Query 010846
Match_columns 499
No_of_seqs 270 out of 2134
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1979 DNA mismatch repair pr 100.0 4E-126 8E-131 980.4 31.0 475 18-499 4-501 (694)
2 COG0323 MutL DNA mismatch repa 100.0 2.6E-87 5.6E-92 734.0 40.2 332 22-359 4-337 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 6.4E-73 1.4E-77 622.5 35.1 328 20-356 1-329 (617)
4 TIGR00585 mutl DNA mismatch re 100.0 4.9E-68 1.1E-72 541.2 31.0 308 20-333 1-312 (312)
5 KOG1978 DNA mismatch repair pr 100.0 2.4E-60 5.2E-65 503.6 23.9 314 22-355 1-320 (672)
6 KOG1977 DNA mismatch repair pr 100.0 1.3E-45 2.8E-50 387.2 14.4 306 21-354 1-310 (1142)
7 PRK14867 DNA topoisomerase VI 100.0 6.2E-30 1.4E-34 277.8 23.3 246 41-319 36-307 (659)
8 cd03483 MutL_Trans_MLH1 MutL_T 100.0 7.3E-30 1.6E-34 227.1 14.4 127 225-353 1-127 (127)
9 PF01119 DNA_mis_repair: DNA m 100.0 1.3E-28 2.9E-33 216.7 13.8 118 230-353 1-119 (119)
10 cd03482 MutL_Trans_MutL MutL_T 100.0 4.8E-28 1E-32 214.3 14.2 121 227-353 2-123 (123)
11 cd03485 MutL_Trans_hPMS_1_like 100.0 1.8E-27 3.8E-32 213.3 15.0 124 225-352 1-131 (132)
12 cd03486 MutL_Trans_MLH3 MutL_T 99.9 4.9E-27 1.1E-31 212.7 14.1 122 225-353 1-141 (141)
13 cd00782 MutL_Trans MutL_Trans: 99.9 1.6E-26 3.5E-31 204.0 14.0 120 227-352 2-122 (122)
14 cd03484 MutL_Trans_hPMS_2_like 99.9 3.9E-26 8.5E-31 207.0 14.8 127 225-352 1-141 (142)
15 TIGR01055 parE_Gneg DNA topois 99.9 2.6E-24 5.6E-29 236.5 25.8 178 20-211 7-204 (625)
16 PRK14868 DNA topoisomerase VI 99.9 4.5E-25 9.7E-30 240.3 14.1 201 41-269 46-271 (795)
17 smart00433 TOP2c Topoisomerase 99.9 7.4E-24 1.6E-28 232.5 21.2 258 43-322 3-298 (594)
18 PRK05644 gyrB DNA gyrase subun 99.9 1E-22 2.2E-27 224.6 25.8 281 18-322 9-336 (638)
19 TIGR01059 gyrB DNA gyrase, B s 99.9 1E-22 2.2E-27 225.9 25.0 177 21-211 5-202 (654)
20 PRK05559 DNA topoisomerase IV 99.9 2.6E-22 5.5E-27 221.4 25.2 279 18-321 9-333 (631)
21 PRK14939 gyrB DNA gyrase subun 99.9 1.3E-21 2.8E-26 217.1 21.3 179 18-211 8-209 (756)
22 TIGR01052 top6b DNA topoisomer 99.9 1.8E-21 3.9E-26 206.5 16.1 158 40-212 27-205 (488)
23 PRK05218 heat shock protein 90 99.9 5.1E-20 1.1E-24 202.8 23.4 283 30-352 16-345 (613)
24 PRK04184 DNA topoisomerase VI 99.8 1.3E-18 2.9E-23 186.5 17.2 155 42-212 37-214 (535)
25 cd00329 TopoII_MutL_Trans MutL 99.7 2.3E-17 4.9E-22 140.9 10.5 101 227-333 2-107 (107)
26 PF13589 HATPase_c_3: Histidin 99.6 5E-16 1.1E-20 140.0 3.8 101 41-145 2-106 (137)
27 COG1389 DNA topoisomerase VI, 99.6 2.2E-14 4.8E-19 147.5 14.3 163 39-211 34-213 (538)
28 TIGR01058 parE_Gpos DNA topois 99.5 1.7E-12 3.7E-17 143.4 22.1 179 19-211 7-207 (637)
29 PRK14083 HSP90 family protein; 99.5 2E-12 4.4E-17 141.8 18.6 282 35-352 17-325 (601)
30 COG0187 GyrB Type IIA topoisom 99.4 2.1E-12 4.6E-17 138.5 17.3 179 19-211 8-210 (635)
31 PTZ00130 heat shock protein 90 99.3 1.2E-10 2.6E-15 129.8 18.9 160 34-206 81-270 (814)
32 PTZ00272 heat shock protein 83 99.3 1.5E-10 3.3E-15 128.7 18.2 155 38-206 22-205 (701)
33 COG0326 HtpG Molecular chapero 99.2 1.5E-10 3.2E-15 125.1 16.9 279 38-352 24-353 (623)
34 PTZ00109 DNA gyrase subunit b; 99.2 1.1E-11 2.4E-16 138.5 7.7 182 19-211 102-357 (903)
35 PHA02569 39 DNA topoisomerase 99.2 7.6E-11 1.6E-15 129.7 10.3 175 21-211 3-223 (602)
36 PTZ00108 DNA topoisomerase 2-l 99.0 1.6E-09 3.4E-14 127.1 13.9 178 21-210 9-240 (1388)
37 PLN03128 DNA topoisomerase 2; 99.0 3.9E-08 8.4E-13 114.5 21.9 257 38-322 49-346 (1135)
38 PLN03237 DNA topoisomerase 2; 98.9 9E-09 1.9E-13 120.5 13.3 179 21-211 31-259 (1465)
39 PF02518 HATPase_c: Histidine 98.7 4.3E-08 9.3E-13 84.2 8.6 79 40-125 4-85 (111)
40 COG3290 CitA Signal transducti 98.2 2.3E-06 4.9E-11 91.5 7.6 78 35-123 421-504 (537)
41 COG4191 Signal transduction hi 98.2 1.9E-06 4.1E-11 92.7 6.5 60 40-99 496-560 (603)
42 KOG0019 Molecular chaperone (H 98.2 8.2E-06 1.8E-10 87.6 9.8 197 21-234 42-262 (656)
43 TIGR02938 nifL_nitrog nitrogen 98.1 1.3E-05 2.9E-10 85.0 10.0 74 42-124 388-468 (494)
44 PRK15053 dpiB sensor histidine 98.0 1.9E-05 4.2E-10 86.2 10.3 75 41-124 432-513 (545)
45 KOG0020 Endoplasmic reticulum 98.0 2.9E-05 6.3E-10 81.3 9.6 142 44-199 98-272 (785)
46 PRK10364 sensor protein ZraS; 97.9 6.7E-05 1.4E-09 80.3 10.8 72 41-124 348-422 (457)
47 PRK10604 sensor protein RstB; 97.9 8.6E-05 1.9E-09 79.2 11.1 77 42-124 320-397 (433)
48 TIGR01386 cztS_silS_copS heavy 97.9 8.4E-05 1.8E-09 78.7 10.8 77 42-124 354-433 (457)
49 cd00075 HATPase_c Histidine ki 97.8 9.9E-05 2.1E-09 60.1 8.7 75 43-125 2-80 (103)
50 PRK11086 sensory histidine kin 97.8 0.00011 2.5E-09 79.7 10.9 72 41-124 433-509 (542)
51 PRK09470 cpxA two-component se 97.8 8.9E-05 1.9E-09 78.8 9.5 57 42-98 354-411 (461)
52 PRK09303 adaptive-response sen 97.7 0.00011 2.5E-09 77.0 9.3 58 42-99 273-334 (380)
53 PRK10755 sensor protein BasS/P 97.7 0.0002 4.4E-09 73.8 10.7 73 42-124 248-323 (356)
54 PRK11006 phoR phosphate regulo 97.7 0.00014 2.9E-09 77.4 9.4 78 41-124 317-397 (430)
55 PRK10549 signal transduction h 97.7 0.00026 5.6E-09 75.5 11.0 77 42-124 353-432 (466)
56 PRK13837 two-component VirA-li 97.7 0.0004 8.7E-09 80.3 13.2 90 42-144 561-673 (828)
57 PRK11100 sensory histidine kin 97.6 0.0004 8.6E-09 73.8 11.5 76 42-124 369-447 (475)
58 PRK10815 sensor protein PhoQ; 97.6 0.00034 7.3E-09 76.1 10.8 73 42-124 379-452 (485)
59 COG0642 BaeS Signal transducti 97.6 0.00011 2.3E-09 72.8 6.3 60 41-100 228-289 (336)
60 smart00387 HATPase_c Histidine 97.5 0.00033 7.2E-09 57.9 7.7 58 41-98 5-65 (111)
61 PRK09467 envZ osmolarity senso 97.5 0.00042 9E-09 73.3 9.8 56 42-97 332-388 (435)
62 TIGR02916 PEP_his_kin putative 97.5 0.0003 6.6E-09 79.5 9.1 71 42-124 580-654 (679)
63 PRK11073 glnL nitrogen regulat 97.5 0.00036 7.9E-09 71.5 8.9 58 41-98 237-308 (348)
64 PRK11091 aerobic respiration c 97.4 0.00068 1.5E-08 77.7 11.0 88 41-133 398-493 (779)
65 PRK10337 sensor protein QseC; 97.4 0.00056 1.2E-08 72.7 9.3 54 42-98 353-408 (449)
66 PRK15347 two component system 97.4 0.00062 1.3E-08 79.1 10.3 73 41-123 513-587 (921)
67 PRK11360 sensory histidine kin 97.4 0.00025 5.4E-09 77.2 6.3 58 41-98 500-561 (607)
68 TIGR01925 spIIAB anti-sigma F 97.4 0.0013 2.9E-08 58.5 9.8 58 39-98 37-100 (137)
69 TIGR03785 marine_sort_HK prote 97.4 0.001 2.2E-08 75.7 11.0 77 42-124 598-677 (703)
70 TIGR02966 phoR_proteo phosphat 97.3 0.0012 2.5E-08 66.3 10.2 57 42-98 230-289 (333)
71 PRK10618 phosphotransfer inter 97.3 0.0019 4.2E-08 75.1 12.4 96 41-144 565-670 (894)
72 PRK10490 sensor protein KdpD; 97.2 0.0017 3.7E-08 75.8 11.3 58 42-99 779-839 (895)
73 PRK13557 histidine kinase; Pro 97.1 0.0017 3.6E-08 70.3 9.5 58 42-99 278-353 (540)
74 PRK09835 sensor kinase CusS; P 97.1 0.0031 6.8E-08 67.4 11.4 58 41-98 375-435 (482)
75 TIGR02956 TMAO_torS TMAO reduc 97.1 0.002 4.3E-08 75.4 9.7 75 41-123 579-656 (968)
76 PRK11466 hybrid sensory histid 97.0 0.0028 6E-08 73.9 10.0 83 42-134 562-651 (914)
77 PRK04069 serine-protein kinase 97.0 0.0025 5.4E-08 58.9 7.6 83 40-130 41-130 (161)
78 PRK10547 chemotaxis protein Ch 96.9 0.0048 1E-07 69.4 10.7 116 44-175 388-544 (670)
79 PRK10841 hybrid sensory kinase 96.9 0.0072 1.6E-07 70.9 12.6 86 42-133 563-655 (924)
80 PRK11107 hybrid sensory histid 96.9 0.0036 7.8E-08 72.7 9.8 87 42-134 409-507 (919)
81 COG5002 VicK Signal transducti 96.9 0.0026 5.5E-08 65.0 7.0 75 41-121 342-419 (459)
82 PRK03660 anti-sigma F factor; 96.8 0.011 2.3E-07 53.2 10.3 58 39-98 37-100 (146)
83 PRK09959 hybrid sensory histid 96.8 0.0056 1.2E-07 73.6 10.3 59 41-99 828-893 (1197)
84 COG4192 Signal transduction hi 96.7 0.0024 5.2E-08 67.2 5.6 65 35-100 559-628 (673)
85 TIGR01924 rsbW_low_gc serine-p 96.7 0.0062 1.3E-07 56.2 7.9 85 38-130 39-130 (159)
86 COG3851 UhpB Signal transducti 96.6 0.012 2.6E-07 60.5 9.4 45 40-84 409-455 (497)
87 COG3852 NtrB Signal transducti 96.6 0.0042 9.1E-08 62.6 6.0 58 42-100 242-317 (363)
88 COG2205 KdpD Osmosensitive K+ 96.5 0.0048 1E-07 69.2 6.3 56 42-97 776-834 (890)
89 PRK11644 sensory histidine kin 96.4 0.017 3.8E-07 63.0 10.4 45 42-86 411-457 (495)
90 COG5000 NtrY Signal transducti 96.3 0.006 1.3E-07 66.4 5.8 59 42-100 601-669 (712)
91 PF13581 HATPase_c_2: Histidin 96.2 0.024 5.2E-07 49.4 8.2 77 39-129 29-113 (125)
92 COG3850 NarQ Signal transducti 96.2 0.0077 1.7E-07 64.7 5.8 45 41-85 481-527 (574)
93 PRK13560 hypothetical protein; 95.9 0.034 7.4E-07 63.3 10.0 44 42-85 712-762 (807)
94 PRK10600 nitrate/nitrite senso 95.9 0.038 8.3E-07 61.1 9.9 44 42-85 470-515 (569)
95 COG2972 Predicted signal trans 95.7 0.021 4.6E-07 61.6 6.9 49 40-88 349-404 (456)
96 KOG0355 DNA topoisomerase type 95.4 0.022 4.7E-07 64.0 5.7 166 33-212 45-231 (842)
97 COG0643 CheA Chemotaxis protei 95.3 0.048 1E-06 61.9 8.0 54 41-94 432-501 (716)
98 COG4585 Signal transduction hi 95.1 0.04 8.7E-07 57.5 6.3 47 40-86 278-326 (365)
99 COG3920 Signal transduction hi 93.7 0.13 2.9E-06 50.1 5.9 46 40-85 121-174 (221)
100 COG2172 RsbW Anti-sigma regula 93.3 0.66 1.4E-05 42.3 9.5 92 38-141 37-136 (146)
101 PRK10935 nitrate/nitrite senso 93.3 0.16 3.4E-06 55.7 6.5 44 42-85 472-518 (565)
102 COG4251 Bacteriophytochrome (l 92.8 0.42 9.2E-06 52.7 8.5 96 42-147 637-742 (750)
103 PRK13559 hypothetical protein; 92.5 0.19 4.1E-06 51.7 5.5 45 41-85 267-319 (361)
104 KOG0787 Dehydrogenase kinase [ 91.7 0.45 9.7E-06 49.4 6.8 78 39-117 257-349 (414)
105 COG3275 LytS Putative regulato 91.2 0.25 5.4E-06 52.8 4.5 45 40-85 455-507 (557)
106 COG4564 Signal transduction hi 84.4 1.3 2.8E-05 45.4 4.4 47 40-86 358-406 (459)
107 PRK00095 mutL DNA mismatch rep 70.8 4.4 9.5E-05 45.7 4.0 31 467-497 427-457 (617)
108 PF14501 HATPase_c_5: GHKL dom 57.4 68 0.0015 26.6 8.0 66 41-124 5-76 (100)
109 KOG1845 MORC family ATPases [C 41.8 24 0.00052 40.6 3.5 85 43-132 148-245 (775)
110 COG1929 Glycerate kinase [Carb 35.3 29 0.00064 36.2 2.6 137 22-200 96-232 (378)
111 COG5381 Uncharacterized protei 27.3 1.3E+02 0.0029 27.6 5.0 51 37-87 59-111 (184)
112 PRK13669 hypothetical protein; 25.3 63 0.0014 26.3 2.4 42 257-300 30-71 (78)
113 PF06009 Laminin_II: Laminin D 24.7 32 0.00068 30.9 0.7 36 40-76 89-124 (138)
114 PF07492 Trehalase_Ca-bi: Neut 21.8 67 0.0014 21.2 1.6 13 68-80 11-23 (30)
115 KOG3938 RGS-GAIP interacting p 21.7 74 0.0016 31.9 2.6 24 58-82 127-150 (334)
116 TIGR03737 PRTRC_B PRTRC system 21.3 1.6E+02 0.0034 29.0 4.8 58 278-337 35-93 (228)
117 cd01611 GABARAP Ubiquitin doma 21.3 1.8E+02 0.0038 25.3 4.6 37 274-315 70-106 (112)
118 TIGR00045 glycerate kinase. Th 20.8 68 0.0015 33.9 2.4 62 45-124 112-173 (375)
119 PF04025 DUF370: Domain of unk 20.5 1.1E+02 0.0024 24.6 2.9 33 45-80 25-58 (73)
No 1
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=3.7e-126 Score=980.43 Aligned_cols=475 Identities=52% Similarity=0.789 Sum_probs=429.4
Q ss_pred CCccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccC
Q 010846 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (499)
.++.||+||++|||||||||||++|++|||||||||||||||.|.|.+++||+++++|+|||.||.++||+.+|+||+||
T Consensus 4 ~~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 4 VPRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred cchhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhh
Q 010846 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (499)
Q Consensus 98 K~~~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRr 177 (499)
|+++|+||.+++||||||||||||+|||+|+|+||++++.|||++.|.||++...|+||++.+||+|+|+|||||+|+||
T Consensus 84 KL~kFEDL~~lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~~~pKpcAgk~GT~I~vedLFYN~~~Rr 163 (694)
T KOG1979|consen 84 KLTKFEDLFSLSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMIATPKPCAGKQGTIITVEDLFYNMPTRR 163 (694)
T ss_pred hcchhHHHHhhhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccccCCCCccCCCceEEEehHhhccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHhChhhhccce-Eee-ecccCCCCc
Q 010846 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLV-QLE-ASEYNDSSS 255 (499)
Q Consensus 178 k~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~-~i~-~~~~~~~~~ 255 (499)
++|++.++|+++|.+++.+||+|+|+|+|+|++.|+....|++.+..+..|+|+.+||..++++|+ ++. +++. .
T Consensus 164 kal~~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~~-~--- 239 (694)
T KOG1979|consen 164 KALRNHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDSK-L--- 239 (694)
T ss_pred HHhcCcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccCc-e---
Confidence 999999999999999999999999999999999999999999999999999999999999999999 665 3333 3
Q ss_pred ceEEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecC
Q 010846 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLL 335 (499)
Q Consensus 256 ~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~ 335 (499)
+.|+++|||++++|..+|...++|||||+|+|..|+++|+.+|+.|||++.+||+||+|.+||++|||||||||+||+|+
T Consensus 240 l~f~~~g~Isn~n~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~yLpk~~~pFvYLsL~i~p~~vDVNVHPTK~eV~FL 319 (694)
T KOG1979|consen 240 LKFSAEGYISNANYSAKKSILVLFINGRLVESDELRHALEEVYAAYLPKGHHPFVYLSLNIDPENVDVNVHPTKREVHFL 319 (694)
T ss_pred eEEeccceEechhhhhhhheEEEEEcCcEeehHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHcccccCCCcceeEee
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCcccccccccCCCCCCCCCCCCCC---CCCCCCcCcCCCCCceeecCCCCCCCccccc
Q 010846 336 NQELIVEKIQSAVELKLRQSNDSRTYKEQTVESSPSSPYNPSKDLH---LNPSGSKLQKVPVNKMVRTDSSDPAGRLHAY 412 (499)
Q Consensus 336 ~e~~I~~~I~~~i~~~L~~~~~sr~f~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vRtd~~~~~~~l~~f 412 (499)
++++|++.|++.|++.|.+.+++|+|..|.++|+....... +++. .+++.+++.|+|+++|||||++ +++|++|
T Consensus 320 ~qEeIie~I~~~ie~~L~~~d~er~~~~q~~iP~~~~~~~e-r~~~~~~~~~s~~ks~k~~~~~mVRtDss--e~ki~~f 396 (694)
T KOG1979|consen 320 NQEEIIERICQQIEERLSALDTERTFLKQVMIPGPSTLKSE-RNKPSLKQSPSAQKSDKRYENKMVRTDSS--ERKIDSF 396 (694)
T ss_pred cHHHHHHHHHHHHHHHHhccCcccchhhhhcccCCcccccc-ccCccccccccccccchhcccceeecccc--ccchhhh
Confidence 99999999999999999999999999999999987644322 2221 1445567779999999999999 9999999
Q ss_pred cccC-C-CCCCCC-C---CC----cc---c--cccchh---hccCcccccccccHHHHHHHHHHhCCcchHhhccCCeEE
Q 010846 413 VQSK-P-HTSVAS-G---PN----LS---A--VRSSVR---QRRNLNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFI 474 (499)
Q Consensus 413 ~~~~-~-~~~~~~-~---~~----~~---~--~~~~~~---~~~~~~~~~~l~Si~~L~~~v~~~~~~~l~~~~~~~~~V 474 (499)
+++. . ..+++. + +. .. + +....+ ..+++++.++|+||++||++|.+++|..|+++|++|+||
T Consensus 397 l~~~~~~~~s~~~~nes~~~~~s~~~~e~s~~p~dd~r~~~~~~~~rE~~~L~Si~~Lr~eV~~~~h~~l~e~~~n~~yV 476 (694)
T KOG1979|consen 397 LSPLTQVGSSNSTGNESEQGDDSSLSNENSRLPEDDVRFEYTAKTPRERFRLESIKKLRKEVIDSCHVVLTEMFRNLSYV 476 (694)
T ss_pred hCCccccCcccccccccccccccccccccccCccchhhhhhccccchhccchhhHHHHHHHHHhhccHHHHHHHHhccee
Confidence 9432 1 111100 0 00 00 0 000111 113444459999999999999999999999999999999
Q ss_pred EEEcCceeEEEeCCcEEEEeccCCC
Q 010846 475 GMADDVYALLQHNTHMYLANVVSLS 499 (499)
Q Consensus 475 G~vd~~~~liQ~~t~Lylvd~~~~~ 499 (499)
||||++++|+||+|+||+||++.||
T Consensus 477 G~vd~~~alvQh~t~Ly~~d~~~ls 501 (694)
T KOG1979|consen 477 GVVDERTALVQHGTSLYLCDTVSLS 501 (694)
T ss_pred eeechhhhhhhcCceEEEechHHHH
Confidence 9999999999999999999999875
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-87 Score=734.03 Aligned_cols=332 Identities=41% Similarity=0.612 Sum_probs=311.7
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCccc
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~ 101 (499)
||.||++++|||+|||||.+|++|||||||||||||||.|+|.++.||+.+|+|.|||+||+++||+++|.||+|||+.+
T Consensus 4 Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSKI~~ 83 (638)
T COG0323 4 IRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSKIAS 83 (638)
T ss_pred ceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhhhhcc
Q 010846 102 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ 181 (499)
Q Consensus 102 ~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk~lk 181 (499)
++||..+.|||||||||+||++||+|+|+||+++...||++.+.+|.+....+|++.+.||||.|+|||||+|+|+|++|
T Consensus 84 ~~DL~~I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~~~~p~a~~~GTtVeV~dLF~NtPaRrKflk 163 (638)
T COG0323 84 LEDLFRIRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEVTVKPAAHPVGTTVEVRDLFYNTPARRKFLK 163 (638)
T ss_pred hhHHHHhhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccccccCCCCCCCCEEEehHhhccChHHHHhhc
Confidence 99999999999999999999999999999999998899999999988764667888889999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhCCCeEEEEEECCceee-eeecCCCCCHHHHHHHHhChhhhccceEeeecccCCCCcceEEE
Q 010846 182 NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARA-DVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKM 260 (499)
Q Consensus 182 ~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~-~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v 260 (499)
+.+.|+.+|.++|++|||+||+|+|+|.++|+... .+.+++.+...++++.+||..+++++++++.... + +++
T Consensus 164 s~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~~-~-----~~l 237 (638)
T COG0323 164 SEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEHE-D-----LRL 237 (638)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCCC-c-----eEE
Confidence 99999999999999999999999999999987433 4455666777779999999999999999877644 4 999
Q ss_pred EEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhH
Q 010846 261 DGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL 339 (499)
Q Consensus 261 ~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~ 339 (499)
.||++.|.++ .++..|++|||||+|.++.|.+||.++|+.++|.++||++||+|+|+|..|||||||+|+||+|++++.
T Consensus 238 ~G~v~~P~~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY~~~L~~~r~P~~vL~l~l~p~~vDVNVHP~K~EVrf~~~~~ 317 (638)
T COG0323 238 SGYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAYADYLPRGRYPVFVLFLELDPELVDVNVHPAKKEVRFSDERL 317 (638)
T ss_pred EEEecccccccCCccceEEEECCCEeccHHHHHHHHHHHHhhccCCCCcEEEEEEeeChhhcccccCCCcceEEecCHHH
Confidence 9999999644 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCc
Q 010846 340 IVEKIQSAVELKLRQSNDSR 359 (499)
Q Consensus 340 I~~~I~~~i~~~L~~~~~sr 359 (499)
|.++|+++|.++|.......
T Consensus 318 i~~~I~~~I~~~L~~~~~~~ 337 (638)
T COG0323 318 VHDLIYEAIKEALAQQGLIP 337 (638)
T ss_pred HHHHHHHHHHHHHHhcccCC
Confidence 99999999999998876554
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=6.4e-73 Score=622.47 Aligned_cols=328 Identities=38% Similarity=0.610 Sum_probs=306.4
Q ss_pred ccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
++|++||++|+++|+|||||.+|+++|+||||||||||||.|.|.+..+|...|+|+|||+||+++|++.+|.+|+|||+
T Consensus 1 ~~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi 80 (617)
T PRK00095 1 MPIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKI 80 (617)
T ss_pred CCceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCC
Confidence 36999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhhhh
Q 010846 100 SKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKT 179 (499)
Q Consensus 100 ~~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk~ 179 (499)
.+++|+.++.|||||||||+||++||+|+|+||+.++..||++.|.+|++. ...+++..+||+|+|+|||||+|+|+++
T Consensus 81 ~~~~dl~~~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~-~~~~~~~~~GT~V~v~~LF~n~P~Rrkf 159 (617)
T PRK00095 81 ASLDDLEAIRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV-EVKPAAHPVGTTIEVRDLFFNTPARRKF 159 (617)
T ss_pred CChhHhhccccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc-ceecccCCCCCEEEechhhccCcHHHHh
Confidence 999999999999999999999999999999999998888999999999764 3456667899999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHhChhhhccceEeeecccCCCCcceEE
Q 010846 180 LQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 259 (499)
Q Consensus 180 lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~ 259 (499)
+++.+.++.+|.+++++||++||+|+|+|.+.++ ..+++.+..++.+++..+||..++.+++.+..+.. + ++
T Consensus 160 lk~~~~e~~~i~~~v~~~Al~~p~i~f~l~~~~~--~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~~-~-----~~ 231 (617)
T PRK00095 160 LKSEKTELGHIDDVVNRLALAHPDVAFTLTHNGK--LVLQTRGAGQLLQRLAAILGREFAENALPIDAEHG-D-----LR 231 (617)
T ss_pred ccCcHHHHHHHHHHHHHHhhcCCCcEEEEEECCE--EEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccCC-C-----EE
Confidence 9988899999999999999999999999999874 45777778899999999999999999999886644 4 99
Q ss_pred EEEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChh
Q 010846 260 MDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQE 338 (499)
Q Consensus 260 v~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~ 338 (499)
++||++.|.+. .++..|++|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.|||||||+|++|+|.+|+
T Consensus 232 i~g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~l~i~~~~~~~DvNvhP~K~ev~f~~e~ 311 (617)
T PRK00095 232 LSGYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDLLPRGRYPAFVLFLELDPHQVDVNVHPAKHEVRFRDER 311 (617)
T ss_pred EEEEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHhccCCCCcEEEEEEEeChHhcccccCCCcCEEEeCCHH
Confidence 99999998654 34677999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 010846 339 LIVEKIQSAVELKLRQSN 356 (499)
Q Consensus 339 ~I~~~I~~~i~~~L~~~~ 356 (499)
.|.+.|+++|.++|...+
T Consensus 312 ~i~~~i~~~i~~~l~~~~ 329 (617)
T PRK00095 312 LVHDLIVQAIQEALAQSG 329 (617)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999997643
No 4
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.9e-68 Score=541.20 Aligned_cols=308 Identities=44% Similarity=0.677 Sum_probs=280.1
Q ss_pred ccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
++|++||++++++|+||++|.+|.+||+|||+||+||||+.|.|.+..+|...|+|.|||.||++++++.+|++|+|||+
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~ 80 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKI 80 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCC
Confidence 37999999999999999999999999999999999999999999999888777999999999999999999999999999
Q ss_pred ccccccccccccCccchHHHhhhhhceEEEEEEE-cCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhhh
Q 010846 100 SKYEDLQSIKSMGFRGEALASMTYVGHVTVTTIT-KGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRK 178 (499)
Q Consensus 100 ~~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~-~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk 178 (499)
..++|+....+||||||||+||+++|+|+|+||+ +++.++|++. .+|....+..+++...||+|+|++||||+|+|++
T Consensus 81 ~~~~~~~~~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~GTtV~v~~lf~n~p~r~~ 159 (312)
T TIGR00585 81 QSFEDLERIETLGFRGEALASISSVSRLTITTKTSAADGLAWQAL-LEGGMIEEIKPAPRPVGTTVEVRDLFYNLPVRRK 159 (312)
T ss_pred CChhHhhcccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEE-ECCCcCcccccccCCCccEEEEchhhccCchhhh
Confidence 9999999999999999999999999999999999 7888899888 4555433445677789999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHH-HHHHHhChhhhccceEeeecccCCCCcce
Q 010846 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLD-SIRTVYGVSVASNLVQLEASEYNDSSSFV 257 (499)
Q Consensus 179 ~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~-~i~~ifG~~~a~~l~~i~~~~~~~~~~~~ 257 (499)
++++.+.++.+|++++++||++||+|+|.|...|+....+.+.+..++.+ +++++||..++++|+++..... ..
T Consensus 160 ~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~-----~~ 234 (312)
T TIGR00585 160 FLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDGKKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWED-----GD 234 (312)
T ss_pred hccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECCEEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccC-----CC
Confidence 88888899999999999999999999999999987665665556788999 6999999999999999973222 34
Q ss_pred EEEEEEEeCCCCCCCC-ce-EEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEe
Q 010846 258 FKMDGYVSNSNYVAKK-TT-MVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVS 333 (499)
Q Consensus 258 ~~v~G~is~~~~~~kk-~~-~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~ 333 (499)
++++||++.|....++ .. |++|||||||.++.|.|+|+++|+.++|+++||+++|+|+|||..+||||||+|+||+
T Consensus 235 ~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~~~~~~P~~vL~i~~p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 235 LQLEGFISEPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYLPKGQYPVFVLNLEIDPELVDVNVHPDKKEVR 312 (312)
T ss_pred EEEEEEEcCcccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhccCCCCcEEEEEEEEChHHcccCCCCCchhhC
Confidence 9999999999876544 34 9999999999999999999999999999999999999999999999999999999985
No 5
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-60 Score=503.65 Aligned_cols=314 Identities=32% Similarity=0.464 Sum_probs=285.4
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCccc
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~ 101 (499)
|++||++++.+|++|++|.++++|||||||||||||||.|+|.+++.|.+.|+|.|||+||++.|++-+|+.|+|||+.+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEE-cCeeecccccccCCCceEEEEEeeechhhhhhhhc
Q 010846 102 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (499)
Q Consensus 102 ~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk~l 180 (499)
|.|+....|||||||||.|||++|.|+|.||+++.+.|.++.|+ +|.+. ..++++.+.||||.|++||.|+|+|++.+
T Consensus 81 f~Dl~~l~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~~ar~~GTTV~v~~LF~tLPVR~kef 159 (672)
T KOG1978|consen 81 FADLAVLFTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKPVARGRGTTVMVRQLFSTLPVRRKEF 159 (672)
T ss_pred hhhhhhhhhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee-eeccccCCCCCEEEHhhhcccCCCchHHh
Confidence 99999999999999999999999999999999999999999996 57765 46789999999999999999999998866
Q ss_pred -cCCchhHHHHHHHHHHHHhhCCCeEEEEEEC---CceeeeeecCCCCCHHHHHHHHhChhhhccceEee-ecccCCCCc
Q 010846 181 -QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATSSRLDSIRTVYGVSVASNLVQLE-ASEYNDSSS 255 (499)
Q Consensus 181 -k~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~---g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~-~~~~~~~~~ 255 (499)
++.++++.+++.+++.||+.+++|+|.|.+. ++....|.+.+..+..+.++.+||...++.|.++. +...
T Consensus 160 ~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~is~~----- 234 (672)
T KOG1978|consen 160 QRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIFISSC----- 234 (672)
T ss_pred hcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccccccc-----
Confidence 6788999999999999999999999999874 56678899999999999999999999998888875 1111
Q ss_pred ceEEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecC
Q 010846 256 FVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLL 335 (499)
Q Consensus 256 ~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~ 335 (499)
+. | ........||+|||+|||+.+.+.+.|+.+|..|..+ .| |+|.+|++.+||||.|+|+.|.|.
T Consensus 235 --~~--g-----~~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~~-q~----l~i~V~~~~iDvNvtPDK~~vll~ 300 (672)
T KOG1978|consen 235 --HH--G-----CGRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNER-QY----LFLDVPEGCIDVNVTPDKRQVLLS 300 (672)
T ss_pred --cc--c-----ccccCccceeeeecCccCCHHHHHHHHHHHhhhhccc-cc----eeeeccccceeeeeCCCcceeecc
Confidence 11 1 1223456789999999999999999999999988654 33 999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHhcC
Q 010846 336 NQELIVEKIQSAVELKLRQS 355 (499)
Q Consensus 336 ~e~~I~~~I~~~i~~~L~~~ 355 (499)
+|..++..|++-+..++...
T Consensus 301 ~e~~vl~~l~~~l~~~~~s~ 320 (672)
T KOG1978|consen 301 NERSVLFSLRNSLVDFYNSN 320 (672)
T ss_pred chHHHHHHHHHHHHHHHhhc
Confidence 99999999999999988743
No 6
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-45 Score=387.16 Aligned_cols=306 Identities=28% Similarity=0.375 Sum_probs=255.6
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
+|+.||.+|..++++|.++.+++++|.||+-|||||+||.|.|.|....+. ++|.|||.||..+||.++++||+|||++
T Consensus 1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~s-v~ViDdG~G~~rdDl~~lg~ry~TSK~h 79 (1142)
T KOG1977|consen 1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETFS-VQVIDDGFGMGRDDLEKLGNRYFTSKCH 79 (1142)
T ss_pred CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCceeE-EEEEecCCCccHHHHHHHHhhhhhhhce
Confidence 599999999999999999999999999999999999999999999987764 9999999999999999999999999999
Q ss_pred cccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEE-EEEcCee-ec-ccccccCCCceEEEEEeeechhhhhh
Q 010846 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRV-SYRDGVM-ES-EPKACAAVKGTQIMVENLFYNMIARR 177 (499)
Q Consensus 101 ~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~-~~~~g~~-~~-~~~~~~~~~GTtV~v~~LF~n~PvRr 177 (499)
..+|+....||||||||||||+.+|.+.+.|+..+.+.+|++ .+..|.- .. +..-.+...||||+|+||||++||||
T Consensus 80 ~~ndl~~~~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPVRR 159 (1142)
T KOG1977|consen 80 SVNDLENPRTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPVRR 159 (1142)
T ss_pred eccccccccccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchhhh
Confidence 999999999999999999999999999999999999888863 2333432 11 12234667899999999999999999
Q ss_pred hhcc-CCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHhChhhhccceEeeecccCCCCcc
Q 010846 178 KTLQ-NSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSF 256 (499)
Q Consensus 178 k~lk-~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~ 256 (499)
++.. .+.+++.+|++.+.++|+.||.|+|++++.......|++++..+..+.+ +...
T Consensus 160 r~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eil----------------fr~k------ 217 (1142)
T KOG1977|consen 160 RLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREIL----------------FRYK------ 217 (1142)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhh----------------hhhc------
Confidence 9664 5778999999999999999999999999876656778877654432221 1111
Q ss_pred eEEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCC
Q 010846 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLN 336 (499)
Q Consensus 257 ~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~ 336 (499)
+|.+. +...+..+...++|||||+|-....++.+.++.+.-. -...|-++|++.||...|||-.+|+|+-|.|.+
T Consensus 218 ~~e~~----~s~~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR~~~-~~~~P~yvi~v~cp~~ly~vs~epakt~ieF~~ 292 (1142)
T KOG1977|consen 218 EFELS----SSEAHYNKTMGFLFVNKRLVLRTKKHKLIDQLLRKES-IICKPKYVINVQCPFCLYDVSMEPAKTLIEFQN 292 (1142)
T ss_pred ccccc----cchhccccccceeeecchhhhccchhhHHHHHHHhhh-eeccCcceeecccchhhhhhhcCcccchhhhhc
Confidence 12221 1122234566789999999999999999998877421 124577899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhc
Q 010846 337 QELIVEKIQSAVELKLRQ 354 (499)
Q Consensus 337 e~~I~~~I~~~i~~~L~~ 354 (499)
|+.++-+|++....+|.+
T Consensus 293 w~~~l~~I~~~~~~~~kk 310 (1142)
T KOG1977|consen 293 WDTLLFCIQEGVKMFLKK 310 (1142)
T ss_pred chhhHhHHHHhhhhhhhc
Confidence 999999999999888865
No 7
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.97 E-value=6.2e-30 Score=277.84 Aligned_cols=246 Identities=20% Similarity=0.250 Sum_probs=195.4
Q ss_pred CHHHHHHHHHHchhhcCCC-----ceEEEEeeCC--eeEEEEEECCCCCCcccHHhhhhh-cccCCcccccccccccccC
Q 010846 41 RPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCER-HTTSKLSKYEDLQSIKSMG 112 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At-----~I~I~i~~~g--~~~i~V~DNG~GI~~~dl~~~~~r-~~TSK~~~~~dl~~~~t~G 112 (499)
.+.++++|||+|||||+++ .|.|.+..+| ...|.|.|||+||++++++.++.+ |+|||+..+ +.+.|
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~-----~qS~G 110 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL-----IQSRG 110 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce-----eccCC
Confidence 4558999999999999986 6899887643 335999999999999999999999 888998653 47899
Q ss_pred ccchHHHhhhhhceE------EEEEEEcCCc---cEEEEEE--EcCeeecccccccCCCceEEE--EEeeechhhhhhhh
Q 010846 113 FRGEALASMTYVGHV------TVTTITKGHL---HGYRVSY--RDGVMESEPKACAAVKGTQIM--VENLFYNMIARRKT 179 (499)
Q Consensus 113 frGeaLaSis~vs~l------~I~Sr~~~~~---~~~~~~~--~~g~~~~~~~~~~~~~GTtV~--v~~LF~n~PvRrk~ 179 (499)
|+|+||+++..++++ .|.|+..++. .++.+.+ .+|++.....+.+.++||+|+ |++|||| |+
T Consensus 111 ~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~~~~~~~GT~Ie~~V~dLFyn---R~-- 185 (659)
T PRK14867 111 QQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKVREGFWRGTRVEGEFKEVTYN---RR-- 185 (659)
T ss_pred CCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeecccccCCCCCCCcEEEEEEeeceec---hh--
Confidence 999999988777654 7999986654 2444555 557764332456678999999 9999999 43
Q ss_pred ccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCce----eeeeecCCCCCHHHHHHHHhChhhhccceEeeecccCCCCc
Q 010846 180 LQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA----RADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSS 255 (499)
Q Consensus 180 lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~----~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~ 255 (499)
|.. |.++|+++||.||+++|.+...+.. +....+++ .+.+++.++||.. +.+|+.+....+ .
T Consensus 186 ------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp~--~~~e~~ph~~G~~-~~~Li~i~~~~~-~--- 251 (659)
T PRK14867 186 ------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIPE--KPEEMKPHPYGLT-TDELLYIARKTD-S--- 251 (659)
T ss_pred ------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecCc--CHHHHhhccCccc-hhhceehhccCC-c---
Confidence 444 8999999999999999999987431 22233333 7789999999999 888999975543 3
Q ss_pred ceEEEEEEEeCCCCCC-CCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCC
Q 010846 256 FVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPE 319 (499)
Q Consensus 256 ~~~~v~G~is~~~~~~-kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~ 319 (499)
+++.||+ .+.++. ++..++ +|.++.|.++|.+.|+.++|++++|+++|+|++||-
T Consensus 252 --~~v~gfl-~p~~sR~~~~~~~------~V~~~~l~~ai~~ay~~~l~~~~~P~~~L~l~i~~~ 307 (659)
T PRK14867 252 --SKVSSML-NSELSRVTTKRIK------ELEEYVLRDLLLENYRDSVFWDTVVSCYLNFDFTKY 307 (659)
T ss_pred --eEEEEEe-cchhccCCCCcEE------EEccHHHHHHHHHHHhhcccCCCcceEEEEEEeCcc
Confidence 8999998 665543 333443 777888999999999999999999999999999984
No 8
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.97 E-value=7.3e-30 Score=227.14 Aligned_cols=127 Identities=54% Similarity=0.916 Sum_probs=115.5
Q ss_pred CHHHHHHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCC
Q 010846 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPK 304 (499)
Q Consensus 225 s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk 304 (499)
++.++|..+||...+++|++++...+ + ....+++.||+|.|....++..|++|||||||.++.|.++|+++|+.++|+
T Consensus 1 ~~~~~i~~v~G~~~~~~li~i~~~~~-~-~~~~~~i~G~is~p~~~~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~l~~ 78 (127)
T cd03483 1 STKDNIRSVYGAAVANELIEVEISDD-D-DDLGFKVKGLISNANYSKKKIIFILFINNRLVECSALRRAIENVYANYLPK 78 (127)
T ss_pred CHHHHHHHHhCHHHHhcceEEecccC-C-cCCcEEEEEEEcCchhcCCCceEEEEEcCCEecCHHHHHHHHHHHHHhCcC
Confidence 46799999999999999999986541 0 002399999999998777778899999999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 010846 305 ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (499)
Q Consensus 305 ~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L~ 353 (499)
+++|+++|+|++||+.|||||||+|+||+|.+|+.|++.|+++|+++|+
T Consensus 79 ~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~ 127 (127)
T cd03483 79 GAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred CCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999873
No 9
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.96 E-value=1.3e-28 Score=216.74 Aligned_cols=118 Identities=35% Similarity=0.651 Sum_probs=103.9
Q ss_pred HHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCCCCC-CCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCc
Q 010846 230 IRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVA-KKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKP 308 (499)
Q Consensus 230 i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~-kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P 308 (499)
|+++||..++++|++++.+.+ . ++++||+|.|.... ++..|++|||||||+++.|.++|+++|+.+++++++|
T Consensus 1 I~~i~G~~~~~~l~~i~~~~~-~-----~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~~~~~~~~~P 74 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSEDE-D-----FSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYRERLPKGRYP 74 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEEEC-C-----EEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHHCTTCTTSB-
T ss_pred CeEeECHHHHhccEEEeccCC-C-----EEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHhhcccCCCCc
Confidence 678999999999999997665 5 99999999998654 4578999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 010846 309 FIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (499)
Q Consensus 309 ~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L~ 353 (499)
+++|+|+|||+.|||||||+|+||+|.+|++|+++|+++|.++|+
T Consensus 75 ~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 75 IFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999884
No 10
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.95 E-value=4.8e-28 Score=214.28 Aligned_cols=121 Identities=24% Similarity=0.445 Sum_probs=111.6
Q ss_pred HHHHHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCCCC-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCC
Q 010846 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 305 (499)
Q Consensus 227 ~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~-~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~ 305 (499)
++++..+||...+++|++++.+.+ . ++++||+|.|... +++..|++|||||||.++.|.++|+++|+.++|.+
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~~~-~-----~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~ 75 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEEAG-G-----LRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDVLHGG 75 (123)
T ss_pred HhHHHHHhCHHHHhccceEeccCC-C-----EEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHhccCC
Confidence 578999999999999999985443 3 9999999998754 34678999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 010846 306 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (499)
Q Consensus 306 ~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L~ 353 (499)
+||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|+++|+
T Consensus 76 ~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 76 RHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred CCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999874
No 11
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.95 E-value=1.8e-27 Score=213.32 Aligned_cols=124 Identities=23% Similarity=0.468 Sum_probs=112.0
Q ss_pred CHHHHHHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCC--CC-CCCceEEEEEcCcccCC-hHHHHHHHHHHHh
Q 010846 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN--YV-AKKTTMVLFVNDRLVEC-APLKRAVEIVYAA 300 (499)
Q Consensus 225 s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~--~~-~kk~~~~lFIN~R~V~~-~~L~kaI~~~y~~ 300 (499)
++.+++.++||...+.+|++++...+ . .+++++||++.|. .. .++..|++|||||||.+ +.|.++|+++|+.
T Consensus 1 ~l~~~i~~v~G~~~~~~li~i~~~~~-~---~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~ 76 (132)
T cd03485 1 DHKEALARVLGTAVAANMVPVQSTDE-D---PQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSS 76 (132)
T ss_pred CHHHHHHHHhCHHHHhccEEEeccCC-C---CcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHH
Confidence 46789999999999999999987662 1 2399999999983 33 35678999999999999 9999999999999
Q ss_pred cC---CCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 010846 301 TF---PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (499)
Q Consensus 301 ~l---pk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L 352 (499)
++ |+++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|++.+
T Consensus 77 ~~~~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 77 AYRKSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred HhccccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 99 99999999999999999999999999999999999999999999998765
No 12
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.95 E-value=4.9e-27 Score=212.74 Aligned_cols=122 Identities=20% Similarity=0.391 Sum_probs=112.4
Q ss_pred CHHHHHHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHh----
Q 010846 225 SRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA---- 300 (499)
Q Consensus 225 s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~---- 300 (499)
++.++++.+||..++++|++++.+.. + ++++||+|.++ ...+..|++|||||||.++.|.++|+++|+.
T Consensus 1 ~~~~~i~~i~G~~~~~~l~~v~~~~~-~-----~~v~G~is~p~-~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~ 73 (141)
T cd03486 1 SILSVFKQIYGLVLAQKLKEVSAKFQ-E-----YEVSGYISSEG-HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAV 73 (141)
T ss_pred CHHHHHHHHhChhhhccEEEeecccC-c-----EEEEEEEcCCC-CCCCceEEEEECCEEechHHHHHHHHHHHhhcccc
Confidence 36789999999999999999987654 4 99999999998 4567889999999999999999999999999
Q ss_pred ----cC-----------CCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 010846 301 ----TF-----------PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (499)
Q Consensus 301 ----~l-----------pk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L~ 353 (499)
.+ |+++||+++|+|+|||+.|||||||+|+||+|.+|+.|+++|+++|+++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 74 AKNKSSPQSKSSRRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred ccccccccccccccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHhC
Confidence 45 888999999999999999999999999999999999999999999999873
No 13
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.94 E-value=1.6e-26 Score=204.05 Aligned_cols=120 Identities=41% Similarity=0.667 Sum_probs=111.4
Q ss_pred HHHHHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCCC-CCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCC
Q 010846 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY-VAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKA 305 (499)
Q Consensus 227 ~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~-~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~ 305 (499)
.+++.++||..++++|++++.+.. . ++++||+|.++. ..++..|++|||||||..+.|.++|+++|+.+++.+
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~~~-~-----~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~ 75 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELESG-D-----FRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLPKG 75 (122)
T ss_pred HHHHHHHcCHHHHhcceEEeccCC-C-----EEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCcCC
Confidence 578999999999999999987654 4 999999999985 446678999999999999999999999999999999
Q ss_pred CCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 010846 306 SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (499)
Q Consensus 306 ~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L 352 (499)
++|+++|+|+|||+.+||||||+|+||+|.+|+.|++.|+++|+++|
T Consensus 76 ~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 76 RYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred CCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998765
No 14
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.94 E-value=3.9e-26 Score=206.99 Aligned_cols=127 Identities=24% Similarity=0.409 Sum_probs=110.3
Q ss_pred CHHHHHHHHhChhhhccceEeeecccC-----------CCCcceEEEEEEEeCC--CCC-CCCceEEEEEcCcccCChHH
Q 010846 225 SRLDSIRTVYGVSVASNLVQLEASEYN-----------DSSSFVFKMDGYVSNS--NYV-AKKTTMVLFVNDRLVECAPL 290 (499)
Q Consensus 225 s~~~~i~~ifG~~~a~~l~~i~~~~~~-----------~~~~~~~~v~G~is~~--~~~-~kk~~~~lFIN~R~V~~~~L 290 (499)
++.++|..+||..++++|+++....+. ......|+++||+|++ +.. .++..|++|||||||.++.|
T Consensus 1 ~~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l 80 (142)
T cd03484 1 DIKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKV 80 (142)
T ss_pred CHHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHH
Confidence 357899999999999999999865410 0001349999999998 432 34567999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 010846 291 KRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (499)
Q Consensus 291 ~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L 352 (499)
.++|+++|+.++ +++||+++|+|+|||+.|||||||+|+||+|.+|+.|++.|+++|++++
T Consensus 81 ~~aI~~~y~~~~-~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~ 141 (142)
T cd03484 81 AKLINEVYKSFN-SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELF 141 (142)
T ss_pred HHHHHHHHHHhc-CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHh
Confidence 999999999998 7899999999999999999999999999999999999999999999876
No 15
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.93 E-value=2.6e-24 Score=236.46 Aligned_cols=178 Identities=21% Similarity=0.346 Sum_probs=154.4
Q ss_pred ccccccChhHHHHhcCCcccc--CHHHHHHHHHHchhh---c-CCCceEEEEeeCCeeEEEEEECCCCCCccc-------
Q 010846 20 PKIHRLEESVVNRIAAGEVIQ--RPVSAVKELVENSLD---A-DATSINVVVKDGGLKLIQVSDDGHGIRYED------- 86 (499)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vi~--~~~~~vkELieNSlD---A-~At~I~I~i~~~g~~~i~V~DNG~GI~~~d------- 86 (499)
..|+.|..--.-|.+.|++|. +|.++|+|||+||+| | +|+.|.|.+..+| .|+|.|||+||+.++
T Consensus 7 ~~i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d~--~I~V~DnGrGIp~~~h~~~g~~ 84 (625)
T TIGR01055 7 KDIEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQDQ--SIEVFDNGRGMPVDIHPKEGVS 84 (625)
T ss_pred hhceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCCC--eEEEEecCCccCcccccccCCc
Confidence 469999999999999999995 589999999999999 9 6999999998775 599999999999998
Q ss_pred -HHhhh-hhcccCCcccccccccccccCccchHHHhhhhhce-EEEEEEEcCCccEEEEEEEcCeeecccc---cc-cCC
Q 010846 87 -LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPK---AC-AAV 159 (499)
Q Consensus 87 -l~~~~-~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs~-l~I~Sr~~~~~~~~~~~~~~g~~~~~~~---~~-~~~ 159 (499)
++.++ .+|+|||+.+ ++++ .|.||||+||++++.+|+ ++|.|+..+.. |++.|.+|....... ++ ...
T Consensus 85 ~~e~v~t~lhagsK~~~--~~~~-~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~~~ 159 (625)
T TIGR01055 85 AVEVILTTLHAGGKFSN--KNYH-FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGKRL 159 (625)
T ss_pred HHHHhhhcccccCCCCC--Ccce-ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCCCC
Confidence 88776 9999999975 3555 899999999999999997 99999987653 999999997733222 34 345
Q ss_pred CceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 160 KGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 160 ~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
.||+|++ +|.| +.|++...++..|.++++++|+.||+|.|.|...
T Consensus 160 ~GT~V~F------~PD~-~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~de 204 (625)
T TIGR01055 160 TGTSVHF------TPDP-EIFDSLHFSVSRLYHILRAKAVLCRGVEIEFEDE 204 (625)
T ss_pred CCeEEEE------EECH-HHCCCCccCHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 9999998 5999 7777777889999999999999999999999864
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.92 E-value=4.5e-25 Score=240.31 Aligned_cols=201 Identities=23% Similarity=0.344 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHchhhcCCC-----ceEEEEeeCCe-eEEEEEECCCCCCcccHHhhhhhcc-cCCcccccccccccccCc
Q 010846 41 RPVSAVKELVENSLDADAT-----SINVVVKDGGL-KLIQVSDDGHGIRYEDLPILCERHT-TSKLSKYEDLQSIKSMGF 113 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At-----~I~I~i~~~g~-~~i~V~DNG~GI~~~dl~~~~~r~~-TSK~~~~~dl~~~~t~Gf 113 (499)
.+..+|+|||+|||||+++ .|.|.+..++. ..|.|.|||+||++++++.++.+|+ |||+...+ .++||
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~-----~srG~ 120 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE-----QSRGQ 120 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc-----cCCCC
Confidence 4779999999999999876 68888876553 4799999999999999999999986 88986542 57899
Q ss_pred cchHHHhhhhhce------EEEEEEEcCCccEE--EEEEEcCe---ee--cccccccCCCceEEEEEeeechhhhhhhhc
Q 010846 114 RGEALASMTYVGH------VTVTTITKGHLHGY--RVSYRDGV---ME--SEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (499)
Q Consensus 114 rGeaLaSis~vs~------l~I~Sr~~~~~~~~--~~~~~~g~---~~--~~~~~~~~~~GTtV~v~~LF~n~PvRrk~l 180 (499)
+|+||+++..++. ++|+|++.++..|| .+.++.|+ .. .+..+...++||+|+|+ ||+|+|.|++
T Consensus 121 rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~k-- 197 (795)
T PRK14868 121 QGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQQ-- 197 (795)
T ss_pred CceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhhh--
Confidence 9999999887775 69999998776674 77777664 21 22345678899999999 9999999865
Q ss_pred cCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeec-CCCCCHHHHHHHH----hChhhhccceEeeecccCCCCc
Q 010846 181 QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHS-IATSSRLDSIRTV----YGVSVASNLVQLEASEYNDSSS 255 (499)
Q Consensus 181 k~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t-~~~~s~~~~i~~i----fG~~~a~~l~~i~~~~~~~~~~ 255 (499)
|.++|+++||+||+++|.+...+ ..+.+ ..+..+.+....+ ||..+ ..|+.+..... .
T Consensus 198 ---------I~eyl~r~Al~nP~a~f~l~~~~---~~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t~-~--- 260 (795)
T PRK14868 198 ---------LHDYIKHTAVVNPHARIELREPD---ESLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEATD-S--- 260 (795)
T ss_pred ---------HHHHHHHHHhhCCCeEEEEEECC---EEEEecccccccccCchhccCCCCCcCH-HHHHHHHhccC-C---
Confidence 78999999999999999999873 22444 4556788899999 99987 77887765443 3
Q ss_pred ceEEEEEEEeCCCC
Q 010846 256 FVFKMDGYVSNSNY 269 (499)
Q Consensus 256 ~~~~v~G~is~~~~ 269 (499)
+++.||+ .+.+
T Consensus 261 --~~l~gFL-~~ef 271 (795)
T PRK14868 261 --YSVSGFL-QEEF 271 (795)
T ss_pred --cEeHHhh-hhhh
Confidence 8899998 5544
No 17
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.92 E-value=7.4e-24 Score=232.48 Aligned_cols=258 Identities=18% Similarity=0.249 Sum_probs=183.6
Q ss_pred HHHHHHHHHchhhcC----CCceEEEEeeCCeeEEEEEECCCCCCcccHH--------hh-hhhcccCCccccccccccc
Q 010846 43 VSAVKELVENSLDAD----ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP--------IL-CERHTTSKLSKYEDLQSIK 109 (499)
Q Consensus 43 ~~~vkELieNSlDA~----At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~--------~~-~~r~~TSK~~~~~dl~~~~ 109 (499)
..+|+|||+||+||+ |+.|.|.++.+| .|+|.|||+||+.+..+ .+ ...|+++|+ +|.....
T Consensus 3 ~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g--~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kf---d~~~~k~ 77 (594)
T smart00433 3 HHLVDEIVDNAADEALAGYMDTIKVTIDKDN--SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKF---DDDAYKV 77 (594)
T ss_pred eEEEeeehhcccchhccCCCCEEEEEEeCCC--eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCC---CCCCccc
Confidence 457899999999998 999999999888 69999999999976532 33 345677765 4555567
Q ss_pred ccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEc-Ceeeccc--ccccCCCceEEEEEeeechhhhhhhhccCCch
Q 010846 110 SMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEP--KACAAVKGTQIMVENLFYNMIARRKTLQNSSD 185 (499)
Q Consensus 110 t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~-g~~~~~~--~~~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~ 185 (499)
++||||+||++++.+| +++|+|+..+. .|++.|.. |.....+ .++....||+|++ +|.|+++.+....
T Consensus 78 s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F------~Pd~~~F~~~~~~ 149 (594)
T smart00433 78 SGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVTF------KPDLEIFGMTTDD 149 (594)
T ss_pred cCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEEE------EECHHHhCCcccc
Confidence 9999999999999996 79999998855 48999965 8765433 3556789999994 5999998765577
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHhChhhh--ccceEeeecccCCCCcceEEEEEE
Q 010846 186 DYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVA--SNLVQLEASEYNDSSSFVFKMDGY 263 (499)
Q Consensus 186 e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~ifG~~~a--~~l~~i~~~~~~~~~~~~~~v~G~ 263 (499)
++..|.+.++.+|+.+|+|.|.|.+....... .......+.+-+..+.+.... ...+.+..... + ..++..
T Consensus 150 ~~~~i~~rl~~~A~l~pgl~i~l~der~~~~~-~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~~-~-----~~veva 222 (594)
T smart00433 150 DFELLKRRLRELAFLNKGVKITLNDERSDEEE-TFLFEGGIKDYVELLNKNKELLSPEPTYIEGEKD-N-----IRVEVA 222 (594)
T ss_pred hHHHHHHHHHHHHhcCCCcEEEEeccCCCcce-EEECCCCHHHHHHHHhCCCCcccCCCeEEEEEeC-C-----cEEEEE
Confidence 89999999999999999999999875311111 112345677777776654311 11122222212 2 556666
Q ss_pred EeCCCCCCCCceEEEEEcCcccCC---------hHHHHHHHHHHHhcCC-C---------CCCcEEEEEEEcCCCcee
Q 010846 264 VSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAATFP-K---------ASKPFIYMSIVLPPEHVD 322 (499)
Q Consensus 264 is~~~~~~kk~~~~lFIN~R~V~~---------~~L~kaI~~~y~~~lp-k---------~~~P~~~L~i~i~p~~vD 322 (499)
+.-.+. ....++-|+|+.+... ..|.++|+..++.... + ....++++++.+|.-..|
T Consensus 223 l~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~k~~~i~~~diregl~~vIsvki~~P~Fe 298 (594)
T smart00433 223 FQYTDG--YSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFE 298 (594)
T ss_pred EEccCC--CCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCCChhhHhhCeEEEEEEEEchheec
Confidence 654321 1356789999999863 4566666666654211 1 246789999999866555
No 18
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.91 E-value=1e-22 Score=224.60 Aligned_cols=281 Identities=18% Similarity=0.223 Sum_probs=190.6
Q ss_pred CCccccccChhHHHHhcCCccccC-----HHHHHHHHHHchhh---cC-CCceEEEEeeCCeeEEEEEECCCCCCcccHH
Q 010846 18 EPPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP 88 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi~~-----~~~~vkELieNSlD---A~-At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~ 88 (499)
....|+.|..----|.+.|++|.+ +..+|+|||+||+| || |+.|.|.++.+| .|+|.|||+||+.+..+
T Consensus 9 ~~~~i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g--~I~V~DnG~GIp~~~h~ 86 (638)
T PRK05644 9 DASQIQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG--SITVTDNGRGIPVDIHP 86 (638)
T ss_pred CHHHCeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC--cEEEEEeCccccCCccC
Confidence 445699999988899999999975 47899999999999 99 999999999887 59999999999986322
Q ss_pred --------h-hhhhcccCCcccccccccccccCccchHHHhhhhhce-EEEEEEEcCCccEEEEEEEcCeeeccccccc-
Q 010846 89 --------I-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKACA- 157 (499)
Q Consensus 89 --------~-~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs~-l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~- 157 (499)
. ++..|++||+.. .....|+||||+||++++.+|+ ++|+|+..+. +|++.|.+|.......++.
T Consensus 87 ~~ki~~~e~i~~~lhag~kfd~---~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~ 161 (638)
T PRK05644 87 KTGKPAVEVVLTVLHAGGKFGG---GGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGE 161 (638)
T ss_pred CCCCCchHHheeeecccCccCC---CcccccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCC
Confidence 2 245567776642 2234599999999999999997 9999997654 8999999998753323222
Q ss_pred -CCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCc---eeeeeecCCCCCHHHHHHHH
Q 010846 158 -AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA---ARADVHSIATSSRLDSIRTV 233 (499)
Q Consensus 158 -~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~---~~~~l~t~~~~s~~~~i~~i 233 (499)
...||+|++ +|.|+++ ++...++..|.+.++.+|+.+|+|.|.|..... ....++.. ..+.+-+..+
T Consensus 162 ~~~~GT~I~F------~Pd~~~F-~~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~--~Gl~dyv~~l 232 (638)
T PRK05644 162 TDETGTTVTF------KPDPEIF-ETTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYE--GGIKEYVEYL 232 (638)
T ss_pred cCCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcC--CCHHHHHHHH
Confidence 579999995 6999887 777778999999999999999999999987421 12224332 3455555443
Q ss_pred hChhh-h-ccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcC----
Q 010846 234 YGVSV-A-SNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATF---- 302 (499)
Q Consensus 234 fG~~~-a-~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~~y~~~l---- 302 (499)
-...- . ...+.+....+ + +.++.-+.-.+ .-...++-|+|+-+-.. ..++.+|..+...|.
T Consensus 233 ~~~~~~~~~~~i~~~~~~~-~-----~~veval~~~~--~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~l~~~~~k~~ 304 (638)
T PRK05644 233 NRNKEPLHEEPIYFEGEKD-G-----IEVEVAMQYND--GYSENILSFANNINTHEGGTHEEGFKTALTRVINDYARKNK 304 (638)
T ss_pred hcCCCcCCCCCeEEEeecc-C-----eEEEEEEEecC--CCceEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 32210 0 11122222111 1 34444332221 11234678999988653 234444443333322
Q ss_pred --CCC----------CCcEEEEEEEcCCCcee
Q 010846 303 --PKA----------SKPFIYMSIVLPPEHVD 322 (499)
Q Consensus 303 --pk~----------~~P~~~L~i~i~p~~vD 322 (499)
.+. ..=++++++.++--..|
T Consensus 305 ~~Kk~~~~i~~~dIregl~~vVsv~i~nP~F~ 336 (638)
T PRK05644 305 LLKEKDDNLTGEDVREGLTAVISVKHPEPQFE 336 (638)
T ss_pred cccccCCCCChhHHhhceEEEEEEecCCCccc
Confidence 111 12367888888844443
No 19
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.91 E-value=1e-22 Score=225.88 Aligned_cols=177 Identities=24% Similarity=0.315 Sum_probs=144.2
Q ss_pred cccccChhHHHHhcCCcccc-----CHHHHHHHHHHchhh---cC-CCceEEEEeeCCeeEEEEEECCCCCCcccH----
Q 010846 21 KIHRLEESVVNRIAAGEVIQ-----RPVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDL---- 87 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~-----~~~~~vkELieNSlD---A~-At~I~I~i~~~g~~~i~V~DNG~GI~~~dl---- 87 (499)
.|+.|..--.-|.+.|++|. .+..+|+|||+||+| || |+.|.|.++.+|. |+|.|||+||+.+-.
T Consensus 5 ~i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g~--I~V~DnG~GIp~~~h~~~k 82 (654)
T TIGR01059 5 SIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDGS--VTVEDNGRGIPVDIHPEEG 82 (654)
T ss_pred HCeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCCc--EEEEEeCCCcCccccCcCC
Confidence 58999988888999999994 478999999999999 99 9999999998874 999999999998621
Q ss_pred ----Hh-hhhhcccCCcccccccccccccCccchHHHhhhhhce-EEEEEEEcCCccEEEEEEEcCeeecc--cccccCC
Q 010846 88 ----PI-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESE--PKACAAV 159 (499)
Q Consensus 88 ----~~-~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs~-l~I~Sr~~~~~~~~~~~~~~g~~~~~--~~~~~~~ 159 (499)
+. ++..|++||+. |.....++||||+||++++.+|+ ++|+|+..+. .|++.|.+|..... ..++...
T Consensus 83 i~~~e~i~~~l~ag~kf~---~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~~~~l~~~~~~~~ 157 (654)
T TIGR01059 83 ISAVEVVLTVLHAGGKFD---KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIPLGPLEVVGETKK 157 (654)
T ss_pred CCchHHheeeecccCccC---CCcceecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCcccCceeccCCCC
Confidence 11 23445555543 22233799999999999999997 9999998654 38999999977542 2355678
Q ss_pred CceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 160 KGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 160 ~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
.||+|+ |++.|.+ +. +...++..|.+.++.+|+.||+|+|.|...
T Consensus 158 ~GT~V~----F~pdp~~--F~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~e 202 (654)
T TIGR01059 158 TGTTVR----FWPDPEI--FE-TTEFDFDILAKRLRELAFLNSGVKISLEDE 202 (654)
T ss_pred CCcEEE----EEEChHH--hC-CcccCHHHHHHHHHHhhccCCCeEEEEEee
Confidence 999999 8888884 33 566788999999999999999999999874
No 20
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.90 E-value=2.6e-22 Score=221.40 Aligned_cols=279 Identities=17% Similarity=0.196 Sum_probs=198.1
Q ss_pred CCccccccChhHHHHhcCCccc-----cCHHHHHHHHHHchhhc----CCCceEEEEeeCCeeEEEEEECCCCCCcccHH
Q 010846 18 EPPKIHRLEESVVNRIAAGEVI-----QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDLP 88 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi-----~~~~~~vkELieNSlDA----~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~ 88 (499)
....|+.|..--.-|.+.|++| .+|.++|+|||+||+|+ +|+.|.|.++.+| .|+|.|||+||+.++.+
T Consensus 9 ~~~~i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg--~I~V~DnGrGIP~~~~~ 86 (631)
T PRK05559 9 NADSIEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG--SVSVRDNGRGIPVGIHP 86 (631)
T ss_pred CHHHCeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC--cEEEEEcCCCCCccccc
Confidence 3446999999888899999997 46899999999999998 7999999999887 59999999999999888
Q ss_pred h--------hhhh-cccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecc---ccc
Q 010846 89 I--------LCER-HTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESE---PKA 155 (499)
Q Consensus 89 ~--------~~~r-~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~---~~~ 155 (499)
. ++.+ |++||+.. +.+. .+.||||+|+++++.+| .++|+|+..+. .|++.|.+|..... ..+
T Consensus 87 ~~~~~~~E~v~t~lhagsKf~~--~~yk-~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~~ 161 (631)
T PRK05559 87 EEGKSGVEVILTKLHAGGKFSN--KAYK-FSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVGT 161 (631)
T ss_pred ccCCcchheeeeeccccCccCC--cccc-ccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCcccccc
Confidence 6 5544 99999974 3444 89999999999999996 69999997654 38999998876432 223
Q ss_pred cc-CCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHh
Q 010846 156 CA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVY 234 (499)
Q Consensus 156 ~~-~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~if 234 (499)
++ ..+||+|++ +|.|+++ ++...++..|.+.++++|+.+|++.|.+...+ ....+... ..+.+.+..++
T Consensus 162 ~~~~~~GT~V~f------~PD~~iF-~~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~-~~~~f~~~--~gl~~~v~~~~ 231 (631)
T PRK05559 162 AGKRKTGTRVRF------WPDPKIF-DSPKFSPERLKERLRSKAFLLPGLTITLNDER-ERQTFHYE--NGLKDYLAELN 231 (631)
T ss_pred ccCCCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHHhhCCCeEEEEEeCC-ceEEEECC--ccHHHHHHHHh
Confidence 43 679999999 4998876 66667889999999999999999999999876 22334443 45788888887
Q ss_pred Chh-hh-cc-ceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCC---------hHHHHHHHHHHHhc-
Q 010846 235 GVS-VA-SN-LVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC---------APLKRAVEIVYAAT- 301 (499)
Q Consensus 235 G~~-~a-~~-l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~---------~~L~kaI~~~y~~~- 301 (499)
... .. .. .+.+..... + ..++--+.-.+. ....++-|+|+-+-.. ..|.++|+...+..
T Consensus 232 ~~~~~i~~~~~i~~~~~~~-~-----~~veval~~~~~--~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~~ 303 (631)
T PRK05559 232 EGKETLPEEFVGSFEGEAE-G-----EAVEWALQWTDE--GGENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKRN 303 (631)
T ss_pred CCCCccCCCCceEEeeeec-c-----ceEEEEEEecCC--CCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 542 11 01 112221111 1 233332222111 1236788999987653 23445555444321
Q ss_pred -CCC---------CCCcEEEEEEEcCCCce
Q 010846 302 -FPK---------ASKPFIYMSIVLPPEHV 321 (499)
Q Consensus 302 -lpk---------~~~P~~~L~i~i~p~~v 321 (499)
+.+ ...=++++++.++--..
T Consensus 304 l~k~~~~l~~~diregl~~vvsvki~~P~F 333 (631)
T PRK05559 304 LLPKGKKLEGEDVREGLAAVLSVKIPEPQF 333 (631)
T ss_pred ccccccCCChhhHhhceEEEEEEEcCCCcc
Confidence 111 12346778888874333
No 21
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.88 E-value=1.3e-21 Score=217.12 Aligned_cols=179 Identities=21% Similarity=0.310 Sum_probs=153.1
Q ss_pred CCccccccChhHHHHhcCCccccC------HHHHHHHHHHchhh---cC-CCceEEEEeeCCeeEEEEEECCCCCCcc--
Q 010846 18 EPPKIHRLEESVVNRIAAGEVIQR------PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYE-- 85 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi~~------~~~~vkELieNSlD---A~-At~I~I~i~~~g~~~i~V~DNG~GI~~~-- 85 (499)
....|+.|..--.-|.+.|++|.+ +.++|+|||+||+| || |+.|.|.++.+| .|+|.|||+|||.+
T Consensus 8 ~a~~i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg--sIsV~DnGrGIPvd~h 85 (756)
T PRK14939 8 GASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG--SVSVSDNGRGIPTDIH 85 (756)
T ss_pred CHHHCeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC--eEEEEEcCCcccCCcc
Confidence 344799999999999999999974 57899999999999 99 999999999887 59999999999997
Q ss_pred --------cHHhhhhhcccCCcccccccccccccCccchHHHhhhhhce-EEEEEEEcCCccEEEEEEEcCeeecccccc
Q 010846 86 --------DLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDGVMESEPKAC 156 (499)
Q Consensus 86 --------dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs~-l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~ 156 (499)
++. ++.+|++||+.+ |.+.+ +.||||+|++++..+|+ ++|+++..+. .|++.|.+|.........
T Consensus 86 ~~~g~~~~Elv-lt~lhAggKfd~--~~ykv-SgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~ 159 (756)
T PRK14939 86 PEEGVSAAEVI-MTVLHAGGKFDQ--NSYKV-SGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVV 159 (756)
T ss_pred cccCCchhhhe-eeeecccCCCCC--Ccccc-cCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCcccc
Confidence 333 458999999975 77777 99999999999999997 9999997665 399999999864432222
Q ss_pred --cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 157 --AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 157 --~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
....||+|++ +|.|+++ ++...++..|.+.++.+|..||++.|.+...
T Consensus 160 g~~~~~GT~V~F------~PD~~iF-~~~~~~~~~i~~rl~elA~lnpgl~i~l~de 209 (756)
T PRK14939 160 GETDKTGTEVRF------WPSPEIF-ENTEFDYDILAKRLRELAFLNSGVRIRLKDE 209 (756)
T ss_pred CCcCCCCcEEEE------EECHHHc-CCcccCHHHHHHHHHHHhhcCCCCEEEEecc
Confidence 2579999999 5999887 6666788999999999999999999999864
No 22
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.87 E-value=1.8e-21 Score=206.53 Aligned_cols=158 Identities=25% Similarity=0.367 Sum_probs=129.2
Q ss_pred cCHHHHHHHHHHchhhcCCC-----ceEEEEeeCC--eeEEEEEECCCCCCcccHHhhhhh-cccCCccccccccccccc
Q 010846 40 QRPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCER-HTTSKLSKYEDLQSIKSM 111 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At-----~I~I~i~~~g--~~~i~V~DNG~GI~~~dl~~~~~r-~~TSK~~~~~dl~~~~t~ 111 (499)
..+.++++|||+||+||+++ .|.|.+...+ ...|.|+|||+||++++++.++.+ |+|||+.. ...++
T Consensus 27 ~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~-----~~~s~ 101 (488)
T TIGR01052 27 RSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHR-----IIQSR 101 (488)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcccc-----ccccC
Confidence 46789999999999999876 6888887533 336999999999999999999988 78999864 24688
Q ss_pred CccchHHHhhhhhce------EEEEEEEcCCccEEEEEEE------cCeeecc-cccccCCCceEEEEEeeechhhhhhh
Q 010846 112 GFRGEALASMTYVGH------VTVTTITKGHLHGYRVSYR------DGVMESE-PKACAAVKGTQIMVENLFYNMIARRK 178 (499)
Q Consensus 112 GfrGeaLaSis~vs~------l~I~Sr~~~~~~~~~~~~~------~g~~~~~-~~~~~~~~GTtV~v~~LF~n~PvRrk 178 (499)
|++|+||+++..+|+ ++|+|++.++..||++.+. +|++... +.....++||+|+|+ |+|+|+|++
T Consensus 102 G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~--f~~~~~r~~ 179 (488)
T TIGR01052 102 GQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELE--FKGVSYRRS 179 (488)
T ss_pred CCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEE--ECCceeecc
Confidence 999999999988876 8999999988888888874 5665322 222223579999999 999999842
Q ss_pred hccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC
Q 010846 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 179 ~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
..+|.++++++|+.+|++.|.+.+..
T Consensus 180 --------k~~i~e~l~~~Al~nP~~~i~l~~~~ 205 (488)
T TIGR01052 180 --------KQGVYEYLRRTAVANPHAKIVLVDPD 205 (488)
T ss_pred --------HHHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 15899999999999999999999853
No 23
>PRK05218 heat shock protein 90; Provisional
Probab=99.85 E-value=5.1e-20 Score=202.82 Aligned_cols=283 Identities=19% Similarity=0.232 Sum_probs=190.6
Q ss_pred HHHhcCCccccCHHHHHHHHHHchhhc----------------CCC--ceEEEEeeCCeeEEEEEECCCCCCcccHHhhh
Q 010846 30 VNRIAAGEVIQRPVSAVKELVENSLDA----------------DAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILC 91 (499)
Q Consensus 30 ~~~i~ag~vi~~~~~~vkELieNSlDA----------------~At--~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~ 91 (499)
+..|.. ....+|..+++|||.||.|| ++. .|.|.++.+|. .|+|+|||+||+.+|+...+
T Consensus 16 l~ll~~-~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~-~i~I~DnG~GMt~eel~~~l 93 (613)
T PRK05218 16 LHLMIH-SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEAR-TLTISDNGIGMTREEVIENL 93 (613)
T ss_pred HHHHhh-hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCC-eEEEEECCCCCCHHHHHHHH
Confidence 333444 35568999999999999999 333 56676766665 49999999999999999999
Q ss_pred hhcccC-------CcccccccccccccCccchHHHhhhhhc-eEEEEEEEcC-CccEEEEEEEcCeeeccccccc-CCCc
Q 010846 92 ERHTTS-------KLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKG-HLHGYRVSYRDGVMESEPKACA-AVKG 161 (499)
Q Consensus 92 ~r~~TS-------K~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~-~~~~~~~~~~~g~~~~~~~~~~-~~~G 161 (499)
.++++| |+.... -.....+|.+|.++.|+..++ +|+|.||+.+ +..||++...+|... ...++. ..+|
T Consensus 94 ~~ia~Sg~~~f~~k~~~~~-~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~-~i~~~~~~~~G 171 (613)
T PRK05218 94 GTIAKSGTKEFLEKLKGDQ-KKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY-TIEEIEKEERG 171 (613)
T ss_pred HhhccccchhHHHHhhccc-ccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee-EEeECCCCCCC
Confidence 999998 342110 012346777777777877776 7999999977 667898888765432 222333 3799
Q ss_pred eEEEEEeeechhhhhhhhccCCchh---HHHHHHHHHHHH--hhCCCeEEEE---EECCceeeeeecCCCCCHHHHHHHH
Q 010846 162 TQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMA--IHHTNVSFSC---RKHGAARADVHSIATSSRLDSIRTV 233 (499)
Q Consensus 162 TtV~v~~LF~n~PvRrk~lk~~~~e---~~~I~~~v~~yA--l~~p~v~f~l---~~~g~~~~~l~t~~~~s~~~~i~~i 233 (499)
|+|+|. ++....+ ..+|.+++++|| +.+| |.|.. ...+.....|...+ .+..+.....
T Consensus 172 T~I~l~------------Lk~~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in~~~~~w~~~~-~~i~~~~~~~ 237 (613)
T PRK05218 172 TEITLH------------LKEDEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETINSASALWTRSK-SEITDEEYKE 237 (613)
T ss_pred cEEEEE------------ECcchhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeecCCccceecCC-ccccHHHHHH
Confidence 999994 3443433 488999999999 7777 77732 12233345565544 3667777788
Q ss_pred hChhhhcc----ceEeeecccCCCCcceEEEEEEEeCCCCC-------CCCceEEEEEcCcccCChHHHHHHHHHHHhcC
Q 010846 234 YGVSVASN----LVQLEASEYNDSSSFVFKMDGYVSNSNYV-------AKKTTMVLFVNDRLVECAPLKRAVEIVYAATF 302 (499)
Q Consensus 234 fG~~~a~~----l~~i~~~~~~~~~~~~~~v~G~is~~~~~-------~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~l 302 (499)
|+..++.. |..+.+..+ ..+.+.|++..|... ..+..+.+|||+|+|.+.. ...|
T Consensus 238 fy~~~~~~~~~pl~~i~~~~e-----~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~~---------~~lL 303 (613)
T PRK05218 238 FYKHLAHDFDDPLFWIHNNVE-----GPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDDA---------EELL 303 (613)
T ss_pred HhhhhcccccCCcEEEEcccC-----CceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCch---------hhhc
Confidence 77766444 777876544 348999998877543 2345678999999997643 2233
Q ss_pred CCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 010846 303 PKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (499)
Q Consensus 303 pk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L 352 (499)
|. |- .|+.--++.+.+=.||. || .+.++.++..|++.|...+
T Consensus 304 P~--wl-~Fv~GVVDs~dLplnvS---RE--~lq~~~~l~~i~~~l~~kv 345 (613)
T PRK05218 304 PE--YL-RFVKGVIDSEDLPLNVS---RE--ILQEDRVVKKIRKAITKKV 345 (613)
T ss_pred hH--HH-hheEEEeecCCCCCccC---HH--HHhcCHHHHHHHHHHHHHH
Confidence 32 11 12444556666666774 33 5666777777777765544
No 24
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.79 E-value=1.3e-18 Score=186.54 Aligned_cols=155 Identities=25% Similarity=0.337 Sum_probs=122.8
Q ss_pred HHHHHHHHHHchhhcCCC-----ceEEEEe----eCCeeEEEEEECCCCCCcccHHhhhhhc-ccCCccccccccccccc
Q 010846 42 PVSAVKELVENSLDADAT-----SINVVVK----DGGLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKSM 111 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At-----~I~I~i~----~~g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~~~t~ 111 (499)
+.++|+|||+||+||+++ .|.|.+. .++...|.|.|||.||++++++.++.+| ++||+... ..++
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~-----~~s~ 111 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL-----RQSR 111 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc-----ccCC
Confidence 589999999999999876 5888876 3456679999999999999999999885 88887532 3578
Q ss_pred CccchHHHhhhhhc------eEEEEEEEcCCccEEEEEEE------cCeeec-ccccccCCCceEEEEEeeechhhhhhh
Q 010846 112 GFRGEALASMTYVG------HVTVTTITKGHLHGYRVSYR------DGVMES-EPKACAAVKGTQIMVENLFYNMIARRK 178 (499)
Q Consensus 112 GfrGeaLaSis~vs------~l~I~Sr~~~~~~~~~~~~~------~g~~~~-~~~~~~~~~GTtV~v~~LF~n~PvRrk 178 (499)
|++|+||++...++ .++|.|+..++..+|.+.+. .|.+.. ...+...++||+|.|. ||.+++.|
T Consensus 112 G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~~-- 188 (535)
T PRK04184 112 GQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYRA-- 188 (535)
T ss_pred CCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChhh--
Confidence 99999998876654 37899998877657777663 244322 1223567899999999 88888854
Q ss_pred hccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC
Q 010846 179 TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 179 ~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
.++|.++++++|+++|++.|.+.+.+
T Consensus 189 --------~~~I~e~i~r~Al~nP~~~~~l~~~~ 214 (535)
T PRK04184 189 --------KQRIYEYLKRTAIVNPHARITFKDPD 214 (535)
T ss_pred --------HHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 46789999999999999999999653
No 25
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.72 E-value=2.3e-17 Score=140.92 Aligned_cols=101 Identities=33% Similarity=0.492 Sum_probs=90.5
Q ss_pred HHHHHHHhChhhhccceEeeecccCCCCcceEEEEEEEeCCCCC-CCCceEEEEEcCcccC-ChHHHHHHHHHHHhcC--
Q 010846 227 LDSIRTVYGVSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNYV-AKKTTMVLFVNDRLVE-CAPLKRAVEIVYAATF-- 302 (499)
Q Consensus 227 ~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~-~kk~~~~lFIN~R~V~-~~~L~kaI~~~y~~~l-- 302 (499)
.+++..+||...+..++.++.... . +.++|+++.++.. .++..|++|||||++. ...+.++|.++|..++
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~~-~-----~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~~ 75 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGESD-G-----FRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALNG 75 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEeccCC-C-----EEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhcc
Confidence 578999999998888998876544 4 9999999998764 3456799999999999 9999999999999999
Q ss_pred -CCCCCcEEEEEEEcCCCceecccCCCCCeEe
Q 010846 303 -PKASKPFIYMSIVLPPEHVDVNVHPTKREVS 333 (499)
Q Consensus 303 -pk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~ 333 (499)
+.+++|+++|+|+||++.+||||||+|++|.
T Consensus 76 ~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 76 DDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred cCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 9999999999999999999999999999984
No 26
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.59 E-value=5e-16 Score=140.05 Aligned_cols=101 Identities=33% Similarity=0.520 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHchhhcCCCceEEEEeeC--CeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH-
Q 010846 41 RPVSAVKELVENSLDADATSINVVVKDG--GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA- 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At~I~I~i~~~--g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea- 117 (499)
+|..||+|||+||+||+|+.|.|.+... +...|.|.|||.||+.++|..++..+.++|... ....++|++|.+
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~----~~~~~~G~~G~G~ 77 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE----KDRQSIGRFGIGL 77 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH----HHGGGGGGGTSGC
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch----hhhhcCCCcceEH
Confidence 4578999999999999999999999763 445799999999999999999887777777421 134678999888
Q ss_pred -HHhhhhhceEEEEEEEcCCccEEEEEEE
Q 010846 118 -LASMTYVGHVTVTTITKGHLHGYRVSYR 145 (499)
Q Consensus 118 -LaSis~vs~l~I~Sr~~~~~~~~~~~~~ 145 (499)
+|.+.....++|+|++.+...+|.+.+.
T Consensus 78 k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 78 KLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp GGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred HHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 4556655689999999998888887765
No 27
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.58 E-value=2.2e-14 Score=147.48 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=119.6
Q ss_pred ccCHHHHHHHHHHchhhcCC-----CceEEEEeeC--CeeEEEEEECCCCCCcccHHhhhh-hcccCCcccccccccccc
Q 010846 39 IQRPVSAVKELVENSLDADA-----TSINVVVKDG--GLKLIQVSDDGHGIRYEDLPILCE-RHTTSKLSKYEDLQSIKS 110 (499)
Q Consensus 39 i~~~~~~vkELieNSlDA~A-----t~I~I~i~~~--g~~~i~V~DNG~GI~~~dl~~~~~-r~~TSK~~~~~dl~~~~t 110 (499)
+-++.++|+|||+|||||.- ..|.|.|+.. +...+.|+|||.||+.+.++.+|. -++.||++...+-.+...
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred hhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhcccccc
Confidence 44788999999999999963 4688888653 455799999999999999999874 489999975555555666
Q ss_pred cCccchHHHhhhhhce-EEEEEEEcCCccEEEEEEE------cCeeecc--cccccCCCceEEEEEeeechhhhhhhhcc
Q 010846 111 MGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYR------DGVMESE--PKACAAVKGTQIMVENLFYNMIARRKTLQ 181 (499)
Q Consensus 111 ~GfrGeaLaSis~vs~-l~I~Sr~~~~~~~~~~~~~------~g~~~~~--~~~~~~~~GTtV~v~~LF~n~PvRrk~lk 181 (499)
.|-.|..|+|...-++ +.|.|+|.++..+|..... .+.+... .....+++||+|.++ |=.++..+++
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~~~--- 189 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRAKR--- 189 (538)
T ss_pred ccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhhcc---
Confidence 6677777888877775 9999999987777654432 1222211 223456899999997 3333333221
Q ss_pred CCchhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 182 NSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 182 ~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
+-+.+.+++-|+.+|+..|.|+.-
T Consensus 190 ------qgi~eYlkrtaiinPhA~I~l~dP 213 (538)
T COG1389 190 ------QGIYEYLKRTAIINPHARIVLKDP 213 (538)
T ss_pred ------cCHHHHHHHHhhcCCceEEEEECC
Confidence 126788999999999999999874
No 28
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.50 E-value=1.7e-12 Score=143.44 Aligned_cols=179 Identities=21% Similarity=0.222 Sum_probs=137.5
Q ss_pred CccccccChhHHHHhcCCccccC-----HHHHHHHHHHchhh----cCCCceEEEEeeCCeeEEEEEECCCCCCcccH--
Q 010846 19 PPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD----ADATSINVVVKDGGLKLIQVSDDGHGIRYEDL-- 87 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi~~-----~~~~vkELieNSlD----A~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl-- 87 (499)
...|+.|..--.-|.+.|++|.+ +...+.|+|+||+| ..|+.|.|.+..+| .|+|.|||.|||.+--
T Consensus 7 ~~~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg--sitV~DnGrGIPv~~h~~ 84 (637)
T TIGR01058 7 ADAIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN--SITVQDDGRGIPTGIHQD 84 (637)
T ss_pred HHHCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC--eEEEEECCCcccCcccCc
Confidence 34699999999999999999975 57899999999999 45999999999877 5999999999997532
Q ss_pred ------Hhh-hhhcccCCcccccccccccccCccchHHHhhhhhce-EEEEEEEcCCccEEEEEEEcC-eeecccc--cc
Q 010846 88 ------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVGH-VTVTTITKGHLHGYRVSYRDG-VMESEPK--AC 156 (499)
Q Consensus 88 ------~~~-~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs~-l~I~Sr~~~~~~~~~~~~~~g-~~~~~~~--~~ 156 (499)
+.+ +.-|+.+|+.+ -.-..+-|++|.+++....+|. ++|+++..+. -|...|.+| .....++ ..
T Consensus 85 ~~~~~~E~v~t~LhaGgkfd~---~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk--~~~q~f~~Gg~~~~~l~~~~~ 159 (637)
T TIGR01058 85 GNISTVETVFTVLHAGGKFDQ---GGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQ--IYQQRFENGGKIVQSLKKIGT 159 (637)
T ss_pred CCCccceeEEEEecccCcCCC---CcccccCCcccccccccceeeceEEEEEEECCE--EEEEEEecCCcCcCCcccccC
Confidence 222 34577788753 2223667999999999999995 8999886543 578899876 5433221 23
Q ss_pred cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 157 ~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
...+||+|++. |....+ ....-.+..|.+.++.+|..+|++.+.+...
T Consensus 160 ~~~~GT~V~F~------PD~~iF-~~~~f~~d~l~~RlrelA~Ln~GL~I~l~de 207 (637)
T TIGR01058 160 TKKTGTLVHFH------PDPTIF-KTTQFNSNIIKERLKESAFLLKKLKLTFTDK 207 (637)
T ss_pred CCCCceEEEEE------eCHHHc-CCCccCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 45699999997 665443 3333456779999999999999999999874
No 29
>PRK14083 HSP90 family protein; Provisional
Probab=99.46 E-value=2e-12 Score=141.85 Aligned_cols=282 Identities=14% Similarity=0.139 Sum_probs=164.4
Q ss_pred CCccccCHHHHHHHHHHchhhcCCC----------ceEEEE-eeCCeeEEEEEECCCCCCcccHHhhh-hhcccCCcccc
Q 010846 35 AGEVIQRPVSAVKELVENSLDADAT----------SINVVV-KDGGLKLIQVSDDGHGIRYEDLPILC-ERHTTSKLSKY 102 (499)
Q Consensus 35 ag~vi~~~~~~vkELieNSlDA~At----------~I~I~i-~~~g~~~i~V~DNG~GI~~~dl~~~~-~r~~TSK~~~~ 102 (499)
+.....+|..+|+|||.||.||++. .|.|.+ +.+ ...|.|+|||.||+.+++...+ .-...+|....
T Consensus 17 ~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~-~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~ 95 (601)
T PRK14083 17 SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAG-GGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN 95 (601)
T ss_pred HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCC-CcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh
Confidence 3456678999999999999999875 788887 433 4579999999999999998754 33444453311
Q ss_pred cccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEE-cCeeecccc-cccCCCceEEEEEeeechhhhhhhh
Q 010846 103 EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYR-DGVMESEPK-ACAAVKGTQIMVENLFYNMIARRKT 179 (499)
Q Consensus 103 ~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~-~g~~~~~~~-~~~~~~GTtV~v~~LF~n~PvRrk~ 179 (499)
-........|..|.++.|.-.+| +++|.||..+...+|.+.-. +|....+.. .....+||+|++.-- +.-+.+
T Consensus 96 ~~~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l~----~d~~~~ 171 (601)
T PRK14083 96 LGFARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRPR----PDAEEW 171 (601)
T ss_pred hcccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEec----Cchhhh
Confidence 00112356899999999988888 69999999755556666543 344422221 234579999999721 111111
Q ss_pred ccCCchhHHHHHHHHHHHHhhCC-CeEEEEE--ECCceeeeeecCCCC-C-----HHHHHHHHhChhhhccceEeeeccc
Q 010846 180 LQNSSDDYTKIVDLLSRMAIHHT-NVSFSCR--KHGAARADVHSIATS-S-----RLDSIRTVYGVSVASNLVQLEASEY 250 (499)
Q Consensus 180 lk~~~~e~~~I~~~v~~yAl~~p-~v~f~l~--~~g~~~~~l~t~~~~-s-----~~~~i~~ifG~~~a~~l~~i~~~~~ 250 (499)
+ +-.+|.+++++|+-+-| .|.+... ..+...+.|.-.+.. + +.+-.+.+|+. .-|..+.+..+
T Consensus 172 ~-----~~~~i~~li~~ys~~i~~pI~l~~~~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~~---~Pl~~ih~~~e 243 (601)
T PRK14083 172 L-----ERETVEELAKKYGSLLPVPIRVEGEKGGVNETPPPWTRDYPDPETRREALLAYGEELLGF---TPLDVIPLDVP 243 (601)
T ss_pred c-----cHHHHHHHHHHHhccCCCCcccCCceeeecCCCCCccCCccccCccHHHHHHHHHHhcCC---Cchheeeeccc
Confidence 1 33678888999975443 3333221 122334444433221 2 55666777761 22444444333
Q ss_pred CCCCcceEEEEEEEe-CCC--CCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCC
Q 010846 251 NDSSSFVFKMDGYVS-NSN--YVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHP 327 (499)
Q Consensus 251 ~~~~~~~~~v~G~is-~~~--~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhP 327 (499)
. ....|.+- .|. ....+...-||+|+-+|.... ...+|. | ..++.--++.+.+-.||.=
T Consensus 244 -~-----~~~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d~~---------~~lLP~--w-l~FvrGVVDS~DLpLNvSR 305 (601)
T PRK14083 244 -S-----GGLEGVAYVLPYAVSPAARRKHRVYLKRMLLSEEA---------ENLLPD--W-AFFVRCVVNTDELRPTASR 305 (601)
T ss_pred -c-----hhheEEEEecCCCCCccccCceEEEeeeeEeecch---------hhhhHH--H-HHHheeeeecCCCCCccCH
Confidence 2 22344332 221 111233456999999886542 122231 1 1134445666666677743
Q ss_pred CCCeEecCChhHHHHHHHHHHHHHH
Q 010846 328 TKREVSLLNQELIVEKIQSAVELKL 352 (499)
Q Consensus 328 tK~eV~F~~e~~I~~~I~~~i~~~L 352 (499)
| .+.++.++..|++.|.+.+
T Consensus 306 ---E--~LQ~~~~l~~ir~~i~kki 325 (601)
T PRK14083 306 ---E--ALYEDDALAAVREELGEAI 325 (601)
T ss_pred ---H--HHccCHHHHHHHHHHHHHH
Confidence 3 4556667777776665544
No 30
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.45 E-value=2.1e-12 Score=138.49 Aligned_cols=179 Identities=23% Similarity=0.325 Sum_probs=139.1
Q ss_pred CccccccChhHHHHhcCCcccc------CHHHHHHHHHHchhh---cC-CCceEEEEeeCCeeEEEEEECCCCCCccc--
Q 010846 19 PPKIHRLEESVVNRIAAGEVIQ------RPVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYED-- 86 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi~------~~~~~vkELieNSlD---A~-At~I~I~i~~~g~~~i~V~DNG~GI~~~d-- 86 (499)
...|+.|..--.-|.+.|++|. .+.+.+.|.|+||+| || |+.|.|.+..+| .|+|.|||.|||.+-
T Consensus 8 a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~--sisV~DnGRGIPvdiH~ 85 (635)
T COG0187 8 ASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG--SISVEDNGRGIPVDIHP 85 (635)
T ss_pred HhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC--eEEEEECCCCCccccCC
Confidence 4469999999999999999986 367799999999999 55 899999998887 599999999999875
Q ss_pred ------HHhh-hhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeeccccc---
Q 010846 87 ------LPIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA--- 155 (499)
Q Consensus 87 ------l~~~-~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~--- 155 (499)
++.+ ..-|+.+|+.. | .--.+-|.+|.+.+-..++| ++.|+.+..+. -|+..|.+|....+...
T Consensus 86 ~~~~~~vEvI~T~LHAGGKFd~--~-~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk--~y~q~f~~G~~~~~l~~ig~ 160 (635)
T COG0187 86 KEKVSAVEVIFTVLHAGGKFDN--D-SYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYRQRFERGVPVTPLEVIGS 160 (635)
T ss_pred CCCCCceEEEEEeeccCcccCC--C-ccEeecCCCccceEEEecccceEEEEEEECCE--EEEEEEeCCCcCCCceeccc
Confidence 2222 35588889864 2 23367789999977777888 58888888754 58999999877422211
Q ss_pred c-cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 156 C-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 156 ~-~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
| ...+||+|++. |.-. .|.+....+..|...++.+|-.++++.+.+.+.
T Consensus 161 ~~~~~~GT~V~F~------PD~~-iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~ 210 (635)
T COG0187 161 TDTKKTGTKVRFK------PDPE-IFGETEFDYEILKRRLRELAFLNKGVKITLTDE 210 (635)
T ss_pred CCCCCCccEEEEE------cChH-hcCCcccCHHHHHHHHHHHhccCCCCEEEEEec
Confidence 1 23679999986 5443 343455678899999999999999999988774
No 31
>PTZ00130 heat shock protein 90; Provisional
Probab=99.28 E-value=1.2e-10 Score=129.85 Aligned_cols=160 Identities=19% Similarity=0.272 Sum_probs=104.5
Q ss_pred cCCccccCHHHHHHHHHHchhhcCC----------------CceEEEEeeC-CeeEEEEEECCCCCCcccHHhhhhhccc
Q 010846 34 AAGEVIQRPVSAVKELVENSLDADA----------------TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTT 96 (499)
Q Consensus 34 ~ag~vi~~~~~~vkELieNSlDA~A----------------t~I~I~i~~~-g~~~i~V~DNG~GI~~~dl~~~~~r~~T 96 (499)
-++....++..+|+|||.||.||.+ +.+.|+|..+ .-..|+|.|||+||+.+++..-...-+.
T Consensus 81 ii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~ 160 (814)
T PTZ00130 81 IVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAK 160 (814)
T ss_pred HhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhcc
Confidence 3445677889999999999999985 2445555432 1236999999999999998654433333
Q ss_pred CCcccc-cccc----cccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEc-Ceeecccc--cccCCCceEEEEE
Q 010846 97 SKLSKY-EDLQ----SIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPK--ACAAVKGTQIMVE 167 (499)
Q Consensus 97 SK~~~~-~dl~----~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~-g~~~~~~~--~~~~~~GTtV~v~ 167 (499)
|--..| +.+. ...-+|..|.+++|.-.|| +|+|.||..+. .+|.+.-.+ |.....+. .....+||+|++.
T Consensus 161 Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~-~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~Lh 239 (814)
T PTZ00130 161 SGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNND-EQYIWESTADAKFTIYKDPRGSTLKRGTRISLH 239 (814)
T ss_pred cccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCC-ceEEEEECCCCcEEEEECCCCCCCCCCcEEEEE
Confidence 321122 1111 2357899999999999998 69999998763 467776543 33322221 1234699999996
Q ss_pred eeechhhhhhhhccCCch---hHHHHHHHHHHHHhhCC-CeEE
Q 010846 168 NLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSF 206 (499)
Q Consensus 168 ~LF~n~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~p-~v~f 206 (499)
++.... +-.+|..++++|+-+-+ .|.+
T Consensus 240 ------------Lked~~efl~~~~ik~likkYS~fI~~PI~l 270 (814)
T PTZ00130 240 ------------LKEDATNLMNDKKLVDLISKYSQFIQYPIYL 270 (814)
T ss_pred ------------ECCchhhhccHHHHHHHHHHhhccCCCCEEE
Confidence 222222 33679999999996544 3444
No 32
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=99.26 E-value=1.5e-10 Score=128.70 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=99.7
Q ss_pred cccCHHHHHHHHHHchhhcCC----------------CceEEEEe--eCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 38 VIQRPVSAVKELVENSLDADA----------------TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 38 vi~~~~~~vkELieNSlDA~A----------------t~I~I~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
...++...|+|||.||.||.. ..+.|.+. ..+ ..|.|.|||.||+.+|+......-+.|=-
T Consensus 22 lYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~-~~L~I~DnGiGMt~edl~~~LgtIa~SGt 100 (701)
T PTZ00272 22 FYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKEN-KTLTVEDNGIGMTKADLVNNLGTIARSGT 100 (701)
T ss_pred ccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCC-CEEEEEECCCCCCHHHHHHHhhhhhhcch
Confidence 445667889999999999952 23445553 343 46999999999999997654433232200
Q ss_pred cccc-cc---ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEc-Ceeeccccc-ccCCCceEEEEEeeech
Q 010846 100 SKYE-DL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKA-CAAVKGTQIMVENLFYN 172 (499)
Q Consensus 100 ~~~~-dl---~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~-g~~~~~~~~-~~~~~GTtV~v~~LF~n 172 (499)
..|- .+ ......|..|.+.+|.-.|| +|+|+||..+. .+|.+..++ |.....+.+ ....+||+|++.
T Consensus 101 ~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~----- 174 (701)
T PTZ00272 101 KAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITLH----- 174 (701)
T ss_pred HHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEEE-----
Confidence 0010 01 12457899999999988888 59999998764 578877643 333222222 123699999996
Q ss_pred hhhhhhhccCCch---hHHHHHHHHHHHHhhCC-CeEE
Q 010846 173 MIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSF 206 (499)
Q Consensus 173 ~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~p-~v~f 206 (499)
++.... +-.+|..+|++|+-+-+ .|.+
T Consensus 175 -------Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l 205 (701)
T PTZ00272 175 -------LKEDQMEYLEPRRLKELIKKHSEFIGYDIEL 205 (701)
T ss_pred -------ECCchHHhccHHHHHHHHHHhccccCcceEE
Confidence 222222 23689999999996544 3444
No 33
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.5e-10 Score=125.09 Aligned_cols=279 Identities=19% Similarity=0.254 Sum_probs=158.7
Q ss_pred cccCHHHHHHHHHHchhhcC------------------CCceEEEEeeCCeeEEEEEECCCCCCcccHHhh-h---hhcc
Q 010846 38 VIQRPVSAVKELVENSLDAD------------------ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPIL-C---ERHT 95 (499)
Q Consensus 38 vi~~~~~~vkELieNSlDA~------------------At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~-~---~r~~ 95 (499)
+...+.-.++|||.||-||- .-.|.|.++.+. +.++|.|||.||+++|+... + .-++
T Consensus 24 lYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~-kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 24 LYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDN-KTLTISDNGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred ccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccC-CEEEEEeCCCCCCHHHHHHHHHHhhhccH
Confidence 34467778999999999983 135666666553 46999999999999997532 2 1111
Q ss_pred cCCccccc-ccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEc-CeeecccccccCC-CceEEEEEeeec
Q 010846 96 TSKLSKYE-DLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRD-GVMESEPKACAAV-KGTQIMVENLFY 171 (499)
Q Consensus 96 TSK~~~~~-dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~GTtV~v~~LF~ 171 (499)
-..+.... |-....-.|..|.+++|--.|| +|+|.||.+++..+|.+.-++ |.....+.. ... +||+|+..
T Consensus 103 ~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~~~-~~~~~GT~I~L~---- 177 (623)
T COG0326 103 KEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVEDID-KEPRRGTEITLH---- 177 (623)
T ss_pred HHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEeecc-CCCCCCcEEEEE----
Confidence 11111111 1123456899999999999999 599999999988888776543 333322221 223 69999997
Q ss_pred hhhhhhhhccCCch---hHHHHHHHHHHHHhhCC-CeEEEEEE-----------CCceeeeeecCCCCCHHHHHHHHhCh
Q 010846 172 NMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSFSCRK-----------HGAARADVHSIATSSRLDSIRTVYGV 236 (499)
Q Consensus 172 n~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~p-~v~f~l~~-----------~g~~~~~l~t~~~~s~~~~i~~ifG~ 236 (499)
++.... +--+|.+++.+|+-|-+ -|.+.... .++.+..|.-++..=..+.....|-.
T Consensus 178 --------Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~ 249 (623)
T COG0326 178 --------LKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEWETINKAKALWTRNKSEITDEEYKEFYKH 249 (623)
T ss_pred --------ECCchHHHhhhhHHHHHHHHHhcccccceEEeeeccccccchhHHHhccccCcccCChhhCChHHHHHHHHH
Confidence 222121 23579999999998765 45555432 12234455544332222333333321
Q ss_pred ---hhhccceEeeecccCCCCcceEEEEEEEeCCC---C---C-CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCC
Q 010846 237 ---SVASNLVQLEASEYNDSSSFVFKMDGYVSNSN---Y---V-AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKAS 306 (499)
Q Consensus 237 ---~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~---~---~-~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~ 306 (499)
....-|..+....+ ..+...+++--|. + + -+|..+-||||+-+|.... ..++|.
T Consensus 250 ~~~d~~~Pl~~~h~~~E-----G~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~Dd~---------~~llP~-- 313 (623)
T COG0326 250 LAHDFDDPLLWIHNKVE-----GRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMDDA---------EDLLPN-- 313 (623)
T ss_pred hhcccCCCeEEEecccc-----cceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeCCh---------hhhhhH--
Confidence 11222444443333 2355555554332 2 1 1244567999999986532 122231
Q ss_pred CcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHH
Q 010846 307 KPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKL 352 (499)
Q Consensus 307 ~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L 352 (499)
| +.++.--|+...+=.||. || .+.++.++..|+++|.+.+
T Consensus 314 y-l~Fv~GvIDS~DLpLNvS---RE--~LQ~n~~l~~Irk~l~kkv 353 (623)
T COG0326 314 Y-LRFVRGVIDSEDLPLNVS---RE--ILQQNRILAAIRKALTKKV 353 (623)
T ss_pred H-HhhheeeeecCCCCcccC---HH--HHccCHHHHHHHHHHHHHH
Confidence 1 112233344444445663 33 4666777887777776554
No 34
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=99.24 E-value=1.1e-11 Score=138.54 Aligned_cols=182 Identities=20% Similarity=0.306 Sum_probs=137.7
Q ss_pred CccccccChhHHHHhcCCccccC-----HHHHHHHHHHchhh---cC-CCceEEEEeeCCeeEEEEEECCCCCCcccHH-
Q 010846 19 PPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLP- 88 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi~~-----~~~~vkELieNSlD---A~-At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~- 88 (499)
...|+.|..--.-|.+.|++|.+ +.+.|.|+|+||+| || |+.|.|.+..+| .|+|.|||.|||.+--+
T Consensus 102 a~~I~vLeGLEaVRkRPGMYIGst~~~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg--sItV~DnGRGIPvd~h~k 179 (903)
T PTZ00109 102 ADDIVVLEGLEAVRKRPGMYIGNTDEKGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG--SVEISDNGRGIPCDVSEK 179 (903)
T ss_pred hHhCeehhccHHHhcCCCceeCCCCCCcceEEEEEEeeccchhhccCCCcEEEEEEcCCC--eEEEEeCCcccccccccc
Confidence 44699999999999999999975 57799999999999 45 899999998777 59999999999986432
Q ss_pred -------hh-hhhcccCCcccc-------------cccc------------------------cccccCccchHHHhhhh
Q 010846 89 -------IL-CERHTTSKLSKY-------------EDLQ------------------------SIKSMGFRGEALASMTY 123 (499)
Q Consensus 89 -------~~-~~r~~TSK~~~~-------------~dl~------------------------~~~t~GfrGeaLaSis~ 123 (499)
.+ +.-|+.+|+..- .|.. -..+-|.+|.+++...+
T Consensus 180 ~g~s~~E~VlT~LhAGGKF~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNA 259 (903)
T PTZ00109 180 TGKSGLETVLTVLHSGGKFQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNA 259 (903)
T ss_pred CCCcceeEEEEEeccCccccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeee
Confidence 22 345788888541 0111 12578899999988888
Q ss_pred hc-eEEEEEEEcCCccEEEEEEEcCeeecccc--ccc-CCCceEEEEEeeechhhh-hhhhccC-Cc-------------
Q 010846 124 VG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACA-AVKGTQIMVENLFYNMIA-RRKTLQN-SS------------- 184 (499)
Q Consensus 124 vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~--~~~-~~~GTtV~v~~LF~n~Pv-Rrk~lk~-~~------------- 184 (499)
+| .++|+++..+. -|.+.|.+|.....++ .+. ..+||+|++. |. .. .|.. ..
T Consensus 260 LS~~l~VeV~RdGK--~y~q~F~rG~~v~pLkvig~~~~~tGT~VtF~------PD~~~-IF~~~~~~~~~~~~~~~~~~ 330 (903)
T PTZ00109 260 LSSFLKVDVFKGGK--IYSIELSKGKVTKPLSVFSCPLKKRGTTIHFL------PDYKH-IFKTHHQHTETEEEEGCKNG 330 (903)
T ss_pred ccCeEEEEEEECCE--EEEEEeCCCcccCCccccCCcCCCCceEEEEE------eCcch-hcCccccccccccccccccc
Confidence 88 58888888654 6899999997643322 233 4689999997 54 32 2322 11
Q ss_pred hhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 185 DDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 185 ~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
-.+..|.+.++.+|..+|++.|.+.+.
T Consensus 331 F~~d~L~~RLrElAfLNpGL~I~L~De 357 (903)
T PTZ00109 331 FNLDLIKNRIHELSYLNPGLTFYLVDE 357 (903)
T ss_pred cCHHHHHHHHHHHhccCCCcEEEEEec
Confidence 256789999999999999999999864
No 35
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=99.17 E-value=7.6e-11 Score=129.70 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=125.5
Q ss_pred cccccChhHHHHhcCCccccC----------------------HHHHHHHHHHchhh---c---C-CCceEEEEeeCCee
Q 010846 21 KIHRLEESVVNRIAAGEVIQR----------------------PVSAVKELVENSLD---A---D-ATSINVVVKDGGLK 71 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~----------------------~~~~vkELieNSlD---A---~-At~I~I~i~~~g~~ 71 (499)
.|+.|..--.-|.+.|.+|.+ +..++.|+|+||+| | | |+.|.|.++ +|
T Consensus 3 ~i~~L~~lE~Vr~RPgmYIGs~~~~~~~~~~~~~~~~~~~~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~-dg-- 79 (602)
T PHA02569 3 EFKVLSDREHILKRPGMYIGSVAYEAHERFLFGKFTQVEYVPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK-NN-- 79 (602)
T ss_pred ceeEccchHHHhcCCCceeCCCCcccccceeecccccccccccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc-CC--
Confidence 466666666667777777765 45678999999999 4 5 899999999 66
Q ss_pred EEEEEECCCCCCcccHH-----------h-hhhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCcc
Q 010846 72 LIQVSDDGHGIRYEDLP-----------I-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (499)
Q Consensus 72 ~i~V~DNG~GI~~~dl~-----------~-~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~ 138 (499)
.|+|.|||.|||.+--+ . ++.-|+.+|+. |-+ ..+-|.+|.+++....+| .++|+++.. ..
T Consensus 80 sisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd---~~y-kvSGGlhGVG~svvNaLS~~~~V~v~~~--~~ 153 (602)
T PHA02569 80 QVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD---DTN-RVTGGMNGVGSSLTNFFSVLFIGETCDG--KN 153 (602)
T ss_pred EEEEEECCCcccCCcccccccccccceEEEEEeeccccccC---Ccc-eeeCCcCCccceeeeccchhhheEEEcC--CE
Confidence 49999999999975331 1 23457778873 333 357899999988888888 488876433 33
Q ss_pred EEEEEEEcCeeecc-cccccCCCceEEEEEeeechhhhhhhhccCCc---hhHHHHHHHHHHHHhhCCCeEEEEEEC
Q 010846 139 GYRVSYRDGVMESE-PKACAAVKGTQIMVENLFYNMIARRKTLQNSS---DDYTKIVDLLSRMAIHHTNVSFSCRKH 211 (499)
Q Consensus 139 ~~~~~~~~g~~~~~-~~~~~~~~GTtV~v~~LF~n~PvRrk~lk~~~---~e~~~I~~~v~~yAl~~p~v~f~l~~~ 211 (499)
.|...|.+|..... +......+||+|++. |....+ .... ..+..|.+.++.+|..+|++.+.+.+.
T Consensus 154 ~~~q~f~~G~~~~~~~~~~~~~~GT~V~F~------PD~~iF-~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 154 EVTVNCSNGAENISWSTKPGKGKGTSVTFI------PDFSHF-EVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred EEEEEecCCcccCCcccCCCCCCccEEEEE------ECHHHh-CCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 58999999865322 122234689999996 654443 2211 136778899999999999999999764
No 36
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=99.04 E-value=1.6e-09 Score=127.10 Aligned_cols=178 Identities=16% Similarity=0.162 Sum_probs=127.0
Q ss_pred cccccChhHHHHhcCCcccc----------------------------CHHHHHHHHHHchhhc-------C-CCceEEE
Q 010846 21 KIHRLEESVVNRIAAGEVIQ----------------------------RPVSAVKELVENSLDA-------D-ATSINVV 64 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~----------------------------~~~~~vkELieNSlDA-------~-At~I~I~ 64 (499)
.|++|.+----+.+.|.+|. .+..++.|+|.||+|- | ++.|.|.
T Consensus 9 ~yq~L~~lEhVr~RP~mYIGS~~~~~~~~wv~~~~~~~m~~~~v~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~ 88 (1388)
T PTZ00108 9 RYQKKTQIEHILLRPDTYIGSIETQTEDMWVYDEEKNRMVYKTITYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVT 88 (1388)
T ss_pred hhhcccchhHHhcCCCceeCCCCccccceeeecccccccccccccccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEE
Confidence 46677666666677776665 4578999999999992 3 7899999
Q ss_pred EeeC-CeeEEEEEECCCCCCcccH--------Hhh-hhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEE
Q 010846 65 VKDG-GLKLIQVSDDGHGIRYEDL--------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTIT 133 (499)
Q Consensus 65 i~~~-g~~~i~V~DNG~GI~~~dl--------~~~-~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~ 133 (499)
|+.+ | .|+|.|||.|||.+-- +.+ +.-|+.||+. |-....+-|.+|.+......+| .++|+++.
T Consensus 89 i~~d~g--~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd---d~~yKvSGGlhGVGasvvNalS~~f~Vev~r 163 (1388)
T PTZ00108 89 IDEENG--EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD---DTEKRVTGGRNGFGAKLTNIFSTKFTVECVD 163 (1388)
T ss_pred EeccCC--eEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC---CCceeeecccccCCccccccccceEEEEEEE
Confidence 9876 6 4999999999997642 223 3457778874 3334578899999977777778 59999998
Q ss_pred cCCccEEEEEEEcCee-ecccc--cccC-CCceEEEEEeeechhhhhhhhccCCchhHHH---HHHHHHHHHhhCCCeEE
Q 010846 134 KGHLHGYRVSYRDGVM-ESEPK--ACAA-VKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSF 206 (499)
Q Consensus 134 ~~~~~~~~~~~~~g~~-~~~~~--~~~~-~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~---I~~~v~~yAl~~p~v~f 206 (499)
.....-|...|.+|.. ...|. .+.. ..||+|++. |.-..+ ....-.... |.+.+..+|..+|++.+
T Consensus 164 ~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF~------PD~~iF-~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI 236 (1388)
T PTZ00108 164 SKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTFY------PDYAKF-GMTEFDDDMLRLLKKRVYDLAGCFGKLKV 236 (1388)
T ss_pred CCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEEE------eCHHHc-CCCccChHHHHHHHHHHHHHhcCCCCcEE
Confidence 7444568999998831 12222 2323 689999986 554443 222222233 77889999999999999
Q ss_pred EEEE
Q 010846 207 SCRK 210 (499)
Q Consensus 207 ~l~~ 210 (499)
.|..
T Consensus 237 ~lnd 240 (1388)
T PTZ00108 237 YLNG 240 (1388)
T ss_pred EEeC
Confidence 9864
No 37
>PLN03128 DNA topoisomerase 2; Provisional
Probab=98.98 E-value=3.9e-08 Score=114.49 Aligned_cols=257 Identities=14% Similarity=0.143 Sum_probs=153.4
Q ss_pred cccCHHHHHHHHHHchhhcC-----CCceEEEEee-CCeeEEEEEECCCCCCcccH--------Hhh-hhhcccCCcccc
Q 010846 38 VIQRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDL--------PIL-CERHTTSKLSKY 102 (499)
Q Consensus 38 vi~~~~~~vkELieNSlDA~-----At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl--------~~~-~~r~~TSK~~~~ 102 (499)
++..+..++.|+|.||+|-. ++.|.|.|+. +| .|+|.|||.|||.+-- +.+ +.-|+.||+.
T Consensus 49 ~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dg--sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFd-- 124 (1135)
T PLN03128 49 YVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQN--TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFD-- 124 (1135)
T ss_pred cchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCC--eEEEEecCccccCCCCCCCCCccceEEEEeeccccccC--
Confidence 33456789999999999932 5899999987 56 5999999999997632 222 3457888874
Q ss_pred cccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecc-c--cccc-CCCceEEEEEeeechhhhhh
Q 010846 103 EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESE-P--KACA-AVKGTQIMVENLFYNMIARR 177 (499)
Q Consensus 103 ~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~-~--~~~~-~~~GTtV~v~~LF~n~PvRr 177 (499)
|-....+-|.+|.+......+| .++|+++......-|+..|.+|..... + ..+. ..+||+|++. |.-.
T Consensus 125 -d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF~------PD~~ 197 (1135)
T PLN03128 125 -DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITFK------PDLA 197 (1135)
T ss_pred -CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEEE------ECHH
Confidence 3334568899999977777787 599999854444468999998864322 2 1222 3589999997 5543
Q ss_pred hh-ccCCc-hhHHHHHHHHHHHH-hhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHhChhhhccceEeeecccCCCC
Q 010846 178 KT-LQNSS-DDYTKIVDLLSRMA-IHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSS 254 (499)
Q Consensus 178 k~-lk~~~-~e~~~I~~~v~~yA-l~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~ 254 (499)
.+ ..... +.+..+.+.+..+| ..+|++.+.|..... ....+.+-+....+..-......+-+... .
T Consensus 198 iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnder~--------~~~G~~dyv~~~~~~~~~~~~~~i~~~~~-~-- 266 (1135)
T PLN03128 198 KFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGKKL--------PVKSFQDYVGLYLGPNSREDPLPRIYEKV-N-- 266 (1135)
T ss_pred HcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecCCC--------CCCCHHHHHHHHhcCCCCCCCCCeEEEec-C--
Confidence 33 11112 22345666677777 677999999975320 11344444443222110000011212211 1
Q ss_pred cceEEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcCCCC-------------CCcEEEEEEEc
Q 010846 255 SFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATFPKA-------------SKPFIYMSIVL 316 (499)
Q Consensus 255 ~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~~y~~~lpk~-------------~~P~~~L~i~i 316 (499)
..|.+---.+.. ...++-|+|+-+-.. ..+.++|.+....++-+. ..=++++++.+
T Consensus 267 -~~~eva~~~s~~-----~~~~~SFVN~I~T~~GGTHv~g~~~~i~~~i~~~~~kk~K~~~~l~~~diregL~~vIs~ki 340 (1135)
T PLN03128 267 -DRWEVCVSLSDG-----SFQQVSFVNSIATIKGGTHVDYVADQIVKHIQEKVKKKNKNATHVKPFQIKNHLWVFVNCLI 340 (1135)
T ss_pred -ceEEEEEEEcCC-----CceEEEEECcEecCCCCchHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHhCcEEEEEEec
Confidence 123333223321 245789999977442 356677766665543211 13467788887
Q ss_pred CCCcee
Q 010846 317 PPEHVD 322 (499)
Q Consensus 317 ~p~~vD 322 (499)
+--..|
T Consensus 341 ~nP~Fe 346 (1135)
T PLN03128 341 ENPTFD 346 (1135)
T ss_pred CCCccc
Confidence 743333
No 38
>PLN03237 DNA topoisomerase 2; Provisional
Probab=98.91 E-value=9e-09 Score=120.53 Aligned_cols=179 Identities=15% Similarity=0.156 Sum_probs=121.8
Q ss_pred cccccChhHHHHhcCCccccCH--------------------------HHHHHHHHHchhhc-----CCCceEEEEe-eC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRP--------------------------VSAVKELVENSLDA-----DATSINVVVK-DG 68 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~--------------------------~~~vkELieNSlDA-----~At~I~I~i~-~~ 68 (499)
.-++|.+----+.+.|.+|.+. ..++.|+|.||+|- .++.|.|.|+ .+
T Consensus 31 ~Yqkls~lEhVr~RP~mYIGSt~~~~~~~wv~~~~~m~~~~v~~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~ 110 (1465)
T PLN03237 31 MYQKKSQLEHILLRPDTYIGSIEKHTQTLWVYETDKMVQRSVTYVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQ 110 (1465)
T ss_pred hhhccccchHHhcCCCCEeCCCCcccceeeeeccccceeeeccccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCC
Confidence 3567777777778888888764 48999999999993 2689999998 45
Q ss_pred CeeEEEEEECCCCCCcccH--------Hhh-hhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCcc
Q 010846 69 GLKLIQVSDDGHGIRYEDL--------PIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (499)
Q Consensus 69 g~~~i~V~DNG~GI~~~dl--------~~~-~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~ 138 (499)
| .|+|.|||.|||.+-- +++ +.-|+.||+. |-....+-|.+|.+......+| .++|+++......
T Consensus 111 g--sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFd---d~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk 185 (1465)
T PLN03237 111 N--LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYD---DNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQK 185 (1465)
T ss_pred C--EEEEEecCccccCCCCCCCCCccceEEEEeeeccccCC---CCcceeeccccccCccccccccCeeEEEEEECCCCe
Confidence 5 4999999999997632 223 3457778875 3334578899999977767778 5888887432334
Q ss_pred EEEEEEEc--Ceeecccc-cc-cCCCceEEEEEeeechhhhhhhhccCCchhHHH---HHHHHHHHH-hhCCCeEEEEEE
Q 010846 139 GYRVSYRD--GVMESEPK-AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMA-IHHTNVSFSCRK 210 (499)
Q Consensus 139 ~~~~~~~~--g~~~~~~~-~~-~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~---I~~~v~~yA-l~~p~v~f~l~~ 210 (499)
-|+..|.+ |....... .+ ...+||+|++. |.-..+ ....-.+.. +.+.+...| ..++++.+.|..
T Consensus 186 ~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF~------PD~eiF-~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnd 258 (1465)
T PLN03237 186 KYKQVFSNNMGKKSEPVITKCKKSENWTKVTFK------PDLAKF-NMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNG 258 (1465)
T ss_pred EEEEEEeCCCCccCCceeccCCCCCCceEEEEE------ECHHHh-CCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 68889986 65432111 22 23699999986 554443 222222333 334555556 778999999975
Q ss_pred C
Q 010846 211 H 211 (499)
Q Consensus 211 ~ 211 (499)
.
T Consensus 259 e 259 (1465)
T PLN03237 259 K 259 (1465)
T ss_pred c
Confidence 3
No 39
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.74 E-value=4.3e-08 Score=84.19 Aligned_cols=79 Identities=27% Similarity=0.376 Sum_probs=62.5
Q ss_pred cCHHHHHHHHHHchhhcCCC--ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccch
Q 010846 40 QRPVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGE 116 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At--~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGe 116 (499)
..+..++.||++||+|+... .|.|.+.. ++.-.|.|.|||.||++++++.++.++.+++... ...+-+|.
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~~-------~~~~g~Gl 76 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKSE-------TSISGHGL 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSSS-------GGSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccccccc-------cccCCCCh
Confidence 35678999999999999766 89999875 4566899999999999999999999998887521 22334678
Q ss_pred HHHhhhhhc
Q 010846 117 ALASMTYVG 125 (499)
Q Consensus 117 aLaSis~vs 125 (499)
+|+....++
T Consensus 77 GL~~~~~~~ 85 (111)
T PF02518_consen 77 GLYIVKQIA 85 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887666554
No 40
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=98.23 E-value=2.3e-06 Score=91.47 Aligned_cols=78 Identities=27% Similarity=0.331 Sum_probs=65.4
Q ss_pred CCccccCHHHHHHHHHHchhhcCC-----CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccc
Q 010846 35 AGEVIQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSI 108 (499)
Q Consensus 35 ag~vi~~~~~~vkELieNSlDA~A-----t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~ 108 (499)
.+...+....+|..||+||+||-+ ..|.+.+.+ ++.--|.|.|||+||+++..+.+++++.++|-.
T Consensus 421 ~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~-------- 492 (537)
T COG3290 421 SELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT-------- 492 (537)
T ss_pred CccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC--------
Confidence 444557788999999999999977 689999965 556679999999999999999999999999862
Q ss_pred cccCccchHHHhhhh
Q 010846 109 KSMGFRGEALASMTY 123 (499)
Q Consensus 109 ~t~GfrGeaLaSis~ 123 (499)
|-||.+|+-+..
T Consensus 493 ---~~rGiGL~Lvkq 504 (537)
T COG3290 493 ---GGRGIGLYLVKQ 504 (537)
T ss_pred ---CCCchhHHHHHH
Confidence 567888887754
No 41
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=98.21 E-value=1.9e-06 Score=92.69 Aligned_cols=60 Identities=35% Similarity=0.499 Sum_probs=52.5
Q ss_pred cCHHHHHHHHHHchhhcCC----CceEEEEe-eCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 40 QRPVSAVKELVENSLDADA----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~A----t~I~I~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.++.+++-.||.||+||-+ ..|+|... .++.-.|+|.|||+||+++-++.+|++|.|||-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~ 560 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP 560 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCc
Confidence 4789999999999999965 46888875 355567999999999999999999999999995
No 42
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.2e-06 Score=87.58 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=123.3
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcC--------------CCceEEEEee-CCeeEEEEEECCCCCCcc
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD--------------ATSINVVVKD-GGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~--------------At~I~I~i~~-~g~~~i~V~DNG~GI~~~ 85 (499)
.|++|.+-+++.+-|+ -.--++|||-||=||- .....|.+.. .....+++.|.|.||+++
T Consensus 42 E~~qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~ 116 (656)
T KOG0019|consen 42 ETNQLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKE 116 (656)
T ss_pred hHHhHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHH
Confidence 5899999999988887 3456999999999983 1233444432 223469999999999999
Q ss_pred cHHhhhhhcccCCccccc-cc----ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee-ecccccccC
Q 010846 86 DLPILCERHTTSKLSKYE-DL----QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPKACAA 158 (499)
Q Consensus 86 dl~~~~~r~~TSK~~~~~-dl----~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~-~~~~~~~~~ 158 (499)
||..-...-+-|=-..|- .+ ..+.-.|..|.+.+|--.|+ +|+|+||..++. +|.+....|.. .....++ .
T Consensus 117 dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~~~~-~ 194 (656)
T KOG0019|consen 117 DLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAEASG-L 194 (656)
T ss_pred HHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEeeccC-c
Confidence 986432222222111121 12 23567899999999999998 699999998765 77777765433 2222222 6
Q ss_pred CCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhh--CCCeEEEEEECCceeeeeecCCCCCHHHHHHHHh
Q 010846 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIH--HTNVSFSCRKHGAARADVHSIATSSRLDSIRTVY 234 (499)
Q Consensus 159 ~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~--~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~if 234 (499)
.+||.|+.. ++.-...-.+-.+|.+++.+|+.. +| |-+...+.++.++.|...+..-..+.....|
T Consensus 195 ~rGTki~l~---------lKe~~~ey~ee~rikeiVKK~S~Fv~yP-I~l~~ek~N~tKpiW~rnp~dit~eey~eFY 262 (656)
T KOG0019|consen 195 RTGTKIVIH---------LKEGDCEFLEEKRIKEVVKKYSNFVSYP-IYLNGERVNNLKAIWTMNPKEVNEEEHEEFY 262 (656)
T ss_pred cccceEEee---------ehhhhhhhccHhHHHHHHhhcccccccc-chhhhhhhhccCcccccCchhhhHHHHHHHH
Confidence 789999985 111111112458899999999853 33 2333333455566665544443333333333
No 43
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=98.09 E-value=1.3e-05 Score=85.05 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=56.9
Q ss_pred HHHHHHHHHHchhhcCCC------ceEEEEe-eCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCcc
Q 010846 42 PVSAVKELVENSLDADAT------SINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At------~I~I~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~Gfr 114 (499)
...++.+|+.||+++.+. .|.|.+. .++.-.|+|.|||.||++++...+|++|.|+|... ++-.
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~---------~~G~ 458 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS---------RKHI 458 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC---------CCCC
Confidence 678999999999998543 3666654 35555799999999999999999999999998642 2335
Q ss_pred chHHHhhhhh
Q 010846 115 GEALASMTYV 124 (499)
Q Consensus 115 GeaLaSis~v 124 (499)
|.+|+-...+
T Consensus 459 GlGL~i~~~i 468 (494)
T TIGR02938 459 GMGLSVAQEI 468 (494)
T ss_pred cccHHHHHHH
Confidence 7777665443
No 44
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=98.04 E-value=1.9e-05 Score=86.23 Aligned_cols=75 Identities=20% Similarity=0.310 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHchhhc------CCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCc
Q 010846 41 RPVSAVKELVENSLDA------DATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (499)
Q Consensus 41 ~~~~~vkELieNSlDA------~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~Gf 113 (499)
....++.+|++||++| +...|.|.+.. ++.-.|.|.|||.||++++.+.+|++|+++|-.. .|-
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~~---------~~g 502 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADE---------PGE 502 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCCC---------CCC
Confidence 3567899999999998 34678888764 4445699999999999999999999999987432 345
Q ss_pred cchHHHhhhhh
Q 010846 114 RGEALASMTYV 124 (499)
Q Consensus 114 rGeaLaSis~v 124 (499)
+|.+|+-+.++
T Consensus 503 ~GlGL~ivk~i 513 (545)
T PRK15053 503 HGIGLYLIASY 513 (545)
T ss_pred ceeCHHHHHHH
Confidence 68888776654
No 45
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.9e-05 Score=81.34 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=92.2
Q ss_pred HHHHHHHHchhhcCC----------------CceEEEE--eeCCeeEEEEEECCCCCCcccHHh-hh--hhcccC----C
Q 010846 44 SAVKELVENSLDADA----------------TSINVVV--KDGGLKLIQVSDDGHGIRYEDLPI-LC--ERHTTS----K 98 (499)
Q Consensus 44 ~~vkELieNSlDA~A----------------t~I~I~i--~~~g~~~i~V~DNG~GI~~~dl~~-~~--~r~~TS----K 98 (499)
-.++|||.||-||=- ....|.| +.. .+.+.|.|.|.||+.+||-. ++ .+-.|| |
T Consensus 98 IFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke-~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~K 176 (785)
T KOG0020|consen 98 IFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKE-KKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEK 176 (785)
T ss_pred HHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechh-hCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHH
Confidence 469999999999831 2344444 433 34689999999999999743 32 223333 5
Q ss_pred cccccccc--cccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee--ecccccccCCCceEEEEEeeechh
Q 010846 99 LSKYEDLQ--SIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM--ESEPKACAAVKGTQIMVENLFYNM 173 (499)
Q Consensus 99 ~~~~~dl~--~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~--~~~~~~~~~~~GTtV~v~~LF~n~ 173 (499)
+.+..+.. ...-.|..|.+.+|---|+ +|.|+|++.++. -|-+.-+.... ...|....-.+||+|+..
T Consensus 177 m~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~-QyiWESdan~FsvseDprg~tL~RGt~ItL~------ 249 (785)
T KOG0020|consen 177 MQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDS-QYIWESDANSFSVSEDPRGNTLGRGTEITLY------ 249 (785)
T ss_pred hhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCcc-ceeeeccCcceeeecCCCCCcccCccEEEEE------
Confidence 54433332 2256788899999988888 599999998753 23333333333 223444556799999985
Q ss_pred hhhhhhccCCc---hhHHHHHHHHHHHHh
Q 010846 174 IARRKTLQNSS---DDYTKIVDLLSRMAI 199 (499)
Q Consensus 174 PvRrk~lk~~~---~e~~~I~~~v~~yAl 199 (499)
|+..+ -|...++++|.+|+-
T Consensus 250 ------LkeEA~dyLE~dtlkeLvkkYSq 272 (785)
T KOG0020|consen 250 ------LKEEAGDYLEEDTLKELVKKYSQ 272 (785)
T ss_pred ------ehhhhhhhcchhHHHHHHHHHHH
Confidence 22222 255789999999984
No 46
>PRK10364 sensor protein ZraS; Provisional
Probab=97.88 E-value=6.7e-05 Score=80.35 Aligned_cols=72 Identities=28% Similarity=0.350 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHchhhcC--CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH
Q 010846 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~--At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
....++..||+||++|. ...|.|.+.. ++.-.|.|.|||.||++++++.++++|+++|-. | +|.+
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~-----------g-~GlG 415 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE-----------G-TGLG 415 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC-----------C-Cccc
Confidence 46688999999999984 4568887754 333469999999999999999999999987631 2 4777
Q ss_pred HHhhhhh
Q 010846 118 LASMTYV 124 (499)
Q Consensus 118 LaSis~v 124 (499)
|+-+..+
T Consensus 416 L~iv~~~ 422 (457)
T PRK10364 416 LAVVHNI 422 (457)
T ss_pred HHHHHHH
Confidence 7766554
No 47
>PRK10604 sensor protein RstB; Provisional
Probab=97.86 E-value=8.6e-05 Score=79.21 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=57.6
Q ss_pred HHHHHHHHHHchhhcCCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHHHh
Q 010846 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaS 120 (499)
+..++.+||+||+.++...|.|.+.. ++.-.|.|.|||.||++++++.++++|++..... ...+-| .|.+|+-
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~~~~-----~~~~~g-~GLGL~i 393 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLDPSR-----DRATGG-CGLGLAI 393 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCCCCC-----CCCCCC-ccchHHH
Confidence 56789999999999998889888864 3344699999999999999999999998753221 112223 3777765
Q ss_pred hhhh
Q 010846 121 MTYV 124 (499)
Q Consensus 121 is~v 124 (499)
...+
T Consensus 394 vk~i 397 (433)
T PRK10604 394 VHSI 397 (433)
T ss_pred HHHH
Confidence 5444
No 48
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.86 E-value=8.4e-05 Score=78.66 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=57.8
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEeeC-CeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~~-g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
+..++.+||.||++++. ..|.|.+... +.-.|+|.|||.||+++++..++++|++++..... . .+-+|.+|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~-----~-~~g~GlGL 427 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN-----S-GEGTGLGL 427 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC-----C-CCCccccH
Confidence 56789999999999873 4688887653 34469999999999999999999999988754211 1 23357777
Q ss_pred Hhhhhh
Q 010846 119 ASMTYV 124 (499)
Q Consensus 119 aSis~v 124 (499)
+-+..+
T Consensus 428 ~i~~~~ 433 (457)
T TIGR01386 428 AIVRSI 433 (457)
T ss_pred HHHHHH
Confidence 766543
No 49
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.84 E-value=9.9e-05 Score=60.10 Aligned_cols=75 Identities=25% Similarity=0.337 Sum_probs=52.1
Q ss_pred HHHHHHHHHchhhcCC---CceEEEEeeC-CeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 43 VSAVKELVENSLDADA---TSINVVVKDG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 43 ~~~vkELieNSlDA~A---t~I~I~i~~~-g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
..++.|||+||+++++ ..|.|.+... +.-.|.|.|+|.||++.+++.++.++... .. ....+..|.+|
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~--~~------~~~~~~~g~gl 73 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG--SR------SRKGGGTGLGL 73 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC--CC------CCCCCccccCH
Confidence 5789999999999987 5677777643 34469999999999999998887765111 10 11234456667
Q ss_pred Hhhhhhc
Q 010846 119 ASMTYVG 125 (499)
Q Consensus 119 aSis~vs 125 (499)
+.+..++
T Consensus 74 ~~~~~~~ 80 (103)
T cd00075 74 SIVKKLV 80 (103)
T ss_pred HHHHHHH
Confidence 6665543
No 50
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.80 E-value=0.00011 Score=79.66 Aligned_cols=72 Identities=28% Similarity=0.383 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHchhhcC----CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccc
Q 010846 41 RPVSAVKELVENSLDAD----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRG 115 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~----At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrG 115 (499)
.+..++.+|++||++|. ...|.|.+.. ++.-.|.|.|||.||++++++.+|+++.++|-. -.|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~~------------g~G 500 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKGS------------NRG 500 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCCC------------CCc
Confidence 46789999999999984 2468887754 444469999999999999999999999887732 246
Q ss_pred hHHHhhhhh
Q 010846 116 EALASMTYV 124 (499)
Q Consensus 116 eaLaSis~v 124 (499)
.+|+-+..+
T Consensus 501 lGL~iv~~i 509 (542)
T PRK11086 501 VGLYLVKQS 509 (542)
T ss_pred CcHHHHHHH
Confidence 777665544
No 51
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.78 E-value=8.9e-05 Score=78.76 Aligned_cols=57 Identities=26% Similarity=0.282 Sum_probs=48.5
Q ss_pred HHHHHHHHHHchhhcCCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
+..++.+||+||+.++...|.|.+.. ++.-.|+|.|||.||++++++.++++|++.+
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~ 411 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVD 411 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCC
Confidence 46689999999999998888888763 4444699999999999999999999988654
No 52
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.73 E-value=0.00011 Score=77.05 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=47.7
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEe--eCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
+..++..||.||+.+.. ..|.|.+. .++.-.|.|.|||.||++++++.++++|.+.+-
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~ 334 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR 334 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC
Confidence 57899999999999875 45766653 344446999999999999999999999987764
No 53
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.71 E-value=0.0002 Score=73.80 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=53.8
Q ss_pred HHHHHHHHHHchhhcC--CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 42 PVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 42 ~~~~vkELieNSlDA~--At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
+..++.+||+||+.++ .+.|.|.+.. ++.-.|.|+|||.||++++++.++.+|.+.+. ..|-.|.+|
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----------~~~g~GlGL 317 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMDS----------RYGGIGLGL 317 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCCC----------CCCCcCHHH
Confidence 3578999999999986 3568888753 44446999999999999999999999875321 112347777
Q ss_pred Hhhhhh
Q 010846 119 ASMTYV 124 (499)
Q Consensus 119 aSis~v 124 (499)
+-...+
T Consensus 318 ~i~~~i 323 (356)
T PRK10755 318 SIVSRI 323 (356)
T ss_pred HHHHHH
Confidence 665443
No 54
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.70 E-value=0.00014 Score=77.40 Aligned_cols=78 Identities=28% Similarity=0.312 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH
Q 010846 41 RPVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
.+..++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.++++|++.+-..- ...|-.|.+
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~------~~~~G~GLG 390 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARS------RQTGGSGLG 390 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCC------CCCCCCchH
Confidence 367899999999999965 357776653 33446999999999999999999999987653210 112345777
Q ss_pred HHhhhhh
Q 010846 118 LASMTYV 124 (499)
Q Consensus 118 LaSis~v 124 (499)
|+-...+
T Consensus 391 L~ivk~i 397 (430)
T PRK11006 391 LAIVKHA 397 (430)
T ss_pred HHHHHHH
Confidence 7665443
No 55
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.67 E-value=0.00026 Score=75.52 Aligned_cols=77 Identities=23% Similarity=0.290 Sum_probs=56.6
Q ss_pred HHHHHHHHHHchhhcCCC--ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 42 PVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At--~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
+..++.+||+||+.++.. .|.|.+.. ++.-.|.|.|||.||++++++.++++|++++...- ...|-.|.+|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~------~~~~g~GlGL 426 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN------RASGGSGLGL 426 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC------CCCCCCcHHH
Confidence 567899999999998653 57777754 33346999999999999999999999987754311 1234458888
Q ss_pred Hhhhhh
Q 010846 119 ASMTYV 124 (499)
Q Consensus 119 aSis~v 124 (499)
+-+..+
T Consensus 427 ~iv~~i 432 (466)
T PRK10549 427 AICLNI 432 (466)
T ss_pred HHHHHH
Confidence 765544
No 56
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=97.66 E-value=0.0004 Score=80.32 Aligned_cols=90 Identities=26% Similarity=0.337 Sum_probs=64.0
Q ss_pred HHHHHHHHHHchhhcC--CCceEEEEee----------------CCeeEEEEEECCCCCCcccHHhhhhhcccCCccccc
Q 010846 42 PVSAVKELVENSLDAD--ATSINVVVKD----------------GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYE 103 (499)
Q Consensus 42 ~~~~vkELieNSlDA~--At~I~I~i~~----------------~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~ 103 (499)
+..++.+|+.||+++. ...|.|.+.. ++.-.|.|.|||.||++++++.++++|.++|-
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~---- 636 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA---- 636 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC----
Confidence 6789999999999974 3567777653 34446999999999999999999999998763
Q ss_pred ccccccccCccchHHHhhhhh-----ceEEEEEEEcCCccEEEEEE
Q 010846 104 DLQSIKSMGFRGEALASMTYV-----GHVTVTTITKGHLHGYRVSY 144 (499)
Q Consensus 104 dl~~~~t~GfrGeaLaSis~v-----s~l~I~Sr~~~~~~~~~~~~ 144 (499)
|-.|.+|+-...+ +++.+.|.... ...+.+.+
T Consensus 637 --------~G~GLGL~i~~~iv~~~gG~i~v~s~~g~-Gt~f~i~L 673 (828)
T PRK13837 637 --------GGTGLGLATVHGIVSAHAGYIDVQSTVGR-GTRFDVYL 673 (828)
T ss_pred --------CCCcchHHHHHHHHHHCCCEEEEEecCCC-eEEEEEEE
Confidence 2235666543322 57888876432 23344444
No 57
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.62 E-value=0.0004 Score=73.80 Aligned_cols=76 Identities=25% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
+..++.+||+||+.++. ..|.|++.. ++.-.|.|+|||.||+++++..++.++.+.+... ...+-.|.+|
T Consensus 369 l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~-------~~~~~~GlGL 441 (475)
T PRK11100 369 LRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPA-------NGRKSTGLGL 441 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCC-------CCCCCcchhH
Confidence 67889999999999864 578888863 4444699999999999999999999998775421 1223457777
Q ss_pred Hhhhhh
Q 010846 119 ASMTYV 124 (499)
Q Consensus 119 aSis~v 124 (499)
+.+..+
T Consensus 442 ~i~~~~ 447 (475)
T PRK11100 442 AFVREV 447 (475)
T ss_pred HHHHHH
Confidence 766543
No 58
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.60 E-value=0.00034 Score=76.05 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.8
Q ss_pred HHHHHHHHHHchhhcCCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHHHh
Q 010846 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALAS 120 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaS 120 (499)
...++..||+||++++...|.|.+.. ++.-.|.|.|||.||++++++.++++|.+.+-.. -| .|.+|+-
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~~~~~---------~G-~GLGL~I 448 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRADTLR---------PG-QGLGLSV 448 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCCCC---------CC-cchhHHH
Confidence 46799999999999998888888754 4444699999999999999999999987543211 13 3777766
Q ss_pred hhhh
Q 010846 121 MTYV 124 (499)
Q Consensus 121 is~v 124 (499)
...+
T Consensus 449 vk~i 452 (485)
T PRK10815 449 AREI 452 (485)
T ss_pred HHHH
Confidence 5444
No 59
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.59 E-value=0.00011 Score=72.82 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHchhhcC-CCceEEEEeeCC-eeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 41 RPVSAVKELVENSLDAD-ATSINVVVKDGG-LKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~-At~I~I~i~~~g-~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
.+..++..||.||++|. ...|.|.+...+ .-.++|.|||.||++++++.++++|.|+|..
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 36789999999999999 599999997643 4569999999999999999999999999864
No 60
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.54 E-value=0.00033 Score=57.87 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHchhhcCCC--ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 41 RPVSAVKELVENSLDADAT--SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At--~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
.+..++.||++|++++..+ .|.|.+.. ++...|.|.|||.||++++++.++.++..++
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~ 65 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTD 65 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECC
Confidence 4678899999999999886 78888764 3455799999999999999998888776554
No 61
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.51 E-value=0.00042 Score=73.31 Aligned_cols=56 Identities=32% Similarity=0.303 Sum_probs=48.1
Q ss_pred HHHHHHHHHHchhhcCCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccC
Q 010846 42 PVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (499)
+..++.+||+||+.++...|.|.+.. ++.-.|+|.|||.||++++++.++++|+..
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~ 388 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRG 388 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccC
Confidence 45689999999999999999998864 444469999999999999999999998753
No 62
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.50 E-value=0.0003 Score=79.51 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=55.7
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCccc-HHhhhhhcccCCcccccccccccccCccchH
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYED-LPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~d-l~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
...++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++ .+.++++|.++|- +-.|.+
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------------~G~GLG 647 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------------AGMGIG 647 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------------CCcchh
Confidence 56789999999999964 468888864 4455799999999999998 8899999988763 224777
Q ss_pred HHhhhhh
Q 010846 118 LASMTYV 124 (499)
Q Consensus 118 LaSis~v 124 (499)
|+.+..+
T Consensus 648 L~i~~~i 654 (679)
T TIGR02916 648 VYECRQY 654 (679)
T ss_pred HHHHHHH
Confidence 7766543
No 63
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=97.50 E-value=0.00036 Score=71.46 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHchhhcC---CCceEEEEeeC-------C----eeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 41 RPVSAVKELVENSLDAD---ATSINVVVKDG-------G----LKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~---At~I~I~i~~~-------g----~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
.+..++.+||.||++|. ...|.|.+... + ...|.|.|||.||++++.+.++.+|+|+|
T Consensus 237 ~l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~ 308 (348)
T PRK11073 237 QIEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC
Confidence 36889999999999975 34566654321 1 23589999999999999999999998876
No 64
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.44 E-value=0.00068 Score=77.66 Aligned_cols=88 Identities=25% Similarity=0.248 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHchhhcCC-CceEEEEee--CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH
Q 010846 41 RPVSAVKELVENSLDADA-TSINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A-t~I~I~i~~--~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
.+.+++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.+|++|++.|-..- ....|-.|.+
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~-----~~~~~GtGLG 472 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHG-----GKPATGTGIG 472 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCC-----CCCCCCcchH
Confidence 467899999999999863 457777653 34446999999999999999999999998863211 1123445677
Q ss_pred HHhhhhh-----ceEEEEEEE
Q 010846 118 LASMTYV-----GHVTVTTIT 133 (499)
Q Consensus 118 LaSis~v-----s~l~I~Sr~ 133 (499)
|+-...+ +++++.|..
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecC
Confidence 7554333 467776654
No 65
>PRK10337 sensor protein QseC; Provisional
Probab=97.41 E-value=0.00056 Score=72.73 Aligned_cols=54 Identities=22% Similarity=0.346 Sum_probs=44.2
Q ss_pred HHHHHHHHHHchhhcCCC--ceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 42 PVSAVKELVENSLDADAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At--~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
+..++.+||+||++++.. .|.|.+... .|.|.|||.||++++++.++++|++.+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~~---~i~i~D~G~Gi~~~~~~~if~~f~~~~ 408 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNAR---NFTVRDNGPGVTPEALARIGERFYRPP 408 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEee---EEEEEECCCCCCHHHHHHhcccccCCC
Confidence 456899999999998765 456655433 599999999999999999999998754
No 66
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.40 E-value=0.00062 Score=79.14 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHchhhcC-CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~-At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
.+..++..||.||+++. ...|.|.+.. ++.-.|+|.|||.||++++++.++++|++.+-. .|-.|.+|
T Consensus 513 ~l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL 582 (921)
T PRK15347 513 RLRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADTH----------SQGTGLGL 582 (921)
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCCC----------CCCCchHH
Confidence 36789999999999985 3468888754 344469999999999999999999999887532 13347777
Q ss_pred Hhhhh
Q 010846 119 ASMTY 123 (499)
Q Consensus 119 aSis~ 123 (499)
+-...
T Consensus 583 ~i~~~ 587 (921)
T PRK15347 583 TIASS 587 (921)
T ss_pred HHHHH
Confidence 54433
No 67
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=97.38 E-value=0.00025 Score=77.20 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHchhhcCCC--ceEEEEee--CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 41 RPVSAVKELVENSLDADAT--SINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At--~I~I~i~~--~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
.+..++.+|+.||+.+... .|.|.+.. ++.-.|.|+|||+||+++++..+++++.++|
T Consensus 500 ~l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~ 561 (607)
T PRK11360 500 LLKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTK 561 (607)
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCC
Confidence 3678899999999998554 56666642 3314699999999999999999999998876
No 68
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=97.37 E-value=0.0013 Score=58.48 Aligned_cols=58 Identities=28% Similarity=0.250 Sum_probs=43.1
Q ss_pred ccCHHHHHHHHHHchhhcC-----CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 39 IQRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 39 i~~~~~~vkELieNSlDA~-----At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
+..+..++.||+.||+.++ ...|.|.+.. ++.-.|.|.|||.||+ +++.++.++.+++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~ 100 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccC
Confidence 3456788999999999864 3468887754 3344699999999997 4666777777654
No 69
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=97.35 E-value=0.001 Score=75.65 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=56.3
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
+..++..||+||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.++++|.+.|-.... .-+-.|.+|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~------~~~g~GLGL 671 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQ------DQPHLGLGL 671 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCC------CCCCccHHH
Confidence 56889999999999853 457777754 444569999999999999999999999987643211 112347777
Q ss_pred Hhhhhh
Q 010846 119 ASMTYV 124 (499)
Q Consensus 119 aSis~v 124 (499)
+-...+
T Consensus 672 ~Ivr~I 677 (703)
T TIGR03785 672 YIVRLI 677 (703)
T ss_pred HHHHHH
Confidence 665444
No 70
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.34 E-value=0.0012 Score=66.34 Aligned_cols=57 Identities=35% Similarity=0.419 Sum_probs=45.8
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
+..++.+||.||++++. ..|.|.+.. ++.-.|.|.|||.||+++.++.++.+|.+.+
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~ 289 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVD 289 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecC
Confidence 56789999999999864 457776653 3334699999999999999999999987644
No 71
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.29 E-value=0.0019 Score=75.13 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHchhhcCC-CceEEEEee----CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccc
Q 010846 41 RPVSAVKELVENSLDADA-TSINVVVKD----GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRG 115 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A-t~I~I~i~~----~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrG 115 (499)
...+++..||.||+++.. ..|.|.+.. ++.-.|+|.|||.||++++++.++++|.+.|...- ..+--|
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~~~~-------~~~GtG 637 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQGDR-------YGKASG 637 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCCCCC-------CCCCcC
Confidence 467899999999999854 357777652 23456999999999999999999999988764310 112235
Q ss_pred hHHHhhhhh-----ceEEEEEEEcCCccEEEEEE
Q 010846 116 EALASMTYV-----GHVTVTTITKGHLHGYRVSY 144 (499)
Q Consensus 116 eaLaSis~v-----s~l~I~Sr~~~~~~~~~~~~ 144 (499)
.+|+-...+ +++++.|+...+ ..+.+.+
T Consensus 638 LGLaI~k~Lve~~GG~I~v~S~~g~G-T~F~I~L 670 (894)
T PRK10618 638 LTFFLCNQLCRKLGGHLTIKSREGLG-TRYSIHL 670 (894)
T ss_pred hhHHHHHHHHHHcCCEEEEEECCCCc-EEEEEEE
Confidence 555432222 468888775433 2344443
No 72
>PRK10490 sensor protein KdpD; Provisional
Probab=97.23 E-value=0.0017 Score=75.82 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=48.0
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
+..++.+||+||+.+.. +.|.|.+.. ++.-.|.|.|||.||++++++.++++|++.+-
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 839 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK 839 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC
Confidence 57899999999999864 357777753 44457999999999999999999999998653
No 73
>PRK13557 histidine kinase; Provisional
Probab=97.15 E-value=0.0017 Score=70.28 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=45.4
Q ss_pred HHHHHHHHHHchhhcCCC--ceEEEEe----------------eCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 42 PVSAVKELVENSLDADAT--SINVVVK----------------DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At--~I~I~i~----------------~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
+..++.+|+.||++|... .|.|... .++.-.|.|.|||.||++++++.++.+|+++|-
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~ 353 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE 353 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC
Confidence 567899999999998543 4555443 223446999999999999999999999988763
No 74
>PRK09835 sensor kinase CusS; Provisional
Probab=97.14 E-value=0.0031 Score=67.43 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 41 RPVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
.+..++.+||+||+.+.. ..|.|.+.. ++.-.|.|.|||.||++++++.++++|+++.
T Consensus 375 ~l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~ 435 (482)
T PRK09835 375 MLRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVD 435 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCC
Confidence 367889999999999863 357777753 3334699999999999999999999998764
No 75
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=97.06 E-value=0.002 Score=75.44 Aligned_cols=75 Identities=27% Similarity=0.287 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHchhhcCC-CceEEEEe--eCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH
Q 010846 41 RPVSAVKELVENSLDADA-TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A-t~I~I~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
.+..++..||.||+.+.. ..|.|.+. .++.-.|.|.|||.||++++++.++++|++.+-. ...|-.|.+
T Consensus 579 ~l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~--------~~~~g~GLG 650 (968)
T TIGR02956 579 RIRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQADGR--------RRSGGTGLG 650 (968)
T ss_pred HHHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccCCC--------CCCCCccHH
Confidence 356899999999999863 45777664 3441359999999999999999999999987621 123445777
Q ss_pred HHhhhh
Q 010846 118 LASMTY 123 (499)
Q Consensus 118 LaSis~ 123 (499)
|+-...
T Consensus 651 L~i~~~ 656 (968)
T TIGR02956 651 LAISQR 656 (968)
T ss_pred HHHHHH
Confidence 764433
No 76
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.99 E-value=0.0028 Score=73.86 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=59.3
Q ss_pred HHHHHHHHHHchhhcC-CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHHH
Q 010846 42 PVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (499)
Q Consensus 42 ~~~~vkELieNSlDA~-At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLa 119 (499)
+..++.+||.||+++. ...|.|.+.. ++.-.|.|.|||+||++++++.++++|++.+-. .|-.|.+|+
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~----------~~g~GLGL~ 631 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGK----------RGGTGLGLT 631 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCCCC----------CCCCcccHH
Confidence 5678999999999985 3568887754 333469999999999999999999999864321 133466665
Q ss_pred hhhhh-----ceEEEEEEEc
Q 010846 120 SMTYV-----GHVTVTTITK 134 (499)
Q Consensus 120 Sis~v-----s~l~I~Sr~~ 134 (499)
-...+ ++++|.|...
T Consensus 632 i~~~l~~~~gG~i~v~s~~~ 651 (914)
T PRK11466 632 ISSRLAQAMGGELSATSTPE 651 (914)
T ss_pred HHHHHHHHcCCEEEEEecCC
Confidence 43333 3577776543
No 77
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=96.97 E-value=0.0025 Score=58.92 Aligned_cols=83 Identities=25% Similarity=0.181 Sum_probs=53.1
Q ss_pred cCHHHHHHHHHHchhhcCC-----CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCc
Q 010846 40 QRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~A-----t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~Gf 113 (499)
....-|+.|++.||+..|- ..|.|.+.. ++.-.|.|.|+|.||+++.++..+.++.+.+.. ++ ...
T Consensus 41 ~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~--~~------~~~ 112 (161)
T PRK04069 41 EDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI--ED------LRE 112 (161)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCcc--cc------cCC
Confidence 4567799999999999873 357776643 444469999999999987776655555544321 11 112
Q ss_pred cchHHHhhhhhc-eEEEE
Q 010846 114 RGEALASMTYVG-HVTVT 130 (499)
Q Consensus 114 rGeaLaSis~vs-~l~I~ 130 (499)
.|.+|+-+..++ ++++.
T Consensus 113 ~G~GL~li~~l~d~v~~~ 130 (161)
T PRK04069 113 GGLGLFLIETLMDDVTVY 130 (161)
T ss_pred CceeHHHHHHHHHhEEEE
Confidence 244565555554 46555
No 78
>PRK10547 chemotaxis protein CheA; Provisional
Probab=96.93 E-value=0.0048 Score=69.44 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=67.2
Q ss_pred HHHHHHHHchhhcCC--------------CceEEEEee-CCeeEEEEEECCCCCCcccHH--------------------
Q 010846 44 SAVKELVENSLDADA--------------TSINVVVKD-GGLKLIQVSDDGHGIRYEDLP-------------------- 88 (499)
Q Consensus 44 ~~vkELieNSlDA~A--------------t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~-------------------- 88 (499)
..+..||.||+|+|- ..|.|.... ++.-.|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~ 467 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVG 467 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHH
Confidence 346789999999972 358888764 444579999999999997664
Q ss_pred -hhhhhcccCCcccccccccccccCccchHHHhhhh----h-ceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCce
Q 010846 89 -ILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTY----V-GHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGT 162 (499)
Q Consensus 89 -~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~----v-s~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GT 162 (499)
.+|.++.+++-. .....-||.+|+-... + ++++|.|+... ...+++.+ |..-+.-.|=
T Consensus 468 ~lIF~pgfst~~~-------~~~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~-Gt~f~i~L--------Pltlai~~~l 531 (670)
T PRK10547 468 MLIFAPGFSTAEQ-------VTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGK-GTTIRILL--------PLTLAILDGM 531 (670)
T ss_pred HHhhcCCcccccc-------cccCCCCchhHHHHHHHHHHcCCEEEEEecCCC-cEEEEEEE--------echhhhhhee
Confidence 355664443321 1122457888754422 2 36777765422 12222221 2222334555
Q ss_pred EEEEEeeechhhh
Q 010846 163 QIMVENLFYNMIA 175 (499)
Q Consensus 163 tV~v~~LF~n~Pv 175 (499)
.|.+-+--|-+|.
T Consensus 532 ~v~~~~~~~aiP~ 544 (670)
T PRK10547 532 SVRVADEVFILPL 544 (670)
T ss_pred EEEECCEEEEEEc
Confidence 6666666666664
No 79
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.92 E-value=0.0072 Score=70.90 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=59.4
Q ss_pred HHHHHHHHHHchhhcCC-CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHHH
Q 010846 42 PVSAVKELVENSLDADA-TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A-t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLa 119 (499)
+.+++..||.||+.+.. ..|.|.+.. ++.-.|.|.|||.||++++++.++++|.+.+-... ...+-.|.+|+
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~------~~~~GtGLGL~ 636 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQ------RNFQGTGLGLA 636 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCC------CCCCCeehhHH
Confidence 56899999999999853 357666643 44456999999999999999999999987542210 11233466665
Q ss_pred hhhhh-----ceEEEEEEE
Q 010846 120 SMTYV-----GHVTVTTIT 133 (499)
Q Consensus 120 Sis~v-----s~l~I~Sr~ 133 (499)
-...+ ++++|.|..
T Consensus 637 I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 637 ICEKLINMMDGDISVDSEP 655 (924)
T ss_pred HHHHHHHHCCCEEEEEEcC
Confidence 43333 367777754
No 80
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.89 E-value=0.0036 Score=72.74 Aligned_cols=87 Identities=18% Similarity=0.257 Sum_probs=58.2
Q ss_pred HHHHHHHHHHchhhcCC-CceEEEEe--e--CC--eeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCcc
Q 010846 42 PVSAVKELVENSLDADA-TSINVVVK--D--GG--LKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A-t~I~I~i~--~--~g--~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~Gfr 114 (499)
+..++.+||.||+.+.. ..|.|.+. . ++ .-.|.|.|||.||++++++.++++|+...-.. ...+|-.
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~------~~~~~g~ 482 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASI------SRRHGGT 482 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCC------CCCCCCc
Confidence 56889999999999853 34555543 2 11 23589999999999999999999987543211 0123445
Q ss_pred chHHHhhhhh-----ceEEEEEEEc
Q 010846 115 GEALASMTYV-----GHVTVTTITK 134 (499)
Q Consensus 115 GeaLaSis~v-----s~l~I~Sr~~ 134 (499)
|.+|+-...+ ++++|.|...
T Consensus 483 GLGL~i~~~i~~~~gG~i~v~s~~~ 507 (919)
T PRK11107 483 GLGLVITQKLVNEMGGDISFHSQPN 507 (919)
T ss_pred chhHHHHHHHHHHhCCEEEEEecCC
Confidence 7777543332 4677877654
No 81
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=96.85 E-value=0.0026 Score=65.01 Aligned_cols=75 Identities=29% Similarity=0.375 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH
Q 010846 41 RPVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
-..+++-.+|.||+..+. ..|+|.++. +.+-.|+|.|.|.|||++|++.+|.||+-- |-....+.|--|.+
T Consensus 342 K~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRv------dkARsR~~gGTGLG 415 (459)
T COG5002 342 KMTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRV------DKARSRKMGGTGLG 415 (459)
T ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhh------hhhhhhcCCCCchh
Confidence 367899999999999864 578888875 456679999999999999999999999853 21223467777888
Q ss_pred HHhh
Q 010846 118 LASM 121 (499)
Q Consensus 118 LaSi 121 (499)
||-.
T Consensus 416 LaIa 419 (459)
T COG5002 416 LAIA 419 (459)
T ss_pred HHHH
Confidence 7643
No 82
>PRK03660 anti-sigma F factor; Provisional
Probab=96.83 E-value=0.011 Score=53.16 Aligned_cols=58 Identities=24% Similarity=0.215 Sum_probs=40.8
Q ss_pred ccCHHHHHHHHHHchhhcCC-----CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 39 IQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 39 i~~~~~~vkELieNSlDA~A-----t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
+..+..++.|++.|++..+. ..|.|.+.. ++.-.|.|.|||.||++ +..++.++.+++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~ 100 (146)
T PRK03660 37 LTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTK 100 (146)
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccC
Confidence 35678899999999997652 347777653 33336999999999974 445566655443
No 83
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.76 E-value=0.0056 Score=73.55 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHchhhcCCC-ceEEEEe-----eC-CeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADAT-SINVVVK-----DG-GLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At-~I~I~i~-----~~-g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++.+||.||+++... .|.|.+. .+ +.-.|.|.|||.||++++++.++++|.+++.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~ 893 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA 893 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc
Confidence 4678999999999998643 3444432 12 2235899999999999999999999998764
No 84
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=96.70 E-value=0.0024 Score=67.15 Aligned_cols=65 Identities=26% Similarity=0.323 Sum_probs=53.9
Q ss_pred CCccccCHHHHHHHHHHchhhcCC---CceEEEEe--eCCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 35 AGEVIQRPVSAVKELVENSLDADA---TSINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 35 ag~vi~~~~~~vkELieNSlDA~A---t~I~I~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
.|+-+ +..+++-.|+-||+||.. ..|.|.+. .++.-.|-|.|||.|-+.+-++.+..+|+|||--
T Consensus 559 ~gd~v-~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 559 MGDAV-SIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred cchhh-hHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 44443 789999999999999974 55777765 3555679999999999999999999999999964
No 85
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=96.69 E-value=0.0062 Score=56.25 Aligned_cols=85 Identities=20% Similarity=0.119 Sum_probs=54.7
Q ss_pred cccCHHHHHHHHHHchhhcCC-----CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCccccccccccccc
Q 010846 38 VIQRPVSAVKELVENSLDADA-----TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSM 111 (499)
Q Consensus 38 vi~~~~~~vkELieNSlDA~A-----t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~ 111 (499)
-+....-||.|++-||+..|= ..|.|.+.. ++.-.|.|.|+|.|++++.++..+.++.+.+.. ++ +
T Consensus 39 ~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--~~------~ 110 (159)
T TIGR01924 39 DIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--DD------L 110 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--cc------C
Confidence 344577899999999999862 367776643 344469999999999988776555444333221 11 1
Q ss_pred CccchHHHhhhhhce-EEEE
Q 010846 112 GFRGEALASMTYVGH-VTVT 130 (499)
Q Consensus 112 GfrGeaLaSis~vs~-l~I~ 130 (499)
.-.|.+|+-+..+++ +.+.
T Consensus 111 ~~~G~GL~Li~~L~D~v~~~ 130 (159)
T TIGR01924 111 REGGLGLFLIETLMDEVEVY 130 (159)
T ss_pred CCCccCHHHHHHhccEEEEE
Confidence 123566777777763 5554
No 86
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=96.57 E-value=0.012 Score=60.48 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHchhh-cCCCceEEEEeeCCe-eEEEEEECCCCCCc
Q 010846 40 QRPVSAVKELVENSLD-ADATSINVVVKDGGL-KLIQVSDDGHGIRY 84 (499)
Q Consensus 40 ~~~~~~vkELieNSlD-A~At~I~I~i~~~g~-~~i~V~DNG~GI~~ 84 (499)
...+..+.|++.|=.. |.|+.|.|.+..++- -.+.|+|||.|+++
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~ 455 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPP 455 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCC
Confidence 4688999999999876 889999999987654 56899999999995
No 87
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=96.55 E-value=0.0042 Score=62.55 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHHHHHHchhhcCC------CceEEE--------Eee----CCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 42 PVSAVKELVENSLDADA------TSINVV--------VKD----GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A------t~I~I~--------i~~----~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
+.+|+..||.||..|.+ ..|.++ +.. -.+ .|.|.|||.||+++-.+.+|.++.|+|-.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l-~leViDNGPGVP~~L~~~lF~P~Vs~r~~ 317 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLAL-PLEVIDNGPGVPPDLQDHLFYPMVSGREG 317 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeee-eeEEecCCCCCChHHhhhccccccccCCC
Confidence 67899999999999988 344433 321 123 48899999999999999999999999864
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=96.46 E-value=0.0048 Score=69.23 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=45.4
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccC
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (499)
..+|+-.|||||+-... ++|.|.+.. ...-.+.|.|||.||++++++.+|.+|++-
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 47899999999999764 446666543 333469999999999999999999999875
No 89
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=96.41 E-value=0.017 Score=62.98 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=35.5
Q ss_pred HHHHHHHHHHchhhc-CCCceEEEEee-CCeeEEEEEECCCCCCccc
Q 010846 42 PVSAVKELVENSLDA-DATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (499)
Q Consensus 42 ~~~~vkELieNSlDA-~At~I~I~i~~-~g~~~i~V~DNG~GI~~~d 86 (499)
...++.|++.||+.+ ++..|.|++.. ++.-.|.|+|||.||++++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~ 457 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPGS 457 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcCC
Confidence 456899999999996 46778888754 4444699999999999753
No 90
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=96.30 E-value=0.006 Score=66.38 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=48.7
Q ss_pred HHHHHHHHHHchhhcCCC---------ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 42 PVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At---------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
.-+|.-.|+.||.+|... .|.++.+. +|.-.+.|.|||.|.+.+++..+.++|.|.|-.
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K 669 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK 669 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc
Confidence 568899999999998532 36666653 666679999999999999999999999998754
No 91
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=96.19 E-value=0.024 Score=49.43 Aligned_cols=77 Identities=23% Similarity=0.253 Sum_probs=51.9
Q ss_pred ccCHHHHHHHHHHchhhcCCC-----ceEEEEe--eCCeeEEEEEECCCCCCcccHHhhhhhcccCCccccccccccccc
Q 010846 39 IQRPVSAVKELVENSLDADAT-----SINVVVK--DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSM 111 (499)
Q Consensus 39 i~~~~~~vkELieNSlDA~At-----~I~I~i~--~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~ 111 (499)
.....-|+.|++-|++.+|.. .|.|.+. .+++ .|.|.|+|.|+++...+..-..-. ...
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l-~i~v~D~G~~~d~~~~~~~~~~~~-------------~~~ 94 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRL-RISVRDNGPGFDPEQLPQPDPWEP-------------DSL 94 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEE-EEEEEECCCCCChhhccCcccccC-------------CCC
Confidence 346788999999999998764 5777754 3444 599999999988765432211000 223
Q ss_pred CccchHHHhhhhhc-eEEE
Q 010846 112 GFRGEALASMTYVG-HVTV 129 (499)
Q Consensus 112 GfrGeaLaSis~vs-~l~I 129 (499)
.-+|.+|+-|.+++ ++.+
T Consensus 95 ~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 95 REGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCCCcCHHHHHHHHcEEEE
Confidence 44566777787776 5776
No 92
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=96.18 E-value=0.0077 Score=64.71 Aligned_cols=45 Identities=31% Similarity=0.491 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHchhh-cCCCceEEEEeeC-CeeEEEEEECCCCCCcc
Q 010846 41 RPVSAVKELVENSLD-ADATSINVVVKDG-GLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 41 ~~~~~vkELieNSlD-A~At~I~I~i~~~-g~~~i~V~DNG~GI~~~ 85 (499)
..-++|+|-+-|++. |.|+.|.|.+..+ |--.+.|+|||+||+..
T Consensus 481 HlLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 481 HLLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 356889999999998 7899999999764 66689999999999975
No 93
>PRK13560 hypothetical protein; Provisional
Probab=95.92 E-value=0.034 Score=63.28 Aligned_cols=44 Identities=30% Similarity=0.439 Sum_probs=34.2
Q ss_pred HHHHHHHHHHchhhcC-----CCceEEEEee--CCeeEEEEEECCCCCCcc
Q 010846 42 PVSAVKELVENSLDAD-----ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 42 ~~~~vkELieNSlDA~-----At~I~I~i~~--~g~~~i~V~DNG~GI~~~ 85 (499)
...++.+|+.||+++. +..|.|.+.. ++.-.|.|.|||+||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 3458899999999973 2467777754 455579999999999975
No 94
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=95.89 E-value=0.038 Score=61.10 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=35.9
Q ss_pred HHHHHHHHHHchhhc-CCCceEEEEee-CCeeEEEEEECCCCCCcc
Q 010846 42 PVSAVKELVENSLDA-DATSINVVVKD-GGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 42 ~~~~vkELieNSlDA-~At~I~I~i~~-~g~~~i~V~DNG~GI~~~ 85 (499)
...++.|+|.||+.+ +|+.|.|.+.. ++.-.|.|.|||.||+++
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 567899999999995 46788888864 344469999999999975
No 95
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=95.74 E-value=0.021 Score=61.65 Aligned_cols=49 Identities=33% Similarity=0.487 Sum_probs=39.3
Q ss_pred cCHHHHHHHHHHchhhcCCC------ceEEEEee-CCeeEEEEEECCCCCCcccHH
Q 010846 40 QRPVSAVKELVENSLDADAT------SINVVVKD-GGLKLIQVSDDGHGIRYEDLP 88 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~ 88 (499)
..|.-++.=|||||+-||-. .|.|.+.. ++.-.++|.|||.||+++...
T Consensus 349 ~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~ 404 (456)
T COG2972 349 IDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLE 404 (456)
T ss_pred cCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHH
Confidence 57888999999999999842 57777654 466689999999999976554
No 96
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=95.44 E-value=0.022 Score=63.99 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=98.4
Q ss_pred hcCCccccCHHHHHHHHHHchhh----cCCCceEEEEeeCCeeEEEEEECCCCCCcccHH--------hhhh-hcccCCc
Q 010846 33 IAAGEVIQRPVSAVKELVENSLD----ADATSINVVVKDGGLKLIQVSDDGHGIRYEDLP--------ILCE-RHTTSKL 99 (499)
Q Consensus 33 i~ag~vi~~~~~~vkELieNSlD----A~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~--------~~~~-r~~TSK~ 99 (499)
+-.+..+..+..+.-|.+.||.| ++-..|.+.|+...- .|.|.+||.||+-+..+ +++. -|+.|++
T Consensus 45 ~~~~t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~-~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny 123 (842)
T KOG0355|consen 45 MVQRTYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKN-EISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNY 123 (842)
T ss_pred eeEeecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCC-EEEEEeCCCcceeeecccccccchHHHHhhhhhcccc
Confidence 33347788999999999999998 445688998876543 59999999999987642 3333 3555665
Q ss_pred ccccccccccccCccchHHHhhhhhce--EEEEEEEcCCccEEEEEEEcCeeec-cc--ccccCCCceEEEEEeeechhh
Q 010846 100 SKYEDLQSIKSMGFRGEALASMTYVGH--VTVTTITKGHLHGYRVSYRDGVMES-EP--KACAAVKGTQIMVENLFYNMI 174 (499)
Q Consensus 100 ~~~~dl~~~~t~GfrGeaLaSis~vs~--l~I~Sr~~~~~~~~~~~~~~g~~~~-~~--~~~~~~~GTtV~v~~LF~n~P 174 (499)
. |-.+-.+-|..|-+ |-+|.+-+ .++.|-.......|+..+.++.... ++ .+...+.+|.|++. |
T Consensus 124 ~---d~ekK~tggrngyg-akLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~i~~~~~~~yTkitF~------P 193 (842)
T KOG0355|consen 124 D---DDEKKVTGGRNGYG-AKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDEDYTKITFS------P 193 (842)
T ss_pred C---CCccccccCCCccc-eeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCceeecCCCCCcceEEeC------c
Confidence 3 43333444444433 56666643 4444444444445666665554321 22 23455569999996 6
Q ss_pred hhhhhccCCchhH-HHHHHHHHHHH--hhCCCeEEEEEECC
Q 010846 175 ARRKTLQNSSDDY-TKIVDLLSRMA--IHHTNVSFSCRKHG 212 (499)
Q Consensus 175 vRrk~lk~~~~e~-~~I~~~v~~yA--l~~p~v~f~l~~~g 212 (499)
.-.++.-. ++ +.++.++.+.+ +.-+-....+..++
T Consensus 194 Dl~~F~m~---eLD~Div~l~~rr~~d~a~~~~~vkv~ln~ 231 (842)
T KOG0355|consen 194 DLEKFKMK---ELDDDIVALMARRAYDLAGSVKSVKVELNG 231 (842)
T ss_pred ChHhcCch---hhcchHHHhHHhhhhhhcccccceeeeecC
Confidence 55554311 22 34566655443 33333444444444
No 97
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.30 E-value=0.048 Score=61.91 Aligned_cols=54 Identities=33% Similarity=0.455 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHchhhcCC--------------CceEEEEe-eCCeeEEEEEECCCCCCcccHH-hhhhhc
Q 010846 41 RPVSAVKELVENSLDADA--------------TSINVVVK-DGGLKLIQVSDDGHGIRYEDLP-ILCERH 94 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A--------------t~I~I~i~-~~g~~~i~V~DNG~GI~~~dl~-~~~~r~ 94 (499)
.+..=+--||.||+|.|- -.|.++-. .||.-.|.|.|||.||+++-+. ++.+|+
T Consensus 432 ~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErG 501 (716)
T COG0643 432 RLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERG 501 (716)
T ss_pred HhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcC
Confidence 344457789999999983 36888875 4667789999999999998653 333443
No 98
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=95.10 E-value=0.04 Score=57.47 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=39.0
Q ss_pred cCHHHHHHHHHHchhh-cCCCceEEEEee-CCeeEEEEEECCCCCCccc
Q 010846 40 QRPVSAVKELVENSLD-ADATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (499)
Q Consensus 40 ~~~~~~vkELieNSlD-A~At~I~I~i~~-~g~~~i~V~DNG~GI~~~d 86 (499)
....-+|.|.|-|++- |+|++|.|.+.. ++.-.+.|.|||.|.+++.
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~ 326 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPDK 326 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCccc
Confidence 4668899999999998 679999999964 3334699999999998754
No 99
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=93.65 E-value=0.13 Score=50.11 Aligned_cols=46 Identities=30% Similarity=0.322 Sum_probs=35.9
Q ss_pred cCHHHHHHHHHHchhhcCCC-----ceEEEEee--CC-eeEEEEEECCCCCCcc
Q 010846 40 QRPVSAVKELVENSLDADAT-----SINVVVKD--GG-LKLIQVSDDGHGIRYE 85 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At-----~I~I~i~~--~g-~~~i~V~DNG~GI~~~ 85 (499)
..+.-++.||+-||+..|+. .|.|.+.. ++ ...+.|.|||.|++.+
T Consensus 121 ~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 121 VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 35678899999999998875 57777653 43 3579999999999864
No 100
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=93.34 E-value=0.66 Score=42.32 Aligned_cols=92 Identities=26% Similarity=0.252 Sum_probs=53.5
Q ss_pred cccCHHHHHHHHHHchhhcC-C-----CceEEEEe-eCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccc
Q 010846 38 VIQRPVSAVKELVENSLDAD-A-----TSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKS 110 (499)
Q Consensus 38 vi~~~~~~vkELieNSlDA~-A-----t~I~I~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t 110 (499)
-+.+...||-|++.|++.++ . ..|.|.+. .++.-.|.|.|-|.||. ++.....+..+.. +++. .
T Consensus 37 ~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~~~~~----~~~~-~-- 107 (146)
T COG2172 37 DIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPGDTTA----EGLQ-E-- 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCCCCCC----cccc-c--
Confidence 34578899999999999964 3 45666553 23344699999998876 5555555543322 1211 1
Q ss_pred cCccchHHHhhhhhc-eEEEEEEEcCCccEEE
Q 010846 111 MGFRGEALASMTYVG-HVTVTTITKGHLHGYR 141 (499)
Q Consensus 111 ~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~ 141 (499)
| |.+|+-+-.+. .+++........++.+
T Consensus 108 -~--G~Gl~l~~~~~D~~~~~~~~~~~~~~~~ 136 (146)
T COG2172 108 -G--GLGLFLAKRLMDEFSYERSEDGRNRLTK 136 (146)
T ss_pred -c--cccHHHHhhhheeEEEEeccCCceEEEE
Confidence 2 34444454444 5666644444333333
No 101
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=93.33 E-value=0.16 Score=55.74 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=34.6
Q ss_pred HHHHHHHHHHchhhcC-CCceEEEEee--CCeeEEEEEECCCCCCcc
Q 010846 42 PVSAVKELVENSLDAD-ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 42 ~~~~vkELieNSlDA~-At~I~I~i~~--~g~~~i~V~DNG~GI~~~ 85 (499)
...++.||+.||+.++ +..|.|.+.. ++.-.|.|.|||+||+++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~ 518 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGEL 518 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCCC
Confidence 4578999999999954 4578888753 454569999999999974
No 102
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=92.81 E-value=0.42 Score=52.70 Aligned_cols=96 Identities=17% Similarity=0.177 Sum_probs=60.5
Q ss_pred HHHHHHHHHHchhhcCC---CceEEEEee--CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccch
Q 010846 42 PVSAVKELVENSLDADA---TSINVVVKD--GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGE 116 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A---t~I~I~i~~--~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGe 116 (499)
..++...||.||+-.|. ..|.|..+. +++ .+.|.|||.||++.-++.++.-|-- +.+..-|+-.|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~-t~sV~dng~Gi~~a~~~riF~iFqR--------l~s~~~y~gtG~ 707 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAERQEDEW-TFSVRDNGIGIDPAYFERIFVIFQR--------LHSRDEYLGTGL 707 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeeccCCce-EEEecCCCCCcCHHHHHHHHHHHHh--------cCchhhhcCCCc
Confidence 45677889999999875 458888653 445 5999999999999988877644321 111223444677
Q ss_pred HHHh---hhhh--ceEEEEEEEcCCccEEEEEEEcC
Q 010846 117 ALAS---MTYV--GHVTVTTITKGHLHGYRVSYRDG 147 (499)
Q Consensus 117 aLaS---is~v--s~l~I~Sr~~~~~~~~~~~~~~g 147 (499)
+|+- |..+ +++.+.|+..+. .++......+
T Consensus 708 GL~I~kkI~e~H~G~i~vEs~~gEg-sTF~f~lp~~ 742 (750)
T COG4251 708 GLAICKKIAERHQGRIWVESTPGEG-STFYFTLPVG 742 (750)
T ss_pred cHHHHHHHHHHhCceEEEeecCCCc-eeEEEEeecC
Confidence 7754 3333 357777764332 3444444333
No 103
>PRK13559 hypothetical protein; Provisional
Probab=92.54 E-value=0.19 Score=51.73 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHchhhcCC-----CceEEEE--ee-CCeeEEEEEECCCCCCcc
Q 010846 41 RPVSAVKELVENSLDADA-----TSINVVV--KD-GGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A-----t~I~I~i--~~-~g~~~i~V~DNG~GI~~~ 85 (499)
.+..++.||+.||+.+|+ ..|.|.+ .. ++.-.|.|.|||.|++++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 356799999999999964 3788887 32 444568999999998754
No 104
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=91.72 E-value=0.45 Score=49.42 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=53.4
Q ss_pred ccC-HHHHHHHHHHchhhcC----------CCceEEEEeeCCee-EEEEEECCCCCCcccHHhhhhhcccCCcccccc-c
Q 010846 39 IQR-PVSAVKELVENSLDAD----------ATSINVVVKDGGLK-LIQVSDDGHGIRYEDLPILCERHTTSKLSKYED-L 105 (499)
Q Consensus 39 i~~-~~~~vkELieNSlDA~----------At~I~I~i~~~g~~-~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~d-l 105 (499)
|.+ +...+-||+.||..|- -.-|.|.|..|.-+ .|.|.|-|-||+.++++.++.-.++.--..-.| .
T Consensus 257 vPshL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~ 336 (414)
T KOG0787|consen 257 VPSHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNN 336 (414)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCC
Confidence 444 5678999999999983 23488888654322 689999999999999999997655443222222 2
Q ss_pred --ccccccCccchH
Q 010846 106 --QSIKSMGFRGEA 117 (499)
Q Consensus 106 --~~~~t~GfrGea 117 (499)
...+.||| |.-
T Consensus 337 ~~~plaGfG~-GLP 349 (414)
T KOG0787|consen 337 RTAPLAGFGF-GLP 349 (414)
T ss_pred CcCccccccc-CCc
Confidence 24567777 443
No 105
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=91.24 E-value=0.25 Score=52.82 Aligned_cols=45 Identities=31% Similarity=0.460 Sum_probs=34.1
Q ss_pred cCHHHHHHHHHHchhhcCC------CceEEEEe--eCCeeEEEEEECCCCCCcc
Q 010846 40 QRPVSAVKELVENSLDADA------TSINVVVK--DGGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~A------t~I~I~i~--~~g~~~i~V~DNG~GI~~~ 85 (499)
.=|.=.+.=||||||-.|- -.|.|.+. +.++ .|.|+|||.||+++
T Consensus 455 ~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l-~i~VeDng~li~p~ 507 (557)
T COG3275 455 QIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADL-RIEVEDNGGLIQPD 507 (557)
T ss_pred cCchhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeE-EEEEecCCCCcCCC
Confidence 3467778899999998773 34666654 4444 69999999999986
No 106
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=84.35 E-value=1.3 Score=45.44 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHHchh-hcCCCceEEEEee-CCeeEEEEEECCCCCCccc
Q 010846 40 QRPVSAVKELVENSL-DADATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (499)
Q Consensus 40 ~~~~~~vkELieNSl-DA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~d 86 (499)
+.++.++.|-+-|== -||||.|.|.+.. ++.-.+.|.|||.|.+...
T Consensus 358 talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~ 406 (459)
T COG4564 358 TALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKE 406 (459)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchh
Confidence 456778888887743 3799999999975 5555799999999998543
No 107
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=70.82 E-value=4.4 Score=45.67 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=26.8
Q ss_pred hccCCeEEEEEcCceeEEEeCCcEEEEeccC
Q 010846 467 IVRHCSFIGMADDVYALLQHNTHMYLANVVS 497 (499)
Q Consensus 467 ~~~~~~~VG~vd~~~~liQ~~t~Lylvd~~~ 497 (499)
-+....+||+++.+|+|+|++.+|||||+-+
T Consensus 427 ~~~~~~vigQv~~~YIl~e~~~~L~iIDQHA 457 (617)
T PRK00095 427 SFPLGYALGQLHGTYILAENEDGLYLVDQHA 457 (617)
T ss_pred cCcCceEeEEEcCEEEEEEeCCcEEEEEHHH
Confidence 3445679999999999999999999999853
No 108
>PF14501 HATPase_c_5: GHKL domain
Probab=57.42 E-value=68 Score=26.55 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHchhhcC-----CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCcc
Q 010846 41 RPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFR 114 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~-----At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~Gfr 114 (499)
++..++.-|++||++|. ...|.|.+.. ++.-.|.|...-.+ +...+. +++ ..-+.+
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~~~~----~~~~~~----~~~----------~~~~~~ 66 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENSCEK----EIEKLE----SSS----------SKKKGH 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCC----cccccc----ccc----------cCCCCC
Confidence 46778999999999974 3467887764 55556666665333 111111 111 123567
Q ss_pred chHHHhhhhh
Q 010846 115 GEALASMTYV 124 (499)
Q Consensus 115 GeaLaSis~v 124 (499)
|.+|.++..+
T Consensus 67 G~GL~~v~~i 76 (100)
T PF14501_consen 67 GIGLKNVKKI 76 (100)
T ss_pred CcCHHHHHHH
Confidence 8899888765
No 109
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=41.83 E-value=24 Score=40.58 Aligned_cols=85 Identities=26% Similarity=0.275 Sum_probs=46.1
Q ss_pred HHHHHHHHHchhh---cCCCceEEE---EeeCC-eeEEEEE-----ECCCCCCcccHHhhhhhcccCCcccccccccccc
Q 010846 43 VSAVKELVENSLD---ADATSINVV---VKDGG-LKLIQVS-----DDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKS 110 (499)
Q Consensus 43 ~~~vkELieNSlD---A~At~I~I~---i~~~g-~~~i~V~-----DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t 110 (499)
..++.|||+||+| .||+-+.|. ...++ ..-..|+ |||-||.++-+..----.+.+|+ .++.--..-+
T Consensus 148 ~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~-e~~~tv~q~~ 226 (775)
T KOG1845|consen 148 KGAIAELLDNALDEITNGATFVRVDYINPVMDIFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKK-EANSTVGQYG 226 (775)
T ss_pred cChhhhhccccccccccccceEEeeeecccccccceeEEeeccceeccccccCHHHHHHHHHhhhhhhh-hhhhhhhhhc
Confidence 3689999999999 567764443 12233 3444555 77999998755432222233444 2221111223
Q ss_pred cCccchHHHhhhhhc-eEEEEEE
Q 010846 111 MGFRGEALASMTYVG-HVTVTTI 132 (499)
Q Consensus 111 ~GfrGeaLaSis~vs-~l~I~Sr 132 (499)
.||.| |...++ .+.+.+|
T Consensus 227 ~gfkt----st~rlGa~~i~~~R 245 (775)
T KOG1845|consen 227 NGFKT----STMRLGADAIVFSR 245 (775)
T ss_pred ccccc----chhhhccceeEeeh
Confidence 34443 444465 4556666
No 110
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=35.26 E-value=29 Score=36.23 Aligned_cols=137 Identities=19% Similarity=0.264 Sum_probs=77.0
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCccc
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSK 101 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~ 101 (499)
++.+|.+-.|-+.+. .-=.-|||.-|||+||++|.|-| ||. -=.|-|.|| +..|+-+|.-.-
T Consensus 96 L~lVp~~~rnpl~~t------s~GtGeLI~~Ald~Ga~~IiiGi--GGS---ATnDgG~Gm----l~ALG~~f~d~~--- 157 (378)
T COG1929 96 LHLVPPEKRNPLITT------SYGTGELIKHALDAGAKHIIIGI--GGS---ATNDGGAGM----LQALGAQFLDAD--- 157 (378)
T ss_pred CCCCCccccCccccc------cccHHHHHHHHHhCCCcEEEEec--ccc---ccCCchHHH----HHHhCchhhhcc---
Confidence 555555555433322 22378999999999999999866 442 245788886 566776666432
Q ss_pred ccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhhhhcc
Q 010846 102 YEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTLQ 181 (499)
Q Consensus 102 ~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk~lk 181 (499)
-...|+-|-.|+.|.++..=....|- +.+.+.+-.+ -..|--+++|.+-..- |..- .
T Consensus 158 ------g~~i~~gG~~L~~l~~id~s~ld~rl--~~v~i~va~D------V~nPL~G~~GAs~vFG------PQKG--a- 214 (378)
T COG1929 158 ------GNDLGFGGGSLANLASIDLSNLDPRL--ADVEIEVACD------VDNPLCGPQGASAVFG------PQKG--A- 214 (378)
T ss_pred ------CCCccccchhhhhhhhcchhhCCccc--cccEEEEEec------CCCCCcCCCCceeeec------CccC--C-
Confidence 24578889888887765321111122 2233333222 1124445678776543 3211 1
Q ss_pred CCchhHHHHHHHHHHHHhh
Q 010846 182 NSSDDYTKIVDLLSRMAIH 200 (499)
Q Consensus 182 ~~~~e~~~I~~~v~~yAl~ 200 (499)
..+.+..+-..++.||..
T Consensus 215 -t~~~v~~lD~~l~hfa~~ 232 (378)
T COG1929 215 -TPEMVEELDQALSHFAEV 232 (378)
T ss_pred -CHHHHHHHHHHHHHHHHH
Confidence 123455666677777743
No 111
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.25 E-value=1.3e+02 Score=27.56 Aligned_cols=51 Identities=25% Similarity=0.136 Sum_probs=31.0
Q ss_pred ccccCHHHHHHHHHHchhhcCCC-ceEEEEeeCCee-EEEEEECCCCCCcccH
Q 010846 37 EVIQRPVSAVKELVENSLDADAT-SINVVVKDGGLK-LIQVSDDGHGIRYEDL 87 (499)
Q Consensus 37 ~vi~~~~~~vkELieNSlDA~At-~I~I~i~~~g~~-~i~V~DNG~GI~~~dl 87 (499)
+|-++..-.+.||||||+...|+ .|.|......-+ .+.|...-.+=+..++
T Consensus 59 evrhsvgYl~NELiENAVKfra~geIvieasl~s~~f~~kvsN~vd~~t~~~f 111 (184)
T COG5381 59 EVRHSVGYLANELIENAVKFRATGEIVIEASLYSHKFIFKVSNIVDLPTTIDF 111 (184)
T ss_pred HHhhhHHHHHHHHHHhhhcccCCCcEEEEEEeccceEEEEecccCCCccHHHH
Confidence 34467778899999999998887 566665543322 2444433333333333
No 112
>PRK13669 hypothetical protein; Provisional
Probab=25.34 E-value=63 Score=26.33 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=25.6
Q ss_pred eEEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHh
Q 010846 257 VFKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAA 300 (499)
Q Consensus 257 ~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~ 300 (499)
.+.-.|..|.-..-.+ ..|-+||||+|....=...+.++|+.
T Consensus 30 dVie~gCls~CG~C~~--~~FAlVng~~V~a~t~eeL~~kI~~~ 71 (78)
T PRK13669 30 DVLEYGCLGYCGICSE--GLFALVNGEVVEGETPEELVENIYAH 71 (78)
T ss_pred eEEEcchhhhCcCccc--CceEEECCeEeecCCHHHHHHHHHHH
Confidence 3444555554433322 24689999999887655555666554
No 113
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=24.68 E-value=32 Score=30.92 Aligned_cols=36 Identities=31% Similarity=0.447 Sum_probs=3.3
Q ss_pred cCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEE
Q 010846 40 QRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVS 76 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~ 76 (499)
..=-.-|||||+.|-|+ |..|.|-+..+|...+++.
T Consensus 89 s~nI~~IrelI~qAR~~-An~IkV~m~F~g~s~velr 124 (138)
T PF06009_consen 89 SRNISRIRELIAQARDA-ANRIKVSMKFNGNSGVELR 124 (138)
T ss_dssp ------------------------B-------EEEE-
T ss_pred HHHHHHHHHHHHHHHHH-HhheeeeeEECCCceeeeC
Confidence 33356799999999999 8889999988876656554
No 114
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=21.75 E-value=67 Score=21.24 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=9.7
Q ss_pred CCeeEEEEEECCC
Q 010846 68 GGLKLIQVSDDGH 80 (499)
Q Consensus 68 ~g~~~i~V~DNG~ 80 (499)
+|-..|+|.|+|.
T Consensus 11 Dgn~qITIeD~GP 23 (30)
T PF07492_consen 11 DGNFQITIEDTGP 23 (30)
T ss_pred CCCcEEEEecCCC
Confidence 4445699999996
No 115
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.66 E-value=74 Score=31.93 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=16.9
Q ss_pred CCceEEEEeeCCeeEEEEEECCCCC
Q 010846 58 ATSINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 58 At~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
+++|+|.=..+.+. ++|+|||.|-
T Consensus 127 ~kEv~v~KsedalG-lTITDNG~Gy 150 (334)
T KOG3938|consen 127 AKEVEVVKSEDALG-LTITDNGAGY 150 (334)
T ss_pred ceeEEEEecccccc-eEEeeCCcce
Confidence 45666654555554 8999999994
No 116
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=21.31 E-value=1.6e+02 Score=29.05 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=42.8
Q ss_pred EEEcCcccCChHHHHHHHHHHHhcCCC-CCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 010846 278 LFVNDRLVECAPLKRAVEIVYAATFPK-ASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ 337 (499)
Q Consensus 278 lFIN~R~V~~~~L~kaI~~~y~~~lpk-~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e 337 (499)
...||||++...+...+..+=..-.|. +.-|--+|.+ .|+.+=+=.-|.||.|.|..+
T Consensus 35 ~i~aG~Plt~~~l~~l~~~l~~~~~~~~g~lp~nvL~~--~~~~~vWy~p~~~R~v~F~~~ 93 (228)
T TIGR03737 35 VIGAGRPLTRDDLMELVRQLAQQQAPDLEFLDPNVLAL--SPGLMVWWTPAATRRVFFQSK 93 (228)
T ss_pred eecCCccCCHHHHHHHHHHHHhhccCCCcccCccEEEe--CCCeEEEEecCceEEEEEecc
Confidence 457999999998887777763433344 3345556666 778888889999999999733
No 117
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.30 E-value=1.8e+02 Score=25.33 Aligned_cols=37 Identities=24% Similarity=0.526 Sum_probs=25.7
Q ss_pred ceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEE
Q 010846 274 TTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIV 315 (499)
Q Consensus 274 ~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~ 315 (499)
..+|||||+- + +.....+.++|..|-. .--|.||.-.
T Consensus 70 ~slfl~Vn~~-~--p~~~~~~~~lY~~~kd--~DGfLyl~Ys 106 (112)
T cd01611 70 KALFLFVNNS-L--PPTSATMSQLYEEHKD--EDGFLYMTYS 106 (112)
T ss_pred ceEEEEECCc-c--CCchhHHHHHHHHhCC--CCCEEEEEEe
Confidence 3478999993 3 4456788899998853 3457777654
No 118
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=20.82 E-value=68 Score=33.93 Aligned_cols=62 Identities=31% Similarity=0.467 Sum_probs=44.2
Q ss_pred HHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHHHhhhhh
Q 010846 45 AVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYV 124 (499)
Q Consensus 45 ~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~v 124 (499)
=+-|||..++|.||++|-|-+ ||. -..|=|.|| |..|+-+|....-+. +..-|.+|..|.++
T Consensus 112 G~GelI~~Al~~G~~~iiiGl--GGS---ATnDgG~Gm----L~ALG~~f~d~~g~~---------l~~~g~~L~~i~~i 173 (375)
T TIGR00045 112 GTGELIRHALDHGAKKIILGI--GGS---ATNDGGAGM----LQALGVRFLDADGQE---------LGPGGGALAELASI 173 (375)
T ss_pred cHHHHHHHHHHCCCCEEEEec--cCc---ccCchHHHH----HHHcCChhhhhCcCC---------CCCchHhHHhhhhc
Confidence 489999999999999987765 443 367889996 677777777653321 23347787777664
No 119
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=20.51 E-value=1.1e+02 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=24.3
Q ss_pred HHHHHHHchhhcCCCceEEEEeeCC-eeEEEEEECCC
Q 010846 45 AVKELVENSLDADATSINVVVKDGG-LKLIQVSDDGH 80 (499)
Q Consensus 45 ~vkELieNSlDA~At~I~I~i~~~g-~~~i~V~DNG~ 80 (499)
-+|+|+++|-+.|-- |+.+ .|. .+.|.|.|+|+
T Consensus 25 p~Krl~~~ak~~~~l-IdaT--~Grktrsviitdsgh 58 (73)
T PF04025_consen 25 PIKRLIQEAKEEGKL-IDAT--YGRKTRSVIITDSGH 58 (73)
T ss_pred hHHHHHHHHHHcCcE-EEee--CCCceeEEEEEcCCc
Confidence 499999999998742 3333 332 55799999998
Done!