BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010847
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 17/219 (7%)
Query: 94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGED 153
++ ++GG+ +S S V +D + GV + + V RG T +G + + GG D
Sbjct: 64 RIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFD 122
Query: 154 RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDL 213
SR+ + + D W + QT + + + A+ + GG N +
Sbjct: 123 GSRRHTSMERY-DPNIDQWSMLGDMQTAR----EGAGLVVASGVIYCLGGYDGLNILNSV 177
Query: 214 HVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAW 273
D T W+ + T R+G ++++ Y+VGG D N+ +W
Sbjct: 178 EKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 274 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
+ +TS + + V + ++ G L A GY+G
Sbjct: 235 TTVTS------MTTPRCYVGATVLRGR--LYAIAGYDGN 265
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 130 VPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 189
+P+ GH+V + GG+ +K N V + + W + +T PR
Sbjct: 145 LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT---PRSMFG 201
Query: 190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWY 249
A+H + +++ GG + + DL+TN+W E+ + R+ + +++ + Y
Sbjct: 202 VAIHKGK-IVIAGGVTEDGLSASVEAFDLKTNKW---EVMTEFPQERSSISLVSLAGSLY 257
Query: 250 IVGG 253
+GG
Sbjct: 258 AIGG 261
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 33 YIVGGSRNGRFLSDVQ--VFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC--M 88
Y++ + N + + Q +FD RS++ NL ++ ED LLE P++ +
Sbjct: 343 YVLCHATNYKEFAFTQGFLFD-RSISEINLTVD--------EDYQLLECECPINRKFGDV 393
Query: 89 VKWGTKLLILGGHYKKSSDSMIVRFIDLE-TNLCGVMETSGKVPVARGGHSVTLV--GSR 145
G + +GG + ++ I + ++ + +S +VPVAR H+ T + ++
Sbjct: 394 DVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ 453
Query: 146 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVE-VTQTPPAPRYDHSAALHANRYLIVFGGC 204
L++ GG + L+D D++T W ++ ++ T R+ HSA + +++ GG
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT----RFRHSACSLPDGNVLILGGV 509
Query: 205 S 205
+
Sbjct: 510 T 510
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 51/250 (20%)
Query: 80 LPPMSDHCMVKWGTKLLILGGHYKKS---------SDSMIVRFIDLETNLCGVMETSGKV 130
L P H K G + GG++++S SD +R DL+
Sbjct: 13 LVPRGSHMAPKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQ------------- 59
Query: 131 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 190
V R G + +VG L GG + S D LD ++ + +P AP
Sbjct: 60 -VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC----YNPMTNQWSPCAP-----M 109
Query: 191 ALHANR--------YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 242
++ NR ++ GG I N + + + +EW + ++T R G
Sbjct: 110 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLTRRIGVGVA 166
Query: 243 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH 302
++ Y VGG D N + W ++T++ N + S G VC +
Sbjct: 167 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRS-GAGVCVL----HNC 218
Query: 303 LVAFGGYNGK 312
+ A GGY+G+
Sbjct: 219 IYAAGGYDGQ 228
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL- 192
R G V ++ + + GG D + LN V D+ET TW V AP +AL
Sbjct: 207 RSGAGVCVLHNCIYAAGGYD-GQDQLNSVERYDVETETWTFV-------APMKHRRSALG 258
Query: 193 ---HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 238
H R + V GG F + + D T+ WS+ + +GR+G
Sbjct: 259 ITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWSEVT---RMTSGRSG 303
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL- 192
R G V ++ + + GG D + LN V D+ET TW V AP H +AL
Sbjct: 200 RSGAGVCVLHNCIYAAGGYD-GQDQLNSVERYDVETETWTFV-------APMRHHRSALG 251
Query: 193 ---HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 238
H + + V GG F + + D ++ WS+ + +GR+G
Sbjct: 252 ITVHQGK-IYVLGGYDGHTFLDSVECYDPDSDTWSEVT---RMTSGRSG 296
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 90 KWGTKLLILGGHYKKS---------SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT 140
K G + GG++++S S+ +R DL+ V R G +
Sbjct: 16 KVGRLIYTAGGYFRQSLSYLEAYNPSNGSWLRLADLQ--------------VPRSGLAGC 61
Query: 141 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 200
+VG L GG + S D LD + + PR + + ++
Sbjct: 62 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGV-IDGHIYA 120
Query: 201 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC 260
GG I + + + + +EW + ++T R G ++ Y VGG D N
Sbjct: 121 VGGSHGCIHHSSVERYEPERDEW---HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 177
Query: 261 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
+ W ++T + N + S G VC + + A GGY+G+
Sbjct: 178 NSAECYYPERNEWRMITPM---NTIRS-GAGVCVL----HNCIYAAGGYDGQ 221
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL- 192
R G V ++ + + GG D + LN V D+ET TW V AP H +AL
Sbjct: 199 RSGAGVCVLHNCIYAAGGYD-GQDQLNSVERYDVETETWTFV-------APMRHHRSALG 250
Query: 193 ---HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 238
H + + V GG F + + D ++ WS+ + +GR+G
Sbjct: 251 ITVHQGK-IYVLGGYDGHTFLDSVECYDPDSDTWSEVT---RMTSGRSG 295
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 85/232 (36%), Gaps = 35/232 (15%)
Query: 90 KWGTKLLILGGHYKKS---------SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT 140
K G + GG++++S S+ +R DL+ V R G +
Sbjct: 15 KVGRLIYTAGGYFRQSLSYLEAYNPSNGSWLRLADLQ--------------VPRSGLAGC 60
Query: 141 LVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIV 200
+VG L GG + S D LD + + PR + + ++
Sbjct: 61 VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGV-IDGHIYA 119
Query: 201 FGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGC 260
GG I + + + + +EW + ++T R G ++ Y VGG D N
Sbjct: 120 VGGSHGCIHHSSVERYEPERDEW---HLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 176
Query: 261 QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK 312
+ W ++T + N + S G VC + + A GGY+G+
Sbjct: 177 NSAECYYPERNEWRMITPM---NTIRS-GAGVCVL----HNCIYAAGGYDGQ 220
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 12/178 (6%)
Query: 80 LPPM-SDHCMVKWGTKL---LILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARG 135
+PP+ S C+ G L ++GG K + + + + L S +P
Sbjct: 82 MPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYD-RLSFKWGESDPLPYVVY 140
Query: 136 GHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHAN 195
GH+V + + GG+ RK LN + D + W + QT R A +H
Sbjct: 141 GHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT---ARSLFGATVHDG 197
Query: 196 RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGG 253
R +IV G + + + V + N+W+ E R+ + +++ Y +GG
Sbjct: 198 R-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEA---FPQERSSLSLVSLVGTLYAIGG 251
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 52/250 (20%)
Query: 80 LPPMSDHCMVKWGTKLLILGGHYKKS---------SDSMIVRFIDLETNLCGVMETSGKV 130
L P H K G + GG++++S SD +R DL+
Sbjct: 13 LVPRGSH-APKVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQ------------- 58
Query: 131 PVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 190
V R G + +VG L GG + S D LD ++ + +P AP
Sbjct: 59 -VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC----YNPMTNQWSPCAP-----M 108
Query: 191 ALHANR--------YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI 242
++ NR ++ GG I N + + + +EW + ++T R G
Sbjct: 109 SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW---HLVAPMLTRRIGVGVA 165
Query: 243 TIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH 302
++ Y VGG D N + W ++T++ N + S G VC +
Sbjct: 166 VLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM---NTIRS-GAGVCVL----HNC 217
Query: 303 LVAFGGYNGK 312
+ A GGY+G+
Sbjct: 218 IYAAGGYDGQ 227
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL- 192
R G V ++ + + GG D + LN V D+ET TW V AP +AL
Sbjct: 206 RSGAGVCVLHNCIYAAGGYD-GQDQLNSVERYDVETETWTFV-------APMKHRRSALG 257
Query: 193 ---HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAG 238
H R + V GG F + + D T+ WS+ + +GR+G
Sbjct: 258 ITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWSEVT---RMTSGRSG 302
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 146 LIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 204
L GG D SR+ L+ V + T W + T R + N L GG
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST----RRSGAGVGVLNNLLYAVGGH 213
Query: 205 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 264
+ + V D TN W Q D+ R ++ Y+VGG D +
Sbjct: 214 DGPLVRKSVEVYDPTTNAWRQ---VADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270
Query: 265 VLNMTKLAWSILTS 278
N T W++++S
Sbjct: 271 YYNPTTDKWTVVSS 284
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 181 PPAPRYDHSAALHANRYLIVFGGCSH-----SIFFNDLHVLDLQTNEWSQPEIKGDLVTG 235
P PR D + + + L VFGG + FND+H + +TN W + + G
Sbjct: 52 PGGPR-DQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK--LXSHAPXG 108
Query: 236 RAGHAGITIDENWYIVGGGDNN--NGCQETI 264
AGH + Y+ GG + N NG E +
Sbjct: 109 XAGHVTFVHNGKAYVTGGVNQNIFNGYFEDL 139
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL- 192
R G V ++ + + GG D + LN V D+ET TW V AP +AL
Sbjct: 206 RSGAGVCVLHNCIYAAGGYD-GQDQLNSVERYDVETETWTFV-------APXKHRRSALG 257
Query: 193 ---HANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ 225
H R + V GG F + + D T+ WS+
Sbjct: 258 ITVHQGR-IYVLGGYDGHTFLDSVECYDPDTDTWSE 292
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 283 NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVF 318
NP E +++ +A + G H V GG NG + VF
Sbjct: 353 NPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVF 388
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 34/177 (19%)
Query: 146 LIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC- 204
+ I GG L + +D + D+ PP PR D AA A + GG
Sbjct: 58 VYILGGSQ-----LFPIKRMDCYNVVKDSWYSKLGPPTPR-DSLAACAAEGKIYTSGGSE 111
Query: 205 --SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE 262
+ +++ + + D +T W K ++T R H + + Y+ GG NN
Sbjct: 112 VGNSALYLFECY--DTRTESW---HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNN---- 162
Query: 263 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHH--------LVAFGGYNG 311
++ +L S + +P +C I ++H + A GG NG
Sbjct: 163 --------VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211
>pdb|1T3J|A Chain A, Mitofusin Domain Hr2 V686mI708M MUTANT
Length = 96
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 415 NSTHSELSKELSSVQGQLVAERSRCFK-LEAQIAELQKMLESSQTIENEVQILRQQKSAF 473
N +H ++ +E+++ +L + K LE +IA L K ++ + ++N ++LR +
Sbjct: 25 NCSH-QVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83
Query: 474 EQEME 478
E E+E
Sbjct: 84 ESELE 88
>pdb|1ZVF|A Chain A, The Crystal Structure Of 3-Hydroxyanthranilate 3,4-
Dioxygenase From Saccharomyces Cerevisiae
pdb|1ZVF|B Chain B, The Crystal Structure Of 3-Hydroxyanthranilate 3,4-
Dioxygenase From Saccharomyces Cerevisiae
Length = 176
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
Query: 64 TELDADK--TEDSGLLEVLPPMSDHCMVKWGTKLLILGG 100
T ++ DK E+ GLL+ PP++++C+ K G ++I+GG
Sbjct: 6 TPINIDKWLKENEGLLK--PPVNNYCLHKGGFTVMIVGG 42
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 28 RYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETEL 66
+ K + IVG G F +++QV LR+L W+N++ + +L
Sbjct: 323 KMKDMCIVGNI--GHFDNEIQVAALRNLKWTNVKPQVDL 359
>pdb|2FXO|A Chain A, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|B Chain B, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|C Chain C, Structure Of The Human Beta-myosin S2 Fragment
pdb|2FXO|D Chain D, Structure Of The Human Beta-myosin S2 Fragment
Length = 129
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Query: 374 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLV 433
L + ++ ++KE+ L+ +L + EK+ + ++L ++ + Q L
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA 65
Query: 434 AERSRC-------FKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 479
RC +LEA++ E+ K LE + + E+ +++ E++R
Sbjct: 66 DAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,644,957
Number of Sequences: 62578
Number of extensions: 597560
Number of successful extensions: 1449
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1412
Number of HSP's gapped (non-prelim): 70
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)