Query 010846
Match_columns 499
No_of_seqs 270 out of 2134
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na3_A DNA mismatch repair pro 100.0 2E-84 6.8E-89 664.5 31.3 344 18-365 5-348 (348)
2 3h4l_A DNA mismatch repair pro 100.0 1.8E-77 6.1E-82 618.1 27.8 334 20-356 4-362 (367)
3 1h7s_A PMS1 protein homolog 2; 100.0 2.9E-72 9.8E-77 580.8 30.8 334 18-353 11-364 (365)
4 1b63_A MUTL; DNA mismatch repa 100.0 1.5E-70 5E-75 562.7 32.6 326 21-352 4-332 (333)
5 1s16_A Topoisomerase IV subuni 100.0 1.7E-31 5.8E-36 278.0 28.4 287 19-331 7-336 (390)
6 3cwv_A DNA gyrase, B subunit, 100.0 1.5E-30 5.2E-35 268.8 29.5 294 30-354 14-346 (369)
7 1ei1_A DNA gyrase B, GYRB; ATP 100.0 7.2E-31 2.5E-35 273.2 25.6 286 19-331 6-338 (391)
8 3fv5_A DNA topoisomerase 4 sub 100.0 1.2E-31 4.1E-36 255.3 14.9 167 32-212 6-192 (201)
9 1y4s_A Chaperone protein HTPG; 99.9 1.8E-27 6.1E-32 256.6 17.1 291 22-351 13-355 (559)
10 1kij_A DNA gyrase subunit B; t 99.9 1.5E-26 5E-31 241.0 22.8 276 20-319 6-328 (390)
11 2ioq_A Chaperone protein HTPG; 99.9 1.2E-27 4.2E-32 260.8 14.3 291 21-350 12-354 (624)
12 4duh_A DNA gyrase subunit B; s 99.9 2.5E-25 8.4E-30 214.2 14.8 181 19-212 7-209 (220)
13 2o1u_A Endoplasmin; GRP94, HSP 99.9 2.9E-25 9.8E-30 242.9 12.5 286 21-350 30-378 (666)
14 3t0h_A Heat shock protein HSP 99.9 2.2E-25 7.6E-30 215.6 7.4 164 21-202 17-209 (228)
15 4emv_A DNA topoisomerase IV, B 99.9 1.2E-23 4.1E-28 203.0 14.8 181 18-212 12-215 (226)
16 3o0i_A HSP90AA1 protein; HSP90 99.9 1.5E-24 5.1E-29 212.2 7.1 168 21-203 45-238 (256)
17 1zxm_A TOPO IIA ATPase, DNA to 99.9 2.4E-23 8.3E-28 216.7 15.6 255 21-303 5-314 (400)
18 2ior_A Chaperone protein HTPG; 99.9 1.1E-23 3.7E-28 205.2 8.2 168 19-202 30-227 (235)
19 3ttz_A DNA gyrase subunit B; p 99.9 3.5E-22 1.2E-26 189.4 13.1 165 21-212 6-182 (198)
20 3lnu_A Topoisomerase IV subuni 99.9 1.8E-21 6E-26 202.3 16.3 307 18-354 25-378 (408)
21 2gqp_A Endoplasmin; GRP94, HSP 99.8 1.5E-20 5.1E-25 183.1 11.5 172 21-210 17-221 (236)
22 1yc1_A HSP 86, heat shock prot 99.8 2.9E-20 9.8E-25 183.7 9.3 166 22-202 54-243 (264)
23 2wer_A ATP-dependent molecular 99.8 1.8E-19 6.3E-24 173.7 10.0 172 21-207 11-208 (220)
24 2q2e_B Type 2 DNA topoisomeras 99.7 6.3E-19 2.2E-23 192.4 3.0 201 40-266 36-264 (621)
25 1mu5_A Type II DNA topoisomera 99.7 2.1E-16 7.2E-21 168.2 17.2 156 40-213 31-211 (471)
26 1qy5_A Endoplasmin; GRP94, NEC 99.7 2E-17 6.7E-22 163.6 8.2 170 21-209 13-216 (269)
27 2zbk_B Type 2 DNA topoisomeras 99.7 2E-16 6.7E-21 170.4 16.3 155 40-213 30-210 (530)
28 1pvg_A DNA topoisomerase II; G 99.6 1.5E-15 5.1E-20 158.8 13.9 179 21-210 16-244 (418)
29 3rbn_A DNA mismatch repair pro 99.6 2E-16 6.8E-21 155.6 4.0 60 440-499 30-89 (284)
30 3peh_A Endoplasmin homolog; st 99.6 4.1E-15 1.4E-19 146.9 12.5 170 22-210 32-232 (281)
31 2cg9_A ATP-dependent molecular 99.6 5.1E-15 1.8E-19 162.2 12.4 163 22-206 12-207 (677)
32 3nmq_A Heat shock protein HSP 99.5 7.7E-15 2.6E-19 142.1 8.5 162 22-202 25-214 (239)
33 3ied_A Heat shock protein; HSP 99.2 1.6E-11 5.5E-16 119.1 9.3 127 60-201 120-263 (272)
34 4gfh_A DNA topoisomerase 2; to 99.1 6.3E-10 2.2E-14 129.2 15.6 181 1-203 1-229 (1177)
35 1id0_A PHOQ histidine kinase; 98.3 3.4E-06 1.2E-10 74.3 10.2 59 41-99 44-103 (152)
36 1bxd_A ENVZ(290-450), protein 98.2 3.6E-06 1.2E-10 75.2 9.5 59 41-99 47-106 (161)
37 3jz3_A Sensor protein QSEC; he 98.2 1.7E-06 5.9E-11 80.7 6.9 71 42-124 118-190 (222)
38 1th8_A Anti-sigma F factor; SP 98.2 1E-05 3.6E-10 71.1 11.6 75 40-126 38-118 (145)
39 2c2a_A Sensor histidine kinase 98.2 9.8E-06 3.4E-10 78.0 11.6 59 41-99 138-202 (258)
40 1i58_A Chemotaxis protein CHEA 98.2 5.1E-06 1.7E-10 76.3 8.9 77 41-124 47-162 (189)
41 1r62_A Nitrogen regulation pro 98.1 4E-06 1.4E-10 74.1 7.4 72 41-124 48-133 (160)
42 3d36_A Sporulation kinase B; G 98.1 1.5E-05 5.2E-10 75.3 11.2 73 41-124 123-198 (244)
43 1ysr_A Sensor-type histidine k 98.1 1.6E-05 5.4E-10 69.9 10.3 57 41-97 46-104 (150)
44 3ehg_A Sensor kinase (YOCF pro 98.1 7.9E-06 2.7E-10 70.4 7.9 47 41-87 40-88 (128)
45 3a0y_A Sensor protein; ATP-LID 98.0 5.7E-06 2E-10 72.5 6.6 58 41-98 47-107 (152)
46 4ew8_A Sensor protein DIVL; si 98.0 1.8E-05 6.2E-10 76.2 10.7 71 42-124 156-229 (268)
47 1gkz_A [3-methyl-2-oxobutanoat 98.0 1.2E-05 4E-10 83.0 9.5 59 41-99 238-307 (388)
48 2q8g_A [pyruvate dehydrogenase 98.0 1E-05 3.5E-10 84.1 8.3 60 41-100 243-312 (407)
49 2e0a_A Pyruvate dehydrogenase 98.0 1.2E-05 4.1E-10 83.2 8.8 60 41-100 230-299 (394)
50 3sl2_A Sensor histidine kinase 97.9 2.5E-05 8.5E-10 70.8 9.0 78 41-124 43-125 (177)
51 1b3q_A Protein (chemotaxis pro 97.9 1.5E-05 5.2E-10 82.2 8.3 86 41-133 106-235 (379)
52 1y8o_A [pyruvate dehydrogenase 97.9 1.3E-05 4.3E-10 83.8 7.5 58 42-99 254-322 (419)
53 3a0r_A Sensor protein; four he 97.9 1.1E-05 3.6E-10 80.7 5.8 59 41-99 244-305 (349)
54 2btz_A Pyruvate dehydrogenase 97.9 2E-05 6.7E-10 81.5 7.4 59 41-99 231-299 (394)
55 3zxo_A Redox sensor histidine 97.9 8.1E-05 2.8E-09 63.5 10.1 45 41-86 43-89 (129)
56 3ehh_A Sensor kinase (YOCF pro 97.8 3.6E-05 1.2E-09 71.8 7.9 46 42-87 131-178 (218)
57 3zxq_A Hypoxia sensor histidin 97.4 0.00027 9.2E-09 59.8 6.9 45 41-86 39-85 (124)
58 4fpp_A Phosphotransferase; fou 97.1 0.002 6.8E-08 61.9 10.5 59 41-99 146-209 (247)
59 3ke6_A Protein RV1364C/MT1410; 94.8 0.055 1.9E-06 55.8 7.9 48 38-85 294-348 (399)
60 1ixm_A SPO0B, protein (sporula 93.7 0.055 1.9E-06 50.3 4.7 49 46-94 110-169 (192)
61 3hqc_A Tensin-like C1 domain-c 37.5 12 0.00041 33.3 1.5 52 43-104 36-87 (157)
62 2w0p_A Filamin-A; alternative 30.3 52 0.0018 25.9 4.2 30 53-82 28-57 (94)
63 3rgh_A Filamin-A; cell adhesio 29.5 38 0.0013 27.2 3.2 28 54-81 34-63 (100)
64 2ivw_A PILP pilot protein; lip 27.6 53 0.0018 27.5 3.8 29 468-496 24-55 (113)
65 2lc4_A PILP protein; type IV p 25.9 71 0.0024 26.6 4.3 30 468-497 28-60 (111)
66 2bp3_A Filamin A; structural p 24.9 60 0.002 25.7 3.6 30 53-82 31-60 (97)
67 2y4x_A PILP protein; biosynthe 24.7 72 0.0024 25.6 4.0 30 468-497 21-53 (93)
68 2ee6_A Filamin-B; beta-sandwic 23.2 53 0.0018 26.5 3.0 30 53-82 36-65 (105)
69 2eec_A Filamin-B; beta-sandwic 20.1 59 0.002 27.3 2.7 31 51-81 44-74 (125)
No 1
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2e-84 Score=664.46 Aligned_cols=344 Identities=53% Similarity=0.876 Sum_probs=285.3
Q ss_pred CCccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccC
Q 010846 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (499)
++++|++||++++++|+|||+|.+|.++|+|||+||+||+|+.|.|.++.+|...|+|.|||+||++++++.+|+||+||
T Consensus 5 m~~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~ts 84 (348)
T 3na3_A 5 VAGVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTS 84 (348)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCS
T ss_pred cccccccCCHHHHHhhcccCcccCHHHHHHHHHHHHHHcCCCEEEEEEEeCCEEEEEEEECCcCcChHHhhhhhcccccc
Confidence 46679999999999999999999999999999999999999999999998887789999999999999999999999999
Q ss_pred CcccccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhh
Q 010846 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARR 177 (499)
Q Consensus 98 K~~~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRr 177 (499)
|+.+++|+..+.++|||||||+||++||+|+|+||++++..+|++.|++|++....++++..+||+|+|+|||||+|+|+
T Consensus 85 K~~~~~dl~~i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~~~~~GTtV~v~~LF~n~P~R~ 164 (348)
T 3na3_A 85 KLQSFEDLASISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKAPPKPCAGNQGTQITVEDLFYNIATRR 164 (348)
T ss_dssp SCCCC---------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESSCCEEECCCSEEEEEEESTTTTCHHHH
T ss_pred ccCcchhhhccccCCcCChHHHHhhcccEEEEEEEECCCCceEEEEEeCCEEeeeeeEecCCCCcEEEECcccccCchhh
Confidence 99999999999999999999999999999999999999889999999999886555677889999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCCCCHHHHHHHHhChhhhccceEeeecccCCCCcce
Q 010846 178 KTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFV 257 (499)
Q Consensus 178 k~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~ 257 (499)
+++++.+.|+.+|.+++++||++||+|+|+|+++|+....+++.+..++.+++.++||..++++|++++.+.+ . .+
T Consensus 165 k~lk~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~-~---~~ 240 (348)
T 3na3_A 165 KALKNPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDK-T---LA 240 (348)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEEG-G---GT
T ss_pred hhccccHHHHHHHHHHHHHHHhhCCCeEEEEEECCEEEEEeecCCCCCHHHHHHHHhChHhHhhcEEEEeecC-C---cc
Confidence 9999888999999999999999999999999999887777888889999999999999999999999987654 2 35
Q ss_pred EEEEEEEeCCCCCCCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 010846 258 FKMDGYVSNSNYVAKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ 337 (499)
Q Consensus 258 ~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e 337 (499)
++++||++.|+++.++..|++|||||||.++.|.++|+++|+.++|+++|||+||+|+|||+.|||||||+|+||+|.+|
T Consensus 241 ~~i~G~is~p~~~~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l~~~~~P~~~L~l~~~p~~vDVNvhP~K~eV~f~~e 320 (348)
T 3na3_A 241 FKMNGYISNANYSVKKCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEVHFLHE 320 (348)
T ss_dssp EEEEEEEECSSCCBSSCEEEEEETTEECCCTTHHHHHHHHHHTTSCTTCBCEEEEEEECC--------------------
T ss_pred EEEEEEEeCCccCCCcccEEEEECCeEecCHHHHHHHHHHHHHhCcCCCceEEEEEEEeChhheeeeeCCCcCEEEEcCH
Confidence 99999999999887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccccccc
Q 010846 338 ELIVEKIQSAVELKLRQSNDSRTYKEQT 365 (499)
Q Consensus 338 ~~I~~~I~~~i~~~L~~~~~sr~f~~q~ 365 (499)
++|++.|+++|++.|...++||+|.+|+
T Consensus 321 ~~i~~~i~~~v~~~l~~~~~sr~f~~~~ 348 (348)
T 3na3_A 321 ESILERVQQHIESKLLGSNSSRMYFTQT 348 (348)
T ss_dssp --CTHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceeeccC
Confidence 9999999999999999999999999985
No 2
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-77 Score=618.08 Aligned_cols=334 Identities=29% Similarity=0.498 Sum_probs=286.7
Q ss_pred ccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 20 PKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
++|++||++++++|+|||||.+|.++|+|||+||+||||+.|.|.+..+|...|+|.|||+||++++++.+|++|+|||+
T Consensus 4 ~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~ 83 (367)
T 3h4l_A 4 TQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSKI 83 (367)
T ss_dssp ---------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC---
T ss_pred CcceeCCHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEECCCCcChhHhccceeccccCcC
Confidence 46999999999999999999999999999999999999999999998888778999999999999999999999999999
Q ss_pred ccccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEE-cCeeecccccccCCCceEEEEEeeechhhhhhh
Q 010846 100 SKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIARRK 178 (499)
Q Consensus 100 ~~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk 178 (499)
.+++|+..+.++|||||||+||++||+|+|+||+++ ..||++.|+ +|++.. ..+++..+||+|+|+|||||+|+|++
T Consensus 84 ~~~~Dl~~i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~-~~~~~~~~GTtV~v~~LF~n~P~R~k 161 (367)
T 3h4l_A 84 AKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITS-KTTTSRNKGTTVLVSQLFHNLPVRQK 161 (367)
T ss_dssp ------CCCCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEE-EEEECCSSEEEEEEESTTTTCHHHHH
T ss_pred CchhhhhhhhccCccchHHHHhhccCEEEEEEEECC-CCEEEEEEcCCCcEEe-eccccCCCCeEEEEchhhccCchhhh
Confidence 999999999999999999999999999999999988 789999997 787753 34678899999999999999999999
Q ss_pred -hccCCchhHHHHHHHHHHHHhhCCCeEEEEEEC---CceeeeeecCCCCCHHHHHHHHhChhhhccceEeeeccc----
Q 010846 179 -TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKH---GAARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEY---- 250 (499)
Q Consensus 179 -~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~---g~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~---- 250 (499)
++++.+.|+.+|.+++++||++||+|+|+|++. ++....+++.+..++.+++.++||..++++|++++...+
T Consensus 162 ~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~ 241 (367)
T 3h4l_A 162 EFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLDLNPF 241 (367)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEEECGGG
T ss_pred hhccchHHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCcceEEEECCCCCCHHHHHHHHhCHHHHhccEEEecccccccc
Confidence 678888899999999999999999999999974 456678899889999999999999999999999887100
Q ss_pred ---------CC----CCcceEEEEEEEeCCCCC---CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEE
Q 010846 251 ---------ND----SSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSI 314 (499)
Q Consensus 251 ---------~~----~~~~~~~v~G~is~~~~~---~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i 314 (499)
.+ .....++++||++.|.+. ..+..||+|||||||.++.|.++|+++|+.++ .++|||+||+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~-~~~~P~~~L~l 320 (367)
T 3h4l_A 242 KNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN-NVQFPAVFLNL 320 (367)
T ss_dssp CCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC-SSCBCCEEEEE
T ss_pred cccccccccccccccccCCcEEEEEEEeCCcccccCCCCCcEEEEECCCEecCHHHHHHHHHHHHhcC-CCCCcEEEEEE
Confidence 00 011459999999998753 34567999999999999999999999999986 47999999999
Q ss_pred EcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHHHhcCC
Q 010846 315 VLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLRQSN 356 (499)
Q Consensus 315 ~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L~~~~ 356 (499)
+|||+.|||||||+|+||+|.+|+.|++.|+++|.++|...+
T Consensus 321 ~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 321 ELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp ECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EcChHHcceeECCCCCEEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999997543
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=100.00 E-value=2.9e-72 Score=580.84 Aligned_cols=334 Identities=29% Similarity=0.473 Sum_probs=270.4
Q ss_pred CCccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccC
Q 010846 18 EPPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (499)
.+++|++||++++++|+||++|.+|.++|+|||+||+||+|+.|.|.+..+|...|+|.|||+||++++++.++++|+||
T Consensus 11 ~~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~ts 90 (365)
T 1h7s_A 11 PAKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTS 90 (365)
T ss_dssp ------------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC-----
T ss_pred cchhhccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCcEEEEEEECCCCcCHHHHHHHhhhcccc
Confidence 44579999999999999999999999999999999999999999999987766679999999999999999999999999
Q ss_pred CcccccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEE-cCeeecccccccCCCceEEEEEeeechhhhh
Q 010846 98 KLSKYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYR-DGVMESEPKACAAVKGTQIMVENLFYNMIAR 176 (499)
Q Consensus 98 K~~~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~-~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvR 176 (499)
|..+++|+..+.++||||+||+|++++|+|+|+||+.++..+|++.|+ +|++.. ..+++..+||+|+|+|||+|+|+|
T Consensus 91 K~~~~~dl~~i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~GT~V~v~~LF~n~P~R 169 (365)
T 1h7s_A 91 KIQEFADLTQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQ-KTPYPRPRGTTVSVQQLFSTLPVR 169 (365)
T ss_dssp -----CCTTCSEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEE-EEECCCCSEEEEEEESTTTTSHHH
T ss_pred ccccccchhcccccCCCCchhhhhhhhccEEEEEccCCCcceEEEEEcCCCceEe-ecccCCCCCcEEEEeecccccchh
Confidence 999888999999999999999999999999999999998889999997 687643 345677899999999999999999
Q ss_pred hh-hccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC---ceeeeeecCCCCCHHHHHHHHhChhhhccceEeeecccC-
Q 010846 177 RK-TLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG---AARADVHSIATSSRLDSIRTVYGVSVASNLVQLEASEYN- 251 (499)
Q Consensus 177 rk-~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g---~~~~~l~t~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~- 251 (499)
++ ++++...|+.+|.+++++||+++|+|+|+|.+++ +....+++++..++.+++.++||..++++|+++....+.
T Consensus 170 ~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~~~~ 249 (365)
T 1h7s_A 170 HKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLPPSD 249 (365)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCCCCH
T ss_pred hhhhccchHHHHHHHHHhhhhhhhcCCceEEEEEecCCCCcEEEEEEcCCCchHHHHHHHhcChHhHhceEEEeccCCcc
Confidence 99 6688888999999999999999999999999865 346778888888999999999999999999998543210
Q ss_pred -----------CCCcceEEEEEEEeCCCCC---CCCceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcC
Q 010846 252 -----------DSSSFVFKMDGYVSNSNYV---AKKTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLP 317 (499)
Q Consensus 252 -----------~~~~~~~~v~G~is~~~~~---~kk~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~ 317 (499)
+....+++++||++.|.+. ..+..|++|||||||.++.|.++|+++|+.++++ +||+++|+|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~~~-~~P~~~L~l~~~ 328 (365)
T 1h7s_A 250 SVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYNRH-QYPFVVLNISVD 328 (365)
T ss_dssp HHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTCTT-CBCCEEEEEECC
T ss_pred cccccccccccccccccEEEEEEEeCcccccccCCCcceEEEECCeEecCHHHHHHHHHHHHhhCcc-CCcEEEEEEEeC
Confidence 0011359999999999875 3456799999999999999999999999999987 999999999999
Q ss_pred CCceecccCCCCCeEecCChhHHHHHHHHHHHHHHh
Q 010846 318 PEHVDVNVHPTKREVSLLNQELIVEKIQSAVELKLR 353 (499)
Q Consensus 318 p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~L~ 353 (499)
|..|||||||+|+||+|.+|+.|++.|+++|.++|.
T Consensus 329 p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 329 SECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp GGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred hHHcceEECCCcCEEEEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998874
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=100.00 E-value=1.5e-70 Score=562.75 Aligned_cols=326 Identities=32% Similarity=0.505 Sum_probs=295.7
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
+|++||++++++|+|||+|.+|.++|+|||+||+||+|+.|.|.+..+|...|+|.|||+||+++|++.++.+|+|||+.
T Consensus 4 ~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~ 83 (333)
T 1b63_A 4 PIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSKIA 83 (333)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCC
T ss_pred cceECCHHHHHHHhcCCchhCHHHHHHHHHHHHHHCCCCeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhcccccCcc
Confidence 49999999999999999999999999999999999999999999998876789999999999999999999999999998
Q ss_pred cccccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeeecccccccCCCceEEEEEeeechhhhhhhhc
Q 010846 101 KYEDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVMESEPKACAAVKGTQIMVENLFYNMIARRKTL 180 (499)
Q Consensus 101 ~~~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~~~~~~GTtV~v~~LF~n~PvRrk~l 180 (499)
+++|+..+.++||||+||+|++++|+|+|+||+.++..+|++..+++.......+++..+||+|+|+|||+|+|+|++++
T Consensus 84 ~~~d~~~~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~GT~V~v~~Lf~n~P~r~kfl 163 (333)
T 1b63_A 84 SLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFL 163 (333)
T ss_dssp SHHHHHTCCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTEEEEEEECCCSEEEEEEESTTTTCHHHHHTC
T ss_pred ccchhhhccccCccccchhhhhcCCcEEEEEecCCCceEEEEEEcCCcceEeeecccCCCCCEEEEecccccchhhhhhh
Confidence 88899989999999999999999999999999998878999854444322234456778999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHhhCCCeEEEEEECCceeeeeec-CCCCCHHHHHHHHhChhhhccceEeeecccCCCCcceEE
Q 010846 181 QNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHS-IATSSRLDSIRTVYGVSVASNLVQLEASEYNDSSSFVFK 259 (499)
Q Consensus 181 k~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t-~~~~s~~~~i~~ifG~~~a~~l~~i~~~~~~~~~~~~~~ 259 (499)
++...|+.+|.+++++||+++|+++|+|+++|+....+.. ....++.+++..+||..++.++++++.+.. + ++
T Consensus 164 k~~~~e~~~i~~~~~~~al~~p~v~~~l~~ng~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~~-~-----~~ 237 (333)
T 1b63_A 164 RTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHG-D-----LT 237 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEETTEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEET-T-----EE
T ss_pred ccHHHHHHHHHHHHHHHhccCCCcEEEEEECCEEEEecCCCCCCchHHHHHHHHhChhhHhheEEEEecCC-C-----EE
Confidence 8888899999999999999999999999998865433321 124578899999999999999999987665 4 99
Q ss_pred EEEEEeCCCCCC-C-CceEEEEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCCh
Q 010846 260 MDGYVSNSNYVA-K-KTTMVLFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQ 337 (499)
Q Consensus 260 v~G~is~~~~~~-k-k~~~~lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e 337 (499)
++||++.|.+.. + +..|++|||||+|.++.|.++|+++|+.++|+++||+++|+|+|||+.|||||||+|+||+|.+|
T Consensus 238 v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~~~~~P~~~l~l~~~p~~vDvNvhP~K~ev~f~~~ 317 (333)
T 1b63_A 238 LRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQS 317 (333)
T ss_dssp EEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSSSCCCCCEEEEEECCGGGEECTTSTTCCCCEETTH
T ss_pred EEEEEEcCccccCCCCCcEEEEECCEEecCHHHHHHHHHHHHhhccCCCCcEEEEEEEeCchhccceECCCcCEEEeCCH
Confidence 999999998654 3 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHH
Q 010846 338 ELIVEKIQSAVELKL 352 (499)
Q Consensus 338 ~~I~~~I~~~i~~~L 352 (499)
+.|++.|+++|.++|
T Consensus 318 ~~v~~~i~~~i~~~l 332 (333)
T 1b63_A 318 RLVHDFIYQGVLSVL 332 (333)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999887
No 5
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=100.00 E-value=1.7e-31 Score=277.96 Aligned_cols=287 Identities=14% Similarity=0.124 Sum_probs=219.4
Q ss_pred CccccccChhHHHHhcCCccccCH--HHHHHHHHHchhhc---C-CCceEEEEeeCCeeEEEEEECCCCCCccc------
Q 010846 19 PPKIHRLEESVVNRIAAGEVIQRP--VSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED------ 86 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi~~~--~~~vkELieNSlDA---~-At~I~I~i~~~g~~~i~V~DNG~GI~~~d------ 86 (499)
...|+.|..--.-|.+.|++|.+. .++|+|||+||||| | |+.|.|.++.+| .|+|.|||+||+.++
T Consensus 7 ~~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~~~~~ 84 (390)
T 1s16_A 7 ADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGV 84 (390)
T ss_dssp GGGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTTCS
T ss_pred HHHcEEcchhHHHhhCCceeecCCcHHHHHHHHHHHHHHHHhcCCCCEEEEEEecCC--EEEEEECCCCcCcccccccCc
Confidence 447999999999999999999766 99999999999999 5 999999999887 599999999999999
Q ss_pred --HHhhhhh-cccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeeccccc--ccC--
Q 010846 87 --LPILCER-HTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA--CAA-- 158 (499)
Q Consensus 87 --l~~~~~r-~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~--~~~-- 158 (499)
++.++.+ |+|||+.+ |.+.. ++||||+||++++.+| .++|+|+..+ .+|++.|.+|.......+ ...
T Consensus 85 ~~~e~v~~~lhagsKf~~--~~~~~-sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~~~ 159 (390)
T 1s16_A 85 PAVELILCRLHAGGKFSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGKR 159 (390)
T ss_dssp BHHHHHHHCTTEESCSSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCTT
T ss_pred chhhheeeeecccCCcCC--Ccccc-cCCccccchHHHHHhhcccEEEEEECC--cEEEEEEeCCcccccceecccccCC
Confidence 6776655 99999864 55554 9999999999999999 6999999754 589999999976543322 222
Q ss_pred CCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCce-eeeeecCCCCCHHHHHHHHhChh
Q 010846 159 VKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGVS 237 (499)
Q Consensus 159 ~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~ifG~~ 237 (499)
.+||+|+++ |.|+++ ++...++..|.+.+++||+.+|+|+|.|.+.+.. ...|+..+ .+.+.+..++|..
T Consensus 160 ~~GT~V~f~------Pd~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~ 230 (390)
T 1s16_A 160 NTGTSVHFW------PDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--GLNDYLAEAVNGL 230 (390)
T ss_dssp CCEEEEEEE------ECGGGS-SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSS--CHHHHHHHHHTTS
T ss_pred CCceEEEEE------ECcccc-CcccccHHHHHHHHHHHHhcCCCcEEEEEeCCCceeEEEEcCC--cHHHHHHHHhCCC
Confidence 689999997 888877 6677789999999999999999999999987632 34566554 4899999999863
Q ss_pred --hhccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcC-----CCC
Q 010846 238 --VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATF-----PKA 305 (499)
Q Consensus 238 --~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~~y~~~l-----pk~ 305 (499)
+..+++.+..+.+ + +.++|++..|+- .-...++.|+|||++.. ..++.+|.+++..|. .|.
T Consensus 231 ~~~~~~~i~~~~~~~-~-----~~ve~a~~~~~~-~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~~~k~ 303 (390)
T 1s16_A 231 PTLPEKPFIGNFAGD-T-----EAVDWALLWLPE-GGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNILPR 303 (390)
T ss_dssp CCEEEEEEEEEEECS-S-----EEEEEEEEECTT-CCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCSCT
T ss_pred cccCCCcEEEEEeeC-C-----EEEEEEEEeccC-CCCceEEEEECCEecCCCCCHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 3445666655443 3 889999987522 22356899999999986 234444444444332 121
Q ss_pred ----------CCcEEEEEEEcCCCceecccCCCCCe
Q 010846 306 ----------SKPFIYMSIVLPPEHVDVNVHPTKRE 331 (499)
Q Consensus 306 ----------~~P~~~L~i~i~p~~vDVNVhPtK~e 331 (499)
..=+++|++.+|.-..+ -.||..
T Consensus 304 ~~~l~~~dvregl~avisvki~~P~Fe---gQTK~k 336 (390)
T 1s16_A 304 GVKLSAEDIWDRCAYVLSVKMQDPQFA---GQTKER 336 (390)
T ss_dssp TCCCCHHHHHTTEEEEEEEEESSCCBS---STTCCC
T ss_pred CCccCHHHHhhccEEEEEeecCCCCcc---ccccch
Confidence 12267899998844443 356654
No 6
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=99.98 E-value=1.5e-30 Score=268.76 Aligned_cols=294 Identities=13% Similarity=0.076 Sum_probs=224.9
Q ss_pred HHHhcCCcccc-----CHHHHHHHHHHchhhc----CCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 30 VNRIAAGEVIQ-----RPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 30 ~~~i~ag~vi~-----~~~~~vkELieNSlDA----~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
.-|.+.|++|. .|.++|+|||+||||| +|+.|.|.|..+| .|+|+|||+||+. |+ ++.+|+|||+.
T Consensus 14 ~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g--~I~V~DnGrGIp~-e~--v~~lhagsKf~ 88 (369)
T 3cwv_A 14 NVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG--SIALFCTSRTVTA-EN--LVRVATGAGFL 88 (369)
T ss_dssp HHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEEEESSCCH-HH--HHHHHTTTTGG
T ss_pred HHHhCCceEEcCCCCchHHHHHHHHHhhhHhHHhhCCCCEEEEEEeCCC--EEEEEECCCCcCH-hH--eeeeecCCCcC
Confidence 35677888884 6899999999999998 8999999999888 5999999999999 44 44999999997
Q ss_pred cccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee------eccccc--ccCCCceEEEEEeeec
Q 010846 101 KYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM------ESEPKA--CAAVKGTQIMVENLFY 171 (499)
Q Consensus 101 ~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~------~~~~~~--~~~~~GTtV~v~~LF~ 171 (499)
+.+ ...+|+++| +|++++.+| +++|+|+..+. +|++.|.+|.. .....+ .....||+|+++
T Consensus 89 ~~~---~~~~y~vsG-Gls~vnalSs~l~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~---- 158 (369)
T 3cwv_A 89 GRP---PGDGWGWDS-MLVVSLALSSRYQVDIWADGR--QWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV---- 158 (369)
T ss_dssp GSS---CCCSTTTTS-SHHHHHHTEEEEEEEEEETTE--EEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE----
T ss_pred CCc---ccccccccC-HHHHHHHhhceEEEEEEECCC--EEEEEEeCCcccccccccCCceEecccCCCCCEEEEE----
Confidence 643 014677777 899999996 79999997643 89999999976 432232 235799999997
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCc-eeeeeecCCCCCHHHHHHHHhChh--hhccceEeeec
Q 010846 172 NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA-ARADVHSIATSSRLDSIRTVYGVS--VASNLVQLEAS 248 (499)
Q Consensus 172 n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~-~~~~l~t~~~~s~~~~i~~ifG~~--~a~~l~~i~~~ 248 (499)
|.|+++ ++...++..|.+.+++||+.+|+|+|+|.+.+. ....+...+ .+.+.+..++|.. +..+++.++..
T Consensus 159 --Pd~~~F-~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~~~~ 233 (369)
T 3cwv_A 159 --PDATIF-EVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG--GVAQWAHVLTEARPQLHPEPVVFDFT 233 (369)
T ss_dssp --ECTTTC-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT--HHHHHHHHHHTTSCBSSSSCEEEEEE
T ss_pred --ECHHHh-CCccccHHHHHHHHHHHcCcCCCcEEEEEeCCCCeeEEEEeCc--hHHHHHHHHhcCCcccCCCcEEEEEe
Confidence 999887 777789999999999999999999999999762 234566655 3899999999975 55567777665
Q ss_pred ccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcCCCC----------CCcEEEEE
Q 010846 249 EYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATFPKA----------SKPFIYMS 313 (499)
Q Consensus 249 ~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~~y~~~lpk~----------~~P~~~L~ 313 (499)
.+ + +.++|+++.+. ..+..++.|+|||++.. ..++.||.++|..|+.+. ..-+++|+
T Consensus 234 ~~-~-----i~ve~a~~~~~--~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k~~~~~l~~~dvregl~avis 305 (369)
T 3cwv_A 234 WD-G-----LRVQCALQWCE--DEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARVAQGLTAIVA 305 (369)
T ss_dssp ET-T-----EEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTEEEEEE
T ss_pred cC-C-----EEEEEEEEecC--CCCeeEEEEECCEEeCCCCCHHHHHHHHHHHHHHHHHhhcCCCcCHHHHhhccEEEEE
Confidence 44 4 88999998653 22456889999999998 889999999999988321 12267899
Q ss_pred EEcCCCc--eecccCCCCCeEecCChhHH-HHHHHHHHHHHHhc
Q 010846 314 IVLPPEH--VDVNVHPTKREVSLLNQELI-VEKIQSAVELKLRQ 354 (499)
Q Consensus 314 i~i~p~~--vDVNVhPtK~eV~F~~e~~I-~~~I~~~i~~~L~~ 354 (499)
+.+|.-. .+ -.||...-=..-..+ -+.+.+.|..+|..
T Consensus 306 vk~~~P~~~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~ 346 (369)
T 3cwv_A 306 VSGPRRQMAFA---GPTKELLAIPGLEEAIRKQLQPLFIELLRE 346 (369)
T ss_dssp EECCGGGCCBS---STTCCSBCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred eccCCcchhcc---ccccchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9987333 22 367765443333333 35666677776654
No 7
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=99.97 E-value=7.2e-31 Score=273.15 Aligned_cols=286 Identities=16% Similarity=0.199 Sum_probs=218.1
Q ss_pred CccccccChhHHHHhcCCcccc------CHHHHHHHHHHchhhc---C-CCceEEEEeeCCeeEEEEEECCCCCCccc--
Q 010846 19 PPKIHRLEESVVNRIAAGEVIQ------RPVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED-- 86 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi~------~~~~~vkELieNSlDA---~-At~I~I~i~~~g~~~i~V~DNG~GI~~~d-- 86 (499)
...|+.|..--.-|.+.|++|. .|.++|+|||+||||| | |+.|.|.|+.+| .|+|.|||+||+.++
T Consensus 6 ~~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g--~I~V~DnG~GIp~~~~~ 83 (391)
T 1ei1_A 6 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHP 83 (391)
T ss_dssp GGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS--CEEEEECSSCCCCSBCT
T ss_pred HHHCEECchhHHHHcCCCeEECCCCCCcCHHHHHHHHHHhHHHHHhcCCCCEEEEEEeCCC--EEEEEECCCCcccCccc
Confidence 3479999999999999999995 7899999999999999 6 999999999887 599999999999998
Q ss_pred ------HHhhh-hhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecccc--cc
Q 010846 87 ------LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--AC 156 (499)
Q Consensus 87 ------l~~~~-~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~--~~ 156 (499)
++.++ .+|+|||+.+ |.+.. |+||||+||++++.+| .++|+|+..+ .+|++.|.+|....... ..
T Consensus 84 ~~~~~~~elv~~~lhagsKf~~--~~~~v-SgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~~ 158 (391)
T 1ei1_A 84 EEGVSAAEVIMTVLHAGGKFDD--NSYKV-SGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGE 158 (391)
T ss_dssp TTSSBHHHHHHHSTTEESCSSS--SSCSS-CSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEEE
T ss_pred ccCcchHHHhheeccccCCcCC--Ccccc-cCCccccchHHHHHhcCeEEEEEEeCC--cEEEEEEcCCcccccceeccC
Confidence 44444 5899999864 45554 9999999999999999 6999999754 58999999998643221 22
Q ss_pred cCCCceEEEEEeeechhhhhhhhccC-CchhHHHHHHHHHHHHhhCCCeEEEEEECCce-eeeeecCCCCCHHHHHHHHh
Q 010846 157 AAVKGTQIMVENLFYNMIARRKTLQN-SSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVY 234 (499)
Q Consensus 157 ~~~~GTtV~v~~LF~n~PvRrk~lk~-~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~if 234 (499)
...+||+|+++ |.|+++ ++ ...++..|.+.++.+|+.+|+|+|.|.+.... ...++..+ .+.+.+..++
T Consensus 159 ~~~~GT~V~f~------Pd~~~F-~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~ 229 (391)
T 1ei1_A 159 TEKTGTMVRFW------PSLETF-TNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG--GIKAFVEYLN 229 (391)
T ss_dssp CSCCEEEEEEE------ECTTTC-CSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS--HHHHHHHHHH
T ss_pred cCCCccEEEEE------EChhhh-CCccccCHHHHHHHHHHhcccCCCcEEEEEcCCCcceEEEEcCc--hHHHHHHHHc
Confidence 35799999997 999877 66 67789999999999999999999999987632 33455554 3888999998
Q ss_pred Chh--hhccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCCh-----HHHHHHHHHHHhcC-----
Q 010846 235 GVS--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVECA-----PLKRAVEIVYAATF----- 302 (499)
Q Consensus 235 G~~--~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~~-----~L~kaI~~~y~~~l----- 302 (499)
+.. +..+++.+....+ + +.+++++..+. .....++.|+|||++..- .++.+|.++...|.
T Consensus 230 ~~~~~~~~~~i~~~~~~~-~-----i~veva~~~~~--~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~~l 301 (391)
T 1ei1_A 230 KNKTPIHPNIFYFSTEKD-G-----IGVEVALQWND--GFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGY 301 (391)
T ss_dssp HTSCBSSSCCEEEEEEET-T-----EEEEEEEEEBS--SCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CCCcccccccEEEEEecC-C-----EEEEEEEEccC--CCCeeEEEEEcceecCCCCcHHHHHHHHHHHHHHHHHHHhCc
Confidence 765 4445666655443 4 88999987643 223468899999999862 34444443333332
Q ss_pred -CC----------CCCcEEEEEEEcCCCceecccCCCCCe
Q 010846 303 -PK----------ASKPFIYMSIVLPPEHVDVNVHPTKRE 331 (499)
Q Consensus 303 -pk----------~~~P~~~L~i~i~p~~vDVNVhPtK~e 331 (499)
.+ ...=+++|++.+|.-..+ -.||..
T Consensus 302 ~k~~~~~~~~~dvregl~avisvki~~P~Fe---gQTK~k 338 (391)
T 1ei1_A 302 SKKAKVSATGDDAREGLIAVVSVKVPDPKFS---SQTKDK 338 (391)
T ss_dssp HHHHCCCCCHHHHTTTEEEEEEEECSSCCBS---STTCCS
T ss_pred ccccCCccCHHHHhhccEEEEEEecCCCCcC---Cccccc
Confidence 11 123478899998844333 255654
No 8
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=99.97 E-value=1.2e-31 Score=255.32 Aligned_cols=167 Identities=20% Similarity=0.357 Sum_probs=125.0
Q ss_pred HhcCCccccC--HHHHHHHHHHchhhc---C-CCceEEEEeeCCeeEEEEEECCCCCCccc--------HHh-hhhhccc
Q 010846 32 RIAAGEVIQR--PVSAVKELVENSLDA---D-ATSINVVVKDGGLKLIQVSDDGHGIRYED--------LPI-LCERHTT 96 (499)
Q Consensus 32 ~i~ag~vi~~--~~~~vkELieNSlDA---~-At~I~I~i~~~g~~~i~V~DNG~GI~~~d--------l~~-~~~r~~T 96 (499)
|.+.|++|.+ |.++|+|||+||||| | |+.|.|.++.+| .|+|.|||+||+.++ ++. ++.+|+|
T Consensus 6 r~rpgmyig~~~~~~~v~Elv~NsiDa~~~g~a~~I~V~i~~~g--~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hat 83 (201)
T 3fv5_A 6 RRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ--SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAG 83 (201)
T ss_dssp HHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC---
T ss_pred ccCCccEECCCChhhhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--EEEEEECCCCcCcccccccCcchhheeeeeeccc
Confidence 4567888865 599999999999999 5 999999998877 599999999999998 455 5899999
Q ss_pred CCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecccc---ccc-CCCceEEEEEeeec
Q 010846 97 SKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA-AVKGTQIMVENLFY 171 (499)
Q Consensus 97 SK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~GTtV~v~~LF~ 171 (499)
||+.+ |++.. ++|||||||+|++++| +++|+|+..+. +|++.|.+|....... +++ ...||+|+|.
T Consensus 84 sK~~~--~~~~~-s~GfrGeglssinalS~~l~v~t~~~g~--~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~---- 154 (201)
T 3fv5_A 84 GKFSN--KNYQF-SGGLHGVGISVVNALSKRVEVNVRRDGQ--VYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW---- 154 (201)
T ss_dssp ---------------------CHHHHHTEEEEEEEEEETTE--EEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE----
T ss_pred cCcCC--Ccccc-cCcccceecchhhcccceEEEEEEecCc--eEEEEEeCCEEcccceecccCCCCCCCeEEEEE----
Confidence 99875 66665 8999999999999999 79999998653 6999999998753322 221 6799999994
Q ss_pred hhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC
Q 010846 172 NMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 172 n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
|.|+++ ++...++..|.+++++||++||+|+|+|.+..
T Consensus 155 --Pdr~~F-~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~~r 192 (201)
T 3fv5_A 155 --PDETFF-DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEI 192 (201)
T ss_dssp --ECGGGS-SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETT
T ss_pred --ECHHHc-CCCccCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 999776 88888999999999999999999999999864
No 9
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=99.95 E-value=1.8e-27 Score=256.56 Aligned_cols=291 Identities=16% Similarity=0.183 Sum_probs=205.1
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcC----------------CC--ceEEEEeeCCeeEEEEEECCCCCC
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~----------------At--~I~I~i~~~g~~~i~V~DNG~GI~ 83 (499)
|++|-+-+++.+- .+|..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||+
T Consensus 13 i~~Ll~ll~~~lY-----sn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt 86 (559)
T 1y4s_A 13 VKQLLHLMIHSLY-----SNKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGMT 86 (559)
T ss_dssp HHHHHHHHHHHTG-----GGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETTT-TEEEEEECSSCCC
T ss_pred HHHHHHHHHHhcC-----CChHHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCCC-cEEEEEECCCCCC
Confidence 5666666665544 678999999999999998 54 6777777666 5799999999999
Q ss_pred cccHHhhhhhcccCCcccc-cc-----cccccccCccchHHHhhhhhc-eEEEEEEEcC--CccEEEEEEEcCeeecccc
Q 010846 84 YEDLPILCERHTTSKLSKY-ED-----LQSIKSMGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEPK 154 (499)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~-~d-----l~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~--~~~~~~~~~~~g~~~~~~~ 154 (499)
++|+...+.++++|+...| +. ...+.+.||+|+|++|+..+| +|+|.||+.+ ...+|++...+|... ...
T Consensus 87 ~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i~ 165 (559)
T 1y4s_A 87 RDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TVA 165 (559)
T ss_dssp HHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEE-EEE
T ss_pred HHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCee-EEe
Confidence 9999999999999986554 11 235679999999999999887 6999999987 367888887655431 112
Q ss_pred cc-cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHH--hhCCCeEEEE------------EECCceeeeee
Q 010846 155 AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTNVSFSC------------RKHGAARADVH 219 (499)
Q Consensus 155 ~~-~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yA--l~~p~v~f~l------------~~~g~~~~~l~ 219 (499)
++ ...+||+|++. |- +.+..++ +..+|.++|++|| +.+| |.|.. ...++.++.|.
T Consensus 166 ~~~~~~~GT~I~L~-Lk---~d~~Efl-----e~~~I~~iv~kys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw~ 235 (559)
T 1y4s_A 166 DITKEDRGTEITLH-LR---EGEDEFL-----DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALWT 235 (559)
T ss_dssp EECCCSCEEEEEEE-EC---TTCGGGS-----CHHHHHHHHHHHHTTCSSC-EEEEEEECSTTSCEEEEEECCCCCCGGG
T ss_pred ECCCCCCCeEEEEE-Ec---chhhhcc-----hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCcccee
Confidence 22 45799999997 20 1222222 3688999999999 8889 88832 12223345666
Q ss_pred cCCCCCHHHHHHHHhC---hhhhccceEeeecccCCCCcceEEEEEEEeCCCC------C-CCCceEEEEEcCcccCChH
Q 010846 220 SIATSSRLDSIRTVYG---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY------V-AKKTTMVLFVNDRLVECAP 289 (499)
Q Consensus 220 t~~~~s~~~~i~~ifG---~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~------~-~kk~~~~lFIN~R~V~~~~ 289 (499)
.++..-..+.+...|+ ......|..++...+ ..+.+.|++..|.. . .++..+.||||+|+|....
T Consensus 236 ~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~e-----g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~~ 310 (559)
T 1y4s_A 236 RNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVE-----GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDA 310 (559)
T ss_dssp SCGGGCCHHHHHHHHHHHHTCSSCEEEEEEECCC-----SSSCEEEEEEEESSCCTTCSSSSCCCCEEEEETTEEEEEEE
T ss_pred cCcccccHHHHHHHHHhhhhhhhcCeEEEEeccC-----CceEEEEEEEcCCcCcchhhhhcccCCeEEEEcCEEeecch
Confidence 5554333446777776 244556777776554 23789999887652 2 2455688999999998763
Q ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHHH
Q 010846 290 LKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVELK 351 (499)
Q Consensus 290 L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~~ 351 (499)
..++|. -+.++...++|..+|+||. || .+.++.++..|++.|.+.
T Consensus 311 ---------~~llP~---~l~fv~gvVDs~dlplNVS---RE--~lq~~~~l~~I~~~l~kk 355 (559)
T 1y4s_A 311 ---------EQFMPN---YLRFVRGLIDSSDLPLNVS---RE--ILQDSTVTRNLRNALTKR 355 (559)
T ss_dssp ---------GGGSCG---GGTTCEEEEEESSSCTTCC---TT--GGGGCHHHHHHHHHHHHH
T ss_pred ---------hhhChH---hHhheeEeeChhhCCCeeC---ch--hhhhhHHHHHHHHHHHHH
Confidence 667775 1124455699999999995 44 466677777777776553
No 10
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=99.95 E-value=1.5e-26 Score=241.02 Aligned_cols=276 Identities=15% Similarity=0.179 Sum_probs=209.6
Q ss_pred ccccccChhHHHHhcCCccc-----cCHHHHHHHHHHchhhcC----CCceEEEEeeCCeeEEEEEECCCCCCcccHHh-
Q 010846 20 PKIHRLEESVVNRIAAGEVI-----QRPVSAVKELVENSLDAD----ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPI- 89 (499)
Q Consensus 20 ~~I~~L~~~v~~~i~ag~vi-----~~~~~~vkELieNSlDA~----At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~- 89 (499)
..|+.|...-.-+.+.|++| ..+..+|+|||+||||+. ++.|.|.+..+| .|+|.|||+||+.++++.
T Consensus 6 ~~i~~l~~le~vr~rpgmyiGs~~~~g~~~~v~Elv~N~iD~a~~~~~~~I~V~i~~~~--~i~V~DnG~GIp~~~~~~~ 83 (390)
T 1kij_A 6 SAIRVLKGLEGVRHRPAMYIGGTGVEGYHHLFKEILDNAVDEALAGYATEILVRLNEDG--SLTVEDNGRGIPVDLMPEE 83 (390)
T ss_dssp -CCEECCTTHHHHHCTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSEETTT
T ss_pred HHCEEcchhHHHhcCCCcEEccCCcchHHHHHHHHHHHHHHHhhhCCCCEEEEEEEcCC--EEEEEEcCCCCCHHHhhhc
Confidence 46999999999999999999 567889999999999996 999999998776 599999999999999865
Q ss_pred -------hh-hhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeeccccc---cc
Q 010846 90 -------LC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPKA---CA 157 (499)
Q Consensus 90 -------~~-~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~~---~~ 157 (499)
++ ..|++||+.. +.+. .+.|++|+||+++..+| .++|+|+..+ .+|++.|.+|.......+ +.
T Consensus 84 ~~~~~e~if~~~~~~~kf~~--~~~~-~s~G~~G~Gls~v~als~~~~v~t~~~g--~~~~~~~~~G~~~~~~~~~~~~~ 158 (390)
T 1kij_A 84 GKPAVEVIYNTLHSGGKFEQ--GAYK-VSGGLHGVGASVVNALSEWTVVEVFREG--KHHRIAFSRGEVTEPLRVVGEAP 158 (390)
T ss_dssp TEEHHHHHHHSSCEESGGGG--SSCC-CCSCSSTTSHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECG
T ss_pred cccchhhheeeeeecccccC--cccc-ccCCCCCcceeeecccccceEEEEecCC--cEEEEEEcCCcccccceeecccc
Confidence 55 4588888742 2222 47899999999999999 5999999654 479999999976432222 22
Q ss_pred -CCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCce-eeeeecCCCCCHHHHHHHHhC
Q 010846 158 -AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYG 235 (499)
Q Consensus 158 -~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~ifG 235 (499)
..+||+|+++ |.|.++ ++...++..|.+.++.||+.+|+++|.|.+.+.. ...++.++ .+.+.+..++|
T Consensus 159 ~~~~GT~V~f~------Pd~~~F-~~~~~~~~~l~~rl~~~A~lnpgv~i~l~d~~~~~~~~f~~~~--Gl~~~v~~l~~ 229 (390)
T 1kij_A 159 RGKTGTRVTFK------PDPEIF-GNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKG--GVASFAKALAE 229 (390)
T ss_dssp GGCCEEEEEEE------ECHHHH-TTCCCCHHHHHHHHHHHHHHTTTCEEEEEEGGGTEEEEECCTT--HHHHHHHHHTT
T ss_pred CCCCCcEEEEE------EChHHh-CCccccHHHHHHHHHHhcCcCCCcEEEEEeCCCcceEEEEcCC--cHHHHHHHHhC
Confidence 5799999997 888776 6666788999999999999999999999987532 24566554 38899999998
Q ss_pred hh--hhccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCC-----hHHHHHHHHHHHhcC------
Q 010846 236 VS--VASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC-----APLKRAVEIVYAATF------ 302 (499)
Q Consensus 236 ~~--~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~-----~~L~kaI~~~y~~~l------ 302 (499)
.. +..+++.+....+ + +.++++++-.. .....++.|+|+|++.. ..++.++.+++..|.
T Consensus 230 ~~~~~~~~~i~~~~~~~-~-----i~ve~a~~~~~--~~~~~~~sFvN~i~t~~GGTH~~g~~~alt~~i~~~~~~~~l~ 301 (390)
T 1kij_A 230 GEDLLYEKPFLIRGTHG-E-----VEVEVGFLHTQ--GYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLN 301 (390)
T ss_dssp TSCBSCSSCEEEEEEET-T-----EEEEEEEEEBS--SSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcCCCCcEEEEeecC-C-----eEEEEEEEecC--CCCceEEEEEcCeeeCCCCchhHHHHHHHHHHHHHHHHHhCcc
Confidence 75 4456677765443 3 88898887532 22457899999999987 345555555544442
Q ss_pred CCC----------CCcEEEEEEEcCCC
Q 010846 303 PKA----------SKPFIYMSIVLPPE 319 (499)
Q Consensus 303 pk~----------~~P~~~L~i~i~p~ 319 (499)
++. ..=.+++++.+|--
T Consensus 302 k~~~~~l~~~dvregl~avisvki~~P 328 (390)
T 1kij_A 302 KEKGPQPTGDDLLEGLYAVVSVKLPNP 328 (390)
T ss_dssp CSSSCCCCTTTTTTTEEEEEEEECSSC
T ss_pred ccccCCcCHHHHhhhcEEEEEeecCCC
Confidence 221 12357788887743
No 11
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=99.95 E-value=1.2e-27 Score=260.76 Aligned_cols=291 Identities=16% Similarity=0.179 Sum_probs=199.8
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcC----------------CC--ceEEEEeeCCeeEEEEEECCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~----------------At--~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
.|++|-+-+++.+-+ ++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||
T Consensus 12 ei~~Ll~ll~~~lYs-----n~~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 85 (624)
T 2ioq_A 12 EVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDK-RTLTISDNGVGM 85 (624)
T ss_dssp ---CCHHHHHHHHSS-----CTTHHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred cHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeCCC-cEEEEEECCCCC
Confidence 366777777766554 77899999999999998 64 5777776665 579999999999
Q ss_pred CcccHHhhhhhcccCCcccc----c--ccccccccCccchHHHhhhhhc-eEEEEEEEcC--CccEEEEEEEcCeeeccc
Q 010846 83 RYEDLPILCERHTTSKLSKY----E--DLQSIKSMGFRGEALASMTYVG-HVTVTTITKG--HLHGYRVSYRDGVMESEP 153 (499)
Q Consensus 83 ~~~dl~~~~~r~~TSK~~~~----~--dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~--~~~~~~~~~~~g~~~~~~ 153 (499)
+++|+...+.++++|+...| . +...+.+.||+|+|++|+..|| +|+|.||+.+ ...+|++...+|... ..
T Consensus 86 t~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~-~i 164 (624)
T 2ioq_A 86 TRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEY-TV 164 (624)
T ss_dssp CHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSCC-EE
T ss_pred CHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCeE-EE
Confidence 99999998889999986544 1 1345678999999999999999 7999999987 567888887654321 11
Q ss_pred ccc-cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHH--hhCCCeEEEE------------EECCceeeee
Q 010846 154 KAC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTNVSFSC------------RKHGAARADV 218 (499)
Q Consensus 154 ~~~-~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yA--l~~p~v~f~l------------~~~g~~~~~l 218 (499)
.++ ...+||+|++. |- +.+..++ +..+|.+++++|| +.+| |.|.. ...++.+..|
T Consensus 165 ~~~~~~~~GT~I~L~-Lk---~d~~Efl-----~~~~i~~ivkkys~fi~~P-I~~~~~e~~~~~~~~~~~~in~~~~lw 234 (624)
T 2ioq_A 165 ADITKEDRGTEITLH-LR---EGEDEFL-----DDWRVRSIISKYSDHIALP-VEIEKREEKDGETVISWEKINKAQALW 234 (624)
T ss_dssp EEECCSSSEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHHTTCSSC-EEEEEEEECSSCEEEEEEECCCCSCTT
T ss_pred EECCCCCCCeEEEEE-Ec---chhhhcc-----hHHHHHHHHHHHhccCCCc-eEEeeccccccccccceEEEeCCccce
Confidence 222 45799999997 21 1122222 2688999999999 8889 88821 1122334556
Q ss_pred ecCCCCCHHHHHHHHhCh---hhhccceEeeecccCCCCcceEEEEEEEeCCCC------C-CCCceEEEEEcCcccCCh
Q 010846 219 HSIATSSRLDSIRTVYGV---SVASNLVQLEASEYNDSSSFVFKMDGYVSNSNY------V-AKKTTMVLFVNDRLVECA 288 (499)
Q Consensus 219 ~t~~~~s~~~~i~~ifG~---~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~------~-~kk~~~~lFIN~R~V~~~ 288 (499)
..++..-..+.+...|+. .....|..++...+ ..+.+.|++..|.. . .++..+.||||+|+|...
T Consensus 235 ~~~~~~i~~e~y~~fy~~~~~d~~~~l~~ih~~~e-----g~~~~~gll~~P~~~p~~~~~r~~~~~i~lyvn~v~I~d~ 309 (624)
T 2ioq_A 235 TRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVE-----GKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDD 309 (624)
T ss_dssp TSCTTTCCHHHHHHHHHHHHTCCSCCSCCEEEEEE-----SSSCEEEEEECCSSCCGGGSSSSCCCCEEEEESSCEEEEE
T ss_pred EecCccchHHHHHHHHHhhccchhcCeEEEEeccc-----ceEEEEEEEEeCCcCccchhhhcccCCeEEEECCEEeecc
Confidence 655543334466666665 44556766666543 23789999988762 2 245668899999999876
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHH
Q 010846 289 PLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 350 (499)
Q Consensus 289 ~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~ 350 (499)
. ..++|.. +.++...++|..+|+||. ||. +.++.++..|++.|.+
T Consensus 310 ~---------~~llP~~---l~fv~gvVDs~dl~lNVS---RE~--LQ~~~~l~~I~~~l~k 354 (624)
T 2ioq_A 310 A---------EQFMPNY---LRFVRGLIDSSDLPLNVS---REI--LQDSTVTRNLRNALTK 354 (624)
T ss_dssp E---------CSSSCTT---STTCEEEEEESSSCTTCC---HHH--HHHSSHHHHHHHHHHH
T ss_pred h---------hccchhh---hhhEEEEECHhhCCCccC---chh--hhhhHHHHHHHHHHHH
Confidence 5 6677761 224555699999999994 443 4555666666666544
No 12
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=99.93 E-value=2.5e-25 Score=214.16 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=139.6
Q ss_pred CccccccChhHHHHhcCCccc------cCHHHHHHHHHHchhhc----CCCceEEEEeeCCeeEEEEEECCCCCCcccH-
Q 010846 19 PPKIHRLEESVVNRIAAGEVI------QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDL- 87 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi------~~~~~~vkELieNSlDA----~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl- 87 (499)
...|+.|..--.-|.+.|.+| ..|..+|+|||+||+|+ +|+.|.|.|+.+| .|+|.|||+||+.++.
T Consensus 7 ~~~i~~l~~le~vr~rPgmYiG~~~~~~gl~~lv~ElvdNsiDea~~g~~~~I~V~i~~~g--~i~V~DnGrGIp~~~~~ 84 (220)
T 4duh_A 7 SSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN--SVSVQDDGRGIPTGIHP 84 (220)
T ss_dssp --------CHHHHHHSTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHHSCCCEEEEEECTTS--CEEEEECSSCCCCSEET
T ss_pred hhHcEEechhHHHHhCCceEECCCCCcccHHHHHHHHHHHHHHHHhcCCCCEEEEEEeCCC--cEEEEECCcCccccccc
Confidence 346999999888899999998 35799999999999999 8999999999877 5999999999999975
Q ss_pred -------Hh-hhhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecccc--cc
Q 010846 88 -------PI-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--AC 156 (499)
Q Consensus 88 -------~~-~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~--~~ 156 (499)
+. ++.+|++||+.+ .....+.||||+|+++++.+| +++|+++..+ ..|++.|.+|....... +.
T Consensus 85 ~~~~~~~e~i~t~lhag~Kfd~---~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g--~~~~~~f~~G~~~~~l~~~g~ 159 (220)
T 4duh_A 85 EEGVSAAEVIMTVLHAGGKFDD---NSYKVSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTGE 159 (220)
T ss_dssp TTTEEHHHHHHHSTTCSSCCCT---TC--------CCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSSCEEEEE
T ss_pred ccCcchhhheeeecccCCCcCC---CccccccCccceecchhcccccceEEEEEECC--EEEEEEecCCcCcCCceeccc
Confidence 34 358999999863 334489999999999999999 7999998765 36999999998754322 34
Q ss_pred cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC
Q 010846 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 157 ~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
+...||+|++. |.+.++.+....++..|.+.++.+|+.+|+|+|.|.+..
T Consensus 160 ~~~~GT~V~F~------Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 209 (220)
T 4duh_A 160 TEKTGTMVRFW------PSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKR 209 (220)
T ss_dssp CSCCEEEEEEE------ECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEETT
T ss_pred cCCCCcEEEEE------ECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 57899999985 888877655467889999999999999999999998753
No 13
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=99.92 E-value=2.9e-25 Score=242.91 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=181.0
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcC----------------CC--ceEEEEeeCCeeEEEEEECCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------AT--SINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~----------------At--~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
.|++|-+-+++.+ ..++..+|+|||+||+||+ |+ .|.|.++.++ ..|+|.|||+||
T Consensus 30 ei~~Ll~li~~sL-----Ysn~eifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d~~~-~~I~I~DnGiGM 103 (666)
T 2o1u_A 30 EVNRMMKLIINSL-----YKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 103 (666)
T ss_dssp ----CCSSSTTTT-----SSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhc-----cCCchHHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEeCCC-CEEEEEECCCCC
Confidence 3666666666544 4467889999999999998 64 5666666555 579999999999
Q ss_pred CcccHHhhhhhcccC-------Ccccc-----cccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeee
Q 010846 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVME 150 (499)
Q Consensus 83 ~~~dl~~~~~r~~TS-------K~~~~-----~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~ 150 (499)
+++|+...+.++++| |+... .|+..+..||+++.++++++ .+|+|+||+.++ .+|++...+|...
T Consensus 104 t~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vA--dkV~V~Sr~~~~-~~~~W~s~gg~~t 180 (666)
T 2o1u_A 104 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS 180 (666)
T ss_dssp CHHHHHHHTTC-------------------------------CTTGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCCE
T ss_pred CHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhc--CEEEEEEeeCCC-ceEEEEEeCCeEE
Confidence 999999999899998 55542 35555666666555443333 479999999875 4788877666553
Q ss_pred ccccc--ccCCCceEEEEEeeechhhhhhhhccCCchh---HHHHHHHHHHHH--hhCCCeEEEE-------------EE
Q 010846 151 SEPKA--CAAVKGTQIMVENLFYNMIARRKTLQNSSDD---YTKIVDLLSRMA--IHHTNVSFSC-------------RK 210 (499)
Q Consensus 151 ~~~~~--~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e---~~~I~~~v~~yA--l~~p~v~f~l-------------~~ 210 (499)
..+.. ....+||+|++. ++....| ..+|.++|++|| +.+| |.|.. ..
T Consensus 181 i~~~~~~~~~~~GT~I~L~------------Lk~d~~Efle~~~I~~ivkkys~fi~~P-I~~~~~~~~~~~~~~~~~~~ 247 (666)
T 2o1u_A 181 VIADPRGNTLGRGTTITLV------------LKEEASDYLELDTIKNLVKKYSQFINFP-IYVWSSKTGGGGKTVWDWEL 247 (666)
T ss_dssp EEECTTCCSSSSEEEEEEE------------ECTTTTTSSSTTHHHHHHHHHSTTCCSC-EEEEECC-------CCEEEE
T ss_pred EEecccCCCCCCCeEEEEE------------EccchhhhccHHHHHHHHHHHHhhCCCc-eEEeccccccccccccceEE
Confidence 22221 235799999997 2322223 578999999999 8888 87733 12
Q ss_pred CCceeeeeecCCCCCHHHHHHHHhC---hhhhccceEeeecccCCCCcceEEEEEEEeCCC------CCC----CCceEE
Q 010846 211 HGAARADVHSIATSSRLDSIRTVYG---VSVASNLVQLEASEYNDSSSFVFKMDGYVSNSN------YVA----KKTTMV 277 (499)
Q Consensus 211 ~g~~~~~l~t~~~~s~~~~i~~ifG---~~~a~~l~~i~~~~~~~~~~~~~~v~G~is~~~------~~~----kk~~~~ 277 (499)
.++.++.|..++..-..+.+...|+ ......|..+.+..+ ..+.+.|++..|. +.. ++..+.
T Consensus 248 iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~~~pl~~ih~~~e-----g~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~ 322 (666)
T 2o1u_A 248 MNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAE-----GEVTFKSILFVPTSAPRGLFDEYGSKKSDYIK 322 (666)
T ss_dssp CSCCSCTTTSCTTTCCHHHHHHHHHHTTCTTSCCSEEEEEEEC-----SSSCEEEEEEECSSCCC------------CEE
T ss_pred EecCccccccCcccccHHHHHHHHhhhccccccCeeEEEeccc-----CcEEEEEEEEcCCCCchhhhhhccccccCCeE
Confidence 2233455655554333457788887 344566777776554 2388899988776 332 355688
Q ss_pred EEEcCcccCChHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceecccCCCCCeEecCChhHHHHHHHHHHHH
Q 010846 278 LFVNDRLVECAPLKRAVEIVYAATFPKASKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQELIVEKIQSAVEL 350 (499)
Q Consensus 278 lFIN~R~V~~~~L~kaI~~~y~~~lpk~~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~I~~~I~~~i~~ 350 (499)
||||+|+|.... ..++|. -+.||...++|..+|+||. ||. +.++.++..|++.|..
T Consensus 323 LYVn~vfI~d~~---------~~llP~---~l~FvkGvVDs~dLplNVS---RE~--LQ~~~~l~~I~~~l~k 378 (666)
T 2o1u_A 323 LYVRRVFITDDF---------HDMMPK---YLNFVKGVVDSDDLPLNVS---RET--LQQHKLLKVIRKKLVR 378 (666)
T ss_dssp EEETTEEEESCC---------CTTSCG---GGTTCEEEEEESSSCSSSC---HHH--HHTCHHHHHHHHHHHH
T ss_pred EEEcCeEeeCch---------hhhhHH---HHHHeeeeeCHhhCCCccc---chh--hccCHHHHHHHHHHHH
Confidence 999999997764 566665 2335667999999999995 553 4566677777766644
No 14
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=99.91 E-value=2.2e-25 Score=215.60 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=132.8
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCC----------------ceEEEEe-eCCeeEEEEEECCCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------SINVVVK-DGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At----------------~I~I~i~-~~g~~~i~V~DNG~GI~ 83 (499)
.|++|.+-+++.|.++ +..+|+|||+||+||+|+ .|.|.|. +++...|+|.|||+||+
T Consensus 17 ei~~ll~ll~~~lYs~-----~~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs 91 (228)
T 3t0h_A 17 EIAQLMSLIINTFYSN-----KEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 91 (228)
T ss_dssp HHHHHHHHHHHSCCSC-----TTHHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred eHHHHHHHHHHhhcCC-----cHHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCC
Confidence 4788888888888887 478999999999999875 4555553 34456799999999999
Q ss_pred cccHHhhhhhcccCCcccccc-c---ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee-ecccc-cc
Q 010846 84 YEDLPILCERHTTSKLSKYED-L---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPK-AC 156 (499)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~~d-l---~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~-~~~~~-~~ 156 (499)
++|+...+.++++||...|.| + ..+.++||||+||+|+..|| +|+|.||+.+ ..||++.+.+|.. ...+. +.
T Consensus 92 ~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~-~~~~~w~~~g~~~~~v~~~~~~ 170 (228)
T 3t0h_A 92 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGE 170 (228)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCC-CCcEEEEEcCCceEEEeecCCC
Confidence 999999999999999877654 4 46789999999999999999 7999999986 4689998876643 22222 24
Q ss_pred cCCCceEEEEEeeechhhhhhhhccCCchhH---HHHHHHHHHHH--hhCC
Q 010846 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDY---TKIVDLLSRMA--IHHT 202 (499)
Q Consensus 157 ~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~---~~I~~~v~~yA--l~~p 202 (499)
+...||+|+|+ ||+...|+ .+|.++|++|| |.+|
T Consensus 171 ~~~~GT~I~v~------------Lk~~~~E~~e~~~i~~iv~~~a~~l~~P 209 (228)
T 3t0h_A 171 PMGRGTKVILH------------LKEDQTEYLEERRIKEIVKKHSQFIGYP 209 (228)
T ss_dssp CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHSTTCSSC
T ss_pred CCCCCcEEEEE------------ECCchhhhhhHHHHHHHHHHHHhhCCCC
Confidence 56899999998 55555566 89999999999 7776
No 15
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=99.90 E-value=1.2e-23 Score=202.97 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=138.9
Q ss_pred CCccccccChhHHHHhcCCccccC-----HHHHHHHHHHchhhc----CCCceEEEEeeCCeeEEEEEECCCCCCccc--
Q 010846 18 EPPKIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYED-- 86 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi~~-----~~~~vkELieNSlDA----~At~I~I~i~~~g~~~i~V~DNG~GI~~~d-- 86 (499)
....|+.|..--.-|.+.|.+|.+ +..+|+|+|+||+|+ +|+.|.|.+..+| .|+|.|||.||+.++
T Consensus 12 ~~~~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Eiv~NaiD~~~~g~~~~I~V~i~~~g--~i~V~DnG~GIp~~~h~ 89 (226)
T 4emv_A 12 NDDAIQVLEGLDAVRKRPGMYIGSTDGAGLHHLVWEIVDNAVDEALSGFGDRIDVTINKDG--SLTVQDHGRGMPTGMHA 89 (226)
T ss_dssp -----CCCBCTHHHHHCHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS--CEEEEECSSCCCCSBCG
T ss_pred ChhhcEEcchhHHHhhCCceEEcCCCcccHHHHHHHHHHHHHHHHhcCCCcEEEEEEeCCC--eEEEEEcCCCccccccc
Confidence 345799999988889999999866 789999999999999 8999999998877 599999999999998
Q ss_pred -----HHhh-hhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcC-eeecccc---c
Q 010846 87 -----LPIL-CERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK---A 155 (499)
Q Consensus 87 -----l~~~-~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g-~~~~~~~---~ 155 (499)
++.+ +..|++||+. |.....+.||||+|+++++.+| +++|+++..+ ..|++.|.+| ....... +
T Consensus 90 ~~~~~~e~v~t~lhag~Kfd---~~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g--~~~~q~f~~Gg~~~~~l~~ig~ 164 (226)
T 4emv_A 90 MGIPTVEVIFTILHAGGKFG---QGGYKTSGGLHGVGSSVVNALSSWLEVEITRDG--AVYKQRFENGGKPVTTLKKIGT 164 (226)
T ss_dssp GGCBHHHHHHHCBC-----------------CGGGCCHHHHHHTEEEEEEEEEETT--EEEEEEEETTTEESSCSEEEEE
T ss_pred cCceehheeEEeecccCccC---ccceEeccccccccchhhhhcccceEEEEEeCC--cEEEEEECCCCEEcCCceEecc
Confidence 7765 5799999964 4455789999999999999999 7999998865 3689999998 7643322 2
Q ss_pred cc-CCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC
Q 010846 156 CA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 156 ~~-~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
++ ...||+|++. |.+..+ +....++..|.+.++.+|..+|+|+|.|.+..
T Consensus 165 ~~~~~~GT~V~F~------PD~~iF-~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 215 (226)
T 4emv_A 165 ALKSKTGTKVTFM------PDATIF-STTDFKYNTISERLNESAFLLKNVTLSLTDKR 215 (226)
T ss_dssp CCTTCCEEEEEEE------ECTTTC-SCCCCCHHHHHHHHHHHHHHHCSCEEEEEETT
T ss_pred cCCCCCCeEEEEE------ECHHHc-CCCCcCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 32 6799999996 777665 55666889999999999999999999998753
No 16
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=99.90 E-value=1.5e-24 Score=212.17 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=131.5
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCC----------------ceEEEEe-eCCeeEEEEEECCCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------SINVVVK-DGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At----------------~I~I~i~-~~g~~~i~V~DNG~GI~ 83 (499)
.|++|.+-+++.|.++. ..+|+|||+||+||+|+ .+.|.|. +.+...|+|.|||+||+
T Consensus 45 ei~~Ll~ll~~~lYs~~-----~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt 119 (256)
T 3o0i_A 45 EIAQLMSLIINTFYSNK-----EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMT 119 (256)
T ss_dssp HHHHHHHHHHHSCCSCT-----THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCC
T ss_pred eHHHHHHHHHHhccCCc-----HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcC
Confidence 48889999898887765 67899999999999875 3444443 24456799999999999
Q ss_pred cccHHhhhhhcccCCcccccc-c---ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee-ecccc-cc
Q 010846 84 YEDLPILCERHTTSKLSKYED-L---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPK-AC 156 (499)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~~d-l---~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~-~~~~~-~~ 156 (499)
++||...+.++++||...|.| | ..+.++||||+||+|+..|| +|+|.||+.+ ..+|++...+|.. ...+. +.
T Consensus 120 ~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f~Vadkv~V~Sr~~~-~~g~~w~s~gg~~~~v~~~~~~ 198 (256)
T 3o0i_A 120 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHND-DEQYAWESSAGGSFTVRTDTGE 198 (256)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTT-SCEEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhhccCCeEEEEEcCCC-CceEEEEEeccceEEEeeCCCC
Confidence 999999999999999887754 4 46789999999999999999 7999999986 4689998876643 22221 34
Q ss_pred cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHH--hhCCC
Q 010846 157 AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHTN 203 (499)
Q Consensus 157 ~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yA--l~~p~ 203 (499)
+...||+|+|+ +|..+..-.+..+|.++|++|| |.+|-
T Consensus 199 ~~~~GT~I~l~---------LK~~~~e~~e~~~I~~iv~k~s~~l~~PI 238 (256)
T 3o0i_A 199 PMGRGTKVILH---------LKEDQTEYLEERRIKEIVKKHSQFIGYPI 238 (256)
T ss_dssp CCSSEEEEEEE---------ECGGGGGGGCHHHHHHHHHHHCTTCSSCE
T ss_pred CCCCCcEEEEE---------EcCcchhhccHHHHHHHHHHHHhhCCCCe
Confidence 56899999998 2222222224489999999999 88773
No 17
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=99.90 E-value=2.4e-23 Score=216.66 Aligned_cols=255 Identities=13% Similarity=0.108 Sum_probs=173.7
Q ss_pred cccccChhHHHHhcCCccc---------------------------cCHHHHHHHHHHchhhcC-----CCceEEEEeeC
Q 010846 21 KIHRLEESVVNRIAAGEVI---------------------------QRPVSAVKELVENSLDAD-----ATSINVVVKDG 68 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi---------------------------~~~~~~vkELieNSlDA~-----At~I~I~i~~~ 68 (499)
.+++|..--.-|.+.|++| ..+.++|+|||+||+||+ |+.|.|.|+.+
T Consensus 5 ~~~~L~glE~VrkRPgmYiGst~~~~~~~~v~~~~~~~~~~~~~~~~GL~~lv~EivdNsiDe~~~~g~~~~I~V~i~~~ 84 (400)
T 1zxm_A 5 IYQKKTQLEHILLRPDTYIGSVELVTQQMWVYDEDVGINYREVTFVPGLYKIFDEILVNAADNKQRDPKMSCIRVTIDPE 84 (400)
T ss_dssp HSEECCHHHHHHHCCHHHHCCCSCEEEEEEEEETTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred hheecchHHHHHhCCCcEEccCCccccceeeeccccccccccccccchHHHHHHHHHhhHHhHHhhcCCCceEEEEEECC
Confidence 4677777777777777776 356899999999999998 99999999986
Q ss_pred CeeEEEEEECCCCCCccc--------HHhhh-hhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCcc
Q 010846 69 GLKLIQVSDDGHGIRYED--------LPILC-ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLH 138 (499)
Q Consensus 69 g~~~i~V~DNG~GI~~~d--------l~~~~-~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~ 138 (499)
+ ..|+|.|||+||+.++ ++.++ .+|++||+.+ |.+.. +.||||+|+++++.+| +++|+++...+..
T Consensus 85 ~-~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsKf~~--~~ykv-SgGlhGvGlsvVnAlS~~l~v~v~~~~~g~ 160 (400)
T 1zxm_A 85 N-NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSNYDD--DEKKV-TGGRNGYGAKLCNIFSTKFTVETASREYKK 160 (400)
T ss_dssp T-TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESCCCG--GGCCC-CSCCSSCHHHHHHHTEEEEEEEEEETTTTE
T ss_pred C-CEEEEEECCCcccCccccccCccchhheeeeecccCCCCC--Ccccc-cCCccccceeeeEEeccceEEEEecCCCCc
Confidence 3 2699999999999998 55554 5899999874 56665 9999999999999997 6999998865667
Q ss_pred EEEEEEEcCeeecccc---cccCCCceEEEEEeeechhhhhhhhccCCchhHHH---HHHHHHHHHhhCCCeEEEEEECC
Q 010846 139 GYRVSYRDGVMESEPK---ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 139 ~~~~~~~~g~~~~~~~---~~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~---I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
+|+..|.+|....... ++....||+|++. |.|+++ +...-.+.. |.+.++.+|+.+|++.|.|.+..
T Consensus 161 ~~~~~~~~G~~~~~~~~ig~~~~~~GT~V~F~------Pd~~iF-~~~ef~~~~~~~l~~rlrelA~lnpgv~i~l~der 233 (400)
T 1zxm_A 161 MFKQTWMDNMGRAGEMELKPFNGEDYTCITFQ------PDLSKF-KMQSLDKDIVALMVRRAYDIAGSTKDVKVFLNGNK 233 (400)
T ss_dssp EEEEEEETTTTEECCCEEEECCSCCEEEEEEE------ECGGGG-TCSSCCHHHHHHHHHHHHHHHHHSSSCEEEETTEE
T ss_pred EEEEEEccCccccCcceeccCCCCCccEEEEE------EChHHh-CceeecHHHHHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 8999999884322222 2335689999997 888776 433223333 88999999999999999996421
Q ss_pred ceeeeeecCCCCCHHHHHHHHhChhh--hccceEeeecccCCCCcceEEEEEEEeCCCCCCCCceEEEEEcCcccCC---
Q 010846 213 AARADVHSIATSSRLDSIRTVYGVSV--ASNLVQLEASEYNDSSSFVFKMDGYVSNSNYVAKKTTMVLFVNDRLVEC--- 287 (499)
Q Consensus 213 ~~~~~l~t~~~~s~~~~i~~ifG~~~--a~~l~~i~~~~~~~~~~~~~~v~G~is~~~~~~kk~~~~lFIN~R~V~~--- 287 (499)
. +...+.+-+..+-.... ....+.+....+ . ..+.+--..+...+ .++-|+|+-+-..
T Consensus 234 --~------~~~Gi~~yv~~l~~~~~~~~~~~~~~~~~~~-~---~~~eva~~~~~~~~-----~~~sfvN~I~T~~GGT 296 (400)
T 1zxm_A 234 --L------PVKGFRSYVDMYLKDKLDETGNSLKVIHEQV-N---HRWEVCLTMSEKGF-----QQISFVNSIATSKGGR 296 (400)
T ss_dssp --C------CCCSHHHHHHHHHTTCBCSSSSBCCCEEEEE-E---TTEEEEEEECSSSC-----EEEEEETTEECTTEEH
T ss_pred --C------CCCCHHHHHHHHhcCCCccCCCCcceEEeec-C---cEEEEEEEEcCCCc-----eEEEEeCCccCCCCCc
Confidence 1 12355555554433211 011111111111 1 11333221221112 3678999977654
Q ss_pred --hHHHHHHHHHHHhcCC
Q 010846 288 --APLKRAVEIVYAATFP 303 (499)
Q Consensus 288 --~~L~kaI~~~y~~~lp 303 (499)
..++.+|.++...|.-
T Consensus 297 H~~gfr~altr~i~~y~~ 314 (400)
T 1zxm_A 297 HVDYVADQIVTKLVDVVK 314 (400)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 3466666666666653
No 18
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=99.89 E-value=1.1e-23 Score=205.24 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=129.0
Q ss_pred CccccccChhHHHHhcCCccccCHHHHHHHHHHchhhcC----------------CCc--eEEEEeeCCeeEEEEEECCC
Q 010846 19 PPKIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDAD----------------ATS--INVVVKDGGLKLIQVSDDGH 80 (499)
Q Consensus 19 ~~~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~----------------At~--I~I~i~~~g~~~i~V~DNG~ 80 (499)
...|++|++.++++|.+ +|..+|+|||+||+||+ |+. |.|.++.++. .|+|.|||+
T Consensus 30 ~~~i~~L~~~l~~~lys-----~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~~~~~-~i~I~DnG~ 103 (235)
T 2ior_A 30 QSEVKQLLHLMIHSLYS-----NKEIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKR-TLTISDNGV 103 (235)
T ss_dssp CHHHHHHHHHHHHHTGG-----GTTHHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEETTTT-EEEEEECSS
T ss_pred ehhHHHHHHHHHHhhcC-----CHHHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEcCCce-EEEEEECCC
Confidence 34589999999999888 78899999999999998 444 5555555554 599999999
Q ss_pred CCCcccHHhhhhhcccCCcccccc-c-----ccccccCccchHHHhhhhhc-eEEEEEEEcCC--ccEEEEEEEcCee-e
Q 010846 81 GIRYEDLPILCERHTTSKLSKYED-L-----QSIKSMGFRGEALASMTYVG-HVTVTTITKGH--LHGYRVSYRDGVM-E 150 (499)
Q Consensus 81 GI~~~dl~~~~~r~~TSK~~~~~d-l-----~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~--~~~~~~~~~~g~~-~ 150 (499)
||+++|+...+.++++|+...|.+ + .....+|++|+|+.|...++ +|+|.||+.++ ..+|++.+.++.. .
T Consensus 104 GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~~~ 183 (235)
T 2ior_A 104 GMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYT 183 (235)
T ss_dssp CCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSEEE
T ss_pred CCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCcEE
Confidence 999999999999999998765522 2 23578999999997775555 79999999886 7789988865432 2
Q ss_pred cccccccCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHH--hhCC
Q 010846 151 SEPKACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMA--IHHT 202 (499)
Q Consensus 151 ~~~~~~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yA--l~~p 202 (499)
..+ ......||+|+|. | . +.+++++ +..+|.+++++|| +.+|
T Consensus 184 i~~-~~~~~~GT~V~v~-L-k--~~~~~~~-----e~~~i~~lv~~ya~~l~~P 227 (235)
T 2ior_A 184 VAD-ITKEDRGTEITLH-L-R--EGEDEFL-----DDWRVRSIISKYSDHIALP 227 (235)
T ss_dssp EEE-ECCCSCEEEEEEE-E-C--TTCGGGG-----CHHHHHHHHHHHTTSCCSC
T ss_pred Eee-CCCCCCCEEEEEE-E-c--CchhhhC-----CHHHHHHHHHHHhccCCCC
Confidence 221 1356799999996 2 1 2343333 5689999999999 7776
No 19
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=99.87 E-value=3.5e-22 Score=189.42 Aligned_cols=165 Identities=22% Similarity=0.293 Sum_probs=140.9
Q ss_pred cccccChhHHHHhcCCccccC-----HHHHHHHHHHchhh---cC-CCceEEEEeeCCeeEEEEEECCCCCCcccHHhhh
Q 010846 21 KIHRLEESVVNRIAAGEVIQR-----PVSAVKELVENSLD---AD-ATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILC 91 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~-----~~~~vkELieNSlD---A~-At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~ 91 (499)
.|+.|..--.-|.+.|.+|.+ |.++|+|||+||+| || |+.|.|.++.+| .|+|.|||+||+.+
T Consensus 6 ~i~~l~~le~vr~RPgmYiGs~~~~gl~~~v~Elv~NsiD~~~ag~~~~I~V~i~~~g--~i~V~DnG~Gip~~------ 77 (198)
T 3ttz_A 6 QIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYANQIEVVIEKDN--WIKVTDNGRGIPVD------ 77 (198)
T ss_dssp HHHHHHHHHHHHHSHHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEGGG--EEEEEECSSCCCCS------
T ss_pred HeEEecchHHHhcCCCcEECCCCCcchHHHHHHHHHHHHhHHhcCCCcEEEEEEeCCC--eEEEEECCCCcccc------
Confidence 588888888888999999855 79999999999999 58 999999999887 69999999999986
Q ss_pred hhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecccc--cccCCCceEEEEEe
Q 010846 92 ERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK--ACAAVKGTQIMVEN 168 (499)
Q Consensus 92 ~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~--~~~~~~GTtV~v~~ 168 (499)
+|.|||+...+++.. +++++++| +++|+++..+. .|++.|.+|....... +.+...||+|++.
T Consensus 78 -~h~~~~~~~~e~i~t----------~SvVNALS~~l~v~v~r~g~--~~~~~f~~G~~~~~l~~i~~~~~~GT~V~F~- 143 (198)
T 3ttz_A 78 -IQEKMGRPAVEVILT----------SSVVNALSQDLEVYVHRNET--IYHQAYKKGVPQFDLKEVGTTDKTGTVIRFK- 143 (198)
T ss_dssp -BCTTTSSBHHHHHHH----------TCHHHHTEEEEEEEEEETTE--EEEEEEETTEESSCCEEEEECSCCEEEEEEE-
T ss_pred -ccCcCCCccccccce----------eEehhhhcCeEEEEEEECCc--EEEEEEeCCEECCCceeccCCCCCCcEEEEE-
Confidence 788999988777532 77788897 79999988663 7999999998754332 3456899999996
Q ss_pred eechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECC
Q 010846 169 LFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHG 212 (499)
Q Consensus 169 LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g 212 (499)
|.+++++++...++..|.+.++.||+.+|+|+|.|.+..
T Consensus 144 -----Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~der 182 (198)
T 3ttz_A 144 -----ADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDER 182 (198)
T ss_dssp -----ECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEECS
T ss_pred -----ECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEeec
Confidence 888887788788999999999999999999999998853
No 20
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=99.86 E-value=1.8e-21 Score=202.28 Aligned_cols=307 Identities=17% Similarity=0.193 Sum_probs=185.5
Q ss_pred CCccccccChhHHHHhcCCccc--cCHHHHHHHHHHchhhc----CCCceEEEEeeCCeeEEEEEECCCCCCcccH----
Q 010846 18 EPPKIHRLEESVVNRIAAGEVI--QRPVSAVKELVENSLDA----DATSINVVVKDGGLKLIQVSDDGHGIRYEDL---- 87 (499)
Q Consensus 18 ~~~~I~~L~~~v~~~i~ag~vi--~~~~~~vkELieNSlDA----~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl---- 87 (499)
....|+.|..--.-|.+.|++| +++..+|+|+|+||+|+ +|+.|.|.|..+| .|+|.|||+|||.++.
T Consensus 25 ~a~~I~vL~glE~VRkRPgMYiGst~~~hlv~EivdNsiDea~ag~~~~I~V~i~~dg--sI~V~DnGrGIPv~~h~~~~ 102 (408)
T 3lnu_A 25 NAADIEVLSGLDPVKRRPGMYTDTARPNHLAQEVIDNSVDEALAGHAKQIEVTLYKDG--SCEVSDDGRGMPVDIHPEEK 102 (408)
T ss_dssp ---------CCHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTSCCEEEEEECTTS--CEEEEECSSCCCCSBCTTTC
T ss_pred CHhHceeccccHHHhcCCccEECCCCcchhhHHHHHHHHHHhhcCCCceEEEEEeCCC--eEEEEEcCCCCCcccccccC
Confidence 4457999999999999999999 56799999999999999 8999999998877 5999999999999884
Q ss_pred ----Hh-hhhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeecccc---ccc-
Q 010846 88 ----PI-LCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEPK---ACA- 157 (499)
Q Consensus 88 ----~~-~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~~---~~~- 157 (499)
+. ++..|+++|+. |.....+.|++|+|++++..+| +++|+++..+ ..|++.|.+|....+.. ++.
T Consensus 103 ~~~~e~i~t~lhaggKfd---~~~ykvSgGlhGvG~svVNALS~~l~v~v~rdG--k~~~q~f~~G~~~~~l~~ig~~~~ 177 (408)
T 3lnu_A 103 IPGVELILTRLHAGGKFN---NRNYTFSGGLHGVGVSVVNALSTKVELFIKREG--SEHRMEFRDGNAASKLEVVGTVGK 177 (408)
T ss_dssp SBHHHHHHHCC-----------------------CHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECSCCEEEEECCT
T ss_pred CcchheEEEecccCCCcC---CCceeecCCccccccceehhccCeEEEEEEECC--EEEEEEECCCEECCCceEeccCcC
Confidence 44 35889999975 4444579999999999999999 6999999765 36999999998754332 342
Q ss_pred CCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCce-eeeeecCCCCCHHHHHHHHhCh
Q 010846 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGAA-RADVHSIATSSRLDSIRTVYGV 236 (499)
Q Consensus 158 ~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~~-~~~l~t~~~~s~~~~i~~ifG~ 236 (499)
...||+|++. |.+..+ ....-++..|.++++++|..+|++.|.|.+.... ...++. ...+.+-+..+-..
T Consensus 178 ~~~GT~V~F~------PD~~iF-~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~der~~~~~~f~y--egGi~~yv~~l~~~ 248 (408)
T 3lnu_A 178 KNTGTRLRFW------ADPKYF-DTPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYF--ENGLRDYLKGEMAE 248 (408)
T ss_dssp TCCEEEEEEE------ECGGGS-SCSCCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEEEC--SSSHHHHHHHHTTT
T ss_pred CCCCcEEEEE------ECHHHh-CCCCcCHHHHHHHHHHHHhhcCCCEEEEEeccCCceeEEEc--CchHHHHHHHHhcC
Confidence 5799999986 887665 5666688899999999999999999999885321 223333 23456666655443
Q ss_pred hhhccceE----eeecccCCCCcceEEEEEEEe-CCCCCCCCceEEEEEcCcccCC-----h----HHHHHHHHHHHh--
Q 010846 237 SVASNLVQ----LEASEYNDSSSFVFKMDGYVS-NSNYVAKKTTMVLFVNDRLVEC-----A----PLKRAVEIVYAA-- 300 (499)
Q Consensus 237 ~~a~~l~~----i~~~~~~~~~~~~~~v~G~is-~~~~~~kk~~~~lFIN~R~V~~-----~----~L~kaI~~~y~~-- 300 (499)
. .++. +....+.. ..++--+. +..| ...++-|+|+-+-.. . .|.++|++....
T Consensus 249 k---~~~~~~~~~~~~~~~~-----~~ve~Al~~~~~~---~e~~~SFvN~I~T~~GGTH~~gfr~altr~in~y~~~~~ 317 (408)
T 3lnu_A 249 H---EMLPADLFVGSLKKDT-----EIVDWAAGWVPEG---ELVQESYVNLIPTAQHGTHVNGLRSGLTDALREFCDFRN 317 (408)
T ss_dssp S---CCEEEEEEEEEEECSS-----CEEEEEEEECSSS---CCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C---CcCCCCCeEeeEecCc-----eeEEEEEEEcCCC---CeEEEEEeCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 2 2211 11110100 22222221 1122 245789999977543 2 344555443332
Q ss_pred cCCCC---------CCcEEEEEEEcCCCceecccCCCCCeEecCChhH-HHHHHHHHHHHHHhc
Q 010846 301 TFPKA---------SKPFIYMSIVLPPEHVDVNVHPTKREVSLLNQEL-IVEKIQSAVELKLRQ 354 (499)
Q Consensus 301 ~lpk~---------~~P~~~L~i~i~p~~vDVNVhPtK~eV~F~~e~~-I~~~I~~~i~~~L~~ 354 (499)
+++++ ..-+++|++.+|--..+ -.||...--..-.. +-..+.+.|..+|..
T Consensus 318 l~kk~~~l~~~DiregL~aviSvkv~~PqFe---gQTK~kL~n~ev~~~V~~~v~~~l~~~l~e 378 (408)
T 3lnu_A 318 LLPRGVKLAPEDVWDRVTFVLSLKMTDPQFS---GQTKERLSSRQAAGFIEGAAHDAFSLYLNQ 378 (408)
T ss_dssp CCCTTCCCCHHHHHTTEEEEEEEECSSCCEE---STTSCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHhhCeEEEEEEEcCCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 23368899999855554 35666543222122 334555566655543
No 21
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=99.83 E-value=1.5e-20 Score=183.08 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=120.2
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCC------------------CceEEEEeeCCeeEEEEEECCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~A------------------t~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
.|++|.+.+++.|.++ |..+|+|||+||+||+| ..|.|.++.++ ..|.|.|||+||
T Consensus 17 ei~~L~~ll~~~lys~-----~~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~-~~i~I~DnG~GM 90 (236)
T 2gqp_A 17 EVNRMMKLIINSLYKN-----KEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEK-NLLHVTDTGVGM 90 (236)
T ss_dssp HHHHHHHHHHHHTTTC-----TTHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTT-TEEEEEECSCCC
T ss_pred hHHHHHHHHHHhhcCC-----chHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCC-CEEEEEECCcCC
Confidence 4889999999998887 68999999999999987 45677666554 469999999999
Q ss_pred CcccHHhhhhhcccC-------Ccccc-----cccccccccCccchHHHhhhhhceEEEEEEEcCCccEEEEEEEcCeee
Q 010846 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVGHVTVTTITKGHLHGYRVSYRDGVME 150 (499)
Q Consensus 83 ~~~dl~~~~~r~~TS-------K~~~~-----~dl~~~~t~GfrGeaLaSis~vs~l~I~Sr~~~~~~~~~~~~~~g~~~ 150 (499)
+++||...+.++++| |+... .|+..+..||+++.++++++ .+|+|.||+.++ .+|.+..++|...
T Consensus 91 t~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va--~~v~V~Sr~~~~-~~~~w~~~gg~~~ 167 (236)
T 2gqp_A 91 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVA--DKVIVTSKHNND-TQHIWESDSNEFS 167 (236)
T ss_dssp CHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTE--EEEEEEEECTTS-CCEEEEESSSCEE
T ss_pred CHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcC--CEEEEEEeCCCC-ceEEEEEeCCEEE
Confidence 999999988888888 54432 46666777888777666655 579999999875 4787776665543
Q ss_pred ccccc--ccCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCC-CeEEEEEE
Q 010846 151 SEPKA--CAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT-NVSFSCRK 210 (499)
Q Consensus 151 ~~~~~--~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p-~v~f~l~~ 210 (499)
..+.+ ....+||+|++. |- +.+..++ +..+|.+++++||-+-+ .|.+...+
T Consensus 168 i~~~~~~~~~~~GT~I~l~-Lk---~~~~~~l-----e~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 168 VIADPRGNTLGRGTTITLV-LK---EEASDYL-----ELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp EEECTTCSCSSSEEEEEEE-EC---GGGGGGG-----CHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred EEeccCCCCCCCCeEEEEE-EC---CcchhhC-----hHHHHHHHHHHHhhhCCCceEEeeee
Confidence 22221 245799999997 21 1111222 46889999999995543 35554433
No 22
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=99.81 E-value=2.9e-20 Score=183.65 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=123.8
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCC----------------CceEEEEe-eCCeeEEEEEECCCCCCc
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------TSINVVVK-DGGLKLIQVSDDGHGIRY 84 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~A----------------t~I~I~i~-~~g~~~i~V~DNG~GI~~ 84 (499)
|++|.+.+++.|.+ +|..+|+|||+||+||+| +.|.|.+. +++...|+|.|||+||++
T Consensus 54 i~~Ll~ll~~~lys-----~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~ 128 (264)
T 1yc1_A 54 IAQLMSLIINTFYS-----NKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTK 128 (264)
T ss_dssp HHHHHHHHHHCCCS-----CTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCH
T ss_pred HHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCH
Confidence 67788887776654 889999999999999998 77888775 344557999999999999
Q ss_pred ccHHhhhhhcccCCcccc-ccc---ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCe-eecccc-ccc
Q 010846 85 EDLPILCERHTTSKLSKY-EDL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK-ACA 157 (499)
Q Consensus 85 ~dl~~~~~r~~TSK~~~~-~dl---~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~-~~~~~~-~~~ 157 (499)
+||...+.++++|+...| +++ ......|++|.++.|...++ +|+|.||+.+. .+|.+...+|. ....+. ...
T Consensus 129 edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~-~~~~w~~~~~~~~~i~~~~~~~ 207 (264)
T 1yc1_A 129 ADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDD-EQYAWESSAGGSFTVRTDTGEP 207 (264)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSSC
T ss_pred HHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCC-ceEEEEEcCCceEEEeecCCCC
Confidence 999999999999986654 111 23467888899987777676 69999999874 47888776543 322221 124
Q ss_pred CCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCC
Q 010846 158 AVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT 202 (499)
Q Consensus 158 ~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p 202 (499)
..+||+|+|. |. +.+++++ +..+|.+++++||.+-|
T Consensus 208 ~~~GT~I~l~-Lk---~~~~e~~-----e~~~i~~lv~k~s~fi~ 243 (264)
T 1yc1_A 208 MGRGTKVILH-LK---EDQTEYL-----EERRIKEIVKKHSQFIG 243 (264)
T ss_dssp CSSEEEEEEE-EC---GGGGGGG-----SHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEE-EC---Cchhhhh-----hHHHHHHHHHHHHhhCC
Confidence 5789999998 32 1233332 56889999999996554
No 23
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=99.79 E-value=1.8e-19 Score=173.74 Aligned_cols=172 Identities=16% Similarity=0.202 Sum_probs=120.0
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCC----------------ceEEEEe-eCCeeEEEEEECCCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT----------------SINVVVK-DGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At----------------~I~I~i~-~~g~~~i~V~DNG~GI~ 83 (499)
.|++|.+-+++.|.++. ..+|+|||+||+||+|+ .|.|.+. +++...|+|.|||+||+
T Consensus 11 ~~~~l~~ll~~~lys~~-----~~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs 85 (220)
T 2wer_A 11 EITQLMSLIINTVYSNK-----EIFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMT 85 (220)
T ss_dssp HHHHHHHHHHHHCCSST-----THHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCC
T ss_pred cHHHHHHHHHHhccCCc-----hHHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCC
Confidence 36777777887777665 58999999999999983 4444443 23345799999999999
Q ss_pred cccHHhhhhhcccCCcccc----cccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCe-eecccc--c
Q 010846 84 YEDLPILCERHTTSKLSKY----EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPK--A 155 (499)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~----~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~-~~~~~~--~ 155 (499)
++|+...+.++++|.-..| .+.......|++|.++.|...++ +|+|.||+.+. .+|.+.+.+|. ....+. +
T Consensus 86 ~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~-~~~~~~~~~~~~~~i~~~~~~ 164 (220)
T 2wer_A 86 KAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLDEVN 164 (220)
T ss_dssp HHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSSEEEEEECSSS
T ss_pred HHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCC-ceeEEEeCCCCceEeecccCC
Confidence 9999999989988842211 01123456788888887776666 79999999874 47888776543 222221 2
Q ss_pred ccCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCC-CeEEE
Q 010846 156 CAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT-NVSFS 207 (499)
Q Consensus 156 ~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p-~v~f~ 207 (499)
....+||+|+|+ |. +.+++++ +..+|.+++++||.+-+ .|.+.
T Consensus 165 ~~~~~GT~I~l~-Lk---~~~~~~~-----e~~~i~~~v~~~a~~l~~PI~~~ 208 (220)
T 2wer_A 165 ERIGRGTILRLF-LK---DDQLEYL-----EEKRIKEVIKRHSEFVAYPIQLV 208 (220)
T ss_dssp CCCSSEEEEEEE-EC---TTCGGGG-----CHHHHHHHHHHHCTTCCSCEEEC
T ss_pred CCCCCCeEEEEE-EC---cchHHhC-----CHHHHHHHHHHHHhcCCCceEEE
Confidence 356789999998 32 1233333 56889999999996654 44443
No 24
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.73 E-value=6.3e-19 Score=192.36 Aligned_cols=201 Identities=18% Similarity=0.222 Sum_probs=135.8
Q ss_pred cCHHHHHHHHHHchhhcCCC-----ceEEEEeeCC--eeEEEEEECCCCCCcccHHhhhhhc-ccCCccccccccccccc
Q 010846 40 QRPVSAVKELVENSLDADAT-----SINVVVKDGG--LKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIKSM 111 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At-----~I~I~i~~~g--~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~~~t~ 111 (499)
..+.++|+|||+||+||+++ .|.|.+..++ ...|+|+|||+||++++++.++.+| +|+|+.... .+.
T Consensus 36 ~~L~~Vl~ELV~NAIDa~~~~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~~~-----~s~ 110 (621)
T 2q2e_B 36 RSLITTVKEAVDNALDACEEAGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHALK-----QSR 110 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccccc-----ccC
Confidence 46789999999999999886 8999887643 4579999999999999999999887 667765421 467
Q ss_pred CccchHHHhhhhhceE------EEEEEEcCCccEEEEEE----EcCeeec---ccccccCCCceEEEEEeeechhhhhhh
Q 010846 112 GFRGEALASMTYVGHV------TVTTITKGHLHGYRVSY----RDGVMES---EPKACAAVKGTQIMVENLFYNMIARRK 178 (499)
Q Consensus 112 GfrGeaLaSis~vs~l------~I~Sr~~~~~~~~~~~~----~~g~~~~---~~~~~~~~~GTtV~v~~LF~n~PvRrk 178 (499)
|++|+||+++..+++. +|.|+..+...+|++.+ ..|.... .+.++...+||+|++. |.
T Consensus 111 Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~~~~~~GT~V~~~--f~------- 181 (621)
T 2q2e_B 111 GQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRDWFRPHGTQIELE--MR------- 181 (621)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECCCSCSSCCCEEEE--CS-------
T ss_pred CCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhcccccccccccccCCCCCCCEEEEE--ec-------
Confidence 9999999999888753 89999877667888887 4443321 2334567799999998 32
Q ss_pred hccCCchh--HHHHHHHHHHHHhhCCCeEEEEEECCceeeeeecCCC-CCHHHHHH----HHhChhhhccceEeeecccC
Q 010846 179 TLQNSSDD--YTKIVDLLSRMAIHHTNVSFSCRKHGAARADVHSIAT-SSRLDSIR----TVYGVSVASNLVQLEASEYN 251 (499)
Q Consensus 179 ~lk~~~~e--~~~I~~~v~~yAl~~p~v~f~l~~~g~~~~~l~t~~~-~s~~~~i~----~ifG~~~a~~l~~i~~~~~~ 251 (499)
....+ +..|.+.+++||+++|+++|+|.+.+. ..+++.+. ..+.++.. .+||......++.+.+.+
T Consensus 182 ---~~~~~~~~~~I~~~L~~lAllnpgv~I~L~d~~~--~~~~~~gg~~~L~~~~~~i~p~~~G~~~~~~eval~~~~-- 254 (621)
T 2q2e_B 182 ---AAYVKGRRQSIYEYLKATAIVNPHARITLIDPDG--NEEVFERATDKMPEPAEEILPHPEGIELGTLMKMLHYTE-- 254 (621)
T ss_dssp ---CCCCCCSSSSSHHHHHHHHHHCCSCEEEECCTTS--CCEEEECCCCCCCCCCCCCCCCSTTCCHHHHHHHHHHCC--
T ss_pred ---CccchHHHHHHHHHHHHHHhhCCCCEEEEEECCc--eEEEeCCcccchhcccccccCCceeeccCeEEEEEeeCC--
Confidence 11112 356889999999999999999988763 23333332 11111222 356755443344444221
Q ss_pred CCCcceEEEEEEEeC
Q 010846 252 DSSSFVFKMDGYVSN 266 (499)
Q Consensus 252 ~~~~~~~~v~G~is~ 266 (499)
+|.+.||+.+
T Consensus 255 -----~~~i~sFvN~ 264 (621)
T 2q2e_B 255 -----RQKLAPFLRY 264 (621)
T ss_dssp ----------CTTSS
T ss_pred -----CeEEEEEeCC
Confidence 2678888766
No 25
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.70 E-value=2.1e-16 Score=168.21 Aligned_cols=156 Identities=19% Similarity=0.283 Sum_probs=119.3
Q ss_pred cCHHHHHHHHHHchhhcCCC-----ceEEEEeeC----CeeEEEEEECCCCCCcccHHhhhhhc-ccCCccccccccccc
Q 010846 40 QRPVSAVKELVENSLDADAT-----SINVVVKDG----GLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIK 109 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At-----~I~I~i~~~----g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~~~ 109 (499)
..+.++|.|||+||+||+++ .|.|.+... +...|+|+|||+||++++++.++.+| +++|... ..
T Consensus 31 ~~L~qvl~nLv~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~~------~~ 104 (471)
T 1mu5_A 31 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVN------RQ 104 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGTCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCCC------SC
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccccc------cc
Confidence 35789999999999999987 799998753 46679999999999999999999997 7777632 25
Q ss_pred ccCccchHHHhhhhhce------EEEEEEEcCCccEEEEEE--E----cCeeecccccc---cCCCceEEEEEeeechhh
Q 010846 110 SMGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKAC---AAVKGTQIMVENLFYNMI 174 (499)
Q Consensus 110 t~GfrGeaLaSis~vs~------l~I~Sr~~~~~~~~~~~~--~----~g~~~~~~~~~---~~~~GTtV~v~~LF~n~P 174 (499)
+.|++|.+|+++..+++ ++|.|+..+...++.+.+ . .|... ...+. ...+||+|+|. |+.+.+
T Consensus 105 ~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l~~~~~ 182 (471)
T 1mu5_A 105 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-IPGDWP 182 (471)
T ss_dssp CSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEE-EEEEEECCTTCCEEEEEEE-EECCHH
T ss_pred CCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccc-ccccccCCCCCCCEEEEEE-EcCCcc
Confidence 67999999999888775 999999876654555543 2 33332 22233 55789999998 333222
Q ss_pred hhhhhccCCchhHHHHHHHHHHHHhhCCCeEEEEEECCc
Q 010846 175 ARRKTLQNSSDDYTKIVDLLSRMAIHHTNVSFSCRKHGA 213 (499)
Q Consensus 175 vRrk~lk~~~~e~~~I~~~v~~yAl~~p~v~f~l~~~g~ 213 (499)
+...+|.+++++||+.+|++.|.+..++.
T Consensus 183 ----------e~~~~I~~~l~~~al~~p~v~i~l~~~~~ 211 (471)
T 1mu5_A 183 ----------KAKSRIYEYIKRTYIITPYAEFIFKDPEG 211 (471)
T ss_dssp ----------HHHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred ----------hHHHHHHHHHHHHHhHCCCeEEEEEECCc
Confidence 12368999999999999999999998754
No 26
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=99.69 E-value=2e-17 Score=163.63 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=116.7
Q ss_pred cccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCC----------------C--ceEEEEeeCCeeEEEEEECCCCC
Q 010846 21 KIHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA----------------T--SINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~A----------------t--~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
.|++|.+-+++.|.++. ..+|+|||+||+||+| + .|.|.++.+ ...|+|.|||+||
T Consensus 13 ei~~Ll~li~~~lYsn~-----eifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~-~~~l~I~DnGiGM 86 (269)
T 1qy5_A 13 EVNRMMKLIINSLYKNK-----EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE-KNLLHVTDTGVGM 86 (269)
T ss_dssp HHHHHHHHHHHHHTTCT-----THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETT-TTEEEEEECSCCC
T ss_pred hHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCC-ceEEEEEECCCCC
Confidence 47888899998887764 4599999999999986 3 455555443 3469999999999
Q ss_pred CcccHHhhhhhcccC-------Ccccc-----cccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee
Q 010846 83 RYEDLPILCERHTTS-------KLSKY-----EDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM 149 (499)
Q Consensus 83 ~~~dl~~~~~r~~TS-------K~~~~-----~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~ 149 (499)
+++||...+.++++| |+... .|. ...|..|.+++|...+| +|+|.||+.+. .+|.+...+|..
T Consensus 87 t~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~---~~IG~fGvGfySaf~va~~v~V~Sk~~~~-~~~~w~s~gg~~ 162 (269)
T 1qy5_A 87 TREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTS---ELIGQFGVGFYSAFLVADKVIVTSKHNND-TQHIWESDSNEF 162 (269)
T ss_dssp CHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCH---HHHHHTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSSCE
T ss_pred CHHHHHHHhhhhcccccHHHHHhhhhcccccccch---hhcCCccccHHHHhhccceEEEEEEecCC-cEEEEEEeCCEE
Confidence 999998888788777 33221 233 33455566667776776 69999999875 577776655555
Q ss_pred ecccc--cccCCCceEEEEEeeechhhhhhhhccCCchhHHHHHHHHHHHHhhCC-CeEEEEE
Q 010846 150 ESEPK--ACAAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVDLLSRMAIHHT-NVSFSCR 209 (499)
Q Consensus 150 ~~~~~--~~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~~v~~yAl~~p-~v~f~l~ 209 (499)
...+. .....+||+|++. | . +....++ +..+|.+++++|+.+-+ .|.+...
T Consensus 163 ~i~~~~~~~~~~~GT~I~L~-L-k--~d~~e~l-----e~~~i~~lvkkys~fi~~PI~l~~~ 216 (269)
T 1qy5_A 163 SVIADPRGNTLGRGTTITLV-L-K--EEASDYL-----ELDTIKNLVKKYSQFINFPIYVWSS 216 (269)
T ss_dssp EEEECTTCSCSSSEEEEEEE-E-C--GGGGGGG-----SHHHHHHHHHTTCTTCSSCEEEEEE
T ss_pred EEEeccCCCcCCCCeEEEEE-E-c--ccchhhh-----hHHHHHHHHHhhhcccceeeEEeee
Confidence 32222 1345799999996 1 1 1111222 34789999999996554 4555443
No 27
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.69 E-value=2e-16 Score=170.42 Aligned_cols=155 Identities=19% Similarity=0.286 Sum_probs=119.7
Q ss_pred cCHHHHHHHHHHchhhcCCC-----ceEEEEeeC----CeeEEEEEECCCCCCcccHHhhhhhc-ccCCccccccccccc
Q 010846 40 QRPVSAVKELVENSLDADAT-----SINVVVKDG----GLKLIQVSDDGHGIRYEDLPILCERH-TTSKLSKYEDLQSIK 109 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~At-----~I~I~i~~~----g~~~i~V~DNG~GI~~~dl~~~~~r~-~TSK~~~~~dl~~~~ 109 (499)
..+.++|.|||+||+||+++ .|.|.+..+ +...|+|.|||+||++++++.++.+| +|+|.. ...
T Consensus 30 ~~L~qvl~NLV~NAida~~~gg~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~------~~~ 103 (530)
T 2zbk_B 30 RALYQTVRELIENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV------NRQ 103 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCCC------CSC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCcc------ccc
Confidence 35789999999999999988 899998753 46679999999999999999999998 778763 235
Q ss_pred ccCccchHHHhhhhhce------EEEEEEEcCCccEEEEEE--E----cCeeeccccccc---CCCceEEEEEeeechhh
Q 010846 110 SMGFRGEALASMTYVGH------VTVTTITKGHLHGYRVSY--R----DGVMESEPKACA---AVKGTQIMVENLFYNMI 174 (499)
Q Consensus 110 t~GfrGeaLaSis~vs~------l~I~Sr~~~~~~~~~~~~--~----~g~~~~~~~~~~---~~~GTtV~v~~LF~n~P 174 (499)
+.|++|.||+.+..+++ ++|.|+..+...++.+.+ . .|... ...+.. ..+||+|+|. |+.+
T Consensus 104 ~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~-~~~~~~~~~~~~GT~V~v~-l~~~-- 179 (530)
T 2zbk_B 104 TRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIV-ERGSVENTRGFHGTSVAIS-IPGD-- 179 (530)
T ss_dssp CSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEE-EEEEEECCSSCCEEEEEEE-EECC--
T ss_pred CCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccc-cccccCCCCCCCCcEEEEE-eccc--
Confidence 78999999999887766 999999876544555443 2 23332 222322 5789999998 3332
Q ss_pred hhhhhccCCchhH-HHHHHHHHHHHhhCCCeEEEEEECCc
Q 010846 175 ARRKTLQNSSDDY-TKIVDLLSRMAIHHTNVSFSCRKHGA 213 (499)
Q Consensus 175 vRrk~lk~~~~e~-~~I~~~v~~yAl~~p~v~f~l~~~g~ 213 (499)
..++ .+|.+++++||+.+|++.|.+...+.
T Consensus 180 ---------~~e~~~~i~~~l~~~Al~~p~v~~~l~~~~~ 210 (530)
T 2zbk_B 180 ---------WPKAKSRIYEYIKRTYIITPYAEFIFKDPEG 210 (530)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHCTTCCEEEECTTS
T ss_pred ---------hhhHHHHHHHHHHHHHHHCCCcEEEEEECCC
Confidence 2233 78999999999999999999997654
No 28
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=99.63 E-value=1.5e-15 Score=158.77 Aligned_cols=179 Identities=13% Similarity=0.105 Sum_probs=135.4
Q ss_pred cccccChhHHHHhcCCccccC----------------------------HHHHHHHHHHchhhcC-----CCceEEEEee
Q 010846 21 KIHRLEESVVNRIAAGEVIQR----------------------------PVSAVKELVENSLDAD-----ATSINVVVKD 67 (499)
Q Consensus 21 ~I~~L~~~v~~~i~ag~vi~~----------------------------~~~~vkELieNSlDA~-----At~I~I~i~~ 67 (499)
.|+.|..--.-|.+.|.+|.+ +..+++|+|+||+|+. |+.|.|.|+.
T Consensus 16 ~~~~L~glE~VrkRPgMYIGst~~~~~~~~v~e~~~~~~~~~~v~~~~GL~~lv~EivdNaiDe~~~~g~~~~I~V~i~~ 95 (418)
T 1pvg_A 16 KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHA 95 (418)
T ss_dssp HSEECCHHHHHHHCCHHHHCCSSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEET
T ss_pred heeecchhHHHhhCCCceEcccCCCcceeeeeeccccccccccccccchHHHHHHHHHhCHHHHHHhcCCCCEEEEEEEC
Confidence 688999888888888888843 4669999999999976 8999999997
Q ss_pred CCeeEEEEEECCCCCCcccHH---------hhhhhcccCCcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCc
Q 010846 68 GGLKLIQVSDDGHGIRYEDLP---------ILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHL 137 (499)
Q Consensus 68 ~g~~~i~V~DNG~GI~~~dl~---------~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~ 137 (499)
+| ..|+|.|||+|||.+..+ .++..|+++|+.+ -....+.|.+|.+++....+| +++|+++...+.
T Consensus 96 d~-~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaGgKfd~---~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdG 171 (418)
T 1pvg_A 96 EE-HTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD---DEKKVTGGRNGYGAKLCNIFSTEFILETADLNVG 171 (418)
T ss_dssp TT-TEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEESCCCT---TSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTT
T ss_pred CC-CEEEEEECCCcccCcccccCCcccceEEEEEEecccccCC---CceeccCCccceeeeeeeeccceEEEEEEECCCC
Confidence 64 259999999999998744 2467799999853 223468899999999999999 699999973233
Q ss_pred cEEEEEEEcCe-eeccc--cccc-CCCceEEEEEeeechhhhhhhhccCCchhHHH---HHHHHHHHHhhCCCeEEEEEE
Q 010846 138 HGYRVSYRDGV-MESEP--KACA-AVKGTQIMVENLFYNMIARRKTLQNSSDDYTK---IVDLLSRMAIHHTNVSFSCRK 210 (499)
Q Consensus 138 ~~~~~~~~~g~-~~~~~--~~~~-~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~---I~~~v~~yAl~~p~v~f~l~~ 210 (499)
..|+..|.+|. ....| .++. ..+||+|++. |....+ ....-.+.. |.+.++.+|..+|++.|.|.+
T Consensus 172 k~y~q~f~~G~~~~~~p~i~~~~~~~tGT~V~F~------PD~~iF-~~~~f~~d~l~~l~~RlrelA~Ln~Gl~I~l~d 244 (418)
T 1pvg_A 172 QKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF-GMKELDNDILGVMRRRVYDINGSVRDINVYLNG 244 (418)
T ss_dssp EEEEEEEETTTTEECCCEEEECCSSCCEEEEEEE------ECGGGG-TCSSCCHHHHHHHHHHHHHHHHHSTTCEEEETT
T ss_pred cEEEEEEEcCCCccCCCeecccCCCCCceEEEEE------EChHHc-CCcccCHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 46999999873 22222 1222 4689999986 655443 333333444 678899999999999999864
No 29
>3rbn_A DNA mismatch repair protein MLH1; structural genomics, structural genomics consortium, SGC, DN mismatch repair, endonucleases, protein binding; HET: DNA; 2.16A {Homo sapiens}
Probab=99.60 E-value=2e-16 Score=155.62 Aligned_cols=60 Identities=32% Similarity=0.541 Sum_probs=56.7
Q ss_pred cccccccccHHHHHHHHHHhCCcchHhhccCCeEEEEEcCceeEEEeCCcEEEEeccCCC
Q 010846 440 LNETADLTSIQELIDDVDRNCHSGLLDIVRHCSFIGMADDVYALLQHNTHMYLANVVSLS 499 (499)
Q Consensus 440 ~~~~~~l~Si~~L~~~v~~~~~~~l~~~~~~~~~VG~vd~~~~liQ~~t~Lylvd~~~~~ 499 (499)
.+++|+||||++||++|++++|.+|+++|++|+||||||++++||||+|+|||||++.||
T Consensus 30 ~~r~~~LtSV~~Lr~ev~~~~h~~Ltei~~~~tfVG~VD~~~aLiQ~~tkLYLvd~~~l~ 89 (284)
T 3rbn_A 30 RRRIINLTSVLSLQEEINEQGHEVLREMLHNHSFVGCVNPQWALAQHQTKLYLLNTTKLS 89 (284)
T ss_dssp CCSCCCCHHHHHHHHHHHHHBCHHHHHHHHTCEEEEESSSSEEEEEETTEEEEEEHHHHH
T ss_pred ceeEEechhHHHHHHHHHHhcCHHHHHHHHhCeEEEEECCCeeEEEeCCeEEEecHHHHH
Confidence 344799999999999999999999999999999999999999999999999999998764
No 30
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=99.60 E-value=4.1e-15 Score=146.89 Aligned_cols=170 Identities=19% Similarity=0.260 Sum_probs=120.2
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCC------------------CceEEEEeeCCeeEEEEEECCCCCC
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~A------------------t~I~I~i~~~g~~~i~V~DNG~GI~ 83 (499)
|++|-+-+++.+-++ +..+|+|||.||.||.+ ..|.|.++.++ ..|.|.|||.||+
T Consensus 32 i~~Ll~ll~~~lYsn-----~~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~-~tLtI~DNGiGMt 105 (281)
T 3peh_A 32 VTRLMDIIVNSLYTQ-----KEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEK-NILSITDTGIGMT 105 (281)
T ss_dssp HHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhccCC-----hHHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCC-cEEEEEeCCCCCC
Confidence 677777777776665 47899999999999975 35666665544 4699999999999
Q ss_pred cccHHhhhhhcccCCccccc-cc----ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCe-eeccccc-
Q 010846 84 YEDLPILCERHTTSKLSKYE-DL----QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGV-MESEPKA- 155 (499)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~~-dl----~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~-~~~~~~~- 155 (499)
++||.......++|.-..|- .+ ......|.+|.+++|...|| +|+|.||..+. .+|.+...+|. ....+.+
T Consensus 106 ~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~-~~~~Wes~g~g~fti~~~~~ 184 (281)
T 3peh_A 106 KVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDD-EQYIWESTADAKFTIYKDPR 184 (281)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTS-CCEEEEEETTSCEEEEECTT
T ss_pred HHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCC-CEEEEEECCCccEEEEEcCC
Confidence 99998766666666432221 11 23467899999999988887 59999999875 58888776543 2222221
Q ss_pred -ccCCCceEEEEEeeechhhhhhhhccCCch---hHHHHHHHHHHHHhhCC-CeEEEEEE
Q 010846 156 -CAAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSFSCRK 210 (499)
Q Consensus 156 -~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~p-~v~f~l~~ 210 (499)
....+||+|++. ++.... +-.+|.++|.+|+-+-| .|.+...+
T Consensus 185 ~~~~~~GT~I~L~------------Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k 232 (281)
T 3peh_A 185 GATLKRGTRISLH------------LKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHEN 232 (281)
T ss_dssp CSTTSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEE
T ss_pred CCCCCCCeEEEEE------------ECCchhhhcCHHHHHHHHHHhhccCCcceEEeeee
Confidence 245799999997 222222 34789999999996654 45555544
No 31
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.1e-15 Score=162.19 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=116.0
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCC------------------CceEEEEeeCCeeEEEEEECCCCCC
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADA------------------TSINVVVKDGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~A------------------t~I~I~i~~~g~~~i~V~DNG~GI~ 83 (499)
|++|=+-+++. ...++..+|+|||+||+||++ ..|.|.++.++ ..|+|.|||+||+
T Consensus 12 ~~~Ll~li~~s-----LYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~-~~I~I~DnGiGMt 85 (677)
T 2cg9_A 12 ITQLMSLIINT-----VYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQ-KVLEIRDSGIGMT 85 (677)
T ss_dssp HHHHHHHHHHS-----CCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGG-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHh-----CCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCC-CEEEEEECCCCCC
Confidence 44444444443 344567899999999999984 35777776665 4699999999999
Q ss_pred cccHHhhhhhcccC-------CcccccccccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcCee-ecccc
Q 010846 84 YEDLPILCERHTTS-------KLSKYEDLQSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDGVM-ESEPK 154 (499)
Q Consensus 84 ~~dl~~~~~r~~TS-------K~~~~~dl~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~-~~~~~ 154 (499)
++|+.....++++| |+....| ....|.+|.|++|.-.++ +|+|+||+.++ .+|.+...+|.. ...+.
T Consensus 86 ~edl~~~l~tIA~Sgt~~f~~kl~~~~d---~~~IGqFGvGFySaf~vadkV~V~Sk~~~~-~~~~W~s~g~~~~ti~~~ 161 (677)
T 2cg9_A 86 KAELINNLGTIAKSGTKAFMEALSAGAD---VSMIGQFGVGFYSLFLVADRVQVISKSNDD-EQYIWESNAGGSFTVTLD 161 (677)
T ss_dssp HHHHHGGGSSSSSCTTHHHHSCCCSSCC---CCCCCCTTCTTGGGGGTEEEEEEEEECTTS-CEEEEEECSSSEEEEEEC
T ss_pred HHHHHHHHHhHhccccHHHHHhhhcccc---hhhcCCCCchhHHHhhcCcEEEEEEccCCC-ceEEEEEcCCceEEEeec
Confidence 99999999899988 5543333 356788888876665555 79999999875 488887766542 22221
Q ss_pred --cccCCCceEEEEEeeechhhhhhhhccCCch---hHHHHHHHHHHHHhhCC-CeEE
Q 010846 155 --ACAAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT-NVSF 206 (499)
Q Consensus 155 --~~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~p-~v~f 206 (499)
.....+||+|++. ++.... +..+|.+++.+||-+-+ .|.+
T Consensus 162 ~~~~~~~~GT~I~L~------------Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l 207 (677)
T 2cg9_A 162 EVNERIGRGTILRLF------------LKDDQLEYLEEKRIKEVIKRHSEFVAYPIQL 207 (677)
T ss_dssp CSSCCCSSEEEEEEE------------ECTTGGGGGCHHHHHHHHHHHSTTCSSCEEE
T ss_pred CCCCCCCCCeEEEEE------------EcchhhccccHHHHHHHHHHHHhhCCCCeEE
Confidence 1355799999997 332232 35789999999996654 3444
No 32
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=99.54 E-value=7.7e-15 Score=142.09 Aligned_cols=162 Identities=19% Similarity=0.268 Sum_probs=109.4
Q ss_pred ccccChhHHHHhcCCccccCHHHHHHHHHHchhhcCCC------------------ceEEEEeeCCeeEEEEEECCCCCC
Q 010846 22 IHRLEESVVNRIAAGEVIQRPVSAVKELVENSLDADAT------------------SINVVVKDGGLKLIQVSDDGHGIR 83 (499)
Q Consensus 22 I~~L~~~v~~~i~ag~vi~~~~~~vkELieNSlDA~At------------------~I~I~i~~~g~~~i~V~DNG~GI~ 83 (499)
|++|-+-+++.+ ..++..+|+|||.||.||.+. .|.|..+.++ ..|.|.|||.||+
T Consensus 25 ~~~ll~ll~~~l-----Ys~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~-~~L~I~DnGiGMt 98 (239)
T 3nmq_A 25 IAQLMSLIINTF-----YSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQE-RTLTLVDTGIGMT 98 (239)
T ss_dssp HHHHHHHHHHSC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTT-TEEEEEECSCCCC
T ss_pred HHHHHHHHHHhc-----cCCcHHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCc-cEEEEEeCCCCCC
Confidence 455555555444 345688999999999999753 4566555443 4699999999999
Q ss_pred cccHHhhhhhcccCCcccc-ccc---ccccccCccchHHHhhhhhc-eEEEEEEEcCCccEEEEEEEcC-eeecccc-cc
Q 010846 84 YEDLPILCERHTTSKLSKY-EDL---QSIKSMGFRGEALASMTYVG-HVTVTTITKGHLHGYRVSYRDG-VMESEPK-AC 156 (499)
Q Consensus 84 ~~dl~~~~~r~~TSK~~~~-~dl---~~~~t~GfrGeaLaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g-~~~~~~~-~~ 156 (499)
++|+.......+.|.-..| +.+ ......|..|.+++|...|| +|+|.||..++ .+|.+...+| .....+. ..
T Consensus 99 ~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~-~~~~W~s~~~g~fti~~~~~~ 177 (239)
T 3nmq_A 99 KADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDD-EQYAWESSAGGSFTVRADHGE 177 (239)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTS-CCEEEEECSTTEEEEEECCSS
T ss_pred HHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCC-ceeEEEECCCCcEEEEecCCC
Confidence 9999665545554422222 111 23568899999999999998 59999999754 4777766543 3322221 12
Q ss_pred cCCCceEEEEEeeechhhhhhhhccCCch---hHHHHHHHHHHHHhhCC
Q 010846 157 AAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHHT 202 (499)
Q Consensus 157 ~~~~GTtV~v~~LF~n~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~p 202 (499)
...+||+|++. ++.... +-.+|.+++++|+-+-|
T Consensus 178 ~~~~GT~I~L~------------lk~d~~e~l~~~~i~~lv~kys~fi~ 214 (239)
T 3nmq_A 178 PIGRGTKVILH------------LKEDQTEYLEERRVKEVVKKHSQFIG 214 (239)
T ss_dssp CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCTTCS
T ss_pred cCCCCCEEEEE------------ECCChHHhcCHHHHHHHHHHHHhccC
Confidence 34789999997 222222 34689999999996544
No 33
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=99.24 E-value=1.6e-11 Score=119.06 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=85.9
Q ss_pred ceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccc-ccc----ccccccCccchHHHhhhhhc-eEEEEEEE
Q 010846 60 SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKY-EDL----QSIKSMGFRGEALASMTYVG-HVTVTTIT 133 (499)
Q Consensus 60 ~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~-~dl----~~~~t~GfrGeaLaSis~vs-~l~I~Sr~ 133 (499)
.|.|.++.++. .|+|.|||.||+++||.......+.|....| +.+ ......|..|.+++|...|| +|+|.||
T Consensus 120 ~I~I~~Dk~~~-tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmVAdkV~V~Sk- 197 (272)
T 3ied_A 120 IIKIKPDKEKK-TLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLVSNRVEVYTK- 197 (272)
T ss_dssp CEEEEEETTTT-EEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGTEEEEEEEEE-
T ss_pred EEEEEEeCCCC-EEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeeccCCEEEEEEc-
Confidence 46666665543 6999999999999999987767666633222 111 22456899999999988887 6999999
Q ss_pred cCCccEEEEEEEc-Ceeeccccc-------ccCCCceEEEEEeeechhhhhhhhccCCch---hHHHHHHHHHHHHhhC
Q 010846 134 KGHLHGYRVSYRD-GVMESEPKA-------CAAVKGTQIMVENLFYNMIARRKTLQNSSD---DYTKIVDLLSRMAIHH 201 (499)
Q Consensus 134 ~~~~~~~~~~~~~-g~~~~~~~~-------~~~~~GTtV~v~~LF~n~PvRrk~lk~~~~---e~~~I~~~v~~yAl~~ 201 (499)
. +..+|++..++ |.....+.+ ....+||.|++. |+.... +-.+|.+++.+|+-+-
T Consensus 198 ~-dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~------------Lked~~e~le~~~ik~likkys~fi 263 (272)
T 3ied_A 198 K-EDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILH------------LKEECDEYLEDYKLKELIKKYSEFI 263 (272)
T ss_dssp S-SSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEE------------ECGGGGGGGSHHHHHHHHHHHCTTC
T ss_pred C-CCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEE------------ECCChHHhcCHHHHHHHHHHHHhCC
Confidence 4 44578887654 333222111 245789999997 222222 3468999999998543
No 34
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=99.10 E-value=6.3e-10 Score=129.16 Aligned_cols=181 Identities=16% Similarity=0.137 Sum_probs=122.7
Q ss_pred CCCccCCCchhhhcCCCCCccccccChhHHHHhcCCccccC----------------------------HHHHHHHHHHc
Q 010846 1 MDTEEAWTPEAEAAAVKEPPKIHRLEESVVNRIAAGEVIQR----------------------------PVSAVKELVEN 52 (499)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~I~~L~~~v~~~i~ag~vi~~----------------------------~~~~vkELieN 52 (499)
|++|+....+ .|++|..--.-|.+.|++|.+ +..++.|.|+|
T Consensus 1 Ms~~~~~~~~----------~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildN 70 (1177)
T 4gfh_A 1 MSTEPVSASD----------KYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVN 70 (1177)
T ss_dssp ------CHHH----------HSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCchhh----------cccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEC
Confidence 6666654433 699999999999999999875 57899999999
Q ss_pred hhh---cC--CCceEEEEe-eCCeeEEEEEECCCCCCccc--------HHhh-hhhcccCCcccccccccccccCccchH
Q 010846 53 SLD---AD--ATSINVVVK-DGGLKLIQVSDDGHGIRYED--------LPIL-CERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 53 SlD---A~--At~I~I~i~-~~g~~~i~V~DNG~GI~~~d--------l~~~-~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
|+| || ++.|.|.|+ ++| .|+|.|||.|||.+- ++.+ +.-|+.+|+.+ -....+-|.+|.+
T Consensus 71 siDea~ag~~~~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKFd~---~~ykvSGGLHGVG 145 (1177)
T 4gfh_A 71 AADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNYDD---DEKKVTGGRNGYG 145 (1177)
T ss_dssp HHHHHHHCTTCCEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCCCC---SSCCCCSCCSSCH
T ss_pred hHhHHhhCCCCCeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCcCC---CCCeEeccCCChh
Confidence 999 44 478999998 466 499999999999763 3344 46688888753 2234677999999
Q ss_pred HHhhhhhc-eEEEEEEEcCCccEEEEEEEcCeeeccc-c--cc-cCCCceEEEEEeeechhhhhhhhccCCchhHHHHHH
Q 010846 118 LASMTYVG-HVTVTTITKGHLHGYRVSYRDGVMESEP-K--AC-AAVKGTQIMVENLFYNMIARRKTLQNSSDDYTKIVD 192 (499)
Q Consensus 118 LaSis~vs-~l~I~Sr~~~~~~~~~~~~~~g~~~~~~-~--~~-~~~~GTtV~v~~LF~n~PvRrk~lk~~~~e~~~I~~ 192 (499)
.+....+| ++.+.+.......-|+..|.+|.....+ . .+ .+..||+|++. |.-..+ ....-.+..+..
T Consensus 146 ~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~~~~~tGT~V~F~------PD~~iF-~~~~~~~d~l~~ 218 (1177)
T 4gfh_A 146 AKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFK------PDLTRF-GMKELDNDILGV 218 (1177)
T ss_dssp HHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEECCSSCCCEEEEEE------ECHHHH-TCSSCCHHHHHH
T ss_pred hhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecCCCCCCceEEEEE------eCHHhc-CCcEeCHHHHHH
Confidence 77777888 5777776544344688999988653322 1 22 34689999986 543332 222223444555
Q ss_pred HHHHHHhhCCC
Q 010846 193 LLSRMAIHHTN 203 (499)
Q Consensus 193 ~v~~yAl~~p~ 203 (499)
+.++++..++.
T Consensus 219 ~~r~~~~l~~~ 229 (1177)
T 4gfh_A 219 MRRRVYDINGS 229 (1177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhcCC
Confidence 66666665543
No 35
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=98.29 E-value=3.4e-06 Score=74.27 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHchhhcCCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++.+||+||+.++...|.|.+.. ++.-.|.|.|||.||++++++.++.+|.+++-
T Consensus 44 ~l~~il~nLl~NAi~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~ 103 (152)
T 1id0_A 44 DFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDT 103 (152)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTC
T ss_pred HHHHHHHHHHHHHHHhCcCeEEEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccC
Confidence 367899999999999988888888864 44446999999999999999999999987764
No 36
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=98.24 E-value=3.6e-06 Score=75.16 Aligned_cols=59 Identities=25% Similarity=0.195 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHchhhcCCCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++.+||+||+.++...|.|.+.. ++.-.|.|.|||.||+.++++.++++|++++-
T Consensus 47 ~l~~il~nll~NAik~~~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~ 106 (161)
T 1bxd_A 47 SIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDS 106 (161)
T ss_dssp HHHHHHHHHHHHHHTTCCSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSC
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCC
Confidence 467899999999999998899998863 55557999999999999999999999988764
No 37
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=98.21 E-value=1.7e-06 Score=80.69 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHHHHHHHHchhhcCCC--ceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHHH
Q 010846 42 PVSAVKELVENSLDADAT--SINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEALA 119 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At--~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLa 119 (499)
+..++.+||.||+.+... .|.|.+...+ |.|.|||.||++++++.++++|.+++-.. -+-.|.+|+
T Consensus 118 l~~il~nLl~NAi~~~~~~~~i~i~~~~~~---i~V~D~G~Gi~~~~~~~if~~f~~~~~~~---------~~g~GlGL~ 185 (222)
T 3jz3_A 118 LSLLVRNLLDNAVRYSPQGSVVDVTLNADN---FIVRDNGPGVTPEALARIGERFYRPPGQT---------ATGSGLGLS 185 (222)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEEECSSE---EEEECSCC-----------------------------------CTHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEEEccCe---EEEEECCCCCCHHHHHHHHhhhccCCCCC---------CCcccccHH
Confidence 678999999999999744 4666665443 89999999999999999999998754221 122466776
Q ss_pred hhhhh
Q 010846 120 SMTYV 124 (499)
Q Consensus 120 Sis~v 124 (499)
-+..+
T Consensus 186 i~~~i 190 (222)
T 3jz3_A 186 IVQRI 190 (222)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 38
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=98.21 E-value=1e-05 Score=71.06 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=53.8
Q ss_pred cCHHHHHHHHHHchhhcC-----CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCc
Q 010846 40 QRPVSAVKELVENSLDAD-----ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGF 113 (499)
Q Consensus 40 ~~~~~~vkELieNSlDA~-----At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~Gf 113 (499)
..+..++.|||+||+.++ ...|.|.+.. ++.-.|.|.|||.||+ +++.++.++.++|-. .+-
T Consensus 38 ~~l~~il~~l~~Nai~h~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~~----------~~~ 105 (145)
T 1th8_A 38 TEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPE----------LER 105 (145)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCCC----------CCC
Confidence 357889999999999987 3678888753 5555799999999999 889999998887641 123
Q ss_pred cchHHHhhhhhce
Q 010846 114 RGEALASMTYVGH 126 (499)
Q Consensus 114 rGeaLaSis~vs~ 126 (499)
.|.+|+-+..+..
T Consensus 106 ~GlGL~iv~~~~~ 118 (145)
T 1th8_A 106 SGMGFTIMENFMD 118 (145)
T ss_dssp CSCHHHHHHHHSS
T ss_pred CcchHHHHHHHHh
Confidence 5778877766653
No 39
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=98.17 E-value=9.8e-06 Score=77.96 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHchhhcCCC-----ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADAT-----SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At-----~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++..||.||+++... .|.|.+.. ++.-.|.|.|||.||++++++.++++|++.+-
T Consensus 138 ~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~ 202 (258)
T 2c2a_A 138 RIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDS 202 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC-
T ss_pred HHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCC
Confidence 3678999999999998642 37777653 44556999999999999999999999988753
No 40
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=98.16 E-value=5.1e-06 Score=76.28 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHchhhcC--------------CCceEEEEee-CCeeEEEEEECCCCCCcccH------------------
Q 010846 41 RPVSAVKELVENSLDAD--------------ATSINVVVKD-GGLKLIQVSDDGHGIRYEDL------------------ 87 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~--------------At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl------------------ 87 (499)
....++.+||+||+.++ ...|.|.+.. ++.-.|.|.|||.||+++++
T Consensus 47 ~l~~il~nLl~NAik~~~~~~~~~~~~~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~ 126 (189)
T 1i58_A 47 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHTSCSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhccc
Confidence 34556999999999985 4578888753 55557999999999999987
Q ss_pred ------HhhhhhcccCCcccccccccccccCccchHHHhhhhh
Q 010846 88 ------PILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYV 124 (499)
Q Consensus 88 ------~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~v 124 (499)
+.++.+|.++|-.. ...+-.|.+|+-+..+
T Consensus 127 ~~~~~~~~if~~~~~~~~~~-------~~~~g~GlGL~iv~~~ 162 (189)
T 1i58_A 127 SDQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNV 162 (189)
T ss_dssp CHHHHHGGGGSTTCSHHHHH-------HGGGTCCCHHHHHHHH
T ss_pred chhhhHHHhcCCcccccccC-------CCCCCCccCHHHHHHH
Confidence 77788877765321 1123357777666544
No 41
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=98.13 E-value=4e-06 Score=74.10 Aligned_cols=72 Identities=21% Similarity=0.166 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHchhhcC---CCceEEEEee-CC----------eeEEEEEECCCCCCcccHHhhhhhcccCCcccccccc
Q 010846 41 RPVSAVKELVENSLDAD---ATSINVVVKD-GG----------LKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQ 106 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~---At~I~I~i~~-~g----------~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~ 106 (499)
.+..++.+||.||+.+. ...|.|.+.. ++ .-.|.|.|||.||++++++.++++|.++|-
T Consensus 48 ~l~~il~nLl~NAik~~~~~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------- 120 (160)
T 1r62_A 48 QIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------- 120 (160)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC-------
Confidence 36788999999999975 5678887753 22 346999999999999999999999988753
Q ss_pred cccccCccchHHHhhhhh
Q 010846 107 SIKSMGFRGEALASMTYV 124 (499)
Q Consensus 107 ~~~t~GfrGeaLaSis~v 124 (499)
+-.|.+|+.+..+
T Consensus 121 -----~g~GlGL~i~~~~ 133 (160)
T 1r62_A 121 -----GGTGLGLSIARNL 133 (160)
T ss_dssp --------CHHHHHHHHH
T ss_pred -----CCCccCHHHHHHH
Confidence 1246777665544
No 42
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=98.10 E-value=1.5e-05 Score=75.29 Aligned_cols=73 Identities=25% Similarity=0.312 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHchhhcC--CCceEEEEe-eCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchH
Q 010846 41 RPVSAVKELVENSLDAD--ATSINVVVK-DGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEA 117 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~--At~I~I~i~-~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGea 117 (499)
.+..++.+||.||+.+. ...|.|.+. .++.-.|.|.|||.||++++++.++.+|.++|-. +-.|.+
T Consensus 123 ~l~~il~nLl~NA~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~~-----------~g~GlG 191 (244)
T 3d36_A 123 KFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKGV-----------KGTGLG 191 (244)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSGG-----------GCCSCH
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCCC-----------CCcchh
Confidence 36789999999999996 567777775 3555579999999999999999999999987621 123667
Q ss_pred HHhhhhh
Q 010846 118 LASMTYV 124 (499)
Q Consensus 118 LaSis~v 124 (499)
|+-+..+
T Consensus 192 L~i~~~i 198 (244)
T 3d36_A 192 MMVVYRI 198 (244)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 43
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=98.09 E-value=1.6e-05 Score=69.95 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHchhhcCC-CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccC
Q 010846 41 RPVSAVKELVENSLDADA-TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTS 97 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A-t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TS 97 (499)
.+..++.+||+||+.++. ..|.|.+.. ++.-.|.|.|||.||++++++.++++|.++
T Consensus 46 ~l~~il~nLl~NA~~~~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~ 104 (150)
T 1ysr_A 46 GLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRG 104 (150)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccC
Confidence 367889999999999864 467777753 445579999999999999999999999865
No 44
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=98.08 E-value=7.9e-06 Score=70.43 Aligned_cols=47 Identities=28% Similarity=0.203 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHchhhcC-CCceEEEEee-CCeeEEEEEECCCCCCcccH
Q 010846 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYEDL 87 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~-At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl 87 (499)
.+..++.||++||+.++ ++.|.|.+.. ++.-.|.|.|||.||+++++
T Consensus 40 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 40 ILSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 34678999999999964 7889888863 45557999999999998765
No 45
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=98.05 E-value=5.7e-06 Score=72.53 Aligned_cols=58 Identities=22% Similarity=0.204 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHchhhcC--CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCC
Q 010846 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSK 98 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~--At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK 98 (499)
.+..++.+||.||+.+. ...|.|.+.. ++.-.|.|.|||.||++++++.++++|.+++
T Consensus 47 ~l~~il~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~ 107 (152)
T 3a0y_A 47 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 107 (152)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCC
Confidence 46788999999999985 5678888764 4455799999999999999999999998875
No 46
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=98.05 E-value=1.8e-05 Score=76.18 Aligned_cols=71 Identities=23% Similarity=0.320 Sum_probs=56.3
Q ss_pred HHHHHHHHHHchhhcCC--CceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccchHH
Q 010846 42 PVSAVKELVENSLDADA--TSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRGEAL 118 (499)
Q Consensus 42 ~~~~vkELieNSlDA~A--t~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaL 118 (499)
+..++.+||.||+++.. ..|.|.+.. ++.-.|.|.|||.||++++++.++.+|.++|- +-.|.+|
T Consensus 156 l~~il~nLl~NA~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------------~g~GlGL 223 (268)
T 4ew8_A 156 LAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------------GGPGLGL 223 (268)
T ss_dssp HHHHHHHHHHHHHHHSCTTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------------CCCTTHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------------CCCcccH
Confidence 67899999999999865 578888764 44557999999999999999999999987653 2247777
Q ss_pred Hhhhhh
Q 010846 119 ASMTYV 124 (499)
Q Consensus 119 aSis~v 124 (499)
+.+..+
T Consensus 224 ~i~~~~ 229 (268)
T 4ew8_A 224 ALVKAL 229 (268)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 47
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=98.03 E-value=1.2e-05 Score=82.97 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHchhhcCCC----------ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADAT----------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At----------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++.+||.||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.++.+|++++-
T Consensus 238 ~L~~il~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 307 (388)
T 1gkz_A 238 PLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE 307 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC-
T ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCC
Confidence 4678999999999998532 79998865 44557999999999999999999999998875
No 48
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=97.99 E-value=1e-05 Score=84.06 Aligned_cols=60 Identities=22% Similarity=0.219 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHchhhcCCC---------ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At---------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
.+..++.+||+||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.++++|++++-.
T Consensus 243 ~L~~il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~ 312 (407)
T 2q8g_A 243 HLYHMVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 312 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCC
Confidence 4678899999999998532 68888865 444579999999999999999999999987643
No 49
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=97.99 E-value=1.2e-05 Score=83.18 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHchhhcCCC---------ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcc
Q 010846 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLS 100 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At---------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~ 100 (499)
.+..++.+||.||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.++++|++++-.
T Consensus 230 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~ 299 (394)
T 2e0a_A 230 HLHHMLFELFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPT 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCC
Confidence 3678999999999998532 49998865 445579999999999999999999999988643
No 50
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=97.95 E-value=2.5e-05 Score=70.83 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHchhhcCC--CceEEEE--ee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccccccccccCccc
Q 010846 41 RPVSAVKELVENSLDADA--TSINVVV--KD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYEDLQSIKSMGFRG 115 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A--t~I~I~i--~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~dl~~~~t~GfrG 115 (499)
.+..++.+||.||+++.. ..|.|.+ .. ++.-.|.|.|||.||++++++.++.+|.+.+.... ...+-.|
T Consensus 43 ~l~~il~nLl~NAi~~~~~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~~~~------~~~~g~G 116 (177)
T 3sl2_A 43 KITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDKART------RKLGGTG 116 (177)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCCCCC------CCCCCCC
Confidence 367899999999999863 4556655 42 44556999999999999999999999987643211 1223457
Q ss_pred hHHHhhhhh
Q 010846 116 EALASMTYV 124 (499)
Q Consensus 116 eaLaSis~v 124 (499)
.+|+.+..+
T Consensus 117 lGL~iv~~~ 125 (177)
T 3sl2_A 117 LGLAIAKEM 125 (177)
T ss_dssp CHHHHHHHH
T ss_pred cCHHHHHHH
Confidence 777665543
No 51
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=97.94 E-value=1.5e-05 Score=82.21 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHchhhcC--------------CCceEEEEe-eCCeeEEEEEECCCCCCcccH------------------
Q 010846 41 RPVSAVKELVENSLDAD--------------ATSINVVVK-DGGLKLIQVSDDGHGIRYEDL------------------ 87 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~--------------At~I~I~i~-~~g~~~i~V~DNG~GI~~~dl------------------ 87 (499)
....++.+||.||+|+| ...|.|.+. .++.-.|+|.|||.||+++.+
T Consensus 106 ~l~~~l~nLl~NAi~h~~e~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~ 185 (379)
T 1b3q_A 106 EIGEPLLHLLRNAIDHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATL 185 (379)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcC
Confidence 34566999999999997 356888775 356667999999999999987
Q ss_pred ------HhhhhhcccCCcccccccccccccCccchHHHhhhhh-----ceEEEEEEE
Q 010846 88 ------PILCERHTTSKLSKYEDLQSIKSMGFRGEALASMTYV-----GHVTVTTIT 133 (499)
Q Consensus 88 ------~~~~~r~~TSK~~~~~dl~~~~t~GfrGeaLaSis~v-----s~l~I~Sr~ 133 (499)
+.+|++|+++|-.. ...+-+|.+|+-...+ ++++|.|..
T Consensus 186 ~~~~~~~~iF~p~fst~~~~-------~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~ 235 (379)
T 1b3q_A 186 SDQEILNFLFVPGFSTKEKV-------SEVSGRGVGMDVVKNVVESLNGSMGIESEK 235 (379)
T ss_dssp CTHHHHSGGGSTTCC------------------CCCSHHHHHHHHHTTCEEEEEEET
T ss_pred CHHHHHHHhcCCCCccCCcc-------CCCCCccccHHHHHHHHHHCCCEEEEEEcC
Confidence 67888877665321 1234567777554332 468887764
No 52
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=97.92 E-value=1.3e-05 Score=83.80 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=47.5
Q ss_pred HHHHHHHHHHchhhcCCC----------ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 42 PVSAVKELVENSLDADAT----------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 42 ~~~~vkELieNSlDA~At----------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
+..++.+||.||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.++++|++.+-
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~ 322 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAP 322 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC---
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCC
Confidence 678999999999998643 68888865 34457999999999999999999999998764
No 53
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.88 E-value=1.1e-05 Score=80.68 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHchhhcC--CCceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDAD--ATSINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~--At~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++.+||.||+++. +..|.|.+.. ++.-.|.|.|||.||++++++.++++|.|+|.
T Consensus 244 ~l~~vl~nLl~NA~k~~~~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~ 305 (349)
T 3a0r_A 244 RIKQVLINLVQNAIEATGENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT 305 (349)
T ss_dssp HHHHHHHHHHTHHHHTTCTTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC--
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCC
Confidence 46789999999999986 5688888864 55557999999999999999999999998873
No 54
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.86 E-value=2e-05 Score=81.54 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHchhhcCCC---------ceEEEEee-CCeeEEEEEECCCCCCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADAT---------SINVVVKD-GGLKLIQVSDDGHGIRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~At---------~I~I~i~~-~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~ 99 (499)
.+..++.+||.||+.|... .|.|.+.. ++.-.|.|.|||.||++++++.++.+|++++-
T Consensus 231 ~L~~il~NLl~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~ 299 (394)
T 2btz_A 231 HLYHMLFELFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAP 299 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 3678999999999998532 48998865 34457999999999999999999999998764
No 55
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=97.85 E-value=8.1e-05 Score=63.54 Aligned_cols=45 Identities=31% Similarity=0.431 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHchhhcC-CCceEEEEee-CCeeEEEEEECCCCCCccc
Q 010846 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~-At~I~I~i~~-~g~~~i~V~DNG~GI~~~d 86 (499)
....++.|||.||+.++ +..|.|.+.. ++ -.|.|.|||.||++++
T Consensus 43 ~l~~il~nll~NA~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 43 QAEAVVREAVSNAVRHAAASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHHHHHCCCCSSCCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 46788999999999986 7889988864 34 5699999999999765
No 56
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=97.82 E-value=3.6e-05 Score=71.84 Aligned_cols=46 Identities=28% Similarity=0.192 Sum_probs=34.9
Q ss_pred HHHHHHHHHHchhhc-CCCceEEEEe-eCCeeEEEEEECCCCCCcccH
Q 010846 42 PVSAVKELVENSLDA-DATSINVVVK-DGGLKLIQVSDDGHGIRYEDL 87 (499)
Q Consensus 42 ~~~~vkELieNSlDA-~At~I~I~i~-~~g~~~i~V~DNG~GI~~~dl 87 (499)
+..++.||+.||+.+ +++.|.|.+. .++.-.|.|.|||.||+++++
T Consensus 131 l~~il~nll~Na~k~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 131 LSMCLKEAVTNVVKHSQAKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHHHHTCCSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 457899999999996 4678888885 355557999999999998765
No 57
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.41 E-value=0.00027 Score=59.84 Aligned_cols=45 Identities=29% Similarity=0.371 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHchhhcC-CCceEEEEee-CCeeEEEEEECCCCCCccc
Q 010846 41 RPVSAVKELVENSLDAD-ATSINVVVKD-GGLKLIQVSDDGHGIRYED 86 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~-At~I~I~i~~-~g~~~i~V~DNG~GI~~~d 86 (499)
....++.||+.||+.++ ++.|.|.+.. ++ -.|.|.|||.||++++
T Consensus 39 ~l~~il~nll~Na~k~~~~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 39 HAEAVLREAVSNAVRHANATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 45689999999999975 5688888753 33 5699999999999865
No 58
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=97.13 E-value=0.002 Score=61.92 Aligned_cols=59 Identities=20% Similarity=0.066 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHchhhcCC--CceEEEEe-eCCeeEEEEEECCCC--CCcccHHhhhhhcccCCc
Q 010846 41 RPVSAVKELVENSLDADA--TSINVVVK-DGGLKLIQVSDDGHG--IRYEDLPILCERHTTSKL 99 (499)
Q Consensus 41 ~~~~~vkELieNSlDA~A--t~I~I~i~-~~g~~~i~V~DNG~G--I~~~dl~~~~~r~~TSK~ 99 (499)
...+++-.|+.||++|.. ..|.|.+. .++...|.|.|+|.| |+++.++.++.++.++|.
T Consensus 146 ~~~qvl~NLl~NA~~a~~~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~~ 209 (247)
T 4fpp_A 146 PSSRAVLNIAQIAASALPAGGVATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEGL 209 (247)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCCC
Confidence 356789999999999854 46888875 355667999999988 556666777777766653
No 59
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=94.81 E-value=0.055 Score=55.78 Aligned_cols=48 Identities=27% Similarity=0.248 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHHchhhcC-----CCceEEEEee--CCeeEEEEEECCCCCCcc
Q 010846 38 VIQRPVSAVKELVENSLDAD-----ATSINVVVKD--GGLKLIQVSDDGHGIRYE 85 (499)
Q Consensus 38 vi~~~~~~vkELieNSlDA~-----At~I~I~i~~--~g~~~i~V~DNG~GI~~~ 85 (499)
.+....-+|.||+.||+.++ ...|.|.+.. ++.-.|.|.|+|.|+++.
T Consensus 294 ~~~~~~l~v~El~~Nav~Ha~~~~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 294 DIADIVHAISEFVENAVEHGYATDVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHBCCSCCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 34567889999999999987 6788888864 345579999999999864
No 60
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=93.73 E-value=0.055 Score=50.29 Aligned_cols=49 Identities=6% Similarity=0.042 Sum_probs=32.2
Q ss_pred HHHHHHchhhcC--------CCceEEEEeeC---CeeEEEEEECCCCCCcccHHhhhhhc
Q 010846 46 VKELVENSLDAD--------ATSINVVVKDG---GLKLIQVSDDGHGIRYEDLPILCERH 94 (499)
Q Consensus 46 vkELieNSlDA~--------At~I~I~i~~~---g~~~i~V~DNG~GI~~~dl~~~~~r~ 94 (499)
+..|++|+++|- -..|.|.+... +.-.|.|.|+|+||+++.+..+++..
T Consensus 110 lgnLi~na~~Ai~~~~~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~ 169 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQAVSRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNG 169 (192)
T ss_dssp HHHHHHHHHHHHHHHBCTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC------
T ss_pred HHHHHHHHHHHHHhhhccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCC
Confidence 355666666652 45788888764 44579999999999999887777643
No 61
>3hqc_A Tensin-like C1 domain-containing phosphatase; TENC1, phosphotyrosine binding domain, PTB, TNS2, KIAA1075, struct genomics, PSI-2; 1.80A {Homo sapiens} SCOP: b.55.1.2 PDB: 2loz_A 2dkq_A
Probab=37.45 E-value=12 Score=33.30 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHchhhcCCCceEEEEeeCCeeEEEEEECCCCCCcccHHhhhhhcccCCcccccc
Q 010846 43 VSAVKELVENSLDADATSINVVVKDGGLKLIQVSDDGHGIRYEDLPILCERHTTSKLSKYED 104 (499)
Q Consensus 43 ~~~vkELieNSlDA~At~I~I~i~~~g~~~i~V~DNG~GI~~~dl~~~~~r~~TSK~~~~~d 104 (499)
..||++++.-+--.-++.|.+.|...| |++.||-. .+.++||+.-.--+|..
T Consensus 36 ~kAv~~~l~~~~~~~~t~V~fkVS~qG---ItLtD~~r-------K~FfrrHypl~~IsFC~ 87 (157)
T 3hqc_A 36 ARASSAALSCSPRPTPAVVHFKVSAQG---ITLTDNQR-------KLFFRRHYPVNSITFSS 87 (157)
T ss_dssp HHHHHHHHHCC---CCEEEEEEEETTE---EEEEEEET-------TEEEEEEEEGGGEEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEEEEeCCC---ceEEeccc-------ceeehhcCcccceEeec
Confidence 455666665433335677888888877 88999864 23456666544334443
No 62
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex, phosphoprotein, disease mutation, immunoglobulin like, zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB: 2brq_A* 2jf1_A 3isw_A
Probab=30.34 E-value=52 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=21.0
Q ss_pred hhhcCCCceEEEEeeCCeeEEEEEECCCCC
Q 010846 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
+.|||...+.|.|.......++|.||+.|.
T Consensus 28 ~~dag~~~~~v~v~gp~~~~~~v~d~~dGt 57 (94)
T 2w0p_A 28 TREAGAGGLAIAVEGPSKAEISFEDRKDGS 57 (94)
T ss_dssp CGGGCSCCEEEEEEESSCCEEEEEECTTSC
T ss_pred EcCCCCCcEEEEEECCCCCeEEEEECCCCE
Confidence 346787788888864322358899999884
No 63
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=29.50 E-value=38 Score=27.21 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=21.2
Q ss_pred hhcCCCceEEEEee-CC-eeEEEEEECCCC
Q 010846 54 LDADATSINVVVKD-GG-LKLIQVSDDGHG 81 (499)
Q Consensus 54 lDA~At~I~I~i~~-~g-~~~i~V~DNG~G 81 (499)
-|||...+.|.|.. +| .-.++|.|||.|
T Consensus 34 ~~aG~~~l~v~i~~~~g~~~~~~v~d~~dG 63 (100)
T 3rgh_A 34 SSAGSAELTIEICSEAGLPAEVYIQDHGDG 63 (100)
T ss_dssp TTSCSCCEEEEEECTTSCBCEEEEEECSSS
T ss_pred CCCCCceEEEEEECCCCCEeEEEEEeCCCC
Confidence 46888889999853 33 336899999998
No 64
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=27.58 E-value=53 Score=27.47 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=24.3
Q ss_pred ccCCeEEEEEcCc---eeEEEeCCcEEEEecc
Q 010846 468 VRHCSFIGMADDV---YALLQHNTHMYLANVV 496 (499)
Q Consensus 468 ~~~~~~VG~vd~~---~~liQ~~t~Lylvd~~ 496 (499)
|..+.+||.+... |+|||-+.++|-|-.+
T Consensus 24 Ld~LkmvGtl~~~~~~~ALV~~dG~vyrVk~G 55 (113)
T 2ivw_A 24 LENMRYVGILKSGQKVSGFIEAEGYVYTVGVG 55 (113)
T ss_dssp TTTEEEEEEEECSSSEEEEEEETTEEEEECSS
T ss_pred hhheEEEEEEccCCeEEEEEEeCCcEEEEccC
Confidence 3578999999755 9999999999998655
No 65
>2lc4_A PILP protein; type IV pilus, structural protein; NMR {Pseudomonas aeruginosa}
Probab=25.87 E-value=71 Score=26.58 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.8
Q ss_pred ccCCeEEEEEcCc---eeEEEeCCcEEEEeccC
Q 010846 468 VRHCSFIGMADDV---YALLQHNTHMYLANVVS 497 (499)
Q Consensus 468 ~~~~~~VG~vd~~---~~liQ~~t~Lylvd~~~ 497 (499)
+.++.+||.+... |+|||-+.++|-|-.+.
T Consensus 28 Ld~L~mvG~l~~~~~~~ALV~~dG~vyrVk~G~ 60 (111)
T 2lc4_A 28 IETFEMVGTLSNAQGTFALVKGAGGVHRVRVGD 60 (111)
T ss_dssp SSSCEEEEEEEETTEEEEEEEETTEEEEEETTC
T ss_pred hhheEEEEEEccCCeEEEEEEeCCcEEEEccCC
Confidence 3578999999755 99999988999987654
No 66
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding protein, cytoskeleton, complex; 2.32A {Homo sapiens} SCOP: b.1.18.10 PDB: 2aav_A
Probab=24.89 E-value=60 Score=25.67 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred hhhcCCCceEEEEeeCCeeEEEEEECCCCC
Q 010846 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
+.|||...+.|.|.......+.|.|||.|.
T Consensus 31 t~dag~~~l~v~v~~p~~~~~~v~d~~dGt 60 (97)
T 2bp3_A 31 TKDAGEGGLSLAIEGPSKAEISCTDNQDGT 60 (97)
T ss_dssp CTTCCSEEEEEEEEESSCCEEEEEECSSSE
T ss_pred ECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 456777778888864322357889999883
No 67
>2y4x_A PILP protein; biosynthetic protein; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 2y4y_A
Probab=24.70 E-value=72 Score=25.64 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=24.5
Q ss_pred ccCCeEEEEEcCc---eeEEEeCCcEEEEeccC
Q 010846 468 VRHCSFIGMADDV---YALLQHNTHMYLANVVS 497 (499)
Q Consensus 468 ~~~~~~VG~vd~~---~~liQ~~t~Lylvd~~~ 497 (499)
+.++.+||.+... |+|||-+.++|-|-.+.
T Consensus 21 L~~L~mvG~l~~~~~~~ALV~~dg~v~~V~~G~ 53 (93)
T 2y4x_A 21 IETFEMVGTLSNAQGTFALVKGAGGVHRVRVGD 53 (93)
T ss_dssp GGGCEEEEEEEETTEEEEEEEETTEEEEECTTC
T ss_pred hhheEEEEEEccCCeEEEEEEeCCCEEEEccCC
Confidence 3578999999755 99999999999886553
No 68
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.19 E-value=53 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=21.6
Q ss_pred hhhcCCCceEEEEeeCCeeEEEEEECCCCC
Q 010846 53 SLDADATSINVVVKDGGLKLIQVSDDGHGI 82 (499)
Q Consensus 53 SlDA~At~I~I~i~~~g~~~i~V~DNG~GI 82 (499)
+.|||...+.|.|.......++|.||+.|.
T Consensus 36 t~dag~~~l~v~v~~p~~~~v~v~d~~dGt 65 (105)
T 2ee6_A 36 TREAGAGGLSIAVEGPSKAEITFDDHKNGS 65 (105)
T ss_dssp CSSSCCCCEEEEEESSSCEEEEECCCCSSC
T ss_pred ECCCCCCcEEEEEECCCCCEEEEEECCCCE
Confidence 456788888888864333357899999884
No 69
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.10 E-value=59 Score=27.35 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=21.4
Q ss_pred HchhhcCCCceEEEEeeCCeeEEEEEECCCC
Q 010846 51 ENSLDADATSINVVVKDGGLKLIQVSDDGHG 81 (499)
Q Consensus 51 eNSlDA~At~I~I~i~~~g~~~i~V~DNG~G 81 (499)
=++.|||...+.|.|.......+.++||+.|
T Consensus 44 v~t~daG~~~l~v~i~gp~~~~~~~~d~~dG 74 (125)
T 2eec_A 44 INTTRAGPGTLSVTIEGPSKVKMDCQETPEG 74 (125)
T ss_dssp EECTTTCSCCEEEEEESSSCCCCEEEECSSS
T ss_pred EEEcCCCCCcEEEEEECCCCCcceeEECCCC
Confidence 3567788888888886422224678888877
Done!