CCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHC
Confidence 7999999999999999998753 2268999998742 1111 1 12233345667888
Q ss_pred CCEEEeC-ceEEEeC--CeEEECC---CcEEe--eeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDS--QKLILND---GTEVP--YGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~--~~v~~~~---g~~i~--~D~vi~a~G~~p~ 336 (499)
||+++.+ +|.+++. +.+.+.+ ++++. +|.+|+|||.+|.
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 9999887 8998875 4676654 56666 9999999999986
No 137
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.28 E-value=3.5e-06 Score=85.52 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.||+||||||||++||..|++.|++|+|||++..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 4799999999999999999999999999998753
No 138
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.27 E-value=6.5e-05 Score=71.00 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=99.9
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-----------C-------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS-----------S------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~-----------~------------------- 281 (499)
.|+|||||++|+-+|..+++.+ .+|.++++...+. .
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G--------------~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~ 88 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNG--------------LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYE 88 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCee
Confidence 7999999999999999998876 7888888752110 0
Q ss_pred ---------CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-----eEEEC-----------CCcEEeeeEEEEcCCC
Q 010844 282 ---------FDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-----KLILN-----------DGTEVPYGLLVWSTGV 333 (499)
Q Consensus 282 ---------~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-----~v~~~-----------~g~~i~~D~vi~a~G~ 333 (499)
...++.+.+.+...+.|++++.+ .+.++.. + +|.+. |..++.++.||.|||.
T Consensus 89 ~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~ 168 (254)
T TIGR00292 89 DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGH 168 (254)
T ss_pred eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecC
Confidence 01234455566677889999988 7777642 2 34442 1247899999999997
Q ss_pred Ccc--h-hcccCCCCCCCC---C----------ceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHH
Q 010844 334 GPS--T-LVKSLDLPKSPG---G----------RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKY 397 (499)
Q Consensus 334 ~p~--~-~~~~~~l~~~~~---G----------~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~ 397 (499)
... . +.+..++..... | ...|+.+-+ -+|++|++|=.+.-.+ |.+...++...=.-.|+.
T Consensus 169 ~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~--~~~g~~~~gm~~~~~~--~~~rmgp~fg~m~~sg~~ 244 (254)
T TIGR00292 169 DAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTRE--VVPNLYVAGMAVAAVH--GLPRMGPIFGGMLLSGKH 244 (254)
T ss_pred CchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCc--ccCCEEEechhhhhhc--CCCCcCchHHHHHHhhHH
Confidence 764 2 333333322110 1 012222222 3899999998775322 444445555545567999
Q ss_pred HHHHHHHHH
Q 010844 398 LFSLLNRIG 406 (499)
Q Consensus 398 aa~~i~~~~ 406 (499)
+|+.|...+
T Consensus 245 ~a~~~~~~~ 253 (254)
T TIGR00292 245 VAEQILEKL 253 (254)
T ss_pred HHHHHHHHh
Confidence 998877654
No 139
>PRK06184 hypothetical protein; Provisional
Probab=98.27 E-value=4.2e-06 Score=87.82 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++.+|+|||||++||++|..|++.|++|+|||+.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3578999999999999999999999999999987543
No 140
>PRK06834 hypothetical protein; Provisional
Probab=98.27 E-value=3.7e-06 Score=87.53 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999999999999999999999998764
No 141
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.27 E-value=1.5e-05 Score=81.02 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred eEEEEEeCCCcCCC--CCHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCc
Q 010844 268 IHVTLIEANEILSS--FDDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 268 ~~Vtlv~~~~~l~~--~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+++..+.++++|. ....+.+.+.+.+++.|++++.+ .|.+++.+ .+.+ +++++.+|.||+|+|...
T Consensus 87 v~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 87 LELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred CeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 55665555555543 34678888889999999999998 78887543 2344 566899999999999754
No 142
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.26 E-value=5.9e-06 Score=83.77 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 357899999999999999999999999999999754
No 143
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.26 E-value=3.9e-06 Score=85.97 Aligned_cols=94 Identities=26% Similarity=0.355 Sum_probs=68.9
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---CCC---------CHHHHHHHHHHHHh
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---SSF---------DDRLRHYATTQLSK 296 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---~~~---------~~~~~~~~~~~l~~ 296 (499)
..++|||||||+.|+.+|..|.. ++.+|++|++.+.. |.+ ...+...+.+.++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~--------------~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~ 74 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP--------------KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAK 74 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc--------------CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhcc
Confidence 34589999999999998876632 12789999986321 221 12233334556677
Q ss_pred CCCEEEeCceEEEeCC--eEEE----------CCCcEEeeeEEEEcCCCCcc
Q 010844 297 SGVRLVRGIVKDVDSQ--KLIL----------NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~--~v~~----------~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+++++.++|++|+.+ .|.+ .+|+++++|.+|+|+|..+.
T Consensus 75 ~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~ 126 (424)
T PTZ00318 75 LPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN 126 (424)
T ss_pred CCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC
Confidence 8999998899999754 6776 46678999999999999986
No 144
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=4.8e-06 Score=86.26 Aligned_cols=101 Identities=12% Similarity=0.172 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+|+++.+..... . ..++...+.+. +.+ .+++++.+ ++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~----------~-d~e~~~~l~~~---L~~-~GI~i~~~~~V 234 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG----------E-DEDIAHILREK---LEN-DGVKIFTGAAL 234 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc----------c-cHHHHHHHHHH---HHH-CCCEEEECCEE
Confidence 468999999999999999999999999999998753210 0 01111222222 332 57777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+.+.+... + +..+++||.|++|+|..|+..
T Consensus 235 ~~i~~~~~~v~~~~~--g------~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 235 KGLNSYKKQALFEYE--G------SIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred EEEEEcCCEEEEEEC--C------ceEEEEeCEEEEecCCccCCC
Confidence 888877666655431 1 124799999999999998764
No 145
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.25 E-value=6.8e-07 Score=79.27 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=35.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
..||+||||||+||+||++|++.|++|+|||++.++...
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG 68 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGG 68 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCc
Confidence 358999999999999999999999999999999887654
No 146
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.25 E-value=2.7e-06 Score=84.53 Aligned_cols=95 Identities=27% Similarity=0.463 Sum_probs=74.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cC-CCC---------CHHHHHHHHHHHHhCC
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--IL-SSF---------DDRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l-~~~---------~~~~~~~~~~~l~~~g 298 (499)
++|||||||+.|+.+|..|.... ++.+||+|++.. ++ |.+ ..++...+.+.+++.+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~------------~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~ 71 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL------------PDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSG 71 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC------------CCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccC
Confidence 48999999999999999887531 137899999863 22 211 2345556677787565
Q ss_pred -CEEEeCceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcch
Q 010844 299 -VRLVRGIVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 299 -V~v~~~~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
|+++.++|++|+.+ .|+++++.++++|.+|+++|..++.
T Consensus 72 ~v~~~~~~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 72 NVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred ceEEEEEEEEEEcccCCEEEeCCCccccccEEEEecCCcCCc
Confidence 99999999999764 7999998899999999999999984
No 147
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=5.4e-06 Score=86.28 Aligned_cols=102 Identities=16% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+||++.+.+.- . . ...+...+.+. +. ..+++++.+ +|
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~--~--------~-~~~~~~~l~~~---l~-~~gI~i~~~~~v 244 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP--T--------E-DAELSKEVARL---LK-KLGVRVVTGAKV 244 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC--c--------C-CHHHHHHHHHH---HH-hcCCEEEeCcEE
Confidence 46999999999999999999999999999999875310 0 0 11111222222 22 257777654 78
Q ss_pred EEEEC--CCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDT--DNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~--~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++. +++...+.. .++ +..+++||.||+|+|..|+..
T Consensus 245 ~~i~~~~~~~~~~~~~-~~g------~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 245 LGLTLKKDGGVLIVAE-HNG------EEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred EEEEEecCCCEEEEEE-eCC------ceEEEEeCEEEEeeCCccCCC
Confidence 88874 343322221 112 124799999999999998764
No 148
>PLN02661 Putative thiazole synthesis
Probab=98.24 E-value=1.1e-05 Score=78.65 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=33.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~ 97 (499)
....+|+|||||++|+++|+.|++. |++|+|||++...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 3457999999999999999999975 8999999998654
No 149
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.24 E-value=4.9e-06 Score=86.43 Aligned_cols=102 Identities=14% Similarity=0.225 Sum_probs=70.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+.+.- .+ + .++...+.+. +.. .+++++.+ +|
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--~~--------~-~~~~~~~~~~---l~~-~gi~i~~~~~v 234 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--GE--------D-AEVSKVVAKA---LKK-KGVKILTNTKV 234 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--CC--------C-HHHHHHHHHH---HHH-cCCEEEeCCEE
Confidence 46899999999999999999999999999999875321 00 0 1111112221 222 46777664 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+++.+.+...+ + +..++++|.||+|+|..|+..
T Consensus 235 ~~i~~~~~~v~v~~~~-g------~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 235 TAVEKNDDQVVYENKG-G------ETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EEEEEeCCEEEEEEeC-C------cEEEEEeCEEEEecCCcccCC
Confidence 8888766666554321 1 124799999999999998765
No 150
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.24 E-value=3.7e-06 Score=85.07 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3689999999999999999999999999999875
No 151
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=5.6e-06 Score=85.96 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=70.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..++.++.+ +|
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~~-~~~~~~l~~~---l~-~~gV~i~~~~~V 236 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG----------ED-KEISKLAERA---LK-KRGIKIKTGAKA 236 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc----------CC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 368999999999999999999999999999998764210 00 1111222222 22 256777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+.+.+.+...+++ +..++++|.||+|+|..|+...
T Consensus 237 ~~i~~~~~~v~v~~~~gg------~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 237 KKVEQTDDGVTVTLEDGG------KEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EEEEEeCCEEEEEEEeCC------eeEEEEeCEEEEeeCCccCCCC
Confidence 888876655554432111 1247999999999999987643
No 152
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.22 E-value=1.1e-06 Score=64.75 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=29.1
Q ss_pred EECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 67 IIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
|||||++||++|..|++.|++|+|+|+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence 89999999999999999999999999998754
No 153
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.22 E-value=4.8e-06 Score=84.66 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCC---CCeEEEEcCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTS---LYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~---g~~V~lie~~ 94 (499)
.+.+|+|||||+||+++|..|++. |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 457999999999999999999998 9999999994
No 154
>PLN02487 zeta-carotene desaturase
Probab=98.21 E-value=3.6e-05 Score=80.93 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
.+++|+|||||++||++|..|++.|++|+|+|+.+...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 45699999999999999999999999999999988654
No 155
>PRK09126 hypothetical protein; Provisional
Probab=98.21 E-value=6.8e-06 Score=83.44 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=32.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 47899999999999999999999999999999864
No 156
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.21 E-value=2.5e-06 Score=65.29 Aligned_cols=71 Identities=20% Similarity=0.363 Sum_probs=49.8
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEEEE
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHCAG 142 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 142 (499)
+|+|||||+.|+.+|..|++.|.+|+||++++.+. +.+. .+....+.+. +.+ .+++++. ..+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~--~~~~---------~~~~~~~~~~---l~~-~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL--PGFD---------PDAAKILEEY---LRK-RGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS--TTSS---------HHHHHHHHHH---HHH-TTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh--hhcC---------HHHHHHHHHH---HHH-CCCEEEeCCEEEE
Confidence 68999999999999999999999999999998754 1111 1111222222 333 5787766 58888
Q ss_pred EECCCCE
Q 010844 143 IDTDNHV 149 (499)
Q Consensus 143 id~~~~~ 149 (499)
++.+...
T Consensus 66 i~~~~~~ 72 (80)
T PF00070_consen 66 IEKDGDG 72 (80)
T ss_dssp EEEETTS
T ss_pred EEEeCCE
Confidence 8876654
No 157
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.21 E-value=8.8e-06 Score=84.02 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=70.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------CC----------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FD---------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------~~---------------------- 283 (499)
.|+|||||+.|+.+|..+++++ .+|+|++++.+-.. .|
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--------------AKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGW 69 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCc
Confidence 6999999999999999999988 89999987422110 00
Q ss_pred --------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEE-CCCcEEeeeEEEEcCCCCcc
Q 010844 284 --------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLIL-NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 --------------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~-~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.+.+.+.+++.||+++.+++..++.+.+.+ .+|+++.+|.+|+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~ 143 (446)
T TIGR01424 70 TVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQ 143 (446)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCC
Confidence 023334455677889999998888888776655 46778999999999999986
No 158
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.20 E-value=1.4e-05 Score=82.44 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHH-hCCCEEEeC-ceEEEeC---Ce--EE---ECCCc--EEeeeEEEEcCCCCcchhcccCCCC
Q 010844 284 DRLRHYATTQLS-KSGVRLVRG-IVKDVDS---QK--LI---LNDGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~-~~gV~v~~~-~v~~v~~---~~--v~---~~~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+.+.+.+.+. ..|++++.+ +|.+++. +. +. +.+++ ++.+|.||+|+|.....+++.+|++
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 456667767775 459999998 8888753 22 33 23342 6899999999999998888877764
No 159
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.20 E-value=4.4e-06 Score=84.97 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence 468999999999999999999999999999998653
No 160
>PRK05868 hypothetical protein; Validated
Probab=98.19 E-value=8.6e-06 Score=81.96 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
|++|+|||||++|+++|..|++.|++|+|||+.+..
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 468999999999999999999999999999988643
No 161
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.19 E-value=1.9e-05 Score=81.89 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C-e--EEE---CCC--cEEeeeEEEEcCCCCcchhcccCCCC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q-K--LIL---NDG--TEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~-~--v~~---~~g--~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
+..+...+.+.+++.|++++.+ +|.+++. + . +.+ .+| .++.+|.||+|+|.....+.+.+|++
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCC
Confidence 3577788888888899999999 8988864 2 2 332 223 36899999999999988887777765
No 162
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.19 E-value=1e-05 Score=82.07 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35799999999999999999999999999999875
No 163
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.18 E-value=1.1e-05 Score=84.70 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=75.0
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---CcC------------CCCCHHHHHHHHHH
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EIL------------SSFDDRLRHYATTQ 293 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~l------------~~~~~~~~~~~~~~ 293 (499)
...+|+|||||+.|+.+|..+++.+ .+|++++.. ... ....+++.+.+.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 276 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKG--------------LRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEH 276 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHH
Confidence 3468999999999999999999877 889888641 221 02345777888888
Q ss_pred HHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 294 LSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.||+++.+ +|.+++.+ .+.+++|+++.+|.+|+|+|..|.
T Consensus 277 l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 277 IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred HHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 99999999988 88888643 466678889999999999999875
No 164
>PRK08244 hypothetical protein; Provisional
Probab=98.17 E-value=8.8e-06 Score=85.21 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 6899999999999999999999999999998754
No 165
>PRK11445 putative oxidoreductase; Provisional
Probab=98.16 E-value=1.3e-05 Score=79.97 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||+||+++|..|++. ++|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence 46899999999999999999999 99999998864
No 166
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.16 E-value=9.2e-06 Score=82.88 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 689999999999999999999999999999876
No 167
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.15 E-value=1.2e-05 Score=81.37 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHhccCCC-CeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~ 96 (499)
+|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 6999999999999999999999 99999998854
No 168
>PRK06116 glutathione reductase; Validated
Probab=98.15 E-value=9.6e-06 Score=83.90 Aligned_cols=90 Identities=27% Similarity=0.437 Sum_probs=69.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC------CCCH---------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------SFDD--------------------- 284 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------~~~~--------------------- 284 (499)
.|+|||||+.|+.+|..+++.+ .+|+++++..+-. ..|.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G--------------~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g 71 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYG--------------AKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYG 71 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcC
Confidence 6999999999999999999987 8999999753210 0000
Q ss_pred ----------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 ----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ----------------------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+...+.+++.||+++.+.+..++...|++ +|+++.+|.+|+|||.+|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~ 144 (450)
T PRK06116 72 FDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPS 144 (450)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 01122334466789999999877888888888 7788999999999999986
No 169
>PRK06753 hypothetical protein; Provisional
Probab=98.15 E-value=4.8e-06 Score=83.94 Aligned_cols=35 Identities=11% Similarity=0.235 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++|+|||||+||+++|..|++.|++|+|+|+++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 37999999999999999999999999999988653
No 170
>PRK08013 oxidoreductase; Provisional
Probab=98.15 E-value=1.4e-05 Score=81.25 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.++|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999998764
No 171
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.14 E-value=9.6e-06 Score=82.72 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
.++|+|||||++|+++|..|++.|++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 478999999999999999999999999999986
No 172
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.14 E-value=1.2e-05 Score=81.09 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.-. .. .......+.+. +. ..++.++. .++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~---------~~-~~~~~~~l~~~---l~-~~gV~i~~~~~v 206 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS---------LM-PPEVSSRLQHR---LT-EMGVHLLLKSQL 206 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch---------hC-CHHHHHHHHHH---HH-hCCCEEEECCeE
Confidence 468999999999999999999999999999998763210 00 01111122222 22 25677764 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..++.+...+.+.. .++ .++++|.||+|+|..|+.
T Consensus 207 ~~i~~~~~~~~v~~-~~g--------~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 207 QGLEKTDSGIRATL-DSG--------RSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred EEEEccCCEEEEEE-cCC--------cEEECCEEEECcCCCcch
Confidence 88887665544432 112 479999999999998864
No 173
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=1.3e-05 Score=83.36 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=69.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..+++++. .+|
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~d-~~~~~~~~~~---l~-~~gi~i~~~~~v 247 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA----------AD-EQVAKEAAKA---FT-KQGLDIHLGVKI 247 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc----------CC-HHHHHHHHHH---HH-HcCcEEEeCcEE
Confidence 469999999999999999999999999999998753210 01 1111122221 22 25777765 488
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+...+.+ ++..++++|.|++|+|..|+..
T Consensus 248 ~~i~~~~~~v~v~~~~~~-----g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 248 GEIKTGGKGVSVAYTDAD-----GEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred EEEEEcCCEEEEEEEeCC-----CceeEEEcCEEEEccCCccCCC
Confidence 888876655544321110 1224799999999999998865
No 174
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.14 E-value=9.6e-06 Score=84.23 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=69.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. .+ .++...+.+. +. ..+++++.+ +|
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~----------~d-~~~~~~l~~~---l~-~~gV~i~~~~~V 230 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR----------EE-PEISAAVEEA---LA-EEGIEVVTSAQV 230 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc----------cC-HHHHHHHHHH---HH-HcCCEEEcCcEE
Confidence 368999999999999999999999999999998753210 01 1111222222 22 357777665 68
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+++.+.+....++ ...++++|.+|+|+|..|+...
T Consensus 231 ~~i~~~~~~~~v~~~~~~------~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 231 KAVSVRGGGKIITVEKPG------GQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EEEEEcCCEEEEEEEeCC------CceEEEeCEEEEeECCCcCCCC
Confidence 888765543333221111 1247999999999999987653
No 175
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.14 E-value=6e-05 Score=76.97 Aligned_cols=59 Identities=10% Similarity=0.020 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC---C---eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS---Q---KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
..+...+.+.+++.|++++.+ +|.+++. + .|.+.+| ++.+|.||+|+|.....+.+.++
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g 248 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAG 248 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcC
Confidence 455566677888999999998 8888852 2 2555566 69999998988877654444333
No 176
>PRK06370 mercuric reductase; Validated
Probab=98.14 E-value=1.1e-05 Score=83.67 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. . ..++...+.+. + ...+++++. .+|
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~----------~-~~~~~~~l~~~---l-~~~GV~i~~~~~V 235 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR----------E-DEDVAAAVREI---L-EREGIDVRLNAEC 235 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc----------c-CHHHHHHHHHH---H-HhCCCEEEeCCEE
Confidence 478999999999999999999999999999998764211 0 01111222222 2 235777765 488
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+++.+.+.....+ ...++++|.||+|+|..|+..
T Consensus 236 ~~i~~~~~~~~v~~~~~~------~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 236 IRVERDGDGIAVGLDCNG------GAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EEEEEcCCEEEEEEEeCC------CceEEEeCEEEECcCCCcCCC
Confidence 888866544332211101 124799999999999998764
No 177
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.13 E-value=0.0001 Score=65.78 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=95.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC-------CC--------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS-------FD-------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~-------~~-------------------- 283 (499)
.|+|||+|++|+-+|.+|++.+ .+|.++++. .+-.. |+
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g--------------~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye 97 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAG--------------LKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYE 97 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCC--------------ceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcce
Confidence 7999999999999999999876 899999986 32211 11
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEEC-----------CCcEEeeeEEEEcCCCC
Q 010844 284 -----------DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLILN-----------DGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (499)
..+...+....-+.|++++.+ .|+++- ++ +|.++ |--.++++.||=+||..
T Consensus 98 ~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd 177 (262)
T COG1635 98 EEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD 177 (262)
T ss_pred ecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence 111222222233456777766 555541 22 23332 22368999999999998
Q ss_pred cc--hh-cccC---CCCCCCC-------C-ceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 010844 335 PS--TL-VKSL---DLPKSPG-------G-RIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFS 400 (499)
Q Consensus 335 p~--~~-~~~~---~l~~~~~-------G-~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~ 400 (499)
.. .+ .+.. +..+... + .+.|+.+.++ +||+|++|=.++-.. |.+...++...=.-.|+.+|+
T Consensus 178 a~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV--~pgL~vaGMa~~av~--G~pRMGPiFGgMllSGkkaAe 253 (262)
T COG1635 178 AEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEV--YPGLYVAGMAVNAVH--GLPRMGPIFGGMLLSGKKAAE 253 (262)
T ss_pred hHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccc--cCCeEeehhhHHhhc--CCcccCchhhhhhhchHHHHH
Confidence 76 22 2222 2221110 1 1334444443 899999998765322 433444555555567999998
Q ss_pred HHHHHHH
Q 010844 401 LLNRIGK 407 (499)
Q Consensus 401 ~i~~~~~ 407 (499)
.+...++
T Consensus 254 ~i~e~L~ 260 (262)
T COG1635 254 EILEKLK 260 (262)
T ss_pred HHHHHhh
Confidence 8877664
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.13 E-value=1.9e-05 Score=83.01 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=75.1
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC---Cc--------CC----CCCHHHHHHHHHHH
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN---EI--------LS----SFDDRLRHYATTQL 294 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~---~~--------l~----~~~~~~~~~~~~~l 294 (499)
...|+|||||+.|+.+|.++++.+ .+|++++.. .. ++ ..+.++.+.+.+.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G--------------~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 276 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKG--------------IRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHV 276 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999887 788888642 11 11 13457888889999
Q ss_pred HhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 295 SKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.|++++.+ +|.+++.+ .+.+++|+++.+|.||+|+|..+.
T Consensus 277 ~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 277 KEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred HHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 9999999988 78888653 466678889999999999999875
No 179
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.13 E-value=1.5e-05 Score=80.74 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=31.3
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||||+||+++|..|++.|++|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 599999999999999999999999999999864
No 180
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.12 E-value=1e-05 Score=83.17 Aligned_cols=98 Identities=12% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||++|+.+|..|++.|.+|++|++.+...... .+ ..+...+.+. +. ..+++++. .++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~---------~~-~~~~~~~~~~---l~-~~gV~v~~~~~v 202 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKL---------FD-EEMNQIVEEE---LK-KHEINLRLNEEV 202 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccc---------cC-HHHHHHHHHH---HH-HcCCEEEeCCEE
Confidence 4689999999999999999999999999999887532110 00 1111222222 22 25677764 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
..++.+...+.+.+ + .+++||.||+|+|..|+.
T Consensus 203 ~~i~~~~~~v~~~~---g--------~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 203 DSIEGEERVKVFTS---G--------GVYQADMVILATGIKPNS 235 (427)
T ss_pred EEEecCCCEEEEcC---C--------CEEEeCEEEECCCccCCH
Confidence 88987665433322 2 379999999999998765
No 181
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.12 E-value=1.3e-05 Score=82.51 Aligned_cols=93 Identities=12% Similarity=0.197 Sum_probs=65.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc---CC-CCCHHH-------HHHH----HHHHHh
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI---LS-SFDDRL-------RHYA----TTQLSK 296 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~---l~-~~~~~~-------~~~~----~~~l~~ 296 (499)
+|+|||||+.|+.+|..|++.. ++.+|+++++.+. .+ .++.-+ .+.+ .+..++
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~------------~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 70 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLD------------KESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDR 70 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhC------------CCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHh
Confidence 8999999999999999997642 2379999998732 11 111111 1111 223356
Q ss_pred CCCEEEeC-ceEEEeCC--eEEECCC---c--EEeeeEEEEcCCCCcc
Q 010844 297 SGVRLVRG-IVKDVDSQ--KLILNDG---T--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~~--~v~~~~g---~--~i~~D~vi~a~G~~p~ 336 (499)
.||+++.+ +|.+|+.+ .|.+.++ + ++++|.+|+|||.+|.
T Consensus 71 ~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~ 118 (438)
T PRK13512 71 KQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASAN 118 (438)
T ss_pred CCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCC
Confidence 79999987 89999864 5666543 2 4789999999999986
No 182
>PRK07846 mycothione reductase; Reviewed
Probab=98.12 E-value=1.4e-05 Score=82.48 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=68.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.++ .. .++.++. .++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~--~--------~d-~~~~~~l~~l----~~-~~v~i~~~~~v 229 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR--H--------LD-DDISERFTEL----AS-KRWDVRLGRNV 229 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc--c--------cC-HHHHHHHHHH----Hh-cCeEEEeCCEE
Confidence 46899999999999999999999999999999876420 0 11 1111122222 12 3566654 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
+.++.+++.+.+... ++ .++++|.|++|+|..|+...
T Consensus 230 ~~i~~~~~~v~v~~~-~g--------~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 230 VGVSQDGSGVTLRLD-DG--------STVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EEEEEcCCEEEEEEC-CC--------cEeecCEEEEEECCccCccc
Confidence 888766555544331 12 37999999999999988653
No 183
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.11 E-value=7.9e-06 Score=83.30 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~ 96 (499)
+++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 368999999999999999999985 99999999754
No 184
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.11 E-value=1.3e-05 Score=88.13 Aligned_cols=93 Identities=22% Similarity=0.374 Sum_probs=70.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCCH---------HHHHHHHHHHHhCCC
Q 010844 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFDD---------RLRHYATTQLSKSGV 299 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~~---------~~~~~~~~~l~~~gV 299 (499)
|||||+|+.|+.+|..|.... +.+.+||++++.+.++ .++. ++.....+.+++.||
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~-----------~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv 69 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLN-----------RHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGI 69 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcC-----------CCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCC
Confidence 589999999999999987643 1236999999864322 1111 122223456788999
Q ss_pred EEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 300 RLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.+ +|.+++.+ .|++.+|+++++|.+|+|||..|.
T Consensus 70 ~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 70 TLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred EEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 99998 89998764 688888999999999999999886
No 185
>PRK06126 hypothetical protein; Provisional
Probab=98.11 E-value=1.7e-05 Score=84.17 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||||++||++|..|++.|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 357899999999999999999999999999998754
No 186
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.11 E-value=2.3e-05 Score=86.48 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=71.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC----CCC--------HHHHHHHHHHHHhCC
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS----SFD--------DRLRHYATTQLSKSG 298 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~----~~~--------~~~~~~~~~~l~~~g 298 (499)
++|+|||+|+.|+.+|..|.+... .++.+||++++.+.++ .++ +++.....+.+++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~----------~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~g 73 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKAD----------AANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHG 73 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCC----------CCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCC
Confidence 389999999999999999875420 1237999998764322 111 122222345677889
Q ss_pred CEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 299 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ .|.+++.+ .|.+.+|+++.+|.+|+|||..|.
T Consensus 74 I~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC
Confidence 999998 79888764 577788889999999999999886
No 187
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.10 E-value=9.3e-06 Score=82.23 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+.+|+|||||++|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999998
No 188
>PLN02985 squalene monooxygenase
Probab=98.10 E-value=2e-05 Score=82.41 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=33.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 445799999999999999999999999999999874
No 189
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.08 E-value=1.8e-05 Score=83.70 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 457999999999999999999999999999998864
No 190
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.06 E-value=1.6e-05 Score=84.43 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=33.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+.+|+|||||++||++|..|++.|++|+|||+++..
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4579999999999999999999999999999998643
No 191
>PRK07588 hypothetical protein; Provisional
Probab=98.05 E-value=1.6e-05 Score=80.65 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=32.1
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
++|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence 37999999999999999999999999999988643
No 192
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.05 E-value=8.3e-05 Score=73.37 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=55.9
Q ss_pred CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCCcchhcc----cCCCCC
Q 010844 277 EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVGPSTLVK----SLDLPK 346 (499)
Q Consensus 277 ~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~p~~~~~----~~~l~~ 346 (499)
++-...-+++.+.+.+.+++.|++++.+ +|.+++- + .+.+++|.++++|.||+|+|.....|+. +.|+.+
T Consensus 166 HiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv~~ 245 (486)
T COG2509 166 HIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGVKM 245 (486)
T ss_pred ccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCccc
Confidence 3434445688888999999999999998 8987753 2 6788899999999999999999986543 446554
Q ss_pred CC
Q 010844 347 SP 348 (499)
Q Consensus 347 ~~ 348 (499)
..
T Consensus 246 ~~ 247 (486)
T COG2509 246 RA 247 (486)
T ss_pred cc
Confidence 43
No 193
>PRK07190 hypothetical protein; Provisional
Probab=98.04 E-value=2.1e-05 Score=81.84 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 47999999999999999999999999999998864
No 194
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.03 E-value=2.1e-05 Score=81.65 Aligned_cols=100 Identities=16% Similarity=0.249 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- ..+ .++...+.+. +. ..++.++. .++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~----------~~d-~~~~~~l~~~---l~-~~gI~v~~~~~v 239 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS----------FLD-DEISDALSYH---LR-DSGVTIRHNEEV 239 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC----------cCC-HHHHHHHHHH---HH-HcCCEEEECCEE
Confidence 47899999999999999999999999999999875321 011 1111222222 22 25677765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.++..+.+.. .++ .++++|.|++|+|.+|+..
T Consensus 240 ~~i~~~~~~~~v~~-~~g--------~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 240 EKVEGGDDGVIVHL-KSG--------KKIKADCLLYANGRTGNTD 275 (461)
T ss_pred EEEEEeCCeEEEEE-CCC--------CEEEeCEEEEeecCCcccc
Confidence 88876555554432 112 3689999999999998764
No 195
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.01 E-value=2.9e-05 Score=80.68 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+...-. .+ .++...+.+. +.. .+++++. .+|
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~----------~d-~~~~~~l~~~---l~~-~gV~i~~~~~v 236 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN----------ED-AEVSKEIAKQ---YKK-LGVKILTGTKV 236 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc----------cC-HHHHHHHHHH---HHH-CCCEEEECCEE
Confidence 468999999999999999999999999999987653210 00 1111122222 222 5777765 488
Q ss_pred EEEECCCCEEEEeee-cCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETV-TDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~-~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.+.+.+... .++ +..++++|.||+|+|..|+..
T Consensus 237 ~~i~~~~~~~~v~~~~~~g------~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 237 ESIDDNGSKVTVTVSKKDG------KAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred EEEEEeCCeEEEEEEecCC------CeEEEEeCEEEECcCcccCCC
Confidence 888766554433211 112 124799999999999998764
No 196
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.00 E-value=2.8e-05 Score=71.03 Aligned_cols=88 Identities=24% Similarity=0.369 Sum_probs=60.1
Q ss_pred EEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCC-CcC--------------CC----------C-----
Q 010844 234 VVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL--------------SS----------F----- 282 (499)
Q Consensus 234 vVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~-~~l--------------~~----------~----- 282 (499)
+|||||++|+-+|..|.+.+ .+ |+++++. .+. |. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--------------~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--------------IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSF 66 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----------------EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCH
T ss_pred CEECcCHHHHHHHHHHHhCC--------------CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCccccccc
Confidence 69999999999999999876 45 7888765 221 00 0
Q ss_pred --------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCc
Q 010844 283 --------------DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 283 --------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+++.+++.+..++.+++++.+ +|++++.+ .|++++++++.||.||+|+|...
T Consensus 67 ~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~ 138 (203)
T PF13738_consen 67 DDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS 138 (203)
T ss_dssp HHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred ccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence 1245677788888999998888 88888654 47888888899999999999743
No 197
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.00 E-value=3.4e-05 Score=80.05 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+++|||||||.|||+||..+++.|.+|+|||+..
T Consensus 1 ~~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 1 MMKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3799999999999999999999999999999864
No 198
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.00 E-value=3.4e-05 Score=79.73 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.++ + . .++.++. .+|
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~--~--------~d-~~~~~~l~~~---~-~-~gI~i~~~~~V 232 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR--H--------LD-EDISDRFTEI---A-K-KKWDIRLGRNV 232 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc--c--------cC-HHHHHHHHHH---H-h-cCCEEEeCCEE
Confidence 46899999999999999999999999999999875321 0 11 1111222222 1 2 3566654 588
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+++.+.+... ++ .++++|.|++|+|..|+..
T Consensus 233 ~~i~~~~~~v~v~~~-~g--------~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 233 TAVEQDGDGVTLTLD-DG--------STVTADVLLVATGRVPNGD 268 (452)
T ss_pred EEEEEcCCeEEEEEc-CC--------CEEEcCEEEEeeccCcCCC
Confidence 888766555544431 12 3799999999999998764
No 199
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=3.4e-05 Score=80.06 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=68.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|||+.+...- + .+ .++...+.+. +.. .+++++.+ ++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~---------~-~d-~~~~~~l~~~---l~~-~gV~i~~~~~V 238 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP---------G-TD-TETAKTLQKA---LTK-QGMKFKLGSKV 238 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC---------C-CC-HHHHHHHHHH---HHh-cCCEEEECcEE
Confidence 47899999999999999999999999999998775321 0 11 1111222222 222 57777654 78
Q ss_pred EEEECCCCEEEE--eeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHC--ETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~--~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.+..+...+.+ ....++ +..++++|.|++|+|..|+..
T Consensus 239 ~~i~~~~~~v~v~~~~~~~g------~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 239 TGATAGADGVSLTLEPAAGG------AAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EEEEEcCCeEEEEEEEcCCC------ceeEEEeCEEEEccCCccccc
Confidence 888765444433 221111 134799999999999998754
No 200
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.00 E-value=2.7e-05 Score=85.89 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=67.4
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CCC--CCHHHHHHHHHHHHhC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LSS--FDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~~--~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||||+.|+.+|..|++.+ .+|+++++.+ + .|. ++.+....-.+.+++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--------------~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~ 602 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--------------HPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAH 602 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHc
Confidence 45679999999999999999999877 8999999753 2 122 2445555666778889
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ .+ . +.+++.....+|.||+|||..+.
T Consensus 603 GVe~~~gt~V-d-----i~le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 603 GVKFEFGCSP-D-----LTVEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred CCEEEeCcee-E-----EEhhhheeccCCEEEECcCCCCC
Confidence 9999998 45 2 23334445669999999999864
No 201
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.99 E-value=3.5e-06 Score=75.30 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..||+||||||+||+||++|++.|++|+|||++.....
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 47999999999999999999999999999999876543
No 202
>PRK14694 putative mercuric reductase; Provisional
Probab=97.99 E-value=3.2e-05 Score=80.42 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++...+. . .+ .++...+.+. +. ..+++++.+ ++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~------~-----~~-~~~~~~l~~~---l~-~~GI~v~~~~~v 241 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLS------Q-----ED-PAVGEAIEAA---FR-REGIEVLKQTQA 241 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCC------C-----CC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 4689999999999999999999999999998743211 0 01 1112222222 22 357887764 88
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++..+.+.. . + .++++|.||+|+|..|+..
T Consensus 242 ~~i~~~~~~~~v~~-~-~--------~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 242 SEVDYNGREFILET-N-A--------GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred EEEEEcCCEEEEEE-C-C--------CEEEeCEEEEccCCCCCcC
Confidence 88887666555443 1 1 2699999999999998764
No 203
>PRK06847 hypothetical protein; Provisional
Probab=97.98 E-value=6.1e-05 Score=75.93 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.+.+.+.+++.|++++.+ +|.+++.+ .+.+++|+++.+|.||.|.|..+.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~ 164 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK 164 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence 356667777778889999998 88888643 466788999999999999999875
No 204
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.97 E-value=2.5e-05 Score=79.53 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+|||||+|||++|..|++.|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 6899999999999999999999999999998864
No 205
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.97 E-value=3.6e-05 Score=80.34 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.8
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|+|||||+||+.+|..+++.|.+|+|||++.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 479999999999999999999999999999874
No 206
>PLN02507 glutathione reductase
Probab=97.97 E-value=3.2e-05 Score=80.75 Aligned_cols=100 Identities=15% Similarity=0.116 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+...- ..+ .++...+.+. +. ..+++++.+ +|
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~----------~~d-~~~~~~l~~~---l~-~~GI~i~~~~~V 267 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR----------GFD-DEMRAVVARN---LE-GRGINLHPRTNL 267 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc----------ccC-HHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 46899999999999999999999999999998764210 001 1111222222 22 256777664 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+.+.+.+... ++ .++++|.+++|+|..|+..
T Consensus 268 ~~i~~~~~~~~v~~~-~g--------~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 268 TQLTKTEGGIKVITD-HG--------EEFVADVVLFATGRAPNTK 303 (499)
T ss_pred EEEEEeCCeEEEEEC-CC--------cEEEcCEEEEeecCCCCCC
Confidence 888755444544431 12 3799999999999998764
No 207
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.97 E-value=2.8e-05 Score=78.03 Aligned_cols=32 Identities=13% Similarity=0.354 Sum_probs=30.0
Q ss_pred cEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
+|+|||||+||+++|..|++. |++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 699999999999999999986 99999999986
No 208
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.96 E-value=1e-05 Score=81.35 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||||.+|+.+|..|++.|++|+|||+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999998765
No 209
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=3.8e-05 Score=79.80 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=66.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+...-. .+ .++...+.+. +.. . +.++. .++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~----------~d-~~~~~~~~~~---l~~-~-v~i~~~~~v 237 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA----------AD-KDIVKVFTKR---IKK-Q-FNIMLETKV 237 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc----------CC-HHHHHHHHHH---Hhh-c-eEEEcCCEE
Confidence 468999999999999999999999999999998753210 01 1111112221 222 2 55444 477
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.....+.+...+.+ ++..++++|.+|+|+|..|+..
T Consensus 238 ~~i~~~~~~~~v~~~~~~-----~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 238 TAVEAKEDGIYVTMEGKK-----APAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred EEEEEcCCEEEEEEEeCC-----CcceEEEeCEEEEeecccccCC
Confidence 777655444443321110 1124699999999999998864
No 210
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.95 E-value=2e-05 Score=87.80 Aligned_cols=89 Identities=24% Similarity=0.246 Sum_probs=69.8
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-------C--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-------~--~~~~~~~~~~~~~l~~~g 298 (499)
+.++|+|||+|+.|+.+|..|++.+ .+||++++.+ +. | .++.++.+...+.+++.|
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G--------------~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~G 370 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEG--------------FPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLG 370 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhc
Confidence 4689999999999999999999887 8999999753 21 2 235677777778899999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCC
Q 010844 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
|+++++... +..+.+++.....+|.||+|||..
T Consensus 371 v~f~~n~~v---G~dit~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 371 GRFVKNFVV---GKTATLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred CeEEEeEEe---ccEEeHHHhccccCCEEEEeCCCC
Confidence 999988322 233566665566799999999995
No 211
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.95 E-value=6.7e-05 Score=74.36 Aligned_cols=88 Identities=27% Similarity=0.427 Sum_probs=64.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C-cC-----CCC----------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E-IL-----SSF---------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~-~l-----~~~---------------------- 282 (499)
.|+|||||..|+|.|..+++.+ .+|.|+... + +. |.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--------------~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~ 66 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--------------AKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRA 66 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----------------EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHH
Confidence 3899999999999999999988 788888432 2 21 111
Q ss_pred ---------------------------CHHHHHHHHHHHHh-CCCEEEeCceEEEeCC-----eEEECCCcEEeeeEEEE
Q 010844 283 ---------------------------DDRLRHYATTQLSK-SGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 283 ---------------------------~~~~~~~~~~~l~~-~gV~v~~~~v~~v~~~-----~v~~~~g~~i~~D~vi~ 329 (499)
...+.+.+.+.+++ .+++++.++|+++..+ +|.+.+|+++.+|.||+
T Consensus 67 aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 67 ADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE
T ss_pred HhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEE
Confidence 01355566677776 6899988888888542 78899999999999999
Q ss_pred cCCC
Q 010844 330 STGV 333 (499)
Q Consensus 330 a~G~ 333 (499)
|||.
T Consensus 147 aTGt 150 (392)
T PF01134_consen 147 ATGT 150 (392)
T ss_dssp -TTT
T ss_pred eccc
Confidence 9999
No 212
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.95 E-value=5.1e-06 Score=85.10 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=29.2
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
||||||||+||++||..+++.|.+|+|||+.+.+..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG 36 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG 36 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC
Confidence 699999999999999999999999999999976543
No 213
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=7.5e-06 Score=84.46 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=36.9
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
..+++|+|||||.|||+||++|...|++|+|+|.++..+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 45689999999999999999999999999999999876543
No 214
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.94 E-value=2.1e-05 Score=81.47 Aligned_cols=90 Identities=21% Similarity=0.300 Sum_probs=67.2
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-------CC--CCHHHHHHHHHHHHhC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------SS--FDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-------~~--~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||||+.|+++|..|+..+ .+|+++++.+ +. |. .+.++.....+.+++.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g--------------~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~ 203 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKG--------------YDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKL 203 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHc
Confidence 34569999999999999999998876 8999999863 31 22 3567777788889999
Q ss_pred CCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010844 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 298 gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
||+++.+... ...+.+++. .+.+|.||+|||...
T Consensus 204 gv~~~~~~~v---~~~v~~~~~-~~~~d~vvlAtGa~~ 237 (457)
T PRK11749 204 GVEIRTNTEV---GRDITLDEL-RAGYDAVFIGTGAGL 237 (457)
T ss_pred CCEEEeCCEE---CCccCHHHH-HhhCCEEEEccCCCC
Confidence 9999988322 122333333 378999999999863
No 215
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.94 E-value=3.9e-05 Score=79.17 Aligned_cols=99 Identities=21% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.-. . ...+...+.+. +. ..+++++. .++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~--~---------~~~~~~~l~~~---l~-~~gV~v~~~~~v 222 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR--E---------DRDIADNIATI---LR-DQGVDIILNAHV 222 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC--c---------CHHHHHHHHHH---HH-hCCCEEEeCCEE
Confidence 468999999999999999999999999999997653210 0 01111222222 22 35777765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++..+.+... + .++.+|.|++|+|..|+..
T Consensus 223 ~~i~~~~~~v~v~~~--~--------g~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 223 ERISHHENQVQVHSE--H--------AQLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEcCCEEEEEEc--C--------CeEEeCEEEEeecCCcCCC
Confidence 888766655555431 1 2588999999999998764
No 216
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.93 E-value=4.2e-05 Score=79.41 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|++|++.+...-. .+ ..+...+.+. +. ..+++++.+ ++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~----------~d-~~~~~~l~~~---L~-~~gV~i~~~~~v 241 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG----------ED-ADAAEVLEEV---FA-RRGMTVLKRSRA 241 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC----------CC-HHHHHHHHHH---HH-HCCcEEEcCCEE
Confidence 368999999999999999999999999999987653211 00 1111122222 22 257777654 78
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+...+.+... ++ .++++|.|++|+|..|+..
T Consensus 242 ~~v~~~~~~~~v~~~-~g--------~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 242 ESVERTGDGVVVTLT-DG--------RTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred EEEEEeCCEEEEEEC-CC--------cEEEecEEEEeecCCcCCC
Confidence 888655454544321 12 3799999999999998865
No 217
>PRK10262 thioredoxin reductase; Provisional
Probab=97.93 E-value=8.5e-05 Score=73.24 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||+|+.|+.+|..|++.+.+|+++++.+.+...+. ....+.+ .+. ..++.++. ..+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~-------------~~~~~~~---~l~-~~gV~i~~~~~v 208 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKI-------------LIKRLMD---KVE-NGNIILHTNRTL 208 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHH-------------HHHHHHh---hcc-CCCeEEEeCCEE
Confidence 47999999999999999999999999999999875321110 1111111 122 35677765 578
Q ss_pred EEEECCCC---EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNH---VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~---~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+.. .+++.+..++ ++..++++|.||+|+|..|+..
T Consensus 209 ~~v~~~~~~~~~v~~~~~~~~-----~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNS-----DNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEEEcCCccEEEEEEEEcCCC-----CeEEEEECCEEEEEeCCccChh
Confidence 88876543 3444432111 1234799999999999988754
No 218
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.92 E-value=6e-05 Score=77.85 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=66.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC------CCH---------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS------FDD--------------------- 284 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~------~~~--------------------- 284 (499)
.|+|||+|+.|+..|..+++.+ .+|+++++..+-.. .|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~ 69 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHG--------------AKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGF 69 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCC--------------CcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCc
Confidence 7999999999999999999987 89999997432110 000
Q ss_pred ----------------------HHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 ----------------------RLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ----------------------~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+...+++.||+++.+...-.+++.|.+ +++++.+|.||+|||.+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~ 142 (450)
T TIGR01421 70 YQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPS 142 (450)
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCC
Confidence 11223445577789999998544445556666 5678999999999999986
No 219
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.90 E-value=3.3e-05 Score=78.79 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=69.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEE-EEEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFF-LSHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v 140 (499)
.++++|||+|+.|+.+|..|++.|++|+++|+.+....+... ......+.+. + ...+++++ ...+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------~~~~~~~~~~---l-~~~gi~~~~~~~~ 201 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------PEVAEELAEL---L-EKYGVELLLGTKV 201 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhh----------HHHHHHHHHH---H-HHCCcEEEeCCce
Confidence 479999999999999999999999999999999875433211 1112223332 2 23457764 4588
Q ss_pred EEEECCCCEEEEe--eecCccccCCCceeeeeCCeEEEcCCCCcc
Q 010844 141 AGIDTDNHVVHCE--TVTDELRTLEPWKFKISYDKLVIALGAEAS 183 (499)
Q Consensus 141 ~~id~~~~~v~~~--~~~~~~~~~~~~~~~i~yd~LViAtG~~~~ 183 (499)
..|+...+..... .... ...+++|.+++++|.+|+
T Consensus 202 ~~i~~~~~~~~~~~~~~~~--------~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 202 VGVEGKGNTLVVERVVGID--------GEEIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEcccCcceeeEEEEeC--------CcEEEeeEEEEeeccccc
Confidence 8998876643321 1111 247999999999999985
No 220
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.89 E-value=3.5e-05 Score=78.86 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~ 97 (499)
.+|+|||||+|||++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence 37999999999999999999988 599999998654
No 221
>PTZ00058 glutathione reductase; Provisional
Probab=97.88 E-value=6e-05 Score=79.39 Aligned_cols=101 Identities=10% Similarity=0.173 Sum_probs=66.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+.+. +. .+ .++...+.+. +. ..+++++.+ ++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il--~~--------~d-~~i~~~l~~~---L~-~~GV~i~~~~~V 301 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL--RK--------FD-ETIINELEND---MK-KNNINIITHANV 301 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc--cc--------CC-HHHHHHHHHH---HH-HCCCEEEeCCEE
Confidence 5789999999999999999999999999999877532 10 01 1111222222 22 256776654 67
Q ss_pred EEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++. .+.+...+ + ..++++|.|++|+|..|+..
T Consensus 302 ~~I~~~~~~~v~v~~~~-~-------~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 302 EEIEKVKEKNLTIYLSD-G-------RKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred EEEEecCCCcEEEEECC-C-------CEEEECCEEEECcCCCCCcc
Confidence 77875432 23332111 1 24799999999999988754
No 222
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.87 E-value=7.1e-05 Score=77.73 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=66.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- . .+ .++...+.+. +.+ . ++++. .++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--~--------~d-~~~~~~~~~~---l~~-~-I~i~~~~~v 232 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP--L--------ED-PEVSKQAQKI---LSK-E-FKIKLGAKV 232 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc--c--------hh-HHHHHHHHHH---Hhh-c-cEEEcCCEE
Confidence 47899999999999999999999999999999875321 0 00 1111122221 332 3 66554 578
Q ss_pred EEEECCCC-EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNH-VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~-~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+.+ .+++...+ + ++.++++|.+++|+|..|+..
T Consensus 233 ~~i~~~~~~~v~~~~~~-~------~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 233 TSVEKSGDEKVEELEKG-G------KTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred EEEEEcCCceEEEEEcC-C------ceEEEEeCEEEEccCCccCCC
Confidence 88875543 44442111 1 134799999999999998865
No 223
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.86 E-value=0.0001 Score=78.22 Aligned_cols=90 Identities=21% Similarity=0.328 Sum_probs=69.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC------------CC----CCHHHHHHHHHHHH
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL------------SS----FDDRLRHYATTQLS 295 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l------------~~----~~~~~~~~~~~~l~ 295 (499)
.|+|||||+.|+.+|..+++.+ .+|++++++++. |. .+..+.+.+.+.++
T Consensus 6 DVvIIGgGpAGL~AA~~lar~g--------------~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~ 71 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRAK--------------LDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQ 71 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHH
Confidence 7999999999999999998866 789999875321 11 12456677777888
Q ss_pred hCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 296 KSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.|++++.+.|..++.+ .+.+.++ ++.+|.+|+|||.+|.
T Consensus 72 ~~gv~~~~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 72 DFGVKFLQAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HcCCEEeccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 88999976678777643 3444444 6899999999999886
No 224
>PLN02463 lycopene beta cyclase
Probab=97.86 E-value=9.1e-05 Score=75.94 Aligned_cols=91 Identities=25% Similarity=0.419 Sum_probs=66.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC--cCCC----------------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE--ILSS---------------------------- 281 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~--~l~~---------------------------- 281 (499)
.|+|||||++|.-+|..|++.+ .+|.++++.+ ..|.
T Consensus 30 DVvIVGaGpAGLalA~~La~~G--------------l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~ 95 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAG--------------LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVY 95 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCC--------------CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEE
Confidence 7999999999999999998755 6666666532 1110
Q ss_pred ----------------CCHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 282 ----------------FDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 282 ----------------~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...++.+.+.+.+.+.||+++..+|.+++.+ .|++++|+++.+|.||.|+|..+.
T Consensus 96 ~~~~~~~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 96 IDDGKKKDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred EeCCCCccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0123445566666778999986678777642 477888989999999999998764
No 225
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.83 E-value=0.00025 Score=67.24 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=59.5
Q ss_pred HHHHHhcC-CCC-CceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe----CC---eEEECCCcEEe
Q 010844 255 RDVRQRYS-HVK-DYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVD----SQ---KLILNDGTEVP 323 (499)
Q Consensus 255 ~~~~~~~~-~~~-~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~----~~---~v~~~~g~~i~ 323 (499)
++++++|| +.+ ++..+-+++.. .+ ....+....++..+++.|+.++.+ ++..+. ++ .|.+++|..+.
T Consensus 123 eEvrk~fP~~~~l~d~~~G~~n~~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~ 200 (399)
T KOG2820|consen 123 EEVRKRFPSNIPLPDGWQGVVNESGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYH 200 (399)
T ss_pred HHHHHhCCCCccCCcchhhcccccccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeee
Confidence 45677888 322 22333344332 21 124567788889999999999988 666654 22 67888999999
Q ss_pred eeEEEEcCCCCcchhccc
Q 010844 324 YGLLVWSTGVGPSTLVKS 341 (499)
Q Consensus 324 ~D~vi~a~G~~p~~~~~~ 341 (499)
++.+|+++|.+-+.++..
T Consensus 201 akkiI~t~GaWi~klL~~ 218 (399)
T KOG2820|consen 201 AKKIIFTVGAWINKLLPT 218 (399)
T ss_pred cceEEEEecHHHHhhcCc
Confidence 999999999999877663
No 226
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.82 E-value=0.00031 Score=72.48 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=65.0
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-----------------------------
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL----------------------------- 279 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l----------------------------- 279 (499)
.++|+|||||++|+-+|.+|.+.+ .+|++++++ .+-
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G--------------~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~ 75 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG--------------HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYE 75 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC--------------CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhh
Confidence 469999999999999999998765 566666643 110
Q ss_pred ----------------CC-------------C--CHHHHHHHHHHHHhCCCE--EEeC-ceEEEeCC----eEEECCC--
Q 010844 280 ----------------SS-------------F--DDRLRHYATTQLSKSGVR--LVRG-IVKDVDSQ----KLILNDG-- 319 (499)
Q Consensus 280 ----------------~~-------------~--~~~~~~~~~~~l~~~gV~--v~~~-~v~~v~~~----~v~~~~g-- 319 (499)
|. + ..++.+++++..+..|++ +..+ +|.+++.. .|.+.++
T Consensus 76 ~L~tn~p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~ 155 (461)
T PLN02172 76 SLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGG 155 (461)
T ss_pred hhhccCCHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCC
Confidence 00 0 135777788888888988 7777 88888753 3444432
Q ss_pred c--EEeeeEEEEcCCC--Ccc
Q 010844 320 T--EVPYGLLVWSTGV--GPS 336 (499)
Q Consensus 320 ~--~i~~D~vi~a~G~--~p~ 336 (499)
. +..+|.||+|+|. .|+
T Consensus 156 ~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 156 FSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred ceEEEEcCEEEEeccCCCCCc
Confidence 2 4579999999994 454
No 227
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.82 E-value=1.3e-05 Score=79.88 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
++|+|||||+||+++|..|++.|++|+|||+++...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 589999999999999999999999999999987643
No 228
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.5e-05 Score=80.22 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=35.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
+||+|+|||.|||+||++|+++|++|||+|.+++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk 38 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGK 38 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCce
Confidence 58999999999999999999999999999999886654
No 229
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.81 E-value=4.1e-05 Score=79.00 Aligned_cols=90 Identities=22% Similarity=0.290 Sum_probs=67.0
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CC--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+++|..|++.+ .+|+++++.+ + +| .++.++.....+.+++.|
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~g 197 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAG--------------HSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLG 197 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCC
Confidence 4569999999999999999998876 8999999752 2 12 245677777777889999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCC-Ccc
Q 010844 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGV-GPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 336 (499)
|+++.+... ...+.+++. ...+|.||+|||. .|.
T Consensus 198 v~~~~~~~v---~~~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 198 VTFRMNFLV---GKTATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred cEEEeCCcc---CCcCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 999988422 223444333 3469999999997 454
No 230
>PRK14727 putative mercuric reductase; Provisional
Probab=97.80 E-value=9.4e-05 Score=77.08 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.. .... . + ..+...+.+. +. ..++.++. .++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~~--~--------d-~~~~~~l~~~---L~-~~GV~i~~~~~V 251 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLFR--E--------D-PLLGETLTAC---FE-KEGIEVLNNTQA 251 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCCc--c--------h-HHHHHHHHHH---HH-hCCCEEEcCcEE
Confidence 3689999999999999999999999999998743 1110 0 0 1111222222 22 35677765 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
+.++.+...+.+... + .++.+|.+|+|+|..|+..
T Consensus 252 ~~i~~~~~~~~v~~~--~--------g~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 252 SLVEHDDNGFVLTTG--H--------GELRAEKLLISTGRHANTH 286 (479)
T ss_pred EEEEEeCCEEEEEEc--C--------CeEEeCEEEEccCCCCCcc
Confidence 888765555554431 1 2689999999999998764
No 231
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=2e-05 Score=79.23 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc-c---cccchhhhhccCC--------------------CC----
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM-V---FTPLLASTCVGTL--------------------EF---- 113 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~-~---~~~~~~~~~~g~~--------------------~~---- 113 (499)
.++|+|||||.||+.||...++.|+++.|+.-+... . -.|...+...|.+ .+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 489999999999999999999999999998765322 1 1122222222110 00
Q ss_pred -------Cccc-----cchh-hhccccccCCCeEEEEEEEEEEECCCCE-EEEeeecCccccCCCceeeeeCCeEEEcCC
Q 010844 114 -------RSVA-----EPIA-RIQPAISREPGSYFFLSHCAGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALG 179 (499)
Q Consensus 114 -------~~~~-----~~~~-~~~~~~~~~~~~~~~~~~v~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yd~LViAtG 179 (499)
+... ..++ .+...+...++..++++.|+++..++.. |.-.....| ..+.++.||++||
T Consensus 84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G--------~~~~a~aVVlTTG 155 (621)
T COG0445 84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADG--------PEFHAKAVVLTTG 155 (621)
T ss_pred CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCC--------CeeecCEEEEeec
Confidence 0000 0011 1122355667888899999998875442 332222223 5899999999999
Q ss_pred CC
Q 010844 180 AE 181 (499)
Q Consensus 180 ~~ 181 (499)
+-
T Consensus 156 TF 157 (621)
T COG0445 156 TF 157 (621)
T ss_pred cc
Confidence 74
No 232
>PRK13748 putative mercuric reductase; Provisional
Probab=97.79 E-value=8.7e-05 Score=79.10 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=66.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++...+ .. .+ .++...+.+. +. ..++.++. .++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l------~~-----~d-~~~~~~l~~~---l~-~~gI~i~~~~~v 333 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLF------FR-----ED-PAIGEAVTAA---FR-AEGIEVLEHTQA 333 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccc------cc-----cC-HHHHHHHHHH---HH-HCCCEEEcCCEE
Confidence 468999999999999999999999999999985321 00 00 1111222222 22 25677764 478
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.++..+.+... + .++.+|.+++|+|..|+..
T Consensus 334 ~~i~~~~~~~~v~~~--~--------~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 334 SQVAHVDGEFVLTTG--H--------GELRADKLLVATGRAPNTR 368 (561)
T ss_pred EEEEecCCEEEEEec--C--------CeEEeCEEEEccCCCcCCC
Confidence 888765555554431 1 2689999999999998864
No 233
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.78 E-value=1.6e-05 Score=72.44 Aligned_cols=91 Identities=29% Similarity=0.442 Sum_probs=63.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC----CCCCH-----------HHH--H--HHHH
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL----SSFDD-----------RLR--H--YATT 292 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l----~~~~~-----------~~~--~--~~~~ 292 (499)
+|+|||||+.|+.+|..|++.+ .+|++++..... ..++. ... . .+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--------------~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--------------AKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVD 66 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--------------SEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCC--------------CeEEEEeccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999655 899999764211 11110 011 1 3344
Q ss_pred HHHhCCCEEEeC-ceEEEeCC--eE----------EECCCcEEeeeEEEEcCCCCcc
Q 010844 293 QLSKSGVRLVRG-IVKDVDSQ--KL----------ILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~--~v----------~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+...+++++.+ ++.+++.. .+ ...++.++.+|.+|+|+|..|.
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 456789999776 78777643 11 1234568999999999998876
No 234
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.77 E-value=2.2e-05 Score=81.82 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
..+.+.+.+.+++.|++|+++ +|++|..+ ++...+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 468888899999999999999 89998642 455566668999999998876
No 235
>PRK12831 putative oxidoreductase; Provisional
Probab=97.76 E-value=5.3e-05 Score=78.43 Aligned_cols=92 Identities=21% Similarity=0.384 Sum_probs=66.2
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---C----CC--CCH-HHHHHHHHHHHh
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----SS--FDD-RLRHYATTQLSK 296 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---l----~~--~~~-~~~~~~~~~l~~ 296 (499)
...++|+|||+|+.|+.+|..|++.+ .+|+++++.+ + + |. ++. ++.....+.+++
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 203 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMG--------------YDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKK 203 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--------------CeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHH
Confidence 45679999999999999999999877 8999999753 1 1 21 222 366666778889
Q ss_pred CCCEEEeCceEEEeCCeEEECCC-cEEeeeEEEEcCCC-Ccc
Q 010844 297 SGVRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGV-GPS 336 (499)
Q Consensus 297 ~gV~v~~~~v~~v~~~~v~~~~g-~~i~~D~vi~a~G~-~p~ 336 (499)
.||+++.+... ...+.+++. +++.+|.||+|||. .|.
T Consensus 204 ~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 204 LGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred cCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 99999988422 122333332 34679999999998 454
No 236
>PLN02661 Putative thiazole synthesis
Probab=97.76 E-value=0.0017 Score=63.51 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=93.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCC----------------------------CC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSS----------------------------FD 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~----------------------------~~ 283 (499)
.|+|||+|++|+-+|..+++.. +.+|+++++...... ++
T Consensus 94 DVlIVGaG~AGl~AA~~La~~~-------------g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd 160 (357)
T PLN02661 94 DVVIVGAGSAGLSCAYELSKNP-------------NVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYD 160 (357)
T ss_pred CEEEECCHHHHHHHHHHHHHcC-------------CCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcc
Confidence 8999999999999999998531 168888887521100 00
Q ss_pred -----------HHHHHHHHH-HHHhCCCEEEeC-ceEEEeC--C---eEEE------CC--C------cEEeeeEEEEcC
Q 010844 284 -----------DRLRHYATT-QLSKSGVRLVRG-IVKDVDS--Q---KLIL------ND--G------TEVPYGLLVWST 331 (499)
Q Consensus 284 -----------~~~~~~~~~-~l~~~gV~v~~~-~v~~v~~--~---~v~~------~~--g------~~i~~D~vi~a~ 331 (499)
..+...+.+ .+++.||+++.+ .+.++.. + ++.+ .+ + ..+.++.||+||
T Consensus 161 ~~dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlAT 240 (357)
T PLN02661 161 EQENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSC 240 (357)
T ss_pred cCCCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcC
Confidence 011112232 334578999888 6666532 2 3442 11 1 268999999999
Q ss_pred CCCcc---hhcc---cCCCCC----------CCCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHH
Q 010844 332 GVGPS---TLVK---SLDLPK----------SPGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQG 395 (499)
Q Consensus 332 G~~p~---~~~~---~~~l~~----------~~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g 395 (499)
|..+. ...+ ++++.. +..-...|+.+-++ +|++|++|=.+.-.+ |.+...++...=.-.|
T Consensus 241 Gh~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev--~pgl~~~gm~~~~~~--g~~rmgp~fg~m~~sg 316 (357)
T PLN02661 241 GHDGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREV--VPGMIVTGMEVAEID--GSPRMGPTFGAMMISG 316 (357)
T ss_pred CCCCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcc--cCCEEEeccchhhhc--CCCccCchhHhHHhhh
Confidence 97663 1111 122210 00001222333333 899999998765322 4444555555556789
Q ss_pred HHHHHHHHHHHH
Q 010844 396 KYLFSLLNRIGK 407 (499)
Q Consensus 396 ~~aa~~i~~~~~ 407 (499)
+.+|+.|...++
T Consensus 317 ~k~a~~~~~~l~ 328 (357)
T PLN02661 317 QKAAHLALKALG 328 (357)
T ss_pred HHHHHHHHHHHc
Confidence 999999988875
No 237
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.75 E-value=0.00017 Score=77.28 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=67.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++.+.+.- ..+. ++...+.+. +....++.++.. .|
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~----------~~d~-eis~~l~~~---ll~~~GV~I~~~~~V 377 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP----------LLDA-DVAKYFERV---FLKSKPVRVHLNTLI 377 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc----------cCCH-HHHHHHHHH---HhhcCCcEEEcCCEE
Confidence 46899999999999999999999999999999876321 0111 111112221 212356776654 78
Q ss_pred EEEECCCC--EEEEeeecC--ccc-c---CCCceeeeeCCeEEEcCCCCccCCC
Q 010844 141 AGIDTDNH--VVHCETVTD--ELR-T---LEPWKFKISYDKLVIALGAEASTFG 186 (499)
Q Consensus 141 ~~id~~~~--~v~~~~~~~--~~~-~---~~~~~~~i~yd~LViAtG~~~~~~~ 186 (499)
..|+..+. .+.+..... +.. . ...+..++++|.|++|+|..|+...
T Consensus 378 ~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 378 EYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 88875542 244432110 000 0 0001237999999999999988643
No 238
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.75 E-value=5.2e-05 Score=78.11 Aligned_cols=91 Identities=20% Similarity=0.263 Sum_probs=62.2
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC---------CCC--CHHHHHHHHHHHHhC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL---------SSF--DDRLRHYATTQLSKS 297 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l---------~~~--~~~~~~~~~~~l~~~ 297 (499)
..++|+|||+|+.|+.+|..|+... .+.+|+++++.+.. |.. ...+...+.+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~------------~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~ 92 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH------------DGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDD 92 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC------------CCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHC
Confidence 3468999999999999999997621 12899999986422 111 123444556667778
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+|+++.+ .+ +..+.+++-. ..+|.||+|+|..+.
T Consensus 93 ~v~~~~nv~v----g~dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 93 RVSFFGNVTL----GRDVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred CeEEEcCEEE----CccccHHHHh-hhCCEEEEecCCCCC
Confidence 9998887 44 1223443332 369999999999864
No 239
>PRK07236 hypothetical protein; Provisional
Probab=97.74 E-value=0.00014 Score=73.68 Aligned_cols=92 Identities=21% Similarity=0.203 Sum_probs=63.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCCC------CCHHHHHHHH------------
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILSS------FDDRLRHYAT------------ 291 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~~------~~~~~~~~~~------------ 291 (499)
.+|+|||||++|+.+|..|++.+ .+|+++++.+ ..+. +.+...+.+.
T Consensus 7 ~~ViIVGaG~aGl~~A~~L~~~G--------------~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~ 72 (386)
T PRK07236 7 PRAVVIGGSLGGLFAALLLRRAG--------------WDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGV 72 (386)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--------------CCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCccccccc
Confidence 48999999999999999999876 7888888752 2221 1222212111
Q ss_pred -------------------------------HHHHh--CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010844 292 -------------------------------TQLSK--SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 292 -------------------------------~~l~~--~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
+.|.+ .+++++.+ +|++++.+ .+++++|+++.+|+||.|-|.
T Consensus 73 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~ 152 (386)
T PRK07236 73 PSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGG 152 (386)
T ss_pred CccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC
Confidence 11111 13557777 78877543 367789999999999999998
Q ss_pred Ccc
Q 010844 334 GPS 336 (499)
Q Consensus 334 ~p~ 336 (499)
...
T Consensus 153 ~S~ 155 (386)
T PRK07236 153 RST 155 (386)
T ss_pred Cch
Confidence 775
No 240
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.74 E-value=0.00014 Score=76.18 Aligned_cols=99 Identities=14% Similarity=0.239 Sum_probs=63.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
.++|+|||||+.|+.+|..|++.|.+|+||++... .. .+ + .++...+.+. +. ..+++++.+ .+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~--l~-~~--------d-~~~~~~l~~~---l~-~~GV~i~~~~~v 245 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIP--LR-GF--------D-RQCSEKVVEY---MK-EQGTLFLEGVVP 245 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcc--cc-cC--------C-HHHHHHHHHH---HH-HcCCEEEcCCeE
Confidence 35899999999999999999999999999986421 11 11 0 1111222222 22 256777654 55
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..+......+.+.. .++ .++.+|.|++|+|..|+..
T Consensus 246 ~~v~~~~~~~~v~~-~~g--------~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 246 INIEKMDDKIKVLF-SDG--------TTELFDTVLYATGRKPDIK 281 (499)
T ss_pred EEEEEcCCeEEEEE-CCC--------CEEEcCEEEEeeCCCCCcc
Confidence 66654333333322 112 3689999999999998764
No 241
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.73 E-value=0.00018 Score=72.25 Aligned_cols=92 Identities=23% Similarity=0.319 Sum_probs=63.4
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC---------CCCHHHHH--------------
Q 010844 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS---------SFDDRLRH-------------- 288 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~---------~~~~~~~~-------------- 288 (499)
|+|||||+.|+.+|..|++. +++.+|.++++.+ +.+ ..++....
T Consensus 2 viIvGaG~AGl~lA~~L~~~------------~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~ 69 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA------------RPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYE 69 (370)
T ss_pred EEEECccHHHHHHHHHHHhc------------CCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCE
Confidence 89999999999999999864 1227899998763 222 11111100
Q ss_pred --------------------HHHHH-HHhCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 289 --------------------YATTQ-LSKSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 289 --------------------~~~~~-l~~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+. +++.+..++.+ +|.++++++|++++|+++.+|.||.|.|..+.
T Consensus 70 v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 70 VRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred EECcchhhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCCC
Confidence 11112 22223446666 89999888999999999999999999998875
No 242
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.73 E-value=6.6e-05 Score=75.02 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=61.9
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC---------CCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+++|..|++.+ .+|+++++. .+... .+.+......+.+.+.|
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g--------------~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLG--------------YEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAG 82 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCC--------------CcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCC
Confidence 3469999999999999999998766 899999986 33211 22333344455677779
Q ss_pred CEEEeC-ceEEEeC------CeEE--E--CCCcEEeeeEEEEcCCCC
Q 010844 299 VRLVRG-IVKDVDS------QKLI--L--NDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~-~v~~v~~------~~v~--~--~~g~~i~~D~vi~a~G~~ 334 (499)
|+++.+ .+..++. +... . .++..+.+|.||+|||..
T Consensus 83 i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 83 VVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTW 129 (352)
T ss_pred eEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCC
Confidence 999988 5543321 1111 0 111247899999999984
No 243
>PRK07208 hypothetical protein; Provisional
Probab=97.73 E-value=2.8e-05 Score=81.20 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=36.5
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
+++++|+|||||++||+||+.|++.|++|+|+|++++.+..
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGI 42 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 35678999999999999999999999999999999876543
No 244
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.72 E-value=2.5e-05 Score=80.91 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCccc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMVF 99 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~~ 99 (499)
++|+|||||+|||+||+.|++.| ++|+|+|++++.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GG 39 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGG 39 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcc
Confidence 47999999999999999999977 89999999987654
No 245
>PLN02268 probable polyamine oxidase
Probab=97.72 E-value=2.9e-05 Score=80.02 Aligned_cols=38 Identities=24% Similarity=0.474 Sum_probs=34.9
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
++|+|||||.|||+||+.|.+.|++|+|+|++++.+..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 47999999999999999999999999999999987654
No 246
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.72 E-value=0.00014 Score=75.67 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
..+++|||||+.|+.+|..|++.|.+|+|+++. ... +.+ + .++...+.+. +. ..+++++.+ .+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l--~~~--------d-~~~~~~l~~~---L~-~~gV~i~~~~~v 243 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILL--RGF--------D-QDCANKVGEH---ME-EHGVKFKRQFVP 243 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccc--ccc--------C-HHHHHHHHHH---HH-HcCCEEEeCceE
Confidence 358999999999999999999999999999873 211 100 0 1111222222 22 257777654 55
Q ss_pred EEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++..+..+.+...+ +. +..++++|.+++|+|..|+..
T Consensus 244 ~~v~~~~~~~~v~~~~-~~-----~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 244 IKVEQIEAKVKVTFTD-ST-----NGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred EEEEEcCCeEEEEEec-CC-----cceEEEeCEEEEEecCCcCCC
Confidence 6665444333332211 10 013799999999999998764
No 247
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.71 E-value=0.00014 Score=72.16 Aligned_cols=105 Identities=17% Similarity=0.246 Sum_probs=69.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE-EE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS-HC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v 140 (499)
..+||++|||+.|+.+|..|...+.+||+|++++...- .. -...+...+.. +....+++++.+ .+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-----~l-----f~~~i~~~~~~----y~e~kgVk~~~~t~~ 278 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-----RL-----FGPSIGQFYED----YYENKGVKFYLGTVV 278 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-----hh-----hhHHHHHHHHH----HHHhcCeEEEEecce
Confidence 46799999999999999999999999999999875321 10 01112222333 333478888776 45
Q ss_pred EEEECCC-CEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCCCCC
Q 010844 141 AGIDTDN-HVVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTFGIH 188 (499)
Q Consensus 141 ~~id~~~-~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~~ip 188 (499)
.+++... +++.-....++ .++++|-||+.+|+.|+.....
T Consensus 279 s~l~~~~~Gev~~V~l~dg--------~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 279 SSLEGNSDGEVSEVKLKDG--------KTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred eecccCCCCcEEEEEeccC--------CEeccCeEEEeecccccccccc
Confidence 5565443 22222222223 5899999999999999876544
No 248
>PLN02546 glutathione reductase
Probab=97.71 E-value=0.00023 Score=75.08 Aligned_cols=90 Identities=26% Similarity=0.315 Sum_probs=69.3
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC----------CCcC---------C------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEA----------NEIL---------S------------ 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~----------~~~l---------~------------ 280 (499)
.|+|||+|+.|...|..+++++ .+|.++++ +.+- |
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G--------------~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~ 146 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFG--------------ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSH 146 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHH
Confidence 6999999999999999999988 89999994 1100 0
Q ss_pred ------CCC----------------------HHHHHHHHHHHHhCCCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCC
Q 010844 281 ------SFD----------------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTG 332 (499)
Q Consensus 281 ------~~~----------------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G 332 (499)
.++ .++.+.+.+.|++.||+++.+..+.++.+.|.+ +|+++.+|.||+|||
T Consensus 147 ~~~~~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATG 225 (558)
T PLN02546 147 EFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVG 225 (558)
T ss_pred HHHhhhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCC
Confidence 000 012233445577889999999888888888877 677899999999999
Q ss_pred CCcc
Q 010844 333 VGPS 336 (499)
Q Consensus 333 ~~p~ 336 (499)
.+|.
T Consensus 226 s~p~ 229 (558)
T PLN02546 226 GRPF 229 (558)
T ss_pred CCCC
Confidence 9986
No 249
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.71 E-value=0.00064 Score=64.51 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccC----CCCeEEEEcCCCCcc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~~~~ 98 (499)
.+.+|||||||-.|.+.|..|++ .|++|+|+|+++.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtyt 126 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYT 126 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCccc
Confidence 46799999999999999999965 479999999987643
No 250
>PRK07045 putative monooxygenase; Reviewed
Probab=97.71 E-value=2.8e-05 Score=78.80 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=33.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
.+.+|+|||||++|+++|..|++.|++|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3579999999999999999999999999999988754
No 251
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.70 E-value=7.3e-05 Score=82.27 Aligned_cols=92 Identities=24% Similarity=0.454 Sum_probs=68.6
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---C----C--CCCHHHHHHHHHHHHhC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---l----~--~~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||||+.|+.+|..|++.+ .+|+++++.. + + | .++.++.+...+.+++.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~ 494 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRG--------------YDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKL 494 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHC
Confidence 35679999999999999999999877 8999999742 1 1 2 23556666667788899
Q ss_pred CCEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCC-cc
Q 010844 298 GVRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (499)
Q Consensus 298 gV~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (499)
||+++.+... ...+.+++..+..+|.||+|+|.. |.
T Consensus 495 gv~~~~~~~v---~~~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 495 GVKFETDVIV---GKTITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CCEEECCCEE---CCcCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 9999988322 233445444456799999999984 54
No 252
>PRK06996 hypothetical protein; Provisional
Probab=97.70 E-value=0.00019 Score=73.03 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCC----CeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSL----YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g----~~V~lie~~~ 95 (499)
.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 479999999999999999999886 4799999874
No 253
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.70 E-value=0.00013 Score=81.02 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=64.9
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------CC--CCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------SS--FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~~--~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+ |. .+.+......+.+.+.|
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G--------------~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~G 601 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAG--------------HPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHG 601 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcC
Confidence 4579999999999999999999877 899999975321 22 24455555567778889
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+.-.. +.+.+.+...+|.||+|||..+.
T Consensus 602 Ve~~~g~~~d-----~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 602 VEFKYGCSPD-----LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred cEEEEecccc-----eEhhhhhcccccEEEECCCCCCC
Confidence 9999872111 22333345679999999999864
No 254
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.69 E-value=0.00013 Score=75.91 Aligned_cols=87 Identities=23% Similarity=0.325 Sum_probs=64.5
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cC-------C--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-IL-------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l-------~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+++|..|++.+ .+|+++++.. +. | .++.++.....+.+++.|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--------------~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 207 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--------------HTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEG 207 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCC
Confidence 4469999999999999999999876 7899998763 21 2 235566666778889999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCC
Q 010844 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
|+++.+ .+. .+ +.. ++....+|.||+|+|..
T Consensus 208 v~~~~~~~v~-~~---~~~-~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 208 IDFVTNTEIG-VD---ISA-DELKEQFDAVVLAGGAT 239 (485)
T ss_pred CEEECCCEeC-Cc---cCH-HHHHhhCCEEEEccCCC
Confidence 999988 442 11 111 12235799999999998
No 255
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.68 E-value=8.3e-05 Score=83.66 Aligned_cols=89 Identities=20% Similarity=0.380 Sum_probs=66.4
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c---C----CC--CCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I---L----SS--FDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~---l----~~--~~~~~~~~~~~~l~~~g 298 (499)
+.++|+|||||+.|+.+|..|++.+ .+|+++++.+ + + |. .+.++.+...+.+++.|
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G--------------~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~G 494 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYG--------------VDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIG 494 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--------------CcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999999887 8999999763 2 1 22 35677788888899999
Q ss_pred CEEEeCceEEEeCCeEEECCC-cEEeeeEEEEcCCCC
Q 010844 299 VRLVRGIVKDVDSQKLILNDG-TEVPYGLLVWSTGVG 334 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g-~~i~~D~vi~a~G~~ 334 (499)
|+++++.+.. ..+.+++- +...+|.||+|||..
T Consensus 495 v~~~~~~~vg---~~~~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 495 VKIETNKVIG---KTFTVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred CEEEeCCccC---CccCHHHHhhccCCCEEEEecCCC
Confidence 9999984321 12222221 124689999999985
No 256
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.67 E-value=0.00017 Score=74.95 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=63.1
Q ss_pred CCcEEEECCchHHHHHHHhc---cCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGI---DTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFLS 138 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L---~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (499)
.++|+|||||+.|+.+|..+ .+.|.+|+||++.+...- ..+ .++...+.+. +. ..++.++.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~----------~~d-~~~~~~l~~~---L~-~~GI~i~~~ 251 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR----------GFD-STLRKELTKQ---LR-ANGINIMTN 251 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc----------ccC-HHHHHHHHHH---HH-HcCCEEEcC
Confidence 47899999999999999655 445899999998875321 011 1122222222 32 256776654
Q ss_pred -EEEEEECCC-C--EEEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 139 -HCAGIDTDN-H--VVHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 139 -~v~~id~~~-~--~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
.++.++.+. . .+.+.+ + .++++|.+++|+|..|+..
T Consensus 252 ~~v~~i~~~~~~~~~v~~~~---g--------~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 252 ENPAKVTLNADGSKHVTFES---G--------KTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEEEEcCCceEEEEEcC---C--------CEEEcCEEEEeeCCCcCcc
Confidence 677776532 2 233322 2 3799999999999998764
No 257
>PRK06834 hypothetical protein; Provisional
Probab=97.66 E-value=0.00045 Score=72.00 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccCCCCC
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLPK 346 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~~ 346 (499)
.+.+.+.+.+++.||+++.+ ++++++. + .+++.+|+++.+|+||.|.|..+. .-+.+++..
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~-vR~~lgi~~ 166 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL-VRKAAGIDF 166 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC-cHhhcCCCC
Confidence 34445556677789999998 8888754 3 355567888999999999999874 333344433
No 258
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.66 E-value=0.00011 Score=70.69 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE-EEE
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL-SHC 140 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 140 (499)
+++++|||||+.||..+--..+.|.+||+||--+... +.++. ++...+.++ + ...++.|.. .+|
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~----------~~mD~-Eisk~~qr~---L-~kQgikF~l~tkv 275 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIG----------GVMDG-EISKAFQRV---L-QKQGIKFKLGTKV 275 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhc----------cccCH-HHHHHHHHH---H-HhcCceeEeccEE
Confidence 5789999999999999988889999999999765422 12222 223333333 2 236777766 488
Q ss_pred EEEECCCC-E--EEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 141 AGIDTDNH-V--VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 141 ~~id~~~~-~--v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
..++.+.. . +.+++..+ ++..++++|.|.+|+|-+|..-
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~------~k~~tle~DvlLVsiGRrP~t~ 317 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKT------GKKETLECDVLLVSIGRRPFTE 317 (506)
T ss_pred EEeeccCCCceEEEEEecCC------CceeEEEeeEEEEEccCccccc
Confidence 88887766 4 44444322 3467899999999999998764
No 259
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00039 Score=67.36 Aligned_cols=90 Identities=24% Similarity=0.381 Sum_probs=69.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCCCc------------CC-----CCCHHHHHHHHHH
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEANEI------------LS-----SFDDRLRHYATTQ 293 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~~~------------l~-----~~~~~~~~~~~~~ 293 (499)
.|+||||||.|+-.|.++.+.+ .+ +.+++.... .| ...+++.+.+.+.
T Consensus 5 DviIIG~GPAGl~AAiya~r~~--------------l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~ 70 (305)
T COG0492 5 DVIIIGGGPAGLTAAIYAARAG--------------LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQ 70 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHH
Confidence 7999999999999999998876 44 444443211 11 2356788888888
Q ss_pred HHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 294 LSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 294 l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+..|+++....|.+++.. .|.+++++ +.++.||+|||..+.
T Consensus 71 a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 71 AEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HhhcCeEEEEEEEEEEeecCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 8889999998878888765 35556666 999999999999886
No 260
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.65 E-value=0.00011 Score=76.11 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=66.1
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CC--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+.+|..|+..+ .+|+++++.+ + +| .++.++.....+.+++.|
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G--------------~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~G 205 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAG--------------VQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMG 205 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------------CeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCC
Confidence 4579999999999999999998876 7899998763 2 12 235666667778889999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ .+.. .+.+++ ....+|.||+|+|..+.
T Consensus 206 v~~~~~~~v~~----~~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 206 IEFHLNCEVGR----DISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CEEECCCEeCC----ccCHHH-HHhcCCEEEEEeCCCCC
Confidence 999988 4421 122222 23469999999999874
No 261
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.64 E-value=0.00046 Score=70.03 Aligned_cols=60 Identities=25% Similarity=0.327 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
.+.+.+.+.+++.|++++.+ +|++++.+ .+++++|+++.+|+||.|.|..+. +.+.++++
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~~g~~ 178 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST-LRELAGLP 178 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch-HHHhhcCC
Confidence 44556666777889999988 88887543 356678889999999999999884 33344443
No 262
>PRK06185 hypothetical protein; Provisional
Probab=97.63 E-value=4.6e-05 Score=77.76 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...+|+|||||++|+++|..|++.|++|+|||+++.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 457999999999999999999999999999998753
No 263
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.62 E-value=4.3e-05 Score=77.48 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+|+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 6899999999999999999999999999999874
No 264
>PRK07233 hypothetical protein; Provisional
Probab=97.62 E-value=4.5e-05 Score=78.50 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeE--EECCCcEEeeeEEEEcCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QKL--ILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v--~~~~g~~i~~D~vi~a~G~ 333 (499)
..+.+.+.+.+++.|++++.+ +|.+|+. +.+ ...+++++.+|.||+|++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 467778888888999999999 8988863 333 3456778999999999975
No 265
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.60 E-value=0.0005 Score=66.57 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=66.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC-------------------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS------------------------------- 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~------------------------------- 280 (499)
.|+|||||++|+-+|..|++.+ .+|+++++.+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--------------~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 67 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--------------LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGAR 67 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--------------CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEE
Confidence 5899999999999999998766 7788887652110
Q ss_pred --------------------CCCHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe--EEECC-CcEEeeeEEEEcCCCC
Q 010844 281 --------------------SFDDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK--LILND-GTEVPYGLLVWSTGVG 334 (499)
Q Consensus 281 --------------------~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~--v~~~~-g~~i~~D~vi~a~G~~ 334 (499)
-...++.+.+.+.+++.|++++.+ ++.++. ++. +.+++ +.++.+|.||.|+|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 68 FFSPNGDSVEIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred EEcCCCcEEEeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 002245667777788889999988 777754 343 33343 4689999999999987
Q ss_pred cc
Q 010844 335 PS 336 (499)
Q Consensus 335 p~ 336 (499)
..
T Consensus 148 s~ 149 (295)
T TIGR02032 148 SI 149 (295)
T ss_pred hH
Confidence 63
No 266
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.59 E-value=5.3e-05 Score=78.71 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=34.4
Q ss_pred CCcEEEECCchHHHHHHHhccCC----CCeEEEEcCCCCccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~----g~~V~lie~~~~~~~ 99 (499)
+++|+|||||++||+||+.|.+. |++|+|+|+++..+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG 43 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG 43 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcc
Confidence 46899999999999999999998 999999999987643
No 267
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.59 E-value=5.9e-05 Score=76.04 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 368999999999999999999999999999976
No 268
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.59 E-value=5.4e-05 Score=77.34 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=32.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+||+|||||++|+++|++|++.|++|+|+|+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 269
>PLN02576 protoporphyrinogen oxidase
Probab=97.58 E-value=6.2e-05 Score=78.97 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=35.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCCcccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~~~~~ 100 (499)
.+++|+|||||++||+||++|.+. |++|+|+|+++..+..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 356899999999999999999999 9999999999876543
No 270
>PRK07538 hypothetical protein; Provisional
Probab=97.57 E-value=5.9e-05 Score=77.16 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 4799999999999999999999999999998864
No 271
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.54 E-value=6.6e-05 Score=76.21 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|+|||||++|+++|..|++.|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 36899999999999999999999999999999864
No 272
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.54 E-value=6.7e-05 Score=77.99 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCcEEEECCchHHHHHHHhccCC------CCeEEEEcCCCCcccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS------LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~------g~~V~lie~~~~~~~~ 100 (499)
|++|+|||||++||+||+.|.+. |++|+|+|++++.+..
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 36799999999999999999875 4799999999876544
No 273
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.54 E-value=7.1e-05 Score=74.92 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+++|+|||||++|+.+|..|++.|++|+|||+++.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 36899999999999999999999999999998754
No 274
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.53 E-value=6.7e-05 Score=75.79 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=32.8
Q ss_pred CcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCcc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~~ 98 (499)
++|+|||||++||+||++|++.+ ++|+|+|++++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCC
Confidence 47999999999999999999998 9999999987654
No 275
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.53 E-value=7.5e-05 Score=75.30 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcchhcccC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
+..+...+.+.+.+.|++++.+ +|++++. + .|.+++| ++.+|.||+|+|.....++..+
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~ 211 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL 211 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc
Confidence 3566666777778899999988 7888754 2 3455555 7999999999998876655433
No 276
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.50 E-value=0.0001 Score=73.54 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
.+|+|||||++|+++|..|++.|.+|+|||++++.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 5899999999999999999999999999999876543
No 277
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.49 E-value=0.00084 Score=68.21 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHhC-CCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 287 RHYATTQLSKS-GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~-gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+. +|+++.+ ++.+++.+ .+++.+|+++.+|+||.|.|..+.
T Consensus 112 ~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 112 HLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 34445555555 4999988 88888643 355678889999999999998875
No 278
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.48 E-value=0.0009 Score=67.82 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=63.3
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC-------------------------------
Q 010844 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS------------------------------- 280 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~------------------------------- 280 (499)
|+|||||+.|.-+|..|++.+ .+|+++++.+ +..
T Consensus 2 viIiGaG~AGl~~A~~la~~g--------------~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELARPG--------------LRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYR 67 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCC--------------CeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEe
Confidence 899999999999999988755 5666666431 100
Q ss_pred --------------CCCHHHHHHHHHHHHhCCCEEEeCceEEEeCC-----eEEECCCcEEeeeEEEEcCCCCc
Q 010844 281 --------------SFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ-----KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 281 --------------~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
--...+.+.+.+.+.+.|++++.+++..++.+ .|++++|+++.+|.||.|+|..+
T Consensus 68 ~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 68 FPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCcchhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00123445566666777999876677776543 36667888999999999999876
No 279
>PTZ00367 squalene epoxidase; Provisional
Probab=97.46 E-value=0.00012 Score=77.19 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..++|+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45899999999999999999999999999999875
No 280
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.46 E-value=0.00011 Score=78.30 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=33.2
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++.+|+|||||++||++|..|++.|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 345799999999999999999999999999999875
No 281
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.45 E-value=0.00011 Score=76.90 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=33.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
+||||||||++||+||..|++.|++|+|+|+++...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999997653
No 282
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00011 Score=74.33 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEe-C-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCC
Q 010844 284 DRLRHYATTQLSKSGVRLVR-G-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~-~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~ 343 (499)
..+...+.+.+++.|+..+. + .+..++.+ .|.+.+|+ +.+|.||+|+|...+.+....+
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~~~~~ 220 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG 220 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHHHhcC
Confidence 57777888888999966554 4 67777764 46666666 9999999999988776544333
No 283
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.45 E-value=0.0003 Score=73.13 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=64.2
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+.+|..|++.+ .+|+++++...+ | .++.++.....+.+.+.|
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G--------------~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~g 207 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAG--------------HKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEG 207 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCC
Confidence 4569999999999999999998876 789999976322 1 135566666667788999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010844 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
|+++.+.....+ +.. +.....+|.||+|+|..+
T Consensus 208 v~~~~~~~v~~~---~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 208 IEFRTNVEVGKD---ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred cEEEeCCEECCc---CCH-HHHHhhCCEEEEecCCCC
Confidence 999988422211 111 112357999999999974
No 284
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.44 E-value=0.0011 Score=67.62 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcchhcccCCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+.+.+.+.+.+.|++++.+ +|++++.+ .+++++|+++.+|+||.|.|..+. +.+.++++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 345666777778889999988 88888543 366678889999999999998875 33334443
No 285
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.44 E-value=9.2e-05 Score=72.33 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCCcEEEECCchHHHHHHHhccC--------------CCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDT--------------SLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPA 126 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~--------------~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 126 (499)
+.-++|||||||.|+.+|.+|+. ...+|||||..++.. ... ...+.++...
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL-----~mF----------dkrl~~yae~ 281 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL-----NMF----------DKRLVEYAEN 281 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH-----HHH----------HHHHHHHHHH
Confidence 34589999999999999998853 356899999987532 111 1122222222
Q ss_pred cccCCCeEEEEE-EEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010844 127 ISREPGSYFFLS-HCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 127 ~~~~~~~~~~~~-~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
+....++.+..+ .|..++ .+.+.++.. + |+..+++|--||-|||..++.
T Consensus 282 ~f~~~~I~~~~~t~Vk~V~--~~~I~~~~~-~------g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 282 QFVRDGIDLDTGTMVKKVT--EKTIHAKTK-D------GEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred HhhhccceeecccEEEeec--CcEEEEEcC-C------CceeeecceEEEecCCCCCch
Confidence 333467777666 555554 456666653 2 234689999999999988764
No 286
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.43 E-value=0.0011 Score=67.26 Aligned_cols=91 Identities=27% Similarity=0.398 Sum_probs=68.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC--CcCCC-----C----------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN--EILSS-----F---------------------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--~~l~~-----~---------------------- 282 (499)
.|+|||||++|.-+|..|++.+ .+|+|+|+. ...+. +
T Consensus 4 dV~IvGaG~aGl~lA~~L~~~G--------------~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~ 69 (387)
T COG0654 4 DVAIVGAGPAGLALALALARAG--------------LDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGV 69 (387)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccC
Confidence 7999999999999999999866 566666653 11110 0
Q ss_pred ---------------------------------CHHHHHHHHHHHHhCC-CEEEeC-ceEEEeCC----eEEEC-CCcEE
Q 010844 283 ---------------------------------DDRLRHYATTQLSKSG-VRLVRG-IVKDVDSQ----KLILN-DGTEV 322 (499)
Q Consensus 283 ---------------------------------~~~~~~~~~~~l~~~g-V~v~~~-~v~~v~~~----~v~~~-~g~~i 322 (499)
...+.+.+.+.+.+.+ |+++.+ +|+.++.+ .++++ ||+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~ 149 (387)
T COG0654 70 PPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETL 149 (387)
T ss_pred CceeeEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEE
Confidence 1245566667776665 999998 88888754 37778 99999
Q ss_pred eeeEEEEcCCCCcc
Q 010844 323 PYGLLVWSTGVGPS 336 (499)
Q Consensus 323 ~~D~vi~a~G~~p~ 336 (499)
.||+||-|-|....
T Consensus 150 ~a~llVgADG~~S~ 163 (387)
T COG0654 150 DADLLVGADGANSA 163 (387)
T ss_pred ecCEEEECCCCchH
Confidence 99999999997764
No 287
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.42 E-value=0.00017 Score=74.29 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.8
Q ss_pred cEEEECCchHHHHHHHhccCCC---CeEEEEcCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPR 94 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g---~~V~lie~~ 94 (499)
||||||||+||..+|..|++.+ ++|+|||..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 6999999999999999999876 899999965
No 288
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.42 E-value=0.00014 Score=75.01 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHhccC----CCCeEEEEcCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~ 95 (499)
++|+|||||++|+++|..|++ .|++|+|||+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 479999999999999999998 799999999943
No 289
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.42 E-value=0.00032 Score=75.65 Aligned_cols=89 Identities=15% Similarity=0.266 Sum_probs=66.5
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+..|..|+..+ .+|+++++.+.+ | .++..+.+...+.+++.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~G 374 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAG--------------VQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMG 374 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcC--------------CcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCC
Confidence 4679999999999999999999877 789999986421 1 246666666778889999
Q ss_pred CEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 299 VRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+ .+.. .+.+++ ....+|.||+|+|..+.
T Consensus 375 v~~~~~~~v~~----~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 375 IDFHLNCEIGR----DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred eEEEcCCccCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 999988 4421 122222 23468999999998754
No 290
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.41 E-value=0.00096 Score=70.04 Aligned_cols=89 Identities=25% Similarity=0.352 Sum_probs=62.7
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC------CC---------------C-------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL------SS---------------F------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l------~~---------------~------- 282 (499)
.|+|||||+.|+++|..+++.+ .+|.++++. +.+ |. +
T Consensus 6 DVIVVGGGpAG~eAA~~aAR~G--------------~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~ 71 (618)
T PRK05192 6 DVIVVGGGHAGCEAALAAARMG--------------AKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKA 71 (618)
T ss_pred eEEEECchHHHHHHHHHHHHcC--------------CcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHH
Confidence 7999999999999999999877 777777764 111 00 0
Q ss_pred --------------------------CH-HHHHHHHHHHHhC-CCEEEeCceEEEe--CC---eEEECCCcEEeeeEEEE
Q 010844 283 --------------------------DD-RLRHYATTQLSKS-GVRLVRGIVKDVD--SQ---KLILNDGTEVPYGLLVW 329 (499)
Q Consensus 283 --------------------------~~-~~~~~~~~~l~~~-gV~v~~~~v~~v~--~~---~v~~~~g~~i~~D~vi~ 329 (499)
+. .+...+.+.+.+. |++++.+.|.++. ++ +|.+.+|.++.|+.||.
T Consensus 72 ~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 72 IDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred HhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEE
Confidence 00 1123334445544 8898766777663 33 57788999999999999
Q ss_pred cCCCC
Q 010844 330 STGVG 334 (499)
Q Consensus 330 a~G~~ 334 (499)
|+|..
T Consensus 152 ATGTF 156 (618)
T PRK05192 152 TTGTF 156 (618)
T ss_pred eeCcc
Confidence 99954
No 291
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.41 E-value=0.00011 Score=77.26 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.|++++.+ .|.+|.. + +|++++|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 467788888899999999999 8888753 3 4777888899999999998853
No 292
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.41 E-value=0.00015 Score=76.06 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=33.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|||||||..|+++|+.|+++|++|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 458999999999999999999999999999999754
No 293
>PLN02697 lycopene epsilon cyclase
Probab=97.40 E-value=0.0011 Score=69.16 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=64.3
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC----------------------------
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------------------------- 281 (499)
..|+|||||+.|+.+|..+++.+ .+|.++++. +..+.
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~G--------------l~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~ 174 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLG--------------LNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYL 174 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--------------CcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEe
Confidence 37999999999999999998755 455555432 11000
Q ss_pred --------------C-CHHHHHHHHHHHHhCCCEEEeCceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcc
Q 010844 282 --------------F-DDRLRHYATTQLSKSGVRLVRGIVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 282 --------------~-~~~~~~~~~~~l~~~gV~v~~~~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+ ...+.+.+.+.+.+.|++++..+|.+++. +. +++.+|.++.+|.||.|+|..+.
T Consensus 175 ~~~~~~~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 175 DDDKPIMIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cCCceeeccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 0 12344556666677899986558888753 33 34577889999999999998773
No 294
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.39 E-value=0.00034 Score=75.56 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=65.7
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c-------CC--CCCHHHHHHHHHHHHhCC
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I-------LS--SFDDRLRHYATTQLSKSG 298 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~-------l~--~~~~~~~~~~~~~l~~~g 298 (499)
..++|+|||+|+.|+.+|..|+..+ .+|+++++.. + +| .++.++.+...+.+++.|
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G--------------~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~G 257 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKG--------------HDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMG 257 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--------------CcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcC
Confidence 4579999999999999999999876 8899999763 2 12 235666677777888999
Q ss_pred CEEEeCceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 299 VRLVRGIVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++.+.....+ +.+.+. ...+|.||+|||..+.
T Consensus 258 v~i~~~~~v~~d---v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 258 AEFRFNTVFGRD---ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred CEEEeCCcccCc---cCHHHH-HhhcCEEEEEcCCCCC
Confidence 999988432221 222222 2359999999998764
No 295
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.39 E-value=0.00052 Score=71.67 Aligned_cols=74 Identities=24% Similarity=0.285 Sum_probs=58.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEE
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDV 309 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v 309 (499)
++|+|+|+|.+|+++|..|...+ .+|+++++.+ ......+.+.|++.||+++.+ .+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G--------------~~V~~~d~~~------~~~~~~~~~~l~~~gv~~~~~~~~~-- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELG--------------ARVTVVDDGD------DERHRALAAILEALGATVRLGPGPT-- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc------hhhhHHHHHHHHHcCCEEEECCCcc--
Confidence 58999999999999999998877 8899998652 223345566788899999987 332
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 310 DSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
....+|+||.++|..|+
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred ----------ccCCCCEEEECCCcCCC
Confidence 12458999999999998
No 296
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.39 E-value=0.00013 Score=75.50 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=33.1
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+|+|||||++||+||+.|.+.|++|+|+|+++....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 599999999999999999999999999999987544
No 297
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.38 E-value=0.00016 Score=68.79 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
.+++|+|||+|++||+||+.|.++ ++|||+|.+.+...+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGh 45 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGH 45 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCc
Confidence 467999999999999999999886 799999999876554
No 298
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.38 E-value=0.00026 Score=76.13 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCC-CCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTS-LYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~-g~~V~lie~~~~ 96 (499)
++.+|+||||||+||++|..|++. |++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 357999999999999999999995 999999998854
No 299
>PRK07588 hypothetical protein; Provisional
Probab=97.38 E-value=0.0013 Score=66.81 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=32.7
Q ss_pred CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 297 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+++++.+ +|.+++. + .|++++|+++.+|+||-|.|.+..
T Consensus 115 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 115 GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 47999988 8888864 3 366789999999999999998765
No 300
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.38 E-value=0.00053 Score=69.92 Aligned_cols=88 Identities=13% Similarity=0.146 Sum_probs=56.7
Q ss_pred cccEEEeCcChHHHHHHHHHHH-HHHHHHHHhcCCCCCceEEEEEeCCCcCCC--------CC---HHHHHHHHHHHHhC
Q 010844 230 LLHCVVVGGGPTGVEFSGELSD-FIMRDVRQRYSHVKDYIHVTLIEANEILSS--------FD---DRLRHYATTQLSKS 297 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~-~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~--------~~---~~~~~~~~~~l~~~ 297 (499)
.++|+|||+||+|+.+|..|.. .+ .+|+++++.+.... .. ..+...+.+.+...
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g--------------~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~ 104 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHER--------------VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSP 104 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcC--------------CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhC
Confidence 3699999999999999997753 33 78999998632211 11 23444455556667
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++++.+ .|-. .+.+++= .-.+|.||+|+|..+.
T Consensus 105 ~v~f~gnv~VG~----Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 105 NYRFFGNVHVGV----DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred CeEEEeeeEecC----ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 8888754 3311 1111111 2269999999998864
No 301
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.38 E-value=0.0012 Score=67.45 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+++.|++++.+ ++.+++.+ .|++++|+++.+|+||.|.|....
T Consensus 114 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 114 VQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 3344555667779999988 78887542 356778889999999999998774
No 302
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.37 E-value=0.0017 Score=65.74 Aligned_cols=51 Identities=16% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.| ++++ + ++++++. + .+++++|+++.+|.||.|.|....
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence 34555666677776 9988 6 7887753 3 356678888999999999999764
No 303
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.35 E-value=0.00022 Score=74.05 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcch
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPST 337 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~~ 337 (499)
+.++...+.+.+++.|++++.+ .|.+++.+. |.+.+| ++.+|.||+|+|.....
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~t~~g-~v~A~~VV~Atga~s~~ 239 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEEGQPAVVRTPDG-QVTADKVVLALNAWMAS 239 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEeeCCceEEEeCCc-EEECCEEEEcccccccc
Confidence 4567778888889999999998 788886542 555555 69999999999976543
No 304
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.34 E-value=0.00026 Score=73.44 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=34.5
Q ss_pred CCCcEEEECCchHHHHHHHhccCC----CCeEEEEcCCCCcccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~----g~~V~lie~~~~~~~~ 100 (499)
.+++|+|||||.|||+||.+|.+. |.+|+|+|+++..+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~ 64 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGS 64 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCC
Confidence 357999999999999999999884 6899999999875543
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.33 E-value=0.00044 Score=74.88 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=65.0
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||+|+.|+.+|..|++.+ .+|+++++...+ | .++.++.....+.+++.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--------------~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~ 390 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--------------VAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAM 390 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHC
Confidence 35679999999999999999999877 889999986321 2 23556666667778889
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
||+++.+ .+.. .+.+++ ....+|.||+|+|....
T Consensus 391 Gv~~~~~~~v~~----~i~~~~-~~~~~DavilAtGa~~~ 425 (654)
T PRK12769 391 GIEFELNCEVGK----DISLES-LLEDYDAVFVGVGTYRS 425 (654)
T ss_pred CeEEECCCEeCC----cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 9999988 4421 111111 12369999999998653
No 306
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00026 Score=70.29 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=37.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTP 101 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~ 101 (499)
....+|+|||+|.+||.+|+.|.+.|++|+|+|.++++...-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 345799999999999999999999999999999998876653
No 307
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.32 E-value=0.00021 Score=74.97 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeCC----eEEECCC----cEEeeeEEEEcCCCCcchhcc
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDSQ----KLILNDG----TEVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~----~v~~~~g----~~i~~D~vi~a~G~~p~~~~~ 340 (499)
+..+...+.+..++.|++++.+ +|.++..+ .|.+.++ .++.++.||.|+|.+...+..
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 220 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIH 220 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHh
Confidence 3566666667778899999998 78887542 3555444 358999999999998876654
No 308
>PRK05868 hypothetical protein; Validated
Probab=97.31 E-value=0.0013 Score=66.24 Aligned_cols=41 Identities=7% Similarity=0.285 Sum_probs=33.5
Q ss_pred hCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 296 KSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..|++++.+ +|++++. + .++++||+++.+|+||-|-|.+..
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 358999988 7888854 3 466789999999999999998875
No 309
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.31 E-value=0.00081 Score=64.95 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
...||+|||||.+|-+.|..|++.|-+|.||||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4578999999999999999999999999999986
No 310
>PLN02568 polyamine oxidase
Probab=97.31 E-value=0.00024 Score=74.66 Aligned_cols=39 Identities=28% Similarity=0.480 Sum_probs=34.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCC-----CeEEEEcCCCCcccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSL-----YDVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g-----~~V~lie~~~~~~~~ 100 (499)
.++|+|||||+|||+||..|.+.| ++|+|+|+++.....
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr 48 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR 48 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCe
Confidence 478999999999999999999776 899999999876443
No 311
>PRK09126 hypothetical protein; Provisional
Probab=97.29 E-value=0.0022 Score=65.00 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=37.1
Q ss_pred HHHHHHHH-HhCCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 287 RHYATTQL-SKSGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l-~~~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+ +..|++++.+ +|.+++. + .|.+++|+++.+|+||.|.|..+.
T Consensus 113 ~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 113 RRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 33344444 3468999988 7888753 2 366778899999999999998775
No 312
>PRK06184 hypothetical protein; Provisional
Probab=97.29 E-value=0.0019 Score=67.84 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEE---CCCcEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LIL---NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~---~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+.|++++.+ ++.+++. ++ +++ .+++++.+|.||-|.|....
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence 4556667778889999999 8888864 33 344 45678999999999998864
No 313
>PLN02529 lysine-specific histone demethylase 1
Probab=97.29 E-value=0.00027 Score=76.22 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
...++|+|||||++||+||..|++.|++|+|+|+++.....
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 34678999999999999999999999999999998865443
No 314
>PRK08244 hypothetical protein; Provisional
Probab=97.28 E-value=0.0019 Score=67.67 Aligned_cols=52 Identities=21% Similarity=0.348 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEC--CC-cEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN--DG-TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~--~g-~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.|++++.+ ++.+++. ++ +.+. +| +++.+|+||.|.|.++.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 34555666677889999998 7887753 33 3343 45 47999999999999874
No 315
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.25 E-value=0.00025 Score=73.79 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.||++||..+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999975
No 316
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.25 E-value=0.00024 Score=72.77 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce---EEECCCcEEeeeEEEEcCCCCcchhcccC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK---LILNDGTEVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~---v~~~~g~~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
..+...+.+.+++.|++++.+ +|++++. +. |.++ +.++.+|.||+|+|.....+....
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~~l~~~~ 264 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYSTALLKPL 264 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchHHHHHHh
Confidence 466677778888999999988 8888854 32 4444 457999999999999876655444
No 317
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.24 E-value=0.00038 Score=75.52 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..+++|+|||||++||++|+.|.+.|++|+|+|+++..+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG 275 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG 275 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 3467899999999999999999999999999999986543
No 318
>PLN02676 polyamine oxidase
Probab=97.24 E-value=0.00031 Score=73.12 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=35.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFT 100 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~~~ 100 (499)
..+++|+|||||++||+||..|++.|+ +|+|+|+++.....
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~ 65 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGR 65 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCc
Confidence 345789999999999999999999998 69999999876543
No 319
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.23 E-value=0.00031 Score=73.64 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...||||||+|.||++||..+++.|.+|+|||+.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 457999999999999999999999999999998764
No 320
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.21 E-value=0.0036 Score=63.26 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCC-CEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKSG-VRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+.| ++++.+ +|++++. + .+.+++|+++.+|+||.|.|....
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence 34555566666776 999988 7888754 3 356678889999999999998764
No 321
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.20 E-value=0.0003 Score=73.63 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCcEEeeeEEEEcCCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~~i~~D~vi~a~G~~ 334 (499)
..+.+.+.+.+++.|++++.+ .|.+|.. + +|.+.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 467788888899999999999 8888753 2 6778889899999999998864
No 322
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.20 E-value=0.00033 Score=68.52 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+.+|||||||.+|+++|..|.+.|++|+|+|++..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 46899999999999999999999999999998643
No 323
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.19 E-value=0.00031 Score=69.78 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=33.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCC-eEEEEcCCCCcccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLY-DVVCVSPRNHMVFT 100 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~-~V~lie~~~~~~~~ 100 (499)
..+|||||||.|||+||.+|-+.|+ +++|+|.+++.+..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 4589999999999999999997765 69999999876543
No 324
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.19 E-value=0.00025 Score=72.68 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
||||||+|.|||+||..+++.|.+|+|||+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 699999999999999999999999999999875
No 325
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.19 E-value=0.00028 Score=73.27 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=32.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
+|+|||||++||++|..|++.|++|+|+|+++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999988754
No 326
>PRK07190 hypothetical protein; Provisional
Probab=97.19 E-value=0.0027 Score=66.22 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCc
Q 010844 286 LRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+.+.+.+.+++.|++++.+ +|++++. ++ +.+.+|+++.|+.||.|.|.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 3445556677889999999 8888853 33 4556788999999999999865
No 327
>PRK08013 oxidoreductase; Provisional
Probab=97.17 E-value=0.0038 Score=63.51 Aligned_cols=51 Identities=20% Similarity=0.211 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. ||+++.+ ++.+++. + .+++.+|+++.+|+||-|-|....
T Consensus 113 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~ 169 (400)
T PRK08013 113 IHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW 169 (400)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence 444455555554 7999988 8888754 2 356678999999999999998864
No 328
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.16 E-value=0.0025 Score=64.25 Aligned_cols=92 Identities=20% Similarity=0.376 Sum_probs=64.5
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-CC----------C------------------
Q 010844 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-SS----------F------------------ 282 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l-~~----------~------------------ 282 (499)
|+|||||++|.-+|..|.+.. .+.+|.++++. +.. +. .
T Consensus 2 viIvGaGpAGlslA~~l~~~~------------~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~ 69 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADAR------------PGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYF 69 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcC------------CCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEe
Confidence 899999999999999993321 12778888764 220 10 0
Q ss_pred ----------------CHHHHHHHHHHHHhCCCEEEeCceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 283 ----------------DDRLRHYATTQLSKSGVRLVRGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 283 ----------------~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...+.+.+.+.+.+.|+.++..+|.+|+.+ .+++++|+++.++.||-|.|..+.
T Consensus 70 ~~~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 70 PDGSRILIDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CCCceEEcccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 124555566666655665555588888765 357889999999999999996654
No 329
>PRK07121 hypothetical protein; Validated
Probab=97.16 E-value=0.00051 Score=71.91 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=32.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||+|.||++||.++++.|.+|+|||+.+.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 57999999999999999999999999999999865
No 330
>PRK07045 putative monooxygenase; Reviewed
Probab=97.16 E-value=0.0033 Score=63.68 Aligned_cols=52 Identities=25% Similarity=0.371 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~--~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+ .|++++.+ ++++++. + .|++++|+++.+|+||-|.|....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 344555555543 58999988 8888753 2 367788999999999999998874
No 331
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.16 E-value=0.0038 Score=63.88 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECC-C--cEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILND-G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~-g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. ||+++.+ ++.+++. + .|++.+ + .++.+|+||.|.|....
T Consensus 123 l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 123 LLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 344445555554 7999988 7888754 2 355543 2 36999999999998774
No 332
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.16 E-value=0.003 Score=64.87 Aligned_cols=51 Identities=20% Similarity=0.407 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEe--CCeE--EECCCcEEeeeEEEEcCCCCc
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVD--SQKL--ILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~v--~~~~g~~i~~D~vi~a~G~~p 335 (499)
++.+.+.+..++.|++++.+ +|.++. ++.+ ...++.++.+|.||.|+|...
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 34455666677889999998 788764 3333 335677899999999999854
No 333
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.15 E-value=0.00039 Score=73.53 Aligned_cols=86 Identities=12% Similarity=0.071 Sum_probs=53.1
Q ss_pred HHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEEC---CC--cEEee
Q 010844 256 DVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILN---DG--TEVPY 324 (499)
Q Consensus 256 ~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~---~g--~~i~~ 324 (499)
++.+.+|.++++..=-+..++..+ -+..+...+.+..+++|++++++ +|.++.. + +|.+. ++ .++.+
T Consensus 123 e~~~~eP~l~~~~~ga~~~~dg~v--dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A 200 (546)
T PRK11101 123 QALILEPAVNPALIGAVKVPDGTV--DPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHA 200 (546)
T ss_pred HHHHhCCCcCccceEEEEecCcEE--CHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEEC
Confidence 334456666544222222232111 23456666667778899999998 8888753 3 34442 23 47999
Q ss_pred eEEEEcCCCCcchhcccCC
Q 010844 325 GLLVWSTGVGPSTLVKSLD 343 (499)
Q Consensus 325 D~vi~a~G~~p~~~~~~~~ 343 (499)
|.||.|+|.+...+....+
T Consensus 201 ~~VVnAaG~wa~~l~~~~g 219 (546)
T PRK11101 201 PVVVNAAGIWGQHIAEYAD 219 (546)
T ss_pred CEEEECCChhHHHHHHhcC
Confidence 9999999998876655333
No 334
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.15 E-value=0.0021 Score=63.87 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEEC---CC--cEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILN---DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~---~g--~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.|++++.+ ++..++. ++ +.+. +| +++++|+||-|-|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 46666777778889999988 7776643 33 2232 33 37899999999999875
No 335
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.15 E-value=0.0037 Score=63.41 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++. ||+++.+ ++.+++. + .|.+++|+++.+|+||.|.|....
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 3445555666665 9999988 8888753 2 356678889999999999999875
No 336
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.14 E-value=0.0031 Score=64.31 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=36.2
Q ss_pred HHHHHHHHh-CCCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 288 HYATTQLSK-SGVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 288 ~~~~~~l~~-~gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+ .||+++.+ +|++++.+ .|.+++|+++.+|+||-|.|....
T Consensus 115 ~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 115 LALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred HHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 334444444 37999888 78887532 467788999999999999997654
No 337
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.13 E-value=0.00036 Score=74.45 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=40.8
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..|.|.||.+.++ +.|++||+|+|+.-. .|...+ ......|.-.|+.+++++...++
T Consensus 354 ~~GGi~vd~~~~t-~I~GLyAaGE~~~g~--hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~ 411 (589)
T PRK08641 354 SMGGLWVDYDQMT-NIPGLFAAGECDYSY--HGANRLGANSLLSAIYGGMVAGPNAVEYIK 411 (589)
T ss_pred eCCCeEECCCCCe-ECCCEEECcccccCC--CCCCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999888 899999999997421 122222 23455677889999998877654
No 338
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.13 E-value=0.0033 Score=66.00 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHHHhC-CCEEEeCceEEEe---CC---eEEECCCcEEeeeEEEEcCCCCc
Q 010844 288 HYATTQLSKS-GVRLVRGIVKDVD---SQ---KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 288 ~~~~~~l~~~-gV~v~~~~v~~v~---~~---~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
..+.+.+++. |++++.+.+.++. ++ +|.+.+|.++.||.||+|+|...
T Consensus 100 ~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 100 KAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3455556666 8899877666652 22 57888898999999999999984
No 339
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.014 Score=60.06 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=77.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceE-EEEEeCC-CcC-----------------------------
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIH-VTLIEAN-EIL----------------------------- 279 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~-Vtlv~~~-~~l----------------------------- 279 (499)
.+|+|||||.+|+-+|..|.+.+ .. +.+++++ ++-
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g--------------~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~ 74 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAG--------------VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRW 74 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHcC--------------CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCC
Confidence 48999999999999999999877 33 5555543 111
Q ss_pred ----CCCCHHHHHHHHHHHHhCCCEEEeC---ceE--EEeCC----eEEECCCcE--EeeeEEEEcCCCCcchhcccC-C
Q 010844 280 ----SSFDDRLRHYATTQLSKSGVRLVRG---IVK--DVDSQ----KLILNDGTE--VPYGLLVWSTGVGPSTLVKSL-D 343 (499)
Q Consensus 280 ----~~~~~~~~~~~~~~l~~~gV~v~~~---~v~--~v~~~----~v~~~~g~~--i~~D~vi~a~G~~p~~~~~~~-~ 343 (499)
+.+. .+.+++.+.+++.++..... .|. ..+.+ .|+++++.+ +.+|.||+|||.-..+.+-.. |
T Consensus 75 ~~~~~~~~-~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G 153 (443)
T COG2072 75 DEAFAPFA-EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG 153 (443)
T ss_pred cccCCCcc-cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCC
Confidence 0111 27888889999888765532 333 33333 477777765 559999999999554433222 2
Q ss_pred CCCCCCCceeeCCCCCC---CCCCCeEEecccc
Q 010844 344 LPKSPGGRIGIDEWLRV---PSVQDVFAVGDCS 373 (499)
Q Consensus 344 l~~~~~G~i~vd~~l~~---~~~~~Ifa~GD~a 373 (499)
++ +-.|.+.--.++.- -.-++|-+||--+
T Consensus 154 ~~-~f~g~~~HS~~~~~~~~~~GKrV~VIG~Ga 185 (443)
T COG2072 154 LD-EFKGRILHSADWPNPEDLRGKRVLVIGAGA 185 (443)
T ss_pred cc-CCCceEEchhcCCCccccCCCeEEEECCCc
Confidence 22 22344333222211 1346777777555
No 340
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.11 E-value=0.0025 Score=66.80 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=77.9
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCCC----------------------------
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILSS---------------------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~~---------------------------- 281 (499)
|+|+|||||++|+-.|..|.+.+ .+++++|+. ++-..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g--------------~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~ 67 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEG--------------LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMA 67 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT---------------EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSC
T ss_pred CEEEEECccHHHHHHHHHHHHCC--------------CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhc
Confidence 59999999999999999998876 788888875 32110
Q ss_pred ---C-----------CHHHHHHHHHHHHhCCC--EEEeC-ceEEEeC--C-------eEEECC-C--cEEeeeEEEEcCC
Q 010844 282 ---F-----------DDRLRHYATTQLSKSGV--RLVRG-IVKDVDS--Q-------KLILND-G--TEVPYGLLVWSTG 332 (499)
Q Consensus 282 ---~-----------~~~~~~~~~~~l~~~gV--~v~~~-~v~~v~~--~-------~v~~~~-g--~~i~~D~vi~a~G 332 (499)
+ ..++.++++.+.+..++ .+..+ +|.+++. + .|++++ | ++..+|.||+|+|
T Consensus 68 fsdfp~p~~~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG 147 (531)
T PF00743_consen 68 FSDFPFPEDYPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATG 147 (531)
T ss_dssp CTTS-HCCCCSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-
T ss_pred CCCcCCCCCCCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCC
Confidence 1 14678888888887776 35566 7777742 1 355543 3 2456999999999
Q ss_pred CCcchhccc---CCCCCCCCCceeeCCCCCCC---CCCCeEEeccccc
Q 010844 333 VGPSTLVKS---LDLPKSPGGRIGIDEWLRVP---SVQDVFAVGDCSG 374 (499)
Q Consensus 333 ~~p~~~~~~---~~l~~~~~G~i~vd~~l~~~---~~~~Ifa~GD~a~ 374 (499)
.-..+.+-. -|++. -.|.+.--..++.+ ...+|-++|-..+
T Consensus 148 ~~~~P~~P~~~~~G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 148 HFSKPNIPEPSFPGLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SSSCESB-----CTGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CcCCCCCChhhhhhhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 864432211 13322 24666554444432 2467888886553
No 341
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.11 E-value=0.00055 Score=72.33 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||||.|||+||..+++.|.+|+|||+...
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 47999999999999999999999999999999764
No 342
>PRK06753 hypothetical protein; Provisional
Probab=97.10 E-value=0.0027 Score=63.88 Aligned_cols=39 Identities=15% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCEEEeC-ceEEEeCC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDSQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++++.+ +|++++.+ .+++++|+++.+|+||-|-|..+.
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4567777 78888543 466788999999999999998765
No 343
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.09 E-value=0.00039 Score=75.50 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCCcEEeeeEEEEcCCCCcchhcc
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDGTEVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g~~i~~D~vi~a~G~~p~~~~~ 340 (499)
+..+...+.+.+++ |++++.+ .|.+++. +. |.+.+|..+.+|.||+|+|.....+..
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~ 468 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQ 468 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccc
Confidence 45777778888888 9999988 7887753 33 455667678899999999998775544
No 344
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.09 E-value=0.00045 Score=71.27 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=31.5
Q ss_pred cEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCc
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHM 97 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~ 97 (499)
||||||||.||++||..+++.| .+|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCC
Confidence 6999999999999999999999 999999998653
No 345
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.08 E-value=0.00043 Score=76.22 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=31.4
Q ss_pred CcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~ 96 (499)
++|+|||||+|||++|..|++. |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999987 899999999875
No 346
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.06 E-value=0.00096 Score=73.14 Aligned_cols=35 Identities=29% Similarity=0.250 Sum_probs=31.5
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
...++|+|||+||.|+.+|..|+..+ .+||++++.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--------------h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--------------HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--------------CeEEEEccc
Confidence 46789999999999999999999877 899999974
No 347
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00075 Score=66.83 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=31.8
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
...++|||||||.||..||...++.|.+.+|+..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45689999999999999999999999999998866
No 348
>PRK13984 putative oxidoreductase; Provisional
Probab=97.05 E-value=0.0013 Score=70.63 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=64.6
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (499)
++.++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.. | .++.++.....+.+++.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G--------------~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~ 346 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMG--------------YEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEAL 346 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999999876 899999876321 1 13455556666788899
Q ss_pred CCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCc
Q 010844 298 GVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 298 gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
||+++.+ .|.. + +.+++ ...++|.||+|+|..+
T Consensus 347 gv~~~~~~~v~~-~---~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 347 GVKIHLNTRVGK-D---IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred CcEEECCCEeCC-c---CCHHH-HHhcCCEEEEEcCcCC
Confidence 9999988 4421 1 11111 2357999999999864
No 349
>PLN02612 phytoene desaturase
Probab=97.05 E-value=0.0007 Score=71.92 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce----EEECCCcEEeeeEEEEcCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK----LILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~----v~~~~g~~i~~D~vi~a~G~ 333 (499)
..+.+.+.+.|++.|++|+++ +|.+|+. ++ +.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 567788888888899999999 8999863 33 66778989999999999753
No 350
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.05 E-value=0.0059 Score=53.19 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCCEEE--eCceEEEeCC----eEEECCCcEEeeeEEEEcCCC
Q 010844 297 SGVRLV--RGIVKDVDSQ----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 297 ~gV~v~--~~~v~~v~~~----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
.||++. ..+|.+++.. .+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 465555 3377777543 477889999999999999995
No 351
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.03 E-value=0.0016 Score=60.55 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCC------CeEEEEcCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSL------YDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g------~~V~lie~~ 94 (499)
..++|+|||||..|..+|++|.+.+ .+|||||..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3489999999999999999999875 789999955
No 352
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.03 E-value=0.0059 Score=61.83 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. ++. +.+ +|.+++. + .|++++|+++.+|+||.|.|....
T Consensus 113 l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 113 LNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP 168 (388)
T ss_pred HHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence 444555556555 465 556 7877743 3 356678889999999999999764
No 353
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.03 E-value=0.0036 Score=63.35 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 297 SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 297 ~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.|++++.+ ++.+++. + .+++++|+++.+|+||.|.|..+.
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~ 168 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ 168 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence 37888888 7888753 3 577889999999999999999875
No 354
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.02 E-value=0.0006 Score=73.14 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHhcCCCCCc-----eEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-ceEEEeC----C---eEEE---C
Q 010844 255 RDVRQRYSHVKDY-----IHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-IVKDVDS----Q---KLIL---N 317 (499)
Q Consensus 255 ~~~~~~~~~~~~~-----~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~----~---~v~~---~ 317 (499)
.++.+.+|.++++ ..=.++..+ .+ -+..+...+.+..++.|++++.+ +|.++.. + +|.+ .
T Consensus 200 ~e~~~~~P~L~~~~~~~~l~ga~~~~Dg~v---dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~ 276 (627)
T PLN02464 200 KESLELFPTLAKKGKDGSLKGTVVYYDGQM---NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL 276 (627)
T ss_pred HHHHHhCCCCCccccccceeEEEEecCcEE---cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC
Confidence 3445567777643 222222222 22 25677778888889999999998 8888742 2 2343 2
Q ss_pred CCc--EEeeeEEEEcCCCCcchhcccC
Q 010844 318 DGT--EVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 318 ~g~--~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
+++ ++.+|.||.|+|.+...+...+
T Consensus 277 tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 277 TGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred CCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 343 6899999999999987665544
No 355
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.02 E-value=0.0045 Score=63.87 Aligned_cols=51 Identities=20% Similarity=0.433 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEe--CC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSGVRLVRGIVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+..++.||+++.++|.++. ++ .|++++|+++.+|++|=|+|+...
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 3444455566889999998776553 23 577889999999999999998764
No 356
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.01 E-value=0.006 Score=60.88 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=52.1
Q ss_pred HhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCC--------CCCHH------HHHHHHH
Q 010844 227 KSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILS--------SFDDR------LRHYATT 292 (499)
Q Consensus 227 ~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~--------~~~~~------~~~~~~~ 292 (499)
..-.++++|||||.+|++.|.+|++.| .+|+|++..+.+. .||.. +.-.+.+
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G--------------~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~ 186 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMG--------------FKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVE 186 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcC--------------CeEEEEecCCcccccHHhhhccCCCcccchhhccchhhh
Confidence 344579999999999999999999998 9999999864322 12221 2222333
Q ss_pred HHHhCCCEEEeC-ceEEEeCC
Q 010844 293 QLSKSGVRLVRG-IVKDVDSQ 312 (499)
Q Consensus 293 ~l~~~gV~v~~~-~v~~v~~~ 312 (499)
.-...+|++++. +|+++++.
T Consensus 187 v~~hp~i~l~TyaeV~ev~G~ 207 (622)
T COG1148 187 VSNHPNIELITYAEVEEVSGS 207 (622)
T ss_pred hccCCceeeeeeeeeeeeccc
Confidence 334568999998 89998764
No 357
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.01 E-value=0.0058 Score=62.18 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---CCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~~--~--v~~---~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+ .+|+++.+ +|++++.+ + +++ .+++++.+|+||-|-|....
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~ 168 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM 168 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence 444555555554 48999988 88888543 3 334 33467999999999998875
No 358
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.99 E-value=0.0015 Score=59.94 Aligned_cols=91 Identities=25% Similarity=0.315 Sum_probs=61.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEe--------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVR-------- 303 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~-------- 303 (499)
+++|||||..|+.+|..|+.+. |..+|.++..+.+.... .-.+.+.+++++-.|+=..
T Consensus 1 kfivvgggiagvscaeqla~~~------------psa~illitass~vksv--tn~~~i~~ylekfdv~eq~~~elg~~f 66 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLE------------PSAEILLITASSFVKSV--TNYQKIGQYLEKFDVKEQNCHELGPDF 66 (334)
T ss_pred CeEEEcCccccccHHHHHHhhC------------CCCcEEEEeccHHHHHH--hhHHHHHHHHHhcCccccchhhhcccH
Confidence 3789999999999999998754 33789999887543321 1122233444444433110
Q ss_pred ----CceEEEe--CCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 304 ----GIVKDVD--SQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 304 ----~~v~~v~--~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.|..++ +..+++++|.++.++.+++|+|.+|-
T Consensus 67 ~~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 67 RRFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred HHHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc
Confidence 1122232 34789999999999999999999996
No 359
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.98 E-value=0.0015 Score=69.67 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=63.3
Q ss_pred hccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhC
Q 010844 228 SRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKS 297 (499)
Q Consensus 228 ~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~ 297 (499)
...++|+|||+|++|+.+|..|+..+ .+|+++++.+.+ | .++.++.+.-.+.+++.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G--------------~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~ 200 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMG--------------HAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDL 200 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHC
Confidence 45679999999999999999998877 789999875321 1 23455666666677889
Q ss_pred CCEEEeC-ce-EEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IV-KDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v-~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|++++.+ .+ .++..+. ....+|.||+|+|..+.
T Consensus 201 Gv~~~~~~~~~~~~~~~~------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 201 GVEVRLGVRVGEDITLEQ------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCEEEeCCEECCcCCHHH------HHhhCCEEEEeeCCCCC
Confidence 9999887 44 2221111 11248999999998754
No 360
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.96 E-value=0.0011 Score=69.15 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.++|+|||+|.+|+++|..|++.|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999999999999999999999999765
No 361
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.95 E-value=0.00099 Score=71.51 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 4699999999999999999999999999999874
No 362
>PRK06996 hypothetical protein; Provisional
Probab=96.94 E-value=0.0087 Score=60.88 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCC---cEEeeeEEEEcCCCCc
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG---TEVPYGLLVWSTGVGP 335 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g---~~i~~D~vi~a~G~~p 335 (499)
..+.+.+.+.+++.|++++.+ ++.+++. ++ +.+.++ +++.+|+||-|.|...
T Consensus 115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~ 174 (398)
T PRK06996 115 GSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLF 174 (398)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCc
Confidence 356777788888889999988 7887754 33 445543 5899999999999643
No 363
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.93 E-value=0.0067 Score=61.13 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKS-GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.+.+.+.+.+. +++++.+ ++.++.. + .+.++++ ++.+|+||-|-|....
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 4555556666665 4888877 7777743 2 4566665 8999999999998875
No 364
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.92 E-value=0.00097 Score=63.02 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=34.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
+.+++|||+|.+|+..|..|++.|.+|.|||++++.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 36899999999999999999999999999999998654
No 365
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.91 E-value=0.00088 Score=71.64 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4699999999999999999999999999999874
No 366
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.91 E-value=0.00066 Score=66.14 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=34.0
Q ss_pred CCCCcEEEECCchHHHHHHHhccC------CCCeEEEEcCCCCccccc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDT------SLYDVVCVSPRNHMVFTP 101 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~------~g~~V~lie~~~~~~~~~ 101 (499)
....+|||||||||||+||.+|++ ...+|.|+|+......+.
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 345799999999999999998864 357899999987655443
No 367
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.90 E-value=0.0058 Score=61.92 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEeC--C--eEEECC------C--cEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSGVRLVRGIVKDVDS--Q--KLILND------G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~~--~--~v~~~~------g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+...+.|++++.+.++++.. + .+++.+ | .++.+|+||-|.|....
T Consensus 94 fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 94 FDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred HHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 44455666677899998667776643 2 244442 2 47999999999998663
No 368
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.88 E-value=0.0016 Score=65.67 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||.+|+|+|..|++.+ .+|+++++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G--------------~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAG--------------VPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecc
Confidence 7999999999999999999987 899999965
No 369
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.88 E-value=0.011 Score=59.55 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=28.5
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.|+|||||.+|+-+|.+|++.+ .+|++++++
T Consensus 5 dv~IIGgGi~G~s~A~~L~~~g--------------~~V~lie~~ 35 (376)
T PRK11259 5 DVIVIGLGSMGSAAGYYLARRG--------------LRVLGLDRF 35 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--------------CeEEEEecc
Confidence 6999999999999999999876 889999875
No 370
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.88 E-value=0.00087 Score=65.16 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=30.4
Q ss_pred CcEEEECCchHHHHHHHhccCCC-CeEEEEcCCCCcc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~~~ 98 (499)
+|+||||+|++|..+|.+|++.+ .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 48999999999999999999986 7999999987644
No 371
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.87 E-value=0.00092 Score=69.59 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCC-CEEEeC-ceEEEeC--Ce---EEEC---CCc--EEeeeEEEEcCCCCcchhcccCCCC
Q 010844 284 DRLRHYATTQLSKSG-VRLVRG-IVKDVDS--QK---LILN---DGT--EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 284 ~~~~~~~~~~l~~~g-V~v~~~-~v~~v~~--~~---v~~~---~g~--~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
..+.+.+.+.+++.| ++++.+ +|.+++. ++ +.+. +|+ ++.+|.||+|+|.....+.+.+|++
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCC
Confidence 467777778888876 899998 8888763 32 4432 353 6999999999999988877776654
No 372
>PRK06185 hypothetical protein; Provisional
Probab=96.87 E-value=0.011 Score=60.33 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--Ce---EEE--CCCc-EEeeeEEEEcCCCCcchhcccCCCC
Q 010844 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--QK---LIL--NDGT-EVPYGLLVWSTGVGPSTLVKSLDLP 345 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~--~~---v~~--~~g~-~i~~D~vi~a~G~~p~~~~~~~~l~ 345 (499)
.+.+.+.+.+.+ .||+++.+ ++.++.. +. |.+ ++|+ ++.+|.||.|.|.... +.+.++++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~ 178 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLE 178 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCC
Confidence 344555555555 48999988 7887743 32 333 3564 7999999999998864 33334443
No 373
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.87 E-value=0.0089 Score=60.64 Aligned_cols=49 Identities=29% Similarity=0.352 Sum_probs=36.2
Q ss_pred HHHHHHHHh-CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 288 HYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 288 ~~~~~~l~~-~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+ .|++++.+ ++.++.. + .+++++|.++.+|.||.|.|....
T Consensus 116 ~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 116 QRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred HHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 344444544 47999987 7888753 3 356678888999999999998875
No 374
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=96.87 E-value=0.009 Score=60.33 Aligned_cols=52 Identities=17% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHh-CCCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSK-SGVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~-~gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+.+ .|++++.+ +|++++. + .+.+++|+++.+|+||.|.|....
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH
Confidence 455566666666 49999988 8888853 3 366678889999999999998764
No 375
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.87 E-value=0.00078 Score=71.82 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCceeeCCCCC----CCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 348 PGGRIGIDEWLR----VPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~----~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
-.|.|.||...| + ..|++||+|+|+.. ...|...+ ......|+-.|+.+++++...++
T Consensus 341 t~GGi~id~~~~v~~~t-~I~GLyAaGe~a~~-g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 341 SMGGIPTDYTGRVICET-IVKGLFAAGECACV-SVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cCCCeEECcCcccccCc-ccCCeeeccccccc-CcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 347789998888 6 89999999999741 01122111 24456788889999999877654
No 376
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.87 E-value=0.0086 Score=63.50 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeCC--e--EEEC--CC--cEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKS-GVRLVRG-IVKDVDSQ--K--LILN--DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~~--~--v~~~--~g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. |++++.+ ++++++.+ + ++++ +| +++.+|+||-|.|....
T Consensus 115 le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 115 LEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 444555556554 9999998 88888643 3 4444 46 47999999999998764
No 377
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.86 E-value=0.00081 Score=70.66 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||+| ||++||.++++.|.+|+|||+.+.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 5799999999 999999999999999999998754
No 378
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.85 E-value=0.0006 Score=64.17 Aligned_cols=94 Identities=21% Similarity=0.429 Sum_probs=60.6
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-C--cCCCC---CHHHHHH-----HHHHHHhCCC
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-E--ILSSF---DDRLRHY-----ATTQLSKSGV 299 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~--~l~~~---~~~~~~~-----~~~~l~~~gV 299 (499)
-+|+|||||.-|+-+|..+.+... .-+|-++++. + .-|.+ +..+... -+..|--.|.
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~------------~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a 107 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFYRKLG------------SGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGA 107 (446)
T ss_pred eEEEEEcCCcchhHHHHHHHhhcC------------CCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCc
Confidence 489999999999999998876541 2578888875 2 22332 1111110 0011111223
Q ss_pred EEEeCceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 300 RLVRGIVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+..+|.++++ +.|.+.+|++|.+|.+|+|+|..-+
T Consensus 108 ~wi~ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~ 146 (446)
T KOG3851|consen 108 TWIKEKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD 146 (446)
T ss_pred HHHHHHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec
Confidence 333335667765 4899999999999999999998766
No 379
>PRK09897 hypothetical protein; Provisional
Probab=96.85 E-value=0.0073 Score=63.23 Aligned_cols=42 Identities=21% Similarity=0.170 Sum_probs=29.5
Q ss_pred HhCC--CEEEeC-ceEEEeC--Ce--EEECC-CcEEeeeEEEEcCCCCcc
Q 010844 295 SKSG--VRLVRG-IVKDVDS--QK--LILND-GTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~g--V~v~~~-~v~~v~~--~~--v~~~~-g~~i~~D~vi~a~G~~p~ 336 (499)
.+.| ++++.+ +|++++. ++ +.+.+ +..+.+|.||+|+|..++
T Consensus 118 ~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p 167 (534)
T PRK09897 118 RQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWP 167 (534)
T ss_pred HHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCC
Confidence 3555 677767 7888854 33 44444 467999999999998654
No 380
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.84 E-value=0.00088 Score=71.55 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|||+..
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 4699999999999999999999999999999863
No 381
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.84 E-value=0.0013 Score=69.66 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
...||||||+|.||++||..+++ |.+|+|||+.+.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEccCC
Confidence 45799999999999999999964 899999998754
No 382
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.83 E-value=0.00081 Score=72.27 Aligned_cols=35 Identities=29% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||||.|||+||..+++.|.+|+|||+...
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 46999999999999999999999999999998743
No 383
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.82 E-value=0.001 Score=70.61 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||+|.|||+||..+++.|.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4799999999999999999999999999999987
No 384
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.81 E-value=0.0014 Score=66.96 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEe--CC----eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVD--SQ----KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~----~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.++.+.+.+.++..|.+++++ .|.+|. ++ +|++++|+++.|+.||......|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 367778888888999999999 899883 22 377889999999999999888876
No 385
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.81 E-value=0.0072 Score=68.56 Aligned_cols=93 Identities=16% Similarity=0.158 Sum_probs=64.3
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC----------CC-CHHHHHHHHHHHHhC
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS----------SF-DDRLRHYATTQLSKS 297 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~----------~~-~~~~~~~~~~~l~~~ 297 (499)
.++|+|||||+.|+..|.++++.+ .+|++++..+ +.. .. +.++.....+.+++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--------------~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 228 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--------------ARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAM 228 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--------------CcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcC
Confidence 468999999999999999998876 8999998752 211 01 123334455566656
Q ss_pred -CCEEEeC-ceEEEeCCe-EE----EC-------CC------cEEeeeEEEEcCCCCcc
Q 010844 298 -GVRLVRG-IVKDVDSQK-LI----LN-------DG------TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 -gV~v~~~-~v~~v~~~~-v~----~~-------~g------~~i~~D~vi~a~G~~p~ 336 (499)
+|+++.+ .|..+..+. +. .. ++ .++.+|.||+|||..+.
T Consensus 229 ~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r 287 (985)
T TIGR01372 229 PEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHER 287 (985)
T ss_pred CCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCc
Confidence 5999987 777765431 10 00 11 16899999999999876
No 386
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.00098 Score=70.84 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=41.0
Q ss_pred CCCceeeCCCCCCCCCCCeEEecccccc-ccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGY-LESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~-~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..|.|.||.+.|+++.|++||+|+|+.. .+ |...+ ......|.-.|+.+++++...++
T Consensus 345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g~h--Ganrlggnsl~~~~v~G~~Ag~~aa~~~~ 404 (566)
T PRK06452 345 YMGGIDVDIDGRNPDIVGLFSAGEAACVSVH--GANRLGSNSLLDTLVFGQVTGRTVVQFLK 404 (566)
T ss_pred ecCCeEECCCCCcCCcCCeEecccccccCCC--CcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3577999999998459999999999741 11 21111 23456688889999998877654
No 387
>PRK10015 oxidoreductase; Provisional
Probab=96.79 E-value=0.01 Score=60.95 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--CeEE--ECCCcEEeeeEEEEcCCCCc
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--QKLI--LNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~~v~--~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.+.+.+..++.|++++.+ +|.++.. +.+. ..++.++.+|.||.|.|...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 34445666777889999988 7887643 3332 23456899999999999854
No 388
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.79 E-value=0.00099 Score=71.44 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||||.|||+||..+++.|.+|+|||+...
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 46999999999999999999999999999998753
No 389
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.77 E-value=0.001 Score=71.24 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++. |.+|+|||+.+
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 36899999999999999999987 99999999875
No 390
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.77 E-value=0.0013 Score=70.71 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=31.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++.|.+|+|||+..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4699999999999999999999999999999754
No 391
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.77 E-value=0.0018 Score=64.01 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCC--CeEEEEcCCCCc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSL--YDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g--~~V~lie~~~~~ 97 (499)
...++|+|||||.++...+..|.+.+ .+|++|-+++.+
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 45689999999999999999998765 489999988643
No 392
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.77 E-value=0.0015 Score=69.54 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=33.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|||||+|.|||+||..+++.|.+|+|+|+.+..
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~ 46 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHF 46 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 479999999999999999999999999999998654
No 393
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.74 E-value=0.0012 Score=70.45 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..||||||||.|||+||..+++.|.+|+|+|+..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~ 40 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4689999999999999999999999999999874
No 394
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.74 E-value=0.0017 Score=66.36 Aligned_cols=88 Identities=23% Similarity=0.312 Sum_probs=66.0
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcC--------C--CCCHHHHHHHHHHHHhCCC
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEIL--------S--SFDDRLRHYATTQLSKSGV 299 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l--------~--~~~~~~~~~~~~~l~~~gV 299 (499)
.++|+|||+||.|+.+|..|++.+ ..||++++.... | .++.++.+...+.|++.||
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G--------------~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv 188 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAG--------------HDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGV 188 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCC--------------CeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCe
Confidence 369999999999999999999987 899999875321 2 2466888899999999999
Q ss_pred EEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 300 RLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 300 ~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+++.+ ++-. .+++++ -.-++|.|++++|..-.
T Consensus 189 ~~~~~~~vG~----~it~~~-L~~e~Dav~l~~G~~~~ 221 (457)
T COG0493 189 EFKLNVRVGR----DITLEE-LLKEYDAVFLATGAGKP 221 (457)
T ss_pred EEEEcceECC----cCCHHH-HHHhhCEEEEeccccCC
Confidence 99988 4421 122211 12245999999997654
No 395
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.74 E-value=0.0013 Score=70.17 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHhcc----CCCCeEEEEcCCC
Q 010844 64 RVVVLGSGWAGCRLMKGID----TSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~----~~g~~V~lie~~~ 95 (499)
+|||||||.|||+||..++ +.|.+|+|||+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 6999999999999999998 6799999999875
No 396
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.72 E-value=0.013 Score=60.74 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|..|++.. ++.+|++++++.
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~------------~G~~V~vlE~~~ 59 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQR------------PALDVLVLEADL 59 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEeCCc
Confidence 7999999999999999999861 117899998764
No 397
>PLN03000 amine oxidase
Probab=96.70 E-value=0.0016 Score=71.05 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=35.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
..++|+|||||++||.+|..|.+.|++|+|+|+++.....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 4579999999999999999999999999999998875443
No 398
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.011 Score=53.15 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=68.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHH-HHHhc--CCCCCceEEEEEeCCCcCCCC-----CHHHHHHHHHHHHhCCCEEEe
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRD-VRQRY--SHVKDYIHVTLIEANEILSSF-----DDRLRHYATTQLSKSGVRLVR 303 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~-~~~~~--~~~~~~~~Vtlv~~~~~l~~~-----~~~~~~~~~~~l~~~gV~v~~ 303 (499)
+|+|||.||.+--.|..+++.--+. +.+-+ ....++-+.|--..-+-+|.| ++++.+.+.+.-++.|.++++
T Consensus 10 ~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t 89 (322)
T KOG0404|consen 10 NVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT 89 (322)
T ss_pred eEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcceeee
Confidence 8999999999999888887642000 00000 011122222222111223444 468888999999999999999
Q ss_pred CceEEEeCCe---EEECCCcEEeeeEEEEcCCCCcc
Q 010844 304 GIVKDVDSQK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 304 ~~v~~v~~~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
..|.+++-.+ ..++|.+.+.+|.||+|||....
T Consensus 90 EtVskv~~sskpF~l~td~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 90 ETVSKVDLSSKPFKLWTDARPVTADAVILATGASAK 125 (322)
T ss_pred eehhhccccCCCeEEEecCCceeeeeEEEeccccee
Confidence 9887776542 33356678999999999998765
No 399
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.70 E-value=0.0061 Score=57.65 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=29.0
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.|||||+|.|||+|+..+-..+-.|+|+|++..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s 43 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGS 43 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCC
Confidence 599999999999999999887767999997643
No 400
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.69 E-value=0.0016 Score=68.34 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=30.6
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||+|.|||+||..+++ |.+|+|||+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4699999999999999999976 899999998754
No 401
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.67 E-value=0.0014 Score=69.80 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~ 96 (499)
..||||||||.|||+||..+++. |.+|+|||+...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 36899999999999999999876 589999998753
No 402
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.67 E-value=0.0019 Score=66.33 Aligned_cols=55 Identities=20% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccc--cccCCCCCCC-CchHHHHHHHHHHHHHHHHHHH
Q 010844 348 PGGRIGIDEWLRVPSVQDVFAVGDCSG--YLESTGKTVL-PALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~--~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
-.|.|.||...|+ ..|++||+|.|+. +. |...+ ......+.--|+.||++++..+
T Consensus 330 t~GGi~vd~~~~t-~i~gLYAaGE~a~~g~h---G~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 330 FMGGIKVDLNSKT-SMKNLYAFGEVSCTGVH---GANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred ecCCEEECCCccc-cCCCeEecccccccCCC---ccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 3577999999997 8999999999973 22 21111 2334567778899998887654
No 403
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.65 E-value=0.0014 Score=70.63 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||||.|||.||..+++.|.+|+|||+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 46899999999999999999999999999998643
No 404
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.0013 Score=70.14 Aligned_cols=34 Identities=35% Similarity=0.406 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCC---CeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSL---YDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g---~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++.| .+|+|||+..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 368999999999999999999987 8999999875
No 405
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.63 E-value=0.028 Score=57.37 Aligned_cols=91 Identities=24% Similarity=0.281 Sum_probs=61.0
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcC-----C--------C---------------
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EIL-----S--------S--------------- 281 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l-----~--------~--------------- 281 (499)
++|+|||+|++|+-.|..|.+.+ .+++++++. .+- . .
T Consensus 7 ~~vaIIGAG~sGL~~ar~l~~~g--------------~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~ 72 (448)
T KOG1399|consen 7 KDVAVIGAGPAGLAAARELLREG--------------HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMG 72 (448)
T ss_pred CceEEECcchHHHHHHHHHHHCC--------------CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhc
Confidence 58999999999999999998865 566666554 221 0 0
Q ss_pred ---C-----------C-HHHHHHHHHHHHhCCCE--EEeC-ceEEEeC----C-eEEECCC----cEEeeeEEEEcCCCC
Q 010844 282 ---F-----------D-DRLRHYATTQLSKSGVR--LVRG-IVKDVDS----Q-KLILNDG----TEVPYGLLVWSTGVG 334 (499)
Q Consensus 282 ---~-----------~-~~~~~~~~~~l~~~gV~--v~~~-~v~~v~~----~-~v~~~~g----~~i~~D~vi~a~G~~ 334 (499)
+ + .++.+++....+.-++. +..+ ++.+++. . .|.+.++ ++.-+|.|++|+|.-
T Consensus 73 ~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 73 YSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred CCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 0 1 15677777777777763 3344 4555543 2 3555443 367799999999988
Q ss_pred c
Q 010844 335 P 335 (499)
Q Consensus 335 p 335 (499)
.
T Consensus 153 ~ 153 (448)
T KOG1399|consen 153 V 153 (448)
T ss_pred C
Confidence 4
No 406
>PRK08275 putative oxidoreductase; Provisional
Probab=96.63 E-value=0.0015 Score=69.42 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=38.9
Q ss_pred CceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 350 GRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 350 G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
|.|.||..++| +.|++||+|||+.. + ......|.-.|+.++.++...++
T Consensus 357 Ggi~~d~~~~t-~i~gl~a~Ge~~~~----~----~~~~~~~~~~G~~a~~~~~~~~~ 405 (554)
T PRK08275 357 SGVWVNEKAET-TVPGLYAAGDMASV----P----HNYMLGAFTYGWFAGENAAEYVA 405 (554)
T ss_pred CcEEECCCCcc-CCCCEEECcccCCc----h----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999 99999999999742 1 24455688889999998877664
No 407
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.63 E-value=0.0031 Score=63.98 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=32.9
Q ss_pred HHHHHHHHh-CCCEEEeCceEEEeC------CeEEECCCcEEeeeEEEEcCCC
Q 010844 288 HYATTQLSK-SGVRLVRGIVKDVDS------QKLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 288 ~~~~~~l~~-~gV~v~~~~v~~v~~------~~v~~~~g~~i~~D~vi~a~G~ 333 (499)
+.+++.++. .++.++.+.|.++.- .+|++.+|..+.|+.||++||.
T Consensus 104 ~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 104 RAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred HHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 344444543 478888775554421 3688999999999999999997
No 408
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.62 E-value=0.018 Score=59.33 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCC---CEEEeC-ceEEEeC---------C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSG---VRLVRG-IVKDVDS---------Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~g---V~v~~~-~v~~v~~---------~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+.+ |+++.+ ++.+++. + .|++.+|+++.+|+||-|-|....
T Consensus 119 l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 119 IQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 4445556666654 999988 8888851 2 467788999999999999999875
No 409
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.61 E-value=0.017 Score=58.72 Aligned_cols=51 Identities=18% Similarity=0.395 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEeC-----C--eEEE--CC-----C--cEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSGVRLVRGIVKDVDS-----Q--KLIL--ND-----G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~~-----~--~v~~--~~-----g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+...+.|++++.+++.++.. + .|++ .+ | .++.+|+||-|.|..+.
T Consensus 95 ~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 95 LDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSR 161 (398)
T ss_pred HHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchH
Confidence 33445556677899998776655521 1 3433 11 3 47999999999998774
No 410
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.61 E-value=0.021 Score=57.97 Aligned_cols=50 Identities=8% Similarity=0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEeC-C----eEEE-CCCc--EEeeeEEEEcCCCCcc
Q 010844 287 RHYATTQLSKSGVRLVRG-IVKDVDS-Q----KLIL-NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~-~v~~v~~-~----~v~~-~~g~--~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+...+.|++++.+ ++.+++. + .|.+ .+|+ ++.+|+||-|-|....
T Consensus 106 ~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 106 TRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 344445556779999988 7777754 2 4566 4664 6899999999998875
No 411
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.61 E-value=0.0019 Score=68.57 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|||||+|.+|+++|..+++.|.+|+|||+.+.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 57899999999999999999999999999998754
No 412
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.60 E-value=0.016 Score=61.50 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhC-CCEEEeC-ceEEEeC--CeE--EE--CCCc-EEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKS-GVRLVRG-IVKDVDS--QKL--IL--NDGT-EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~-gV~v~~~-~v~~v~~--~~v--~~--~~g~-~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+. +++++.+ ++.+++. +++ .+ .+++ ++.+|+||.|.|..+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 444555666654 7999988 8888864 333 33 2454 6999999999998875
No 413
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.60 E-value=0.0058 Score=64.19 Aligned_cols=94 Identities=24% Similarity=0.374 Sum_probs=70.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC------c-C-CCCC-----HHHHHHHHHHHHhCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE------I-L-SSFD-----DRLRHYATTQLSKSG 298 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~------~-l-~~~~-----~~~~~~~~~~l~~~g 298 (499)
+++|||.|..|.-+..++.+... ...+||++-..+ + | +.++ +++.-.-.+..+++|
T Consensus 5 klvvvGnGmag~r~iEell~~~~-----------~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~ 73 (793)
T COG1251 5 KLVIIGNGMAGHRTIEELLESAP-----------DLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENG 73 (793)
T ss_pred eEEEEecccchhhHHHHHHhcCc-----------ccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcC
Confidence 89999999999999999887431 226788775431 1 1 1111 233334456788999
Q ss_pred CEEEeC-ceEEEeCC--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 299 VRLVRG-IVKDVDSQ--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 299 V~v~~~-~v~~v~~~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
|+++++ ++..++.+ .|+.++|.++.+|-+|+|||..|.
T Consensus 74 i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 74 ITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred cEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCcccc
Confidence 999999 89999875 677788999999999999999986
No 414
>PRK12839 hypothetical protein; Provisional
Probab=96.59 E-value=0.0026 Score=67.63 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
...+|+|||+|.+|+++|..+++.|.+|+|||+....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 3579999999999999999999999999999987543
No 415
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.58 E-value=0.0018 Score=68.62 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=40.1
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.|+ ..|++||+|+|+.-.+ |.... ......|.-.|++|++++...+.
T Consensus 348 ~GGi~vd~~~~t-~IpGLyAaGE~~gg~h--G~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~ 404 (543)
T PRK06263 348 MGGIRINEDCET-NIPGLFACGEVAGGVH--GANRLGGNALADTQVFGAIAGKSAAKNAE 404 (543)
T ss_pred cCCEEECCCCcc-cCCCeEeccccccCCC--CCCccchhhhhhhHHHHHHHHHHHHHHhh
Confidence 477999999998 8999999999874111 21111 22345678889999999877654
No 416
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.57 E-value=0.0019 Score=67.57 Aligned_cols=33 Identities=30% Similarity=0.285 Sum_probs=30.2
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.||||||||.|||+||..+++.|. |+|||+.+.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 589999999999999999999997 999998843
No 417
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=96.57 E-value=0.016 Score=59.30 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=29.9
Q ss_pred CCEEEeC-ceEEEeC--C--eEEECCCcEEeeeEEEEcCCCCcc
Q 010844 298 GVRLVRG-IVKDVDS--Q--KLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 298 gV~v~~~-~v~~v~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
++.++.+ +|.+++. + .+.+++|+++.+|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 3456667 7877753 2 366788999999999999998864
No 418
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.56 E-value=0.0029 Score=65.17 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
...||+|||||+.|+.+|+.++.+|++|+|+|+.+.-..
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsG 49 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASG 49 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCc
Confidence 568999999999999999999999999999999986433
No 419
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0033 Score=59.65 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEECCCc--EEeeeEEEEcCCCCcc-hhcc----------cCC
Q 010844 283 DDRLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLILNDGT--EVPYGLLVWSTGVGPS-TLVK----------SLD 343 (499)
Q Consensus 283 ~~~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~~~g~--~i~~D~vi~a~G~~p~-~~~~----------~~~ 343 (499)
+-++.+.+...++..|.-++++ +|.+.+- + .|.+.+.. .+.+|..|+|+|.--. -+.. .++
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld 336 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD 336 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc
Confidence 3467888999999999999998 7776643 2 45556654 4569999999986432 1111 111
Q ss_pred CCCC-------------C----CCceeeCCCCCCC----CCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHH
Q 010844 344 LPKS-------------P----GGRIGIDEWLRVP----SVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLL 402 (499)
Q Consensus 344 l~~~-------------~----~G~i~vd~~l~~~----~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i 402 (499)
+... + .=.+.+|+++|.. .+.|+||+|.+..-.++.-. .--..+|+..|-.+|+.|
T Consensus 337 i~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~e---gcGsGVaivta~~aa~qi 413 (421)
T COG3075 337 ILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAE---GCGSGVAIVTALHAAEQI 413 (421)
T ss_pred cccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHh---cCCcchHHHHHHHHHHHH
Confidence 1100 0 0126778887762 26799999998852221100 000234666677777776
Q ss_pred HHHH
Q 010844 403 NRIG 406 (499)
Q Consensus 403 ~~~~ 406 (499)
....
T Consensus 414 ~~~~ 417 (421)
T COG3075 414 AERA 417 (421)
T ss_pred HHHh
Confidence 6543
No 420
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0047 Score=58.95 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=70.4
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHH--HHHhcCCCCCceEEEEEeCC-CcCCCCCHHHHHHHHHHHHhCCCEEEeC-c
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRD--VRQRYSHVKDYIHVTLIEAN-EILSSFDDRLRHYATTQLSKSGVRLVRG-I 305 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~--~~~~~~~~~~~~~Vtlv~~~-~~l~~~~~~~~~~~~~~l~~~gV~v~~~-~ 305 (499)
.-.|+||||||.|...|...++.+-+. ..++|...- .+..-|+.- .....-++++...++++.++..|+++.. +
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQv--ldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQV--LDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCee--ccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhh
Confidence 348999999999999888888765221 122222100 000001110 1122347899999999999999999977 6
Q ss_pred eEEEeC----C---eEEECCCcEEeeeEEEEcCCCCc
Q 010844 306 VKDVDS----Q---KLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 306 v~~v~~----~---~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
.+.+++ + .|++.+|-.+.+..+|++||.+=
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 666554 2 68899999999999999999763
No 421
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.53 E-value=0.019 Score=58.70 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeC--Ce--EEECCC-----cEEeeeEEEEcCCCCcchhcccC
Q 010844 288 HYATTQLSKSGVRLVRG-IVKDVDS--QK--LILNDG-----TEVPYGLLVWSTGVGPSTLVKSL 342 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~~--~~--v~~~~g-----~~i~~D~vi~a~G~~p~~~~~~~ 342 (499)
..+.+.+++.|++++.+ +|.+++. +. +.+.++ .++.+|.||+|+|.....+...+
T Consensus 201 ~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~ 265 (410)
T PRK12409 201 TGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAML 265 (410)
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHh
Confidence 33445566889999988 7888753 33 333332 37999999999999876554433
No 422
>PLN02815 L-aspartate oxidase
Probab=96.53 E-value=0.0026 Score=67.76 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..||||||+|.|||+||..+++.| +|+|||+.+.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 469999999999999999999999 9999998764
No 423
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.52 E-value=0.025 Score=58.29 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhCCCEEEeCceEEEeC-----C--eEEECC-------C--cEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSGVRLVRGIVKDVDS-----Q--KLILND-------G--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~gV~v~~~~v~~v~~-----~--~v~~~~-------g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+...+.|++++.+.+.+++. + .|.+.+ | .++.+|+||-|.|....
T Consensus 134 ~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~ 200 (450)
T PLN00093 134 LDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSR 200 (450)
T ss_pred HHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchH
Confidence 33445555677899998776666641 2 244422 3 47999999999998663
No 424
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.003 Score=59.85 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
...|-|||||.||-.||+++++.|+.|.|+|-++
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 4579999999999999999999999999999764
No 425
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.49 E-value=0.0017 Score=69.45 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCC-chHHHHHHHHHHHHHHHHHHH
Q 010844 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLP-ALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p-~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.|.|.+|...+| +.|++||+|+|+.-.+ |...+. .....+.-.|+.+|+++....
T Consensus 370 ~gG~~~d~~~~t-~i~gL~a~Ge~~~~~h--g~nrl~~~sl~~~~v~g~~Ag~~aa~~~ 425 (603)
T TIGR01811 370 MGGLWVDYDQMT-NIPGLFAAGECDFSQH--GANRLGANSLLSAIADGYFALPFTIPNY 425 (603)
T ss_pred CCCeeECCCCcc-cCCCEEECcccccCcC--CCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999998 8999999999974221 222211 344567778888888877654
No 426
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.48 E-value=0.0025 Score=65.44 Aligned_cols=98 Identities=29% Similarity=0.396 Sum_probs=25.9
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCC----------C-------------------
Q 010844 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSF----------D------------------- 283 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~----------~------------------- 283 (499)
|+|||||+.|+-.|..+++.+ .+|.|+++...+... .
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G--------------~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~ 67 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAG--------------AKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRL 67 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTT--------------S-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST
T ss_pred EEEECccHHHHHHHHHHHHCC--------------CEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHH
Confidence 899999999999999999987 899999886433210 0
Q ss_pred ----------------------HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECC---CcEEeeeEEEEcCC
Q 010844 284 ----------------------DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILND---GTEVPYGLLVWSTG 332 (499)
Q Consensus 284 ----------------------~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~---g~~i~~D~vi~a~G 332 (499)
......+.+.+++.||+++.+ .|.++..+ +|++.+ ..++.++.+|=|||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 68 RARGGYPQEDRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 001112334456778888888 67666433 455554 46799999999999
Q ss_pred CCcchhcccCCCCC
Q 010844 333 VGPSTLVKSLDLPK 346 (499)
Q Consensus 333 ~~p~~~~~~~~l~~ 346 (499)
.- .+....|.+.
T Consensus 148 ~g--~l~~~aG~~~ 159 (428)
T PF12831_consen 148 DG--DLAALAGAPY 159 (428)
T ss_dssp --------------
T ss_pred cc--cccccccccc
Confidence 42 3444445443
No 427
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.48 E-value=0.0038 Score=66.63 Aligned_cols=38 Identities=24% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
...+|||||+|.+|+++|..+++.|++|+|||+++...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~g 48 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFG 48 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 35799999999999999999999999999999986543
No 428
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.47 E-value=0.004 Score=66.48 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
..+|||||+|.+|+++|..+++.|.+|+|||+.+..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~ 51 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYV 51 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999999999999999987643
No 429
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.45 E-value=0.003 Score=62.06 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCC--eEEEEcCCCCccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLY--DVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~--~V~lie~~~~~~~ 99 (499)
..++|+|+|||.+||++|++|++.+. .|+|+|..++...
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 34789999999999999999999765 4777999887543
No 430
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.43 E-value=0.0035 Score=72.16 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=34.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCc
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHM 97 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~ 97 (499)
+...||||||+|.||++||..+++.|.+|+|+|+.+..
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKL 444 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 34579999999999999999999999999999998654
No 431
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.43 E-value=0.079 Score=47.92 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=55.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-cCC-------CCC--------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-ILS-------SFD-------------------- 283 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~l~-------~~~-------------------- 283 (499)
.|+|||+|++|+-+|..|++.+ .+|.++++.. +-. .|+
T Consensus 19 DV~IVGaGpaGl~aA~~La~~g--------------~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~ 84 (230)
T PF01946_consen 19 DVAIVGAGPAGLTAAYYLAKAG--------------LKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYE 84 (230)
T ss_dssp SEEEE--SHHHHHHHHHHHHHT--------------S-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---E
T ss_pred CEEEECCChhHHHHHHHHHHCC--------------CeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeE
Confidence 8999999999999999999887 8999999762 211 111
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeC-ceEEE--eC-C---eEEEC-----------CCcEEeeeEEEEcCCCC
Q 010844 284 -----------DRLRHYATTQLSKSGVRLVRG-IVKDV--DS-Q---KLILN-----------DGTEVPYGLLVWSTGVG 334 (499)
Q Consensus 284 -----------~~~~~~~~~~l~~~gV~v~~~-~v~~v--~~-~---~v~~~-----------~g~~i~~D~vi~a~G~~ 334 (499)
..+...+....-+.|++++.. .|+++ .+ + +|.+. |--.+.+..||=|||..
T Consensus 85 ~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHd 164 (230)
T PF01946_consen 85 EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHD 164 (230)
T ss_dssp E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SS
T ss_pred EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCc
Confidence 112222223333588998887 66665 22 2 33332 22378999999999988
Q ss_pred cc
Q 010844 335 PS 336 (499)
Q Consensus 335 p~ 336 (499)
.+
T Consensus 165 a~ 166 (230)
T PF01946_consen 165 AE 166 (230)
T ss_dssp SS
T ss_pred hH
Confidence 75
No 432
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.42 E-value=0.011 Score=64.35 Aligned_cols=92 Identities=21% Similarity=0.307 Sum_probs=68.3
Q ss_pred HHhccccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-Cc---C----C--CCCHHHHHHHHHHHH
Q 010844 226 EKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EI---L----S--SFDDRLRHYATTQLS 295 (499)
Q Consensus 226 ~~~~~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~---l----~--~~~~~~~~~~~~~l~ 295 (499)
..+.+++|+|||.|+.|+-+|..|.+.+ ..|++.+|. ++ | | .++..+.+.-.+.|.
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~g--------------h~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~ 1846 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAG--------------HTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLE 1846 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcC--------------cEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHH
Confidence 3467789999999999999999999887 789999986 42 2 2 245667777778899
Q ss_pred hCCCEEEeC-ceEEEeCCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 296 KSGVRLVRG-IVKDVDSQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 296 ~~gV~v~~~-~v~~v~~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
+.||+++++ +|-.- +.+ |+-.-+.|.||+|+|..-+
T Consensus 1847 ~egi~f~tn~eigk~----vs~-d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1847 QEGIRFVTNTEIGKH----VSL-DELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred hhCceEEeecccccc----ccH-HHHhhccCeEEEEeCCCCC
Confidence 999999988 44221 111 2223457899999997643
No 433
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.40 E-value=0.028 Score=57.08 Aligned_cols=91 Identities=21% Similarity=0.343 Sum_probs=61.6
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC-c----CC--------------CC----------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE-I----LS--------------SF---------- 282 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~-~----l~--------------~~---------- 282 (499)
.|+|||+|++|.-+|..|++.+ .+|.++++.. . .. ..
T Consensus 5 DVvIVGaGPAGs~aA~~la~~G--------------~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~ 70 (396)
T COG0644 5 DVVIVGAGPAGSSAARRLAKAG--------------LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTG 70 (396)
T ss_pred eEEEECCchHHHHHHHHHHHcC--------------CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeee
Confidence 7999999999999999999876 4555555431 1 00 00
Q ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeC-ceEEEe--CCe---EEECCCcEEeeeEEEEcCCC
Q 010844 283 -----------------------DDRLRHYATTQLSKSGVRLVRG-IVKDVD--SQK---LILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 283 -----------------------~~~~~~~~~~~l~~~gV~v~~~-~v~~v~--~~~---v~~~~g~~i~~D~vi~a~G~ 333 (499)
...+.+.+.+..++.|++++.+ ++..+. +++ .+..++.++.++.||.|.|.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~ 150 (396)
T COG0644 71 ARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGV 150 (396)
T ss_pred eEEEecCCceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCc
Confidence 1234445566667889999988 777664 222 22233468999999999997
Q ss_pred Ccc
Q 010844 334 GPS 336 (499)
Q Consensus 334 ~p~ 336 (499)
...
T Consensus 151 ~s~ 153 (396)
T COG0644 151 NSA 153 (396)
T ss_pred chH
Confidence 653
No 434
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.38 E-value=0.004 Score=66.05 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFT 100 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~ 100 (499)
...+|||||+| +|++||..+++.|.+|+|||+.+.+...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGS 53 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCc
Confidence 36899999999 8999999999999999999998765443
No 435
>PLN02976 amine oxidase
Probab=96.37 E-value=0.0034 Score=71.18 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=34.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCccc
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVF 99 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~ 99 (499)
..++|+|||||++|+++|..|.+.|++|+|||+++....
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG 730 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG 730 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence 357899999999999999999999999999999876543
No 436
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.36 E-value=0.0031 Score=65.95 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=33.3
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcc
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMV 98 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~ 98 (499)
++|+|||+|++|+.+|+.|++.|++|+|||+.....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 489999999999999999999999999999987654
No 437
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.34 E-value=0.0026 Score=67.77 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=40.2
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.+|...|| +.|++||+|+|+.. ...|...+ ......|.-.|+.+++++...+.
T Consensus 357 ~GGi~~d~~~~t-~i~GLyAaGe~a~~-G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~ 414 (580)
T TIGR01176 357 MGGIETDINCET-RIKGLFAVGECASV-GLHGANRLGSNSLAELVVFGRRAGEAAAERAA 414 (580)
T ss_pred CCCeeECcCccc-ccCCeEeeeccccc-CcCCCccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 467999999998 89999999999742 11122211 13455678889999998877653
No 438
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.33 E-value=0.032 Score=56.58 Aligned_cols=50 Identities=10% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCEEEeC-ceEEEe---C--CeEEEC-CCc--EEeeeEEEEcCCCCcc
Q 010844 287 RHYATTQLSKSGVRLVRG-IVKDVD---S--QKLILN-DGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~~gV~v~~~-~v~~v~---~--~~v~~~-~g~--~i~~D~vi~a~G~~p~ 336 (499)
...+.+.+.+.|++++.+ ++.++. + ..|++. +|+ ++.+|+||-|-|....
T Consensus 106 ~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~ 164 (390)
T TIGR02360 106 TRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV 164 (390)
T ss_pred HHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh
Confidence 344555566678888877 555552 2 267775 775 6899999999998875
No 439
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.32 E-value=0.0028 Score=67.55 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 348 PGGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 348 ~~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
..|.|.||.+.|+ +.|++||+|+|+... ..|...+ ......|.-.|+++++++...++
T Consensus 357 t~GGi~vd~~~~t-~i~GLyAaGe~~~~g-~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~ 415 (582)
T PRK09231 357 TMGGIETDQNCET-RIKGLFAVGECSSVG-LHGANRLGSNSLAELVVFGRVAGEQAAERAA 415 (582)
T ss_pred eCCCEEECCCCcc-ccCCEEecccccccc-cCCCCCcchhHHHHHHHHHHHHHHHHHHhhh
Confidence 3577999999998 999999999997421 1122111 23455677889999999887764
No 440
>PRK02106 choline dehydrogenase; Validated
Probab=96.29 E-value=0.0043 Score=66.05 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHhccC-CCCeEEEEcCCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDT-SLYDVVCVSPRNH 96 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~-~g~~V~lie~~~~ 96 (499)
.+|+||||||.||+.+|.+|++ .|++|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4799999999999999999999 7999999999864
No 441
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.28 E-value=0.026 Score=61.39 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=29.2
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
.+|+|||||.+|+-+|..|++.+ .+|+++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G--------------~~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRG--------------WQVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--------------CeEEEEecC
Confidence 38999999999999999999877 789999976
No 442
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.26 E-value=0.0034 Score=70.51 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=40.0
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.+| +.|++||+|||+... .+....|.-.|+.++.++..++.
T Consensus 361 ~GGi~vd~~~~T-~v~GLfAaGE~a~~~--------~nsl~~a~v~G~~Ag~~a~~~~~ 410 (897)
T PRK13800 361 ASGVWVDEHART-TVPGLYAAGDLACVP--------HNYMIGAFVFGDLAGAHAAGTLA 410 (897)
T ss_pred cceEEecCCCcc-cCCCeEechhccCcc--------hhhhhhHHHhHHHHHHHHHHHHh
Confidence 478999999999 999999999998521 34455678889999998877654
No 443
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.25 E-value=0.027 Score=59.70 Aligned_cols=32 Identities=22% Similarity=0.487 Sum_probs=28.8
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.|+|||||.+|+-+|.+|+..+ .+|+++++.+
T Consensus 8 DVvIIGGGi~G~~iA~~La~rG--------------~~V~LlEk~d 39 (546)
T PRK11101 8 DVIIIGGGATGAGIARDCALRG--------------LRCILVERHD 39 (546)
T ss_pred cEEEECcCHHHHHHHHHHHHcC--------------CeEEEEECCC
Confidence 7999999999999999999877 7899988754
No 444
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.24 E-value=0.039 Score=54.22 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
++|.|||.|+.||..|.-|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 445
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.24 E-value=0.0036 Score=66.88 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|||||||.|||+||..+++. .+|+|+|+..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 36899999999999999999876 8999999874
No 446
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.24 E-value=0.0048 Score=65.25 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=39.2
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHH
Q 010844 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIG 406 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~ 406 (499)
.|.|.||.+.|| +.|++||+|+|+.. ...|...+ ......|.-.|+.+++++....
T Consensus 353 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~ 409 (536)
T PRK09077 353 CGGVMVDLHGRT-DLDGLYAIGEVSYT-GLHGANRMASNSLLECLVYGRSAAEDILSRL 409 (536)
T ss_pred cCCeeECCCCcc-ccCCEEeccccccc-ccCCCccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 477999999998 89999999999731 01122111 2345567778999999887654
No 447
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.22 E-value=0.004 Score=65.47 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
.+.+|||||||.|||.||..+++.|.+|+|+|+.+.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 457999999999999999999999999999997643
No 448
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.17 E-value=0.021 Score=53.32 Aligned_cols=47 Identities=30% Similarity=0.335 Sum_probs=31.8
Q ss_pred HhCCCEEEeCceEEEeCC--e---EEEC---C-CcEEeeeEEEEcCCCCcchhccc
Q 010844 295 SKSGVRLVRGIVKDVDSQ--K---LILN---D-GTEVPYGLLVWSTGVGPSTLVKS 341 (499)
Q Consensus 295 ~~~gV~v~~~~v~~v~~~--~---v~~~---~-g~~i~~D~vi~a~G~~p~~~~~~ 341 (499)
++.||+++.++|.++.++ . +... + ....+++.+|++.|-+...++..
T Consensus 159 k~~~V~lv~Gkv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~ 214 (380)
T KOG2852|consen 159 KRGGVKLVFGKVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPF 214 (380)
T ss_pred hhcCeEEEEeeeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhccc
Confidence 345699999998888532 1 2222 1 34678999999999887654433
No 449
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.15 E-value=0.21 Score=50.37 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhC-CCEEEeC-ceEEEeCC-----eEEEC-----CCcEEeeeEEEEcCCCCcchhcccCCCCCCC-CCc
Q 010844 285 RLRHYATTQLSKS-GVRLVRG-IVKDVDSQ-----KLILN-----DGTEVPYGLLVWSTGVGPSTLVKSLDLPKSP-GGR 351 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~-~v~~v~~~-----~v~~~-----~g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~-~G~ 351 (499)
.+.+.+.+.+.+. |++++.+ +|++++.. .|.+. +..++.++.|++.+|-..-++++++|++... -|.
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gygg 261 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGG 261 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCC
Confidence 5666677777777 9999999 88888653 34442 2357999999999999888899998875322 233
Q ss_pred eeeC-CCCCC
Q 010844 352 IGID-EWLRV 360 (499)
Q Consensus 352 i~vd-~~l~~ 360 (499)
..|. .+|++
T Consensus 262 fPVsG~fl~~ 271 (488)
T PF06039_consen 262 FPVSGQFLRC 271 (488)
T ss_pred CcccceEEec
Confidence 3343 44555
No 450
>PRK07538 hypothetical protein; Provisional
Probab=96.15 E-value=0.041 Score=56.23 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHHHHHh-CC-CEEEeC-ceEEEeC--C--eEEECCC-----cEEeeeEEEEcCCCCcc
Q 010844 287 RHYATTQLSK-SG-VRLVRG-IVKDVDS--Q--KLILNDG-----TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 287 ~~~~~~~l~~-~g-V~v~~~-~v~~v~~--~--~v~~~~g-----~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+ .| ++++.+ ++++++. + .+.+.++ +++.+|+||-|-|....
T Consensus 105 ~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 105 QMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred HHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH
Confidence 3344444444 36 468888 7888753 3 2444443 48999999999998764
No 451
>PRK06126 hypothetical protein; Provisional
Probab=96.12 E-value=0.039 Score=58.67 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=35.3
Q ss_pred HHHHHHHHHHh-CCCEEEeC-ceEEEeCC--e--EEE---CCCc--EEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSK-SGVRLVRG-IVKDVDSQ--K--LIL---NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~-~gV~v~~~-~v~~v~~~--~--v~~---~~g~--~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+++ .||+++.+ ++.+++.+ + +++ .+|+ ++.+|+||.|.|....
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence 34445555554 48999999 88888643 3 333 2353 6899999999998764
No 452
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.10 E-value=0.0065 Score=63.86 Aligned_cols=57 Identities=18% Similarity=0.083 Sum_probs=39.0
Q ss_pred CCceeeCCCCCCCCCCCeEEeccccccccCCCCCCC-CchHHHHHHHHHHHHHHHHHHHH
Q 010844 349 GGRIGIDEWLRVPSVQDVFAVGDCSGYLESTGKTVL-PALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 349 ~G~i~vd~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~-p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
.|.|.||.+.|+ +.|++||+|+|+.. ...|...+ ......|.-.|+.+++++.....
T Consensus 341 ~GGi~vd~~~~t-~I~GLyAaGE~a~~-G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~ 398 (513)
T PRK07512 341 MGGIAVDADGRS-SLPGLWAAGEVAST-GLHGANRLASNSLLEAVVFAARAAEDIAGTPA 398 (513)
T ss_pred cCCEEECCCCcc-ccCCEEeccccccc-CCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477999999998 89999999999731 01121111 23345567788999998876543
No 453
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.08 E-value=0.026 Score=58.62 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=54.9
Q ss_pred HHHHhcCCCC-CceEEEEEeCCCcCCCCCH-HHHHHHHHHHHhCCCEEEeC-ceEEEeC-----CeEEECCCcEEeeeEE
Q 010844 256 DVRQRYSHVK-DYIHVTLIEANEILSSFDD-RLRHYATTQLSKSGVRLVRG-IVKDVDS-----QKLILNDGTEVPYGLL 327 (499)
Q Consensus 256 ~~~~~~~~~~-~~~~Vtlv~~~~~l~~~~~-~~~~~~~~~l~~~gV~v~~~-~v~~v~~-----~~v~~~~g~~i~~D~v 327 (499)
+..+.||.+. ++..-.|..+.+- .++| .+.+.+....++.|+.|+.+ .|+++.. .+|.+.-| .|++..+
T Consensus 159 e~~~~~pLLn~d~v~g~Ly~P~DG--~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~ 235 (856)
T KOG2844|consen 159 ETQELFPLLNVDDVYGGLYSPGDG--VMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECV 235 (856)
T ss_pred HHHHhCcccchhHheeeeecCCCc--ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceE
Confidence 3345566654 3455566666531 2333 56667777788899999988 8888743 25776666 5899999
Q ss_pred EEcCCCCcchh
Q 010844 328 VWSTGVGPSTL 338 (499)
Q Consensus 328 i~a~G~~p~~~ 338 (499)
|-|+|++....
T Consensus 236 VNaaGvWAr~V 246 (856)
T KOG2844|consen 236 VNAAGVWAREV 246 (856)
T ss_pred EechhHHHHHh
Confidence 99999998654
No 454
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.014 Score=58.15 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=21.0
Q ss_pred cEEEeCcChHHHHHHHHHHHHH
Q 010844 232 HCVVVGGGPTGVEFSGELSDFI 253 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~ 253 (499)
.|+|||||..|+|.|.+.++.|
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~G 51 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLG 51 (679)
T ss_pred cEEEECCCccchHHHHHHHhcC
Confidence 7999999999999999999987
No 455
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.95 E-value=0.0083 Score=48.15 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||..|..-+..|.+.|.+|+||.++.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 45789999999999999999999999999998863
No 456
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.84 E-value=0.052 Score=57.01 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCEEEeC-ceEEEeC--C--eEEECC---Cc--EEeeeEEEEcCCCCcchhcc
Q 010844 289 YATTQLSKSGVRLVRG-IVKDVDS--Q--KLILND---GT--EVPYGLLVWSTGVGPSTLVK 340 (499)
Q Consensus 289 ~~~~~l~~~gV~v~~~-~v~~v~~--~--~v~~~~---g~--~i~~D~vi~a~G~~p~~~~~ 340 (499)
.+.+...+.|++++.+ +|.++.. + ++.+.+ |+ ++.++.||.|+|.+.+.+..
T Consensus 160 ~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~ 221 (508)
T PRK12266 160 LNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLD 221 (508)
T ss_pred HHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHh
Confidence 3344566789999988 8888753 2 244443 43 68999999999998876654
No 457
>PLN02985 squalene monooxygenase
Probab=95.83 E-value=0.071 Score=55.98 Aligned_cols=52 Identities=25% Similarity=0.254 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhC-CCEEEeCceEEEe-CC----eEEE--CCCcE--EeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKS-GVRLVRGIVKDVD-SQ----KLIL--NDGTE--VPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~-gV~v~~~~v~~v~-~~----~v~~--~~g~~--i~~D~vi~a~G~~p~ 336 (499)
++.+.+.+.+.+. ||+++.+++.++. ++ +|++ ++|++ +.+|+||.|.|....
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~ 209 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN 209 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH
Confidence 3455555555554 7888877655543 22 3454 35653 568999999998875
No 458
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.071 Score=53.81 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=19.5
Q ss_pred cEEEeCcChHHHHHHHHHHHH
Q 010844 232 HCVVVGGGPTGVEFSGELSDF 252 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~ 252 (499)
+|+|||||++|+.+|.+|.+.
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~ 23 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKS 23 (474)
T ss_pred eEEEECCchHHHHHHHHHHhC
Confidence 899999999999999999864
No 459
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.80 E-value=0.0091 Score=63.21 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHhccCCC-CeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSL-YDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g-~~V~lie~~~~ 96 (499)
|+||||||.||+.+|.+|++.+ ++|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999987 79999999864
No 460
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.77 E-value=0.013 Score=55.87 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.9
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
..+|+|||+|.|||-||.+|+..|.+|+|+|+++
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEcccc
Confidence 4789999999999999999999999999999874
No 461
>PRK11445 putative oxidoreductase; Provisional
Probab=95.74 E-value=0.11 Score=51.76 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=30.6
Q ss_pred HhCCCEEEeC-ceEEEeC--Ce--EEE-CCCc--EEeeeEEEEcCCCCcc
Q 010844 295 SKSGVRLVRG-IVKDVDS--QK--LIL-NDGT--EVPYGLLVWSTGVGPS 336 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~--~~--v~~-~~g~--~i~~D~vi~a~G~~p~ 336 (499)
.+.||+++.+ .+.+++. ++ +.+ ++|+ ++.+|.||.|.|....
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 3568999988 7777743 33 343 4564 6899999999998764
No 462
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.65 E-value=0.067 Score=57.38 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.3
Q ss_pred ccccEEEeCcChHHHHHHHHHHHHH
Q 010844 229 RLLHCVVVGGGPTGVEFSGELSDFI 253 (499)
Q Consensus 229 ~~~~vvVvGgG~~gve~A~~l~~~~ 253 (499)
+..+|+|||||+.|+-+|..|++.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~G 104 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKG 104 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcC
Confidence 4468999999999999999999876
No 463
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=95.65 E-value=0.032 Score=61.59 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.4
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||+.|+-+|..|++.+ ++.+|+++++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~------------~G~~V~vlEr~ 34 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLD------------PAHEVTVVERN 34 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhC------------CCCeEEEEecC
Confidence 7999999999999999998762 11677777765
No 464
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.58 E-value=0.016 Score=52.75 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|||||..|..-+..|.+.|.+|+||+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34689999999999999999999999999999864
No 465
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.52 E-value=0.017 Score=61.02 Aligned_cols=37 Identities=22% Similarity=0.283 Sum_probs=33.6
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..++|+||||+|.+|..+|..|+..|.+|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 3468999999999999999999988999999999853
No 466
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.49 E-value=0.019 Score=49.95 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
-+.++|+|||||..|..-|..|.+.|++|+||+++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 34579999999999999999999999999999754
No 467
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.48 E-value=0.11 Score=54.57 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhCCCEEEeC-ceEEEeC--C---eEEE--CCC--cEEeeeEEEEcCC-CCcc
Q 010844 285 RLRHYATTQLSKSGVRLVRG-IVKDVDS--Q---KLIL--NDG--TEVPYGLLVWSTG-VGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~-~v~~v~~--~---~v~~--~~g--~~i~~D~vi~a~G-~~p~ 336 (499)
.+.+.+.+.+++.||+++.+ .++++.. + +|.+ .++ .++.+|.||+|+| +..|
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 34555666677889999988 7777753 2 2444 333 3688999999998 4444
No 468
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.47 E-value=0.11 Score=52.41 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=29.1
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
.+|+|||||.+|+-+|.+|++.+ .+|+++++..
T Consensus 5 ~~vvVIGgGi~Gls~A~~La~~G--------------~~V~vie~~~ 37 (387)
T COG0665 5 MDVVIIGGGIVGLSAAYYLAERG--------------ADVTVLEAGE 37 (387)
T ss_pred ceEEEECCcHHHHHHHHHHHHcC--------------CEEEEEecCc
Confidence 38999999999999999999987 6888888654
No 469
>PLN02785 Protein HOTHEAD
Probab=95.46 E-value=0.017 Score=61.47 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
..+|++|||||.||+.+|..|.+ +.+|+|||+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 45899999999999999999998 689999999864
No 470
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.37 E-value=0.018 Score=56.43 Aligned_cols=48 Identities=38% Similarity=0.645 Sum_probs=39.2
Q ss_pred HhCCCEEEeC-ceEEEeC--CeEEECCCcEEeeeEEEEcCCCCcc--hhcccC
Q 010844 295 SKSGVRLVRG-IVKDVDS--QKLILNDGTEVPYGLLVWSTGVGPS--TLVKSL 342 (499)
Q Consensus 295 ~~~gV~v~~~-~v~~v~~--~~v~~~~g~~i~~D~vi~a~G~~p~--~~~~~~ 342 (499)
...||-+..+ +|..++. ..|+++||.+|.+|-+++|||.+|. +.+++.
T Consensus 268 ~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A 320 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEA 320 (659)
T ss_pred ccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhc
Confidence 3568999999 7888865 4799999999999999999999997 344443
No 471
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.36 E-value=0.0068 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHhccCC--CCeEEEEcCCCCccc
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTS--LYDVVCVSPRNHMVF 99 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~--g~~V~lie~~~~~~~ 99 (499)
..+|||||+|.+||++|+.+.++ +.+|.+||.+-....
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 35899999999999999999854 688999998754433
No 472
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.34 E-value=0.015 Score=50.66 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
||.|||||..|.++|..|+.+|++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999875
No 473
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.22 E-value=0.12 Score=55.75 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCC--CEEEeC-ceEEEeCC-------eEEEC------CC--cEEeeeEEEEcCCCCcc
Q 010844 286 LRHYATTQLSKSG--VRLVRG-IVKDVDSQ-------KLILN------DG--TEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 286 ~~~~~~~~l~~~g--V~v~~~-~v~~v~~~-------~v~~~------~g--~~i~~D~vi~a~G~~p~ 336 (499)
+.+.+.+.+.+.+ |++..+ ++++++.+ .++++ +| +++.+|+||-|-|.+..
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH
Confidence 4555666676766 466777 78877532 24553 35 57999999999998764
No 474
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.18 E-value=0.011 Score=60.76 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=28.3
Q ss_pred EECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 67 VLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 67 IIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
|||+|.||++||..+++.|.+|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999863
No 475
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.11 E-value=0.032 Score=50.88 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=49.7
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||.+|..-+..|.+.+ .+|+++.+. +.+++. +..++.+|+++.+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~g--------------a~VtVvsp~-----~~~~l~----~l~~~~~i~~~~~~~~-- 63 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAG--------------AQLRVIAEE-----LESELT----LLAEQGGITWLARCFD-- 63 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--------------CEEEEEcCC-----CCHHHH----HHHHcCCEEEEeCCCC--
Confidence 359999999999999999998877 899999753 223332 3233345666544211
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCC-cc
Q 010844 310 DSQKLILNDGTEVPYGLLVWSTGVG-PS 336 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 336 (499)
.+..-.+|+||.|||.. .|
T Consensus 64 --------~~dl~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 64 --------ADILEGAFLVIAATDDEELN 83 (205)
T ss_pred --------HHHhCCcEEEEECCCCHHHH
Confidence 01112489999999987 45
No 476
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.07 E-value=0.24 Score=51.54 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCceEEEe--CCe---EEECCCcEEeeeEEEEcCCCCcc
Q 010844 285 RLRHYATTQLSKSGVRLVRGIVKDVD--SQK---LILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 285 ~~~~~~~~~l~~~gV~v~~~~v~~v~--~~~---v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
.+.+.+.+.+++.||+++.+.+..+. ++. +.. +++.+.++.||+|||-.+.
T Consensus 121 ~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 121 HIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 45555566667778888766554443 222 333 5668999999999998765
No 477
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.05 E-value=0.017 Score=54.55 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCEEEeC-ceEEEeCC-------eEEECC--CcEEeeeEEEEcCCCCcchhcccCCCCCCC
Q 010844 288 HYATTQLSKSGVRLVRG-IVKDVDSQ-------KLILND--GTEVPYGLLVWSTGVGPSTLVKSLDLPKSP 348 (499)
Q Consensus 288 ~~~~~~l~~~gV~v~~~-~v~~v~~~-------~v~~~~--g~~i~~D~vi~a~G~~p~~~~~~~~l~~~~ 348 (499)
..+-+.++..|-++.++ +++.+..+ -+++.+ ++++.+..+|-|+|...+......+++.|+
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dP 270 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDP 270 (453)
T ss_pred HHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCC
Confidence 33444578888888888 88777553 133333 578999999999999887666666766654
No 478
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.95 E-value=0.031 Score=50.82 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
..++|+|||||-.|...|..|.+.|.+|+||+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999874
No 479
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.025 Score=52.42 Aligned_cols=34 Identities=15% Similarity=0.397 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++++|||+|..|.+.|..|.+.|++|++||+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4799999999999999999999999999999753
No 480
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=94.82 E-value=0.094 Score=54.27 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=27.1
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCc
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEI 278 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 278 (499)
.|+|||||.+|+-+|..++..| .+|.|+++.++
T Consensus 14 DviVIGGGitG~GiArDaA~RG--------------l~v~LvE~~D~ 46 (532)
T COG0578 14 DVIVIGGGITGAGIARDAAGRG--------------LKVALVEKGDL 46 (532)
T ss_pred CEEEECCchhhHHHHHHHHhCC--------------CeEEEEecCcc
Confidence 7999999999999999999866 66666665543
No 481
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.1 Score=54.00 Aligned_cols=76 Identities=29% Similarity=0.372 Sum_probs=53.5
Q ss_pred ccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEe
Q 010844 231 LHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVD 310 (499)
Q Consensus 231 ~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~ 310 (499)
++|+|+|+|.+|..+|..|+..+ .+|+++++.. .+.+ +...+.|.+.|++++.+....
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G--------------~~V~~~d~~~-----~~~~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLG--------------AKVILTDEKE-----EDQL-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--------------CEEEEEeCCc-----hHHH-HHHHHHHHhcCCEEEeCCcch--
Confidence 58999999999999999999988 8999998752 1222 223345677788877653221
Q ss_pred CCeEEECCCcEEeeeEEEEcCCCCcc
Q 010844 311 SQKLILNDGTEVPYGLLVWSTGVGPS 336 (499)
Q Consensus 311 ~~~v~~~~g~~i~~D~vi~a~G~~p~ 336 (499)
...-.+|+||.++|..++
T Consensus 64 --------~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 64 --------EFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred --------hHhhcCCEEEECCCCCCC
Confidence 001247888888888775
No 482
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.74 E-value=0.023 Score=50.94 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=27.4
Q ss_pred CcEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
++|.|||.|+.||..|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998754
No 483
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=94.71 E-value=0.052 Score=39.75 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=25.5
Q ss_pred EeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCC
Q 010844 235 VVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANE 277 (499)
Q Consensus 235 VvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~ 277 (499)
|||+|.+|+-+|..|++.+ .+|+++|+.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--------------~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--------------YRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--------------SEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCC--------------CcEEEEecCc
Confidence 8999999999999999876 8999999874
No 484
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=94.66 E-value=0.028 Score=55.76 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeC-ceEEEeCC-----eEEECCCcEEeeeEEEEcCCC
Q 010844 284 DRLRHYATTQLSKSGVRLVRG-IVKDVDSQ-----KLILNDGTEVPYGLLVWSTGV 333 (499)
Q Consensus 284 ~~~~~~~~~~l~~~gV~v~~~-~v~~v~~~-----~v~~~~g~~i~~D~vi~a~G~ 333 (499)
..++..+.+.+++.|-+|.+. .|++|--+ +|.++||+++.+..|+--++.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCch
Confidence 367788888999999999998 88887432 799999999999777765543
No 485
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.032 Score=57.88 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|+|||.|.+|+++|+.|.+.|++|+++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 699999999999999999999999999998765
No 486
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.41 E-value=0.039 Score=49.23 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=28.6
Q ss_pred cEEEECCchHHHHHHHhccCCCCeEEEEcCCCC
Q 010844 64 RVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNH 96 (499)
Q Consensus 64 ~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~ 96 (499)
+|.|||+|.-|...|..++..|++|+|+|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999754
No 487
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.026 Score=53.87 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=62.4
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCCCCcccccchhhhhccCCCCCccccchhhhccccccCCCeEEEE----
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRNHMVFTPLLASTCVGTLEFRSVAEPIARIQPAISREPGSYFFL---- 137 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 137 (499)
+-+-+|||||+.+|.||-.|+..|++|||.=|+--+ .|. ..++.+.+... ....++.|+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~L----------rGF--Dqdmae~v~~~----m~~~Gikf~~~~vp 261 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILL----------RGF--DQDMAELVAEH----MEERGIKFLRKTVP 261 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcCCCcEEEEEEeec----------ccc--cHHHHHHHHHH----HHHhCCceeecccc
Confidence 457899999999999999999999999987665211 010 11222222222 2235666655
Q ss_pred EEEEEEECCCCEEEEeeecCccccCCCceeeeeCCeEEEcCCCCccC
Q 010844 138 SHCAGIDTDNHVVHCETVTDELRTLEPWKFKISYDKLVIALGAEAST 184 (499)
Q Consensus 138 ~~v~~id~~~~~v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~ 184 (499)
.+|..++...-.|...+...+ ++.+-.||.++.|.|-.+..
T Consensus 262 ~~Veq~~~g~l~v~~k~t~t~------~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 262 ERVEQIDDGKLRVFYKNTNTG------EEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred eeeeeccCCcEEEEeeccccc------ccccchhhhhhhhhccccch
Confidence 356666554433333332221 23467899999999977654
No 488
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.20 E-value=0.21 Score=49.28 Aligned_cols=119 Identities=14% Similarity=0.218 Sum_probs=63.9
Q ss_pred CcEEEECCchHHHHHHHhccC----CCCeEEEEcCCCCc-----------ccccchhhhhccC-------------CCCC
Q 010844 63 PRVVVLGSGWAGCRLMKGIDT----SLYDVVCVSPRNHM-----------VFTPLLASTCVGT-------------LEFR 114 (499)
Q Consensus 63 ~~VvIIGgG~aGl~aA~~L~~----~g~~V~lie~~~~~-----------~~~~~~~~~~~g~-------------~~~~ 114 (499)
..|.|||+|-++..+-+.|.. ...++.-|.|+..+ .|.|-......+. +..+
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Yk 267 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYK 267 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccc
Confidence 349999999999988887754 34567778887543 1222222111111 1111
Q ss_pred cccc-chhhhcc-----cccc-CCCeEEEE-EEEEEEECCCCE-EEEeeecCccccCCCceeeeeCCeEEEcCCCCccCC
Q 010844 115 SVAE-PIARIQP-----AISR-EPGSYFFL-SHCAGIDTDNHV-VHCETVTDELRTLEPWKFKISYDKLVIALGAEASTF 185 (499)
Q Consensus 115 ~~~~-~~~~~~~-----~~~~-~~~~~~~~-~~v~~id~~~~~-v~~~~~~~~~~~~~~~~~~i~yd~LViAtG~~~~~~ 185 (499)
-+.. .++++.. .+.. .+.+..+. .+|..+...... +.+..... ..++..++++|.||+|||-+...|
T Consensus 268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~----~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHH----ETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeec----cCCCceEEEeeEEEEecccccCCc
Confidence 1111 1122211 1111 23444443 477788776633 44433211 123457899999999999886655
No 489
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=94.20 E-value=0.18 Score=49.94 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=27.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN 276 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 276 (499)
+|+|||||..|.-.|..|.+.+ .+|.+++..
T Consensus 4 ~VvIvGgGI~Gla~A~~l~r~G--------------~~v~VlE~~ 34 (420)
T KOG2614|consen 4 KVVIVGGGIVGLATALALHRKG--------------IDVVVLESR 34 (420)
T ss_pred cEEEECCcHHHHHHHHHHHHcC--------------CeEEEEeec
Confidence 8999999999999999999877 777777764
No 490
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.19 E-value=0.1 Score=47.50 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=46.9
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||..|...+..|.+.+ .+|+++.+. +.+++. +...+..|.+....
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~g--------------a~V~VIs~~-----~~~~l~----~l~~~~~i~~~~~~---- 62 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYG--------------AHIVVISPE-----LTENLV----KLVEEGKIRWKQKE---- 62 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC--------------CeEEEEcCC-----CCHHHH----HHHhCCCEEEEecC----
Confidence 369999999999999999998876 899999642 233332 33333334442211
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010844 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+....--.+|+||.||+...
T Consensus 63 ------~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 63 ------FEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred ------CChhhcCCceEEEEcCCCHH
Confidence 11111235899999998765
No 491
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.15 E-value=0.052 Score=56.19 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
+.++|+|+|+|.+|+.+|..|++.|++|+++|++.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35789999999999999999999999999999875
No 492
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.04 E-value=0.22 Score=48.03 Aligned_cols=109 Identities=27% Similarity=0.371 Sum_probs=69.2
Q ss_pred cEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCC-CcCC------------------------------
Q 010844 232 HCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEAN-EILS------------------------------ 280 (499)
Q Consensus 232 ~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~-~~l~------------------------------ 280 (499)
.-+|||||.-|+..|...+.++ .++-+++.. .+-.
T Consensus 22 DylvIGgGSGGvasARrAa~~G--------------Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG 87 (478)
T KOG0405|consen 22 DYLVIGGGSGGVASARRAASHG--------------AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYG 87 (478)
T ss_pred ceEEEcCCcchhHHhHHHHhcC--------------ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcC
Confidence 6799999999999999998887 666666654 2211
Q ss_pred -------CCC------------HHHHHHHHHHHHhCCCEEEeCceEEEeCC--eEEECCCcE--EeeeEEEEcCCCCcc-
Q 010844 281 -------SFD------------DRLRHYATTQLSKSGVRLVRGIVKDVDSQ--KLILNDGTE--VPYGLLVWSTGVGPS- 336 (499)
Q Consensus 281 -------~~~------------~~~~~~~~~~l~~~gV~v~~~~v~~v~~~--~v~~~~g~~--i~~D~vi~a~G~~p~- 336 (499)
.|+ .++....++.|.+.+|+++.++-.=+++. .|...||++ +.+..+++|+|-+|.
T Consensus 88 ~~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~ 167 (478)
T KOG0405|consen 88 FPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPII 167 (478)
T ss_pred CccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCC
Confidence 011 01223334556778899998854444455 455567743 679999999999986
Q ss_pred hhcccCCCCCCCCCceee
Q 010844 337 TLVKSLDLPKSPGGRIGI 354 (499)
Q Consensus 337 ~~~~~~~l~~~~~G~i~v 354 (499)
|-+....+.+|.+|+...
T Consensus 168 PnIpG~E~gidSDgff~L 185 (478)
T KOG0405|consen 168 PNIPGAELGIDSDGFFDL 185 (478)
T ss_pred CCCCchhhccccccccch
Confidence 423223344455555443
No 493
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.03 E-value=0.055 Score=47.69 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=29.8
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+.+|||+|+|.+|..||..|...|++|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34799999999999999999999999999999764
No 494
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.99 E-value=0.16 Score=43.68 Aligned_cols=73 Identities=15% Similarity=0.318 Sum_probs=0.0
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEEeCC
Q 010844 233 CVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDVDSQ 312 (499)
Q Consensus 233 vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v~~~ 312 (499)
|+|+|+|.+|.-+|..|+..+ .+|+++.+ .. -.+.+++.|+.+....-......
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--------------~~V~l~~r-----------~~-~~~~~~~~g~~~~~~~~~~~~~~ 54 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--------------HDVTLVSR-----------SP-RLEAIKEQGLTITGPDGDETVQP 54 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--------------CEEEEEES-----------HH-HHHHHHHHCEEEEETTEEEEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCC--------------CceEEEEc-----------cc-cHHhhhheeEEEEecccceeccc
Q ss_pred eEEECCC--cEEeeeEEEEcC
Q 010844 313 KLILNDG--TEVPYGLLVWST 331 (499)
Q Consensus 313 ~v~~~~g--~~i~~D~vi~a~ 331 (499)
.....+. ..-++|+||+|+
T Consensus 55 ~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 55 PIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESSHGHHHSTESEEEE-S
T ss_pred ccccCcchhccCCCcEEEEEe
No 495
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.90 E-value=0.064 Score=45.35 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHhccCCCCe-EEEEcCCC
Q 010844 61 EKPRVVVLGSGWAGCRLMKGIDTSLYD-VVCVSPRN 95 (499)
Q Consensus 61 ~~~~VvIIGgG~aGl~aA~~L~~~g~~-V~lie~~~ 95 (499)
+.++|+|||+|-+|-.++..|...|++ |+|+.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 457999999999999999999999987 99999863
No 496
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.76 E-value=0.06 Score=54.31 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=31.4
Q ss_pred CCCCCCCCCCeEEeccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 010844 356 EWLRVPSVQDVFAVGDCSGYLESTGKTVLPALAQVAERQGKYLFSLLNRIGK 407 (499)
Q Consensus 356 ~~l~~~~~~~Ifa~GD~a~~~~~~g~~~~p~~~~~A~~~g~~aa~~i~~~~~ 407 (499)
++|+++..||+|++|.+..+. --..|..+|..|+.|+...+.
T Consensus 323 ~~l~~k~~~~l~~AGqi~g~~----------Gy~ea~a~G~~Ag~n~~~~~~ 364 (436)
T PRK05335 323 PTLQLKKRPNLFFAGQITGVE----------GYVESAASGLLAGINAARLAL 364 (436)
T ss_pred hhccccCCCCEEeeeeecCch----------HHHHHHHHHHHHHHHHHHHhc
Confidence 445666679999999998531 123788999999999888775
No 497
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.49 E-value=0.12 Score=47.55 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=47.8
Q ss_pred cccEEEeCcChHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCcCCCCCHHHHHHHHHHHHhCCCEEEeCceEEE
Q 010844 230 LLHCVVVGGGPTGVEFSGELSDFIMRDVRQRYSHVKDYIHVTLIEANEILSSFDDRLRHYATTQLSKSGVRLVRGIVKDV 309 (499)
Q Consensus 230 ~~~vvVvGgG~~gve~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~v~~v 309 (499)
.++|+|||||.+|..=+..|.+.+ .+||+|.+. +.+++. +......|+++....
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~g--------------A~VtVVap~-----i~~el~----~l~~~~~i~~~~r~~--- 78 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKG--------------CYVYILSKK-----FSKEFL----DLKKYGNLKLIKGNY--- 78 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--------------CEEEEEcCC-----CCHHHH----HHHhCCCEEEEeCCC---
Confidence 358999999999998888888776 899999653 334443 333344566654321
Q ss_pred eCCeEEECCCcEEeeeEEEEcCCCCc
Q 010844 310 DSQKLILNDGTEVPYGLLVWSTGVGP 335 (499)
Q Consensus 310 ~~~~v~~~~g~~i~~D~vi~a~G~~p 335 (499)
+.+..-.+++||.||+-..
T Consensus 79 -------~~~dl~g~~LViaATdD~~ 97 (223)
T PRK05562 79 -------DKEFIKDKHLIVIATDDEK 97 (223)
T ss_pred -------ChHHhCCCcEEEECCCCHH
Confidence 1111234899999997543
No 498
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.39 E-value=0.063 Score=50.82 Aligned_cols=33 Identities=30% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHhccCCCCeEEEEcCC
Q 010844 62 KPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPR 94 (499)
Q Consensus 62 ~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~ 94 (499)
+-+|+|||||.+|..+|+-+...|.+||++|.+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 468999999999999999999999999999987
No 499
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=93.37 E-value=0.099 Score=51.52 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCCCcEEEECCchHHHHHHHhccCC----CCeEEEEcCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTS----LYDVVCVSPR 94 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~----g~~V~lie~~ 94 (499)
..+.+|||+|||+.|++.|..|... ..+|.|+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 3478999999999999999999753 4689999976
No 500
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.33 E-value=0.089 Score=48.27 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCcEEEECCchHHHHHHHhccCCCCeEEEEcCCC
Q 010844 60 NEKPRVVVLGSGWAGCRLMKGIDTSLYDVVCVSPRN 95 (499)
Q Consensus 60 ~~~~~VvIIGgG~aGl~aA~~L~~~g~~V~lie~~~ 95 (499)
.+.++|+|||||..++.=+..|.+.|.+||||.++-
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 456799999999999998999999999999998763
Done!