Query 010847
Match_columns 499
No_of_seqs 314 out of 2663
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 2.9E-43 6.3E-48 357.1 37.6 304 4-324 138-469 (470)
2 PLN02153 epithiospecifier prot 100.0 1.3E-41 2.7E-46 333.4 35.9 299 10-323 4-339 (341)
3 KOG4441 Proteins containing BT 100.0 1.7E-40 3.7E-45 340.5 29.5 273 31-338 286-561 (571)
4 PLN02193 nitrile-specifier pro 100.0 1.9E-39 4.1E-44 329.3 33.7 303 31-355 122-453 (470)
5 KOG4693 Uncharacterized conser 100.0 3.6E-39 7.9E-44 280.6 23.2 271 31-310 25-312 (392)
6 KOG4441 Proteins containing BT 100.0 2.3E-38 5.1E-43 324.7 27.2 243 6-278 304-555 (571)
7 PHA02713 hypothetical protein; 100.0 1E-37 2.2E-42 321.7 31.4 271 27-335 255-545 (557)
8 PLN02153 epithiospecifier prot 100.0 4.7E-37 1E-41 301.0 30.9 286 52-356 4-325 (341)
9 KOG0379 Kelch repeat-containin 100.0 3.9E-37 8.4E-42 311.2 30.6 295 14-322 46-356 (482)
10 PHA02713 hypothetical protein; 100.0 8.8E-38 1.9E-42 322.2 26.0 242 4-278 273-542 (557)
11 KOG4693 Uncharacterized conser 100.0 3.8E-37 8.2E-42 268.1 17.2 269 81-355 12-312 (392)
12 PHA03098 kelch-like protein; P 100.0 6.8E-35 1.5E-39 303.5 28.5 246 6-281 267-523 (534)
13 KOG0379 Kelch repeat-containin 100.0 9E-35 1.9E-39 294.0 26.1 252 77-334 55-312 (482)
14 PHA03098 kelch-like protein; P 100.0 3.7E-34 8.1E-39 297.9 29.4 267 31-335 252-523 (534)
15 KOG1230 Protein containing rep 100.0 1.3E-34 2.8E-39 266.7 20.2 240 22-276 61-347 (521)
16 TIGR03548 mutarot_permut cycli 100.0 5E-33 1.1E-37 270.7 28.5 251 31-311 15-314 (323)
17 TIGR03548 mutarot_permut cycli 100.0 5.1E-33 1.1E-37 270.6 27.4 267 81-359 2-317 (323)
18 TIGR03547 muta_rot_YjhT mutatr 100.0 1E-32 2.2E-37 271.4 29.6 255 31-321 19-344 (346)
19 PRK14131 N-acetylneuraminic ac 100.0 3.9E-32 8.5E-37 269.1 28.6 276 14-328 18-373 (376)
20 KOG4152 Host cell transcriptio 100.0 5.9E-33 1.3E-37 261.6 21.3 296 9-323 13-363 (830)
21 PHA02790 Kelch-like protein; P 100.0 4.1E-32 8.8E-37 276.4 28.8 228 8-277 251-478 (480)
22 TIGR03547 muta_rot_YjhT mutatr 100.0 4E-31 8.6E-36 260.1 27.7 263 80-357 5-333 (346)
23 KOG1230 Protein containing rep 100.0 1E-31 2.2E-36 247.7 20.1 248 78-332 62-349 (521)
24 PRK14131 N-acetylneuraminic ac 100.0 1.3E-30 2.8E-35 258.2 25.4 243 5-275 52-374 (376)
25 PHA02790 Kelch-like protein; P 100.0 3.8E-29 8.2E-34 254.7 28.1 210 88-330 267-477 (480)
26 KOG4152 Host cell transcriptio 100.0 5.2E-30 1.1E-34 241.8 16.0 279 54-353 16-340 (830)
27 COG3055 Uncharacterized protei 99.8 6.3E-18 1.4E-22 155.0 18.0 267 80-361 34-365 (381)
28 COG3055 Uncharacterized protei 99.7 6.1E-16 1.3E-20 142.1 21.5 257 31-324 48-375 (381)
29 KOG2437 Muskelin [Signal trans 99.6 9.6E-17 2.1E-21 152.3 4.3 256 10-278 236-543 (723)
30 KOG2437 Muskelin [Signal trans 99.6 6.7E-16 1.5E-20 146.7 7.9 271 52-329 236-540 (723)
31 PLN02772 guanylate kinase 99.2 9E-11 2E-15 112.8 11.7 92 128-221 19-110 (398)
32 PF13964 Kelch_6: Kelch motif 99.2 4.6E-11 1E-15 81.2 6.4 50 82-134 1-50 (50)
33 PF13964 Kelch_6: Kelch motif 99.1 1.4E-10 3E-15 78.9 6.4 50 133-185 1-50 (50)
34 PLN02772 guanylate kinase 99.0 2.4E-09 5.2E-14 103.1 11.7 87 80-169 22-109 (398)
35 PF13415 Kelch_3: Galactose ox 99.0 1.2E-09 2.6E-14 73.8 6.2 48 143-193 1-49 (49)
36 PF13415 Kelch_3: Galactose ox 98.9 2E-09 4.4E-14 72.6 5.8 47 195-244 1-49 (49)
37 PF01344 Kelch_1: Kelch motif; 98.9 1.9E-09 4.2E-14 72.2 5.1 44 82-125 1-44 (47)
38 PF03089 RAG2: Recombination a 98.9 5E-08 1.1E-12 87.5 14.8 137 129-266 18-187 (337)
39 PF07646 Kelch_2: Kelch motif; 98.9 5.6E-09 1.2E-13 70.4 6.3 46 133-178 1-48 (49)
40 PF01344 Kelch_1: Kelch motif; 98.9 4.9E-09 1.1E-13 70.2 5.6 46 133-178 1-46 (47)
41 PF07646 Kelch_2: Kelch motif; 98.8 1.2E-08 2.6E-13 68.8 6.4 44 82-125 1-46 (49)
42 PF13418 Kelch_4: Galactose ox 98.8 6.9E-09 1.5E-13 70.1 4.6 44 133-176 1-45 (49)
43 PF13418 Kelch_4: Galactose ox 98.8 6.7E-09 1.4E-13 70.2 4.1 47 82-131 1-48 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.8 8.4E-07 1.8E-11 80.8 18.6 177 111-308 48-243 (243)
45 PF03089 RAG2: Recombination a 98.7 5.4E-06 1.2E-10 74.7 21.4 180 77-258 16-232 (337)
46 PF13854 Kelch_5: Kelch motif 98.7 5.9E-08 1.3E-12 62.8 5.7 41 130-170 1-42 (42)
47 PF13854 Kelch_5: Kelch motif 98.7 5.8E-08 1.3E-12 62.9 5.4 40 80-119 2-42 (42)
48 smart00612 Kelch Kelch domain. 98.6 9.6E-08 2.1E-12 63.8 4.7 47 31-93 1-47 (47)
49 smart00612 Kelch Kelch domain. 98.5 2.6E-07 5.6E-12 61.7 4.7 47 94-144 1-47 (47)
50 TIGR01640 F_box_assoc_1 F-box 98.4 5.3E-05 1.2E-09 69.9 20.6 191 6-221 17-230 (230)
51 TIGR01640 F_box_assoc_1 F-box 98.4 0.00018 3.9E-09 66.4 23.3 201 110-325 15-230 (230)
52 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00026 5.5E-09 64.7 15.4 151 162-335 48-210 (243)
53 PF13360 PQQ_2: PQQ-like domai 97.7 0.04 8.7E-07 50.8 28.7 211 46-325 4-232 (238)
54 PRK11138 outer membrane biogen 97.3 0.23 5E-06 49.8 27.7 173 46-272 171-356 (394)
55 PF12768 Rax2: Cortical protei 97.0 0.044 9.4E-07 51.6 16.4 123 96-228 2-130 (281)
56 PF12768 Rax2: Cortical protei 97.0 0.017 3.7E-07 54.3 13.6 121 148-278 2-130 (281)
57 PRK11138 outer membrane biogen 97.0 0.29 6.2E-06 49.2 23.2 155 87-275 64-231 (394)
58 TIGR03300 assembly_YfgL outer 97.0 0.47 1E-05 47.2 26.9 174 46-275 116-305 (377)
59 PF09726 Macoilin: Transmembra 97.0 0.0063 1.4E-07 64.5 11.3 98 383-483 420-517 (697)
60 KOG2055 WD40 repeat protein [G 96.9 0.035 7.6E-07 53.9 14.7 153 31-223 226-378 (514)
61 PF02191 OLF: Olfactomedin-lik 96.9 0.24 5.3E-06 45.9 20.0 188 31-251 32-236 (250)
62 PF12718 Tropomyosin_1: Tropom 96.9 0.025 5.5E-07 47.3 12.1 11 436-446 79-89 (143)
63 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.42 9.2E-06 45.3 27.9 188 31-273 2-191 (300)
64 PF13360 PQQ_2: PQQ-like domai 96.8 0.4 8.6E-06 44.0 25.5 179 31-272 38-233 (238)
65 PF07893 DUF1668: Protein of u 96.8 0.044 9.5E-07 53.6 15.0 127 91-238 75-223 (342)
66 PF09726 Macoilin: Transmembra 96.5 0.021 4.5E-07 60.7 11.3 15 48-62 130-144 (697)
67 TIGR03300 assembly_YfgL outer 96.4 1.1 2.4E-05 44.5 27.0 170 46-272 156-341 (377)
68 PF07893 DUF1668: Protein of u 96.4 0.56 1.2E-05 45.9 19.5 107 45-176 86-215 (342)
69 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.8 3.9E-05 45.1 25.3 123 87-226 64-198 (527)
70 TIGR02800 propeller_TolB tol-p 96.3 1.5 3.3E-05 44.2 23.6 148 45-227 214-362 (417)
71 PF07888 CALCOCO1: Calcium bin 96.1 0.11 2.4E-06 52.8 13.2 49 405-453 188-236 (546)
72 KOG0310 Conserved WD40 repeat- 96.1 0.75 1.6E-05 45.3 18.1 175 89-311 119-301 (487)
73 PF10282 Lactonase: Lactonase, 96.0 1.9 4E-05 42.4 21.9 277 5-330 17-331 (345)
74 COG1579 Zn-ribbon protein, pos 95.9 0.17 3.7E-06 45.9 12.4 63 394-456 51-122 (239)
75 PRK10361 DNA recombination pro 95.9 0.16 3.4E-06 51.0 13.2 36 458-493 169-206 (475)
76 smart00284 OLF Olfactomedin-li 95.9 1.4 3E-05 40.7 20.8 159 80-251 71-241 (255)
77 PRK04792 tolB translocation pr 95.9 2 4.4E-05 43.8 21.9 147 45-227 242-390 (448)
78 PF07888 CALCOCO1: Calcium bin 95.9 0.1 2.3E-06 52.9 11.7 34 459-492 429-462 (546)
79 PRK04043 tolB translocation pr 95.8 2.4 5.2E-05 42.8 24.7 193 46-279 214-410 (419)
80 PF11559 ADIP: Afadin- and alp 95.8 0.32 6.9E-06 41.4 13.2 92 392-483 56-148 (151)
81 PF04111 APG6: Autophagy prote 95.8 0.084 1.8E-06 50.7 10.5 24 458-481 110-133 (314)
82 KOG2055 WD40 repeat protein [G 95.8 0.46 1E-05 46.5 15.0 149 93-272 225-377 (514)
83 PF08450 SGL: SMP-30/Gluconola 95.6 1.9 4.2E-05 39.9 20.8 189 45-277 22-221 (246)
84 KOG0804 Cytoplasmic Zn-finger 95.6 0.26 5.7E-06 48.0 12.6 9 262-270 268-276 (493)
85 PRK00178 tolB translocation pr 95.6 3.1 6.7E-05 42.2 22.6 191 45-277 223-414 (430)
86 COG2433 Uncharacterized conser 95.6 0.13 2.8E-06 52.1 10.9 79 403-481 423-508 (652)
87 cd00216 PQQ_DH Dehydrogenases 95.5 3.6 7.8E-05 42.6 23.2 113 45-176 71-193 (488)
88 COG1579 Zn-ribbon protein, pos 95.5 0.24 5.1E-06 45.0 11.5 50 395-444 31-80 (239)
89 PF13851 GAS: Growth-arrest sp 95.5 0.44 9.6E-06 42.5 13.1 32 396-427 49-80 (201)
90 PF04156 IncA: IncA protein; 95.4 0.39 8.5E-06 42.7 12.9 48 403-450 103-150 (191)
91 cd00094 HX Hemopexin-like repe 95.4 1.6 3.6E-05 38.8 16.8 155 87-272 11-178 (194)
92 PF05096 Glu_cyclase_2: Glutam 95.4 1.8 3.9E-05 40.1 17.0 155 91-276 54-210 (264)
93 COG2433 Uncharacterized conser 95.4 0.11 2.4E-06 52.5 9.8 36 396-431 430-465 (652)
94 PRK05137 tolB translocation pr 95.3 3.8 8.2E-05 41.7 25.1 193 45-277 226-420 (435)
95 PTZ00421 coronin; Provisional 95.3 4.3 9.3E-05 41.9 28.1 63 93-171 138-201 (493)
96 PF13851 GAS: Growth-arrest sp 95.2 0.24 5.1E-06 44.3 10.4 22 459-480 105-126 (201)
97 COG4946 Uncharacterized protei 95.1 2.8 6.1E-05 41.5 17.9 188 108-332 106-304 (668)
98 PF05384 DegS: Sensor protein 95.1 0.69 1.5E-05 39.3 12.4 48 383-430 8-55 (159)
99 PF10473 CENP-F_leu_zip: Leuci 95.1 1 2.3E-05 37.3 13.1 72 386-457 29-100 (140)
100 PF02897 Peptidase_S9_N: Proly 95.1 2.3 5E-05 42.9 18.8 240 43-327 148-408 (414)
101 PRK09039 hypothetical protein; 95.0 0.35 7.6E-06 47.2 11.9 22 436-457 136-157 (343)
102 cd00216 PQQ_DH Dehydrogenases 94.9 5.4 0.00012 41.3 25.2 124 87-226 56-192 (488)
103 PF04156 IncA: IncA protein; 94.9 0.76 1.6E-05 40.8 13.0 28 430-457 123-150 (191)
104 PRK04922 tolB translocation pr 94.8 5.2 0.00011 40.7 25.5 190 45-277 228-419 (433)
105 COG4372 Uncharacterized protei 94.8 0.69 1.5E-05 44.2 12.6 61 397-457 111-171 (499)
106 PF10186 Atg14: UV radiation r 94.8 0.4 8.6E-06 46.1 11.8 51 403-453 57-107 (302)
107 PRK04792 tolB translocation pr 94.7 5.7 0.00012 40.6 25.4 149 109-278 242-391 (448)
108 PF08450 SGL: SMP-30/Gluconola 94.7 2 4.4E-05 39.7 16.0 154 46-226 61-220 (246)
109 KOG0250 DNA repair protein RAD 94.7 0.44 9.5E-06 51.9 12.4 52 402-453 372-424 (1074)
110 PF08614 ATG16: Autophagy prot 94.6 0.23 5E-06 44.2 9.0 55 403-457 96-150 (194)
111 KOG1029 Endocytic adaptor prot 94.6 0.58 1.3E-05 48.7 12.5 26 383-408 326-351 (1118)
112 KOG1853 LIS1-interacting prote 94.5 0.93 2E-05 40.6 12.0 23 429-451 97-119 (333)
113 PF04111 APG6: Autophagy prote 94.5 0.45 9.9E-06 45.7 11.2 20 458-477 103-122 (314)
114 PF05096 Glu_cyclase_2: Glutam 94.4 2.9 6.2E-05 38.8 15.5 141 44-225 67-209 (264)
115 COG4026 Uncharacterized protei 94.3 0.3 6.5E-06 42.8 8.4 71 399-469 132-206 (290)
116 PRK04922 tolB translocation pr 94.3 7 0.00015 39.7 24.9 146 109-278 228-377 (433)
117 PRK05137 tolB translocation pr 94.2 7.1 0.00015 39.7 26.8 187 109-325 226-414 (435)
118 KOG0995 Centromere-associated 94.2 0.5 1.1E-05 47.7 10.9 29 407-435 292-320 (581)
119 PRK10884 SH3 domain-containing 94.1 0.41 8.9E-06 42.8 9.2 12 442-453 137-148 (206)
120 PRK09039 hypothetical protein; 94.1 0.63 1.4E-05 45.4 11.4 53 404-456 118-170 (343)
121 KOG0250 DNA repair protein RAD 94.1 0.55 1.2E-05 51.2 11.6 48 383-430 677-724 (1074)
122 PF15035 Rootletin: Ciliary ro 94.0 0.48 1E-05 41.4 9.2 73 423-495 60-136 (182)
123 PF10168 Nup88: Nuclear pore c 93.9 0.33 7.3E-06 52.0 9.9 39 405-443 568-606 (717)
124 PRK00178 tolB translocation pr 93.8 8.5 0.00018 39.0 26.0 147 109-278 223-372 (430)
125 COG4026 Uncharacterized protei 93.8 0.95 2.1E-05 39.8 10.4 33 425-457 144-176 (290)
126 PF09755 DUF2046: Uncharacteri 93.7 1.4 3.1E-05 41.4 12.3 44 383-426 86-130 (310)
127 PF10481 CENP-F_N: Cenp-F N-te 93.7 1.3 2.9E-05 40.3 11.5 70 411-480 48-128 (307)
128 KOG0995 Centromere-associated 93.6 0.8 1.7E-05 46.3 11.0 50 404-453 275-324 (581)
129 KOG0804 Cytoplasmic Zn-finger 93.6 1.3 2.9E-05 43.3 12.1 9 315-323 267-275 (493)
130 TIGR03752 conj_TIGR03752 integ 93.6 0.5 1.1E-05 47.0 9.5 20 370-389 52-71 (472)
131 PF10282 Lactonase: Lactonase, 93.5 8.2 0.00018 37.9 24.5 247 33-323 2-275 (345)
132 KOG0646 WD40 repeat protein [G 93.5 6.8 0.00015 38.7 16.7 60 83-154 82-145 (476)
133 TIGR02169 SMC_prok_A chromosom 93.5 0.73 1.6E-05 53.4 12.5 6 304-309 138-143 (1164)
134 KOG0163 Myosin class VI heavy 93.4 1.1 2.3E-05 46.8 11.8 9 93-101 216-224 (1259)
135 PRK03629 tolB translocation pr 93.4 10 0.00022 38.5 22.2 190 45-277 223-414 (429)
136 TIGR03752 conj_TIGR03752 integ 93.4 0.43 9.4E-06 47.4 8.7 20 458-477 120-139 (472)
137 TIGR02658 TTQ_MADH_Hv methylam 93.4 8.6 0.00019 37.6 29.4 119 31-174 14-142 (352)
138 PF11932 DUF3450: Protein of u 93.4 2.1 4.6E-05 39.9 13.1 15 404-418 51-65 (251)
139 COG5185 HEC1 Protein involved 93.3 0.74 1.6E-05 45.2 9.9 9 383-391 273-281 (622)
140 PF12128 DUF3584: Protein of u 93.3 0.99 2.1E-05 52.1 12.9 55 383-437 602-656 (1201)
141 PF06785 UPF0242: Uncharacteri 93.2 1.7 3.8E-05 40.7 11.8 7 346-352 53-59 (401)
142 PF14662 CCDC155: Coiled-coil 93.2 3.5 7.6E-05 35.8 12.9 16 402-417 36-51 (193)
143 PRK11028 6-phosphogluconolacto 93.0 9.2 0.0002 37.1 25.9 146 31-220 3-157 (330)
144 PF08268 FBA_3: F-box associat 93.0 3.7 8.1E-05 33.7 12.8 83 195-278 5-89 (129)
145 PF15290 Syntaphilin: Golgi-lo 92.9 1.5 3.2E-05 40.2 10.7 95 383-480 70-171 (305)
146 KOG2077 JNK/SAPK-associated pr 92.9 1.1 2.3E-05 45.2 10.6 15 482-496 436-450 (832)
147 KOG1853 LIS1-interacting prote 92.9 2.9 6.4E-05 37.6 12.2 35 404-438 47-81 (333)
148 PF08581 Tup_N: Tup N-terminal 92.9 1.5 3.2E-05 32.4 8.8 69 396-470 5-73 (79)
149 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.9 3.3 7.1E-05 34.2 12.2 18 436-453 65-82 (132)
150 PF11559 ADIP: Afadin- and alp 92.8 3.6 7.9E-05 34.9 12.8 35 409-443 66-100 (151)
151 PTZ00420 coronin; Provisional 92.8 15 0.00032 38.7 24.5 62 145-222 139-200 (568)
152 PF12217 End_beta_propel: Cata 92.6 4.4 9.6E-05 37.0 13.1 118 84-205 192-334 (367)
153 KOG0288 WD40 repeat protein Ti 92.6 2.5 5.5E-05 41.0 12.2 54 386-439 18-71 (459)
154 KOG2321 WD40 repeat protein [G 92.6 3.7 8E-05 41.7 13.7 122 183-324 132-259 (703)
155 PF11180 DUF2968: Protein of u 92.5 1.5 3.4E-05 37.9 9.8 21 458-478 158-178 (192)
156 KOG0971 Microtubule-associated 92.5 2.4 5.2E-05 45.2 12.9 24 423-446 325-348 (1243)
157 PRK03629 tolB translocation pr 92.4 14 0.0003 37.6 26.0 149 109-278 223-372 (429)
158 KOG2129 Uncharacterized conser 92.4 1.2 2.6E-05 43.0 9.9 9 462-470 279-287 (552)
159 PF00769 ERM: Ezrin/radixin/mo 92.3 2.3 4.9E-05 39.4 11.5 35 383-417 14-48 (246)
160 TIGR01005 eps_transp_fam exopo 92.3 0.87 1.9E-05 50.0 10.4 69 403-471 317-386 (754)
161 PF06637 PV-1: PV-1 protein (P 92.2 1.9 4E-05 41.3 10.7 32 406-437 289-320 (442)
162 PF00261 Tropomyosin: Tropomyo 92.2 3.5 7.6E-05 38.0 12.7 51 406-456 103-153 (237)
163 PF04849 HAP1_N: HAP1 N-termin 92.2 3.7 8.1E-05 38.7 12.7 46 412-457 209-254 (306)
164 PF12217 End_beta_propel: Cata 92.2 9.2 0.0002 35.0 21.0 263 34-310 33-334 (367)
165 PF00769 ERM: Ezrin/radixin/mo 92.1 2.2 4.8E-05 39.4 11.3 11 403-413 20-30 (246)
166 TIGR02800 propeller_TolB tol-p 92.1 14 0.00031 37.0 26.5 148 109-278 214-363 (417)
167 PF11180 DUF2968: Protein of u 92.1 2.8 6.1E-05 36.4 10.8 19 459-477 166-184 (192)
168 COG1322 Predicted nuclease of 92.0 3.3 7.1E-05 41.7 12.9 58 436-493 138-197 (448)
169 PLN00181 protein SPA1-RELATED; 91.9 23 0.00051 39.2 24.9 61 92-170 587-650 (793)
170 PF09304 Cortex-I_coil: Cortex 91.9 4.9 0.00011 31.3 12.1 35 421-455 42-76 (107)
171 TIGR03007 pepcterm_ChnLen poly 91.9 1.6 3.4E-05 45.4 11.3 48 424-471 318-365 (498)
172 PF05384 DegS: Sensor protein 91.9 6.8 0.00015 33.3 12.9 37 425-461 86-122 (159)
173 PF06818 Fez1: Fez1; InterPro 91.9 3.8 8.3E-05 36.1 11.6 52 404-455 54-105 (202)
174 KOG2991 Splicing regulator [RN 91.8 2.2 4.8E-05 38.4 10.2 78 379-458 215-292 (330)
175 PF09730 BicD: Microtubule-ass 91.7 1.7 3.8E-05 46.1 11.1 62 381-442 34-95 (717)
176 PF09304 Cortex-I_coil: Cortex 91.6 5.3 0.00012 31.1 10.9 54 403-456 17-70 (107)
177 KOG4403 Cell surface glycoprot 91.6 1.4 3.1E-05 42.7 9.4 18 461-478 309-326 (575)
178 KOG0996 Structural maintenance 91.6 2.2 4.8E-05 47.0 11.7 26 458-483 444-469 (1293)
179 PRK15422 septal ring assembly 91.6 2.4 5.2E-05 30.8 8.3 21 404-424 20-40 (79)
180 KOG0649 WD40 repeat protein [G 91.5 11 0.00023 34.3 16.9 91 55-173 99-191 (325)
181 KOG3647 Predicted coiled-coil 91.5 4.3 9.2E-05 36.9 11.7 46 398-443 115-160 (338)
182 COG4257 Vgb Streptogramin lyas 91.5 12 0.00025 34.8 17.3 60 210-278 253-314 (353)
183 cd00200 WD40 WD40 domain, foun 91.5 11 0.00024 34.5 25.5 186 93-324 63-250 (289)
184 PF00038 Filament: Intermediat 91.4 4.2 9E-05 39.3 13.0 72 407-478 207-286 (312)
185 PF09738 DUF2051: Double stran 91.4 3.2 6.9E-05 39.5 11.6 51 404-454 114-164 (302)
186 KOG0243 Kinesin-like protein [ 91.4 2.8 6E-05 46.0 12.4 26 407-432 446-471 (1041)
187 PF12325 TMF_TATA_bd: TATA ele 91.3 6.1 0.00013 31.9 11.5 26 435-460 66-91 (120)
188 PF10234 Cluap1: Clusterin-ass 91.3 5.2 0.00011 37.2 12.5 33 425-457 185-217 (267)
189 PRK04043 tolB translocation pr 91.3 18 0.00039 36.6 23.3 185 109-325 213-402 (419)
190 KOG0971 Microtubule-associated 91.2 3 6.6E-05 44.5 12.0 30 457-486 328-357 (1243)
191 PF08268 FBA_3: F-box associat 91.2 7.3 0.00016 31.9 12.8 87 89-177 2-89 (129)
192 KOG0649 WD40 repeat protein [G 91.2 11 0.00025 34.1 14.9 141 118-280 98-246 (325)
193 PF15066 CAGE1: Cancer-associa 91.2 2.7 5.8E-05 41.4 10.9 20 407-426 388-407 (527)
194 COG4942 Membrane-bound metallo 91.2 4.6 0.0001 39.9 12.7 18 440-457 213-230 (420)
195 TIGR03185 DNA_S_dndD DNA sulfu 91.2 2.4 5.2E-05 45.6 12.0 11 95-105 30-40 (650)
196 PF00038 Filament: Intermediat 91.2 5.7 0.00012 38.3 13.7 54 425-478 218-272 (312)
197 KOG2129 Uncharacterized conser 91.1 1.7 3.6E-05 42.0 9.3 11 419-429 182-192 (552)
198 PF10186 Atg14: UV radiation r 91.1 3.6 7.7E-05 39.4 12.2 38 401-438 69-106 (302)
199 PF02191 OLF: Olfactomedin-lik 91.1 13 0.00028 34.5 18.9 162 92-275 30-209 (250)
200 KOG0161 Myosin class II heavy 91.0 3 6.5E-05 49.4 13.0 20 459-478 1123-1142(1930)
201 PF00261 Tropomyosin: Tropomyo 91.0 2 4.4E-05 39.6 9.8 16 465-480 117-132 (237)
202 PF09910 DUF2139: Uncharacteri 90.8 14 0.00031 34.6 14.8 132 44-203 77-222 (339)
203 TIGR03185 DNA_S_dndD DNA sulfu 90.8 2 4.3E-05 46.2 11.0 69 410-478 210-279 (650)
204 KOG0249 LAR-interacting protei 90.6 0.93 2E-05 46.9 7.6 23 436-458 162-184 (916)
205 TIGR03866 PQQ_ABC_repeats PQQ- 90.3 16 0.00034 34.3 29.5 147 31-223 44-191 (300)
206 COG1196 Smc Chromosome segrega 90.3 3.3 7.1E-05 47.8 12.7 7 244-250 100-106 (1163)
207 TIGR01069 mutS2 MutS2 family p 90.3 3.9 8.4E-05 44.7 12.6 8 488-495 626-633 (771)
208 PF10498 IFT57: Intra-flagella 90.2 6 0.00013 38.8 12.6 45 377-421 216-260 (359)
209 PF09789 DUF2353: Uncharacteri 90.2 2.8 6E-05 39.9 10.0 13 459-471 138-150 (319)
210 KOG0994 Extracellular matrix g 90.1 3.3 7.1E-05 45.5 11.2 19 43-61 613-632 (1758)
211 PRK02889 tolB translocation pr 90.1 23 0.00051 35.9 25.2 184 45-271 220-405 (427)
212 PRK02889 tolB translocation pr 89.8 25 0.00053 35.7 24.2 146 109-277 220-368 (427)
213 PF15070 GOLGA2L5: Putative go 89.7 4.1 8.9E-05 43.0 11.8 49 383-431 17-65 (617)
214 PF12761 End3: Actin cytoskele 89.7 7.9 0.00017 33.9 11.5 12 319-330 39-53 (195)
215 KOG0994 Extracellular matrix g 89.7 2.7 5.9E-05 46.1 10.3 9 417-425 1620-1628(1758)
216 PRK13684 Ycf48-like protein; P 89.6 21 0.00046 34.8 18.3 163 47-253 154-321 (334)
217 KOG3850 Predicted membrane pro 89.6 2.8 6.1E-05 40.2 9.3 23 424-446 293-315 (455)
218 PTZ00420 coronin; Provisional 89.6 30 0.00065 36.4 24.0 62 93-171 138-200 (568)
219 PF05667 DUF812: Protein of un 89.5 4.2 9E-05 42.7 11.6 9 459-467 424-432 (594)
220 KOG0310 Conserved WD40 repeat- 89.5 6.9 0.00015 38.9 12.2 110 90-221 77-186 (487)
221 TIGR03075 PQQ_enz_alc_DH PQQ-d 89.5 30 0.00064 36.2 23.0 114 45-176 79-199 (527)
222 COG3074 Uncharacterized protei 89.5 5.7 0.00012 27.9 8.5 11 462-472 61-71 (79)
223 PF09755 DUF2046: Uncharacteri 89.4 11 0.00023 35.7 12.9 10 462-471 157-166 (310)
224 KOG0980 Actin-binding protein 89.4 5.8 0.00013 42.5 12.2 29 407-435 429-457 (980)
225 PLN00181 protein SPA1-RELATED; 89.3 39 0.00085 37.4 24.9 101 93-221 545-650 (793)
226 PF06433 Me-amine-dh_H: Methyl 89.3 22 0.00047 34.4 18.2 120 31-174 4-132 (342)
227 PF10168 Nup88: Nuclear pore c 89.3 3.3 7.2E-05 44.6 11.0 45 402-446 579-623 (717)
228 TIGR03017 EpsF chain length de 89.3 3.6 7.8E-05 42.0 11.0 38 434-471 315-352 (444)
229 PRK15422 septal ring assembly 89.2 6.6 0.00014 28.6 8.8 18 458-475 57-74 (79)
230 PF10267 Tmemb_cc2: Predicted 89.2 6.1 0.00013 39.0 11.8 21 426-446 247-267 (395)
231 PHA02562 46 endonuclease subun 89.2 5.2 0.00011 42.2 12.5 10 383-392 301-310 (562)
232 PRK02224 chromosome segregatio 89.0 4 8.6E-05 45.8 12.0 10 95-104 25-34 (880)
233 PRK11028 6-phosphogluconolacto 89.0 23 0.0005 34.3 20.9 146 94-270 3-157 (330)
234 COG1196 Smc Chromosome segrega 88.9 5.4 0.00012 46.1 13.2 6 294-299 638-643 (1163)
235 PF10234 Cluap1: Clusterin-ass 88.9 5.8 0.00013 36.9 10.7 40 403-442 177-216 (267)
236 KOG1003 Actin filament-coating 88.9 15 0.00033 32.0 12.4 67 385-451 8-74 (205)
237 COG1842 PspA Phage shock prote 88.8 12 0.00025 34.1 12.5 42 383-424 33-74 (225)
238 PF14282 FlxA: FlxA-like prote 88.7 1.4 3.1E-05 34.8 5.9 15 403-417 20-34 (106)
239 KOG4643 Uncharacterized coiled 88.5 4.1 8.9E-05 44.2 10.6 44 383-426 179-222 (1195)
240 PHA02562 46 endonuclease subun 88.5 6 0.00013 41.7 12.4 9 383-391 308-316 (562)
241 KOG0977 Nuclear envelope prote 88.5 2.5 5.4E-05 43.3 8.8 74 407-480 294-368 (546)
242 PF10226 DUF2216: Uncharacteri 88.4 13 0.00028 32.2 11.5 16 374-389 16-31 (195)
243 PF03962 Mnd1: Mnd1 family; I 88.3 2.9 6.3E-05 36.9 8.2 13 442-454 115-127 (188)
244 KOG1962 B-cell receptor-associ 88.2 2.9 6.3E-05 37.3 8.0 25 433-457 154-178 (216)
245 KOG4460 Nuclear pore complex, 88.1 9.8 0.00021 38.5 12.2 55 402-456 588-642 (741)
246 KOG1003 Actin filament-coating 88.0 17 0.00037 31.7 12.3 41 417-457 82-122 (205)
247 TIGR02680 conserved hypothetic 88.0 4.2 9.1E-05 47.6 11.5 46 411-456 278-323 (1353)
248 PF06005 DUF904: Protein of un 88.0 7.1 0.00015 28.3 8.5 16 461-476 53-68 (72)
249 PF05335 DUF745: Protein of un 87.9 18 0.00039 31.8 13.4 27 402-428 67-93 (188)
250 PF04849 HAP1_N: HAP1 N-termin 87.9 9.3 0.0002 36.1 11.6 54 404-457 215-268 (306)
251 KOG2048 WD40 repeat protein [G 87.9 31 0.00066 36.0 15.9 126 129-276 423-558 (691)
252 PF12777 MT: Microtubule-bindi 87.9 4.3 9.4E-05 39.8 10.0 32 402-433 15-46 (344)
253 KOG1103 Predicted coiled-coil 87.8 4 8.7E-05 38.5 9.0 8 386-393 144-151 (561)
254 COG1382 GimC Prefoldin, chaper 87.8 13 0.00028 29.8 11.1 12 466-477 96-107 (119)
255 cd00094 HX Hemopexin-like repe 87.7 19 0.00042 31.9 17.4 154 139-326 12-178 (194)
256 KOG0612 Rho-associated, coiled 87.7 6.1 0.00013 43.9 11.5 35 425-459 496-530 (1317)
257 KOG2391 Vacuolar sorting prote 87.7 4.4 9.5E-05 38.4 9.2 53 400-452 230-282 (365)
258 PF06637 PV-1: PV-1 protein (P 87.6 14 0.00031 35.6 12.5 17 459-475 361-377 (442)
259 PRK09841 cryptic autophosphory 87.5 4.1 8.8E-05 44.5 10.5 29 443-471 352-380 (726)
260 KOG0964 Structural maintenance 87.5 7.4 0.00016 42.3 11.7 21 458-478 353-373 (1200)
261 KOG3838 Mannose lectin ERGIC-5 87.4 1.9 4.1E-05 41.5 6.7 18 466-483 331-348 (497)
262 PRK01742 tolB translocation pr 87.4 36 0.00077 34.5 20.9 140 45-227 228-369 (429)
263 PRK09174 F0F1 ATP synthase sub 87.3 18 0.00039 32.4 12.7 44 385-428 81-124 (204)
264 COG1520 FOG: WD40-like repeat 87.3 32 0.0007 34.0 18.4 139 46-225 79-225 (370)
265 PF10481 CENP-F_N: Cenp-F N-te 87.2 5 0.00011 36.7 9.0 18 458-475 113-130 (307)
266 PF13870 DUF4201: Domain of un 87.2 19 0.00042 31.4 13.4 23 459-481 150-172 (177)
267 PF07926 TPR_MLP1_2: TPR/MLP1/ 87.2 16 0.00034 30.2 13.3 33 424-456 60-92 (132)
268 cd00200 WD40 WD40 domain, foun 87.1 23 0.00051 32.2 25.5 146 93-272 105-252 (289)
269 KOG0976 Rho/Rac1-interacting s 87.0 7.6 0.00016 41.1 11.2 15 405-419 333-347 (1265)
270 PRK06231 F0F1 ATP synthase sub 87.0 22 0.00047 31.9 13.2 48 384-431 75-122 (205)
271 PRK11546 zraP zinc resistance 86.9 5.8 0.00013 33.0 8.5 14 439-452 91-104 (143)
272 PRK13454 F0F1 ATP synthase sub 86.9 21 0.00045 31.3 13.1 45 385-429 59-103 (181)
273 PF06818 Fez1: Fez1; InterPro 86.9 14 0.00031 32.7 11.4 92 383-477 12-103 (202)
274 COG1382 GimC Prefoldin, chaper 86.9 7.1 0.00015 31.2 8.7 16 402-417 27-42 (119)
275 KOG4673 Transcription factor T 86.9 11 0.00024 39.2 12.1 38 436-473 579-624 (961)
276 COG4257 Vgb Streptogramin lyas 86.8 27 0.00058 32.5 16.7 60 159-226 253-312 (353)
277 PRK03947 prefoldin subunit alp 86.7 13 0.00029 30.9 11.1 22 458-479 112-133 (140)
278 PF02897 Peptidase_S9_N: Proly 86.7 23 0.0005 35.6 15.0 149 44-226 251-411 (414)
279 PF02841 GBP_C: Guanylate-bind 86.7 11 0.00024 36.0 11.9 13 413-425 194-206 (297)
280 PF12329 TMF_DNA_bd: TATA elem 86.6 6.1 0.00013 28.8 7.7 38 415-452 11-48 (74)
281 KOG0946 ER-Golgi vesicle-tethe 86.5 13 0.00029 39.5 12.7 43 403-445 672-714 (970)
282 KOG0999 Microtubule-associated 86.5 15 0.00032 37.3 12.5 108 375-482 9-135 (772)
283 PF12761 End3: Actin cytoskele 86.5 8.4 0.00018 33.8 9.7 14 373-386 95-108 (195)
284 PF13863 DUF4200: Domain of un 86.5 16 0.00035 29.7 12.2 25 454-478 81-105 (126)
285 PF04012 PspA_IM30: PspA/IM30 86.5 19 0.0004 32.8 12.8 48 379-426 28-75 (221)
286 KOG4360 Uncharacterized coiled 86.4 13 0.00028 37.3 12.0 44 411-454 207-250 (596)
287 PF10205 KLRAQ: Predicted coil 86.4 8.1 0.00018 29.9 8.5 6 405-410 29-34 (102)
288 PF04949 Transcrip_act: Transc 86.4 17 0.00038 30.0 13.0 22 412-433 55-76 (159)
289 PF10211 Ax_dynein_light: Axon 86.4 22 0.00049 31.4 12.7 18 460-477 169-186 (189)
290 PF05911 DUF869: Plant protein 86.4 13 0.00028 40.3 13.1 42 383-424 598-639 (769)
291 PF14988 DUF4515: Domain of un 85.9 26 0.00056 31.5 13.3 38 440-477 81-123 (206)
292 PF15070 GOLGA2L5: Putative go 85.8 8.9 0.00019 40.5 11.4 52 379-430 85-136 (617)
293 PRK10780 periplasmic chaperone 85.7 16 0.00034 31.6 11.2 22 406-427 47-68 (165)
294 PF14817 HAUS5: HAUS augmin-li 85.5 14 0.00029 39.2 12.5 83 389-471 80-162 (632)
295 KOG0979 Structural maintenance 85.5 9.6 0.00021 41.6 11.4 57 402-458 643-699 (1072)
296 COG1340 Uncharacterized archae 85.2 22 0.00047 33.5 12.3 30 383-412 71-100 (294)
297 PF06476 DUF1090: Protein of u 85.1 14 0.0003 29.6 9.7 43 436-478 69-113 (115)
298 PF14182 YgaB: YgaB-like prote 85.0 6.7 0.00014 28.5 6.9 44 432-476 19-62 (79)
299 PF15233 SYCE1: Synaptonemal c 85.0 19 0.0004 29.1 11.2 57 379-435 11-67 (134)
300 PF07106 TBPIP: Tat binding pr 85.0 6.1 0.00013 34.3 8.4 55 403-457 80-136 (169)
301 KOG1937 Uncharacterized conser 85.0 20 0.00043 35.5 12.3 25 454-478 403-427 (521)
302 KOG3091 Nuclear pore complex, 84.9 20 0.00043 36.1 12.5 19 423-441 376-394 (508)
303 TIGR03545 conserved hypothetic 84.9 5.4 0.00012 41.6 9.3 19 458-476 241-259 (555)
304 PF07058 Myosin_HC-like: Myosi 84.9 8.2 0.00018 36.0 9.2 23 458-480 63-85 (351)
305 CHL00118 atpG ATP synthase CF0 84.9 23 0.00051 30.1 13.1 45 384-428 49-93 (156)
306 KOG1899 LAR transmembrane tyro 84.9 13 0.00028 38.3 11.4 17 377-393 107-123 (861)
307 PTZ00421 coronin; Provisional 84.8 52 0.0011 34.1 19.1 64 144-222 138-201 (493)
308 PF03938 OmpH: Outer membrane 84.8 10 0.00022 32.3 9.8 11 415-425 49-59 (158)
309 PF14723 SSFA2_C: Sperm-specif 84.7 6.3 0.00014 33.4 7.8 12 410-421 113-124 (179)
310 PF12777 MT: Microtubule-bindi 84.7 4.8 0.0001 39.4 8.5 57 396-452 208-264 (344)
311 PF05266 DUF724: Protein of un 84.6 12 0.00027 33.0 10.1 50 429-478 123-176 (190)
312 PF09738 DUF2051: Double stran 84.5 21 0.00045 34.1 12.2 22 451-472 144-165 (302)
313 PF15525 DUF4652: Domain of un 84.3 27 0.00059 30.4 11.9 68 157-227 85-156 (200)
314 PF03938 OmpH: Outer membrane 84.3 11 0.00025 32.0 9.8 9 411-419 52-60 (158)
315 PF10146 zf-C4H2: Zinc finger- 84.1 33 0.00073 31.3 13.3 16 458-473 85-100 (230)
316 KOG4571 Activating transcripti 84.1 5.7 0.00012 36.9 7.9 40 424-463 249-288 (294)
317 KOG0964 Structural maintenance 84.1 13 0.00029 40.4 11.6 77 405-481 414-494 (1200)
318 PRK11519 tyrosine kinase; Prov 83.9 9.7 0.00021 41.5 11.2 6 490-495 405-410 (719)
319 KOG0249 LAR-interacting protei 83.7 17 0.00036 38.2 11.7 45 430-474 209-257 (916)
320 COG3206 GumC Uncharacterized p 83.7 7.5 0.00016 39.8 9.8 36 436-471 348-383 (458)
321 KOG4378 Nuclear protein COP1 [ 83.7 29 0.00062 34.9 12.9 89 212-323 188-280 (673)
322 PF10267 Tmemb_cc2: Predicted 83.7 13 0.00028 36.8 10.7 14 461-474 305-318 (395)
323 KOG4661 Hsp27-ERE-TATA-binding 83.6 18 0.00038 36.8 11.6 16 431-446 640-655 (940)
324 PF12004 DUF3498: Domain of un 83.5 0.35 7.5E-06 48.9 0.0 29 403-431 377-405 (495)
325 PRK13453 F0F1 ATP synthase sub 83.5 29 0.00063 30.1 13.1 47 384-430 45-91 (173)
326 KOG1899 LAR transmembrane tyro 83.4 15 0.00033 37.8 11.2 17 383-399 134-150 (861)
327 PRK03947 prefoldin subunit alp 83.3 24 0.00052 29.4 11.1 23 435-457 99-121 (140)
328 KOG1332 Vesicle coat complex C 83.3 27 0.00059 31.9 11.5 57 264-331 238-295 (299)
329 PF10174 Cast: RIM-binding pro 83.3 17 0.00036 39.5 12.3 20 403-422 344-363 (775)
330 PRK13460 F0F1 ATP synthase sub 83.3 30 0.00065 30.1 13.1 46 385-430 44-89 (173)
331 KOG0933 Structural maintenance 83.2 19 0.0004 39.5 12.2 7 305-311 661-667 (1174)
332 KOG0288 WD40 repeat protein Ti 83.1 17 0.00036 35.6 10.9 42 393-434 32-73 (459)
333 KOG3859 Septins (P-loop GTPase 83.1 18 0.00038 33.7 10.6 14 458-471 388-401 (406)
334 KOG0933 Structural maintenance 83.0 21 0.00046 39.1 12.5 17 417-433 788-804 (1174)
335 smart00284 OLF Olfactomedin-li 82.9 40 0.00087 31.3 16.8 165 143-326 34-211 (255)
336 PF05622 HOOK: HOOK protein; 82.9 0.38 8.3E-06 52.2 0.0 75 383-457 248-328 (713)
337 PRK14472 F0F1 ATP synthase sub 82.8 31 0.00068 30.0 13.2 47 384-430 45-91 (175)
338 PF05335 DUF745: Protein of un 82.6 30 0.00066 30.4 11.6 95 384-478 70-168 (188)
339 PF06156 DUF972: Protein of un 82.6 4.6 0.0001 31.9 5.9 35 406-440 19-53 (107)
340 TIGR02977 phageshock_pspA phag 82.6 25 0.00053 32.0 11.7 42 383-424 33-74 (219)
341 KOG1937 Uncharacterized conser 82.5 17 0.00037 36.0 10.7 19 406-424 297-315 (521)
342 PF07106 TBPIP: Tat binding pr 82.5 10 0.00022 32.8 8.8 60 383-442 74-135 (169)
343 KOG4005 Transcription factor X 82.5 37 0.00079 30.5 11.9 45 411-455 92-136 (292)
344 PF05266 DUF724: Protein of un 82.4 14 0.00031 32.6 9.6 25 454-478 159-183 (190)
345 PRK13684 Ycf48-like protein; P 82.3 51 0.0011 32.1 21.3 140 111-278 154-297 (334)
346 KOG1144 Translation initiation 82.3 6.7 0.00015 41.5 8.5 8 482-489 298-305 (1064)
347 CHL00019 atpF ATP synthase CF0 82.3 34 0.00074 30.1 13.2 44 385-428 52-95 (184)
348 KOG3647 Predicted coiled-coil 82.3 32 0.0007 31.5 11.7 46 379-424 110-155 (338)
349 TIGR00634 recN DNA repair prot 82.2 6.1 0.00013 41.7 8.6 13 444-456 329-341 (563)
350 PRK14474 F0F1 ATP synthase sub 82.1 42 0.00092 31.2 13.2 40 385-424 33-72 (250)
351 PRK10803 tol-pal system protei 82.0 7.3 0.00016 36.5 8.2 32 431-462 62-93 (263)
352 PF10498 IFT57: Intra-flagella 81.9 35 0.00075 33.6 13.0 41 411-451 261-301 (359)
353 PF12004 DUF3498: Domain of un 81.9 0.44 9.5E-06 48.2 0.0 14 379-392 374-387 (495)
354 TIGR01005 eps_transp_fam exopo 81.8 12 0.00026 41.2 11.1 85 400-484 321-406 (754)
355 PRK02119 hypothetical protein; 81.8 9.7 0.00021 27.7 7.0 14 463-476 39-52 (73)
356 KOG0240 Kinesin (SMY1 subfamil 81.7 25 0.00054 36.0 12.0 9 92-100 37-45 (607)
357 COG1730 GIM5 Predicted prefold 81.7 28 0.0006 29.2 10.4 24 458-481 112-135 (145)
358 KOG0977 Nuclear envelope prote 81.5 16 0.00034 37.6 10.7 21 432-452 157-177 (546)
359 PRK07352 F0F1 ATP synthase sub 81.4 35 0.00077 29.6 13.2 49 383-431 45-93 (174)
360 PF15358 TSKS: Testis-specific 81.4 10 0.00022 36.8 8.7 28 425-452 162-189 (558)
361 TIGR02338 gimC_beta prefoldin, 81.2 13 0.00029 29.5 8.4 70 417-486 4-106 (110)
362 KOG0982 Centrosomal protein Nu 81.2 43 0.00093 33.0 12.8 8 411-418 306-313 (502)
363 PF07851 TMPIT: TMPIT-like pro 81.1 14 0.00029 35.6 9.6 11 436-446 45-55 (330)
364 TIGR03545 conserved hypothetic 81.1 18 0.00039 37.8 11.4 15 402-416 191-205 (555)
365 PRK10698 phage shock protein P 81.0 33 0.00071 31.2 11.8 45 381-425 31-75 (222)
366 TIGR00606 rad50 rad50. This fa 81.0 15 0.00032 43.2 11.9 38 429-466 230-267 (1311)
367 KOG3990 Uncharacterized conser 81.0 8.1 0.00018 34.8 7.4 16 383-398 227-242 (305)
368 PF15358 TSKS: Testis-specific 81.0 7.6 0.00017 37.6 7.8 89 383-471 141-231 (558)
369 PRK14011 prefoldin subunit alp 81.0 27 0.00058 29.3 10.2 13 405-417 20-32 (144)
370 PRK15335 type III secretion sy 80.9 26 0.00057 28.1 9.4 33 387-419 29-61 (147)
371 PF05278 PEARLI-4: Arabidopsis 80.8 36 0.00078 31.6 11.8 34 420-453 197-230 (269)
372 KOG3433 Protein involved in me 80.7 25 0.00055 30.2 9.9 56 383-438 76-131 (203)
373 PF02388 FemAB: FemAB family; 80.7 3.9 8.5E-05 41.1 6.3 50 436-485 248-297 (406)
374 PF14362 DUF4407: Domain of un 80.5 23 0.00049 34.0 11.3 32 403-434 136-167 (301)
375 TIGR02894 DNA_bind_RsfA transc 80.5 22 0.00048 30.1 9.4 19 428-446 109-127 (161)
376 TIGR01000 bacteriocin_acc bact 80.2 24 0.00052 36.2 12.0 18 461-478 291-308 (457)
377 PF03178 CPSF_A: CPSF A subuni 80.1 59 0.0013 31.4 15.6 122 109-253 62-190 (321)
378 PF13870 DUF4201: Domain of un 80.1 29 0.00063 30.3 10.9 23 433-455 80-102 (177)
379 TIGR03007 pepcterm_ChnLen poly 80.0 25 0.00054 36.5 12.3 60 421-480 322-381 (498)
380 PF14870 PSII_BNR: Photosynthe 80.0 58 0.0013 31.2 24.0 256 11-332 4-270 (302)
381 KOG4848 Extracellular matrix-a 79.9 39 0.00085 29.2 11.3 7 303-309 54-60 (225)
382 PRK05689 fliJ flagellar biosyn 79.7 25 0.00054 29.5 10.1 22 436-457 77-98 (147)
383 PRK09343 prefoldin subunit bet 79.7 16 0.00035 29.6 8.4 75 412-486 3-110 (121)
384 TIGR03321 alt_F1F0_F0_B altern 79.5 52 0.0011 30.4 13.2 42 385-426 33-74 (246)
385 PF08657 DASH_Spc34: DASH comp 79.5 6.5 0.00014 36.6 6.8 34 402-435 180-213 (259)
386 KOG4643 Uncharacterized coiled 79.4 35 0.00075 37.5 12.6 20 457-476 581-600 (1195)
387 PRK07353 F0F1 ATP synthase sub 79.3 35 0.00076 28.3 13.1 48 383-430 31-78 (140)
388 COG2706 3-carboxymuconate cycl 79.2 63 0.0014 31.2 26.7 173 31-234 53-238 (346)
389 KOG0978 E3 ubiquitin ligase in 79.2 23 0.0005 37.6 11.3 7 472-478 605-611 (698)
390 PRK13428 F0F1 ATP synthase sub 79.0 35 0.00076 34.8 12.5 40 386-425 30-69 (445)
391 KOG0018 Structural maintenance 79.0 26 0.00057 38.7 11.7 46 400-445 709-754 (1141)
392 COG1730 GIM5 Predicted prefold 79.0 37 0.00081 28.4 12.4 28 430-457 94-121 (145)
393 PRK13169 DNA replication intia 79.0 7.8 0.00017 30.7 6.1 39 403-441 16-54 (110)
394 PRK11519 tyrosine kinase; Prov 78.8 22 0.00047 38.9 11.7 31 441-471 350-380 (719)
395 PRK13455 F0F1 ATP synthase sub 78.7 45 0.00098 29.3 12.7 45 386-430 56-100 (184)
396 KOG0243 Kinesin-like protein [ 78.6 35 0.00075 38.0 12.7 101 377-477 451-551 (1041)
397 KOG4572 Predicted DNA-binding 78.5 17 0.00037 38.6 9.9 106 379-485 966-1083(1424)
398 PF09789 DUF2353: Uncharacteri 78.5 56 0.0012 31.4 12.7 100 379-478 14-150 (319)
399 KOG3215 Uncharacterized conser 78.5 41 0.0009 29.6 10.7 96 390-486 63-181 (222)
400 PF07889 DUF1664: Protein of u 78.5 24 0.00051 28.8 8.9 77 391-467 50-126 (126)
401 KOG4661 Hsp27-ERE-TATA-binding 78.4 28 0.00061 35.5 11.0 97 387-483 596-692 (940)
402 TIGR02132 phaR_Bmeg polyhydrox 78.2 13 0.00028 31.8 7.4 95 394-488 71-170 (189)
403 PF05911 DUF869: Plant protein 78.1 28 0.0006 37.9 11.8 105 379-483 594-702 (769)
404 PF10205 KLRAQ: Predicted coil 77.9 30 0.00066 26.8 9.0 74 384-457 1-74 (102)
405 PRK05759 F0F1 ATP synthase sub 77.8 42 0.00092 28.4 13.1 95 383-477 30-127 (156)
406 PF05064 Nsp1_C: Nsp1-like C-t 77.8 2.4 5.3E-05 34.1 3.1 87 391-477 18-104 (116)
407 PF10174 Cast: RIM-binding pro 77.7 35 0.00076 37.2 12.5 110 377-486 339-461 (775)
408 PF08781 DP: Transcription fac 77.7 12 0.00025 31.2 7.0 47 423-469 1-47 (142)
409 KOG4674 Uncharacterized conser 77.7 33 0.00072 40.6 12.8 104 378-481 1233-1341(1822)
410 TIGR02977 phageshock_pspA phag 77.6 47 0.001 30.1 11.8 101 383-483 19-128 (219)
411 PF05008 V-SNARE: Vesicle tran 77.6 26 0.00055 25.8 8.5 74 404-479 5-79 (79)
412 KOG2896 UV radiation resistanc 77.5 72 0.0016 30.9 13.3 116 383-499 87-203 (377)
413 PF11068 YlqD: YlqD protein; 77.5 22 0.00048 29.2 8.6 73 412-484 16-90 (131)
414 TIGR02231 conserved hypothetic 77.5 21 0.00046 37.3 10.8 86 403-488 72-179 (525)
415 KOG0982 Centrosomal protein Nu 77.4 55 0.0012 32.3 12.3 97 384-480 279-375 (502)
416 PF05262 Borrelia_P83: Borreli 77.4 14 0.00029 37.8 8.8 92 394-485 205-296 (489)
417 PLN00033 photosystem II stabil 77.3 83 0.0018 31.5 20.2 211 13-252 166-388 (398)
418 KOG0963 Transcription factor/C 77.3 34 0.00075 35.5 11.5 128 360-487 100-275 (629)
419 PRK11281 hypothetical protein; 77.2 28 0.00061 39.7 12.0 111 380-490 58-185 (1113)
420 KOG2751 Beclin-like protein [S 77.1 29 0.00063 34.3 10.5 106 377-482 146-267 (447)
421 PF09744 Jnk-SapK_ap_N: JNK_SA 77.1 32 0.0007 29.3 9.7 104 383-486 38-142 (158)
422 PF06160 EzrA: Septation ring 77.1 27 0.00058 36.9 11.3 103 377-479 347-462 (560)
423 TIGR02338 gimC_beta prefoldin, 77.0 35 0.00076 27.1 10.6 92 379-470 1-107 (110)
424 PF07200 Mod_r: Modifier of ru 76.8 44 0.00096 28.1 10.8 81 397-477 29-115 (150)
425 PF05529 Bap31: B-cell recepto 76.7 18 0.00039 32.1 8.7 72 402-476 118-190 (192)
426 KOG4460 Nuclear pore complex, 76.7 61 0.0013 33.1 12.7 101 384-484 584-703 (741)
427 KOG2010 Double stranded RNA bi 76.6 12 0.00026 35.2 7.4 60 403-462 148-207 (405)
428 PF04799 Fzo_mitofusin: fzo-li 76.6 18 0.00038 31.1 7.9 64 420-483 102-166 (171)
429 PF08581 Tup_N: Tup N-terminal 76.5 28 0.00061 25.7 10.1 78 406-484 1-79 (79)
430 KOG4005 Transcription factor X 76.5 55 0.0012 29.5 11.1 91 387-478 55-149 (292)
431 PF15290 Syntaphilin: Golgi-lo 76.5 52 0.0011 30.5 11.3 89 383-471 70-169 (305)
432 KOG0612 Rho-associated, coiled 76.5 40 0.00086 38.0 12.4 110 376-486 583-698 (1317)
433 TIGR03495 phage_LysB phage lys 76.5 16 0.00035 30.1 7.5 82 417-499 20-101 (135)
434 PF14583 Pectate_lyase22: Olig 76.4 83 0.0018 31.1 18.5 251 31-325 49-330 (386)
435 PRK00846 hypothetical protein; 76.4 19 0.00041 26.4 7.0 60 398-457 2-61 (77)
436 KOG2048 WD40 repeat protein [G 76.3 1.1E+02 0.0023 32.3 20.8 234 33-326 260-508 (691)
437 PRK04406 hypothetical protein; 76.3 15 0.00033 26.8 6.6 57 401-457 3-59 (75)
438 COG3206 GumC Uncharacterized p 76.2 26 0.00057 35.9 10.9 100 383-482 287-387 (458)
439 PF03961 DUF342: Protein of un 76.2 12 0.00025 38.3 8.3 67 420-486 331-407 (451)
440 PF14073 Cep57_CLD: Centrosome 76.2 51 0.0011 28.5 11.3 108 377-484 7-136 (178)
441 KOG4571 Activating transcripti 76.1 15 0.00032 34.3 7.8 65 394-458 225-290 (294)
442 PF15397 DUF4618: Domain of un 76.1 67 0.0014 29.8 12.4 94 384-477 63-165 (258)
443 PF10146 zf-C4H2: Zinc finger- 76.0 63 0.0014 29.5 12.5 102 376-477 3-105 (230)
444 PF14197 Cep57_CLD_2: Centroso 76.0 26 0.00057 25.1 8.8 65 419-483 1-69 (69)
445 PRK00295 hypothetical protein; 75.9 16 0.00034 26.2 6.5 51 407-457 3-53 (68)
446 KOG0240 Kinesin (SMY1 subfamil 75.9 29 0.00062 35.7 10.4 105 386-490 405-509 (607)
447 PF14197 Cep57_CLD_2: Centroso 75.8 27 0.00058 25.1 8.1 65 393-457 3-67 (69)
448 PF02090 SPAM: Salmonella surf 75.7 44 0.00095 27.5 13.0 101 380-480 22-146 (147)
449 KOG4809 Rab6 GTPase-interactin 75.6 42 0.00092 34.2 11.3 110 377-486 334-453 (654)
450 PF05701 WEMBL: Weak chloropla 75.5 45 0.00097 34.8 12.4 99 383-481 283-385 (522)
451 PF05377 FlaC_arch: Flagella a 75.4 8.2 0.00018 26.1 4.5 40 410-449 1-40 (55)
452 PRK10476 multidrug resistance 75.2 52 0.0011 32.2 12.4 110 377-486 89-208 (346)
453 KOG4360 Uncharacterized coiled 75.2 43 0.00093 33.9 11.2 94 377-470 208-301 (596)
454 PF10805 DUF2730: Protein of u 75.1 24 0.00052 27.8 8.0 67 401-467 34-102 (106)
455 PRK00736 hypothetical protein; 75.0 15 0.00033 26.3 6.2 51 407-457 3-53 (68)
456 PRK08475 F0F1 ATP synthase sub 75.0 54 0.0012 28.3 13.3 97 383-479 48-149 (167)
457 PF10046 BLOC1_2: Biogenesis o 74.9 37 0.00081 26.3 10.0 76 407-482 5-80 (99)
458 PLN00033 photosystem II stabil 74.8 97 0.0021 31.1 23.3 227 55-331 120-364 (398)
459 PF10828 DUF2570: Protein of u 74.8 29 0.00063 27.6 8.5 66 391-456 21-86 (110)
460 PF02090 SPAM: Salmonella surf 74.8 46 0.001 27.4 9.8 85 394-478 22-111 (147)
461 KOG2991 Splicing regulator [RN 74.8 64 0.0014 29.5 11.2 111 367-477 94-245 (330)
462 PTZ00121 MAEBL; Provisional 74.6 33 0.00072 39.4 11.2 112 382-493 1168-1279(2084)
463 PRK02793 phi X174 lysis protei 74.6 15 0.00034 26.6 6.2 55 403-457 2-56 (72)
464 KOG0978 E3 ubiquitin ligase in 74.5 53 0.0011 35.1 12.3 114 377-490 499-623 (698)
465 KOG4552 Vitamin-D-receptor int 74.4 60 0.0013 28.5 10.7 92 390-481 10-101 (272)
466 KOG2072 Translation initiation 74.4 71 0.0015 34.5 13.0 101 381-483 568-692 (988)
467 PRK04325 hypothetical protein; 74.3 16 0.00035 26.6 6.3 53 405-457 5-57 (74)
468 PRK06800 fliH flagellar assemb 74.3 37 0.00079 29.3 9.1 72 412-483 30-102 (228)
469 KOG0946 ER-Golgi vesicle-tethe 74.3 31 0.00068 36.9 10.5 101 387-487 642-763 (970)
470 PF03961 DUF342: Protein of un 74.3 17 0.00038 37.1 9.0 70 411-480 329-408 (451)
471 KOG3091 Nuclear pore complex, 74.0 17 0.00037 36.5 8.2 104 375-478 349-452 (508)
472 PRK10115 protease 2; Provision 73.9 1.4E+02 0.003 32.5 24.5 261 31-336 139-407 (686)
473 PF04201 TPD52: Tumour protein 73.8 23 0.00049 30.1 7.8 65 408-472 28-97 (162)
474 PF07798 DUF1640: Protein of u 73.8 61 0.0013 28.3 11.3 88 390-483 46-135 (177)
475 TIGR01010 BexC_CtrB_KpsE polys 73.7 31 0.00068 34.0 10.4 77 401-477 169-265 (362)
476 KOG0999 Microtubule-associated 73.6 56 0.0012 33.4 11.6 104 379-482 105-208 (772)
477 PF04012 PspA_IM30: PspA/IM30 73.6 71 0.0015 28.9 12.2 103 384-486 26-130 (221)
478 TIGR02473 flagell_FliJ flagell 73.6 46 0.00099 27.5 10.0 78 406-483 3-97 (141)
479 PRK01156 chromosome segregatio 73.5 51 0.0011 37.2 13.2 100 383-482 178-277 (895)
480 KOG4593 Mitotic checkpoint pro 73.5 54 0.0012 34.6 11.9 104 375-478 166-275 (716)
481 PF04880 NUDE_C: NUDE protein, 73.5 6.5 0.00014 33.7 4.6 61 424-485 1-61 (166)
482 PRK04406 hypothetical protein; 73.4 18 0.00039 26.5 6.3 57 394-450 3-59 (75)
483 PRK10780 periplasmic chaperone 73.4 25 0.00055 30.2 8.5 89 397-486 31-119 (165)
484 PF15254 CCDC14: Coiled-coil d 73.3 68 0.0015 34.4 12.6 102 379-480 392-506 (861)
485 PF03148 Tektin: Tektin family 73.1 56 0.0012 32.6 11.9 94 379-472 249-359 (384)
486 KOG4657 Uncharacterized conser 73.0 70 0.0015 28.7 12.1 104 384-488 40-144 (246)
487 PF14870 PSII_BNR: Photosynthe 73.0 90 0.002 29.9 18.7 197 55-307 91-293 (302)
488 PF09910 DUF2139: Uncharacteri 72.8 32 0.0007 32.4 9.2 94 4-119 132-232 (339)
489 PF08912 Rho_Binding: Rho Bind 72.7 20 0.00044 25.5 6.1 56 407-462 1-56 (69)
490 PRK09343 prefoldin subunit bet 72.6 50 0.0011 26.8 10.9 92 379-470 5-111 (121)
491 PF07889 DUF1664: Protein of u 72.5 51 0.0011 26.9 11.1 89 390-481 38-126 (126)
492 PF14257 DUF4349: Domain of un 72.5 11 0.00024 35.4 6.5 87 395-483 105-191 (262)
493 PF01920 Prefoldin_2: Prefoldi 72.3 44 0.00095 26.0 9.4 72 419-490 1-105 (106)
494 PRK10476 multidrug resistance 72.2 60 0.0013 31.8 12.0 113 374-486 79-201 (346)
495 PF05837 CENP-H: Centromere pr 72.1 25 0.00053 27.8 7.4 73 407-483 1-73 (106)
496 PRK10929 putative mechanosensi 72.0 44 0.00095 38.1 11.8 108 379-486 178-290 (1109)
497 KOG0709 CREB/ATF family transc 71.9 11 0.00023 37.6 6.3 75 387-462 244-318 (472)
498 KOG4603 TBP-1 interacting prot 71.9 38 0.00082 28.8 8.5 61 422-482 78-144 (201)
499 PF07111 HCR: Alpha helical co 71.7 89 0.0019 33.2 12.9 104 375-478 472-584 (739)
500 PRK02793 phi X174 lysis protei 71.6 29 0.00063 25.1 7.1 52 433-484 4-59 (72)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2.9e-43 Score=357.12 Aligned_cols=304 Identities=20% Similarity=0.294 Sum_probs=249.2
Q ss_pred CCccccCCC----CCeEEcccCCCCCCcccc--------eEEEEcCCCC-C-cccCcEEEEEcCCCceEEeeeCcccccC
Q 010847 4 GSWHLELPY----DLWVTLPVSGARPSPRYK--------KLYIVGGSRN-G-RFLSDVQVFDLRSLAWSNLRLETELDAD 69 (499)
Q Consensus 4 ~~~~~~~~~----~~W~~~~~~~~~p~~r~~--------~l~~~GG~~~-~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~ 69 (499)
+.+.++|.+ ++|..++..+..|.||++ +||||||... . ...+++++||+.+++|+.++++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g----- 212 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG----- 212 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCC-----
Confidence 455667755 899999987778999987 9999999743 2 34578999999999999877653
Q ss_pred ccccCCCCCCCC-CccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEE
Q 010847 70 KTEDSGLLEVLP-PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLII 148 (499)
Q Consensus 70 ~~~~~~~~~~p~-~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv 148 (499)
..|. .|.+|++++++++||+|||..... .++++++||+.+++|+.+++.+..|.+|.+|++++++++||+
T Consensus 213 --------~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv 283 (470)
T PLN02193 213 --------DVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV 283 (470)
T ss_pred --------CCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE
Confidence 2233 467999999999999999987654 378899999999999999855555899999999999999999
Q ss_pred EcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847 149 FGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228 (499)
Q Consensus 149 ~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 228 (499)
|||.+... ..+++++||+.+++|+.+++.+.+|.+|.+|+++.+++ +||++||.++. .++++++||+.+++|+.+..
T Consensus 284 ~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-kiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 284 FGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-KVWVVYGFNGC-EVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred ECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-cEEEEECCCCC-ccCceEEEECCCCEEEEecc
Confidence 99987654 47899999999999999987667788999999998855 59999998643 47899999999999999876
Q ss_pred CCCCCCcCcccEEEEECCEEEEEeCCCCC---------CCcceEEEEECCCCceEEeccCCC--CCCCCCCCCceEEEEE
Q 010847 229 KGDLVTGRAGHAGITIDENWYIVGGGDNN---------NGCQETIVLNMTKLAWSILTSVKG--RNPLASEGLSVCSAII 297 (499)
Q Consensus 229 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~l~~~~~--~~p~~~~~~~~~~~~~ 297 (499)
.+..|.+|..|+++.++++||||||.... ...+++|+||+.+++|+.++.++. ..|.+|..++++...+
T Consensus 361 ~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~ 440 (470)
T PLN02193 361 FGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTI 440 (470)
T ss_pred CCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEE
Confidence 66778999999999999999999997531 135789999999999999987653 3455665555555556
Q ss_pred cCceEEEEEcCCC--CCCCceEEEEECCC
Q 010847 298 EGEHHLVAFGGYN--GKYNNEVFVMRLKP 324 (499)
Q Consensus 298 ~~~~~l~v~GG~~--~~~~~~~~~~~~~~ 324 (499)
.+++.||+|||.+ +...+|+|+|++..
T Consensus 441 ~~~~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 441 DGKKGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred cCCceEEEEcCCCCccccccceEEEecCC
Confidence 6666799999995 45689999998753
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.3e-41 Score=333.36 Aligned_cols=299 Identities=20% Similarity=0.279 Sum_probs=235.8
Q ss_pred CCCCCeEEcccCC-CCCCcccc--------eEEEEcCCCC--CcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCC
Q 010847 10 LPYDLWVTLPVSG-ARPSPRYK--------KLYIVGGSRN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLE 78 (499)
Q Consensus 10 ~~~~~W~~~~~~~-~~p~~r~~--------~l~~~GG~~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~ 78 (499)
|....|..++..+ ..|.+|.. +|||+||... ....+++++||+.+++|+.++++.. .
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~------------~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGD------------V 71 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCC------------C
Confidence 5788999998643 46888876 9999999843 3346799999999999999887632 1
Q ss_pred CCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecC--CCCCCCCcceEEEEECCEEEEEcCcCCCC
Q 010847 79 VLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETS--GKVPVARGGHSVTLVGSRLIIFGGEDRSR 156 (499)
Q Consensus 79 ~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~--g~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 156 (499)
|...+.+|++++++++||+|||...... .+++++||+.+++|+.++.. ...|.+|.+|++++++++||||||.+...
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~ 150 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGG 150 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCC
Confidence 1223558999999999999999875543 67899999999999998731 12388999999999999999999986432
Q ss_pred -----CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC--------CCCCCcEEEEECCCCce
Q 010847 157 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--------SIFFNDLHVLDLQTNEW 223 (499)
Q Consensus 157 -----~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--------~~~~~~i~~~d~~~~~W 223 (499)
..++++++||+.+++|..++.++.+|.+|.+|+++.+++ +|||+||... ....+++++||+.+++|
T Consensus 151 ~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 151 LMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG-KIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC-eEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 135789999999999999988776778999999988855 5999998642 12368899999999999
Q ss_pred EecccCCCCCCcCcccEEEEECCEEEEEeCCCC---------CCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEE
Q 010847 224 SQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN---------NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCS 294 (499)
Q Consensus 224 ~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~---------~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~ 294 (499)
+.+...+.+|.+|..|++++++++||||||... ....+++|.||+.+++|+.+..... .|.++..+.++.
T Consensus 230 ~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~-~~~pr~~~~~~~ 308 (341)
T PLN02153 230 TEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGE-PAMPRGWTAYTT 308 (341)
T ss_pred EeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCC-CCCCCccccccc
Confidence 999766778999999999999999999999632 1225799999999999999865322 233444444455
Q ss_pred EEEcCceEEEEEcCCCC--CCCceEEEEECC
Q 010847 295 AIIEGEHHLVAFGGYNG--KYNNEVFVMRLK 323 (499)
Q Consensus 295 ~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~ 323 (499)
+++.+++.|||+||.++ ...+|+|.|+..
T Consensus 309 ~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 309 ATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred cccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 56666668999999964 467899999764
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=340.49 Aligned_cols=273 Identities=23% Similarity=0.341 Sum_probs=237.6
Q ss_pred eEEEEcCCCC-CcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCc
Q 010847 31 KLYIVGGSRN-GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM 109 (499)
Q Consensus 31 ~l~~~GG~~~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~ 109 (499)
.||++||..+ ....+.+..|||.++.|..+++++ .+|..+++++++|+||++||.+......+
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~----------------~~r~~~~~~~~~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP----------------SPRCRVGVAVLNGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC----------------cccccccEEEECCEEEEEccccCCCcccc
Confidence 8999999986 778899999999999999999884 58999999999999999999985333478
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847 110 IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 189 (499)
Q Consensus 110 ~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~ 189 (499)
++++||+.+++|..++ +|+.+|.+++++++++.||++||.++.. +.+++++||+.+++|..+.+ ++.+|++|+
T Consensus 350 ~ve~YD~~~~~W~~~a---~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~---m~~~r~~~g 422 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVA---PMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAP---MLTRRSGHG 422 (571)
T ss_pred eEEEecCCCCceeccC---CccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCC---CCcceeeeE
Confidence 9999999999999998 9999999999999999999999999655 68899999999999999874 667999999
Q ss_pred EEEEcCcEEEEEcCCCCCC-CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEEC
Q 010847 190 AALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 268 (499)
Q Consensus 190 ~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~ 268 (499)
++++ +++||++||.++.. +++.+.+|||.+++|+.+ ++++.+|.+|+++++++.||++||.++......+..||+
T Consensus 423 v~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~---~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 423 VAVL-GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI---APMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EEEE-CCEEEEEcCcCCCccccceEEEEcCCCCceeec---CCcccccccceEEEECCEEEEECCccCCCccceEEEEcC
Confidence 9999 55699999988777 999999999999999997 789999999999999999999999988666778999999
Q ss_pred CCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCCCCCCcccCCchh
Q 010847 269 TKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRDIPRPKIFQSPAA 338 (499)
Q Consensus 269 ~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~W~~~~~~~~~~~ 338 (499)
.+++|+.+++++.. +.+. ..++.+ +.+|++||+++. ..+.+..||+..++|.....+...+.
T Consensus 499 ~~~~W~~v~~m~~~----rs~~--g~~~~~--~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~ 561 (571)
T KOG4441|consen 499 ETNQWTMVAPMTSP----RSAV--GVVVLG--GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRG 561 (571)
T ss_pred CCCceeEcccCccc----cccc--cEEEEC--CEEEEEecccCccccceeEEcCCCCCceeeCCCcccccc
Confidence 99999999766432 2222 223333 479999999764 67889999999999999888444433
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.9e-39 Score=329.29 Aligned_cols=303 Identities=20% Similarity=0.315 Sum_probs=237.4
Q ss_pred eEEEEcCCCCCcccCcEEEE--EcCC----CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC
Q 010847 31 KLYIVGGSRNGRFLSDVQVF--DLRS----LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK 104 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~y--d~~t----~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~ 104 (499)
+|+.|+|.... .++.+-+| ++.+ ++|..++++ +..|.+|.+|++++++++||++||....
T Consensus 122 ~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~-------------~~~P~pR~~h~~~~~~~~iyv~GG~~~~ 187 (470)
T PLN02193 122 KIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQK-------------GEGPGLRCSHGIAQVGNKIYSFGGEFTP 187 (470)
T ss_pred eEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccC-------------CCCCCCccccEEEEECCEEEEECCcCCC
Confidence 77778886543 35554444 7655 899998865 3347899999999999999999997543
Q ss_pred C-CCCceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCC
Q 010847 105 S-SDSMIVRFIDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPP 182 (499)
Q Consensus 105 ~-~~~~~~~~yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p 182 (499)
. ...+++++||+.+++|+.++..+.+|. .|.+|++++++++||+|||.+... .++++++||+.+++|+.+.+++..|
T Consensus 188 ~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 188 NQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred CCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCC
Confidence 2 234679999999999999876666665 467899999999999999987654 5799999999999999998876678
Q ss_pred CCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcce
Q 010847 183 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQE 262 (499)
Q Consensus 183 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 262 (499)
.+|..|+++.++ ++||||||.+....+++++.||+.+++|+.+...+.+|.+|..|+++++++++||+||.+.. ..++
T Consensus 267 ~~R~~h~~~~~~-~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~d 344 (470)
T PLN02193 267 TPRSFHSMAADE-ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDD 344 (470)
T ss_pred CCccceEEEEEC-CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCc
Confidence 999999998884 55999999987778899999999999999987656678899999999999999999997643 3689
Q ss_pred EEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC----------CCCceEEEEECCCCCCCCCcc
Q 010847 263 TIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG----------KYNNEVFVMRLKPRDIPRPKI 332 (499)
Q Consensus 263 ~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~----------~~~~~~~~~~~~~~~W~~~~~ 332 (499)
+++||+.+++|+.++.+. ..|.+|..++++ +++ +.||||||... ...+++|+||+.+++|..+..
T Consensus 345 v~~yD~~t~~W~~~~~~g-~~P~~R~~~~~~--~~~--~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 345 VHYYDPVQDKWTQVETFG-VRPSERSVFASA--AVG--KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred eEEEECCCCEEEEeccCC-CCCCCcceeEEE--EEC--CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 999999999999987643 235566655543 333 47999999752 245789999999999998765
Q ss_pred c------CCchhhhhhhhh-----HHHHHhcccc
Q 010847 333 F------QSPAAAAAAASV-----TAAYALAKSE 355 (499)
Q Consensus 333 ~------~~~~~~~~~~~~-----~~~~~~~~~~ 355 (499)
+ |.+|.+++++.. ..++.++|..
T Consensus 420 ~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~ 453 (470)
T PLN02193 420 FGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKA 453 (470)
T ss_pred CCCCCCCCCCCccccceeeEEcCCceEEEEcCCC
Confidence 3 344444433221 2366666664
No 5
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.6e-39 Score=280.65 Aligned_cols=271 Identities=27% Similarity=0.482 Sum_probs=225.8
Q ss_pred eEEEEcCCCCCccc-----CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC
Q 010847 31 KLYIVGGSRNGRFL-----SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS 105 (499)
Q Consensus 31 ~l~~~GG~~~~~~~-----~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~ 105 (499)
+||-|||+..+..+ =+|.+++..+.+|..+|+-... +..+..- +..|-.|.+|+++.+.+++|+|||.+...
T Consensus 25 riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~k--a~i~~~y-p~VPyqRYGHtvV~y~d~~yvWGGRND~e 101 (392)
T KOG4693|consen 25 RIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITK--ATIESPY-PAVPYQRYGHTVVEYQDKAYVWGGRNDDE 101 (392)
T ss_pred eEEecCCcccccccccCCcceeEEeeccceeEEecCccccc--ccccCCC-CccchhhcCceEEEEcceEEEEcCccCcc
Confidence 99999998543322 2799999999999999883221 1222211 45577899999999999999999999877
Q ss_pred CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC-CCccCcEEEEECCCCeeEEeeecCCCCCC
Q 010847 106 SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS-RKLLNDVHFLDLETMTWDAVEVTQTPPAP 184 (499)
Q Consensus 106 ~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~p~~ 184 (499)
..-+.++.||+.++.|.+...+|..|.+|.+|+++++++.+|||||+... ..++++++.+|++|.+|+.+.+.|.+|.-
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pprw 181 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRW 181 (392)
T ss_pred cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchh
Confidence 76788999999999999999999999999999999999999999998644 34788999999999999999999999999
Q ss_pred CccceEEEEcCcEEEEEcCCCCC---------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCC
Q 010847 185 RYDHSAALHANRYLIVFGGCSHS---------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGD 255 (499)
Q Consensus 185 r~~~~~~~~~~~~l~v~GG~~~~---------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 255 (499)
|..|++++++ +.+|||||.++. .+.+.|-.+|+.|..|......+-.|.+|..|++.++++.+|||||++
T Consensus 182 RDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYn 260 (392)
T KOG4693|consen 182 RDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYN 260 (392)
T ss_pred hhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccc
Confidence 9999999995 679999998532 467789999999999999876677899999999999999999999998
Q ss_pred CCCC--cceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC
Q 010847 256 NNNG--CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 310 (499)
Q Consensus 256 ~~~~--~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~ 310 (499)
+... ++|+|.||+.+..|+.|.. .+..|.+|.++ |+++..+ .+|+|||..
T Consensus 261 g~ln~HfndLy~FdP~t~~W~~I~~-~Gk~P~aRRRq--C~~v~g~--kv~LFGGTs 312 (392)
T KOG4693|consen 261 GTLNVHFNDLYCFDPKTSMWSVISV-RGKYPSARRRQ--CSVVSGG--KVYLFGGTS 312 (392)
T ss_pred hhhhhhhcceeecccccchheeeec-cCCCCCcccce--eEEEECC--EEEEecCCC
Confidence 7543 7999999999999998754 44445555444 4555555 589999964
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.3e-38 Score=324.74 Aligned_cols=243 Identities=28% Similarity=0.425 Sum_probs=224.6
Q ss_pred ccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCC-CCcccCcEEEEEcCCCceEEeeeCcccccCccccCCC
Q 010847 6 WHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGL 76 (499)
Q Consensus 6 ~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~ 76 (499)
-+|||..+.|..++ .+|.+|.. +||++||.+ +...++.+++|||.+++|..+++|.
T Consensus 304 e~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~------------ 368 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMN------------ 368 (571)
T ss_pred EEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCcc------------
Confidence 37999999999999 77887776 899999998 6788899999999999999999985
Q ss_pred CCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCC
Q 010847 77 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR 156 (499)
Q Consensus 77 ~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~ 156 (499)
.+|.++++++++|.||+.||.++... ++++++||+.+++|+.++ +|+.+|.+|++++++++||++||.+...
T Consensus 369 ----~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va---~m~~~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 369 ----TKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVA---PMLTRRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred ----CccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccC---CCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence 48999999999999999999996665 889999999999999997 8999999999999999999999998877
Q ss_pred CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcC
Q 010847 157 KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGR 236 (499)
Q Consensus 157 ~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r 236 (499)
.+.+++.+|||.+++|+.++ +|+.+|.+++++++ +++||++||.++......+++||+.+++|+.+ .+++.+|
T Consensus 441 ~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v---~~m~~~r 513 (571)
T KOG4441|consen 441 NCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMV---APMTSPR 513 (571)
T ss_pred cccceEEEEcCCCCceeecC---CcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEc---ccCcccc
Confidence 67999999999999999998 47789999999998 55599999998877778899999999999998 6799999
Q ss_pred cccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847 237 AGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 278 (499)
Q Consensus 237 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~ 278 (499)
..++++++++.+|++||.++...++.+..||+.+++|+.+..
T Consensus 514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 999999999999999999999999999999999999999876
No 7
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1e-37 Score=321.70 Aligned_cols=271 Identities=13% Similarity=0.198 Sum_probs=221.4
Q ss_pred cccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCC
Q 010847 27 PRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS 106 (499)
Q Consensus 27 ~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~ 106 (499)
+|...|++.||. .......+++||+.+++|..+++++ .+|.+|++++++++||++||......
T Consensus 255 ~r~~~l~~~~g~-~~~~~~~v~~yd~~~~~W~~l~~mp----------------~~r~~~~~a~l~~~IYviGG~~~~~~ 317 (557)
T PHA02713 255 PRQLCLVCHDTK-YNVCNPCILVYNINTMEYSVISTIP----------------NHIINYASAIVDNEIIIAGGYNFNNP 317 (557)
T ss_pred CcceEEEEecCc-cccCCCCEEEEeCCCCeEEECCCCC----------------ccccceEEEEECCEEEEEcCCCCCCC
Confidence 454567777663 1223357899999999999998874 47889999999999999999764333
Q ss_pred CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCc
Q 010847 107 DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRY 186 (499)
Q Consensus 107 ~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~ 186 (499)
..+++++||+.++.|..++ +||.+|.++++++++++||++||.+... ..+++++||+.+++|..++ ++|.+|.
T Consensus 318 ~~~~v~~Yd~~~n~W~~~~---~m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~---~mp~~r~ 390 (557)
T PHA02713 318 SLNKVYKINIENKIHVELP---PMIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLP---DMPIALS 390 (557)
T ss_pred ccceEEEEECCCCeEeeCC---CCcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECC---CCCcccc
Confidence 4678999999999999997 8999999999999999999999986543 4788999999999999887 5788999
Q ss_pred cceEEEEcCcEEEEEcCCCCC------------------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEE
Q 010847 187 DHSAALHANRYLIVFGGCSHS------------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 248 (499)
Q Consensus 187 ~~~~~~~~~~~l~v~GG~~~~------------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 248 (499)
+++++++ +++||++||.++. ..++.+++|||.+++|+.+ ++++.+|..+++++++++|
T Consensus 391 ~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v---~~m~~~r~~~~~~~~~~~I 466 (557)
T PHA02713 391 SYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL---PNFWTGTIRPGVVSHKDDI 466 (557)
T ss_pred cccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec---CCCCcccccCcEEEECCEE
Confidence 9999988 5569999997632 1367899999999999997 6799999999999999999
Q ss_pred EEEeCCCCCCCc-ceEEEEECCC-CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847 249 YIVGGGDNNNGC-QETIVLNMTK-LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 326 (499)
Q Consensus 249 ~v~GG~~~~~~~-~~~~~~d~~~-~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 326 (499)
||+||.++.... +.+++||+.+ ++|+.+++++. +|.++. ++++++ .||++||+++. ..+.+||+.+++
T Consensus 467 Yv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~----~r~~~~--~~~~~~--~iyv~Gg~~~~--~~~e~yd~~~~~ 536 (557)
T PHA02713 467 YVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES----RLSALH--TILHDN--TIMMLHCYESY--MLQDTFNVYTYE 536 (557)
T ss_pred EEEeCCCCCCccceeEEEecCCCCCCeeEccccCc----ccccce--eEEECC--EEEEEeeecce--eehhhcCccccc
Confidence 999998654333 4578999999 89999987753 343333 344444 79999999873 478899999999
Q ss_pred CCCCcccCC
Q 010847 327 IPRPKIFQS 335 (499)
Q Consensus 327 W~~~~~~~~ 335 (499)
|..+...++
T Consensus 537 W~~~~~~~~ 545 (557)
T PHA02713 537 WNHICHQHS 545 (557)
T ss_pred ccchhhhcC
Confidence 998776554
No 8
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.7e-37 Score=301.04 Aligned_cols=286 Identities=20% Similarity=0.286 Sum_probs=215.6
Q ss_pred cCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC-CCCceEEEEECCCCcEEEeecCCCC
Q 010847 52 LRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS-SDSMIVRFIDLETNLCGVMETSGKV 130 (499)
Q Consensus 52 ~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~-~~~~~~~~yd~~t~~W~~~~~~g~~ 130 (499)
+...+|..+++.. +..|.+|.+|++++++++|||+||..... ...+++++||+.+++|..+++.+..
T Consensus 4 ~~~~~W~~~~~~~------------~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 71 (341)
T PLN02153 4 TLQGGWIKVEQKG------------GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV 71 (341)
T ss_pred ccCCeEEEecCCC------------CCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC
Confidence 3567899988753 33578999999999999999999986432 2356899999999999998755444
Q ss_pred CC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecC--CCCCCCccceEEEEcCcEEEEEcCCCCC
Q 010847 131 PV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ--TPPAPRYDHSAALHANRYLIVFGGCSHS 207 (499)
Q Consensus 131 p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~--~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 207 (499)
|. .+.+|++++++++||+|||.+... ..+++++||+.+++|+.+.++. ..|.+|..|+++.++ ++||||||.+..
T Consensus 72 p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~-~~iyv~GG~~~~ 149 (341)
T PLN02153 72 PRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE-NHVYVFGGVSKG 149 (341)
T ss_pred CCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC-CEEEEECCccCC
Confidence 44 345788999999999999987654 4789999999999999987542 237899999998884 559999998633
Q ss_pred ------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC--------CCcceEEEEECCCCce
Q 010847 208 ------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------NGCQETIVLNMTKLAW 273 (499)
Q Consensus 208 ------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~d~~~~~W 273 (499)
..++++++||+.+++|+.+...+..|.+|.+|+++.+++++||+||.+.. ...+++++||+.+++|
T Consensus 150 ~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 150 GLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred CccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 24578999999999999986655567899999999999999999986421 1257899999999999
Q ss_pred EEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC----------CCCCceEEEEECCCCCCCCCcc---cCCchhhh
Q 010847 274 SILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN----------GKYNNEVFVMRLKPRDIPRPKI---FQSPAAAA 340 (499)
Q Consensus 274 ~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~----------~~~~~~~~~~~~~~~~W~~~~~---~~~~~~~~ 340 (499)
+.++... ..|.+|.+++++ ++. +.||||||.. +...+++|+||+.+++|..+.. .+.|+..+
T Consensus 230 ~~~~~~g-~~P~~r~~~~~~--~~~--~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~ 304 (341)
T PLN02153 230 TEVETTG-AKPSARSVFAHA--VVG--KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWT 304 (341)
T ss_pred EeccccC-CCCCCcceeeeE--EEC--CEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccc
Confidence 9986532 235556555443 333 4799999973 2245799999999999987753 23344332
Q ss_pred --hhhh-h--HHHHHhccccc
Q 010847 341 --AAAS-V--TAAYALAKSEK 356 (499)
Q Consensus 341 --~~~~-~--~~~~~~~~~~~ 356 (499)
..+. . ..+|.++|-..
T Consensus 305 ~~~~~~v~~~~~~~~~gG~~~ 325 (341)
T PLN02153 305 AYTTATVYGKNGLLMHGGKLP 325 (341)
T ss_pred cccccccCCcceEEEEcCcCC
Confidence 2222 2 24777777643
No 9
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=3.9e-37 Score=311.18 Aligned_cols=295 Identities=33% Similarity=0.562 Sum_probs=253.2
Q ss_pred CeEEc-ccCCCCCCcccc--------eEEEEcCCCCCcccCc--EEEEEcCCCceEEeeeCcccccCccccCCCCCCCCC
Q 010847 14 LWVTL-PVSGARPSPRYK--------KLYIVGGSRNGRFLSD--VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPP 82 (499)
Q Consensus 14 ~W~~~-~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~--~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~ 82 (499)
.|... ...+..|.+|++ ++|||||........+ +++||..+..|....... ..|++
T Consensus 46 ~~~~~~~~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g-------------~~p~~ 112 (482)
T KOG0379|consen 46 PENLGCDVLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATG-------------DEPSP 112 (482)
T ss_pred eeccccccCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccC-------------CCCCc
Confidence 34443 355678888988 9999999876665555 999999999999988874 44789
Q ss_pred ccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcE
Q 010847 83 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 162 (499)
Q Consensus 83 r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 162 (499)
|.+|++++++++||+|||.+......++++.||+.|++|..+.+.+.+|.+|.+|++++++++||||||.+......|++
T Consensus 113 r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl 192 (482)
T KOG0379|consen 113 RYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDL 192 (482)
T ss_pred ccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeee
Confidence 99999999999999999998644457899999999999999999999999999999999999999999999887689999
Q ss_pred EEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEE
Q 010847 163 HFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAG 241 (499)
Q Consensus 163 ~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~ 241 (499)
|+||+.+.+|.++...|..|.||.+|+++++++. ++||||.. +..+++++|.+|+.+..|..+...+..|.+|++|++
T Consensus 193 ~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~-~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~ 271 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNK-LLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSL 271 (482)
T ss_pred eeeccccccceecccCCCCCCCCCCceEEEECCe-EEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeee
Confidence 9999999999999999999999999999999776 66666665 778999999999999999988888999999999999
Q ss_pred EEECCEEEEEeCCCCC--CCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC--CCCCceE
Q 010847 242 ITIDENWYIVGGGDNN--NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--GKYNNEV 317 (499)
Q Consensus 242 ~~~~~~l~v~GG~~~~--~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--~~~~~~~ 317 (499)
+..+++++|+||.... ..+.++|.||+.+..|..+.......|.++..+..+.....+...+.++||.. .....++
T Consensus 272 ~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (482)
T KOG0379|consen 272 TVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADV 351 (482)
T ss_pred EEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhc
Confidence 9999999999998775 25789999999999999998777566888888988887777777777778743 3334445
Q ss_pred EEEEC
Q 010847 318 FVMRL 322 (499)
Q Consensus 318 ~~~~~ 322 (499)
+.+..
T Consensus 352 ~~~~~ 356 (482)
T KOG0379|consen 352 FSLQI 356 (482)
T ss_pred ccccc
Confidence 44433
No 10
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=8.8e-38 Score=322.17 Aligned_cols=242 Identities=12% Similarity=0.148 Sum_probs=208.4
Q ss_pred CCccccCCCCCeEEcccCCCCCCcccc--------eEEEEcCCC-CCcccCcEEEEEcCCCceEEeeeCcccccCccccC
Q 010847 4 GSWHLELPYDLWVTLPVSGARPSPRYK--------KLYIVGGSR-NGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDS 74 (499)
Q Consensus 4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~--------~l~~~GG~~-~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~ 74 (499)
..|+|||.+++|..++ ++|.+|.. +||++||.. +...++.+++|||.+++|..+++++
T Consensus 273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~---------- 339 (557)
T PHA02713 273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI---------- 339 (557)
T ss_pred CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc----------
Confidence 3589999999999999 67777744 999999975 4456789999999999999998874
Q ss_pred CCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCC
Q 010847 75 GLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDR 154 (499)
Q Consensus 75 ~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~ 154 (499)
.+|.++++++++++||++||.++... .+++++||+.+++|+.++ +||.+|.++++++++++||++||.+.
T Consensus 340 ------~~R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviGG~~~ 409 (557)
T PHA02713 340 ------KNRCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIGGRTE 409 (557)
T ss_pred ------chhhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEeCCCc
Confidence 58999999999999999999865443 678999999999999998 89999999999999999999999864
Q ss_pred CC-----------------CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC-CCCcEEEE
Q 010847 155 SR-----------------KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVL 216 (499)
Q Consensus 155 ~~-----------------~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~ 216 (499)
.. ...+.+++|||.+++|+.++ ++|.+|..++++++++ .||++||.++.. ..+.+++|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~-~IYv~GG~~~~~~~~~~ve~Y 485 (557)
T PHA02713 410 HIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKD-DIYVVCDIKDEKNVKTCIFRY 485 (557)
T ss_pred ccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECC-EEEEEeCCCCCCccceeEEEe
Confidence 31 12578999999999999887 4778999999998855 599999986433 33568999
Q ss_pred ECCC-CceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847 217 DLQT-NEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 278 (499)
Q Consensus 217 d~~~-~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~ 278 (499)
|+.+ ++|+.+ +++|.+|..+++++++++||++||.++. ..+.+||+.+++|+.+.+
T Consensus 486 dp~~~~~W~~~---~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 486 NTNTYNGWELI---TTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cCCCCCCeeEc---cccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 9999 899997 6899999999999999999999998763 368899999999998864
No 11
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=268.06 Aligned_cols=269 Identities=27% Similarity=0.445 Sum_probs=222.5
Q ss_pred CCccceeEEEECCEEEEEcccCCCCC----CCceEEEEECCCCcEEEeec--C--------CCCCCCCcceEEEEECCEE
Q 010847 81 PPMSDHCMVKWGTKLLILGGHYKKSS----DSMIVRFIDLETNLCGVMET--S--------GKVPVARGGHSVTLVGSRL 146 (499)
Q Consensus 81 ~~r~~~s~~~~~~~iyv~GG~~~~~~----~~~~~~~yd~~t~~W~~~~~--~--------g~~p~~r~~~~~~~~~~~l 146 (499)
|.|.+|+++.+|..||-|||++.... ..-++.++|..+-.|.++++ + .-.|..|++|+.+.+.+++
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~ 91 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKA 91 (392)
T ss_pred cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceE
Confidence 47999999999999999999987765 23479999999999999875 1 1256789999999999999
Q ss_pred EEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC--CCCCCcEEEEECCCCceE
Q 010847 147 IIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH--SIFFNDLHVLDLQTNEWS 224 (499)
Q Consensus 147 yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~--~~~~~~i~~~d~~~~~W~ 224 (499)
|+.||.++....+|.+++||++++.|.++...|..|.+|.+|+++++++. +|||||+.. ..++++++.+|++|.+|+
T Consensus 92 yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~-MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 92 YVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQ-MYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcE-EEEecChHHHHHhhhccceeEeccceeee
Confidence 99999998777899999999999999999999999999999999999665 999999853 467899999999999999
Q ss_pred ecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCC---------cceEEEEECCCCceEEeccCCCCCCCCCCCCceEEE
Q 010847 225 QPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---------CQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSA 295 (499)
Q Consensus 225 ~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---------~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~ 295 (499)
.+...+.+|.-|.+|+++++++.+|||||..+... .+.+..+|+.|..|...+. ....|..|..|+. .
T Consensus 171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~-~~~~P~GRRSHS~--f 247 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE-NTMKPGGRRSHST--F 247 (392)
T ss_pred ehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC-CCcCCCcccccce--E
Confidence 99988999999999999999999999999754432 4567899999999998643 3344666666654 4
Q ss_pred EEcCceEEEEEcCCCCC---CCceEEEEECCCCCCCCCcc---cCCchhh-hhhhhhHHHHHhcccc
Q 010847 296 IIEGEHHLVAFGGYNGK---YNNEVFVMRLKPRDIPRPKI---FQSPAAA-AAAASVTAAYALAKSE 355 (499)
Q Consensus 296 ~~~~~~~l~v~GG~~~~---~~~~~~~~~~~~~~W~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 355 (499)
+.++ .||+|||+++. -.+|+|.||+.+..|..... .|.++.+ ++.++-..+|-++|..
T Consensus 248 vYng--~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 248 VYNG--KMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred EEcc--eEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCC
Confidence 4555 69999999864 47899999999999987654 3555554 4444455567777654
No 12
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=6.8e-35 Score=303.45 Aligned_cols=246 Identities=18% Similarity=0.286 Sum_probs=208.4
Q ss_pred ccccCCCCCeEEcccCCCCCCccc-c------eEEEEcCCCCC-cccCcEEEEEcCCCceEEeeeCcccccCccccCCCC
Q 010847 6 WHLELPYDLWVTLPVSGARPSPRY-K------KLYIVGGSRNG-RFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLL 77 (499)
Q Consensus 6 ~~~~~~~~~W~~~~~~~~~p~~r~-~------~l~~~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~ 77 (499)
.+|++..++|..++ ..|.+.. + +||++||.... ...+++++||+.+++|..++++
T Consensus 267 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~-------------- 329 (534)
T PHA03098 267 ITNYSPLSEINTII---DIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL-------------- 329 (534)
T ss_pred eecchhhhhccccc---CccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC--------------
Confidence 36888899999887 3343333 2 99999998653 4567999999999999998776
Q ss_pred CCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCC
Q 010847 78 EVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRK 157 (499)
Q Consensus 78 ~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~ 157 (499)
|.+|.+|++++++++||++||..... ..+++++||+.+++|+.++ ++|.+|.+++++.++++||++||......
T Consensus 330 --~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~GG~~~~~~ 403 (534)
T PHA03098 330 --IYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVIGGISKNDE 403 (534)
T ss_pred --CcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEECCcCCCCc
Confidence 45899999999999999999987443 3678999999999999987 89999999999999999999999865555
Q ss_pred ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC---CCCcEEEEECCCCceEecccCCCCCC
Q 010847 158 LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI---FFNDLHVLDLQTNEWSQPEIKGDLVT 234 (499)
Q Consensus 158 ~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~ 234 (499)
.++++++||+.+++|+.+. ++|.+|.+|+++.+ +++||++||.+... ..+.+++||+.+++|+.+ +++|.
T Consensus 404 ~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~~~ 476 (534)
T PHA03098 404 LLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL---SSLNF 476 (534)
T ss_pred ccceEEEEeCCCCeeeecC---CCCccccCceEEEE-CCEEEEECCccCCCCCcccceEEEecCCCCceeeC---CCCCc
Confidence 6789999999999999886 47889999998888 45699999976432 356799999999999997 56788
Q ss_pred cCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCC
Q 010847 235 GRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG 281 (499)
Q Consensus 235 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~ 281 (499)
+|..|+++.+++++||+||.+.....+++++||+.+++|+.++.+|.
T Consensus 477 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 477 PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 89999999999999999998766667899999999999999877553
No 13
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=100.00 E-value=9e-35 Score=293.98 Aligned_cols=252 Identities=31% Similarity=0.524 Sum_probs=221.5
Q ss_pred CCCCCCccceeEEEECCEEEEEcccCCCCCCCc-eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC
Q 010847 77 LEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSM-IVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS 155 (499)
Q Consensus 77 ~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~ 155 (499)
...|.+|.+|+++.+++++|||||......... ++|+||..+..|.....+|..|.+|.+|++++++++||+|||.+..
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 455889999999999999999999877665233 6999999999999999999999999999999999999999999865
Q ss_pred CCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCC-CCCcEEEEECCCCceEecccCCCCCC
Q 010847 156 RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNEWSQPEIKGDLVT 234 (499)
Q Consensus 156 ~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~W~~~~~~~~~p~ 234 (499)
....+++++||+.|++|..+.+.+.+|++|.+|+++.++ +++|||||.+... ..|++|+||+.+.+|.++.+.+..|.
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 556899999999999999999999999999999999996 6699999998766 89999999999999999999999999
Q ss_pred cCcccEEEEECCEEEEEeCCC-CCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-
Q 010847 235 GRAGHAGITIDENWYIVGGGD-NNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK- 312 (499)
Q Consensus 235 ~r~~~~~~~~~~~l~v~GG~~-~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~- 312 (499)
||++|++++++++++||||++ ....++|+|.||+.+..|..+ ......|.+|.+|+.++ . ...++++||....
T Consensus 214 pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~-~~~g~~p~~R~~h~~~~---~-~~~~~l~gG~~~~~ 288 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL-PTGGDLPSPRSGHSLTV---S-GDHLLLFGGGTDPK 288 (482)
T ss_pred CCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeec-cccCCCCCCcceeeeEE---E-CCEEEEEcCCcccc
Confidence 999999999999999999988 556689999999999999955 44556678888887652 2 3468888887652
Q ss_pred --CCceEEEEECCCCCCCCCcccC
Q 010847 313 --YNNEVFVMRLKPRDIPRPKIFQ 334 (499)
Q Consensus 313 --~~~~~~~~~~~~~~W~~~~~~~ 334 (499)
...++|.|+.....|.......
T Consensus 289 ~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 289 QEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred cccccccccccccccceeeeeccc
Confidence 6889999999999998876544
No 14
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=3.7e-34 Score=297.92 Aligned_cols=267 Identities=20% Similarity=0.225 Sum_probs=215.8
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
.+++.||.. .....+..|++.+.+|..++..+ .+..|++++++++||++||........++
T Consensus 252 ~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 312 (534)
T PHA03098 252 IIYIHITMS--IFTYNYITNYSPLSEINTIIDIH-----------------YVYCFGSVVLNNVIYFIGGMNKNNLSVNS 312 (534)
T ss_pred ceEeecccc--hhhceeeecchhhhhcccccCcc-----------------ccccceEEEECCEEEEECCCcCCCCeecc
Confidence 566666654 23445678899999998876432 34557899999999999998765555678
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 190 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 190 (499)
++.||+.+++|..++ ++|.+|.++++++++++||++||.+... ..+++++||+.+++|+.++ ++|.+|.+|++
T Consensus 313 v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~ 385 (534)
T PHA03098 313 VVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEP---PLIFPRYNPCV 385 (534)
T ss_pred EEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCC---CcCcCCccceE
Confidence 999999999999887 8899999999999999999999987433 5789999999999999876 57889999999
Q ss_pred EEEcCcEEEEEcCCC-CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCC---cceEEEE
Q 010847 191 ALHANRYLIVFGGCS-HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNG---CQETIVL 266 (499)
Q Consensus 191 ~~~~~~~l~v~GG~~-~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~---~~~~~~~ 266 (499)
+.++ +.||++||.. ....++++++||+.+++|+.+ .++|.+|.+|+++.+++++||+||.+.... .+++++|
T Consensus 386 ~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 461 (534)
T PHA03098 386 VNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKG---SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESY 461 (534)
T ss_pred EEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeec---CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEe
Confidence 8884 5699999964 334578999999999999997 568899999999999999999999764432 5679999
Q ss_pred ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCC-CceEEEEECCCCCCCCCcccCC
Q 010847 267 NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPRDIPRPKIFQS 335 (499)
Q Consensus 267 d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~~W~~~~~~~~ 335 (499)
|+.+++|+.++.++ .++.++++ ++.+ +.|||+||.++.. .+++++||+..+.|...+.+|.
T Consensus 462 d~~~~~W~~~~~~~----~~r~~~~~--~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 462 NPVTNKWTELSSLN----FPRINASL--CIFN--NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred cCCCCceeeCCCCC----cccccceE--EEEC--CEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 99999999987654 23545543 3333 4799999987543 6789999999999988776544
No 15
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=266.68 Aligned_cols=240 Identities=24% Similarity=0.411 Sum_probs=205.1
Q ss_pred CCCCCcccc----------eEEEEcCC--CC--CcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee
Q 010847 22 GARPSPRYK----------KLYIVGGS--RN--GRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC 87 (499)
Q Consensus 22 ~~~p~~r~~----------~l~~~GG~--~~--~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s 87 (499)
-++|+||+. -|++|||- ++ ...+|+++.||..+.+|+.+... .+|+||++|.
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp--------------n~P~pRsshq 126 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP--------------NAPPPRSSHQ 126 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC--------------CCcCCCccce
Confidence 357888887 89999995 33 23578999999999999999864 4589999999
Q ss_pred EEEEC-CEEEEEcccCCCCC-----CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC---CCc
Q 010847 88 MVKWG-TKLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS---RKL 158 (499)
Q Consensus 88 ~~~~~-~~iyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~ 158 (499)
+|++. |.+|+|||--.... .+.++|.||+.+++|+++...| .|.+|++|-|++..++|++|||+-.. ..|
T Consensus 127 ~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~Y 205 (521)
T KOG1230|consen 127 AVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIY 205 (521)
T ss_pred eEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEE
Confidence 99996 89999999654332 4678999999999999998764 89999999999999999999998543 238
Q ss_pred cCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCC---------CCCCCCcEEEEECCC-----CceE
Q 010847 159 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQT-----NEWS 224 (499)
Q Consensus 159 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~-----~~W~ 224 (499)
.|++|+||+.+.+|+++.+.|.-|.||++|++.+..++.|||.||++ .+...+++|.+++.+ -.|.
T Consensus 206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~ 285 (521)
T KOG1230|consen 206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWT 285 (521)
T ss_pred eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEe
Confidence 99999999999999999998888999999999998666699999985 235688999999988 4699
Q ss_pred ecccCCCCCCcCcccEEEEECC-EEEEEeCCCCC---------CCcceEEEEECCCCceEEe
Q 010847 225 QPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNN---------NGCQETIVLNMTKLAWSIL 276 (499)
Q Consensus 225 ~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~---------~~~~~~~~~d~~~~~W~~l 276 (499)
.+...+..|.||+++++++..+ +.+.|||..+- ..+||+|.||+..+.|...
T Consensus 286 kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 286 KVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 9988888999999999988855 89999997542 2369999999999999865
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5e-33 Score=270.65 Aligned_cols=251 Identities=18% Similarity=0.235 Sum_probs=188.4
Q ss_pred eEEEEcCCCCC----------cccCcEEEEE-cC-CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEE
Q 010847 31 KLYIVGGSRNG----------RFLSDVQVFD-LR-SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLIL 98 (499)
Q Consensus 31 ~l~~~GG~~~~----------~~~~~~~~yd-~~-t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~ 98 (499)
.|||+||.+.. .+++++++|+ +. +.+|..++++ |.+|..+++++++++||++
T Consensus 15 ~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l----------------p~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 15 YILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL----------------PYEAAYGASVSVENGIYYI 78 (323)
T ss_pred EEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC----------------CccccceEEEEECCEEEEE
Confidence 89999998643 2456889886 33 2379988776 4578888899999999999
Q ss_pred cccCCCCCCCceEEEEECCCCcEE-EeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeee
Q 010847 99 GGHYKKSSDSMIVRFIDLETNLCG-VMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV 177 (499)
Q Consensus 99 GG~~~~~~~~~~~~~yd~~t~~W~-~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 177 (499)
||.+.... .+++++||+.++.|. .....+++|.+|.+|++++++++||++||..... ..+++++||+.+++|+.+++
T Consensus 79 GG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~ 156 (323)
T TIGR03548 79 GGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPD 156 (323)
T ss_pred cCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCC
Confidence 99876543 678999999999983 1122238999999999999999999999975433 47899999999999999874
Q ss_pred cCCCC-CCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCC--CCCCcCcccEEEE-ECCEEEEEeC
Q 010847 178 TQTPP-APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG--DLVTGRAGHAGIT-IDENWYIVGG 253 (499)
Q Consensus 178 ~~~~p-~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~--~~p~~r~~~~~~~-~~~~l~v~GG 253 (499)
+| .+|..|+++.++ ++||||||.+... .+++++||+.+++|+.+.... ..|.++..++++. .+++|||+||
T Consensus 157 ---~p~~~r~~~~~~~~~-~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 157 ---FPGEPRVQPVCVKLQ-NELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred ---CCCCCCCcceEEEEC-CEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 44 378888887774 5699999986433 467899999999999985432 2344444555444 4789999999
Q ss_pred CCCCC--------------------------------CcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCce
Q 010847 254 GDNNN--------------------------------GCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEH 301 (499)
Q Consensus 254 ~~~~~--------------------------------~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~ 301 (499)
.+... ..+++++||+.+++|+.++.+|. .+|.++++ ++++ +
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~---~~r~~~~~--~~~~--~ 304 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF---FARCGAAL--LLTG--N 304 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc---cccCchhe--EEEC--C
Confidence 76321 12579999999999999875542 24555544 3444 4
Q ss_pred EEEEEcCCCC
Q 010847 302 HLVAFGGYNG 311 (499)
Q Consensus 302 ~l~v~GG~~~ 311 (499)
.||++||...
T Consensus 305 ~iyv~GG~~~ 314 (323)
T TIGR03548 305 NIFSINGELK 314 (323)
T ss_pred EEEEEecccc
Confidence 6999999753
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=5.1e-33 Score=270.57 Aligned_cols=267 Identities=17% Similarity=0.218 Sum_probs=203.9
Q ss_pred CCccceeEEEECCEEEEEcccCCCCC---------CCceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 010847 81 PPMSDHCMVKWGTKLLILGGHYKKSS---------DSMIVRFIDLET--NLCGVMETSGKVPVARGGHSVTLVGSRLIIF 149 (499)
Q Consensus 81 ~~r~~~s~~~~~~~iyv~GG~~~~~~---------~~~~~~~yd~~t--~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~ 149 (499)
+.+.++.++++++.|||+||.+.... ..+++++|+... ..|..++ ++|.+|..+++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEE
Confidence 46889999999999999999876531 345788886333 3798886 899999988899999999999
Q ss_pred cCcCCCCCccCcEEEEECCCCeeE-EeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847 150 GGEDRSRKLLNDVHFLDLETMTWD-AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228 (499)
Q Consensus 150 GG~~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 228 (499)
||.+... ..+++++||+.+++|. .....+++|.+|..|++++++ ++||++||......++++++||+.+++|+.+
T Consensus 79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~-~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~-- 154 (323)
T TIGR03548 79 GGSNSSE-RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD-GTLYVGGGNRNGKPSNKSYLFNLETQEWFEL-- 154 (323)
T ss_pred cCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC-CEEEEEeCcCCCccCceEEEEcCCCCCeeEC--
Confidence 9987644 4789999999999983 223345788999999998884 5699999986666689999999999999997
Q ss_pred CCCCC-CcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCC-CCCCCCCCCceEEEEEcCceEEEEE
Q 010847 229 KGDLV-TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKG-RNPLASEGLSVCSAIIEGEHHLVAF 306 (499)
Q Consensus 229 ~~~~p-~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~-~~p~~~~~~~~~~~~~~~~~~l~v~ 306 (499)
.++| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.++.++. ..|..+.+ .+.+++.+ +.|||+
T Consensus 155 -~~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~--~~~~~~~~-~~iyv~ 229 (323)
T TIGR03548 155 -PDFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLG--AASIKINE-SLLLCI 229 (323)
T ss_pred -CCCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccc--eeEEEECC-CEEEEE
Confidence 3455 479999999999999999997643 34678999999999999987642 12333322 33333333 479999
Q ss_pred cCCCCC---------------------------------CCceEEEEECCCCCCCCCcccC-Cchhhhhhhhh-HHHHHh
Q 010847 307 GGYNGK---------------------------------YNNEVFVMRLKPRDIPRPKIFQ-SPAAAAAAASV-TAAYAL 351 (499)
Q Consensus 307 GG~~~~---------------------------------~~~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~-~~~~~~ 351 (499)
||.++. ..+++++||+..++|...+.+| .++..++++.+ ..+|.+
T Consensus 230 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~ 309 (323)
T TIGR03548 230 GGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSI 309 (323)
T ss_pred CCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEE
Confidence 998642 1367999999999999988765 34544434333 458888
Q ss_pred cccccccC
Q 010847 352 AKSEKLDI 359 (499)
Q Consensus 352 ~~~~~~~~ 359 (499)
+|+.+...
T Consensus 310 GG~~~pg~ 317 (323)
T TIGR03548 310 NGELKPGV 317 (323)
T ss_pred eccccCCc
Confidence 88766544
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1e-32 Score=271.43 Aligned_cols=255 Identities=19% Similarity=0.204 Sum_probs=190.1
Q ss_pred eEEEEcCCCCCcccCcEEEEEc--CCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC---
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDL--RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS--- 105 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~--~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~--- 105 (499)
+|||+||... +.+++||+ .+++|..+++++. .+|.+|++++++++||++||.....
T Consensus 19 ~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~---------------~~R~~~~~~~~~~~iYv~GG~~~~~~~~ 79 (346)
T TIGR03547 19 KVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPG---------------GPRNQAVAAAIDGKLYVFGGIGKANSEG 79 (346)
T ss_pred EEEEEccccC----CeeEEEECCCCCCCceECCCCCC---------------CCcccceEEEECCEEEEEeCCCCCCCCC
Confidence 9999999732 57899996 6789999988741 3799999999999999999986432
Q ss_pred --CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEcCcCCCC--------------------------
Q 010847 106 --SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSR-------------------------- 156 (499)
Q Consensus 106 --~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~-------------------------- 156 (499)
...+++++||+.+++|+.++. .+|.+|.+++++ +++++||++||.+...
T Consensus 80 ~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T TIGR03547 80 SPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYF 157 (346)
T ss_pred cceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHh
Confidence 135789999999999999962 467788888776 6899999999986320
Q ss_pred -------CccCcEEEEECCCCeeEEeeecCCCCC-CCccceEEEEcCcEEEEEcCCCCCC-CCCcEEEEEC--CCCceEe
Q 010847 157 -------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGGCSHSI-FFNDLHVLDL--QTNEWSQ 225 (499)
Q Consensus 157 -------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~--~~~~W~~ 225 (499)
...+++++||+.+++|+.+. .+|. +|.+++++.+ +++||||||..... ...+++.|++ .+++|+.
T Consensus 158 ~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~ 233 (346)
T TIGR03547 158 SQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHK-GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNK 233 (346)
T ss_pred CCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEE-CCEEEEEeeeeCCCccchheEEEEecCCCceeee
Confidence 02478999999999999986 4564 6788888887 55699999975432 3456666654 6779998
Q ss_pred cccCCCCCCcC-------cccEEEEECCEEEEEeCCCCCC-----------------CcceEEEEECCCCceEEeccCCC
Q 010847 226 PEIKGDLVTGR-------AGHAGITIDENWYIVGGGDNNN-----------------GCQETIVLNMTKLAWSILTSVKG 281 (499)
Q Consensus 226 ~~~~~~~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~~~~~d~~~~~W~~l~~~~~ 281 (499)
+ .++|.+| .+|++++++++|||+||.+... ....+.+||+.+++|+.++.+|.
T Consensus 234 ~---~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~ 310 (346)
T TIGR03547 234 L---PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQ 310 (346)
T ss_pred c---CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCC
Confidence 7 4455543 4666788999999999975211 12357899999999999987643
Q ss_pred CCCCCCCCCceEEEEEcCceEEEEEcCCCC--CCCceEEEEE
Q 010847 282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMR 321 (499)
Q Consensus 282 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~ 321 (499)
++..+ ++++++ +.|||+||.+. ...++++.|.
T Consensus 311 ----~~~~~--~~~~~~--~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 311 ----GLAYG--VSVSWN--NGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ----Cceee--EEEEcC--CEEEEEeccCCCCCEeeeEEEEE
Confidence 33332 233344 47999999863 4567787664
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.9e-32 Score=269.11 Aligned_cols=276 Identities=18% Similarity=0.219 Sum_probs=202.0
Q ss_pred CeEEcccCCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcC--CCceEEeeeCcccccCccccCCCCCCCCCc
Q 010847 14 LWVTLPVSGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLR--SLAWSNLRLETELDADKTEDSGLLEVLPPM 83 (499)
Q Consensus 14 ~W~~~~~~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r 83 (499)
.+..+| ++|.+|.. +|||+||... +.+++||+. ++.|..+++++ ..+|
T Consensus 18 ~~~~l~---~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p---------------~~~r 75 (376)
T PRK14131 18 NAEQLP---DLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFP---------------GGPR 75 (376)
T ss_pred ecccCC---CCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCC---------------CCCc
Confidence 455666 67766663 9999999743 358999986 47899988763 1379
Q ss_pred cceeEEEECCEEEEEcccCCCC-----CCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCC-
Q 010847 84 SDHCMVKWGTKLLILGGHYKKS-----SDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSR- 156 (499)
Q Consensus 84 ~~~s~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~- 156 (499)
.+|++++++++||++||..... ...+++++||+.+++|+.++. .+|.++.+|++++ .+++||++||.+...
T Consensus 76 ~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~ 153 (376)
T PRK14131 76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIF 153 (376)
T ss_pred ccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHH
Confidence 9999999999999999986411 135789999999999999973 3577788888777 899999999975310
Q ss_pred --------------------------------CccCcEEEEECCCCeeEEeeecCCCCC-CCccceEEEEcCcEEEEEcC
Q 010847 157 --------------------------------KLLNDVHFLDLETMTWDAVEVTQTPPA-PRYDHSAALHANRYLIVFGG 203 (499)
Q Consensus 157 --------------------------------~~~~~v~~yd~~t~~W~~~~~~~~~p~-~r~~~~~~~~~~~~l~v~GG 203 (499)
...+++++||+.+++|+.+. .+|. +|.+|+++.+ +++||++||
T Consensus 154 ~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~-~~~iYv~GG 229 (376)
T PRK14131 154 DGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIK-GNKLWLING 229 (376)
T ss_pred HHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEE-CCEEEEEee
Confidence 12478999999999999876 4564 6778888777 556999999
Q ss_pred CCCC-CCCCcEEE--EECCCCceEecccCCCCCCcCc--------ccEEEEECCEEEEEeCCCCCC--------------
Q 010847 204 CSHS-IFFNDLHV--LDLQTNEWSQPEIKGDLVTGRA--------GHAGITIDENWYIVGGGDNNN-------------- 258 (499)
Q Consensus 204 ~~~~-~~~~~i~~--~d~~~~~W~~~~~~~~~p~~r~--------~~~~~~~~~~l~v~GG~~~~~-------------- 258 (499)
.... ...+++|. ||+++++|+.+ .++|.+|. ++.+++++++|||+||.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 306 (376)
T PRK14131 230 EIKPGLRTDAVKQGKFTGNNLKWQKL---PDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHE 306 (376)
T ss_pred eECCCcCChhheEEEecCCCcceeec---CCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCccccc
Confidence 6432 34456654 46688999997 45555553 233567899999999975321
Q ss_pred Cc---ceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC--CCCceEEEEECCCCCCC
Q 010847 259 GC---QETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKPRDIP 328 (499)
Q Consensus 259 ~~---~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~~~W~ 328 (499)
.. ..+.+||+.++.|+.++.+|. ++.+++ ++++++ .|||+||... ...+++++|++..+.+.
T Consensus 307 ~~~~~~~~e~yd~~~~~W~~~~~lp~----~r~~~~--av~~~~--~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 307 GLKKSWSDEIYALVNGKWQKVGELPQ----GLAYGV--SVSWNN--GVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCcceeehheEEecCCcccccCcCCC----CccceE--EEEeCC--EEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 11 235689999999999876643 344443 344444 6999999753 46789999998776543
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.9e-33 Score=261.61 Aligned_cols=296 Identities=25% Similarity=0.435 Sum_probs=238.5
Q ss_pred cCCCCCeEEccc-CCCCCCcccc--------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCC
Q 010847 9 ELPYDLWVTLPV-SGARPSPRYK--------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEV 79 (499)
Q Consensus 9 ~~~~~~W~~~~~-~~~~p~~r~~--------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~ 79 (499)
.+.--+|+++.. +|+.|.||.+ -|+||||-+ ....+.+++|+..++.|..-..- ++.
T Consensus 13 ~~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGN-EGiiDELHvYNTatnqWf~Pavr-------------GDi 78 (830)
T KOG4152|consen 13 EKNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGN-EGIIDELHVYNTATNQWFAPAVR-------------GDI 78 (830)
T ss_pred hhcccceEEEecccCCCCCccccchheeeeeeEEEecCCc-ccchhhhhhhccccceeecchhc-------------CCC
Confidence 344558997765 4688999998 788999843 44678899999999999987766 566
Q ss_pred CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeec----CCCCCCCCcceEEEEECCEEEEEcCcCCC
Q 010847 80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET----SGKVPVARGGHSVTLVGSRLIIFGGEDRS 155 (499)
Q Consensus 80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~----~g~~p~~r~~~~~~~~~~~lyv~GG~~~~ 155 (499)
|+++..|.++..|.+||+|||....+.+.+++|.+-...=.|+++.+ .|.+|.||-+|+...++++.|+|||...+
T Consensus 79 PpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNd 158 (830)
T KOG4152|consen 79 PPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLAND 158 (830)
T ss_pred CCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccc
Confidence 99999999999999999999998888888888877666666776653 57899999999999999999999997532
Q ss_pred --------CCccCcEEEEECCCC----eeEEeeecCCCCCCCccceEEEEc-----CcEEEEEcCCCCCCCCCcEEEEEC
Q 010847 156 --------RKLLNDVHFLDLETM----TWDAVEVTQTPPAPRYDHSAALHA-----NRYLIVFGGCSHSIFFNDLHVLDL 218 (499)
Q Consensus 156 --------~~~~~~v~~yd~~t~----~W~~~~~~~~~p~~r~~~~~~~~~-----~~~l~v~GG~~~~~~~~~i~~~d~ 218 (499)
-.|+|++|++++.-+ .|..+...|..|.+|..|+++++. ..++|||||.+ +.++.|+|.+|+
T Consensus 159 seDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~-G~RLgDLW~Ldl 237 (830)
T KOG4152|consen 159 SEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS-GCRLGDLWTLDL 237 (830)
T ss_pred ccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc-cccccceeEEec
Confidence 127899999998743 599999999999999999999983 23699999986 456899999999
Q ss_pred CCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC--------------CCcceEEEEECCCCceEEecc--CCC-
Q 010847 219 QTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN--------------NGCQETIVLNMTKLAWSILTS--VKG- 281 (499)
Q Consensus 219 ~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--------------~~~~~~~~~d~~~~~W~~l~~--~~~- 281 (499)
+|.+|.+++..+..|.||+-|+++.|+|++|||||.... ...+.+-.+|+.+..|..+-. ...
T Consensus 238 ~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~ 317 (830)
T KOG4152|consen 238 DTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDN 317 (830)
T ss_pred ceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccc
Confidence 999999999999999999999999999999999996311 114567789999999997632 222
Q ss_pred CCCCCCCCCceEEEEEcCceEEEEEcCCCCC--------CCceEEEEECC
Q 010847 282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNGK--------YNNEVFVMRLK 323 (499)
Q Consensus 282 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~--------~~~~~~~~~~~ 323 (499)
..|.+|.||..+++ . ..||+-.|.++. ...|+|.+|..
T Consensus 318 tiPR~RAGHCAvAi--g--tRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 318 TIPRARAGHCAVAI--G--TRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred ccccccccceeEEe--c--cEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 25777777754443 3 468888888652 35678888864
No 21
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4.1e-32 Score=276.44 Aligned_cols=228 Identities=17% Similarity=0.222 Sum_probs=190.3
Q ss_pred ccCCCCCeEEcccCCCCCCcccceEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee
Q 010847 8 LELPYDLWVTLPVSGARPSPRYKKLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC 87 (499)
Q Consensus 8 ~~~~~~~W~~~~~~~~~p~~r~~~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s 87 (499)
+++..+.|..+.... ....-...||++||.++....+.++.|||.+++|..+++++ .+|..++
T Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~----------------~~r~~~~ 313 (480)
T PHA02790 251 YPMNMDQIIDIFHMC-TSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMN----------------SPRLYAS 313 (480)
T ss_pred cCCcccceeeccCCc-ceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCC----------------chhhcce
Confidence 345566677643111 01112238999999876667789999999999999999874 4899999
Q ss_pred EEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEEC
Q 010847 88 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 167 (499)
Q Consensus 88 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 167 (499)
+++++++||++||.... +++++||+.+++|..++ +||.+|.++++++++++||++||.+.. .+.+.+||+
T Consensus 314 ~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp 383 (480)
T PHA02790 314 GVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLP 383 (480)
T ss_pred EEEECCEEEEECCcCCC----CceEEEECCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeC
Confidence 99999999999997532 45999999999999997 899999999999999999999998643 467999999
Q ss_pred CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCE
Q 010847 168 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 247 (499)
Q Consensus 168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 247 (499)
.+++|+.++ ++|.+|.++++++++ +.||++||. +.+||+++++|+.+ +++|.+|..+++++++++
T Consensus 384 ~~~~W~~~~---~m~~~r~~~~~~~~~-~~IYv~GG~--------~e~ydp~~~~W~~~---~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 384 NHDQWQFGP---STYYPHYKSCALVFG-RRLFLVGRN--------AEFYCESSNTWTLI---DDPIYPRDNPELIIVDNK 448 (480)
T ss_pred CCCEEEeCC---CCCCccccceEEEEC-CEEEEECCc--------eEEecCCCCcEeEc---CCCCCCccccEEEEECCE
Confidence 999999986 477899999998884 569999983 67899999999997 578999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847 248 WYIVGGGDNNNGCQETIVLNMTKLAWSILT 277 (499)
Q Consensus 248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~ 277 (499)
|||+||.+.....+.+..||+.+++|+...
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred EEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 999999875555678999999999998653
No 22
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=4e-31 Score=260.12 Aligned_cols=263 Identities=18% Similarity=0.210 Sum_probs=196.6
Q ss_pred CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEEC--CCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcCcCCCC
Q 010847 80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDL--ETNLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR 156 (499)
Q Consensus 80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~t~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~ 156 (499)
|.+|..+++++++++|||+||... +++++||+ .+++|..++ +|| .+|..+++++++++||++||.....
T Consensus 5 p~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 5 PVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence 568888888899999999999742 46899996 578999998 788 5899999999999999999986422
Q ss_pred -----CccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC------------------------
Q 010847 157 -----KLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------------------------ 207 (499)
Q Consensus 157 -----~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~------------------------ 207 (499)
...+++++||+.+++|+.+.. .+|.+|.+++++...+++||++||.+..
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCCC--CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 246899999999999999863 3567777787763346679999998532
Q ss_pred ----------CCCCcEEEEECCCCceEecccCCCCCC-cCcccEEEEECCEEEEEeCCCCCCC-cceEEEEE--CCCCce
Q 010847 208 ----------IFFNDLHVLDLQTNEWSQPEIKGDLVT-GRAGHAGITIDENWYIVGGGDNNNG-CQETIVLN--MTKLAW 273 (499)
Q Consensus 208 ----------~~~~~i~~~d~~~~~W~~~~~~~~~p~-~r~~~~~~~~~~~l~v~GG~~~~~~-~~~~~~~d--~~~~~W 273 (499)
..++++++||+.+++|+.+ +++|. +|+.|+++.++++|||+||...... ..+++.|| +.++.|
T Consensus 155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~---~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HHhCCChhHcCccceEEEEECCCCceeEC---ccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 1247899999999999997 56775 6899999999999999999754332 24566565 567799
Q ss_pred EEeccCCCCCCCCCCCCc-eEEEEEcCceEEEEEcCCCCC------------------CCceEEEEECCCCCCCCCcccC
Q 010847 274 SILTSVKGRNPLASEGLS-VCSAIIEGEHHLVAFGGYNGK------------------YNNEVFVMRLKPRDIPRPKIFQ 334 (499)
Q Consensus 274 ~~l~~~~~~~p~~~~~~~-~~~~~~~~~~~l~v~GG~~~~------------------~~~~~~~~~~~~~~W~~~~~~~ 334 (499)
+.++.++........+.. +.+++++ +.|||+||.+.. ....+.+||+..++|.....+|
T Consensus 232 ~~~~~m~~~r~~~~~~~~~~~a~~~~--~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp 309 (346)
T TIGR03547 232 NKLPPLPPPKSSSQEGLAGAFAGISN--GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLP 309 (346)
T ss_pred eecCCCCCCCCCccccccEEeeeEEC--CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCC
Confidence 999887643211111212 2233444 479999997521 1135788999999999999999
Q ss_pred Cchhhhhhhh-hHHHHHhcccccc
Q 010847 335 SPAAAAAAAS-VTAAYALAKSEKL 357 (499)
Q Consensus 335 ~~~~~~~~~~-~~~~~~~~~~~~~ 357 (499)
.++..++.++ -..+|+++|....
T Consensus 310 ~~~~~~~~~~~~~~iyv~GG~~~~ 333 (346)
T TIGR03547 310 QGLAYGVSVSWNNGVLLIGGENSG 333 (346)
T ss_pred CCceeeEEEEcCCEEEEEeccCCC
Confidence 8877665543 4558888887543
No 23
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=100.00 E-value=1e-31 Score=247.67 Aligned_cols=248 Identities=25% Similarity=0.429 Sum_probs=201.6
Q ss_pred CCCCCccceeEEEE--CCEEEEEcccCCCCC---CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcC
Q 010847 78 EVLPPMSDHCMVKW--GTKLLILGGHYKKSS---DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGG 151 (499)
Q Consensus 78 ~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~---~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG 151 (499)
.+|.||.++++++. .+.|++|||-..+.. .++++|+||+.++.|..+... +.|+||++|.++++. |.||+|||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEEecc
Confidence 44678999988876 478999999654433 678999999999999998753 688899999999886 89999999
Q ss_pred cCCCCC-----ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCC----CCCCCcEEEEECCCCc
Q 010847 152 EDRSRK-----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSH----SIFFNDLHVLDLQTNE 222 (499)
Q Consensus 152 ~~~~~~-----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~----~~~~~~i~~~d~~~~~ 222 (499)
--.+-. ...++|.||+.+++|.++...| .|.||++|-|++... +|++|||.-. ..++|++|+||+++-+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~-~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKR-QLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeee-eEEEEcceecCCCceEEeeeeEEEecccee
Confidence 643211 3579999999999999999865 799999999999955 5999999743 3579999999999999
Q ss_pred eEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCC---------CCCcceEEEEECCC-----CceEEeccCCCCCCCCC
Q 010847 223 WSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDN---------NNGCQETIVLNMTK-----LAWSILTSVKGRNPLAS 287 (499)
Q Consensus 223 W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~---------~~~~~~~~~~d~~~-----~~W~~l~~~~~~~p~~~ 287 (499)
|.++++.+..|.||++|.+++. .+.|||.||+.. ....+|+|.+++.+ -.|+.+.+ .+..|.+|
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp-~g~kPspR 297 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP-SGVKPSPR 297 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC-CCCCCCCC
Confidence 9999988889999999999988 889999999842 22368999999988 57888865 44557788
Q ss_pred CCCceEEEEEcCceEEEEEcCCC----------CCCCceEEEEECCCCCCCCCcc
Q 010847 288 EGLSVCSAIIEGEHHLVAFGGYN----------GKYNNEVFVMRLKPRDIPRPKI 332 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~l~v~GG~~----------~~~~~~~~~~~~~~~~W~~~~~ 332 (499)
.|.+.+.+ .++..+.|||.. +.+.||+|.||+..+.|.....
T Consensus 298 sgfsv~va---~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 298 SGFSVAVA---KNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CceeEEEe---cCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 88765433 233578899975 3468999999999999976643
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.98 E-value=1.3e-30 Score=258.23 Aligned_cols=243 Identities=22% Similarity=0.345 Sum_probs=184.2
Q ss_pred CccccCC--CCCeEEcccCCCCC-Ccccc--------eEEEEcCCCC------CcccCcEEEEEcCCCceEEeeeCcccc
Q 010847 5 SWHLELP--YDLWVTLPVSGARP-SPRYK--------KLYIVGGSRN------GRFLSDVQVFDLRSLAWSNLRLETELD 67 (499)
Q Consensus 5 ~~~~~~~--~~~W~~~~~~~~~p-~~r~~--------~l~~~GG~~~------~~~~~~~~~yd~~t~~W~~~~~~~~~~ 67 (499)
.|.||+. .+.|..++ ++| .+|.+ +|||+||... ...++++++||+.+++|+.++++.
T Consensus 52 ~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~--- 125 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRS--- 125 (376)
T ss_pred EEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCC---
Confidence 4667764 58999998 444 35655 8999999754 134789999999999999987521
Q ss_pred cCccccCCCCCCCCCccceeEEE-ECCEEEEEcccCCCC---------------------------------CCCceEEE
Q 010847 68 ADKTEDSGLLEVLPPMSDHCMVK-WGTKLLILGGHYKKS---------------------------------SDSMIVRF 113 (499)
Q Consensus 68 ~~~~~~~~~~~~p~~r~~~s~~~-~~~~iyv~GG~~~~~---------------------------------~~~~~~~~ 113 (499)
|.++.+|++++ .+++||++||..... ...+++++
T Consensus 126 ------------p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~ 193 (376)
T PRK14131 126 ------------PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLS 193 (376)
T ss_pred ------------CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEE
Confidence 45677888877 899999999975310 01467999
Q ss_pred EECCCCcEEEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEE--EECCCCeeEEeeecCCCCCCCcc---
Q 010847 114 IDLETNLCGVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHF--LDLETMTWDAVEVTQTPPAPRYD--- 187 (499)
Q Consensus 114 yd~~t~~W~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~--yd~~t~~W~~~~~~~~~p~~r~~--- 187 (499)
||+.+++|+.+. ++|. +|.+++++.++++||++||........++++. ||+.+++|..+.+ +|.+|.+
T Consensus 194 YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~ 267 (376)
T PRK14131 194 YDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD---LPPAPGGSSQ 267 (376)
T ss_pred EECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC---CCCCCcCCcC
Confidence 999999999986 7775 78889999999999999997654333455554 5678899999874 4444432
Q ss_pred -----ceEEEEcCcEEEEEcCCCCCC-----------------CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC
Q 010847 188 -----HSAALHANRYLIVFGGCSHSI-----------------FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID 245 (499)
Q Consensus 188 -----~~~~~~~~~~l~v~GG~~~~~-----------------~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~ 245 (499)
+.++++ ++.|||+||.+... ....+++||+.+++|+.+ +++|.+|..++++.++
T Consensus 268 ~~~~~~~a~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~---~~lp~~r~~~~av~~~ 343 (376)
T PRK14131 268 EGVAGAFAGYS-NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV---GELPQGLAYGVSVSWN 343 (376)
T ss_pred CccceEeceeE-CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc---CcCCCCccceEEEEeC
Confidence 223445 55699999975321 113467899999999987 6789999999999999
Q ss_pred CEEEEEeCCCCC-CCcceEEEEECCCCceEE
Q 010847 246 ENWYIVGGGDNN-NGCQETIVLNMTKLAWSI 275 (499)
Q Consensus 246 ~~l~v~GG~~~~-~~~~~~~~~d~~~~~W~~ 275 (499)
++|||+||.... ...++++.|++..+.++.
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 999999997543 457899999988877654
No 25
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=3.8e-29 Score=254.68 Aligned_cols=210 Identities=14% Similarity=0.180 Sum_probs=175.2
Q ss_pred EEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEEC
Q 010847 88 MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDL 167 (499)
Q Consensus 88 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~ 167 (499)
.+..++.||++||..... ..++++.||+.+++|..++ +||.+|..+++++++++||++||.+. .+++++||+
T Consensus 267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp 338 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFH 338 (480)
T ss_pred eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCC----CCceEEEEC
Confidence 345899999999986543 3678999999999999998 89999999999999999999999753 256999999
Q ss_pred CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCE
Q 010847 168 ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDEN 247 (499)
Q Consensus 168 ~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~ 247 (499)
.+++|..++ ++|.+|.+|+++++ ++.||++||.... .+.+.+||+.+++|+.+ ++++.+|..|++++++++
T Consensus 339 ~~n~W~~~~---~l~~~r~~~~~~~~-~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~---~~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 339 GDAAWVNMP---SLLKPRCNPAVASI-NNVIYVIGGHSET--DTTTEYLLPNHDQWQFG---PSTYYPHYKSCALVFGRR 409 (480)
T ss_pred CCCeEEECC---CCCCCCcccEEEEE-CCEEEEecCcCCC--CccEEEEeCCCCEEEeC---CCCCCccccceEEEECCE
Confidence 999999886 57889999999988 5569999998543 36799999999999996 678999999999999999
Q ss_pred EEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCC-CCceEEEEECCCCC
Q 010847 248 WYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGK-YNNEVFVMRLKPRD 326 (499)
Q Consensus 248 l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~~~~~~ 326 (499)
|||+||. +.+||+.+++|+.+++++. +|.++. ++++++ .||++||.++. ..+.+.+||+..++
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~~m~~----~r~~~~--~~v~~~--~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLIDDPIY----PRDNPE--LIIVDN--KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcCCCCC----CccccE--EEEECC--EEEEECCcCCCcccceEEEEECCCCe
Confidence 9999983 5789999999999987643 344443 344554 69999998643 35789999999999
Q ss_pred CCCC
Q 010847 327 IPRP 330 (499)
Q Consensus 327 W~~~ 330 (499)
|...
T Consensus 474 W~~~ 477 (480)
T PHA02790 474 WNIW 477 (480)
T ss_pred EEec
Confidence 9754
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=5.2e-30 Score=241.82 Aligned_cols=279 Identities=23% Similarity=0.375 Sum_probs=224.3
Q ss_pred CCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCC
Q 010847 54 SLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA 133 (499)
Q Consensus 54 t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~ 133 (499)
--+|+.+.... +..|.+|.+|.++++..-|.+|||-+..- .+.+.+||..+++|......|+.|.+
T Consensus 16 ~~rWrrV~~~t------------GPvPrpRHGHRAVaikELiviFGGGNEGi--iDELHvYNTatnqWf~PavrGDiPpg 81 (830)
T KOG4152|consen 16 VVRWRRVQQST------------GPVPRPRHGHRAVAIKELIVIFGGGNEGI--IDELHVYNTATNQWFAPAVRGDIPPG 81 (830)
T ss_pred ccceEEEeccc------------CCCCCccccchheeeeeeEEEecCCcccc--hhhhhhhccccceeecchhcCCCCCc
Confidence 45799987654 67788999999999999999999966543 56799999999999999999999999
Q ss_pred CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeee----cCCCCCCCccceEEEEcCcEEEEEcCCCCC--
Q 010847 134 RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEV----TQTPPAPRYDHSAALHANRYLIVFGGCSHS-- 207 (499)
Q Consensus 134 r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~----~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~-- 207 (499)
...|.++..+.+||+|||...-+.|+|++|.+......|+++.+ .|.+|.||-+|+...+++ +.|+|||..+.
T Consensus 82 cAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gn-KcYlFGGLaNdse 160 (830)
T KOG4152|consen 82 CAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGN-KCYLFGGLANDSE 160 (830)
T ss_pred hhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEecc-EeEEecccccccc
Confidence 99999999999999999998888899999999888889998876 477899999999999965 59999997432
Q ss_pred -------CCCCcEEEEECCCCc----eEecccCCCCCCcCcccEEEEE------CCEEEEEeCCCCCCCcceEEEEECCC
Q 010847 208 -------IFFNDLHVLDLQTNE----WSQPEIKGDLVTGRAGHAGITI------DENWYIVGGGDNNNGCQETIVLNMTK 270 (499)
Q Consensus 208 -------~~~~~i~~~d~~~~~----W~~~~~~~~~p~~r~~~~~~~~------~~~l~v~GG~~~~~~~~~~~~~d~~~ 270 (499)
.++||+|++++.-+. |..+...+..|.+|..|+++++ ..++||+||.++- .+.|+|.+|+.+
T Consensus 161 DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~T 239 (830)
T KOG4152|consen 161 DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDT 239 (830)
T ss_pred CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecce
Confidence 479999999997553 9998888999999999999988 2379999997543 478999999999
Q ss_pred CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC-----C----------CCCceEEEEECCCCCCCCCc----
Q 010847 271 LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-----G----------KYNNEVFVMRLKPRDIPRPK---- 331 (499)
Q Consensus 271 ~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-----~----------~~~~~~~~~~~~~~~W~~~~---- 331 (499)
..|.+. .+.+..|.+|.-|+...+ .+.||||||.- + +..+.+-++++++..|...-
T Consensus 240 l~W~kp-~~~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ 314 (830)
T KOG4152|consen 240 LTWNKP-SLSGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTL 314 (830)
T ss_pred eecccc-cccCCCCCCcccccceee----cceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccc
Confidence 999984 566777888766664433 35799999962 0 23566778889888896642
Q ss_pred ---ccCCchhhhhhhhhHH-HHHhcc
Q 010847 332 ---IFQSPAAAAAAASVTA-AYALAK 353 (499)
Q Consensus 332 ---~~~~~~~~~~~~~~~~-~~~~~~ 353 (499)
..|.++..|+++.+.. +|+-+|
T Consensus 315 ed~tiPR~RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 315 EDNTIPRARAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred cccccccccccceeEEeccEEEEEec
Confidence 2455555555555443 344343
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.79 E-value=6.3e-18 Score=154.98 Aligned_cols=267 Identities=17% Similarity=0.243 Sum_probs=193.3
Q ss_pred CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCC--CcEEEeecCCCCC-CCCcceEEEEECCEEEEEcCcCCCC
Q 010847 80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET--NLCGVMETSGKVP-VARGGHSVTLVGSRLIIFGGEDRSR 156 (499)
Q Consensus 80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t--~~W~~~~~~g~~p-~~r~~~~~~~~~~~lyv~GG~~~~~ 156 (499)
|.+.-+-+-+.+++.+||-=|..+. +.+..|+.. ..|+.++ ..| .+|.+..+++++++||+|||.....
T Consensus 34 Pvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a---~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~ 105 (381)
T COG3055 34 PVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIA---DFPGGARNQAVAAVIGGKLYVFGGYGKSV 105 (381)
T ss_pred CccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcc---cCCCcccccchheeeCCeEEEeeccccCC
Confidence 4566666788889999998774333 267777654 5899998 666 5788889999999999999987543
Q ss_pred C----ccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC-------------------------
Q 010847 157 K----LLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS------------------------- 207 (499)
Q Consensus 157 ~----~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~------------------------- 207 (499)
. ..|++|.||+.+++|.++.+ ..|....++.++.+++..|+++||++..
T Consensus 106 ~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 106 SSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 2 57899999999999999987 4577888999999988789999998521
Q ss_pred ---------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC-CcceEEEEEC--CCCceEE
Q 010847 208 ---------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNM--TKLAWSI 275 (499)
Q Consensus 208 ---------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~--~~~~W~~ 275 (499)
....++..|++.+++|+.+- ..+-.++++++.+.-++++.++-|.-... ....++++++ ...+|..
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G--~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLG--ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcC--cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 13557999999999999972 13445677766666677788887754333 2334566665 4568999
Q ss_pred eccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC--------------------CCCCceEEEEECCCCCCCCCcccCC
Q 010847 276 LTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN--------------------GKYNNEVFVMRLKPRDIPRPKIFQS 335 (499)
Q Consensus 276 l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~--------------------~~~~~~~~~~~~~~~~W~~~~~~~~ 335 (499)
++++|.+......+..-...-.. .+.++|.||.+ ..+.++||.|| .++|+.+..+|.
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s-~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~ 338 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKS-NGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ 338 (381)
T ss_pred ccCCCCCCCCCccccceecccee-CCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC
Confidence 98877654333344433333222 35678888864 13678899999 889999999998
Q ss_pred chhhhhhh-hhHHHHHhcccccccCcc
Q 010847 336 PAAAAAAA-SVTAAYALAKSEKLDIPK 361 (499)
Q Consensus 336 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 361 (499)
+....... ..+.+|.++|+.....+.
T Consensus 339 ~l~YG~s~~~nn~vl~IGGE~~~Gka~ 365 (381)
T COG3055 339 GLAYGVSLSYNNKVLLIGGETSGGKAT 365 (381)
T ss_pred CccceEEEecCCcEEEEccccCCCeee
Confidence 77655443 345688888887665543
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=6.1e-16 Score=142.05 Aligned_cols=257 Identities=18% Similarity=0.249 Sum_probs=178.0
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCC--CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCC--
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRS--LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSS-- 106 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t--~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~-- 106 (499)
.+||-=|..+. ..+.+|+.. ..|..++..+. .+|.+..+++++++||+|||......
T Consensus 48 ~~YVGLGs~G~----afy~ldL~~~~k~W~~~a~FpG---------------~~rnqa~~a~~~~kLyvFgG~Gk~~~~~ 108 (381)
T COG3055 48 TVYVGLGSAGT----AFYVLDLKKPGKGWTKIADFPG---------------GARNQAVAAVIGGKLYVFGGYGKSVSSS 108 (381)
T ss_pred eEEEEeccCCc----cceehhhhcCCCCceEcccCCC---------------cccccchheeeCCeEEEeeccccCCCCC
Confidence 66665453333 467888864 58999997753 48999999999999999999865443
Q ss_pred --CCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcCcCC-----------------------------
Q 010847 107 --DSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDR----------------------------- 154 (499)
Q Consensus 107 --~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~----------------------------- 154 (499)
..+++|+||+.+++|.++.+ ..|....+++++..++ +||++||.+.
T Consensus 109 ~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~ 186 (381)
T COG3055 109 PQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFD 186 (381)
T ss_pred ceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhC
Confidence 56789999999999999986 5677788999999888 9999999752
Q ss_pred ----CCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC-CCCCCCCcEEEEECC--CCceEecc
Q 010847 155 ----SRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC-SHSIFFNDLHVLDLQ--TNEWSQPE 227 (499)
Q Consensus 155 ----~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~-~~~~~~~~i~~~d~~--~~~W~~~~ 227 (499)
+.....++..|++.++.|+.+.. .+-.++++. ++++.++.+.++-|. -..-++..+++++.. ..+|..+.
T Consensus 187 ~~~~dy~~n~ev~sy~p~~n~W~~~G~--~pf~~~aGs-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 187 KKAEDYFFNKEVLSYDPSTNQWRNLGE--NPFYGNAGS-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred CCHHHhcccccccccccccchhhhcCc--CcccCccCc-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 11246789999999999988753 233456664 445556656666665 445567778888775 45699873
Q ss_pred cCCCCCCc-------CcccEEEEECCEEEEEeCCCC--------------CC-----CcceEEEEECCCCceEEeccCCC
Q 010847 228 IKGDLVTG-------RAGHAGITIDENWYIVGGGDN--------------NN-----GCQETIVLNMTKLAWSILTSVKG 281 (499)
Q Consensus 228 ~~~~~p~~-------r~~~~~~~~~~~l~v~GG~~~--------------~~-----~~~~~~~~d~~~~~W~~l~~~~~ 281 (499)
++|.+ .+++-.-..++.++|.||.+- +. ..+++|+|| .+.|+.+..+|.
T Consensus 264 ---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~ 338 (381)
T COG3055 264 ---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ 338 (381)
T ss_pred ---CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC
Confidence 33333 333334455788888888431 11 245788888 999999988865
Q ss_pred CCCCCCCCCceEEEEEcCceEEEEEcCCCC--CCCceEEEEECCC
Q 010847 282 RNPLASEGLSVCSAIIEGEHHLVAFGGYNG--KYNNEVFVMRLKP 324 (499)
Q Consensus 282 ~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~--~~~~~~~~~~~~~ 324 (499)
.. ...+.+.. .+-++++||.+. .....++.+....
T Consensus 339 ~l-------~YG~s~~~-nn~vl~IGGE~~~Gka~~~v~~l~~~g 375 (381)
T COG3055 339 GL-------AYGVSLSY-NNKVLLIGGETSGGKATTRVYSLSWDG 375 (381)
T ss_pred Cc-------cceEEEec-CCcEEEEccccCCCeeeeeEEEEEEcC
Confidence 21 22222222 346888899863 4566676665443
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.64 E-value=9.6e-17 Score=152.31 Aligned_cols=256 Identities=20% Similarity=0.260 Sum_probs=184.4
Q ss_pred CCCCCeEEcccCC-------CCCCcccc----------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccc
Q 010847 10 LPYDLWVTLPVSG-------ARPSPRYK----------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTE 72 (499)
Q Consensus 10 ~~~~~W~~~~~~~-------~~p~~r~~----------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~ 72 (499)
|...+|..++..- ..|..|.+ +||+.||+++.+.++++|.|....+.|+.+-.-.
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-------- 307 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-------- 307 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC--------
Confidence 4556899888665 57888887 9999999999999999999999999999987643
Q ss_pred cCCCCCCCCCccceeEEEECC--EEEEEcccCCCCC-----CCceEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE
Q 010847 73 DSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSS-----DSMIVRFIDLETNLCGVMETS---GKVPVARGGHSVTLV 142 (499)
Q Consensus 73 ~~~~~~~p~~r~~~s~~~~~~--~iyv~GG~~~~~~-----~~~~~~~yd~~t~~W~~~~~~---g~~p~~r~~~~~~~~ 142 (499)
-.|-.|+.|.+|..-. +||+.|-+-+... ..+++|+||..++.|..+.-. .-.|.....|.|++.
T Consensus 308 -----~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd 382 (723)
T KOG2437|consen 308 -----EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVD 382 (723)
T ss_pred -----CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEe
Confidence 2477999999998865 9999998754432 456899999999999988732 236888999999999
Q ss_pred CCE--EEEEcCcCCC--CCccCcEEEEECCCCeeEEeeec----C---CCCCCCccceEEEEc-CcEEEEEcCCCCCCCC
Q 010847 143 GSR--LIIFGGEDRS--RKLLNDVHFLDLETMTWDAVEVT----Q---TPPAPRYDHSAALHA-NRYLIVFGGCSHSIFF 210 (499)
Q Consensus 143 ~~~--lyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~~----~---~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~ 210 (499)
+++ ||||||+.-. ......+|.||.....|..+... + .....|.+|+|-.+. +..+|+|||.+...-+
T Consensus 383 ~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El 462 (723)
T KOG2437|consen 383 SEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTEL 462 (723)
T ss_pred cCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEE
Confidence 987 9999997532 22467899999999999877541 0 113467788887664 5679999998776666
Q ss_pred CcEEEEECCCCceEecc---c-CCCCCCcCcccEEEEE---CCEEEEEeCCCCC------CCcceEEEEECCCCceEEec
Q 010847 211 NDLHVLDLQTNEWSQPE---I-KGDLVTGRAGHAGITI---DENWYIVGGGDNN------NGCQETIVLNMTKLAWSILT 277 (499)
Q Consensus 211 ~~i~~~d~~~~~W~~~~---~-~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~------~~~~~~~~~d~~~~~W~~l~ 277 (499)
+-...|++....-..+. . ...+.+.+....-+.+ .+.|.+..|..-. +..+.+|+|++.++.|..+.
T Consensus 463 ~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~ 542 (723)
T KOG2437|consen 463 NLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY 542 (723)
T ss_pred eehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh
Confidence 66677766544322221 0 1112222222222222 3467777775321 23578999999999998874
Q ss_pred c
Q 010847 278 S 278 (499)
Q Consensus 278 ~ 278 (499)
.
T Consensus 543 ~ 543 (723)
T KOG2437|consen 543 K 543 (723)
T ss_pred h
Confidence 3
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.62 E-value=6.7e-16 Score=146.66 Aligned_cols=271 Identities=17% Similarity=0.225 Sum_probs=181.8
Q ss_pred cCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECC--EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCC
Q 010847 52 LRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT--KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK 129 (499)
Q Consensus 52 ~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~ 129 (499)
+.+-.|.++++..... .+-...|..|.||.+|...+ .||++||+++... ..++|.|+...+.|+.+...+.
T Consensus 236 ey~~~W~~i~~~~~~~------~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~-l~DFW~Y~v~e~~W~~iN~~t~ 308 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKG------DGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD-LADFWAYSVKENQWTCINRDTE 308 (723)
T ss_pred cccccccccCchhhcc------cccccCccccCcceEEEeCCCcEEEEecCcccchh-HHHHHhhcCCcceeEEeecCCC
Confidence 4466799988753110 11136688999999998864 9999999998876 7889999999999999987667
Q ss_pred CCCCCcceEEEEECC--EEEEEcCcCCCC-----CccCcEEEEECCCCeeEEeeec---CCCCCCCccceEEEEcCc-EE
Q 010847 130 VPVARGGHSVTLVGS--RLIIFGGEDRSR-----KLLNDVHFLDLETMTWDAVEVT---QTPPAPRYDHSAALHANR-YL 198 (499)
Q Consensus 130 ~p~~r~~~~~~~~~~--~lyv~GG~~~~~-----~~~~~v~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~~~~-~l 198 (499)
.|..|.+|-|+..-. +||+.|-+-+.. ..-.++|.||.+++.|..+.-. ...|...+.|.|++.++. .+
T Consensus 309 ~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~i 388 (723)
T KOG2437|consen 309 GPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMI 388 (723)
T ss_pred CCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceE
Confidence 999999999998765 899999864332 1357899999999999988652 235889999999998653 68
Q ss_pred EEEcCCCCC---CCCCcEEEEECCCCceEecccCC----C---CCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEEEE
Q 010847 199 IVFGGCSHS---IFFNDLHVLDLQTNEWSQPEIKG----D---LVTGRAGHAGITI--DENWYIVGGGDNNNGCQETIVL 266 (499)
Q Consensus 199 ~v~GG~~~~---~~~~~i~~~d~~~~~W~~~~~~~----~---~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~ 266 (499)
|||||..-. ....-+|.||.....|..+...- + ....|-+|.+-.. ++.+|++||......++=+..|
T Consensus 389 yVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y 468 (723)
T KOG2437|consen 389 YVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSY 468 (723)
T ss_pred EEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcc
Confidence 999997522 34567999999999998864311 1 1234666765554 5689999997665544444455
Q ss_pred ECCCCceEEeccC--CCCCCCCCCCCceEEEEEcCceEEEEEcCCC-------CCCCceEEEEECCCCCCCC
Q 010847 267 NMTKLAWSILTSV--KGRNPLASEGLSVCSAIIEGEHHLVAFGGYN-------GKYNNEVFVMRLKPRDIPR 329 (499)
Q Consensus 267 d~~~~~W~~l~~~--~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~-------~~~~~~~~~~~~~~~~W~~ 329 (499)
++....=..+... ......+..++..-++.....+.|.+.-|.. +...+.+|+|++..+.|..
T Consensus 469 ~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~c 540 (723)
T KOG2437|consen 469 DIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSC 540 (723)
T ss_pred eeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhh
Confidence 5433221111110 0000111112222222222234555555553 2246778888888888844
No 31
>PLN02772 guanylate kinase
Probab=99.22 E-value=9e-11 Score=112.80 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=80.8
Q ss_pred CCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC
Q 010847 128 GKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS 207 (499)
Q Consensus 128 g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~ 207 (499)
|-.+.++.+++++++++++|||||.+.....++.+++||..|.+|..+.+.|..|.+|.+|+++.+++++|+|+++.+..
T Consensus 19 ~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 19 GFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred CccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 34556899999999999999999988766578999999999999999999999999999999999999999999986544
Q ss_pred CCCCcEEEEECCCC
Q 010847 208 IFFNDLHVLDLQTN 221 (499)
Q Consensus 208 ~~~~~i~~~d~~~~ 221 (499)
-.++|.+.+.|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 377899887764
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.20 E-value=4.6e-11 Score=81.21 Aligned_cols=50 Identities=30% Similarity=0.346 Sum_probs=45.4
Q ss_pred CccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCC
Q 010847 82 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR 134 (499)
Q Consensus 82 ~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 134 (499)
||.+|++++++++|||+||........+++++||+.+++|+.++ +||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58999999999999999999885556889999999999999998 899876
No 33
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.4e-10 Score=78.85 Aligned_cols=50 Identities=46% Similarity=0.766 Sum_probs=44.5
Q ss_pred CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847 133 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 185 (499)
Q Consensus 133 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r 185 (499)
+|.+|++++++++||||||.......++++++||+.+++|+.++ ++|.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~---~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP---PMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC---CCCCCC
Confidence 58899999999999999999886567999999999999999997 466665
No 34
>PLN02772 guanylate kinase
Probab=99.02 E-value=2.4e-09 Score=103.08 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=75.7
Q ss_pred CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCc
Q 010847 80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKL 158 (499)
Q Consensus 80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~ 158 (499)
+.++.+|+++++++++|||||.+......+.+++||..|++|..+...|..|.+|.+|++++++ ++|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 4489999999999999999998776545789999999999999999999999999999999995 699999876654
Q ss_pred cCcEEEEECCC
Q 010847 159 LNDVHFLDLET 169 (499)
Q Consensus 159 ~~~v~~yd~~t 169 (499)
..++|.+.+.|
T Consensus 99 ~~~~w~l~~~t 109 (398)
T PLN02772 99 DDSIWFLEVDT 109 (398)
T ss_pred ccceEEEEcCC
Confidence 35788888776
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.99 E-value=1.2e-09 Score=73.77 Aligned_cols=48 Identities=42% Similarity=0.758 Sum_probs=42.3
Q ss_pred CCEEEEEcCcC-CCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE
Q 010847 143 GSRLIIFGGED-RSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH 193 (499)
Q Consensus 143 ~~~lyv~GG~~-~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~ 193 (499)
+++||||||.+ .....+|++|.||+.+++|+.+ +++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 4455789999999999999988 578999999999864
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.94 E-value=2e-09 Score=72.60 Aligned_cols=47 Identities=43% Similarity=0.730 Sum_probs=42.1
Q ss_pred CcEEEEEcCCC--CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE
Q 010847 195 NRYLIVFGGCS--HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI 244 (499)
Q Consensus 195 ~~~l~v~GG~~--~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~ 244 (499)
+++||||||.+ ....+|++|+||+.+++|+.+ +++|.+|++|++++|
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 35699999998 678899999999999999998 779999999999874
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.92 E-value=1.9e-09 Score=72.18 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=40.3
Q ss_pred CccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee
Q 010847 82 PMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME 125 (499)
Q Consensus 82 ~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~ 125 (499)
||.+|++++++++||++||........+++++||+.+++|+.++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 58999999999999999999985566899999999999999998
No 38
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.91 E-value=5e-08 Score=87.50 Aligned_cols=137 Identities=20% Similarity=0.317 Sum_probs=95.7
Q ss_pred CCCCCCcceEEEEEC---C---EEEEEcCcCCCCCccCcEEEEECCCCe--------eEEeeecCCCCCCCccceEEEEc
Q 010847 129 KVPVARGGHSVTLVG---S---RLIIFGGEDRSRKLLNDVHFLDLETMT--------WDAVEVTQTPPAPRYDHSAALHA 194 (499)
Q Consensus 129 ~~p~~r~~~~~~~~~---~---~lyv~GG~~~~~~~~~~v~~yd~~t~~--------W~~~~~~~~~p~~r~~~~~~~~~ 194 (499)
-+|+-|+-+.+..-+ + .-++.||.+.+...++.+|++.+.+.. ..+-...|+.|.+|++|++.++.
T Consensus 18 YLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~ 97 (337)
T PF03089_consen 18 YLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVH 97 (337)
T ss_pred cCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEE
Confidence 356556554444312 2 355669999988888999999886543 23333358999999999997763
Q ss_pred ---CcEEEEEcCCCCC--------------CCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCC
Q 010847 195 ---NRYLIVFGGCSHS--------------IFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNN 257 (499)
Q Consensus 195 ---~~~l~v~GG~~~~--------------~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 257 (499)
....++|||..-- .+...|+.+|+.-+..+.-.. +.+..+.++|.+..-+|.+|++||..-.
T Consensus 98 SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 98 SRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred ECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 3467899997411 245568999999888776432 5567788899999999999999997544
Q ss_pred CC--cceEEEE
Q 010847 258 NG--CQETIVL 266 (499)
Q Consensus 258 ~~--~~~~~~~ 266 (499)
.. ...++++
T Consensus 177 sd~Rpp~l~rl 187 (337)
T PF03089_consen 177 SDSRPPRLYRL 187 (337)
T ss_pred CCCCCCcEEEE
Confidence 33 3345544
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.88 E-value=5.6e-09 Score=70.44 Aligned_cols=46 Identities=33% Similarity=0.580 Sum_probs=40.5
Q ss_pred CCcceEEEEECCEEEEEcCc--CCCCCccCcEEEEECCCCeeEEeeec
Q 010847 133 ARGGHSVTLVGSRLIIFGGE--DRSRKLLNDVHFLDLETMTWDAVEVT 178 (499)
Q Consensus 133 ~r~~~~~~~~~~~lyv~GG~--~~~~~~~~~v~~yd~~t~~W~~~~~~ 178 (499)
+|.+|++++++++||||||+ .......+++++||+.+++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 58999999999999999999 44445789999999999999998754
No 40
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.87 E-value=4.9e-09 Score=70.21 Aligned_cols=46 Identities=33% Similarity=0.630 Sum_probs=41.6
Q ss_pred CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeec
Q 010847 133 ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVT 178 (499)
Q Consensus 133 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~ 178 (499)
||.+|++++++++||++||.+.....++++++||+.+++|..++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 5899999999999999999998666899999999999999999853
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.82 E-value=1.2e-08 Score=68.78 Aligned_cols=44 Identities=30% Similarity=0.315 Sum_probs=38.8
Q ss_pred CccceeEEEECCEEEEEccc--CCCCCCCceEEEEECCCCcEEEee
Q 010847 82 PMSDHCMVKWGTKLLILGGH--YKKSSDSMIVRFIDLETNLCGVME 125 (499)
Q Consensus 82 ~r~~~s~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~t~~W~~~~ 125 (499)
||.+|++++++++|||+||+ .......+++++||+.+.+|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 58999999999999999999 333346889999999999999997
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.80 E-value=6.9e-09 Score=70.12 Aligned_cols=44 Identities=39% Similarity=0.699 Sum_probs=30.6
Q ss_pred CCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847 133 ARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 176 (499)
Q Consensus 133 ~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 176 (499)
||.+|+++.+ +++||||||.+.....++++++||+.+++|+++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 5899999998 5899999999887668999999999999999994
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.79 E-value=6.7e-09 Score=70.19 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=31.6
Q ss_pred CccceeEEEE-CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCC
Q 010847 82 PMSDHCMVKW-GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVP 131 (499)
Q Consensus 82 ~r~~~s~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p 131 (499)
||.+|+++.+ +++||||||.+......+++++||+.+++|+.++ ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC---CCC
Confidence 5999999999 5899999999887656889999999999999995 666
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.78 E-value=8.4e-07 Score=80.75 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=111.7
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCC----CeeEEeeecCCCCCCCc
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET----MTWDAVEVTQTPPAPRY 186 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t----~~W~~~~~~~~~p~~r~ 186 (499)
-..||+.+++++.+.. ..-..+...+..-++++++.||.... ...+..|++.+ ..|.+... .|-.+|.
T Consensus 48 s~~yD~~tn~~rpl~v---~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV---QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEeccC---CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCCCc
Confidence 5669999999998863 22222233334457899999998653 45688888865 57987763 4778999
Q ss_pred cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECC-C-----CceEeccc-CCCCCCcCcccEEEEECCEEEEEeCCCCCCC
Q 010847 187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-T-----NEWSQPEI-KGDLVTGRAGHAGITIDENWYIVGGGDNNNG 259 (499)
Q Consensus 187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~-----~~W~~~~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~ 259 (499)
+.+++.+.|+.++|+||.. +..+.|-+. . ..|..+.. ....+...+-+....-+++||+++..
T Consensus 120 YpT~~~L~DG~vlIvGG~~-----~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~----- 189 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSN-----NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR----- 189 (243)
T ss_pred cccceECCCCCEEEEeCcC-----CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-----
Confidence 9999999999999999986 222333332 1 11222211 11233344445555558899999873
Q ss_pred cceEEEEECCCCce-EEeccCCCCC-CCCCCCCceEEEEE------cCceEEEEEcC
Q 010847 260 CQETIVLNMTKLAW-SILTSVKGRN-PLASEGLSVCSAII------EGEHHLVAFGG 308 (499)
Q Consensus 260 ~~~~~~~d~~~~~W-~~l~~~~~~~-p~~~~~~~~~~~~~------~~~~~l~v~GG 308 (499)
+..+||..++++ +.++.+|+.. ..+..|. ++...+ .-...|+|+||
T Consensus 190 --~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgs-svmLPl~~~~~~~~~~evlvCGG 243 (243)
T PF07250_consen 190 --GSIIYDYKTNTVVRTLPDLPGGPRNYPASGS-SVMLPLTDTPPNNYTAEVLVCGG 243 (243)
T ss_pred --CcEEEeCCCCeEEeeCCCCCCCceecCCCcc-eEEecCccCCCCCCCeEEEEeCC
Confidence 457899999987 7888887652 1122222 222223 11456888887
No 45
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.72 E-value=5.4e-06 Score=74.71 Aligned_cols=180 Identities=22% Similarity=0.265 Sum_probs=108.3
Q ss_pred CCCCCCccceeEEEE-C------CEEEEEcccCCCCCCCceEEEEECCCCc--------EEEeecCCCCCCCCcceEEEE
Q 010847 77 LEVLPPMSDHCMVKW-G------TKLLILGGHYKKSSDSMIVRFIDLETNL--------CGVMETSGKVPVARGGHSVTL 141 (499)
Q Consensus 77 ~~~p~~r~~~s~~~~-~------~~iyv~GG~~~~~~~~~~~~~yd~~t~~--------W~~~~~~g~~p~~r~~~~~~~ 141 (499)
++..||....+++.+ + ..-++.||.+.+....+++|+....+.. .......|+.|.+|++|++.+
T Consensus 16 SCYLPPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~v 95 (337)
T PF03089_consen 16 SCYLPPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINV 95 (337)
T ss_pred cccCCCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEE
Confidence 455566556666665 2 2355679988887767788888766543 223334589999999999987
Q ss_pred EC--C--EEEEEcCcCCC-------------CCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC
Q 010847 142 VG--S--RLIIFGGEDRS-------------RKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 204 (499)
Q Consensus 142 ~~--~--~lyv~GG~~~~-------------~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 204 (499)
+. + -.++|||...- -.+...|+.+|+.-+-.+.-.. ..+-.+.+.|.+.+- ++.+|++||.
T Consensus 96 V~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar-~D~VYilGGH 173 (337)
T PF03089_consen 96 VHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLAR-NDCVYILGGH 173 (337)
T ss_pred EEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEec-CceEEEEccE
Confidence 73 2 48899997521 1245678999998776655432 245567788888776 5569999997
Q ss_pred CC--CCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEE--E-CCEEEEEeCCCCCC
Q 010847 205 SH--SIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGIT--I-DENWYIVGGGDNNN 258 (499)
Q Consensus 205 ~~--~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~ 258 (499)
.- +.+...++++..+--.=+.+-...-++...+..++++ + .+..+|+||+....
T Consensus 174 sl~sd~Rpp~l~rlkVdLllGSP~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 174 SLESDSRPPRLYRLKVDLLLGSPAVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EccCCCCCCcEEEEEEeecCCCceeEEEECCCCceEeeeeEeecCCCceEEEecccccc
Confidence 53 3444556666432110000000001222333222222 2 35688899986554
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.67 E-value=5.9e-08 Score=62.83 Aligned_cols=41 Identities=39% Similarity=0.686 Sum_probs=36.4
Q ss_pred CCCCCcceEEEEECCEEEEEcCcCC-CCCccCcEEEEECCCC
Q 010847 130 VPVARGGHSVTLVGSRLIIFGGEDR-SRKLLNDVHFLDLETM 170 (499)
Q Consensus 130 ~p~~r~~~~~~~~~~~lyv~GG~~~-~~~~~~~v~~yd~~t~ 170 (499)
+|.+|.+|++++++++||||||... ....+|++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999994 5667999999998763
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.66 E-value=5.8e-08 Score=62.86 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=35.0
Q ss_pred CCCccceeEEEECCEEEEEcccCC-CCCCCceEEEEECCCC
Q 010847 80 LPPMSDHCMVKWGTKLLILGGHYK-KSSDSMIVRFIDLETN 119 (499)
Q Consensus 80 p~~r~~~s~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~t~ 119 (499)
|++|.+|++++++++|||+||... .....+++|+||+.++
T Consensus 2 P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 779999999999999999999984 4446889999998764
No 48
>smart00612 Kelch Kelch domain.
Probab=98.57 E-value=9.6e-08 Score=63.82 Aligned_cols=47 Identities=32% Similarity=0.540 Sum_probs=40.7
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECC
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGT 93 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~ 93 (499)
+||++||..+...++++++||+.+++|+..+++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~----------------~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM----------------PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCC----------------CCccccceEEEeCC
Confidence 589999987767789999999999999999877 45899999888764
No 49
>smart00612 Kelch Kelch domain.
Probab=98.47 E-value=2.6e-07 Score=61.68 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=40.3
Q ss_pred EEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 010847 94 KLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS 144 (499)
Q Consensus 94 ~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~ 144 (499)
+||++||..... ..+++++||+.+++|+..+ +||.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ-RLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc-eeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 489999987533 3788999999999999987 8999999999988764
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.42 E-value=5.3e-05 Score=69.93 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=107.2
Q ss_pred ccccCCCCCeEEcccCCCCCC--cc--cc----------eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCcc
Q 010847 6 WHLELPYDLWVTLPVSGARPS--PR--YK----------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKT 71 (499)
Q Consensus 6 ~~~~~~~~~W~~~~~~~~~p~--~r--~~----------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~ 71 (499)
...||.+++|..||.+..++. .+ .+ +|+.+.....+.....+.+|++.+++|+.+...+
T Consensus 17 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~------- 89 (230)
T TIGR01640 17 VVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSP------- 89 (230)
T ss_pred EEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCC-------
Confidence 467999999999985332101 11 11 3333332211122357889999999999987432
Q ss_pred ccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEE-eecCCCCCCCCc----ceEEEEECCEE
Q 010847 72 EDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV-METSGKVPVARG----GHSVTLVGSRL 146 (499)
Q Consensus 72 ~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~-~~~~g~~p~~r~----~~~~~~~~~~l 146 (499)
+........+.++|.||.+........ ...+..||+.+.+|.. ++ +|..+. ...++.++++|
T Consensus 90 --------~~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L 156 (230)
T TIGR01640 90 --------PHHPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKL 156 (230)
T ss_pred --------CCccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEE
Confidence 111111226778999998875432211 1269999999999995 54 343322 34567778998
Q ss_pred EEEcCcCCCCCccCcEEEEE-CCCCeeEEeeecCCCCCCCcc---ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847 147 IIFGGEDRSRKLLNDVHFLD-LETMTWDAVEVTQTPPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN 221 (499)
Q Consensus 147 yv~GG~~~~~~~~~~v~~yd-~~t~~W~~~~~~~~~p~~r~~---~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~ 221 (499)
.++....... .-++|.++ -....|++.-.....+.+... ......+++.|++..... ...-+..||+.++
T Consensus 157 ~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 157 AVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 8876543211 23677775 335579876554321122111 122233455566655421 0113888888764
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.39 E-value=0.00018 Score=66.41 Aligned_cols=201 Identities=13% Similarity=0.106 Sum_probs=108.7
Q ss_pred eEEEEECCCCcEEEeecCCCCCCC---Ccce-EEEEEC----C-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCC
Q 010847 110 IVRFIDLETNLCGVMETSGKVPVA---RGGH-SVTLVG----S-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQT 180 (499)
Q Consensus 110 ~~~~yd~~t~~W~~~~~~g~~p~~---r~~~-~~~~~~----~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 180 (499)
.+.++||.|++|..++. ++.+ ...+ ....++ . +++.+....... ....+.+|++.+++|+.+...
T Consensus 15 ~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~-- 88 (230)
T TIGR01640 15 RLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS-- 88 (230)
T ss_pred cEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--
Confidence 49999999999999973 2221 1111 111222 2 455554322111 245789999999999998742
Q ss_pred CCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccCCCCCCcC----cccEEEEECCEEEEEeCCC
Q 010847 181 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIKGDLVTGR----AGHAGITIDENWYIVGGGD 255 (499)
Q Consensus 181 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~~~~p~~r----~~~~~~~~~~~l~v~GG~~ 255 (499)
++........+.+ ++.+|-+...........|..||+.+.+|.. +. +|..+ ....++..+++|.++....
T Consensus 89 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 89 PPHHPLKSRGVCI-NGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CCCccccCCeEEE-CCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecC
Confidence 2221222224455 5557666533221111269999999999995 42 23222 2345667788888876532
Q ss_pred CCCCcceEEEEE-CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847 256 NNNGCQETIVLN-MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 325 (499)
Q Consensus 256 ~~~~~~~~~~~d-~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 325 (499)
.. ..-++|+++ -....|+++-.++...............+.+++..++++.... ..-+..||+.++
T Consensus 164 ~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~---~~~~~~y~~~~~ 230 (230)
T TIGR01640 164 DT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDEN---PFYIFYYNVGEN 230 (230)
T ss_pred CC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCC---ceEEEEEeccCC
Confidence 21 124788886 4456799865554321111111122334445544455444211 113788888653
No 52
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.02 E-value=0.00026 Score=64.70 Aligned_cols=151 Identities=19% Similarity=0.271 Sum_probs=92.0
Q ss_pred EEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCC----CceEecccCCCCCCcCc
Q 010847 162 VHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQT----NEWSQPEIKGDLVTGRA 237 (499)
Q Consensus 162 v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~----~~W~~~~~~~~~p~~r~ 237 (499)
-..||+.+++++.+.. +....+.+.+...|+.++++||...+ ...+-.|++.+ ..|.+.. ..+..+|.
T Consensus 48 s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~--~~m~~~RW 119 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESP--NDMQSGRW 119 (243)
T ss_pred EEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECc--ccccCCCc
Confidence 5679999999988764 23444444455668889999998653 34677888765 5688763 35889999
Q ss_pred ccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCC------CceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC
Q 010847 238 GHAGITI-DENWYIVGGGDNNNGCQETIVLNMTK------LAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 310 (499)
Q Consensus 238 ~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~------~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~ 310 (499)
+.++..+ +++++|+||.... .+.|-+.. ..|..+.......+... .-...+..++ .|++++..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nl--YP~~~llPdG--~lFi~an~- 189 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNL--YPFVHLLPDG--NLFIFANR- 189 (243)
T ss_pred cccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCcccc--CceEEEcCCC--CEEEEEcC-
Confidence 9998888 6789999997622 23333321 11222222111111111 1122233333 58888874
Q ss_pred CCCCceEEEEECCCCCC-CCCcccCC
Q 010847 311 GKYNNEVFVMRLKPRDI-PRPKIFQS 335 (499)
Q Consensus 311 ~~~~~~~~~~~~~~~~W-~~~~~~~~ 335 (499)
+..+||.+.+++ ...+.+|.
T Consensus 190 -----~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 190 -----GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred -----CcEEEeCCCCeEEeeCCCCCC
Confidence 456789888866 45555543
No 53
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.71 E-value=0.04 Score=50.77 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=115.4
Q ss_pred cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCcccee--EEEECCEEEEEcccCCCCCCCceEEEEECCCCc-
Q 010847 46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHC--MVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL- 120 (499)
Q Consensus 46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~- 120 (499)
.+.++|+.+++ |+.-... +..+.. .+..++.+|+..+ ...++.+|+.+++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~ 58 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP------------------GIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKV 58 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS------------------SCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEE
T ss_pred EEEEEECCCCCEEEEEECCC------------------CCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence 57889998875 7773211 122222 4447899998842 3459999998885
Q ss_pred -EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC--eeEE-eeecCCCCCCCccceEEEEcCc
Q 010847 121 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDA-VEVTQTPPAPRYDHSAALHANR 196 (499)
Q Consensus 121 -W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~-~~~~~~~p~~r~~~~~~~~~~~ 196 (499)
|+.-. +.+. ....+..++.+|+..+ .+.++.+|..++ .|+. ... ..+.+........+.++
T Consensus 59 ~W~~~~-----~~~~-~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 59 LWRFDL-----PGPI-SGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGD 123 (238)
T ss_dssp EEEEEC-----SSCG-GSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETT
T ss_pred EEEeec-----cccc-cceeeecccccccccc-------eeeeEecccCCcceeeeecccc--ccccccccccCceEecC
Confidence 54442 2221 2224677889988762 236999998776 5884 432 11222222233333366
Q ss_pred EEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCc-----CcccEEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847 197 YLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG-----RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 269 (499)
Q Consensus 197 ~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~ 269 (499)
.+|+... ...++.+|+++++ |......+....+ ......+..++.+|+..+.. .+..+|..
T Consensus 124 ~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~ 191 (238)
T PF13360_consen 124 RLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLA 191 (238)
T ss_dssp EEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETT
T ss_pred EEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECC
Confidence 4555442 2479999999876 7774211111110 01123333357777775522 25666999
Q ss_pred CCc--eEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847 270 KLA--WSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 325 (499)
Q Consensus 270 ~~~--W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 325 (499)
++. |+. + +.. ........++.||+.. .+ ..++.+|+++.
T Consensus 192 tg~~~w~~-~-~~~----------~~~~~~~~~~~l~~~~-~~----~~l~~~d~~tG 232 (238)
T PF13360_consen 192 TGEKLWSK-P-ISG----------IYSLPSVDGGTLYVTS-SD----GRLYALDLKTG 232 (238)
T ss_dssp TTEEEEEE-C-SS-----------ECECEECCCTEEEEEE-TT----TEEEEEETTTT
T ss_pred CCCEEEEe-c-CCC----------ccCCceeeCCEEEEEe-CC----CEEEEEECCCC
Confidence 887 743 2 221 1111222234666655 32 37899998765
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.30 E-value=0.23 Score=49.80 Aligned_cols=173 Identities=13% Similarity=0.092 Sum_probs=96.7
Q ss_pred cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--E
Q 010847 46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 121 (499)
Q Consensus 46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W 121 (499)
.++.||+.+++ |+.-...+. ...+...+.++.++.+|+..+ ...++.+|+.+++ |
T Consensus 171 ~l~ald~~tG~~~W~~~~~~~~--------------~~~~~~~sP~v~~~~v~~~~~-------~g~v~a~d~~~G~~~W 229 (394)
T PRK11138 171 MLQALNESDGAVKWTVNLDVPS--------------LTLRGESAPATAFGGAIVGGD-------NGRVSAVLMEQGQLIW 229 (394)
T ss_pred EEEEEEccCCCEeeeecCCCCc--------------ccccCCCCCEEECCEEEEEcC-------CCEEEEEEccCChhhh
Confidence 58999999886 776432110 011222334455677776443 2348888988874 7
Q ss_pred EEeec--CCCCCC---CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCccceEEEEc
Q 010847 122 GVMET--SGKVPV---ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALHA 194 (499)
Q Consensus 122 ~~~~~--~g~~p~---~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~~ 194 (499)
+.... .+.... .....+-++.++.+|+.+. ...++++|+.+++ |+... +. . ...+ +.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~--~~---~---~~~~-~~ 293 (394)
T PRK11138 230 QQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-------NGNLVALDLRSGQIVWKREY--GS---V---NDFA-VD 293 (394)
T ss_pred eeccccCCCccchhcccccCCCcEEECCEEEEEEc-------CCeEEEEECCCCCEEEeecC--CC---c---cCcE-EE
Confidence 64321 000000 0112334556888887643 2368999998864 86532 11 1 1123 34
Q ss_pred CcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA 272 (499)
Q Consensus 195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 272 (499)
++.+|+.... ..++.+|+.+++ |+... ...+...+.++.++.+|+... + -.++.+|..+++
T Consensus 294 ~~~vy~~~~~------g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~ 356 (394)
T PRK11138 294 GGRIYLVDQN------DRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGR 356 (394)
T ss_pred CCEEEEEcCC------CeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCC
Confidence 6668886532 469999998775 86521 112223344556888876532 1 157888988875
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.04 E-value=0.044 Score=51.59 Aligned_cols=123 Identities=14% Similarity=0.129 Sum_probs=75.4
Q ss_pred EEEcccCCCCC-CCceEEEEECCCCcEEEeecCCCCCCCCcce--EEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847 96 LILGGHYKKSS-DSMIVRFIDLETNLCGVMETSGKVPVARGGH--SVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT 171 (499)
Q Consensus 96 yv~GG~~~~~~-~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~--~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 171 (499)
||-|-+...+. .-..+..||+.+.+|..+.. - ..+. .+... +++||+.|-....+.....+-.||..+.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~---~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN---G---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC---C---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 44443433322 34569999999999999862 2 2222 23333 66788887665544235578999999999
Q ss_pred eEEeeec--CCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847 172 WDAVEVT--QTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEI 228 (499)
Q Consensus 172 W~~~~~~--~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 228 (499)
|..+... ..+|.+....+....+...+++.|... .-..-+..|| ..+|..+..
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 9888762 245656544444333444577766642 2233466664 678999853
No 56
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=97.03 E-value=0.017 Score=54.27 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=72.0
Q ss_pred EEcC-cCCCCC-ccCcEEEEECCCCeeEEeeecCCCCCCCccc--eEEEEcCcEEEEEcCCCCCC-CCCcEEEEECCCCc
Q 010847 148 IFGG-EDRSRK-LLNDVHFLDLETMTWDAVEVTQTPPAPRYDH--SAALHANRYLIVFGGCSHSI-FFNDLHVLDLQTNE 222 (499)
Q Consensus 148 v~GG-~~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~--~~~~~~~~~l~v~GG~~~~~-~~~~i~~~d~~~~~ 222 (499)
++|| +...+. .++.+..||+.+.+|..+.. ...+. ++...+++.+|+.|-..... ....+-.||.++.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~------~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN------GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC------CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 3444 443332 47889999999999998864 12222 22334566677777544333 45668999999999
Q ss_pred eEecccC--CCCCCcCcccEEEEEC-CEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847 223 WSQPEIK--GDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 278 (499)
Q Consensus 223 W~~~~~~--~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~ 278 (499)
|+.+... ...|.+.........+ +.+++.|.. .....-+..| ...+|..+..
T Consensus 76 w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~--~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS--ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEEEEEeeccCCceEEEecee--cCCCceEEEE--cCCceEeccc
Confidence 9988542 2345443222222223 356666654 2223345555 5678988765
No 57
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.98 E-value=0.29 Score=49.16 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=85.5
Q ss_pred eEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCC--CCC---CCCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847 87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG--KVP---VARGGHSVTLVGSRLIIFGGEDRSRKLL 159 (499)
Q Consensus 87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g--~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 159 (499)
+.++.+++||+.+.. ..++.||..++ .|+.-.... ..+ .++...+.+..++++|+.+. .
T Consensus 64 sPvv~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~ 129 (394)
T PRK11138 64 HPAVAYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------K 129 (394)
T ss_pred ccEEECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------C
Confidence 456779999987642 24899998876 486543110 000 11223345667888887432 2
Q ss_pred CcEEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCc
Q 010847 160 NDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTG 235 (499)
Q Consensus 160 ~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~ 235 (499)
..+++||..|+ .|+.-.. + +. ..+.+. .++.+|+..+ .+.++.||+.+++ |+.... .+....
T Consensus 130 g~l~ald~~tG~~~W~~~~~-~----~~-~ssP~v-~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~-~~~~~~ 195 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA-G----EA-LSRPVV-SDGLVLVHTS------NGMLQALNESDGAVKWTVNLD-VPSLTL 195 (394)
T ss_pred CEEEEEECCCCCCcccccCC-C----ce-ecCCEE-ECCEEEEECC------CCEEEEEEccCCCEeeeecCC-CCcccc
Confidence 36999999776 4865431 1 11 112223 3665666433 2369999998876 877421 111111
Q ss_pred CcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCc--eEE
Q 010847 236 RAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLA--WSI 275 (499)
Q Consensus 236 r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~--W~~ 275 (499)
+...+-++.++.+|+..+ + ..++.+|+.++. |+.
T Consensus 196 ~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 196 RGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhhee
Confidence 222233444666655432 2 257888887764 764
No 58
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.97 E-value=0.47 Score=47.23 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=93.5
Q ss_pred cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--E
Q 010847 46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--C 121 (499)
Q Consensus 46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W 121 (499)
.++.||+.++. |+..... ....+.+..++.+|+..+ ...++.+|+.++. |
T Consensus 116 ~l~ald~~tG~~~W~~~~~~-------------------~~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSS-------------------EVLSPPLVANGLVVVRTN-------DGRLTALDAATGERLW 169 (377)
T ss_pred EEEEEECCCCcEeeeeccCc-------------------eeecCCEEECCEEEEECC-------CCeEEEEEcCCCceee
Confidence 68999998775 7653211 112233456777777543 2349999998774 7
Q ss_pred EEeecCCCCCC-CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC--eeEEeeecC--CCCCCC---ccceEEEE
Q 010847 122 GVMETSGKVPV-ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQ--TPPAPR---YDHSAALH 193 (499)
Q Consensus 122 ~~~~~~g~~p~-~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~--~~p~~r---~~~~~~~~ 193 (499)
+.... ..+. .+...+.+..++.+| +|.. ...++.+|+.++ .|+.-.... .....+ ...+. .+
T Consensus 170 ~~~~~--~~~~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p-~~ 239 (377)
T TIGR03300 170 TYSRV--TPALTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP-VV 239 (377)
T ss_pred EEccC--CCceeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc-EE
Confidence 65431 1111 122234455566554 4432 235889998776 475432110 000000 11122 23
Q ss_pred cCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCC
Q 010847 194 ANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 271 (499)
Q Consensus 194 ~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 271 (499)
.++.+|+.+.. ..++.||+.+++ |..-. + ...+.+..++.+|+... ...++.+|..++
T Consensus 240 ~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG 299 (377)
T TIGR03300 240 DGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA------DGVVVALDRRSG 299 (377)
T ss_pred ECCEEEEEEcC------CEEEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC------CCeEEEEECCCC
Confidence 36667765432 369999998765 76521 1 11233456788887642 125889998776
Q ss_pred c--eEE
Q 010847 272 A--WSI 275 (499)
Q Consensus 272 ~--W~~ 275 (499)
. |+.
T Consensus 300 ~~~W~~ 305 (377)
T TIGR03300 300 SELWKN 305 (377)
T ss_pred cEEEcc
Confidence 3 654
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.97 E-value=0.0063 Score=64.47 Aligned_cols=98 Identities=19% Similarity=0.303 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
+..|+.+.+.+...++..++...+|+.++..+...-.....+++++++++++++.++..|.+. .++..+.++.+|++
T Consensus 420 ~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~a---Rq~DKq~l~~LEkr 496 (697)
T PF09726_consen 420 ISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQA---RQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 445666666666666667777777777766666655556666777777777666666655544 33444455566666
Q ss_pred HHHHHHhHHHHHHHHHHhhcc
Q 010847 463 VQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (499)
+...+++++.+|.+|.+.+.+
T Consensus 497 L~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666544433
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.035 Score=53.95 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=87.2
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
-|.+++|+++.- .+|..|=.++.--+---+.. .|......+.-|....+++|.. .-
T Consensus 226 plllvaG~d~~l---rifqvDGk~N~~lqS~~l~~---------------fPi~~a~f~p~G~~~i~~s~rr------ky 281 (514)
T KOG2055|consen 226 PLLLVAGLDGTL---RIFQVDGKVNPKLQSIHLEK---------------FPIQKAEFAPNGHSVIFTSGRR------KY 281 (514)
T ss_pred ceEEEecCCCcE---EEEEecCccChhheeeeecc---------------CccceeeecCCCceEEEecccc------eE
Confidence 678888875442 45666655555221111111 1222222233344377777753 34
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceE
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSA 190 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~ 190 (499)
+|.||+.+.+-.++.....++.+-.....+...+.++++-|..+ -|+.+...|+.|..-- .++.....++.
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------~I~lLhakT~eli~s~---KieG~v~~~~f 352 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------HIHLLHAKTKELITSF---KIEGVVSDFTF 352 (514)
T ss_pred EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------eEEeehhhhhhhhhee---eeccEEeeEEE
Confidence 99999999998888643334433333334444555666666432 4788888888884321 12323344444
Q ss_pred EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847 191 ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW 223 (499)
Q Consensus 191 ~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 223 (499)
.. ++..|++.||++ .||++|+.++..
T Consensus 353 sS-dsk~l~~~~~~G------eV~v~nl~~~~~ 378 (514)
T KOG2055|consen 353 SS-DSKELLASGGTG------EVYVWNLRQNSC 378 (514)
T ss_pred ec-CCcEEEEEcCCc------eEEEEecCCcce
Confidence 33 346788888864 799999988853
No 61
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=96.91 E-value=0.24 Score=45.85 Aligned_cols=188 Identities=15% Similarity=0.062 Sum_probs=105.3
Q ss_pred eEEEEcCCCCCcccCcEEEEEc-----CCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCC
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDL-----RSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKS 105 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~-----~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~ 105 (499)
++|++.|..+. .++.|.- ..+.....-.+ |-+-.|...++++|.+|+--.
T Consensus 32 ~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~L----------------p~~~~GtG~vVYngslYY~~~----- 86 (250)
T PF02191_consen 32 KIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKL----------------PYPWQGTGHVVYNGSLYYNKY----- 86 (250)
T ss_pred CEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEE----------------eceeccCCeEEECCcEEEEec-----
Confidence 89999887654 3444422 23333333222 335677788889999998644
Q ss_pred CCCceEEEEECCCCcEE---EeecCCC---CCCCCcc---eEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847 106 SDSMIVRFIDLETNLCG---VMETSGK---VPVARGG---HSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVE 176 (499)
Q Consensus 106 ~~~~~~~~yd~~t~~W~---~~~~~g~---~p~~r~~---~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 176 (499)
..+.+..||+.++.-. .++..+. .|....+ .-+++.++-|+++-....+.. .-.+..+|+.+..-...-
T Consensus 87 -~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-~ivvskld~~tL~v~~tw 164 (250)
T PF02191_consen 87 -NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-NIVVSKLDPETLSVEQTW 164 (250)
T ss_pred -CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-cEEEEeeCcccCceEEEE
Confidence 2566999999998755 3332111 2222222 234444566777755443321 224566777664322221
Q ss_pred ecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC---CEEEEE
Q 010847 177 VTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID---ENWYIV 251 (499)
Q Consensus 177 ~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~---~~l~v~ 251 (499)
.+ ..+.+..+.+.+++ + .||++...+... ..-.+.||+.+++=..+. -+++.+-..++++..+ ..||+.
T Consensus 165 ~T-~~~k~~~~naFmvC-G-vLY~~~s~~~~~-~~I~yafDt~t~~~~~~~--i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 165 NT-SYPKRSAGNAFMVC-G-VLYATDSYDTRD-TEIFYAFDTYTGKEEDVS--IPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred Ee-ccCchhhcceeeEe-e-EEEEEEECCCCC-cEEEEEEECCCCceecee--eeeccccCceEeeeECCCCCeEEEE
Confidence 11 24445555554444 4 488877654332 344689999888766553 2445555556666664 468877
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.89 E-value=0.025 Score=47.35 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=4.3
Q ss_pred hhhhhHHHHHH
Q 010847 436 RSRCFKLEAQI 446 (499)
Q Consensus 436 ~~~~~~~~~~~ 446 (499)
.++++.|+.++
T Consensus 79 ~rriq~LEeel 89 (143)
T PF12718_consen 79 NRRIQLLEEEL 89 (143)
T ss_pred HhhHHHHHHHH
Confidence 33333333333
No 63
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.88 E-value=0.42 Score=45.29 Aligned_cols=188 Identities=21% Similarity=0.149 Sum_probs=89.8
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
++|+.++.+ ..+.+||+.+++-...-... ..++ +.+...-+..+|+.++. .+.
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~---------------~~~~-~l~~~~dg~~l~~~~~~------~~~ 54 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVG---------------QRPR-GITLSKDGKLLYVCASD------SDT 54 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECC---------------CCCC-ceEECCCCCEEEEEECC------CCe
Confidence 467777643 36889999887643322211 0111 11111223457777653 234
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLV-G-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 188 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 188 (499)
+..||+.++.....-.. .+.+ ..++.. + +.+|+.++. .+.+..||+.+.+-...- +.+....
T Consensus 55 v~~~d~~~~~~~~~~~~--~~~~---~~~~~~~~g~~l~~~~~~------~~~l~~~d~~~~~~~~~~-----~~~~~~~ 118 (300)
T TIGR03866 55 IQVIDLATGEVIGTLPS--GPDP---ELFALHPNGKILYIANED------DNLVTVIDIETRKVLAEI-----PVGVEPE 118 (300)
T ss_pred EEEEECCCCcEEEeccC--CCCc---cEEEECCCCCEEEEEcCC------CCeEEEEECCCCeEEeEe-----eCCCCcc
Confidence 88999988876442211 1111 122222 3 356665442 236899999875422111 1111123
Q ss_pred eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEEC
Q 010847 189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNM 268 (499)
Q Consensus 189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~ 268 (499)
+++...++.+++++.... +.++.||..+..-......+. +..+....-++..+++++..+ ..+.+||+
T Consensus 119 ~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~ 186 (300)
T TIGR03866 119 GMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVIDV 186 (300)
T ss_pred eEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEEc
Confidence 343444555666654321 346677876654322100011 111222222444444444222 25888998
Q ss_pred CCCce
Q 010847 269 TKLAW 273 (499)
Q Consensus 269 ~~~~W 273 (499)
.+...
T Consensus 187 ~~~~~ 191 (300)
T TIGR03866 187 ATRKV 191 (300)
T ss_pred Cccee
Confidence 87653
No 64
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.82 E-value=0.4 Score=44.04 Aligned_cols=179 Identities=18% Similarity=0.218 Sum_probs=102.5
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS 108 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~ 108 (499)
.+|+.. ....+++||+.+++ |+.-.. .+.....+..++.||+..+ .
T Consensus 38 ~v~~~~------~~~~l~~~d~~tG~~~W~~~~~-------------------~~~~~~~~~~~~~v~v~~~-------~ 85 (238)
T PF13360_consen 38 RVYVAS------GDGNLYALDAKTGKVLWRFDLP-------------------GPISGAPVVDGGRVYVGTS-------D 85 (238)
T ss_dssp EEEEEE------TTSEEEEEETTTSEEEEEEECS-------------------SCGGSGEEEETTEEEEEET-------T
T ss_pred EEEEEc------CCCEEEEEECCCCCEEEEeecc-------------------ccccceeeecccccccccc-------e
Confidence 666663 23479999998886 555432 1222225777899988763 2
Q ss_pred ceEEEEECCCC--cEEE-eecCCCCCCC-CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCC
Q 010847 109 MIVRFIDLETN--LCGV-METSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPP 182 (499)
Q Consensus 109 ~~~~~yd~~t~--~W~~-~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p 182 (499)
+.++.+|..++ .|+. ... ..+.+ ......+..++.+|+... ...++++|+.+++ |..... .|
T Consensus 86 ~~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~---~~ 153 (238)
T PF13360_consen 86 GSLYALDAKTGKVLWSIYLTS--SPPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVG---EP 153 (238)
T ss_dssp SEEEEEETTTSCEEEEEEE-S--SCTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESS---TT
T ss_pred eeeEecccCCcceeeeecccc--ccccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecC---CC
Confidence 25999998877 5884 432 12222 233344445777777643 3469999998875 665432 11
Q ss_pred CCCc-------cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeC
Q 010847 183 APRY-------DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGG 253 (499)
Q Consensus 183 ~~r~-------~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG 253 (499)
.... ..+...+.++.+|+..+.+ .+..+|..++. |+.. ... ........++.+|+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~~------~~~~~~~~~~~l~~~~- 219 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-ISG------IYSLPSVDGGTLYVTS- 219 (238)
T ss_dssp -SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-
T ss_pred CCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CCC------ccCCceeeCCEEEEEe-
Confidence 1111 1123334455788876643 26677999987 8543 111 1111334466777765
Q ss_pred CCCCCCcceEEEEECCCCc
Q 010847 254 GDNNNGCQETIVLNMTKLA 272 (499)
Q Consensus 254 ~~~~~~~~~~~~~d~~~~~ 272 (499)
. ...++.+|+.+++
T Consensus 220 ~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 220 S-----DGRLYALDLKTGK 233 (238)
T ss_dssp T-----TTEEEEEETTTTE
T ss_pred C-----CCEEEEEECCCCC
Confidence 2 1368999998875
No 65
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.80 E-value=0.044 Score=53.62 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=78.0
Q ss_pred ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCcc----CcEEE--
Q 010847 91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLL----NDVHF-- 164 (499)
Q Consensus 91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~----~~v~~-- 164 (499)
.+++|+..+.. . ...+||+.+..-...+ .++.+...-.++.++++||++.......... ..++.
T Consensus 75 ~gskIv~~d~~---~----~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~ 144 (342)
T PF07893_consen 75 HGSKIVAVDQS---G----RTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALV 144 (342)
T ss_pred cCCeEEEEcCC---C----CeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEec
Confidence 58999988654 1 2889999999877665 4555666667788899999998764332110 03333
Q ss_pred EE--------CCCCeeEEeeecCCCCCCCcc-------ceEEEEcCcEEEE-EcCCCCCCCCCcEEEEECCCCceEeccc
Q 010847 165 LD--------LETMTWDAVEVTQTPPAPRYD-------HSAALHANRYLIV-FGGCSHSIFFNDLHVLDLQTNEWSQPEI 228 (499)
Q Consensus 165 yd--------~~t~~W~~~~~~~~~p~~r~~-------~~~~~~~~~~l~v-~GG~~~~~~~~~i~~~d~~~~~W~~~~~ 228 (499)
|+ .....|..+++ +|..... .+-+++++.+|+| .-|.. .-.|.||..+.+|+.+
T Consensus 145 ~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~-- 214 (342)
T PF07893_consen 145 YRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKH-- 214 (342)
T ss_pred cccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeec--
Confidence 33 23346777653 2322222 1222334566776 33321 2389999999999997
Q ss_pred CCCCCCcCcc
Q 010847 229 KGDLVTGRAG 238 (499)
Q Consensus 229 ~~~~p~~r~~ 238 (499)
+++..|-.+
T Consensus 215 -GdW~LPF~G 223 (342)
T PF07893_consen 215 -GDWMLPFHG 223 (342)
T ss_pred -cceecCcCC
Confidence 666555444
No 66
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.54 E-value=0.021 Score=60.67 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=8.4
Q ss_pred EEEEcCCCceEEeee
Q 010847 48 QVFDLRSLAWSNLRL 62 (499)
Q Consensus 48 ~~yd~~t~~W~~~~~ 62 (499)
|+|--.+-+|+.++.
T Consensus 130 ~~~~e~~~~~~~~~~ 144 (697)
T PF09726_consen 130 FVYVEASVRLKDLKS 144 (697)
T ss_pred HHHHHHHHhhcccCC
Confidence 455555556666554
No 67
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.44 E-value=1.1 Score=44.52 Aligned_cols=170 Identities=17% Similarity=0.136 Sum_probs=91.1
Q ss_pred cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cE
Q 010847 46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LC 121 (499)
Q Consensus 46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W 121 (499)
.++.+|+.+++ |+.....+. ...+...+.+..++.+| +|.. ...++.+|+.++ .|
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~--------------~~~~~~~sp~~~~~~v~-~~~~------~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPA--------------LTLRGSASPVIADGGVL-VGFA------GGKLVALDLQTGQPLW 214 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCc--------------eeecCCCCCEEECCEEE-EECC------CCEEEEEEccCCCEee
Confidence 58999998875 765332110 00122234455566555 4432 124889998877 47
Q ss_pred EEeecCCCCCCC--------CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCccceEE
Q 010847 122 GVMETSGKVPVA--------RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAA 191 (499)
Q Consensus 122 ~~~~~~g~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~ 191 (499)
+... ..|.. ....+.+..++.+|+... ...+++||+.+++ |..-. + . ..+.+
T Consensus 215 ~~~~---~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-------~g~l~a~d~~tG~~~W~~~~-----~-~--~~~p~ 276 (377)
T TIGR03300 215 EQRV---ALPKGRTELERLVDVDGDPVVDGGQVYAVSY-------QGRVAALDLRSGRVLWKRDA-----S-S--YQGPA 276 (377)
T ss_pred eecc---ccCCCCCchhhhhccCCccEEECCEEEEEEc-------CCEEEEEECCCCcEEEeecc-----C-C--ccCce
Confidence 5432 11111 112233445778887543 2359999998764 75431 1 1 11222
Q ss_pred EEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847 192 LHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMT 269 (499)
Q Consensus 192 ~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~ 269 (499)
+.++++|+... ...++.+|..++. |+... +. .+...+.+..++.+|+.. .+ ..++.+|..
T Consensus 277 -~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~----~~-~~~~ssp~i~g~~l~~~~-~~-----G~l~~~d~~ 338 (377)
T TIGR03300 277 -VDDNRLYVTDA------DGVVVALDRRSGSELWKNDE----LK-YRQLTAPAVVGGYLVVGD-FE-----GYLHWLSRE 338 (377)
T ss_pred -EeCCEEEEECC------CCeEEEEECCCCcEEEcccc----cc-CCccccCEEECCEEEEEe-CC-----CEEEEEECC
Confidence 34666777643 2369999998764 76521 11 122223344577777642 11 258888987
Q ss_pred CCc
Q 010847 270 KLA 272 (499)
Q Consensus 270 ~~~ 272 (499)
+++
T Consensus 339 tG~ 341 (377)
T TIGR03300 339 DGS 341 (377)
T ss_pred CCC
Confidence 764
No 68
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.36 E-value=0.56 Score=45.92 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC----ceEEEE--EC--
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS----MIVRFI--DL-- 116 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d~-- 116 (499)
..+.+||..+..-...|.+.. +...-.++.++++||++.......... ..++.+ ++
T Consensus 86 ~~t~vyDt~t~av~~~P~l~~----------------pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~ 149 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATGPRLHS----------------PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPP 149 (342)
T ss_pred CCeEEEECCCCeEeccCCCCC----------------CCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccc
Confidence 348999999998887776542 333346677799999998765442210 044444 31
Q ss_pred ------CCCcEEEeecCCCCCCCCcc-------eEEEEE-CCEEEE-EcCcCCCCCccCcEEEEECCCCeeEEee
Q 010847 117 ------ETNLCGVMETSGKVPVARGG-------HSVTLV-GSRLII-FGGEDRSRKLLNDVHFLDLETMTWDAVE 176 (499)
Q Consensus 117 ------~t~~W~~~~~~g~~p~~r~~-------~~~~~~-~~~lyv-~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 176 (499)
..-.|..++ ++|..... .+.+++ +..||| .-|.. ...|+||+.+.+|+.+.
T Consensus 150 ~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 150 DDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeecc
Confidence 122577775 44433222 223334 568888 33321 24899999999999884
No 69
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.27 E-value=1.8 Score=45.13 Aligned_cols=123 Identities=13% Similarity=0.022 Sum_probs=65.7
Q ss_pred eEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cEEEeecCC--CCC---CCCcceEEEEECCEEEEEcCcCCCCCcc
Q 010847 87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LCGVMETSG--KVP---VARGGHSVTLVGSRLIIFGGEDRSRKLL 159 (499)
Q Consensus 87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W~~~~~~g--~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~~ 159 (499)
+.++.++.||+.... ..++.+|..|+ .|+.-.... ..+ ........+..+++||+... .
T Consensus 64 tPvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------d 129 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------D 129 (527)
T ss_pred CCEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------C
Confidence 345678999986542 23899998886 476543110 001 00112234556778776322 2
Q ss_pred CcEEEEECCCCe--eEEeeecCCCCCCC-ccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc--eEec
Q 010847 160 NDVHFLDLETMT--WDAVEVTQTPPAPR-YDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQP 226 (499)
Q Consensus 160 ~~v~~yd~~t~~--W~~~~~~~~~p~~r-~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~ 226 (499)
..++++|..|++ |+.-.. ...... ...+.++. ++.+|+-...........++.||.++++ |+.-
T Consensus 130 g~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEECCCCCEEeecccc--cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 359999998875 764321 111111 11222334 5545553222222234579999998876 8764
No 70
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.27 E-value=1.5 Score=44.19 Aligned_cols=148 Identities=12% Similarity=0.040 Sum_probs=79.5
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.++.-..+..... .....+...-++.|++.....+ ...++.+|+.++....+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~----------------~~~~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPG----------------MNGAPAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRL 273 (417)
T ss_pred cEEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEEC
Confidence 468999999887665543211 1111222222455666543222 23599999999887776
Q ss_pred ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcC
Q 010847 125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 203 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 203 (499)
... +...... ....++ +|++...... ...+|.+|+.+..+..+...+ ..........++..+++..
T Consensus 274 ~~~---~~~~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 274 TNG---PGIDTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCC---CCCCCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEE
Confidence 521 1111111 111233 5555433221 347999999988887775322 2222233333444555554
Q ss_pred CCCCCCCCcEEEEECCCCceEecc
Q 010847 204 CSHSIFFNDLHVLDLQTNEWSQPE 227 (499)
Q Consensus 204 ~~~~~~~~~i~~~d~~~~~W~~~~ 227 (499)
... ....++.+|+.+..+..+.
T Consensus 341 ~~~--~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 341 REG--GGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred ccC--CceEEEEEeCCCCCeEEcc
Confidence 332 2347999999887776653
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.14 E-value=0.11 Score=52.75 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=20.7
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847 405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 453 (499)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 453 (499)
.+|+.+.+.+....+....+...+..++...+.++.+|+..+..++++.
T Consensus 188 e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 188 EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444444555555555544444443
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.10 E-value=0.75 Score=45.34 Aligned_cols=175 Identities=23% Similarity=0.327 Sum_probs=93.5
Q ss_pred EEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECC
Q 010847 89 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLE 168 (499)
Q Consensus 89 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~ 168 (499)
...++.+++.|+.+. .+..+|..+.. ......|....-|++ ++...++.|++-||+++ .|-.||+.
T Consensus 119 ~~~d~t~l~s~sDd~------v~k~~d~s~a~-v~~~l~~htDYVR~g-~~~~~~~hivvtGsYDg------~vrl~DtR 184 (487)
T KOG0310|consen 119 SPQDNTMLVSGSDDK------VVKYWDLSTAY-VQAELSGHTDYVRCG-DISPANDHIVVTGSYDG------KVRLWDTR 184 (487)
T ss_pred cccCCeEEEecCCCc------eEEEEEcCCcE-EEEEecCCcceeEee-ccccCCCeEEEecCCCc------eEEEEEec
Confidence 456899999987532 24555666555 344444444444443 33445789999999876 36677776
Q ss_pred CC-eeEEeeecCCCCCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCccc-----EE
Q 010847 169 TM-TWDAVEVTQTPPAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGH-----AG 241 (499)
Q Consensus 169 t~-~W~~~~~~~~~p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~-----~~ 241 (499)
+. .|..--. ...|.. .++.+.+ ..|...|| |.+-++|+.++ +.++..+..| ++
T Consensus 185 ~~~~~v~eln-hg~pVe----~vl~lpsgs~iasAgG-------n~vkVWDl~~G--------~qll~~~~~H~KtVTcL 244 (487)
T KOG0310|consen 185 SLTSRVVELN-HGCPVE----SVLALPSGSLIASAGG-------NSVKVWDLTTG--------GQLLTSMFNHNKTVTCL 244 (487)
T ss_pred cCCceeEEec-CCCcee----eEEEcCCCCEEEEcCC-------CeEEEEEecCC--------ceehhhhhcccceEEEE
Confidence 55 4432211 122222 2334444 55555566 56777777543 3333344433 12
Q ss_pred EEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCC
Q 010847 242 ITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNG 311 (499)
Q Consensus 242 ~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~ 311 (499)
... ++.-++.||.+.+ +-+|| +..|+.+..+..+.| -+...+.++ +.-+++|+.++
T Consensus 245 ~l~s~~~rLlS~sLD~~-----VKVfd--~t~~Kvv~s~~~~~p------vLsiavs~d-d~t~viGmsnG 301 (487)
T KOG0310|consen 245 RLASDSTRLLSGSLDRH-----VKVFD--TTNYKVVHSWKYPGP------VLSIAVSPD-DQTVVIGMSNG 301 (487)
T ss_pred EeecCCceEeecccccc-----eEEEE--ccceEEEEeeecccc------eeeEEecCC-CceEEEecccc
Confidence 222 3466777776543 67888 445666655432222 122223333 34566688776
No 73
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.95 E-value=1.9 Score=42.41 Aligned_cols=277 Identities=15% Similarity=0.144 Sum_probs=131.8
Q ss_pred CccccCCCCCeEEcccCCCCCCccc-------ceEEEEcCCCCCcccCcEEE--EEcCCCceEEeeeCcccccCccccCC
Q 010847 5 SWHLELPYDLWVTLPVSGARPSPRY-------KKLYIVGGSRNGRFLSDVQV--FDLRSLAWSNLRLETELDADKTEDSG 75 (499)
Q Consensus 5 ~~~~~~~~~~W~~~~~~~~~p~~r~-------~~l~~~GG~~~~~~~~~~~~--yd~~t~~W~~~~~~~~~~~~~~~~~~ 75 (499)
.|.||...+++..+......+.|.+ ..||+..... .....+.. ++..+++...+.....
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L~~~~~~~~---------- 84 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTLTLLNSVPS---------- 84 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEEEEEEEEEE----------
T ss_pred EEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCcceeEEeeeecc----------
Confidence 4667888888887664222222222 2788886643 11223444 4555578888766431
Q ss_pred CCCCCCCccceeEEE--ECCEEEEEcccCCCCCCCceEEEEECCCC-cEEEee----c--CCCCC---CCCcceEEEEE-
Q 010847 76 LLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSDSMIVRFIDLETN-LCGVME----T--SGKVP---VARGGHSVTLV- 142 (499)
Q Consensus 76 ~~~~p~~r~~~s~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~t~-~W~~~~----~--~g~~p---~~r~~~~~~~~- 142 (499)
.+...+.++. -+..||+.- +. ...+.+|++... .-.... . .|+.| ..-.-|.+...
T Consensus 85 -----~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 85 -----GGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp -----SSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T
T ss_pred -----CCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC
Confidence 1222222222 245566542 21 234778877763 322221 0 11211 22333555444
Q ss_pred -CCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEEC
Q 010847 143 -GSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDL 218 (499)
Q Consensus 143 -~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~ 218 (499)
++.+|+.- . -.+.|++|+..... ....... ..|.+-.=..++.. +++++|+....+ +.|..|+.
T Consensus 154 dg~~v~v~d-l-----G~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~ 221 (345)
T PF10282_consen 154 DGRFVYVPD-L-----GADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDY 221 (345)
T ss_dssp TSSEEEEEE-T-----TTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEE
T ss_pred CCCEEEEEe-c-----CCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEee
Confidence 34677652 1 14678998887655 5443322 12222111123333 356899987543 56777766
Q ss_pred C--CCceEecccCCCCCC---cC-cccEEEEE--CCEEEEEeCCCCCCCcceEEEEEC--CCCceEEeccCCCCCCCCCC
Q 010847 219 Q--TNEWSQPEIKGDLVT---GR-AGHAGITI--DENWYIVGGGDNNNGCQETIVLNM--TKLAWSILTSVKGRNPLASE 288 (499)
Q Consensus 219 ~--~~~W~~~~~~~~~p~---~r-~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~--~~~~W~~l~~~~~~~p~~~~ 288 (499)
. ++.++.+......|. .. ..+.+++. +..+||.-.. .+.+.+|++ .++..+.+...+....
T Consensus 222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~---- 292 (345)
T PF10282_consen 222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGK---- 292 (345)
T ss_dssp ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSS----
T ss_pred cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCC----
Confidence 5 666666543232322 22 22233333 3467776432 345667766 5556665544332110
Q ss_pred CCceEEEEEcCceEEEEEcCCCCCCCceEEEEE--CCCCCCCCC
Q 010847 289 GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMR--LKPRDIPRP 330 (499)
Q Consensus 289 ~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~--~~~~~W~~~ 330 (499)
+-..+.+..+..+|+|.+...+ .+.+|+ ..+..+...
T Consensus 293 -~Pr~~~~s~~g~~l~Va~~~s~----~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 293 -FPRHFAFSPDGRYLYVANQDSN----TVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp -SEEEEEE-TTSSEEEEEETTTT----EEEEEEEETTTTEEEEE
T ss_pred -CccEEEEeCCCCEEEEEecCCC----eEEEEEEeCCCCcEEEe
Confidence 0122233344567777654433 555554 455555443
No 74
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.95 E-value=0.17 Score=45.87 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=27.1
Q ss_pred HhhhHHHHHhhhhhHHHHHHhhccchHHHH---------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 394 ELSLTEVRTENSRFREKIDEVNSTHSELSK---------ELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
+..+...+.+..+++.++++.+.++...+. ++..+..+.+.++++...++.++.++..++..+
T Consensus 51 ~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 51 EIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444443333322 223334444444555555555554444443333
No 75
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.94 E-value=0.16 Score=51.03 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccccc--CCCceee
Q 010847 458 TIENEVQILRQQKSAFEQEMERATSVQTQ--GSGGVWR 493 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~~~~~q~q--~~~~~~~ 493 (499)
.|.+++..+.+.-.++.++-..+..+.+- +.+|.||
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WG 206 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWG 206 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchH
Confidence 34455555554444555555555555543 5789997
No 76
>smart00284 OLF Olfactomedin-like domains.
Probab=95.94 E-value=1.4 Score=40.75 Aligned_cols=159 Identities=14% Similarity=0.024 Sum_probs=85.1
Q ss_pred CCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEee---cC---CCCCCCCcc---eEEEEECCEEEEEc
Q 010847 80 LPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVME---TS---GKVPVARGG---HSVTLVGSRLIIFG 150 (499)
Q Consensus 80 p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~---~~---g~~p~~r~~---~~~~~~~~~lyv~G 150 (499)
|.+-.|...++++|.+|+--.. ...+..||+.+++-.... .. ...|....+ .-+++.++-|+++=
T Consensus 71 p~~~~GtG~VVYngslYY~~~~------s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIY 144 (255)
T smart00284 71 PHAGQGTGVVVYNGSLYFNKFN------SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIY 144 (255)
T ss_pred CCccccccEEEECceEEEEecC------CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEE
Confidence 3457788889999999985432 345999999999765333 11 112221112 22344456676663
Q ss_pred CcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCC
Q 010847 151 GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKG 230 (499)
Q Consensus 151 G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~ 230 (499)
....+.. .=.+..+|+.+..-...-.+ ..|.+..+-+.+++ +- ||++-.. ......-.+.||+.+++=..+. -
T Consensus 145 at~~~~g-~ivvSkLnp~tL~ve~tW~T-~~~k~sa~naFmvC-Gv-LY~~~s~-~~~~~~I~yayDt~t~~~~~~~--i 217 (255)
T smart00284 145 ATEQNAG-KIVISKLNPATLTIENTWIT-TYNKRSASNAFMIC-GI-LYVTRSL-GSKGEKVFYAYDTNTGKEGHLD--I 217 (255)
T ss_pred eccCCCC-CEEEEeeCcccceEEEEEEc-CCCcccccccEEEe-eE-EEEEccC-CCCCcEEEEEEECCCCccceee--e
Confidence 3222211 22356778877543332222 23444444444433 54 8887431 1122234689999887644432 2
Q ss_pred CCCCcCcccEEEEEC---CEEEEE
Q 010847 231 DLVTGRAGHAGITID---ENWYIV 251 (499)
Q Consensus 231 ~~p~~r~~~~~~~~~---~~l~v~ 251 (499)
+++.+...+++...+ .+||+.
T Consensus 218 ~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 218 PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeccccccceeceeCCCCCeEEEE
Confidence 444444555666553 467776
No 77
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.93 E-value=2 Score=43.82 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=79.9
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.++.-..+..... .-...+....++.|++.....+ ...++.+|+.++....+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g----------------~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~l 301 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPG----------------INGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRI 301 (448)
T ss_pred cEEEEEECCCCCeEEecCCCC----------------CcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEEC
Confidence 479999999887665543211 0111222223456666543322 34699999999988777
Q ss_pred ecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847 125 ETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG 202 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G 202 (499)
.. ... ........-+ ..|++...... ...+|.+|+.++++..+...+. ........ +++.|++.+
T Consensus 302 t~---~~~-~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 302 TR---HRA-IDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVN 368 (448)
T ss_pred cc---CCC-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEE
Confidence 52 111 1111112223 35555432221 3579999999999888753221 11122222 344444443
Q ss_pred CCCCCCCCCcEEEEECCCCceEecc
Q 010847 203 GCSHSIFFNDLHVLDLQTNEWSQPE 227 (499)
Q Consensus 203 G~~~~~~~~~i~~~d~~~~~W~~~~ 227 (499)
... ....++.+|+.++....+.
T Consensus 369 -~~~--g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 369 -RTN--GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred -ecC--CceEEEEEECCCCCeEEcc
Confidence 322 1346899999998877764
No 78
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.86 E-value=0.1 Score=52.90 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcccccCCCcee
Q 010847 459 IENEVQILRQQKSAFEQEMERATSVQTQGSGGVW 492 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~ 492 (499)
.++|.++++.+++.+.+..++++++.....+.-|
T Consensus 429 ~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~ 462 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW 462 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4566666666666666666666666655555555
No 79
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.84 E-value=2.4 Score=42.83 Aligned_cols=193 Identities=9% Similarity=0.011 Sum_probs=104.1
Q ss_pred cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccc-eeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSD-HCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
+++++|+.++.=+.+.... .... .....-+.+|++.-...+ ..++|.+|+.++.++++
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~-----------------g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~L 272 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQ-----------------GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQI 272 (419)
T ss_pred EEEEEECCCCcEEEEecCC-----------------CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEc
Confidence 8999999988766665421 1111 112222446665543322 35699999999999888
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCC
Q 010847 125 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGC 204 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~ 204 (499)
. ..+..-......-.+.+|++.-... -..+++.+|+.++....+...+. ... ...-+++.|++....
T Consensus 273 T---~~~~~d~~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 273 T---NYPGIDVNGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRE 339 (419)
T ss_pred c---cCCCccCccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcC
Confidence 6 2222111111111244676654332 13579999999998877754321 222 222234444444432
Q ss_pred CCCC---CCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccC
Q 010847 205 SHSI---FFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSV 279 (499)
Q Consensus 205 ~~~~---~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~ 279 (499)
.... ...+++++|+.++.++.+...+ ...+-...-+++.+++-... .....++.+++..+.=..++..
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~~~ 410 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIRRLTANG-----VNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFPLK 410 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeEECCCCC-----CcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEeecC
Confidence 2111 2358999999999998875421 12112222244444443222 2345688888877655555443
No 80
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.84 E-value=0.32 Score=41.41 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=52.5
Q ss_pred HHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhH
Q 010847 392 VLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQK 470 (499)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~ 470 (499)
.+...+.....+...+...++.++.++++.++++...+.....++.+...++..++....+++.+. .++....++..++
T Consensus 56 ~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~ 135 (151)
T PF11559_consen 56 DLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHEL 135 (151)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666666666666666666666666665555556666666666655555555555 3444444555555
Q ss_pred HHHHHHHHHhhcc
Q 010847 471 SAFEQEMERATSV 483 (499)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (499)
...+.|.+.+.++
T Consensus 136 rkke~E~~kLk~r 148 (151)
T PF11559_consen 136 RKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHH
Confidence 5556665555443
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.80 E-value=0.084 Score=50.73 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847 458 TIENEVQILRQQKSAFEQEMERAT 481 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~~~ 481 (499)
.++++.+.+..|.+...+++++++
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 82
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.76 E-value=0.46 Score=46.49 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=84.2
Q ss_pred CEEEEEcccCCCCCCCceEEEEECCCCcEEEeec--CCCCCCCCcceEEEEECCE-EEEEcCcCCCCCccCcEEEEECCC
Q 010847 93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMET--SGKVPVARGGHSVTLVGSR-LIIFGGEDRSRKLLNDVHFLDLET 169 (499)
Q Consensus 93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~--~g~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~v~~yd~~t 169 (499)
--|.+.+|.+..- .++..|-.++. .+.. ....| ..... ..-+|. ..+++|. ..-+|+||+.+
T Consensus 225 ~plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fP--i~~a~-f~p~G~~~i~~s~r------rky~ysyDle~ 289 (514)
T KOG2055|consen 225 APLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFP--IQKAE-FAPNGHSVIFTSGR------RKYLYSYDLET 289 (514)
T ss_pred CceEEEecCCCcE----EEEEecCccCh--hheeeeeccCc--cceee-ecCCCceEEEeccc------ceEEEEeeccc
Confidence 4688888887643 37777776665 2221 01222 22212 222444 6666664 33589999999
Q ss_pred CeeEEeeecCCCCCCCccceE-EEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEE
Q 010847 170 MTWDAVEVTQTPPAPRYDHSA-ALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENW 248 (499)
Q Consensus 170 ~~W~~~~~~~~~p~~r~~~~~-~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l 248 (499)
.+-.++.+...++ .+.-+.. +...++ ++++-|..+ -|+.+...|+.|..- -.++.....++....+..|
T Consensus 290 ak~~k~~~~~g~e-~~~~e~FeVShd~~-fia~~G~~G-----~I~lLhakT~eli~s---~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 290 AKVTKLKPPYGVE-EKSMERFEVSHDSN-FIAIAGNNG-----HIHLLHAKTKELITS---FKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred cccccccCCCCcc-cchhheeEecCCCC-eEEEcccCc-----eEEeehhhhhhhhhe---eeeccEEeeEEEecCCcEE
Confidence 9999988765444 2222222 334355 555555432 477777778877541 1122222333333334567
Q ss_pred EEEeCCCCCCCcceEEEEECCCCc
Q 010847 249 YIVGGGDNNNGCQETIVLNMTKLA 272 (499)
Q Consensus 249 ~v~GG~~~~~~~~~~~~~d~~~~~ 272 (499)
+++||.. .+|++|+..+.
T Consensus 360 ~~~~~~G------eV~v~nl~~~~ 377 (514)
T KOG2055|consen 360 LASGGTG------EVYVWNLRQNS 377 (514)
T ss_pred EEEcCCc------eEEEEecCCcc
Confidence 7777632 69999998874
No 83
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.59 E-value=1.9 Score=39.90 Aligned_cols=189 Identities=16% Similarity=0.101 Sum_probs=100.2
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE--CCEEEEEcccCCCCCCCceEEEEECCCCcEE
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW--GTKLLILGGHYKKSSDSMIVRFIDLETNLCG 122 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~ 122 (499)
..++.+|+.++.-...... . ..+++.. ++.+|+.... .+.++|+.++.++
T Consensus 22 ~~i~~~~~~~~~~~~~~~~------------------~--~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLP------------------G--PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVT 73 (246)
T ss_dssp TEEEEEETTTTEEEEEESS------------------S--EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEE
T ss_pred CEEEEEECCCCeEEEEecC------------------C--CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEE
Confidence 4689999999877665432 2 2333333 6888887642 2667799999998
Q ss_pred EeecC--CCCCCCCcceEEEEECCEEEEEc--CcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcE
Q 010847 123 VMETS--GKVPVARGGHSVTLVGSRLIIFG--GEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRY 197 (499)
Q Consensus 123 ~~~~~--g~~p~~r~~~~~~~~~~~lyv~G--G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~ 197 (499)
.+... +..+..+.+-.++.-++.||+-- ...........++++++. .+...+... + .. -..++... ++.
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~--~~-pNGi~~s~dg~~ 147 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--L--GF-PNGIAFSPDGKT 147 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--E--SS-EEEEEEETTSSE
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--c--cc-ccceEECCcchh
Confidence 88743 11233444444444567877742 111111011569999998 666655431 1 11 12333333 445
Q ss_pred EEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCccc-EEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCce
Q 010847 198 LIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGH-AGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAW 273 (499)
Q Consensus 198 l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W 273 (499)
||+.- ...+.|++|++.... +.....-...+...... .+++- +++|||..- ....+++||+....-
T Consensus 148 lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~ 217 (246)
T PF08450_consen 148 LYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLL 217 (246)
T ss_dssp EEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEE
T ss_pred eeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEE
Confidence 66632 234569999986433 43322111112221112 33333 567888732 123799999995555
Q ss_pred EEec
Q 010847 274 SILT 277 (499)
Q Consensus 274 ~~l~ 277 (499)
..+.
T Consensus 218 ~~i~ 221 (246)
T PF08450_consen 218 REIE 221 (246)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 5554
No 84
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.58 E-value=0.26 Score=48.01 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=4.1
Q ss_pred eEEEEECCC
Q 010847 262 ETIVLNMTK 270 (499)
Q Consensus 262 ~~~~~d~~~ 270 (499)
.+|.+++.|
T Consensus 268 H~yalel~t 276 (493)
T KOG0804|consen 268 HCYALELET 276 (493)
T ss_pred ceEEEeecc
Confidence 344444443
No 85
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.58 E-value=3.1 Score=42.22 Aligned_cols=191 Identities=10% Similarity=0.029 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.+++-..+..... .-...+...-+++|++.....+ ...++++|+.++....+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g----------------~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG----------------LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRV 282 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC----------------CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEc
Confidence 469999999988776643221 0001111122445654432222 24699999999988777
Q ss_pred ecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEE-EcCcEEEEEcC
Q 010847 125 ETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAAL-HANRYLIVFGG 203 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~-~~~~~l~v~GG 203 (499)
. ..+...........+..|++..... ....+|.+|+.++++..+...+ ........ -+++.|++...
T Consensus 283 t---~~~~~~~~~~~spDg~~i~f~s~~~----g~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 283 T---NHPAIDTEPFWGKDGRTLYFTSDRG----GKPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred c---cCCCCcCCeEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEc
Confidence 5 2221111111111234565543222 1347999999998888775321 11111222 23454555443
Q ss_pred CCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847 204 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 277 (499)
Q Consensus 204 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~ 277 (499)
..+ ...++.+|+.++..+.+.... .. ... ...-+++.+++..... ....++..+.....=..++
T Consensus 351 ~~~---~~~l~~~dl~tg~~~~lt~~~---~~-~~p-~~spdg~~i~~~~~~~--g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 351 QDG---NFHVAAQDLQRGSVRILTDTS---LD-ESP-SVAPNGTMLIYATRQQ--GRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred cCC---ceEEEEEECCCCCEEEccCCC---CC-CCc-eECCCCCEEEEEEecC--CceEEEEEECCCCceEECc
Confidence 221 236999999998887764311 11 111 2222555555543222 2345777777544333343
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.13 Score=52.14 Aligned_cols=79 Identities=14% Similarity=0.300 Sum_probs=40.1
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhHHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIA-------ELQKMLESSQTIENEVQILRQQKSAFEQ 475 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------e~~~~l~~~~~~~~e~~~~~~~~~~~~~ 475 (499)
+...++..++.++.++++++.++++++.++++++.++..+..++. |++.....+..|++++++.....++|+.
T Consensus 423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~ 502 (652)
T COG2433 423 RIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555544443 2333333334555555555555556666
Q ss_pred HHHHhh
Q 010847 476 EMERAT 481 (499)
Q Consensus 476 ~~~~~~ 481 (499)
.+++++
T Consensus 503 ~l~~l~ 508 (652)
T COG2433 503 KLAELR 508 (652)
T ss_pred HHHHHH
Confidence 655444
No 87
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.52 E-value=3.6 Score=42.58 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEEC-CEEEEEcccCCCCCCCceEEEEECCCCc-
Q 010847 45 SDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWG-TKLLILGGHYKKSSDSMIVRFIDLETNL- 120 (499)
Q Consensus 45 ~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~t~~- 120 (499)
..++.+|+.+++ |+.-...... . +.++ .....++..+ +.||+... ...++.+|..|++
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~-----~----~~~~--~~~~g~~~~~~~~V~v~~~-------~g~v~AlD~~TG~~ 132 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPAD-----R----GCCD--VVNRGVAYWDPRKVFFGTF-------DGRLVALDAETGKQ 132 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCcc-----c----cccc--cccCCcEEccCCeEEEecC-------CCeEEEEECCCCCE
Confidence 468999998875 8774432100 0 0001 1112234445 77886432 2349999998774
Q ss_pred -EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCC---CccCcEEEEECCCC--eeEEee
Q 010847 121 -CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSR---KLLNDVHFLDLETM--TWDAVE 176 (499)
Q Consensus 121 -W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~---~~~~~v~~yd~~t~--~W~~~~ 176 (499)
|+.-......+......+.++.++.+|+ |..+... .....+++||..|+ .|+.-.
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 7654311000000012233445555554 4322211 12457999999876 486543
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.52 E-value=0.24 Score=44.99 Aligned_cols=50 Identities=14% Similarity=0.293 Sum_probs=23.2
Q ss_pred hhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010847 395 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA 444 (499)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (499)
..+.+.+.+...+...+...+..+++.+.+....+.+++..+++..+.+.
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555444444444444444444444433
No 89
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.48 E-value=0.44 Score=42.54 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=15.3
Q ss_pred hhHHHHHhhhhhHHHHHHhhccchHHHHHHHH
Q 010847 396 SLTEVRTENSRFREKIDEVNSTHSELSKELSS 427 (499)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 427 (499)
.+.+...+..+|.+-+...+.+.+++++++..
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555554444443
No 90
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.44 E-value=0.39 Score=42.67 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 450 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 450 (499)
....+...+...+.......+.++..+..++..++...++..+..+++
T Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 103 RIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444444444444444444444
No 91
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.41 E-value=1.6 Score=38.80 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=77.4
Q ss_pred eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCC---CCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcE
Q 010847 87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGK---VPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDV 162 (499)
Q Consensus 87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~---~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v 162 (499)
+++...+++|+|-|. .+|+++.............. +|. ....+..... +++|+|-|. ..
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~-~IDAa~~~~~~~~~yfFkg~--------~y 73 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS-PVDAAFERPDTGKIYFFKGD--------KY 73 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC-CccEEEEECCCCEEEEECCC--------EE
Confidence 344556999999773 27888765222222111111 221 2222222223 789999653 47
Q ss_pred EEEECCCCeeEEeeec---CCCCCCCccceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEec--c-cCCCCC-C
Q 010847 163 HFLDLETMTWDAVEVT---QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP--E-IKGDLV-T 234 (499)
Q Consensus 163 ~~yd~~t~~W~~~~~~---~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~--~-~~~~~p-~ 234 (499)
|.|+..+..+..+..+ +-++.+..--++.... ++.+|+|.| +..|+||..+++...- . +...++ .
T Consensus 74 w~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~ 146 (194)
T cd00094 74 WVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGV 146 (194)
T ss_pred EEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCc
Confidence 7777654222111111 1111111112233333 678999988 4689998766554210 0 001111 1
Q ss_pred cCcccEEEEEC-CEEEEEeCCCCCCCcceEEEEECCCCc
Q 010847 235 GRAGHAGITID-ENWYIVGGGDNNNGCQETIVLNMTKLA 272 (499)
Q Consensus 235 ~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~d~~~~~ 272 (499)
+..-.++.... +.+|+|-|. ..|+||..+..
T Consensus 147 p~~idaa~~~~~~~~yfF~g~-------~y~~~d~~~~~ 178 (194)
T cd00094 147 PDKVDAAFRWLDGYYYFFKGD-------QYWRFDPRSKE 178 (194)
T ss_pred CCCcceeEEeCCCcEEEEECC-------EEEEEeCccce
Confidence 21122333344 789999773 68999987765
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.40 E-value=1.8 Score=40.09 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=93.3
Q ss_pred ECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847 91 WGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM 170 (499)
Q Consensus 91 ~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 170 (499)
.++.||.--|..+. +.+..||+.|++-.... .+|...++=.++.++++||..-=. .+..++||..+.
T Consensus 54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~tl 120 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK------EGTGFVYDPNTL 120 (264)
T ss_dssp ETTEEEEEECSTTE----EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS------SSEEEEEETTTT
T ss_pred CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec------CCeEEEEccccc
Confidence 57889988887664 45999999999876655 688888888999999999998442 456899999875
Q ss_pred eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEe-cccC-CCCCCcCcccEEEEECCEE
Q 010847 171 TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQ-PEIK-GDLVTGRAGHAGITIDENW 248 (499)
Q Consensus 171 ~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~-~~~~-~~~p~~r~~~~~~~~~~~l 248 (499)
+ .+.. .+.+..+-.++.. ++.+++--| ++.++.+|+.+.+-.. +.+. ...|.. .---+-.+++.+
T Consensus 121 ~--~~~~---~~y~~EGWGLt~d-g~~Li~SDG------S~~L~~~dP~~f~~~~~i~V~~~g~pv~-~LNELE~i~G~I 187 (264)
T PF05096_consen 121 K--KIGT---FPYPGEGWGLTSD-GKRLIMSDG------SSRLYFLDPETFKEVRTIQVTDNGRPVS-NLNELEYINGKI 187 (264)
T ss_dssp E--EEEE---EE-SSS--EEEEC-SSCEEEE-S------SSEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEE
T ss_pred e--EEEE---EecCCcceEEEcC-CCEEEEECC------ccceEEECCcccceEEEEEEEECCEECC-CcEeEEEEcCEE
Confidence 3 3332 2334567777754 555888777 3589999998754322 2221 111211 112334445555
Q ss_pred EEEeCCCCCCCcceEEEEECCCCceEEe
Q 010847 249 YIVGGGDNNNGCQETIVLNMTKLAWSIL 276 (499)
Q Consensus 249 ~v~GG~~~~~~~~~~~~~d~~~~~W~~l 276 (499)
|.= --..+.+.+.|+.++.-...
T Consensus 188 yAN-----VW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 188 YAN-----VWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EEE-----ETTSSEEEEEETTT-BEEEE
T ss_pred EEE-----eCCCCeEEEEeCCCCeEEEE
Confidence 532 12245788999999875543
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.11 Score=52.54 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=15.8
Q ss_pred hhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847 396 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 431 (499)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 431 (499)
..+..+.++..|+.++++++..+++++.++.+.+.+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~ 465 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRRE 465 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444433
No 94
>PRK05137 tolB translocation protein TolB; Provisional
Probab=95.33 E-value=3.8 Score=41.68 Aligned_cols=193 Identities=7% Similarity=-0.043 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.++....+..... .....+....+..|++.....+ ..++|.+|+.++....+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g----------------~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~L 285 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPG----------------MTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRL 285 (435)
T ss_pred CEEEEEECCCCcEEEeecCCC----------------cccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEc
Confidence 579999999998877654321 1112222233455655443222 34599999999887766
Q ss_pred ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcC
Q 010847 125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGG 203 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG 203 (499)
. ..+.... .....-++ +|++..... ....+|.+|+.+.....+... ..........-+++.|++..
T Consensus 286 t---~~~~~~~-~~~~spDG~~i~f~s~~~----g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~- 352 (435)
T PRK05137 286 T---DSPAIDT-SPSYSPDGSQIVFESDRS----GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTK- 352 (435)
T ss_pred c---CCCCccC-ceeEcCCCCEEEEEECCC----CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEE-
Confidence 4 2221111 11222234 454432111 135799999988777766531 11111111122344444433
Q ss_pred CCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC-CcceEEEEECCCCceEEec
Q 010847 204 CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLNMTKLAWSILT 277 (499)
Q Consensus 204 ~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d~~~~~W~~l~ 277 (499)
.... ...++.+|+.+.....+.... ....-...-+++.+++....... ....+|++|+....-..++
T Consensus 353 ~~~~--~~~i~~~d~~~~~~~~lt~~~-----~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 353 QGGG--QFSIGVMKPDGSGERILTSGF-----LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred cCCC--ceEEEEEECCCCceEeccCCC-----CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 2111 247899998776665543211 11111122244444443322211 1247899999877666654
No 95
>PTZ00421 coronin; Provisional
Probab=95.27 E-value=4.3 Score=41.92 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=35.0
Q ss_pred CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847 93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVT-LVGSRLIIFGGEDRSRKLLNDVHFLDLETMT 171 (499)
Q Consensus 93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 171 (499)
+.+++.||.+ ..+.++|+.++.-...- . ..... -.++. ..++.+++.|+.+ ..+.+||+.+.+
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l-~-~h~~~--V~sla~spdG~lLatgs~D------g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVI-K-CHSDQ--ITSLEWNLDGSLLCTTSKD------KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEE-c-CCCCc--eEEEEEECCCCEEEEecCC------CEEEEEECCCCc
Confidence 4577777753 34888998877532221 0 11111 11222 2256777777754 358899998765
No 96
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.17 E-value=0.24 Score=44.28 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHh
Q 010847 459 IENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
+.-+-+.+.++..++++|++++
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555554443
No 97
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.12 E-value=2.8 Score=41.49 Aligned_cols=188 Identities=11% Similarity=0.116 Sum_probs=99.7
Q ss_pred CceEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCC
Q 010847 108 SMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL--VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPR 185 (499)
Q Consensus 108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r 185 (499)
..++++++...++-+++.-.| |...-++- -++.|.|.--.-..-.....+|..+....+...+ +.
T Consensus 106 taDly~v~~e~Ge~kRiTyfG-----r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--------nl 172 (668)
T COG4946 106 TADLYVVPSEDGEAKRITYFG-----RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL--------NL 172 (668)
T ss_pred cccEEEEeCCCCcEEEEEEec-----cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeec--------cC
Confidence 456999999999998887554 22222222 2566666543321111122334343333333222 22
Q ss_pred ccceEEEEcCcEEEEEcCCC---------CCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCC
Q 010847 186 YDHSAALHANRYLIVFGGCS---------HSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDN 256 (499)
Q Consensus 186 ~~~~~~~~~~~~l~v~GG~~---------~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 256 (499)
.-.+..++.|+ +.++|-.. .+..-..+|+-.....+++++- +++...+ +-+++++++|.+.-.+
T Consensus 173 Gpathiv~~dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~v---dl~~~vS--~PmIV~~RvYFlsD~e- 245 (668)
T COG4946 173 GPATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFV---DLDGNVS--SPMIVGERVYFLSDHE- 245 (668)
T ss_pred CceeeEEEeCC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeee---ecCCCcC--CceEEcceEEEEeccc-
Confidence 22344456677 66666422 1122345666555555566542 2222211 2356688999885433
Q ss_pred CCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCCCCcc
Q 010847 257 NNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKI 332 (499)
Q Consensus 257 ~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~~~~~ 332 (499)
+.-.+|.-|+..+--.+-.++...-| | + +..+++..++-.|| ++|.||+.+..-++..+
T Consensus 246 --G~GnlYSvdldGkDlrrHTnFtdYY~--R--~----~nsDGkrIvFq~~G-------dIylydP~td~lekldI 304 (668)
T COG4946 246 --GVGNLYSVDLDGKDLRRHTNFTDYYP--R--N----ANSDGKRIVFQNAG-------DIYLYDPETDSLEKLDI 304 (668)
T ss_pred --CccceEEeccCCchhhhcCCchhccc--c--c----cCCCCcEEEEecCC-------cEEEeCCCcCcceeeec
Confidence 33467777877766655555443222 1 1 23355555555566 89999998877666544
No 98
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=95.11 E-value=0.69 Score=39.30 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
+..+...+.++..+....+.+...++.++++.+.++.+.-.+...+..
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~ 55 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEK 55 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666677777777777666666555444444333
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.10 E-value=1 Score=37.27 Aligned_cols=72 Identities=14% Similarity=0.198 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+..+....+........+...-+..+..++.+++....++..+..++...++.-..+.+.+++.+.+...+.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444445555555555555555555555555555555555555555555554
No 100
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.07 E-value=2.3 Score=42.87 Aligned_cols=240 Identities=13% Similarity=0.047 Sum_probs=119.2
Q ss_pred ccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCcccee-EEEE-CCEEEEEcccCCCCC-----CCceEEEEE
Q 010847 43 FLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHC-MVKW-GTKLLILGGHYKKSS-----DSMIVRFID 115 (499)
Q Consensus 43 ~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s-~~~~-~~~iyv~GG~~~~~~-----~~~~~~~yd 115 (499)
-...+.++|+.++....-.. ....++ ++-. +++.|++........ ....++.+.
T Consensus 148 e~~~l~v~Dl~tg~~l~d~i-------------------~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 148 EWYTLRVFDLETGKFLPDGI-------------------ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp SEEEEEEEETTTTEEEEEEE-------------------EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred ceEEEEEEECCCCcCcCCcc-------------------cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 34468999999995443221 122222 2222 334554544433211 245688888
Q ss_pred CCCCcEEEeecCCCCCCCCc-ceEEEEE-CC-EEEEEcCcCCCCCccCcEEEEECCCC-----eeEEeeecCCCCCCCcc
Q 010847 116 LETNLCGVMETSGKVPVARG-GHSVTLV-GS-RLIIFGGEDRSRKLLNDVHFLDLETM-----TWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 116 ~~t~~W~~~~~~g~~p~~r~-~~~~~~~-~~-~lyv~GG~~~~~~~~~~v~~yd~~t~-----~W~~~~~~~~~p~~r~~ 187 (499)
+.+..-...... ..+.... ...+..- ++ .|++.-..... .++++.+|.... .|..+... ..- .
T Consensus 209 ~gt~~~~d~lvf-e~~~~~~~~~~~~~s~d~~~l~i~~~~~~~---~s~v~~~d~~~~~~~~~~~~~l~~~----~~~-~ 279 (414)
T PF02897_consen 209 LGTPQSEDELVF-EEPDEPFWFVSVSRSKDGRYLFISSSSGTS---ESEVYLLDLDDGGSPDAKPKLLSPR----EDG-V 279 (414)
T ss_dssp TTS-GGG-EEEE-C-TTCTTSEEEEEE-TTSSEEEEEEESSSS---EEEEEEEECCCTTTSS-SEEEEEES----SSS--
T ss_pred CCCChHhCeeEE-eecCCCcEEEEEEecCcccEEEEEEEcccc---CCeEEEEeccccCCCcCCcEEEeCC----CCc-e
Confidence 888765422211 2222222 2222222 33 44443332211 378999999875 78888641 111 1
Q ss_pred ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc---eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEE
Q 010847 188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE---WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETI 264 (499)
Q Consensus 188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~---W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 264 (499)
...+...++.+|+... .......|..+++.+.. |..+-. +......--.+...++.|++..= .+....+.
T Consensus 280 ~~~v~~~~~~~yi~Tn--~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~ 352 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTN--DDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLSYR---ENGSSRLR 352 (414)
T ss_dssp EEEEEEETTEEEEEE---TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEE---ETTEEEEE
T ss_pred EEEEEccCCEEEEeeC--CCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEEECCEEEEEEE---ECCccEEE
Confidence 1222233666888765 23444678999988765 664311 11111223344455788777642 23356789
Q ss_pred EEECC-CCceEEeccCCCCCCCCCCCCceEEEE--EcCceEEEEEcCCCCCCCceEEEEECCCCCC
Q 010847 265 VLNMT-KLAWSILTSVKGRNPLASEGLSVCSAI--IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDI 327 (499)
Q Consensus 265 ~~d~~-~~~W~~l~~~~~~~p~~~~~~~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W 327 (499)
++|+. +..-..++.+. .+. ..... ...+...|.+.+... ...+|.||+.+++.
T Consensus 353 v~~~~~~~~~~~~~~p~-------~g~-v~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPE-------AGS-VSGVSGDFDSDELRFSYSSFTT--PPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSS-------SSE-EEEEES-TT-SEEEEEEEETTE--EEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCc-------ceE-EeccCCCCCCCEEEEEEeCCCC--CCEEEEEECCCCCE
Confidence 99998 44333433221 111 11111 123456666676643 45799999987654
No 101
>PRK09039 hypothetical protein; Validated
Probab=94.99 E-value=0.35 Score=47.17 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=9.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhHH
Q 010847 436 RSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+.++..|++++..++.|+..++
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443333
No 102
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.93 E-value=5.4 Score=41.27 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=64.3
Q ss_pred eEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--EEEeecCC-CCCC-CCcceEEEEEC-CEEEEEcCcCCCCCccCc
Q 010847 87 CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL--CGVMETSG-KVPV-ARGGHSVTLVG-SRLIIFGGEDRSRKLLND 161 (499)
Q Consensus 87 s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~--W~~~~~~g-~~p~-~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~ 161 (499)
+.++.++.||+.... ..++.+|..+++ |+.-.... .... +.....++..+ +++|+... ...
T Consensus 56 sPvv~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-------~g~ 121 (488)
T cd00216 56 TPLVVDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-------DGR 121 (488)
T ss_pred CCEEECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC-------CCe
Confidence 346778999986542 239999998764 87643211 0000 11111233445 77776432 246
Q ss_pred EEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCC----CCCCcEEEEECCCCc--eEec
Q 010847 162 VHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHS----IFFNDLHVLDLQTNE--WSQP 226 (499)
Q Consensus 162 v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~----~~~~~i~~~d~~~~~--W~~~ 226 (499)
++++|..|+ .|+.-......+......+.++. ++. +++|..+.. .....++.||..+++ |+.-
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 899999876 48654311000000011222333 564 445432211 124578999998875 8763
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.87 E-value=0.76 Score=40.83 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=11.9
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 430 GQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+.++..++++..++....++.++.+.++
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333
No 104
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.85 E-value=5.2 Score=40.67 Aligned_cols=190 Identities=9% Similarity=0.027 Sum_probs=96.7
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.+++-..+..... .-...+...-+.+|++.....+ ...++++|+.++....+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g----------------~~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~l 287 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRG----------------INGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRL 287 (433)
T ss_pred cEEEEEECCCCCEEEeccCCC----------------CccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEEC
Confidence 468999999888766543221 1111112222455655433222 24599999999887666
Q ss_pred ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847 125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG 202 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G 202 (499)
.. .+..... ....-++ .|++.....+ ...+|.+|+.+.+...+...+ ......... ++++|++..
T Consensus 288 t~---~~~~~~~-~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 288 TN---HFGIDTE-PTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVH 354 (433)
T ss_pred cc---CCCCccc-eEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEE
Confidence 42 1111111 1122234 4544432221 347999999888887775322 222222222 344555544
Q ss_pred CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 277 (499)
Q Consensus 203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~ 277 (499)
+.+ . ...++++|+.++....+.... . ... ....-+++.+++.... .....++.+|+....=..+.
T Consensus 355 ~~~-~--~~~I~v~d~~~g~~~~Lt~~~-~---~~~-p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 355 GSG-G--QYRIAVMDLSTGSVRTLTPGS-L---DES-PSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCC-C--ceeEEEEECCCCCeEECCCCC-C---CCC-ceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcc
Confidence 321 1 237999999888887664211 1 111 1222245555554322 22346888888655434443
No 105
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.81 E-value=0.69 Score=44.18 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=26.1
Q ss_pred hHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 397 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+++.+++.+..++++.+.+..+.+...++..+.++.+.++.++..+-.+-+++..+++.++
T Consensus 111 l~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 111 LQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444333344444444433
No 106
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.78 E-value=0.4 Score=46.07 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=25.4
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 453 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 453 (499)
...+++.++...+.++.....++++.+++++..++++.+++..+......+
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555554444433
No 107
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.73 E-value=5.7 Score=40.59 Aligned_cols=149 Identities=17% Similarity=0.181 Sum_probs=79.3
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 188 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 188 (499)
..++++|+.++.-..+. ..+.........--+..|++....++ ..+++.+|+.+++...+.... .. ..
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~~-~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----AI-DT 309 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----CC-cc
Confidence 46999999998776665 23321111111112345665533221 357999999998887765311 11 11
Q ss_pred eEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847 189 SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 267 (499)
Q Consensus 189 ~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d 267 (499)
..+.. ++..|++.....+ ...+|.+|+.+++++.+...+.. .......-+++.+++.+.. ....+++++|
T Consensus 310 ~p~wSpDG~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g~~----~~~~~~SpDG~~l~~~~~~--~g~~~I~~~d 380 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEGEQ----NLGGSITPDGRSMIMVNRT--NGKFNIARQD 380 (448)
T ss_pred ceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEEecCCCC----CcCeeECCCCCEEEEEEec--CCceEEEEEE
Confidence 12222 2444444432221 25799999999988887421211 1111122234434343322 1234789999
Q ss_pred CCCCceEEecc
Q 010847 268 MTKLAWSILTS 278 (499)
Q Consensus 268 ~~~~~W~~l~~ 278 (499)
+.++....+..
T Consensus 381 l~~g~~~~lt~ 391 (448)
T PRK04792 381 LETGAMQVLTS 391 (448)
T ss_pred CCCCCeEEccC
Confidence 99988776643
No 108
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.68 E-value=2 Score=39.71 Aligned_cols=154 Identities=14% Similarity=-0.022 Sum_probs=80.1
Q ss_pred cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCC--ceEEEEECCCCcEEE
Q 010847 46 DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDS--MIVRFIDLETNLCGV 123 (499)
Q Consensus 46 ~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~--~~~~~yd~~t~~W~~ 123 (499)
.+.++|+.+++++.+..... +..+..+.+-.++.-++.||+.--........ ..++++++. ++...
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~-----------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPD-----------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp CEEEEETTTTEEEEEEEEET-----------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred ceEEEecCCCcEEEEeeccC-----------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 45677999999998877531 11123444444444467888753222221112 569999999 66665
Q ss_pred eecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCC--CeeEEeeecCCCCCCCc-cceEEEEcCcEEE
Q 010847 124 METSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLET--MTWDAVEVTQTPPAPRY-DHSAALHANRYLI 199 (499)
Q Consensus 124 ~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~p~~r~-~~~~~~~~~~~l~ 199 (499)
+.. .+. ..+..+..-++ .||+.-- ..+.++.|++.. ..+........++.... --.++...++.||
T Consensus 129 ~~~--~~~--~pNGi~~s~dg~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~ 198 (246)
T PF08450_consen 129 VAD--GLG--FPNGIAFSPDGKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW 198 (246)
T ss_dssp EEE--EES--SEEEEEEETTSSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred Eec--Ccc--cccceEECCcchheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence 542 111 11222222233 5776311 355699999853 33443332212222221 2234444567788
Q ss_pred EEcCCCCCCCCCcEEEEECCCCceEec
Q 010847 200 VFGGCSHSIFFNDLHVLDLQTNEWSQP 226 (499)
Q Consensus 200 v~GG~~~~~~~~~i~~~d~~~~~W~~~ 226 (499)
+..- ..+.|++||+....-..+
T Consensus 199 va~~-----~~~~I~~~~p~G~~~~~i 220 (246)
T PF08450_consen 199 VADW-----GGGRIVVFDPDGKLLREI 220 (246)
T ss_dssp EEEE-----TTTEEEEEETTSCEEEEE
T ss_pred EEEc-----CCCEEEEECCCccEEEEE
Confidence 8622 124799999985555555
No 109
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.68 E-value=0.44 Score=51.89 Aligned_cols=52 Identities=29% Similarity=0.410 Sum_probs=21.4
Q ss_pred HhhhhhHHHHHHhhccc-hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847 402 TENSRFREKIDEVNSTH-SELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 453 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 453 (499)
.....++..+...+.+. .+...++.+.++.+.+++.++++++.++..+..++
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444443333333 33333334444444444444444444444443333
No 110
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.65 E-value=0.23 Score=44.25 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+...+..+++..+..+.+....+..++.++..++.++..++..+.++++-++.++
T Consensus 96 ~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 96 QLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666666666666666666665554444
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.61 E-value=0.58 Score=48.73 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFR 408 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~ 408 (499)
+..|+.+++.+++..++.+.+.++++
T Consensus 326 qaELerRRq~leeqqqreree~eqkE 351 (1118)
T KOG1029|consen 326 QAELERRRQALEEQQQREREEVEQKE 351 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666555554444444443
No 112
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.53 E-value=0.93 Score=40.62 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=9.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Q 010847 429 QGQLVAERSRCFKLEAQIAELQK 451 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~e~~~ 451 (499)
+..+.+.+..++.+...+.|++|
T Consensus 97 eddlsqt~aikeql~kyiReLEQ 119 (333)
T KOG1853|consen 97 EDDLSQTHAIKEQLRKYIRELEQ 119 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443333
No 113
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.51 E-value=0.45 Score=45.74 Aligned_cols=20 Identities=5% Similarity=0.315 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~ 477 (499)
.++.++.+++++.+++..+.
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555444443
No 114
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.39 E-value=2.9 Score=38.79 Aligned_cols=141 Identities=21% Similarity=0.170 Sum_probs=82.0
Q ss_pred cCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEE
Q 010847 44 LSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGV 123 (499)
Q Consensus 44 ~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~ 123 (499)
-+.+..||+.+++-.....++ ..-.+-.++.++++||..-=. ....++||+.+. +.
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~----------------~~~FgEGit~~~d~l~qLTWk------~~~~f~yd~~tl--~~ 122 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLP----------------PRYFGEGITILGDKLYQLTWK------EGTGFVYDPNTL--KK 122 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-T----------------TT--EEEEEEETTEEEEEESS------SSEEEEEETTTT--EE
T ss_pred cEEEEEEECCCCcEEEEEECC----------------ccccceeEEEECCEEEEEEec------CCeEEEEccccc--eE
Confidence 367889999999877665553 356888899999999988422 334899999875 44
Q ss_pred eecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCee-EEeeecC-CCCCCCccceEEEEcCcEEEEE
Q 010847 124 METSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW-DAVEVTQ-TPPAPRYDHSAALHANRYLIVF 201 (499)
Q Consensus 124 ~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~~-~~p~~r~~~~~~~~~~~~l~v~ 201 (499)
+. ..+.+..|-.++..+..|++--| ++.++.+||.+.+= ..+.+.. ..|..+- --+-.+ ++.||.
T Consensus 123 ~~---~~~y~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~~~~~i~V~~~g~pv~~L-NELE~i-~G~IyA- 189 (264)
T PF05096_consen 123 IG---TFPYPGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFKEVRTIQVTDNGRPVSNL-NELEYI-NGKIYA- 189 (264)
T ss_dssp EE---EEE-SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-SEEEEEE-EETTEE---E-EEEEEE-TTEEEE-
T ss_pred EE---EEecCCcceEEEcCCCEEEEECC-------ccceEEECCcccceEEEEEEEECCEECCCc-EeEEEE-cCEEEE-
Confidence 44 34445678888888888998766 55799999987543 2232221 1111110 001111 343443
Q ss_pred cCCCCCCCCCcEEEEECCCCceEe
Q 010847 202 GGCSHSIFFNDLHVLDLQTNEWSQ 225 (499)
Q Consensus 202 GG~~~~~~~~~i~~~d~~~~~W~~ 225 (499)
+--..+.|.+.|+.++.-..
T Consensus 190 ----NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 190 ----NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp ----EETTSSEEEEEETTT-BEEE
T ss_pred ----EeCCCCeEEEEeCCCCeEEE
Confidence 22346789999999987433
No 115
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.30 E-value=0.3 Score=42.80 Aligned_cols=71 Identities=21% Similarity=0.387 Sum_probs=40.3
Q ss_pred HHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHh
Q 010847 399 EVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQ 469 (499)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~ 469 (499)
..+....+++.++++...+++++.+++++++.+++..++++..++.+...+++.++.+. +|.++..++...
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34445556666666666666666666666666666666666666655544444443332 444444444443
No 116
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.29 E-value=7 Score=39.75 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=76.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 187 (499)
..++++|+.++.-..+. ..+... ......- +.+|++....++ ..+++++|+.+.....+... + .. .
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~~-~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~~-~ 294 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGIN-GAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-GI-D 294 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCCc-cCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-CC-c
Confidence 45999999998877665 233211 1112222 345654432221 24799999998876665421 1 11 1
Q ss_pred ceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE--CCEEEEEeCCCCCCCcceEE
Q 010847 188 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI--DENWYIVGGGDNNNGCQETI 264 (499)
Q Consensus 188 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~ 264 (499)
.......++ .|++.....+ ...+|.+|+.++....+...+ .+....... ++.+++..+ .+ ....++
T Consensus 295 ~~~~~spDG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~~--~~~~I~ 363 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG-SG--GQYRIA 363 (433)
T ss_pred cceEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC-CC--CceeEE
Confidence 122223344 3443332221 247999999888887764221 111122222 344555443 21 223789
Q ss_pred EEECCCCceEEecc
Q 010847 265 VLNMTKLAWSILTS 278 (499)
Q Consensus 265 ~~d~~~~~W~~l~~ 278 (499)
++|+.++....+..
T Consensus 364 v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 364 VMDLSTGSVRTLTP 377 (433)
T ss_pred EEECCCCCeEECCC
Confidence 99998888776643
No 117
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.25 E-value=7.1 Score=39.69 Aligned_cols=187 Identities=17% Similarity=0.092 Sum_probs=90.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDH 188 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~ 188 (499)
..++++|+.++....+. ..+.........-.+.+|++....+. ..++|.+|+.+.....+... + ....
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~-~~~~- 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---P-AIDT- 293 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---C-CccC-
Confidence 45999999999887775 33322222222122345555433222 35799999998877666431 1 1111
Q ss_pred eEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECC-EEEEEeCCCCCCCcceEEEEE
Q 010847 189 SAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDE-NWYIVGGGDNNNGCQETIVLN 267 (499)
Q Consensus 189 ~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~d 267 (499)
......++.-++|..... ....+|++|+.+...+.+... ..........-++ .|++... .. ....++++|
T Consensus 294 ~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~-~~--~~~~i~~~d 364 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRS--GSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQ-GG--GQFSIGVMK 364 (435)
T ss_pred ceeEcCCCCEEEEEECCC--CCCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEc-CC--CceEEEEEE
Confidence 112222333333432111 124799999988777766321 1111111122233 4444332 11 124788999
Q ss_pred CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCC-CceEEEEECCCC
Q 010847 268 MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKY-NNEVFVMRLKPR 325 (499)
Q Consensus 268 ~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~~~~~ 325 (499)
+.+.....+.... . ........++ .+|+......+.. ...+|.+++...
T Consensus 365 ~~~~~~~~lt~~~-~-------~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 365 PDGSGERILTSGF-L-------VEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCceEeccCCC-C-------CCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCC
Confidence 8777665553211 0 1111223333 3444333222221 257899998654
No 118
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.21 E-value=0.5 Score=47.73 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=11.4
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAE 435 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (499)
+...+..+..++++++.|++.++.+...+
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443333333
No 119
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.10 E-value=0.41 Score=42.76 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 010847 442 LEAQIAELQKML 453 (499)
Q Consensus 442 ~~~~~~e~~~~l 453 (499)
|+.+.+++++++
T Consensus 137 L~~~n~~L~~~l 148 (206)
T PRK10884 137 LKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 120
>PRK09039 hypothetical protein; Validated
Probab=94.09 E-value=0.63 Score=45.41 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=28.7
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
...+..++.+.+....+...+++.++++++.+++++..++..+...+++.+..
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~ 170 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRES 170 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555566666666666666666555555554333
No 121
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.07 E-value=0.55 Score=51.15 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
+..+...+++++..+.+.+....++...+.+.+..+..+..++.+++.
T Consensus 677 ~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 677 ILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666667777777777777777777777777777777777666
No 122
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=93.96 E-value=0.48 Score=41.45 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeee
Q 010847 423 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWI 495 (499)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~~ 495 (499)
..+++.-..|+.++.|+..|.+-..-+..+|+... .|..+++.+..+...+.++++.-+..-+.....+..|+
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~ 136 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYL 136 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44666777788888888888777777777776665 56677777666666666666544433333333344443
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.95 E-value=0.33 Score=52.03 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=15.5
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHH
Q 010847 405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 443 (499)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (499)
..|+.+.+....++.+.+++++.++..-+.+.+|.++..
T Consensus 568 ~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~ 606 (717)
T PF10168_consen 568 KLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK 606 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444433333344443333
No 124
>PRK00178 tolB translocation protein TolB; Provisional
Probab=93.82 E-value=8.5 Score=39.03 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=77.6
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 187 (499)
..++++|+.++.-..+. ..+.. .......-+ ++|++....++ ..++|++|+.+.....+... + .. .
T Consensus 223 ~~l~~~~l~~g~~~~l~---~~~g~-~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~-~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT---NFEGL-NGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AI-D 289 (430)
T ss_pred CEEEEEECCCCCEEEcc---CCCCC-cCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CC-c
Confidence 45999999998877765 22211 111112223 45554322211 25799999999988776531 1 11 1
Q ss_pred ceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC-CEEEEEeCCCCCCCcceEEE
Q 010847 188 HSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYIVGGGDNNNGCQETIV 265 (499)
Q Consensus 188 ~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~ 265 (499)
...... +++.|++.....+ ...+|.+|+.++.++.+...+ .........-+ +.+++... .. ...++++
T Consensus 290 ~~~~~spDg~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~-~~--~~~~l~~ 359 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHR-QD--GNFHVAA 359 (430)
T ss_pred CCeEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEc-cC--CceEEEE
Confidence 112222 2344544432221 247999999988887764211 11111111223 34444432 21 1346999
Q ss_pred EECCCCceEEecc
Q 010847 266 LNMTKLAWSILTS 278 (499)
Q Consensus 266 ~d~~~~~W~~l~~ 278 (499)
+|+.++..+.+..
T Consensus 360 ~dl~tg~~~~lt~ 372 (430)
T PRK00178 360 QDLQRGSVRILTD 372 (430)
T ss_pred EECCCCCEEEccC
Confidence 9999988887754
No 125
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.76 E-value=0.95 Score=39.78 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+++.+.+.+.+.++..+++.++.+.+.+|+++.
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 126
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=93.75 E-value=1.4 Score=41.35 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhHH-HHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTE-VRTENSRFREKIDEVNSTHSELSKELS 426 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (499)
++.++.++..+-..+.+ ..--+..|..++.++..+..+++..++
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le 130 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLE 130 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554322221 112233444444444444444444433
No 127
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=93.67 E-value=1.3 Score=40.30 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=35.8
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHH-------HHHHHHHHhHHHHHHHHHH
Q 010847 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIE-------NEVQILRQQKSAFEQEMER 479 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~-------~e~~~~~~~~~~~~~~~~~ 479 (499)
++..+...++...+...++.+++.+-+.|..++...+.+...|+... -++ +.++.+.+++.....++|+
T Consensus 48 LqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 48 LQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELER 127 (307)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344455666777777777777766655555543332 233 3444444444444445543
Q ss_pred h
Q 010847 480 A 480 (499)
Q Consensus 480 ~ 480 (499)
.
T Consensus 128 s 128 (307)
T PF10481_consen 128 S 128 (307)
T ss_pred H
Confidence 3
No 128
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=0.8 Score=46.35 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=21.9
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 453 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 453 (499)
..+.+..+.+.+...+..++.+..++.+.+...+.++.++.+..+++.++
T Consensus 275 ~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 275 VNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444443
No 129
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.59 E-value=1.3 Score=43.29 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=4.4
Q ss_pred ceEEEEECC
Q 010847 315 NEVFVMRLK 323 (499)
Q Consensus 315 ~~~~~~~~~ 323 (499)
..+|.+++.
T Consensus 267 ~H~yalel~ 275 (493)
T KOG0804|consen 267 GHCYALELE 275 (493)
T ss_pred cceEEEeec
Confidence 345555553
No 130
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.58 E-value=0.5 Score=47.03 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=8.9
Q ss_pred CCCCcccccchhhHHHHHHH
Q 010847 370 IGNDLSEKDVRTDIDAIKED 389 (499)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~ 389 (499)
...+...++++.-+.++++-
T Consensus 52 iegDTP~DTlrTlva~~k~~ 71 (472)
T TIGR03752 52 IEGDTPADTLRTLVAEVKEL 71 (472)
T ss_pred CCCCCccchHHHHHHHHHHH
Confidence 34444455554444444333
No 131
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.51 E-value=8.2 Score=37.86 Aligned_cols=247 Identities=16% Similarity=0.110 Sum_probs=115.2
Q ss_pred EEEcCCCCCcccC--cEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 33 YIVGGSRNGRFLS--DVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 33 ~~~GG~~~~~~~~--~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
+++|++..+. -. .++.||..++++..+...... ......+...-++.||+..... .. ...
T Consensus 2 ~~vgsy~~~~-~~gI~~~~~d~~~g~l~~~~~~~~~--------------~~Ps~l~~~~~~~~LY~~~e~~-~~--~g~ 63 (345)
T PF10282_consen 2 LYVGSYTNGK-GGGIYVFRFDEETGTLTLVQTVAEG--------------ENPSWLAVSPDGRRLYVVNEGS-GD--SGG 63 (345)
T ss_dssp EEEEECCSSS-STEEEEEEEETTTTEEEEEEEEEES--------------SSECCEEE-TTSSEEEEEETTS-ST--TTE
T ss_pred EEEEcCCCCC-CCcEEEEEEcCCCCCceEeeeecCC--------------CCCceEEEEeCCCEEEEEEccc-cC--CCC
Confidence 3566664311 12 345567799999988764211 0111112222357788875543 11 223
Q ss_pred EEEE--ECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCCC-eeEEeee------c
Q 010847 111 VRFI--DLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETM-TWDAVEV------T 178 (499)
Q Consensus 111 ~~~y--d~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~-~W~~~~~------~ 178 (499)
+..| +..+++.+.+. ..+..-...+.+.+ +..||+.- +. ...+.+|++..+ .-..... .
T Consensus 64 v~~~~i~~~~g~L~~~~---~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~ 134 (345)
T PF10282_consen 64 VSSYRIDPDTGTLTLLN---SVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGS 134 (345)
T ss_dssp EEEEEEETTTTEEEEEE---EEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEE
T ss_pred EEEEEECCCcceeEEee---eeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCC
Confidence 5555 45557887776 33322222233333 34566642 11 345788888663 3322211 1
Q ss_pred CCC---CCCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCCCc--eEecccCCCCCCcCcccE-EEEE--CCEEE
Q 010847 179 QTP---PAPRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQTNE--WSQPEIKGDLVTGRAGHA-GITI--DENWY 249 (499)
Q Consensus 179 ~~~---p~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~~~--W~~~~~~~~~p~~r~~~~-~~~~--~~~l~ 249 (499)
+.- ...-..|.+....+ +++|+.. . -.+.|+.|++.... ....... ..|. -.+.. ++.. +..+|
T Consensus 135 g~~~~rq~~~h~H~v~~~pdg~~v~v~d-l----G~D~v~~~~~~~~~~~l~~~~~~-~~~~-G~GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 135 GPNPDRQEGPHPHQVVFSPDGRFVYVPD-L----GADRVYVYDIDDDTGKLTPVDSI-KVPP-GSGPRHLAFSPDGKYAY 207 (345)
T ss_dssp ESSTTTTSSTCEEEEEE-TTSSEEEEEE-T----TTTEEEEEEE-TTS-TEEEEEEE-ECST-TSSEEEEEE-TTSSEEE
T ss_pred CCcccccccccceeEEECCCCCEEEEEe-c----CCCEEEEEEEeCCCceEEEeecc-cccc-CCCCcEEEEcCCcCEEE
Confidence 111 12233455555544 5566642 1 14679999887665 5442211 1121 22222 2333 34788
Q ss_pred EEeCCCCCCCcceEEEEECC--CCceEEeccCCCCCCCCCCC--CceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847 250 IVGGGDNNNGCQETIVLNMT--KLAWSILTSVKGRNPLASEG--LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 323 (499)
Q Consensus 250 v~GG~~~~~~~~~~~~~d~~--~~~W~~l~~~~~~~p~~~~~--~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 323 (499)
|+...+ +.+.+|+.. +..++.+...+.... ...+ ......+..+..+||+.-.. .+.|.+|+++
T Consensus 208 v~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~ispdg~~lyvsnr~----~~sI~vf~~d 275 (345)
T PF10282_consen 208 VVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPE-GFTGENAPAEIAISPDGRFLYVSNRG----SNSISVFDLD 275 (345)
T ss_dssp EEETTT-----TEEEEEEEETTTTEEEEEEEEESCET-TSCSSSSEEEEEE-TTSSEEEEEECT----TTEEEEEEEC
T ss_pred EecCCC-----CcEEEEeecccCCceeEEEEeeeccc-cccccCCceeEEEecCCCEEEEEecc----CCEEEEEEEe
Confidence 886532 345555544 667766543332211 1111 22333334445688875432 4477788873
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=93.46 E-value=6.8 Score=38.70 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=32.1
Q ss_pred ccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE---E-CCEEEEEcCcCC
Q 010847 83 MSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL---V-GSRLIIFGGEDR 154 (499)
Q Consensus 83 r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~---~-~~~lyv~GG~~~ 154 (499)
-.-++++..+.-.|++||.-. .++|.+.+.++.--.+- .+++-+.+. . ++..++-||.++
T Consensus 82 g~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~-------~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVL-------SAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred cceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHH-------HhhccceeEEEEeCCCcEEEecCCCc
Confidence 345666666766777777322 23888777776422211 112222222 2 457777777664
No 133
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.45 E-value=0.73 Score=53.38 Aligned_cols=6 Identities=33% Similarity=0.462 Sum_probs=2.7
Q ss_pred EEEcCC
Q 010847 304 VAFGGY 309 (499)
Q Consensus 304 ~v~GG~ 309 (499)
+|++|.
T Consensus 138 ~~~qg~ 143 (1164)
T TIGR02169 138 VVLQGD 143 (1164)
T ss_pred EEecch
Confidence 344553
No 134
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=93.45 E-value=1.1 Score=46.81 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=3.6
Q ss_pred CEEEEEccc
Q 010847 93 TKLLILGGH 101 (499)
Q Consensus 93 ~~iyv~GG~ 101 (499)
++--|.||+
T Consensus 216 dk~~VvGGy 224 (1259)
T KOG0163|consen 216 DKGQVVGGY 224 (1259)
T ss_pred CCCceechh
Confidence 333344443
No 135
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.38 E-value=10 Score=38.52 Aligned_cols=190 Identities=10% Similarity=0.025 Sum_probs=94.8
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.+++-+.+..... .-.......-+..|++.....+ ...++.+|+.++....+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~----------------~~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPR----------------HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQV 282 (429)
T ss_pred cEEEEEECCCCCeEEccCCCC----------------CcCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEc
Confidence 468889998887665543321 0111122222455665533222 23599999999887776
Q ss_pred ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc-CcEEEEEc
Q 010847 125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA-NRYLIVFG 202 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~-~~~l~v~G 202 (499)
.. .+..... ....-++ .|++...... ...+|.+|+.+..-..+...+ .. ........ ++.|++.+
T Consensus 283 t~---~~~~~~~-~~wSPDG~~I~f~s~~~g----~~~Iy~~d~~~g~~~~lt~~~----~~-~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 283 TD---GRSNNTE-PTWFPDSQNLAYTSDQAG----RPQVYKVNINGGAPQRITWEG----SQ-NQDADVSSDGKFMVMVS 349 (429)
T ss_pred cC---CCCCcCc-eEECCCCCEEEEEeCCCC----CceEEEEECCCCCeEEeecCC----CC-ccCEEECCCCCEEEEEE
Confidence 52 2211111 1112234 4544332211 347899999887766664321 11 11222223 34444433
Q ss_pred CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEec
Q 010847 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILT 277 (499)
Q Consensus 203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~ 277 (499)
...+ ...++.+|+.++.+..+... . ........-+++.+++.+.+.. ...+++.++....=..++
T Consensus 350 ~~~g---~~~I~~~dl~~g~~~~Lt~~--~---~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 350 SNGG---QQHIAKQDLATGGVQVLTDT--F---LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 414 (429)
T ss_pred ccCC---CceEEEEECCCCCeEEeCCC--C---CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEECc
Confidence 3222 24699999999988877421 1 1111122235566666554322 235677776555444443
No 136
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=93.37 E-value=0.43 Score=47.44 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~ 477 (499)
++++++++++.++.++.++|
T Consensus 120 ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 120 QLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 137
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.36 E-value=8.6 Score=37.65 Aligned_cols=119 Identities=14% Similarity=0.056 Sum_probs=66.3
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCC---CCC
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKK---SSD 107 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~---~~~ 107 (499)
.+||.-...... .+.+.++|..+++-...-+.+. .|| +.+..-+..||+.-.+... +..
T Consensus 14 ~v~V~d~~~~~~-~~~v~ViD~~~~~v~g~i~~G~---------------~P~--~~~spDg~~lyva~~~~~R~~~G~~ 75 (352)
T TIGR02658 14 RVYVLDPGHFAA-TTQVYTIDGEAGRVLGMTDGGF---------------LPN--PVVASDGSFFAHASTVYSRIARGKR 75 (352)
T ss_pred EEEEECCccccc-CceEEEEECCCCEEEEEEEccC---------------CCc--eeECCCCCEEEEEeccccccccCCC
Confidence 678876532222 2789999999866443333321 133 2344446789988764322 224
Q ss_pred CceEEEEECCCCcEEEeecCCCCCCCCc-----c-eEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEE
Q 010847 108 SMIVRFIDLETNLCGVMETSGKVPVARG-----G-HSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDA 174 (499)
Q Consensus 108 ~~~~~~yd~~t~~W~~~~~~g~~p~~r~-----~-~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 174 (499)
.+.+.+||+.|.+-..--.. ++.||. - ..+..-++ .||+. ..+ ..+.+.+.|+.+.+-..
T Consensus 76 ~d~V~v~D~~t~~~~~~i~~--p~~p~~~~~~~~~~~~ls~dgk~l~V~-n~~----p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 76 TDYVEVIDPQTHLPIADIEL--PEGPRFLVGTYPWMTSLTPDNKTLLFY-QFS----PSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCEEEEEECccCcEEeEEcc--CCCchhhccCccceEEECCCCCEEEEe-cCC----CCCEEEEEECCCCcEEE
Confidence 67799999999976543322 223331 1 12222244 57765 221 24678888888776543
No 138
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.35 E-value=2.1 Score=39.87 Aligned_cols=15 Identities=0% Similarity=0.076 Sum_probs=5.5
Q ss_pred hhhhHHHHHHhhccc
Q 010847 404 NSRFREKIDEVNSTH 418 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~ 418 (499)
...|..+++..+.++
T Consensus 51 ~~~L~~e~~~l~~e~ 65 (251)
T PF11932_consen 51 KQELLAEYRQLEREI 65 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 139
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.32 E-value=0.74 Score=45.18 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010847 383 IDAIKEDKR 391 (499)
Q Consensus 383 ~~~l~~~~~ 391 (499)
++.++...+
T Consensus 273 i~~lk~~n~ 281 (622)
T COG5185 273 IANLKTQND 281 (622)
T ss_pred HHHHHHHHH
Confidence 333333333
No 140
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.30 E-value=0.99 Score=52.11 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhh
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERS 437 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (499)
.+.|.++...++..+.......++++..+...+..+.+..+++...+.+++..+.
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQ 656 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444444444444444444555555555555555554444444444443333
No 141
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.24 E-value=1.7 Score=40.71 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=2.7
Q ss_pred HHHHHhc
Q 010847 346 TAAYALA 352 (499)
Q Consensus 346 ~~~~~~~ 352 (499)
.|.|.++
T Consensus 53 gwff~i~ 59 (401)
T PF06785_consen 53 GWFFAIG 59 (401)
T ss_pred HHHHHhh
Confidence 3344333
No 142
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.20 E-value=3.5 Score=35.83 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=6.2
Q ss_pred HhhhhhHHHHHHhhcc
Q 010847 402 TENSRFREKIDEVNST 417 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~ 417 (499)
...++|..++..++.+
T Consensus 36 e~na~L~~e~~~L~~q 51 (193)
T PF14662_consen 36 EGNAQLAEEITDLRKQ 51 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444443333333
No 143
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=93.04 E-value=9.2 Score=37.10 Aligned_cols=146 Identities=17% Similarity=0.083 Sum_probs=69.1
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCC-CceEEeeeCcccccCccccCCCCCCCCCccceeEEE--ECCEEEEEcccCCCCCC
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVK--WGTKLLILGGHYKKSSD 107 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~--~~~~iyv~GG~~~~~~~ 107 (499)
++|+..+. -..+.+||+.+ +++..+..... ....+.++. -+..||+.+. .
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~~----------------~~~~~~l~~spd~~~lyv~~~-~----- 55 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVDV----------------PGQVQPMVISPDKRHLYVGVR-P----- 55 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEec----------------CCCCccEEECCCCCEEEEEEC-C-----
Confidence 46666443 24578888863 67776655421 111112222 2455666433 2
Q ss_pred CceEEEEECC-CCcEEEeecCCCCCCCC-cceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCe-e-EEeeecCCCC
Q 010847 108 SMIVRFIDLE-TNLCGVMETSGKVPVAR-GGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMT-W-DAVEVTQTPP 182 (499)
Q Consensus 108 ~~~~~~yd~~-t~~W~~~~~~g~~p~~r-~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~-W-~~~~~~~~~p 182 (499)
...+..|++. ++.+..+.. .+.+- ..+.+..-++ .||+.. .. .+.+.+|++.++. . ..+.. .+
T Consensus 56 ~~~i~~~~~~~~g~l~~~~~---~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~---~~ 123 (330)
T PRK11028 56 EFRVLSYRIADDGALTFAAE---SPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQI---IE 123 (330)
T ss_pred CCcEEEEEECCCCceEEeee---ecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceee---cc
Confidence 2337777765 556665542 22111 1222222234 466553 22 3567888875431 1 11211 11
Q ss_pred CCCccceEEEEcC-cEEEEEcCCCCCCCCCcEEEEECCC
Q 010847 183 APRYDHSAALHAN-RYLIVFGGCSHSIFFNDLHVLDLQT 220 (499)
Q Consensus 183 ~~r~~~~~~~~~~-~~l~v~GG~~~~~~~~~i~~~d~~~ 220 (499)
.....|.++...+ +++|+.. . ..+.+.+||+.+
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~~-~----~~~~v~v~d~~~ 157 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVPC-L----KEDRIRLFTLSD 157 (330)
T ss_pred CCCcccEeEeCCCCCEEEEee-C----CCCEEEEEEECC
Confidence 1222344444434 4555543 2 235799999876
No 144
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=92.99 E-value=3.7 Score=33.68 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC-CcceEEEEE-CCCCc
Q 010847 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN-GCQETIVLN-MTKLA 272 (499)
Q Consensus 195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~~~~~d-~~~~~ 272 (499)
|+.+|-..-. .....+.|..||+.+.+|+.+..+...........++.++++|.++.-..... ..-++|+++ ..+..
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~ 83 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQE 83 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccce
Confidence 5545554433 33445779999999999999854212334556667888899988875543322 345889884 66788
Q ss_pred eEEecc
Q 010847 273 WSILTS 278 (499)
Q Consensus 273 W~~l~~ 278 (499)
|.+...
T Consensus 84 Wsk~~~ 89 (129)
T PF08268_consen 84 WSKKHI 89 (129)
T ss_pred EEEEEE
Confidence 997633
No 145
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.95 E-value=1.5 Score=40.16 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccch-HHHH------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHS-ELSK------ELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
++.|+.+.++.+..+.+-..++.+|+.+|-..++.=- |.-+ -|.+.+++.+++++-++-++..|.+. -+-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek---DkG 146 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK---DKG 146 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh---hhh
Confidence 4455555444444444433455555444443332211 0000 12233333444444444444443333 223
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847 456 SQTIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 456 ~~~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
+||...++....+.++.+.+..|-+
T Consensus 147 iQKYFvDINiQN~KLEsLLqsMElA 171 (305)
T PF15290_consen 147 IQKYFVDINIQNKKLESLLQSMELA 171 (305)
T ss_pred HHHHHhhhhhhHhHHHHHHHHHHHH
Confidence 3444445555556666666655533
No 146
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=92.92 E-value=1.1 Score=45.17 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=11.7
Q ss_pred cccccCCCceeeeec
Q 010847 482 SVQTQGSGGVWRWIA 496 (499)
Q Consensus 482 ~~q~q~~~~~~~~~~ 496 (499)
.-|+++++++|-|.+
T Consensus 436 ~vqeKK~s~IWqFFS 450 (832)
T KOG2077|consen 436 AVQEKKRSSIWQFFS 450 (832)
T ss_pred hhhhhccccHHHHHH
Confidence 457889999998753
No 147
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.87 E-value=2.9 Score=37.57 Aligned_cols=35 Identities=6% Similarity=0.286 Sum_probs=17.9
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhh
Q 010847 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR 438 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (499)
.+.|..++++++.++.+++.+.+.++-+++..+++
T Consensus 47 EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 47 EAELESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444444443
No 148
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=92.86 E-value=1.5 Score=32.39 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=43.8
Q ss_pred hhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010847 396 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 470 (499)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~ 470 (499)
.+...+.+...+..++...+....+.+..+.+.-++++..+.++.+|+.....++++ -++|+.++..++
T Consensus 5 lLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~------YEeEI~rLr~eL 73 (79)
T PF08581_consen 5 LLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ------YEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 344444555556666666666777777777777778888788877777776555544 244454444443
No 149
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.86 E-value=3.3 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=7.0
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 010847 436 RSRCFKLEAQIAELQKML 453 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l 453 (499)
++....++.++.+++.+.
T Consensus 65 r~e~~~~~~~~~~l~~~~ 82 (132)
T PF07926_consen 65 REELQELQQEINELKAEA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444443333333
No 150
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.82 E-value=3.6 Score=34.89 Aligned_cols=35 Identities=14% Similarity=0.334 Sum_probs=12.5
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHH
Q 010847 409 EKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 443 (499)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (499)
.+++..+..++.++.++++.+.++...+.++..++
T Consensus 66 ~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~ 100 (151)
T PF11559_consen 66 SDIERLQNDVERLKEQLEELERELASAEEKERQLQ 100 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 151
>PTZ00420 coronin; Provisional
Probab=92.77 E-value=15 Score=38.69 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=33.2
Q ss_pred EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847 145 RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 222 (499)
Q Consensus 145 ~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 222 (499)
.+++.||.+ ..+.++|+.+.+=. ... .. +..-.++....++.+++.++.+ ..+.+||+.+..
T Consensus 139 ~iLaSgS~D------gtIrIWDl~tg~~~-~~i--~~--~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~ 200 (568)
T PTZ00420 139 YIMCSSGFD------SFVNIWDIENEKRA-FQI--NM--PKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE 200 (568)
T ss_pred eEEEEEeCC------CeEEEEECCCCcEE-EEE--ec--CCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence 455666654 35888898776421 111 11 1112223223355567666543 358999988764
No 152
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.63 E-value=4.4 Score=36.97 Aligned_cols=118 Identities=15% Similarity=0.226 Sum_probs=58.2
Q ss_pred cceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcc--eEEEEECCEEEEEcCcCC-------
Q 010847 84 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGG--HSVTLVGSRLIIFGGEDR------- 154 (499)
Q Consensus 84 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~--~~~~~~~~~lyv~GG~~~------- 154 (499)
+..|+-.+++.||+.--.......-+.+.+.+..-..|+.+. .|..... .-.+.+++.||+||-.-.
T Consensus 192 sEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr----fp~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G 267 (367)
T PF12217_consen 192 SEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR----FPNNVHHTNLPFAKVGDVLYMFGSERAENEWEGG 267 (367)
T ss_dssp EEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-----TT---SS---EEEETTEEEEEEE-SSTT-SSTT
T ss_pred ccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc----ccccccccCCCceeeCCEEEEEeccccccccccC
Confidence 344566779999988544433333567888888888999995 4433332 234667999999985321
Q ss_pred ---CCC--ccCcEEE--E-----ECCCCeeEEeee---cCCCCCCCccceEEEEcCcEE-EEEcCCC
Q 010847 155 ---SRK--LLNDVHF--L-----DLETMTWDAVEV---TQTPPAPRYDHSAALHANRYL-IVFGGCS 205 (499)
Q Consensus 155 ---~~~--~~~~v~~--y-----d~~t~~W~~~~~---~~~~p~~r~~~~~~~~~~~~l-~v~GG~~ 205 (499)
++- .....+. . ++..-+|..+.. .|.......+...+++.|+.| |+|||-+
T Consensus 268 ~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 268 EPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp -----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred CCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 110 0111122 1 344556766653 233344445556666667755 6889854
No 153
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.58 E-value=2.5 Score=40.99 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhh
Q 010847 386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC 439 (499)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (499)
+..+....++.......+...++.+-+.....+++.|-+|+.+++++.++.+++
T Consensus 18 ~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 18 LNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444445555555555556666666655554443
No 154
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=92.55 E-value=3.7 Score=41.70 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCCccceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC--CEEEEEeCCCCCCC
Q 010847 183 APRYDHSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNNG 259 (499)
Q Consensus 183 ~~r~~~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~ 259 (499)
.|+.+.-++...-. -||+.|- -+++|++|++.+.|-.+- ..-...--++.++ +.|+.+||-++
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~-----~~~~~~lN~v~in~~hgLla~Gt~~g--- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPF-----ETDSGELNVVSINEEHGLLACGTEDG--- 197 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEcccccccccc-----ccccccceeeeecCccceEEecccCc---
Confidence 45555555554322 2555442 258999999999986531 1111222334443 46788877443
Q ss_pred cceEEEEECCCCceEEeccCCCC---CCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847 260 CQETIVLNMTKLAWSILTSVKGR---NPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 324 (499)
Q Consensus 260 ~~~~~~~d~~~~~W~~l~~~~~~---~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 324 (499)
.+..+|+.+.+-...-..+.. .|..-...+..++...++..-+-+|-.+| .+++||+..
T Consensus 198 --~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v~iyDLRa 259 (703)
T KOG2321|consen 198 --VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SVLIYDLRA 259 (703)
T ss_pred --eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cEEEEEccc
Confidence 356667655432211111111 11111122333444444334444554444 677777743
No 155
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.55 E-value=1.5 Score=37.92 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.|+.+...++.|+.++.+++.
T Consensus 158 aL~~e~~aaqaQL~~lQ~qv~ 178 (192)
T PF11180_consen 158 ALEAERRAAQAQLRQLQRQVR 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666665555554
No 156
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.50 E-value=2.4 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHH
Q 010847 423 KELSSVQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~ 446 (499)
+..+.++.+++.++||+++|+-.+
T Consensus 325 ERaesLQ~eve~lkEr~deletdl 348 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDL 348 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777775544
No 157
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.42 E-value=14 Score=37.56 Aligned_cols=149 Identities=9% Similarity=0.106 Sum_probs=76.7
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 187 (499)
..++.+|+.+++-..+. ..+..... ....-++ +|++.....+ ..+++.+|+.+.....+... +. ..
T Consensus 223 ~~i~i~dl~~G~~~~l~---~~~~~~~~-~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~--~~ 289 (429)
T PRK03629 223 SALVIQTLANGAVRQVA---SFPRHNGA-PAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS--NN 289 (429)
T ss_pred cEEEEEECCCCCeEEcc---CCCCCcCC-eEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC--Cc
Confidence 45999999888766664 23222111 1222233 5655433221 23699999998887766431 11 11
Q ss_pred ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEE
Q 010847 188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLN 267 (499)
Q Consensus 188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d 267 (499)
.......++..++|...... ...+|.+|+.+..-..+...+ .........-+++.+++.+... ...+++++|
T Consensus 290 ~~~~wSPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~d 361 (429)
T PRK03629 290 TEPTWFPDSQNLAYTSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNG--GQQHIAKQD 361 (429)
T ss_pred CceEECCCCCEEEEEeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccC--CCceEEEEE
Confidence 12222234433444322111 247999999887766653211 1111112222344444433222 134689999
Q ss_pred CCCCceEEecc
Q 010847 268 MTKLAWSILTS 278 (499)
Q Consensus 268 ~~~~~W~~l~~ 278 (499)
+.++.+..+..
T Consensus 362 l~~g~~~~Lt~ 372 (429)
T PRK03629 362 LATGGVQVLTD 372 (429)
T ss_pred CCCCCeEEeCC
Confidence 99998887763
No 158
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.42 E-value=1.2 Score=42.98 Aligned_cols=9 Identities=11% Similarity=0.279 Sum_probs=3.4
Q ss_pred HHHHHHHhH
Q 010847 462 EVQILRQQK 470 (499)
Q Consensus 462 e~~~~~~~~ 470 (499)
++.|+.++.
T Consensus 279 k~~qy~~Ee 287 (552)
T KOG2129|consen 279 KLMQYRAEE 287 (552)
T ss_pred HHHHHHHHH
Confidence 333333333
No 159
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.29 E-value=2.3 Score=39.40 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhcc
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNST 417 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (499)
+.++++..+.....+.+.......|..+....+..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeee 48 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEE 48 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333444444444443333
No 160
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.28 E-value=0.87 Score=49.98 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHhhccchHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847 403 ENSRFREKIDEVNSTHSEL-SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~ 471 (499)
+...++.++++++.++.+. .+-+...+.+.+..+.++..++.++.++++++..+...+.++.+++++.+
T Consensus 317 ~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAA 386 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHH
Confidence 3445555555555544332 22223334455555566666666666666665555544444444444444
No 161
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=92.20 E-value=1.9 Score=41.30 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=15.9
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHHHHhhh
Q 010847 406 RFREKIDEVNSTHSELSKELSSVQGQLVAERS 437 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (499)
.|+..|+..-+++.+++++..+.++.++.-++
T Consensus 289 ~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe 320 (442)
T PF06637_consen 289 SLRAGIERVARENSDLQRQKLEAEQGLQASQE 320 (442)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444444443333
No 162
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.16 E-value=3.5 Score=38.01 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=23.6
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
..+...+.......+..+.+..+...++...+|...++.++.+++.+|..+
T Consensus 103 ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 103 EAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 333333333444444444444455555555555555555555544444433
No 163
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.16 E-value=3.7 Score=38.74 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=23.8
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
...+.++..+..++.....++...++.+..|..++.+++++++..-
T Consensus 209 ~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~ 254 (306)
T PF04849_consen 209 SEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLA 254 (306)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555455555555555555555555555554443
No 164
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=92.16 E-value=9.2 Score=34.98 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=106.2
Q ss_pred EEcCCCCCcccCcEEEEEcCC-CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcc-cCCCCCCCceE
Q 010847 34 IVGGSRNGRFLSDVQVFDLRS-LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGG-HYKKSSDSMIV 111 (499)
Q Consensus 34 ~~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG-~~~~~~~~~~~ 111 (499)
+.|-..+-..+.-.|+-.... ++|+...-+.+. ++..|...-.+.++-+++|+||+.=- .+-........
T Consensus 33 M~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~--------H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~km~~~ 104 (367)
T PF12217_consen 33 MAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDL--------HPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNKMVRA 104 (367)
T ss_dssp EEESSSSSTT-EEEEEEESSTTSS----EESS-----------TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--EEEE
T ss_pred ccccccCccceEEEEEEecCCCCcccCchhhhhc--------CCCCCccceeeeeeeeecceeeEEEeehhhhhhhhhhh
Confidence 444444444444455555543 578776554432 11222223345567788999997632 11111113334
Q ss_pred EEEE---CCCCcEEEeecCCCCCC-------CCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEe------
Q 010847 112 RFID---LETNLCGVMETSGKVPV-------ARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV------ 175 (499)
Q Consensus 112 ~~yd---~~t~~W~~~~~~g~~p~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~------ 175 (499)
..|+ ...+.|..-... ..|. ...-|+.+.+++.-|.+|=.+++-. -.++=.+-. ++.|...
T Consensus 105 ~Lw~RpMF~~spW~~teL~-~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~s-PRe~G~~yf-s~~~~sp~~~vrr 181 (367)
T PF12217_consen 105 ELWSRPMFHDSPWRITELG-TIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVS-PRELGFLYF-SDAFASPGVFVRR 181 (367)
T ss_dssp EEEEEE-STTS--EEEEEE-S-TT--------SEEEEEEE-SSS-EEEEEEE-SSS-S-EEEEEEE-TTTTT-TT--EEE
T ss_pred hhhcccccccCCceeeecc-cccccccccceeeeeeeeeEecCCceeEEeccCCCC-cceeeEEEe-cccccCCcceeee
Confidence 4444 567888764421 2333 3455778888887777763332211 112211111 1112111
Q ss_pred eecCCCCCCCccceEEEEcCcEEEEEcC-CCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCC
Q 010847 176 EVTQTPPAPRYDHSAALHANRYLIVFGG-CSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGG 254 (499)
Q Consensus 176 ~~~~~~p~~r~~~~~~~~~~~~l~v~GG-~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~ 254 (499)
......-...+..++-.+ ++.||+.-- ......-..+++-+.....|+.+..+ -..-....-.+.+++.||+||--
T Consensus 182 ~i~sey~~~AsEPCvkyY-~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 182 IIPSEYERNASEPCVKYY-DGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp E--GGG-TTEEEEEEEEE-TTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEEEEE-
T ss_pred echhhhccccccchhhhh-CCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEEEecc
Confidence 100111112223333344 666887763 33334445677877777889987431 11112222356779999999953
Q ss_pred CC---------CCC----cceEEEE-------ECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCC
Q 010847 255 DN---------NNG----CQETIVL-------NMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYN 310 (499)
Q Consensus 255 ~~---------~~~----~~~~~~~-------d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~ 310 (499)
.. ++. ....+.. ++..-+|..+.+---.......+....++++.++-..++|||.+
T Consensus 259 RA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED 334 (367)
T PF12217_consen 259 RAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGED 334 (367)
T ss_dssp SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-
T ss_pred ccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCcc
Confidence 11 111 1122222 33445565554321111112233445566666655568899975
No 165
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.11 E-value=2.2 Score=39.45 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=4.0
Q ss_pred hhhhhHHHHHH
Q 010847 403 ENSRFREKIDE 413 (499)
Q Consensus 403 ~~~~l~~~~~~ 413 (499)
+..+.+..+..
T Consensus 20 e~~~a~~~L~e 30 (246)
T PF00769_consen 20 EMRRAQEALEE 30 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 166
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.07 E-value=14 Score=37.03 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=78.3
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 187 (499)
..++++|+.++.-..+. ..+..... ....-+ ..|++...... ..+++.+|+.+.....+..... ....
T Consensus 214 ~~i~v~d~~~g~~~~~~---~~~~~~~~-~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA---SFPGMNGA-PAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDTE 282 (417)
T ss_pred cEEEEEECCCCCEEEee---cCCCCccc-eEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCCC
Confidence 46999999998766665 22222222 112223 35665533221 3579999999887766643211 1111
Q ss_pred ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEE-EECCEEEEEeCCCCCCCcceEEEE
Q 010847 188 HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI-TIDENWYIVGGGDNNNGCQETIVL 266 (499)
Q Consensus 188 ~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~ 266 (499)
. ...-++..|++.....+ ...+|.+|+.+..+..+...+ ......+ .-+++.+++..... ....++++
T Consensus 283 ~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~ 351 (417)
T TIGR02800 283 P-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIAVM 351 (417)
T ss_pred E-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEEEE
Confidence 1 11113444444433222 247999999888877764211 1111222 22445555544322 23478999
Q ss_pred ECCCCceEEecc
Q 010847 267 NMTKLAWSILTS 278 (499)
Q Consensus 267 d~~~~~W~~l~~ 278 (499)
|+.+..+..+..
T Consensus 352 d~~~~~~~~l~~ 363 (417)
T TIGR02800 352 DLDGGGERVLTD 363 (417)
T ss_pred eCCCCCeEEccC
Confidence 998877766643
No 167
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.07 E-value=2.8 Score=36.35 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 010847 459 IENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~ 477 (499)
.+.++.++++++.+|+.+.
T Consensus 166 aqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 166 AQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555544
No 168
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=92.00 E-value=3.3 Score=41.72 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHH-HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccc-ccCCCceee
Q 010847 436 RSRCFKLEAQIAE-LQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQ-TQGSGGVWR 493 (499)
Q Consensus 436 ~~~~~~~~~~~~e-~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q-~q~~~~~~~ 493 (499)
++..+++++++++ ..+..++...+.+++.+++...+++.++...+++.. -.+.+|.||
T Consensus 138 ~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wG 197 (448)
T COG1322 138 REVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWG 197 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHH
Confidence 4455555555555 444455555666666666666666666644333221 277889987
No 169
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.94 E-value=23 Score=39.17 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=34.0
Q ss_pred CCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECC
Q 010847 92 GTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLE 168 (499)
Q Consensus 92 ~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~ 168 (499)
++.+++.||.++ .+.+||+.++.-...- ... ....++.+ ++.+++.|+.+ +.+.+||+.
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~~~---~~~---~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIGTI---KTK---ANICCVQFPSESGRSLAFGSAD------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEEEE---ecC---CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECC
Confidence 456777777543 3888888765432111 111 11222222 35677777653 368999986
Q ss_pred CC
Q 010847 169 TM 170 (499)
Q Consensus 169 t~ 170 (499)
+.
T Consensus 649 ~~ 650 (793)
T PLN00181 649 NP 650 (793)
T ss_pred CC
Confidence 54
No 170
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.92 E-value=4.9 Score=31.26 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 421 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
++..++.++.+......++.+++.++.++.+.+..
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566666666677777777777777666544
No 171
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.89 E-value=1.6 Score=45.41 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847 424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~ 471 (499)
.+.+.+.++..++.++..++.++.++++++..+...+.++.+++++.+
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~ 365 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYE 365 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 344445555555555666666666666665554445555555555444
No 172
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.86 E-value=6.8 Score=33.35 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 010847 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 461 (499)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 461 (499)
...++-++...++++..|..+-.++++.|+.+...-+
T Consensus 86 A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 86 AHELQVRLAMLREREKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666665555556665555554333
No 173
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.85 E-value=3.8 Score=36.12 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=26.3
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
...++..+.....+++..+.+++..+.+.+.+++++..++.++.+++..+..
T Consensus 54 ~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 54 IQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELAC 105 (202)
T ss_pred HHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence 3334444444444444444555555555555555555556555555555544
No 174
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.80 E-value=2.2 Score=38.43 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 458 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 458 (499)
+...++.|.++.+++=....+ ..+.+|..++.-.+...+++....+++-..++++.+.++-++..+--++++|++.++
T Consensus 215 LMAKCR~L~qENeElG~q~s~--Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~ 292 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASE--GRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRK 292 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhc--ccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 444455565555554333222 355667777777777777777777777777777777777777777777777665554
No 175
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.69 E-value=1.7 Score=46.15 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHH
Q 010847 381 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 442 (499)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (499)
.++..++.+.+.....+...+.+..+|.....++....+..+.+...++.++...+.|+..+
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl 95 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL 95 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555556666666666665555555555555555555555444433
No 176
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=91.60 E-value=5.3 Score=31.05 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=22.9
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
....|...++..+....++.++..+++..+..++..-....+.+.+++.++.++
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444333
No 177
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.57 E-value=1.4 Score=42.71 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 010847 461 NEVQILRQQKSAFEQEME 478 (499)
Q Consensus 461 ~e~~~~~~~~~~~~~~~~ 478 (499)
+|+++++.+++.-|.+++
T Consensus 309 kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555554
No 178
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=2.2 Score=47.00 Aligned_cols=26 Identities=15% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 458 TIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
+++.++.++.++++.+++++++....
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~ 469 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDS 469 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555444333
No 179
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.55 E-value=2.4 Score=30.79 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=8.7
Q ss_pred hhhhHHHHHHhhccchHHHHH
Q 010847 404 NSRFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~ 424 (499)
+.-|+.++++.+.++..+.++
T Consensus 20 I~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=91.52 E-value=11 Score=34.33 Aligned_cols=91 Identities=21% Similarity=0.119 Sum_probs=51.3
Q ss_pred CceEEeeeCcccccCccccCCCCCCCCCccce-eEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCC
Q 010847 55 LAWSNLRLETELDADKTEDSGLLEVLPPMSDH-CMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVA 133 (499)
Q Consensus 55 ~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~ 133 (499)
-.|+..+|+.. +..+.|-.+. .+..-.|.|+..||. ..+|..|+.+++....- .-..
T Consensus 99 ~lwe~~~P~~~-----------~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~----rGHt 156 (325)
T KOG0649|consen 99 RLWEVKIPMQV-----------DAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREY----RGHT 156 (325)
T ss_pred hhhhhcCcccc-----------CcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEE----cCCc
Confidence 35777777653 2233443333 233357899999974 34899999999876653 1112
Q ss_pred CcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeE
Q 010847 134 RGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWD 173 (499)
Q Consensus 134 r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~ 173 (499)
-+-|+++.-+. -=++-|+.++ .+.++|..|.+-.
T Consensus 157 DYvH~vv~R~~~~qilsG~EDG------tvRvWd~kt~k~v 191 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDG------TVRVWDTKTQKHV 191 (325)
T ss_pred ceeeeeeecccCcceeecCCCc------cEEEEecccccee
Confidence 23344444332 2334455443 4677787776643
No 181
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=91.51 E-value=4.3 Score=36.94 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=24.9
Q ss_pred HHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHH
Q 010847 398 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLE 443 (499)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (499)
+....+.++++.++........++...++..+.+++..++|.+.|+
T Consensus 115 q~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 115 QAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555555555555555555555555556665555555553
No 182
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.48 E-value=12 Score=34.80 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=37.8
Q ss_pred CCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC--CEEEEEeCCCCCCCcceEEEEECCCCceEEecc
Q 010847 210 FNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID--ENWYIVGGGDNNNGCQETIVLNMTKLAWSILTS 278 (499)
Q Consensus 210 ~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~ 278 (499)
...+++||+++.+|.+.. +|......-...++ +++++. .-..+.+.+||+.+.+.+.++.
T Consensus 253 ~g~l~rfdPs~~sW~eyp----LPgs~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYP----LPGSKARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred CceeeEeCcccccceeee----CCCCCCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence 456899999999999863 33222222223333 345542 1124568899999999988754
No 183
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=91.48 E-value=11 Score=34.46 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=82.4
Q ss_pred CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847 93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVHFLDLETMT 171 (499)
Q Consensus 93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 171 (499)
+..++.|+.+ ..+.+||..++.....- ... ...-.++... ++.+++.|+. ...+.+||+.+.+
T Consensus 63 ~~~l~~~~~~------~~i~i~~~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~ 126 (289)
T cd00200 63 GTYLASGSSD------KTIRLWDLETGECVRTL---TGH-TSYVSSVAFSPDGRILSSSSR------DKTIKVWDVETGK 126 (289)
T ss_pred CCEEEEEcCC------CeEEEEEcCcccceEEE---ecc-CCcEEEEEEcCCCCEEEEecC------CCeEEEEECCCcE
Confidence 3455566542 34888998875322221 111 1111222222 2356666652 2468899987654
Q ss_pred eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC-CEEEE
Q 010847 172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI 250 (499)
Q Consensus 172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v 250 (499)
-...-. .....-.++....++.+++.|..+ +.+.+||+.+..-...- . .....-.++.... +..++
T Consensus 127 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 127 CLTTLR----GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKCVATL--T--GHTGEVNSVAFSPDGEKLL 193 (289)
T ss_pred EEEEec----cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEccccccceeE--e--cCccccceEEECCCcCEEE
Confidence 322211 111111222223334344444322 36889998654321110 0 1111112233333 33555
Q ss_pred EeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCC
Q 010847 251 VGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKP 324 (499)
Q Consensus 251 ~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 324 (499)
+++.+ ..+.+||+.+..... ..... ......+....+..+++.++.++ .+.+|++..
T Consensus 194 ~~~~~-----~~i~i~d~~~~~~~~--~~~~~------~~~i~~~~~~~~~~~~~~~~~~~----~i~i~~~~~ 250 (289)
T cd00200 194 SSSSD-----GTIKLWDLSTGKCLG--TLRGH------ENGVNSVAFSPDGYLLASGSEDG----TIRVWDLRT 250 (289)
T ss_pred EecCC-----CcEEEEECCCCceec--chhhc------CCceEEEEEcCCCcEEEEEcCCC----cEEEEEcCC
Confidence 65542 257888887643322 11110 01122233333345566565343 677788754
No 184
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.44 E-value=4.2 Score=39.28 Aligned_cols=72 Identities=25% Similarity=0.404 Sum_probs=37.3
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHHHHHHH
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--------~~~~e~~~~~~~~~~~~~~~~ 478 (499)
-...+...+.++.+....++.++.++..++.+...|+.++.+++.++.... .++.++.++..+.+....+.+
T Consensus 207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~ 286 (312)
T PF00038_consen 207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQ 286 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555666555555666666655554443322 455555555555554444433
No 185
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.44 E-value=3.2 Score=39.46 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=26.0
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010847 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 454 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 454 (499)
+.-|+..+++.++.+.+..+++.+...+++.+++....++.++.+++.+|.
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444555555555555555544444443
No 186
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.42 E-value=2.8 Score=46.03 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=12.1
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHH
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQL 432 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (499)
+..++++++.+++.+++++.+++..+
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~ 471 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELY 471 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555444444433
No 187
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.35 E-value=6.1 Score=31.91 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=14.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHH
Q 010847 435 ERSRCFKLEAQIAELQKMLESSQTIE 460 (499)
Q Consensus 435 ~~~~~~~~~~~~~e~~~~l~~~~~~~ 460 (499)
...+...++.++++++++.+.+-++-
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666655555443
No 188
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.31 E-value=5.2 Score=37.15 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+..+......+..++++...++.-.+++|+.+|
T Consensus 185 l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 185 LNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444455544
No 189
>PRK04043 tolB translocation protein TolB; Provisional
Probab=91.27 E-value=18 Score=36.56 Aligned_cols=185 Identities=11% Similarity=0.040 Sum_probs=97.7
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 187 (499)
..+|++|+.++.=+.+. ..+. ........-++ +|++.-...+ ..++|.+|+.+..++.+... + . ..
T Consensus 213 ~~Iyv~dl~tg~~~~lt---~~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~---~-~-~d 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIA---SSQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNY---P-G-ID 279 (419)
T ss_pred CEEEEEECCCCcEEEEe---cCCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccC---C-C-cc
Confidence 36999999888766665 2221 11111222233 5655433221 35899999999998887532 1 1 11
Q ss_pred ceEEEEc-CcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCC---CcceE
Q 010847 188 HSAALHA-NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNN---GCQET 263 (499)
Q Consensus 188 ~~~~~~~-~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~---~~~~~ 263 (499)
....... ++.|++.....+ ...||++|+.++..+.+...+. +......-++.++......... ...++
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I 351 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNL 351 (419)
T ss_pred CccEECCCCCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEE
Confidence 1122222 445665543322 3589999999998877643221 2222222233444443322111 23589
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC
Q 010847 264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR 325 (499)
Q Consensus 264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~ 325 (499)
+++|+.++.+..|..... ........++. .|+..... .....++.++++.+
T Consensus 352 ~v~d~~~g~~~~LT~~~~--------~~~p~~SPDG~-~I~f~~~~--~~~~~L~~~~l~g~ 402 (419)
T PRK04043 352 YLISTNSDYIRRLTANGV--------NQFPRFSSDGG-SIMFIKYL--GNQSALGIIRLNYN 402 (419)
T ss_pred EEEECCCCCeEECCCCCC--------cCCeEECCCCC-EEEEEEcc--CCcEEEEEEecCCC
Confidence 999999999888765311 11123334443 33333322 22346888887654
No 190
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.25 E-value=3 Score=44.54 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 457 QTIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 457 ~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
..|+.|++-+.++.+.++.++|=+.+..+.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmee 357 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEE 357 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367777777777777777777644433333
No 191
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.24 E-value=7.3 Score=31.94 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=56.6
Q ss_pred EEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEE-C
Q 010847 89 VKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD-L 167 (499)
Q Consensus 89 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd-~ 167 (499)
+.++|-||..+-. .......+..||..+.+|+.+..............++.++|+|-++.-........=++|+++ .
T Consensus 2 icinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 2 ICINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred EEECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 4568888877665 112256699999999999988631112345566677788998877654332211234688884 5
Q ss_pred CCCeeEEeee
Q 010847 168 ETMTWDAVEV 177 (499)
Q Consensus 168 ~t~~W~~~~~ 177 (499)
....|++...
T Consensus 80 ~k~~Wsk~~~ 89 (129)
T PF08268_consen 80 EKQEWSKKHI 89 (129)
T ss_pred ccceEEEEEE
Confidence 5678997755
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=91.22 E-value=11 Score=34.13 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCcEEEeec--CCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEc
Q 010847 118 TNLCGVMET--SGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHA 194 (499)
Q Consensus 118 t~~W~~~~~--~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~ 194 (499)
...|+...+ .+..+.|-.+..... -.|.|+..||- ..+|+.|+++++.+..-- | ..-+-|+.+.-+
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~r-G---HtDYvH~vv~R~ 166 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYR-G---HTDYVHSVVGRN 166 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEc-C---Ccceeeeeeecc
Confidence 445776653 223444444443333 46788888873 258999999999876542 2 234455555533
Q ss_pred CcEEEEEcCCCCCCCCCcEEEEECCCCceEec-cc--CCCCCCcCccc--EEEEECCEEEEEeCCCCCCCcceEEEEECC
Q 010847 195 NRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP-EI--KGDLVTGRAGH--AGITIDENWYIVGGGDNNNGCQETIVLNMT 269 (499)
Q Consensus 195 ~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~-~~--~~~~p~~r~~~--~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~ 269 (499)
..-=++-|+-++ .+-++|.+|.+-..+ +. ...+..|-.+- .+...+..++|+||+- .+-++++.
T Consensus 167 ~~~qilsG~EDG-----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLr 235 (325)
T KOG0649|consen 167 ANGQILSGAEDG-----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLR 235 (325)
T ss_pred cCcceeecCCCc-----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEecc
Confidence 222344455443 467778877765442 11 11122222222 3444566788888853 24455665
Q ss_pred CCceEEeccCC
Q 010847 270 KLAWSILTSVK 280 (499)
Q Consensus 270 ~~~W~~l~~~~ 280 (499)
+.+-+.+-++|
T Consensus 236 sse~t~vfpip 246 (325)
T KOG0649|consen 236 SSESTCVFPIP 246 (325)
T ss_pred CCCceEEEecc
Confidence 55555554443
No 193
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=91.19 E-value=2.7 Score=41.42 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=7.4
Q ss_pred hHHHHHHhhccchHHHHHHH
Q 010847 407 FREKIDEVNSTHSELSKELS 426 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~ 426 (499)
+...++.+++-+..-.+.|+
T Consensus 388 ~~k~lqnLqe~la~tqk~Lq 407 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQ 407 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 194
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.19 E-value=4.6 Score=39.88 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHhHH
Q 010847 440 FKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 440 ~~~~~~~~e~~~~l~~~~ 457 (499)
.+++.++...+++++++.
T Consensus 213 ~~l~~~l~~~q~~l~eL~ 230 (420)
T COG4942 213 AQLNSELSADQKKLEELR 230 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 195
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.19 E-value=2.4 Score=45.62 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=5.5
Q ss_pred EEEEcccCCCC
Q 010847 95 LLILGGHYKKS 105 (499)
Q Consensus 95 iyv~GG~~~~~ 105 (499)
+.+++|.++.+
T Consensus 30 ~~~i~G~Ng~G 40 (650)
T TIGR03185 30 IILIGGLNGAG 40 (650)
T ss_pred EEEEECCCCCC
Confidence 45555554444
No 196
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.16 E-value=5.7 Score=38.32 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHH
Q 010847 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~ 478 (499)
+...+..++.++.++..++.+...++.++..++ .+..+.+.++..+..++.++.
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~ 272 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELA 272 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 333333333333333333333344444443333 333444444444444444433
No 197
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.11 E-value=1.7 Score=42.04 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.1
Q ss_pred hHHHHHHHHHH
Q 010847 419 SELSKELSSVQ 429 (499)
Q Consensus 419 ~~~~~~~~~~~ 429 (499)
+.+.++.-++.
T Consensus 182 eQLRre~V~le 192 (552)
T KOG2129|consen 182 EQLRREAVQLE 192 (552)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 198
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.10 E-value=3.6 Score=39.42 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhh
Q 010847 401 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR 438 (499)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (499)
+.+...++..++..+.++++..+++.+.+..++..+..
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~ 106 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSR 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444444444444433
No 199
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.06 E-value=13 Score=34.52 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=90.0
Q ss_pred CCEEEEEcccCCCCCCCceEEEEEC-----CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEE
Q 010847 92 GTKLLILGGHYKKSSDSMIVRFIDL-----ETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD 166 (499)
Q Consensus 92 ~~~iyv~GG~~~~~~~~~~~~~yd~-----~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd 166 (499)
.+++|++.|..+. .+..|.. ..+.....- .+|.+-.|...++.++.+|+--. .++.|..||
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~---~Lp~~~~GtG~vVYngslYY~~~------~s~~Ivkyd 95 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTY---KLPYPWQGTGHVVYNGSLYYNKY------NSRNIVKYD 95 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEE---EEeceeccCCeEEECCcEEEEec------CCceEEEEE
Confidence 4679999886654 3666642 222333332 57777788888889999988643 367899999
Q ss_pred CCCCeeE---EeeecCC---CCCCCcc---ceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc----eEecccCCCCC
Q 010847 167 LETMTWD---AVEVTQT---PPAPRYD---HSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE----WSQPEIKGDLV 233 (499)
Q Consensus 167 ~~t~~W~---~~~~~~~---~p~~r~~---~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~----W~~~~~~~~~p 233 (499)
+.+..-. .++-.+. .|-...+ .-.++..++ |.++=........-.+-.+|+.+.. |.. ..+
T Consensus 96 L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G-LWvIYat~~~~g~ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 96 LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG-LWVIYATEDNNGNIVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC-EEEEEecCCCCCcEEEEeeCcccCceEEEEEe-----ccC
Confidence 9988655 2321111 1111111 223333455 6666444332212235566666543 543 133
Q ss_pred CcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEE
Q 010847 234 TGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSI 275 (499)
Q Consensus 234 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~ 275 (499)
.+..+. +.++-+.||++-..+... ..-.+.||+.++.=..
T Consensus 170 k~~~~n-aFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 170 KRSAGN-AFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED 209 (250)
T ss_pred chhhcc-eeeEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence 333332 444457788776544332 3345799998876543
No 200
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.02 E-value=3 Score=49.37 Aligned_cols=20 Identities=20% Similarity=0.347 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 010847 459 IENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~ 478 (499)
++++...+..+++.+.++++
T Consensus 1123 ~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1123 AERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 201
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.96 E-value=2 Score=39.59 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=7.3
Q ss_pred HHHHhHHHHHHHHHHh
Q 010847 465 ILRQQKSAFEQEMERA 480 (499)
Q Consensus 465 ~~~~~~~~~~~~~~~~ 480 (499)
...+++..++..++++
T Consensus 117 E~~rkl~~~E~~Le~a 132 (237)
T PF00261_consen 117 EVERKLKVLEQELERA 132 (237)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445554443
No 202
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.84 E-value=14 Score=34.63 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=68.8
Q ss_pred cCcEEEEEcCCCc----eEEeeeCcccccCccccCCCCCCCCCcccee-EEEE---CCEEEEEcccCCCCCCCceEEEEE
Q 010847 44 LSDVQVFDLRSLA----WSNLRLETELDADKTEDSGLLEVLPPMSDHC-MVKW---GTKLLILGGHYKKSSDSMIVRFID 115 (499)
Q Consensus 44 ~~~~~~yd~~t~~----W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s-~~~~---~~~iyv~GG~~~~~~~~~~~~~yd 115 (499)
++.|+.||..+++ |+.---- +..-.+-. -..+ ++.|++.=+ +++. .--+|..|
T Consensus 77 YSHVH~yd~e~~~VrLLWkesih~----------------~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~--nLGvy~ld 137 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESIHD----------------KTKWAGEVSDILYDPYEDRLLLARA-DGHA--NLGVYSLD 137 (339)
T ss_pred cceEEEEEcCCCeEEEEEecccCC----------------ccccccchhheeeCCCcCEEEEEec-CCcc--eeeeEEEc
Confidence 5679999998887 5442211 11112221 1222 577777643 2222 33488899
Q ss_pred CCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCee--EEeeec----CCCCCCCccce
Q 010847 116 LETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTW--DAVEVT----QTPPAPRYDHS 189 (499)
Q Consensus 116 ~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~----~~~p~~r~~~~ 189 (499)
..++.-+.+. .-|... .+...+..+|-+ ..-..-.+.+.|||+.+++| ...... |.....+....
T Consensus 138 r~~g~~~~L~---~~ps~K---G~~~~D~a~F~i---~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~ 208 (339)
T PF09910_consen 138 RRTGKAEKLS---SNPSLK---GTLVHDYACFGI---NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGA 208 (339)
T ss_pred ccCCceeecc---CCCCcC---ceEeeeeEEEec---cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeecccc
Confidence 9999888887 444331 122223333322 22222367899999999999 433321 12222333444
Q ss_pred EEEEcCcEEEEEcC
Q 010847 190 AALHANRYLIVFGG 203 (499)
Q Consensus 190 ~~~~~~~~l~v~GG 203 (499)
++...+..+..++|
T Consensus 209 ~~s~ynR~faF~rG 222 (339)
T PF09910_consen 209 MASAYNRLFAFVRG 222 (339)
T ss_pred EEEEeeeEEEEEec
Confidence 55554553333343
No 203
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.79 E-value=2 Score=46.21 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHH
Q 010847 410 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~ 478 (499)
++++++.++.+.+.+.+.+.++....+.++.+++.++.+++++++..- .+.++.+++.+++..++.+++
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333444444433333332221 233333444444444444433
No 204
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.65 E-value=0.93 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHH
Q 010847 436 RSRCFKLEAQIAELQKMLESSQT 458 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~~ 458 (499)
.++.++++.+++++..+|+.+.+
T Consensus 162 eer~~kl~~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 162 EERTRKLEEQLEELNAELQRARQ 184 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544443
No 205
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.32 E-value=16 Score=34.29 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=69.2
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
.+|+.++. .+.+.+||+.++.....-+.. ..++ ..+....++.+|+.++. ...
T Consensus 44 ~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~---------------~~~~-~~~~~~~g~~l~~~~~~------~~~ 96 (300)
T TIGR03866 44 LLYVCASD-----SDTIQVIDLATGEVIGTLPSG---------------PDPE-LFALHPNGKILYIANED------DNL 96 (300)
T ss_pred EEEEEECC-----CCeEEEEECCCCcEEEeccCC---------------CCcc-EEEECCCCCEEEEEcCC------CCe
Confidence 56666653 235888999988764421111 0111 11111224567666542 234
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccce
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHS 189 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~ 189 (499)
+.+||+.+..-... .+......+++. -++.+++++..+ .+.++.||..+..-......+..| ..
T Consensus 97 l~~~d~~~~~~~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~-----~~ 161 (300)
T TIGR03866 97 VTVIDIETRKVLAE-----IPVGVEPEGMAVSPDGKIVVNTSET-----TNMAHFIDTKTYEIVDNVLVDQRP-----RF 161 (300)
T ss_pred EEEEECCCCeEEeE-----eeCCCCcceEEECCCCCEEEEEecC-----CCeEEEEeCCCCeEEEEEEcCCCc-----cE
Confidence 99999987642211 111111122222 355666665432 224667787765432221111111 12
Q ss_pred EEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCce
Q 010847 190 AALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEW 223 (499)
Q Consensus 190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W 223 (499)
+....++..+++++... +.+..||+.+.+.
T Consensus 162 ~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 162 AEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 22222443444443221 3689999987653
No 206
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.27 E-value=3.3 Score=47.83 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=3.5
Q ss_pred ECCEEEE
Q 010847 244 IDENWYI 250 (499)
Q Consensus 244 ~~~~l~v 250 (499)
+..+++.
T Consensus 100 v~Rri~r 106 (1163)
T COG1196 100 VTRRIYR 106 (1163)
T ss_pred EEEEEEE
Confidence 3445555
No 207
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=90.26 E-value=3.9 Score=44.70 Aligned_cols=8 Identities=25% Similarity=-0.155 Sum_probs=3.2
Q ss_pred CCceeeee
Q 010847 488 SGGVWRWI 495 (499)
Q Consensus 488 ~~~~~~~~ 495 (499)
.-|-.=||
T Consensus 626 ~~Gd~V~v 633 (771)
T TIGR01069 626 KIGDKVRI 633 (771)
T ss_pred CCCCEEEE
Confidence 33443343
No 208
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.24 E-value=6 Score=38.78 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=23.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSEL 421 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 421 (499)
++-+..+++++.-+..++..+...+.+..++..++...-..++..
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR 260 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR 260 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666665555555555555544444444433333
No 209
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.23 E-value=2.8 Score=39.95 Aligned_cols=13 Identities=8% Similarity=0.350 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhHH
Q 010847 459 IENEVQILRQQKS 471 (499)
Q Consensus 459 ~~~e~~~~~~~~~ 471 (499)
+.++.++++...+
T Consensus 138 ~~~q~~qLe~d~q 150 (319)
T PF09789_consen 138 LREQIEQLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 210
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.08 E-value=3.3 Score=45.54 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=9.0
Q ss_pred ccCcEEEEEcCC-CceEEee
Q 010847 43 FLSDVQVFDLRS-LAWSNLR 61 (499)
Q Consensus 43 ~~~~~~~yd~~t-~~W~~~~ 61 (499)
.++-+..||+.+ .-|..+.
T Consensus 613 ~Ydv~ir~~~~~~~~wen~~ 632 (1758)
T KOG0994|consen 613 EYDVLIRYDPRTPKLWENAK 632 (1758)
T ss_pred ccchheeccCCCcchhhhhe
Confidence 344455556554 2354443
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=90.07 E-value=23 Score=35.85 Aligned_cols=184 Identities=10% Similarity=0.003 Sum_probs=89.9
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.+++=..+..... .....+....+++|++.....+ ...+|.+|+.++....+
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g----------------~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~l 279 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKG----------------SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRL 279 (427)
T ss_pred cEEEEEECCCCCEEEeecCCC----------------CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEEC
Confidence 469999999886555432210 0111111122445655443322 34599999988776665
Q ss_pred ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847 125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG 202 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G 202 (499)
. ..+ .........-++ .|++..... ....+|.++..+.....+...+ ......... +++.|++..
T Consensus 280 t---~~~-~~~~~~~wSpDG~~l~f~s~~~----g~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 280 T---QSS-GIDTEPFFSPDGRSIYFTSDRG----GAPQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred C---CCC-CCCcCeEEcCCCCEEEEEecCC----CCcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEE
Confidence 4 111 111111222244 455432211 1346899998887777665322 111122222 344455443
Q ss_pred CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCC
Q 010847 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKL 271 (499)
Q Consensus 203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 271 (499)
..++ ...++++|+.++....+..... ...-...-+++.+++..... ....++.++....
T Consensus 347 ~~~g---~~~I~v~d~~~g~~~~lt~~~~-----~~~p~~spdg~~l~~~~~~~--g~~~l~~~~~~g~ 405 (427)
T PRK02889 347 RVGG---AFKLYVQDLATGQVTALTDTTR-----DESPSFAPNGRYILYATQQG--GRSVLAAVSSDGR 405 (427)
T ss_pred ccCC---cEEEEEEECCCCCeEEccCCCC-----ccCceECCCCCEEEEEEecC--CCEEEEEEECCCC
Confidence 3221 1369999999888777642111 11112222455555544322 2345777777443
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=89.79 E-value=25 Score=35.69 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=73.3
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCcc
Q 010847 109 MIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYD 187 (499)
Q Consensus 109 ~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~ 187 (499)
..++++|+.++.=..+. ..+... ......-+ ++|++....+. ..++|.+|+.+.....+... . ....
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g~~-~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKGSN-SAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCCCc-cceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCCc
Confidence 45999999988765554 222111 11122223 35655433222 35799999887776655321 1 1111
Q ss_pred ceEEEEcCc-EEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccE-EEEECCEEEEEeCCCCCCCcceEEE
Q 010847 188 HSAALHANR-YLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA-GITIDENWYIVGGGDNNNGCQETIV 265 (499)
Q Consensus 188 ~~~~~~~~~-~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~ 265 (499)
......|+ .|++.....+ ...+|.++..+...+.+...+ .+... ...-+++.+++..... ....+++
T Consensus 288 -~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~--g~~~I~v 356 (427)
T PRK02889 288 -EPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVG--GAFKLYV 356 (427)
T ss_pred -CeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccC--CcEEEEE
Confidence 12222344 4443322111 246899998887776663211 11111 1222344333333221 1236899
Q ss_pred EECCCCceEEec
Q 010847 266 LNMTKLAWSILT 277 (499)
Q Consensus 266 ~d~~~~~W~~l~ 277 (499)
+|+.+.....+.
T Consensus 357 ~d~~~g~~~~lt 368 (427)
T PRK02889 357 QDLATGQVTALT 368 (427)
T ss_pred EECCCCCeEEcc
Confidence 999988877664
No 213
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.74 E-value=4.1 Score=43.00 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 431 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 431 (499)
.++++.+...|++...+...+...|+.+.+.....++++++++.+++.+
T Consensus 17 a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 17 AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555566666666555555566666665555543
No 214
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=89.70 E-value=7.9 Score=33.93 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=5.7
Q ss_pred EEECC---CCCCCCC
Q 010847 319 VMRLK---PRDIPRP 330 (499)
Q Consensus 319 ~~~~~---~~~W~~~ 330 (499)
-||++ ...|...
T Consensus 39 ~Ydl~~~~~s~~~~~ 53 (195)
T PF12761_consen 39 DYDLNSSPQSRWKPS 53 (195)
T ss_pred CccccchhhcccccC
Confidence 45655 3455433
No 215
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=89.69 E-value=2.7 Score=46.12 Aligned_cols=9 Identities=22% Similarity=0.357 Sum_probs=3.2
Q ss_pred cchHHHHHH
Q 010847 417 THSELSKEL 425 (499)
Q Consensus 417 ~~~~~~~~~ 425 (499)
++.++++.+
T Consensus 1620 ~~~eL~~~~ 1628 (1758)
T KOG0994|consen 1620 QLGELETRM 1628 (1758)
T ss_pred HHHHHHHHH
Confidence 333333333
No 216
>PRK13684 Ycf48-like protein; Provisional
Probab=89.64 E-value=21 Score=34.78 Aligned_cols=163 Identities=9% Similarity=0.024 Sum_probs=78.5
Q ss_pred EEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEE-ECCCCcEEEee
Q 010847 47 VQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFI-DLETNLCGVME 125 (499)
Q Consensus 47 ~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~y-d~~t~~W~~~~ 125 (499)
++.=+=.-.+|..+.... .-..+.+....+..|+..|..+. ++.- |....+|..+.
T Consensus 154 i~~S~DgG~tW~~~~~~~-----------------~g~~~~i~~~~~g~~v~~g~~G~------i~~s~~~gg~tW~~~~ 210 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDA-----------------AGVVRNLRRSPDGKYVAVSSRGN------FYSTWEPGQTAWTPHQ 210 (334)
T ss_pred EEEECCCCCCceeCcCCC-----------------cceEEEEEECCCCeEEEEeCCce------EEEEcCCCCCeEEEee
Confidence 333333446899876431 22334444444444544443221 4432 34445799885
Q ss_pred cCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEE-C-CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEc
Q 010847 126 TSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLD-L-ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFG 202 (499)
Q Consensus 126 ~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd-~-~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~G 202 (499)
.+..+.-++++. -++.++++|..+ ...+. . .-.+|+.+.. +........++++...++.++++|
T Consensus 211 ----~~~~~~l~~i~~~~~g~~~~vg~~G--------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G 277 (334)
T PRK13684 211 ----RNSSRRLQSMGFQPDGNLWMLARGG--------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGG 277 (334)
T ss_pred ----CCCcccceeeeEcCCCCEEEEecCC--------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEc
Confidence 233344444444 356788886532 12231 2 2347987642 100011222334444455688887
Q ss_pred CCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeC
Q 010847 203 GCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGG 253 (499)
Q Consensus 203 G~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG 253 (499)
..+ .++.-.-...+|+.+......| ...+.++.. +++.|++|.
T Consensus 278 ~~G------~v~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 278 GNG------TLLVSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CCC------eEEEeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEEECC
Confidence 642 2333333446899864212222 234444544 567777765
No 217
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=89.61 E-value=2.8 Score=40.17 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHH
Q 010847 424 ELSSVQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~ 446 (499)
++.=+-+.||+++-|+++||.++
T Consensus 293 dy~fi~etLQEERyR~erLEEqL 315 (455)
T KOG3850|consen 293 DYKFIAETLQEERYRYERLEEQL 315 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555
No 218
>PTZ00420 coronin; Provisional
Probab=89.58 E-value=30 Score=36.40 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847 93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTL-VGSRLIIFGGEDRSRKLLNDVHFLDLETMT 171 (499)
Q Consensus 93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 171 (499)
..+++.||.+ ..+.++|+.++.=...- ..+. .-.++.. .++.+++.++.+ ..+.+||+.+..
T Consensus 138 ~~iLaSgS~D------gtIrIWDl~tg~~~~~i---~~~~--~V~SlswspdG~lLat~s~D------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 138 YYIMCSSGFD------SFVNIWDIENEKRAFQI---NMPK--KLSSLKWNIKGNLLSGTCVG------KHMHIIDPRKQE 200 (568)
T ss_pred CeEEEEEeCC------CeEEEEECCCCcEEEEE---ecCC--cEEEEEECCCCCEEEEEecC------CEEEEEECCCCc
Confidence 4566666653 23888898877521111 1111 1122222 256777766643 358999998764
No 219
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.52 E-value=4.2 Score=42.75 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010847 459 IENEVQILR 467 (499)
Q Consensus 459 ~~~e~~~~~ 467 (499)
|.++.+.+.
T Consensus 424 L~~e~r~lk 432 (594)
T PF05667_consen 424 LIEEYRRLK 432 (594)
T ss_pred HHHHHHHHH
Confidence 333333333
No 220
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.49 E-value=6.9 Score=38.87 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=57.0
Q ss_pred EECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCC
Q 010847 90 KWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLET 169 (499)
Q Consensus 90 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t 169 (499)
..+|+|+..|+..+. +.+||..+.. .+........|....-.+..++.++++|+-+. .+-.+|+++
T Consensus 77 R~DG~LlaaGD~sG~------V~vfD~k~r~--iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~------v~k~~d~s~ 142 (487)
T KOG0310|consen 77 RSDGRLLAAGDESGH------VKVFDMKSRV--ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDK------VVKYWDLST 142 (487)
T ss_pred ecCCeEEEccCCcCc------EEEeccccHH--HHHHHhhccCceeEEEecccCCeEEEecCCCc------eEEEEEcCC
Confidence 447999999986554 8899955521 11100011112222223346788999887442 234445555
Q ss_pred CeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847 170 MTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTN 221 (499)
Q Consensus 170 ~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~ 221 (499)
.. ......|.- ......++.. .+++|++-|||++. |-.||+.+.
T Consensus 143 a~-v~~~l~~ht-DYVR~g~~~~-~~~hivvtGsYDg~-----vrl~DtR~~ 186 (487)
T KOG0310|consen 143 AY-VQAELSGHT-DYVRCGDISP-ANDHIVVTGSYDGK-----VRLWDTRSL 186 (487)
T ss_pred cE-EEEEecCCc-ceeEeecccc-CCCeEEEecCCCce-----EEEEEeccC
Confidence 44 232322211 1111112222 25679999999854 667777665
No 221
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=89.49 E-value=30 Score=36.21 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=59.9
Q ss_pred CcEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc--
Q 010847 45 SDVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-- 120 (499)
Q Consensus 45 ~~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-- 120 (499)
+.++.+|..|++ |+.-...... .. ............+..+++||+... ...++.+|..|++
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~------~~--~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDD------VI--PVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTGKVV 143 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcc------cc--cccccccccccceEECCEEEEEcC-------CCEEEEEECCCCCEE
Confidence 368999999875 8765432110 00 000001112234666888886432 2349999998885
Q ss_pred EEEeecCCCCCCC-CcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEee
Q 010847 121 CGVMETSGKVPVA-RGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVE 176 (499)
Q Consensus 121 W~~~~~~g~~p~~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~ 176 (499)
|+.-. +..... ....+-++.++.||+-..... ......++.||..|++ |+.-.
T Consensus 144 W~~~~--~~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKN--GDYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eeccc--ccccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence 66432 122211 112234556787776432211 1124569999998874 76443
No 222
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.45 E-value=5.7 Score=27.90 Aligned_cols=11 Identities=18% Similarity=0.075 Sum_probs=4.2
Q ss_pred HHHHHHHhHHH
Q 010847 462 EVQILRQQKSA 472 (499)
Q Consensus 462 e~~~~~~~~~~ 472 (499)
+..-.+.++.+
T Consensus 61 e~~~WQerlrs 71 (79)
T COG3074 61 EQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHH
Confidence 33333433333
No 223
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.36 E-value=11 Score=35.67 Aligned_cols=10 Identities=40% Similarity=0.627 Sum_probs=4.2
Q ss_pred HHHHHHHhHH
Q 010847 462 EVQILRQQKS 471 (499)
Q Consensus 462 e~~~~~~~~~ 471 (499)
+++++..++.
T Consensus 157 ~le~Lr~EKV 166 (310)
T PF09755_consen 157 ELERLRREKV 166 (310)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 224
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.35 E-value=5.8 Score=42.48 Aligned_cols=29 Identities=28% Similarity=0.504 Sum_probs=11.0
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAE 435 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (499)
++..+.+......+.-++..++.++++..
T Consensus 429 lkek~t~l~~~h~~lL~K~~di~kQle~~ 457 (980)
T KOG0980|consen 429 LKEKYTELRQEHADLLRKYDDIQKQLESA 457 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444433
No 225
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.34 E-value=39 Score=37.41 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=52.0
Q ss_pred CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcCcCCCCCccCcEEEEECCCC
Q 010847 93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV--GSRLIIFGGEDRSRKLLNDVHFLDLETM 170 (499)
Q Consensus 93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~v~~yd~~t~ 170 (499)
+.+++.|+.+ ..+.+||..++.-...- ... ...-.+++.. ++.+++.||.+. .+.+||+.+.
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~~~---~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVTEM---KEH-EKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEEEe---cCC-CCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCCC
Confidence 4455566543 34888898876532221 111 1111222222 456777777543 4888888765
Q ss_pred ee-EEeeecCCCCCCCccceEEEE--cCcEEEEEcCCCCCCCCCcEEEEECCCC
Q 010847 171 TW-DAVEVTQTPPAPRYDHSAALH--ANRYLIVFGGCSHSIFFNDLHVLDLQTN 221 (499)
Q Consensus 171 ~W-~~~~~~~~~p~~r~~~~~~~~--~~~~l~v~GG~~~~~~~~~i~~~d~~~~ 221 (499)
.- ..+.. .....++.+ .++.++++|+.+ +.|.+||+.+.
T Consensus 609 ~~~~~~~~-------~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~ 650 (793)
T PLN00181 609 VSIGTIKT-------KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNP 650 (793)
T ss_pred cEEEEEec-------CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCC
Confidence 32 22211 111222333 245577777654 46899998654
No 226
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.33 E-value=22 Score=34.42 Aligned_cols=120 Identities=13% Similarity=0.064 Sum_probs=59.7
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEE-CCEEEEEcccCCCC---C
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKW-GTKLLILGGHYKKS---S 106 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~-~~~iyv~GG~~~~~---~ 106 (499)
++||.=..... .++.+++||..+++-.-.-+. +-.++.+..- +..+|+..-+.... .
T Consensus 4 rvyV~D~~~~~-~~~rv~viD~d~~k~lGmi~~------------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~ 64 (342)
T PF06433_consen 4 RVYVQDPVFFH-MTSRVYVIDADSGKLLGMIDT------------------GFLGNVALSPDGKTIYVAETFYSRGTRGE 64 (342)
T ss_dssp EEEEEE-GGGG-SSEEEEEEETTTTEEEEEEEE------------------ESSEEEEE-TTSSEEEEEEEEEEETTEEE
T ss_pred EEEEECCcccc-ccceEEEEECCCCcEEEEeec------------------ccCCceeECCCCCEEEEEEEEEecccccc
Confidence 45555432111 235789999988875433322 3333433322 45677655432221 1
Q ss_pred CCceEEEEECCCCc--EEEeecCC-CC-CCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCeeEE
Q 010847 107 DSMIVRFIDLETNL--CGVMETSG-KV-PVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMTWDA 174 (499)
Q Consensus 107 ~~~~~~~yd~~t~~--W~~~~~~g-~~-p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~ 174 (499)
.++.+..||+.|.. ++..-+.+ .+ -.+..+......+ ..+|++- . ....+|.+.|+...+...
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-~----TPa~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-F----TPATSVTVVDLAAKKVVG 132 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-E----SSSEEEEEEETTTTEEEE
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-c----CCCCeEEEEECCCCceee
Confidence 35679999999985 43332211 01 0111122222223 3566652 1 245678889998877643
No 227
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.33 E-value=3.3 Score=44.62 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=24.1
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (499)
.+..+++++.+.++...+.+.++++++.+..+.+.+|++++-+.+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555554433
No 228
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.26 E-value=3.6 Score=42.00 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=17.6
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847 434 AERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 434 ~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~ 471 (499)
..+.++..++.++.++++++..+...+.+...++++.+
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~ 352 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVE 352 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555444444444444444333
No 229
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.21 E-value=6.6 Score=28.61 Aligned_cols=18 Identities=6% Similarity=0.071 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQ 475 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~ 475 (499)
++..+....+.++..+.-
T Consensus 57 qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 57 HLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555544433
No 230
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.20 E-value=6.1 Score=39.03 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHH
Q 010847 426 SSVQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~ 446 (499)
+-+.+.+++++.|.+.||.++
T Consensus 247 ~~~~~~LqEEr~R~erLEeql 267 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQL 267 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 333344444444444444433
No 231
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.19 E-value=5.2 Score=42.23 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 010847 383 IDAIKEDKRV 392 (499)
Q Consensus 383 ~~~l~~~~~~ 392 (499)
+..++.....
T Consensus 301 ~~~l~d~i~~ 310 (562)
T PHA02562 301 ITKIKDKLKE 310 (562)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 232
>PRK02224 chromosome segregation protein; Provisional
Probab=89.04 E-value=4 Score=45.80 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=3.7
Q ss_pred EEEEcccCCC
Q 010847 95 LLILGGHYKK 104 (499)
Q Consensus 95 iyv~GG~~~~ 104 (499)
+.++-|.++.
T Consensus 25 ~~~i~G~Ng~ 34 (880)
T PRK02224 25 VTVIHGVNGS 34 (880)
T ss_pred eEEEECCCCC
Confidence 3333333333
No 233
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.04 E-value=23 Score=34.30 Aligned_cols=146 Identities=10% Similarity=0.045 Sum_probs=67.3
Q ss_pred EEEEEcccCCCCCCCceEEEEECCC-CcEEEeecCCCCCCCCcceEEEE-EC-CEEEEEcCcCCCCCccCcEEEEECC-C
Q 010847 94 KLLILGGHYKKSSDSMIVRFIDLET-NLCGVMETSGKVPVARGGHSVTL-VG-SRLIIFGGEDRSRKLLNDVHFLDLE-T 169 (499)
Q Consensus 94 ~iyv~GG~~~~~~~~~~~~~yd~~t-~~W~~~~~~g~~p~~r~~~~~~~-~~-~~lyv~GG~~~~~~~~~~v~~yd~~-t 169 (499)
.+|+..+.. ..+..||+.+ +.++.+.. .+..-..+.++. -+ +.||+.+. . .+.+..|++. +
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~---~~~~~~~~~l~~spd~~~lyv~~~-~-----~~~i~~~~~~~~ 67 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQV---VDVPGQVQPMVISPDKRHLYVGVR-P-----EFRVLSYRIADD 67 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeE---EecCCCCccEEECCCCCEEEEEEC-C-----CCcEEEEEECCC
Confidence 466664432 3378888754 56666552 222111122222 23 45666433 2 2467778775 4
Q ss_pred CeeEEeeecCCCCCCCccceEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCc-e-EecccCCCCCCcCcccEEEEE-C
Q 010847 170 MTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNE-W-SQPEIKGDLVTGRAGHAGITI-D 245 (499)
Q Consensus 170 ~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~-W-~~~~~~~~~p~~r~~~~~~~~-~ 245 (499)
+++..+... +.+-.-+.++.. +++.+|+.. +. .+.+.+|++.++. . ..+ ...+....-|.++.. +
T Consensus 68 g~l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~-~~----~~~v~v~~~~~~g~~~~~~---~~~~~~~~~~~~~~~p~ 136 (330)
T PRK11028 68 GALTFAAES---PLPGSPTHISTDHQGRFLFSAS-YN----ANCVSVSPLDKDGIPVAPI---QIIEGLEGCHSANIDPD 136 (330)
T ss_pred CceEEeeee---cCCCCceEEEECCCCCEEEEEE-cC----CCeEEEEEECCCCCCCCce---eeccCCCcccEeEeCCC
Confidence 566555421 111111222222 244555543 22 2568888876432 1 111 111111223444443 2
Q ss_pred -CEEEEEeCCCCCCCcceEEEEECCC
Q 010847 246 -ENWYIVGGGDNNNGCQETIVLNMTK 270 (499)
Q Consensus 246 -~~l~v~GG~~~~~~~~~~~~~d~~~ 270 (499)
+.+|+..- ..+.+.+||+.+
T Consensus 137 g~~l~v~~~-----~~~~v~v~d~~~ 157 (330)
T PRK11028 137 NRTLWVPCL-----KEDRIRLFTLSD 157 (330)
T ss_pred CCEEEEeeC-----CCCEEEEEEECC
Confidence 35555432 234688898866
No 234
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=88.92 E-value=5.4 Score=46.08 Aligned_cols=6 Identities=17% Similarity=0.545 Sum_probs=2.7
Q ss_pred EEEEcC
Q 010847 294 SAIIEG 299 (499)
Q Consensus 294 ~~~~~~ 299 (499)
+++++|
T Consensus 638 iVTl~G 643 (1163)
T COG1196 638 IVTLDG 643 (1163)
T ss_pred EEecCC
Confidence 344444
No 235
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=88.86 E-value=5.8 Score=36.86 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL 442 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (499)
+..+++..+.........++.+++..+.+++..++|++.|
T Consensus 177 ~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 177 QLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443334444444444444444444433
No 236
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.86 E-value=15 Score=32.01 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 451 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 451 (499)
.|..+..-+++.+...+.......+++.+......+.++.+..+....++..++...++.++.|-+.
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~ 74 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKH 74 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3333333334444434444455566666666666666666666666777777777766666655433
No 237
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=88.78 E-value=12 Score=34.09 Aligned_cols=42 Identities=12% Similarity=0.284 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (499)
+..++.........+.+......+++.++.+.....+++++.
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344455555555555555555444
No 238
>PF14282 FlxA: FlxA-like protein
Probab=88.70 E-value=1.4 Score=34.75 Aligned_cols=15 Identities=7% Similarity=0.350 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHhhcc
Q 010847 403 ENSRFREKIDEVNST 417 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~ 417 (499)
.+..|+..+..++.+
T Consensus 20 ~I~~L~~Qi~~Lq~q 34 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQ 34 (106)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333443333333333
No 239
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.53 E-value=4.1 Score=44.17 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 426 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (499)
+..+++..+-++..+.+......+++.+++.++.++..+..+.+
T Consensus 179 lAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~ 222 (1195)
T KOG4643|consen 179 LADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIE 222 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334443444444444444445555555555555554444433
No 240
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.50 E-value=6 Score=41.75 Aligned_cols=9 Identities=0% Similarity=0.254 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 010847 383 IDAIKEDKR 391 (499)
Q Consensus 383 ~~~l~~~~~ 391 (499)
+..++.+..
T Consensus 308 i~~l~~~l~ 316 (562)
T PHA02562 308 LKELQHSLE 316 (562)
T ss_pred HHHHHHHHH
Confidence 333333333
No 241
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.47 E-value=2.5 Score=43.25 Aligned_cols=74 Identities=23% Similarity=0.287 Sum_probs=35.9
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM-LESSQTIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~-l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
.++++......+..+...+.+++..+..+.+++++|+-++.+.++. .+.+...+.++.++.++-+++..|++++
T Consensus 294 ~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 294 AREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred HHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555555555555555555333332 2222344455555555555555554433
No 242
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=88.36 E-value=13 Score=32.25 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=6.1
Q ss_pred cccccchhhHHHHHHH
Q 010847 374 LSEKDVRTDIDAIKED 389 (499)
Q Consensus 374 ~~~~~~~~~~~~l~~~ 389 (499)
|+.+.+..++...+.+
T Consensus 16 ~skeel~~rLR~~E~e 31 (195)
T PF10226_consen 16 WSKEELVRRLRRAEAE 31 (195)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 3444443333333333
No 243
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.33 E-value=2.9 Score=36.90 Aligned_cols=13 Identities=46% Similarity=0.687 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 010847 442 LEAQIAELQKMLE 454 (499)
Q Consensus 442 ~~~~~~e~~~~l~ 454 (499)
++.++.+++.+++
T Consensus 115 l~~~~~~l~~el~ 127 (188)
T PF03962_consen 115 LKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 244
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.17 E-value=2.9 Score=37.26 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=11.2
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 433 VAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 433 ~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
....++..+++.++++.+.+|+..+
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 245
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.09 E-value=9.8 Score=38.49 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=27.6
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
.....|+.++++...++++.+++.+.+++.-+.+.+|.++.......+.+.++.+
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555444444444444443
No 246
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=88.03 E-value=17 Score=31.67 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 417 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
..++..+.|-.+..+++...++.+--+.+..++..+++.+.
T Consensus 82 K~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~ 122 (205)
T KOG1003|consen 82 KYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILD 122 (205)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444445555555555555555555555555544443
No 247
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.03 E-value=4.2 Score=47.59 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
++....++.+.+.+++..+.++..++++...++.++++++.++..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 278 YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444444444444444444444333
No 248
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.98 E-value=7.1 Score=28.30 Aligned_cols=16 Identities=6% Similarity=0.094 Sum_probs=6.6
Q ss_pred HHHHHHHHhHHHHHHH
Q 010847 461 NEVQILRQQKSAFEQE 476 (499)
Q Consensus 461 ~e~~~~~~~~~~~~~~ 476 (499)
.+....+.++..+...
T Consensus 53 ~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 53 QERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444333
No 249
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=87.95 E-value=18 Score=31.81 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=12.3
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSV 428 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 428 (499)
.-.++|+.++.+.+..+++...+|+..
T Consensus 67 ~iveqLe~ev~EAe~vV~ee~~sL~~a 93 (188)
T PF05335_consen 67 QIVEQLEQEVREAEAVVQEEKASLQQA 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 250
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.93 E-value=9.3 Score=36.15 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=25.3
Q ss_pred hhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 404 NSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
...|..++....++.....+++.++..++-.++.++..+-.+..++++.|....
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~sk 268 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASK 268 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444445555444444444444444333
No 251
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.88 E-value=31 Score=36.04 Aligned_cols=126 Identities=16% Similarity=0.222 Sum_probs=71.6
Q ss_pred CCCCCCcceEEEEE---CCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCC-CCCCccceEEEEcCcEEEEEcCC
Q 010847 129 KVPVARGGHSVTLV---GSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTP-PAPRYDHSAALHANRYLIVFGGC 204 (499)
Q Consensus 129 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-p~~r~~~~~~~~~~~~l~v~GG~ 204 (499)
.+|..+-..+...+ ++++++.- ...-+++.++..+.+..++.....- ..+-..+-++.-.+++|.++++.
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s------~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~ 496 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS------KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR 496 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe------cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc
Confidence 67777766555443 56777765 1244678888888777766542111 11222223333347788888754
Q ss_pred CCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEE---EECCEEEEEeCCCCCCCcceEEEEECCC---CceEEe
Q 010847 205 SHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGI---TIDENWYIVGGGDNNNGCQETIVLNMTK---LAWSIL 276 (499)
Q Consensus 205 ~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~---~~~~~l~v~GG~~~~~~~~~~~~~d~~~---~~W~~l 276 (499)
..|++||+++.+-..+.. .++ ++.-+++ ...++++|.- ..+.++.||+.. ..|.+.
T Consensus 497 ------g~I~v~nl~~~~~~~l~~--rln--~~vTa~~~~~~~~~~lvvat------s~nQv~efdi~~~~l~~ws~~ 558 (691)
T KOG2048|consen 497 ------GQIFVYNLETLESHLLKV--RLN--IDVTAAAFSPFVRNRLVVAT------SNNQVFEFDIEARNLTRWSKN 558 (691)
T ss_pred ------ceEEEEEcccceeecchh--ccC--cceeeeeccccccCcEEEEe------cCCeEEEEecchhhhhhhhhc
Confidence 379999999988776531 122 2222222 2245666652 234688999844 346544
No 252
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.85 E-value=4.3 Score=39.77 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=16.4
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHHHHHHH
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSVQGQLV 433 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (499)
.++..|+.++...+.++++..++.++.-+++.
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~ 46 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEKQKEAEELLEEIE 46 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444444433
No 253
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.84 E-value=4 Score=38.51 Aligned_cols=8 Identities=13% Similarity=0.563 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010847 386 IKEDKRVL 393 (499)
Q Consensus 386 l~~~~~~~ 393 (499)
|+.++..+
T Consensus 144 LEKEReqL 151 (561)
T KOG1103|consen 144 LEKEREQL 151 (561)
T ss_pred HHHHHHHH
Confidence 33333333
No 254
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=13 Score=29.84 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=4.7
Q ss_pred HHHhHHHHHHHH
Q 010847 466 LRQQKSAFEQEM 477 (499)
Q Consensus 466 ~~~~~~~~~~~~ 477 (499)
++.+++.+..++
T Consensus 96 l~e~l~eLq~~i 107 (119)
T COG1382 96 LQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 255
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=87.73 E-value=19 Score=31.89 Aligned_cols=154 Identities=12% Similarity=0.052 Sum_probs=72.2
Q ss_pred EEEECCEEEEEcCcCCCCCccCcEEEEECCCCe--eEEeeec-CCCCCCCccceEEEEc-CcEEEEEcCCCCCCCCCcEE
Q 010847 139 VTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT--WDAVEVT-QTPPAPRYDHSAALHA-NRYLIVFGGCSHSIFFNDLH 214 (499)
Q Consensus 139 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~-~~~p~~r~~~~~~~~~-~~~l~v~GG~~~~~~~~~i~ 214 (499)
++...+.+|+|-|. .+|.++..... -..+... +.+|.+. -++.... ++.+|+|-| +..|
T Consensus 12 ~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~~I--DAa~~~~~~~~~yfFkg-------~~yw 74 (194)
T cd00094 12 VTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPSPV--DAAFERPDTGKIYFFKG-------DKYW 74 (194)
T ss_pred EEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCCCc--cEEEEECCCCEEEEECC-------CEEE
Confidence 44456899999663 36666654111 1111110 1123222 2233333 367999977 3688
Q ss_pred EEECCCCceEecccCC--CCCC--cCcccEEEEE-CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCC---CC
Q 010847 215 VLDLQTNEWSQPEIKG--DLVT--GRAGHAGITI-DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNP---LA 286 (499)
Q Consensus 215 ~~d~~~~~W~~~~~~~--~~p~--~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p---~~ 286 (499)
+|+..+..+.-+.... ..|. ..-..+.... ++++|+|-| +..|+||........ ..|.... ..
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~--~yP~~i~~~w~g 145 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDP--GYPKLIETDFPG 145 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccC--CCCcchhhcCCC
Confidence 8886642222211111 1121 1112222222 578999987 357899876554321 1111000 00
Q ss_pred CC-CCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847 287 SE-GLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 326 (499)
Q Consensus 287 ~~-~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 326 (499)
.. ...+ +.... +..+|.|-|. ..|+||.....
T Consensus 146 ~p~~ida-a~~~~-~~~~yfF~g~------~y~~~d~~~~~ 178 (194)
T cd00094 146 VPDKVDA-AFRWL-DGYYYFFKGD------QYWRFDPRSKE 178 (194)
T ss_pred cCCCcce-eEEeC-CCcEEEEECC------EEEEEeCccce
Confidence 11 1122 22222 2457777664 78899987654
No 256
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.73 E-value=6.1 Score=43.94 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHH
Q 010847 425 LSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTI 459 (499)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~ 459 (499)
+.+..+.+.+++++.++++++++++++++..+++.
T Consensus 496 ~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 496 QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555666666666666666666666533
No 257
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=4.4 Score=38.37 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847 400 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 452 (499)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 452 (499)
...+++.|++..++++...++.+.+++.++++++.+++.++-|...++|-..+
T Consensus 230 ~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~ 282 (365)
T KOG2391|consen 230 LQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK 282 (365)
T ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 33455556666666666666666667777777777776666666666663333
No 258
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=87.63 E-value=14 Score=35.60 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhHHHHHH
Q 010847 459 IENEVQILRQQKSAFEQ 475 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~ 475 (499)
|.+|+++..++++++..
T Consensus 361 L~keLeekkreleql~~ 377 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKM 377 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444333333
No 259
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=87.52 E-value=4.1 Score=44.45 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847 443 EAQIAELQKMLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 443 ~~~~~e~~~~l~~~~~~~~e~~~~~~~~~ 471 (499)
++++.+++.++..+.+.+++..+++++.+
T Consensus 352 ~~~~~~l~~~~~~~p~~e~~~~~L~R~~~ 380 (726)
T PRK09841 352 EQERKRLNKRVSAMPSTQQEVLRLSRDVE 380 (726)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333333333333344455555544444
No 260
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.51 E-value=7.4 Score=42.25 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.+.++...+..++..+++++.
T Consensus 353 ~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 353 SLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 344444444555555554443
No 261
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.40 E-value=1.9 Score=41.49 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHhhcc
Q 010847 466 LRQQKSAFEQEMERATSV 483 (499)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~ 483 (499)
++++++++++++++....
T Consensus 331 i~~~l~ql~rql~~il~~ 348 (497)
T KOG3838|consen 331 IHKQLAQLERQLDKILGP 348 (497)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 344444455555444333
No 262
>PRK01742 tolB translocation protein TolB; Provisional
Probab=87.37 E-value=36 Score=34.55 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=69.2
Q ss_pred CcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEe
Q 010847 45 SDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVM 124 (499)
Q Consensus 45 ~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~ 124 (499)
..++++|+.++.-..+..... .-...+...-+..|++.....+ ..++|.+|+.++....+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g----------------~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRG----------------HNGAPAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQL 287 (429)
T ss_pred cEEEEEeCCCCceEEEecCCC----------------ccCceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEee
Confidence 358899998887666543321 0011111122344554432222 23589999988887666
Q ss_pred ecCCCCCCCCcceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE-cCcEEEEEc
Q 010847 125 ETSGKVPVARGGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-ANRYLIVFG 202 (499)
Q Consensus 125 ~~~g~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-~~~~l~v~G 202 (499)
.. .+.... .....-++ .|++.....+ ...+|.++..+..-..+.. . . +..... +++.|++.+
T Consensus 288 t~---~~~~~~-~~~wSpDG~~i~f~s~~~g----~~~I~~~~~~~~~~~~l~~--~---~---~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 288 TS---GAGNNT-EPSWSPDGQSILFTSDRSG----SPQVYRMSASGGGASLVGG--R---G---YSAQISADGKTLVMIN 351 (429)
T ss_pred cc---CCCCcC-CEEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEecC--C---C---CCccCCCCCCEEEEEc
Confidence 42 111111 11222244 4554432221 2467888876654333311 1 1 112222 344454443
Q ss_pred CCCCCCCCCcEEEEECCCCceEecc
Q 010847 203 GCSHSIFFNDLHVLDLQTNEWSQPE 227 (499)
Q Consensus 203 G~~~~~~~~~i~~~d~~~~~W~~~~ 227 (499)
+ +.++.+|+.++.+..+.
T Consensus 352 ~-------~~i~~~Dl~~g~~~~lt 369 (429)
T PRK01742 352 G-------DNVVKQDLTSGSTEVLS 369 (429)
T ss_pred C-------CCEEEEECCCCCeEEec
Confidence 3 46888999998887653
No 263
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=87.33 E-value=18 Score=32.44 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 428 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 428 (499)
.|++++..+...+.+......+....+.+.+..+.+.+.+.+++
T Consensus 81 vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~I 124 (204)
T PRK09174 81 IIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSI 124 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555454444444444444555555555554444433
No 264
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.31 E-value=32 Score=34.01 Aligned_cols=139 Identities=13% Similarity=0.041 Sum_probs=74.2
Q ss_pred cEEEEEcCCCc--eEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCC--cE
Q 010847 46 DVQVFDLRSLA--WSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETN--LC 121 (499)
Q Consensus 46 ~~~~yd~~t~~--W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~--~W 121 (499)
.++.+|+.+++ |+...... ......-....+++||+-.. .+ .+++||..++ .|
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~----------------~~~~~~~~~~~~G~i~~g~~-~g------~~y~ld~~~G~~~W 135 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGA----------------VAQLSGPILGSDGKIYVGSW-DG------KLYALDASTGTLVW 135 (370)
T ss_pred cEEEEeCCCCcEEecccCcCc----------------ceeccCceEEeCCeEEEecc-cc------eEEEEECCCCcEEE
Confidence 69999999987 87754420 01111112222677776433 22 4999999655 57
Q ss_pred EEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCC--eeEEeeecCCCCCCCccceEEEEcCcEEE
Q 010847 122 GVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETM--TWDAVEVTQTPPAPRYDHSAALHANRYLI 199 (499)
Q Consensus 122 ~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~p~~r~~~~~~~~~~~~l~ 199 (499)
...... . ++....++..++.+|+.- ..+.++++|..+. .|..-...+ .+ .+.....+ +.++.+|
T Consensus 136 ~~~~~~---~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~-~~-~~~~~~~~-~~~~~vy 201 (370)
T COG1520 136 SRNVGG---S-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAP-LS-LSIYGSPA-IASGTVY 201 (370)
T ss_pred EEecCC---C-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCc-cc-cccccCce-eecceEE
Confidence 766532 1 333333444455565542 1356889988765 587444321 11 22111222 4466344
Q ss_pred EEcCCCCCCCCCcEEEEECCCCc--eEe
Q 010847 200 VFGGCSHSIFFNDLHVLDLQTNE--WSQ 225 (499)
Q Consensus 200 v~GG~~~~~~~~~i~~~d~~~~~--W~~ 225 (499)
+|..+ . ...++.+|+.+++ |..
T Consensus 202 -~~~~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 202 -VGSDG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -EecCC--C-cceEEEEEccCCcEeeee
Confidence 44332 1 2369999997765 874
No 265
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.21 E-value=5 Score=36.70 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQ 475 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~ 475 (499)
+|+.++.++.-+++...+
T Consensus 113 ~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 113 KLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 266
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.20 E-value=19 Score=31.36 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Q 010847 459 IENEVQILRQQKSAFEQEMERAT 481 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~~~~ 481 (499)
...+.+.+++.+..+++..+.++
T Consensus 150 ~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555554443
No 267
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=87.16 E-value=16 Score=30.21 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
.+..++.+++..+..+..++.........|...
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~ 92 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEES 92 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444333
No 268
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=87.11 E-value=23 Score=32.19 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=65.6
Q ss_pred CEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEEEcCcCCCCCccCcEEEEECCCCe
Q 010847 93 TKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLVG-SRLIIFGGEDRSRKLLNDVHFLDLETMT 171 (499)
Q Consensus 93 ~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~v~~yd~~t~~ 171 (499)
+.+++.|+. ...+..||+.+..-...- . .....-.++.... +.+++.|+. ...+.+||+.+.+
T Consensus 105 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~ 168 (289)
T cd00200 105 GRILSSSSR------DKTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTGK 168 (289)
T ss_pred CCEEEEecC------CCeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEccccc
Confidence 456666652 234889998865433222 1 1111112223333 344444431 2358889987543
Q ss_pred eEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEEC-CEEEE
Q 010847 172 WDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITID-ENWYI 250 (499)
Q Consensus 172 W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~-~~l~v 250 (499)
-...-. .....-.++....++..+++++.+ +.+.+||+.+......- . .....-.++.... +.+++
T Consensus 169 ~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~~~--~--~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 169 CVATLT----GHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLGTL--R--GHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred cceeEe----cCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCceecch--h--hcCCceEEEEEcCCCcEEE
Confidence 221111 011112223333344345555542 46889998764433211 0 1111222333333 34555
Q ss_pred EeCCCCCCCcceEEEEECCCCc
Q 010847 251 VGGGDNNNGCQETIVLNMTKLA 272 (499)
Q Consensus 251 ~GG~~~~~~~~~~~~~d~~~~~ 272 (499)
.++.+ ..+.+||+.+..
T Consensus 236 ~~~~~-----~~i~i~~~~~~~ 252 (289)
T cd00200 236 SGSED-----GTIRVWDLRTGE 252 (289)
T ss_pred EEcCC-----CcEEEEEcCCce
Confidence 44412 247888877543
No 269
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.02 E-value=7.6 Score=41.10 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=5.5
Q ss_pred hhhHHHHHHhhccch
Q 010847 405 SRFREKIDEVNSTHS 419 (499)
Q Consensus 405 ~~l~~~~~~~~~~~~ 419 (499)
..++..+.+.+...+
T Consensus 333 adirc~LlEarrk~e 347 (1265)
T KOG0976|consen 333 ADIRCALLEARRKAE 347 (1265)
T ss_pred HHHHHHHHHHHHhhc
Confidence 333333333333333
No 270
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=86.96 E-value=22 Score=31.91 Aligned_cols=48 Identities=8% Similarity=0.224 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 431 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 431 (499)
..+.+++..++..+.+......+....+.+.+..+++.+.+.++...+
T Consensus 75 ~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~ 122 (205)
T PRK06231 75 RFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQ 122 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555566666666665555444433
No 271
>PRK11546 zraP zinc resistance protein; Provisional
Probab=86.90 E-value=5.8 Score=32.97 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHHH
Q 010847 439 CFKLEAQIAELQKM 452 (499)
Q Consensus 439 ~~~~~~~~~e~~~~ 452 (499)
+.++..++.+++.+
T Consensus 91 I~aL~kEI~~Lr~k 104 (143)
T PRK11546 91 INAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344333333333
No 272
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=86.89 E-value=21 Score=31.35 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ 429 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 429 (499)
.+++++..+...+.+......+......+.+..+.+.+.+-+++.
T Consensus 59 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii 103 (181)
T PRK13454 59 VLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIV 103 (181)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444444455555555555555555544433
No 273
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.88 E-value=14 Score=32.65 Aligned_cols=92 Identities=16% Similarity=0.306 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
|.-|+...++.+..+...-.++-.|+..+.+....+...+..+...+..+ +.+..+++....|++++..+..-+.++
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~---~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSL---RTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 44455555554444444445666666666666666666555554444333 334445555555555555555444444
Q ss_pred HHHHHHhHHHHHHHH
Q 010847 463 VQILRQQKSAFEQEM 477 (499)
Q Consensus 463 ~~~~~~~~~~~~~~~ 477 (499)
+..+.+++..+..++
T Consensus 89 l~~le~El~~Lr~~l 103 (202)
T PF06818_consen 89 LGQLEAELAELREEL 103 (202)
T ss_pred hhhhHHHHHHHHHHH
Confidence 444444444443333
No 274
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=7.1 Score=31.24 Aligned_cols=16 Identities=6% Similarity=0.385 Sum_probs=6.3
Q ss_pred HhhhhhHHHHHHhhcc
Q 010847 402 TENSRFREKIDEVNST 417 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~ 417 (499)
.+..+++..+.+.+..
T Consensus 27 ~qk~~le~qL~E~~~a 42 (119)
T COG1382 27 LQKQQLEAQLKEIEKA 42 (119)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444443333
No 275
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.85 E-value=11 Score=39.24 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=18.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHhHHHH
Q 010847 436 RSRCFKLEAQIAELQKMLESSQ--------TIENEVQILRQQKSAF 473 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~--------~~~~e~~~~~~~~~~~ 473 (499)
+++.+.+=+++.++.+.|+..+ .+..|+.+++++++..
T Consensus 579 r~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 579 RERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445554444333 3445556666666533
No 276
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.77 E-value=27 Score=32.54 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=39.1
Q ss_pred cCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEec
Q 010847 159 LNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 226 (499)
Q Consensus 159 ~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 226 (499)
...++.||+.+.+|.+-..-+. .+| ..++-+...+++.+. ....+.|.+||+.+.+.+.+
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs--~ar-pys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~ 312 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGS--KAR-PYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVL 312 (353)
T ss_pred CceeeEeCcccccceeeeCCCC--CCC-cceeeeccCCcEEee-----ccccCceeecCcccceEEEe
Confidence 4578999999999988864222 122 233333334444442 23357899999999999886
No 277
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=86.71 E-value=13 Score=30.91 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQEMER 479 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~ 479 (499)
++++++..++++++++.+.+++
T Consensus 112 ~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 112 KLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 278
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=86.70 E-value=23 Score=35.61 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=83.6
Q ss_pred cCcEEEEEcCCC-----ceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCC
Q 010847 44 LSDVQVFDLRSL-----AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLET 118 (499)
Q Consensus 44 ~~~~~~yd~~t~-----~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t 118 (499)
.+.++.+|...+ .|..+.+.. .-..+.+...++.+|+.-..... ...+..+++.+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~~-----------------~~~~~~v~~~~~~~yi~Tn~~a~---~~~l~~~~l~~ 310 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPRE-----------------DGVEYYVDHHGDRLYILTNDDAP---NGRLVAVDLAD 310 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEESS-----------------SS-EEEEEEETTEEEEEE-TT-T---T-EEEEEETTS
T ss_pred CCeEEEEeccccCCCcCCcEEEeCCC-----------------CceEEEEEccCCEEEEeeCCCCC---CcEEEEecccc
Confidence 368899999875 788876532 23344455568999988763332 34588888887
Q ss_pred Cc---EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEE--
Q 010847 119 NL---CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALH-- 193 (499)
Q Consensus 119 ~~---W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~-- 193 (499)
.. |..+-. .......--.+...+++|++.-=.+ ....+.+||+. ..|..... .+| -.+......
T Consensus 311 ~~~~~~~~~l~--~~~~~~~l~~~~~~~~~Lvl~~~~~----~~~~l~v~~~~-~~~~~~~~--~~p--~~g~v~~~~~~ 379 (414)
T PF02897_consen 311 PSPAEWWTVLI--PEDEDVSLEDVSLFKDYLVLSYREN----GSSRLRVYDLD-DGKESREI--PLP--EAGSVSGVSGD 379 (414)
T ss_dssp TSGGGEEEEEE----SSSEEEEEEEEETTEEEEEEEET----TEEEEEEEETT--TEEEEEE--ESS--SSSEEEEEES-
T ss_pred cccccceeEEc--CCCCceeEEEEEEECCEEEEEEEEC----CccEEEEEECC-CCcEEeee--cCC--cceEEeccCCC
Confidence 75 664321 2222223445556788888764332 25579999988 22333332 122 122111111
Q ss_pred --cCcEEEEEcCCCCCCCCCcEEEEECCCCceEec
Q 010847 194 --ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQP 226 (499)
Q Consensus 194 --~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~ 226 (499)
.+...|.+.+.. ....+|.||+.+++.+.+
T Consensus 380 ~~~~~~~~~~ss~~---~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 380 FDSDELRFSYSSFT---TPPTVYRYDLATGELTLL 411 (414)
T ss_dssp TT-SEEEEEEEETT---EEEEEEEEETTTTCEEEE
T ss_pred CCCCEEEEEEeCCC---CCCEEEEEECCCCCEEEE
Confidence 134445555543 234799999999987665
No 279
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=86.69 E-value=11 Score=36.02 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=4.4
Q ss_pred HhhccchHHHHHH
Q 010847 413 EVNSTHSELSKEL 425 (499)
Q Consensus 413 ~~~~~~~~~~~~~ 425 (499)
.....+.+.++++
T Consensus 194 q~d~~L~~~ek~~ 206 (297)
T PF02841_consen 194 QADQQLTEKEKEI 206 (297)
T ss_dssp HH-TTS-HHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444433
No 280
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=86.59 E-value=6.1 Score=28.84 Aligned_cols=38 Identities=24% Similarity=0.245 Sum_probs=15.5
Q ss_pred hccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847 415 NSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 452 (499)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 452 (499)
..++..+..+-+.+..........+.+|..++.+.+.+
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444433
No 281
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.54 E-value=13 Score=39.54 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=19.2
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ 445 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (499)
+++.+++...+++.++++.+.++++...+.+++++....++.+
T Consensus 672 ~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 672 QIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555444444444444444444333333
No 282
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.51 E-value=15 Score=37.29 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH--------
Q 010847 375 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI-------- 446 (499)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 446 (499)
+++.++.+++.|.++..+......+...--..+-++-..++.+.++.+.++...+.++++.++..-+...+.
T Consensus 9 ~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~ 88 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGE 88 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q ss_pred -----------HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010847 447 -----------AELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 447 -----------~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 482 (499)
...+--++++-+++.++.|+++.+.....|.+++.+
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~ 135 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEK 135 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 283
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=86.49 E-value=8.4 Score=33.78 Aligned_cols=14 Identities=14% Similarity=0.432 Sum_probs=5.2
Q ss_pred CcccccchhhHHHH
Q 010847 373 DLSEKDVRTDIDAI 386 (499)
Q Consensus 373 ~~~~~~~~~~~~~l 386 (499)
+|+.-.++.++..|
T Consensus 95 dwEevrLkrELa~L 108 (195)
T PF12761_consen 95 DWEEVRLKRELAEL 108 (195)
T ss_pred chHHHHHHHHHHHH
Confidence 34433333333333
No 284
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=86.45 E-value=16 Score=29.70 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847 454 ESSQTIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 454 ~~~~~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.++.++..++..++.+...++..++
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 285
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.45 E-value=19 Score=32.78 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=30.3
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 426 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (499)
+...+..+++........+........+++.++++.+....++++..+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~ 75 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAE 75 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355556655555556666666667777777777777777766543
No 286
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=86.44 E-value=13 Score=37.31 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010847 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 454 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 454 (499)
+...+.+.....+++++...++..++|..-+|..++..++++++
T Consensus 207 lrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 207 LRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333444444444444444444444444444444433
No 287
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.44 E-value=8.1 Score=29.93 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.2
Q ss_pred hhhHHH
Q 010847 405 SRFREK 410 (499)
Q Consensus 405 ~~l~~~ 410 (499)
..|+..
T Consensus 29 ~~L~e~ 34 (102)
T PF10205_consen 29 AELKEQ 34 (102)
T ss_pred HHHHHH
Confidence 333333
No 288
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=86.39 E-value=17 Score=29.98 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=8.9
Q ss_pred HHhhccchHHHHHHHHHHHHHH
Q 010847 412 DEVNSTHSELSKELSSVQGQLV 433 (499)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (499)
+..-...++..++|.+++++++
T Consensus 55 q~~LgrveEetkrLa~ireeLE 76 (159)
T PF04949_consen 55 QAQLGRVEEETKRLAEIREELE 76 (159)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444333
No 289
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=86.37 E-value=22 Score=31.36 Aligned_cols=18 Identities=17% Similarity=0.564 Sum_probs=7.5
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 010847 460 ENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 460 ~~e~~~~~~~~~~~~~~~ 477 (499)
+.|++.+.++-+++..++
T Consensus 169 ~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 169 QEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 290
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.35 E-value=13 Score=40.31 Aligned_cols=42 Identities=19% Similarity=0.424 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (499)
.+.++..+..++..+.....+.+.++.++++.+..+.+++.+
T Consensus 598 lE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e 639 (769)
T PF05911_consen 598 LEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE 639 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433334444444444444333333333
No 291
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=85.85 E-value=26 Score=31.45 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHhHHHHHHHH
Q 010847 440 FKLEAQIAELQKMLESSQ-----TIENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 440 ~~~~~~~~e~~~~l~~~~-----~~~~e~~~~~~~~~~~~~~~ 477 (499)
...+.+++.+++++..++ ++.+-..++.+++..+++++
T Consensus 81 ~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~ 123 (206)
T PF14988_consen 81 EQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEA 123 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666655544 33444445556666665555
No 292
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=85.77 E-value=8.9 Score=40.54 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
+..+++.|..++..+...+...-.+...|.....+.+..+.++++.++..+.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666766666666555444344455555555555555555555554443
No 293
>PRK10780 periplasmic chaperone; Provisional
Probab=85.71 E-value=16 Score=31.57 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=8.9
Q ss_pred hhHHHHHHhhccchHHHHHHHH
Q 010847 406 RFREKIDEVNSTHSELSKELSS 427 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~ 427 (499)
+|+.+....+.+++....+++.
T Consensus 47 ~le~~~~~~q~el~~~~~elq~ 68 (165)
T PRK10780 47 QLENEFKGRASELQRMETDLQA 68 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 294
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=85.55 E-value=14 Score=39.21 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=50.9
Q ss_pred HHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 010847 389 DKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQ 468 (499)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~ 468 (499)
++++++..+.+.+.++.+++.+|+..+.++...+.++++..++....+.+..-|+..-+.-+++-+...+..++++.+.+
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666777777777777777777777766666666666666666555555555555554444444444444444
Q ss_pred hHH
Q 010847 469 QKS 471 (499)
Q Consensus 469 ~~~ 471 (499)
+++
T Consensus 160 ~~q 162 (632)
T PF14817_consen 160 QLQ 162 (632)
T ss_pred HHH
Confidence 443
No 295
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.45 E-value=9.6 Score=41.60 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=29.2
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 458 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 458 (499)
.+..-+..++...++.+.+..+++++.+..+..++....+++..+...++++..++.
T Consensus 643 ~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~ 699 (1072)
T KOG0979|consen 643 AEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN 699 (1072)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555545555555444444444443
No 296
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.18 E-value=22 Score=33.49 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKID 412 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 412 (499)
+.++++.+.++...+.+.......+.....
T Consensus 71 v~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 71 VQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444
No 297
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=85.07 E-value=14 Score=29.61 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=22.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHH--HHHHHHHHHhHHHHHHHHH
Q 010847 436 RSRCFKLEAQIAELQKMLESSQTI--ENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~~~--~~e~~~~~~~~~~~~~~~~ 478 (499)
+.++.+.+.++.|.+.+|++.+.- .+++...++.+.....+|+
T Consensus 69 q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea~~eL~ 113 (115)
T PF06476_consen 69 QQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEAKAELK 113 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666666666521 1444444444444444443
No 298
>PF14182 YgaB: YgaB-like protein
Probab=85.03 E-value=6.7 Score=28.54 Aligned_cols=44 Identities=20% Similarity=0.467 Sum_probs=21.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010847 432 LVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 476 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~ 476 (499)
++.+-+||++.+.++.+++++ ..+..++.|+.+..++++.+.+-
T Consensus 19 LQsElERCqeIE~eL~~l~~e-a~l~~i~~EI~~mkk~Lk~Iq~~ 62 (79)
T PF14182_consen 19 LQSELERCQEIEKELKELERE-AELHSIQEEISQMKKELKEIQRV 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666555554 23334444444444444443333
No 299
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=84.99 E-value=19 Score=29.09 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 435 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (499)
+..+|-.++.-+....+.+-+.+.--.-|+++++.++.+..-+++-+...+..+..+
T Consensus 11 LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iL 67 (134)
T PF15233_consen 11 LINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRIL 67 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334444454444444444444555555666666666655554444333333333333
No 300
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.96 E-value=6.1 Score=34.26 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=24.9
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQ--LVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+..+|+.++.+++.+...++.++..+... .+++...+.+++.++.+++.+|..++
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 23334444444444444444444444
No 301
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.96 E-value=20 Score=35.51 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847 454 ESSQTIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 454 ~~~~~~~~e~~~~~~~~~~~~~~~~ 478 (499)
+.+.++..+-.++|+|+..+...++
T Consensus 403 ~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334555566666666666555553
No 302
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=20 Score=36.05 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhhhhhH
Q 010847 423 KELSSVQGQLVAERSRCFK 441 (499)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~ 441 (499)
-+|++.++.+..+.+|+.+
T Consensus 376 ~KI~~~k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 376 AKIEEAKNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 303
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=84.89 E-value=5.4 Score=41.63 Aligned_cols=19 Identities=11% Similarity=0.352 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQE 476 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~ 476 (499)
+++.+.++++++..++++.
T Consensus 241 ~l~~~~~~~~~~~~~lk~a 259 (555)
T TIGR03545 241 DLQNDKKQLKADLAELKKA 259 (555)
T ss_pred HHHHhHHHHHHHHHHHHhc
Confidence 3444444444444444443
No 304
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=84.87 E-value=8.2 Score=35.97 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 010847 458 TIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
..+++.+++..++..|++||-++
T Consensus 63 dYqrq~~elneEkrtLeRELARa 85 (351)
T PF07058_consen 63 DYQRQVQELNEEKRTLERELARA 85 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67778888888888888887543
No 305
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=84.87 E-value=23 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 428 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 428 (499)
..+.+++..+...+.+......+......+.+..+.+.+.+.++.
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~i 93 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444445455555555555555444433
No 306
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=84.87 E-value=13 Score=38.27 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=8.0
Q ss_pred ccchhhHHHHHHHHHHH
Q 010847 377 KDVRTDIDAIKEDKRVL 393 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~ 393 (499)
.+|+.++..|+..|+.+
T Consensus 107 ~~yQerLaRLe~dkesL 123 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESL 123 (861)
T ss_pred hHHHHHHHHHhcchhhh
Confidence 34444445555555544
No 307
>PTZ00421 coronin; Provisional
Probab=84.78 E-value=52 Score=34.06 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=35.1
Q ss_pred CEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCc
Q 010847 144 SRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNE 222 (499)
Q Consensus 144 ~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~ 222 (499)
+.+++.||.+ ..+.++|+.+.+-...- ... .-.-.++....++.+++.|+.+ ..+.+||+.++.
T Consensus 138 ~~iLaSgs~D------gtVrIWDl~tg~~~~~l--~~h--~~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGAD------MVVNVWDVERGKAVEVI--KCH--SDQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCC------CEEEEEECCCCeEEEEE--cCC--CCceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 3577777754 35888998876532111 111 1111222223355577777654 358899988765
No 308
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=84.76 E-value=10 Score=32.28 Aligned_cols=11 Identities=27% Similarity=0.241 Sum_probs=3.9
Q ss_pred hccchHHHHHH
Q 010847 415 NSTHSELSKEL 425 (499)
Q Consensus 415 ~~~~~~~~~~~ 425 (499)
+.+++..++++
T Consensus 49 ~~~l~~~~~el 59 (158)
T PF03938_consen 49 QKELQAKQKEL 59 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 309
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=84.73 E-value=6.3 Score=33.44 Aligned_cols=12 Identities=8% Similarity=0.277 Sum_probs=4.6
Q ss_pred HHHHhhccchHH
Q 010847 410 KIDEVNSTHSEL 421 (499)
Q Consensus 410 ~~~~~~~~~~~~ 421 (499)
-++..+++++|.
T Consensus 113 ~ln~FR~qm~dl 124 (179)
T PF14723_consen 113 SLNSFREQMMDL 124 (179)
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 310
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.68 E-value=4.8 Score=39.44 Aligned_cols=57 Identities=25% Similarity=0.288 Sum_probs=37.8
Q ss_pred hhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847 396 SLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKM 452 (499)
Q Consensus 396 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 452 (499)
.+.+....+.-++..+++.+..+.+.++++++.+.++...+.++..++.+..+..++
T Consensus 208 ~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 208 KYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp HHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566667777777777777777777777777777766666666665444443
No 311
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=84.62 E-value=12 Score=32.96 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHH
Q 010847 429 QGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~ 478 (499)
..++.+..+.+.+++..+.+++++.+.+. ...+++.+++...+++.++++
T Consensus 123 ~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~ 176 (190)
T PF05266_consen 123 EAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIE 176 (190)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666666543333 233444444444444444443
No 312
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=84.49 E-value=21 Score=34.08 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=10.2
Q ss_pred HHHHhHHHHHHHHHHHHHhHHH
Q 010847 451 KMLESSQTIENEVQILRQQKSA 472 (499)
Q Consensus 451 ~~l~~~~~~~~e~~~~~~~~~~ 472 (499)
++.+....+..++..++.++.+
T Consensus 144 r~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 144 RQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333455555555555543
No 313
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=84.30 E-value=27 Score=30.42 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=41.6
Q ss_pred CccCcEEEEECCCCeeEEeeecCC--CCCCCccceEEEEcCcEEEEEcCCCCC--CCCCcEEEEECCCCceEecc
Q 010847 157 KLLNDVHFLDLETMTWDAVEVTQT--PPAPRYDHSAALHANRYLIVFGGCSHS--IFFNDLHVLDLQTNEWSQPE 227 (499)
Q Consensus 157 ~~~~~v~~yd~~t~~W~~~~~~~~--~p~~r~~~~~~~~~~~~l~v~GG~~~~--~~~~~i~~~d~~~~~W~~~~ 227 (499)
.....+|++|..++.|..+..... --.|. -+.-++|..|+|+=|...+ .--..+|+|++.++.-+.+.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK---~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK---YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc---eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEee
Confidence 356789999999999877755221 11233 2334455444444443222 23357999999999887763
No 314
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=84.29 E-value=11 Score=32.03 Aligned_cols=9 Identities=0% Similarity=0.040 Sum_probs=3.3
Q ss_pred HHHhhccch
Q 010847 411 IDEVNSTHS 419 (499)
Q Consensus 411 ~~~~~~~~~ 419 (499)
++..+.+++
T Consensus 52 l~~~~~el~ 60 (158)
T PF03938_consen 52 LQAKQKELQ 60 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 315
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.11 E-value=33 Score=31.29 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHhHHHH
Q 010847 458 TIENEVQILRQQKSAF 473 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~ 473 (499)
.+.++...+..+...+
T Consensus 85 r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 85 RLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 316
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=84.08 E-value=5.7 Score=36.90 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 010847 424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEV 463 (499)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~ 463 (499)
+.+.+..+++.+..|-++|+.++.+++++++.+.++..+.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666666666666555444
No 317
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.08 E-value=13 Score=40.38 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=35.5
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHH----HHHHHHHHHhHHHHHHHHHHh
Q 010847 405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTI----ENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~----~~e~~~~~~~~~~~~~~~~~~ 480 (499)
..++.+++..+.++++.-.+++++...+...+.+..++-+...++.+++.+++.. =+|-.+++..+..+++.++++
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444445555555555555555555422 223333344444555555444
Q ss_pred h
Q 010847 481 T 481 (499)
Q Consensus 481 ~ 481 (499)
+
T Consensus 494 ~ 494 (1200)
T KOG0964|consen 494 E 494 (1200)
T ss_pred H
Confidence 3
No 318
>PRK11519 tyrosine kinase; Provisional
Probab=83.89 E-value=9.7 Score=41.55 Aligned_cols=6 Identities=33% Similarity=0.396 Sum_probs=2.8
Q ss_pred ceeeee
Q 010847 490 GVWRWI 495 (499)
Q Consensus 490 ~~~~~~ 495 (499)
+.|+-|
T Consensus 405 ~~~rIi 410 (719)
T PRK11519 405 GDVRIV 410 (719)
T ss_pred CCeEEE
Confidence 445544
No 319
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.72 E-value=17 Score=38.23 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=21.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHH
Q 010847 430 GQLVAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFE 474 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~ 474 (499)
++.++..++...|.+++....+++..++ ++...++.++++++++.
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344444445555555555555555554 23333344444444443
No 320
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=83.71 E-value=7.5 Score=39.85 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847 436 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~ 471 (499)
+.++..++.++..++.++...-+.+.++.+++++.+
T Consensus 348 ~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~ 383 (458)
T COG3206 348 EQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAE 383 (458)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHH
Confidence 334444444444444444444445555555555544
No 321
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=83.66 E-value=29 Score=34.93 Aligned_cols=89 Identities=12% Similarity=0.105 Sum_probs=50.1
Q ss_pred cEEEEECCCCc----eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCC
Q 010847 212 DLHVLDLQTNE----WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLAS 287 (499)
Q Consensus 212 ~i~~~d~~~~~----W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~ 287 (499)
.+..||..... |.+. -..|..+-+.+..+..|+|.-|++. .+++||+....-+..-.
T Consensus 188 ~VtlwDv~g~sp~~~~~~~-----HsAP~~gicfspsne~l~vsVG~Dk-----ki~~yD~~s~~s~~~l~--------- 248 (673)
T KOG4378|consen 188 AVTLWDVQGMSPIFHASEA-----HSAPCRGICFSPSNEALLVSVGYDK-----KINIYDIRSQASTDRLT--------- 248 (673)
T ss_pred eEEEEeccCCCcccchhhh-----ccCCcCcceecCCccceEEEecccc-----eEEEeecccccccceee---------
Confidence 46777765432 4443 1223444455566778888888654 58899987654332211
Q ss_pred CCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECC
Q 010847 288 EGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLK 323 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 323 (499)
+.+.+..+.+..+.++++.|-..| .++.||+.
T Consensus 249 y~~Plstvaf~~~G~~L~aG~s~G----~~i~YD~R 280 (673)
T KOG4378|consen 249 YSHPLSTVAFSECGTYLCAGNSKG----ELIAYDMR 280 (673)
T ss_pred ecCCcceeeecCCceEEEeecCCc----eEEEEecc
Confidence 112233344444557777776665 66677764
No 322
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.66 E-value=13 Score=36.85 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=5.3
Q ss_pred HHHHHHHHhHHHHH
Q 010847 461 NEVQILRQQKSAFE 474 (499)
Q Consensus 461 ~e~~~~~~~~~~~~ 474 (499)
+-++..+-++..+|
T Consensus 305 E~~Es~qtRisklE 318 (395)
T PF10267_consen 305 EVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 323
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=83.58 E-value=18 Score=36.83 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHHhhhhhhHHHHHH
Q 010847 431 QLVAERSRCFKLEAQI 446 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~ 446 (499)
+++.++++.+.++..+
T Consensus 640 ~a~~ERee~eRl~~er 655 (940)
T KOG4661|consen 640 KAAVEREELERLKAER 655 (940)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 324
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=83.53 E-value=0.35 Score=48.90 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQ 431 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 431 (499)
++..|++.|....+.++|.|++|...+++
T Consensus 377 EI~~LkErL~~S~rkLeEyErrLl~QEqq 405 (495)
T PF12004_consen 377 EIQSLKERLRMSHRKLEEYERRLLSQEQQ 405 (495)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55556666666666666666655444443
No 325
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=83.48 E-value=29 Score=30.13 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
..+.+++..+...+........+....+.+.+.++.+.+.+.+++..
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 91 (173)
T PRK13453 45 DVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILE 91 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444545555555555555555444433
No 326
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.44 E-value=15 Score=37.80 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhHH
Q 010847 383 IDAIKEDKRVLELSLTE 399 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~ 399 (499)
+++..+..++++-.+.+
T Consensus 134 VeaQgEKIrDLE~cie~ 150 (861)
T KOG1899|consen 134 VEAQGEKIRDLETCIEE 150 (861)
T ss_pred HHHhhhhHHHHHHHHHH
Confidence 33344444444444433
No 327
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=83.34 E-value=24 Score=29.38 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=10.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHH
Q 010847 435 ERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 435 ~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+++++..++..+..+++++..++
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~ 121 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLA 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 328
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.33 E-value=27 Score=31.86 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=27.6
Q ss_pred EEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCC-CCCCCc
Q 010847 264 IVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPR-DIPRPK 331 (499)
Q Consensus 264 ~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~-~W~~~~ 331 (499)
|.-+.....|+.-.. ...|.+.++.+. .+.+ +.|-|-||.+ .+.++..+.. +|..+.
T Consensus 238 wt~~~e~e~wk~tll--~~f~~~~w~vSW---S~sG-n~LaVs~GdN-----kvtlwke~~~Gkw~~v~ 295 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLL--EEFPDVVWRVSW---SLSG-NILAVSGGDN-----KVTLWKENVDGKWEEVG 295 (299)
T ss_pred EEecCccCccccccc--ccCCcceEEEEE---eccc-cEEEEecCCc-----EEEEEEeCCCCcEEEcc
Confidence 344445567764211 112333333332 2333 4666666654 5666666544 777654
No 329
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.27 E-value=17 Score=39.54 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=7.6
Q ss_pred hhhhhHHHHHHhhccchHHH
Q 010847 403 ENSRFREKIDEVNSTHSELS 422 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~ 422 (499)
++..|+.+++..+..+.+..
T Consensus 344 dve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 344 DVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 330
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=83.27 E-value=30 Score=30.07 Aligned_cols=46 Identities=7% Similarity=0.104 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
.|.+++..+...+.+......+..+.+.+.+..+.+.+.+.+++..
T Consensus 44 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~ 89 (173)
T PRK13460 44 ALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVA 89 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555545444444444444555555555555555444433
No 331
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.17 E-value=19 Score=39.53 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=3.5
Q ss_pred EEcCCCC
Q 010847 305 AFGGYNG 311 (499)
Q Consensus 305 v~GG~~~ 311 (499)
+.||...
T Consensus 661 lTGGs~~ 667 (1174)
T KOG0933|consen 661 LTGGSRS 667 (1174)
T ss_pred ccCCCCC
Confidence 3466543
No 332
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=83.13 E-value=17 Score=35.59 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010847 393 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVA 434 (499)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (499)
+..+....+.+..-++..++..+.++.++++|..++.++.-.
T Consensus 32 ~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 32 LSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455556666666666666666665555544433
No 333
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.13 E-value=18 Score=33.69 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhHH
Q 010847 458 TIENEVQILRQQKS 471 (499)
Q Consensus 458 ~~~~e~~~~~~~~~ 471 (499)
+|+++...+++++.
T Consensus 388 ~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 388 QLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 334
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.00 E-value=21 Score=39.14 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=6.9
Q ss_pred cchHHHHHHHHHHHHHH
Q 010847 417 THSELSKELSSVQGQLV 433 (499)
Q Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (499)
++.+++++++..++.++
T Consensus 788 rlkdl~keik~~k~~~e 804 (1174)
T KOG0933|consen 788 RLKDLEKEIKTAKQRAE 804 (1174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 335
>smart00284 OLF Olfactomedin-like domains.
Probab=82.90 E-value=40 Score=31.28 Aligned_cols=165 Identities=12% Similarity=-0.002 Sum_probs=81.2
Q ss_pred CCEEEEEcCcCCCCCccCcEEEEEC----CCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEEC
Q 010847 143 GSRLIIFGGEDRSRKLLNDVHFLDL----ETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDL 218 (499)
Q Consensus 143 ~~~lyv~GG~~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~ 218 (499)
++++|++.|.+. ..+.+..|.. ....+...- .+|.+-.+.+.+++++. +|.--. .++.|.+||+
T Consensus 34 ~~~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~---~Lp~~~~GtG~VVYngs-lYY~~~-----~s~~iiKydL 101 (255)
T smart00284 34 KSLYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDH---PLPHAGQGTGVVVYNGS-LYFNKF-----NSHDICRFDL 101 (255)
T ss_pred CceEEEEccccC---CCcEEEEecCHHHHhccCCceEE---ECCCccccccEEEECce-EEEEec-----CCccEEEEEC
Confidence 578888877542 1345666643 233332221 35667777777888544 666332 2467999999
Q ss_pred CCCceEe---cccC---CCCCCcCccc---EEEEECCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCC
Q 010847 219 QTNEWSQ---PEIK---GDLVTGRAGH---AGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEG 289 (499)
Q Consensus 219 ~~~~W~~---~~~~---~~~p~~r~~~---~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~ 289 (499)
.+.+-.. ++.. ...|-...++ -.++..+-|+|+=....+...--+-.+|+.+..-.+.=..+. +....+
T Consensus 102 ~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~--~k~sa~ 179 (255)
T smart00284 102 TTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTY--NKRSAS 179 (255)
T ss_pred CCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCC--Cccccc
Confidence 9987543 2211 1112211122 233444555555332222222234467776654222211111 112222
Q ss_pred CceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847 290 LSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 326 (499)
Q Consensus 290 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 326 (499)
.++.+ |..||++-........-.+.||+.+.+
T Consensus 180 naFmv-----CGvLY~~~s~~~~~~~I~yayDt~t~~ 211 (255)
T smart00284 180 NAFMI-----CGILYVTRSLGSKGEKVFYAYDTNTGK 211 (255)
T ss_pred ccEEE-----eeEEEEEccCCCCCcEEEEEEECCCCc
Confidence 22222 346777754333333457889987754
No 336
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=82.89 E-value=0.38 Score=52.19 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHH---HHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHhH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELS---KELSSVQGQLVAERS---RCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~e~~~~l~~~ 456 (499)
++.++++....+......+.+...++.++.+++.++.++. ++.+.++.++..+++ +..+++..+.-.+++|+.+
T Consensus 248 l~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~ 327 (713)
T PF05622_consen 248 LRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDL 327 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333333344444443333333332 223344444444433 3344444444444444444
Q ss_pred H
Q 010847 457 Q 457 (499)
Q Consensus 457 ~ 457 (499)
.
T Consensus 328 ~ 328 (713)
T PF05622_consen 328 E 328 (713)
T ss_dssp -
T ss_pred H
Confidence 4
No 337
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=82.79 E-value=31 Score=29.99 Aligned_cols=47 Identities=9% Similarity=0.156 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
..+.+++..+...+........+....+++.+.++++.+++.++...
T Consensus 45 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~ 91 (175)
T PRK14472 45 SALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR 91 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544444555555555566666655555444433
No 338
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=82.64 E-value=30 Score=30.41 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH----H
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT----I 459 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~----~ 459 (499)
++|+.+.++.+..+.+.......-+..+........+.+.+++.++.-++..+..+...+.-...-+++|.+..+ -
T Consensus 70 eqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaA 149 (188)
T PF05335_consen 70 EQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAA 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333444444444444444444444444544455555444444444444433332 2
Q ss_pred HHHHHHHHHhHHHHHHHHH
Q 010847 460 ENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 460 ~~e~~~~~~~~~~~~~~~~ 478 (499)
.++.+.|.+++.....+++
T Consensus 150 k~Rve~L~~QL~~Ar~D~~ 168 (188)
T PF05335_consen 150 KRRVEELQRQLQAARADYE 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555554444443
No 339
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.60 E-value=4.6 Score=31.86 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=13.3
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhh
Q 010847 406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCF 440 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (499)
.+-.++.+++..+.+..+|-..++-+++.+++++.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444333
No 340
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.59 E-value=25 Score=31.97 Aligned_cols=42 Identities=2% Similarity=0.207 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (499)
++.+..........+.........++.++.+.+....+++..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433334444444445555666666666666666544
No 341
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.50 E-value=17 Score=35.97 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=7.3
Q ss_pred hhHHHHHHhhccchHHHHH
Q 010847 406 RFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~ 424 (499)
+|...+.+.+.+..+..++
T Consensus 297 KL~~~l~~~~~~~~~ltqq 315 (521)
T KOG1937|consen 297 KLMGKLAELNKQMEELTQQ 315 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 342
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.47 E-value=10 Score=32.81 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccc--hHHHHHHHHHHHHHHHhhhhhhHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTH--SELSKELSSVQGQLVAERSRCFKL 442 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 442 (499)
+..+..+...+.+.+...+.+...|+.++..+.... ++....+.+++.++..++.++..+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555666666666655544 233333444444444433333333
No 343
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=82.46 E-value=37 Score=30.52 Aligned_cols=45 Identities=24% Similarity=0.195 Sum_probs=23.7
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
.++++-++.+++++-+.++.+++.++++-.-|-.+..|+..+|..
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~ 136 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELEL 136 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 444444555555555555666666655555555555555444443
No 344
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.36 E-value=14 Score=32.59 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847 454 ESSQTIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 454 ~~~~~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.++..++...+.+.++....+.+.+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777776666655
No 345
>PRK13684 Ycf48-like protein; Provisional
Probab=82.33 E-value=51 Score=32.12 Aligned_cols=140 Identities=10% Similarity=0.062 Sum_probs=67.8
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEE-ECCCCeeEEeeecCCCCCCCccce
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFL-DLETMTWDAVEVTQTPPAPRYDHS 189 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~y-d~~t~~W~~~~~~~~~p~~r~~~~ 189 (499)
+++=+-.-.+|..+.+ +..-.-+.+....+..|+..|..+ .++.- |....+|..+.. +..+.-.+
T Consensus 154 i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G------~i~~s~~~gg~tW~~~~~----~~~~~l~~ 219 (334)
T PRK13684 154 IYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG------NFYSTWEPGQTAWTPHQR----NSSRRLQS 219 (334)
T ss_pred EEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc------eEEEEcCCCCCeEEEeeC----CCccccee
Confidence 5554445568998852 222233344444444444433221 23322 334467988753 33455555
Q ss_pred EEEEcCcEEEEEcCCCCCCCCCcEEEEE-C-CCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeCCCCCCCcceEEEE
Q 010847 190 AALHANRYLIVFGGCSHSIFFNDLHVLD-L-QTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGGGDNNNGCQETIVL 266 (499)
Q Consensus 190 ~~~~~~~~l~v~GG~~~~~~~~~i~~~d-~-~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~ 266 (499)
++...++.++++|..+ ..++. . .-.+|+.+.. +........++++.. ++.++++|... -++.-
T Consensus 220 i~~~~~g~~~~vg~~G-------~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~G~~G------~v~~S 285 (334)
T PRK13684 220 MGFQPDGNLWMLARGG-------QIRFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAGGGNG------TLLVS 285 (334)
T ss_pred eeEcCCCCEEEEecCC-------EEEEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEEcCCC------eEEEe
Confidence 5555566688887532 22332 2 2347997531 111111122333333 45677776521 13333
Q ss_pred ECCCCceEEecc
Q 010847 267 NMTKLAWSILTS 278 (499)
Q Consensus 267 d~~~~~W~~l~~ 278 (499)
.....+|..+..
T Consensus 286 ~d~G~tW~~~~~ 297 (334)
T PRK13684 286 KDGGKTWEKDPV 297 (334)
T ss_pred CCCCCCCeECCc
Confidence 334568998753
No 346
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=82.32 E-value=6.7 Score=41.47 Aligned_cols=8 Identities=38% Similarity=0.223 Sum_probs=3.1
Q ss_pred cccccCCC
Q 010847 482 SVQTQGSG 489 (499)
Q Consensus 482 ~~q~q~~~ 489 (499)
.+|...++
T Consensus 298 l~~ll~sg 305 (1064)
T KOG1144|consen 298 LKQLLASG 305 (1064)
T ss_pred HHHHHhcC
Confidence 33334444
No 347
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=82.31 E-value=34 Score=30.06 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSV 428 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 428 (499)
.+.+++..+...+........+....+.+.+..+.+.+.+.++.
T Consensus 52 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~i 95 (184)
T CHL00019 52 LLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEI 95 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555544444444444444444555555555554444433
No 348
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.30 E-value=32 Score=31.52 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=23.7
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (499)
++..++.+..+.+.....+.....+...|..+|+..+.+++...+.
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkR 155 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKR 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555554444443
No 349
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=82.18 E-value=6.1 Score=41.70 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHhH
Q 010847 444 AQIAELQKMLESS 456 (499)
Q Consensus 444 ~~~~e~~~~l~~~ 456 (499)
....++++++..+
T Consensus 329 ~~~~~l~~eL~~l 341 (563)
T TIGR00634 329 EYAEKIKEELDQL 341 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 350
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=82.09 E-value=42 Score=31.16 Aligned_cols=40 Identities=5% Similarity=0.184 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE 424 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 424 (499)
.+++++..+...+.+......+.++..++.+.++++.+++
T Consensus 33 ~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~e 72 (250)
T PRK14474 33 VMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQ 72 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333333344444444444333
No 351
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.02 E-value=7.3 Score=36.50 Aligned_cols=32 Identities=28% Similarity=0.211 Sum_probs=13.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 431 QLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
+++.++..+.+|+-++++++.+++++++.+++
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444443333
No 352
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=81.90 E-value=35 Score=33.56 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 010847 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK 451 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 451 (499)
...++.+++..-++..+.+.++.+.+++.......+.++.+
T Consensus 261 Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~ 301 (359)
T PF10498_consen 261 EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTR 301 (359)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33334444444444444444444444444444333333333
No 353
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=81.89 E-value=0.44 Score=48.19 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHH
Q 010847 379 VRTDIDAIKEDKRV 392 (499)
Q Consensus 379 ~~~~~~~l~~~~~~ 392 (499)
|..||..||++.+.
T Consensus 374 YEqEI~~LkErL~~ 387 (495)
T PF12004_consen 374 YEQEIQSLKERLRM 387 (495)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555554443
No 354
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.85 E-value=12 Score=41.16 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHhhhhhHHHHHH-hhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847 400 VRTENSRFREKIDE-VNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 400 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.+.+.+.++.++++ .++-......+++..+.....++.++.+++.++.++-+...+...|+++.+..++..+.+.+.++
T Consensus 321 l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 321 AKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554443 22222334445555666666667777777777777777777777777777777777776666666
Q ss_pred Hhhccc
Q 010847 479 RATSVQ 484 (499)
Q Consensus 479 ~~~~~q 484 (499)
+++..+
T Consensus 401 e~~~~~ 406 (754)
T TIGR01005 401 QAASRQ 406 (754)
T ss_pred HHHHhh
Confidence 554333
No 355
>PRK02119 hypothetical protein; Provisional
Probab=81.77 E-value=9.7 Score=27.70 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=5.3
Q ss_pred HHHHHHhHHHHHHH
Q 010847 463 VQILRQQKSAFEQE 476 (499)
Q Consensus 463 ~~~~~~~~~~~~~~ 476 (499)
+..+++++..+.+.
T Consensus 39 id~L~~ql~~L~~r 52 (73)
T PRK02119 39 IDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 356
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=81.72 E-value=25 Score=36.04 Aligned_cols=9 Identities=0% Similarity=0.047 Sum_probs=4.7
Q ss_pred CCEEEEEcc
Q 010847 92 GTKLLILGG 100 (499)
Q Consensus 92 ~~~iyv~GG 100 (499)
.+.+++.++
T Consensus 37 ~~~v~~~~~ 45 (607)
T KOG0240|consen 37 ENTVVLETT 45 (607)
T ss_pred cceEEEecc
Confidence 445555554
No 357
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=81.67 E-value=28 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 010847 458 TIENEVQILRQQKSAFEQEMERAT 481 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~~~ 481 (499)
+++++++++-++..++++++++..
T Consensus 112 ~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 112 KLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 358
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.48 E-value=16 Score=37.65 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=8.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHH
Q 010847 432 LVAERSRCFKLEAQIAELQKM 452 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~e~~~~ 452 (499)
+...+.+...++.++..+.++
T Consensus 157 ~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 157 INTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 359
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=81.40 E-value=35 Score=29.63 Aligned_cols=49 Identities=10% Similarity=0.188 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ 431 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 431 (499)
...+.+++..+...+........+....+.+.+..+++..++.+++..+
T Consensus 45 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~ 93 (174)
T PRK07352 45 GKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD 93 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666665555555555555566666666666666665554443
No 360
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=81.36 E-value=10 Score=36.83 Aligned_cols=28 Identities=11% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847 425 LSSVQGQLVAERSRCFKLEAQIAELQKM 452 (499)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 452 (499)
-++++.-=.++++.|.++...+.+.+.+
T Consensus 162 aeELEgyCsqLk~nCrkVt~SVedaEiK 189 (558)
T PF15358_consen 162 AEELEGYCSQLKENCRKVTRSVEDAEIK 189 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3333333444445555555555444443
No 361
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=81.20 E-value=13 Score=29.46 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH---------------------------------HHHHHH
Q 010847 417 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------------------------TIENEV 463 (499)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~---------------------------------~~~~e~ 463 (499)
++++.-.+++..+++++........++.++.|.+.-+.++. .++.++
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHhhccccc
Q 010847 464 QILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
..+.++++.++++++++++..++
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 362
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.17 E-value=43 Score=33.03 Aligned_cols=8 Identities=0% Similarity=0.119 Sum_probs=2.9
Q ss_pred HHHhhccc
Q 010847 411 IDEVNSTH 418 (499)
Q Consensus 411 ~~~~~~~~ 418 (499)
++.++.++
T Consensus 306 ~qqleeen 313 (502)
T KOG0982|consen 306 DQQLEEEN 313 (502)
T ss_pred HHHHHHHH
Confidence 33333333
No 363
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=81.15 E-value=14 Score=35.62 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.1
Q ss_pred hhhhhHHHHHH
Q 010847 436 RSRCFKLEAQI 446 (499)
Q Consensus 436 ~~~~~~~~~~~ 446 (499)
+.+..++...+
T Consensus 45 kkrLk~L~~sL 55 (330)
T PF07851_consen 45 KKRLKELKKSL 55 (330)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 364
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=81.12 E-value=18 Score=37.81 Aligned_cols=15 Identities=0% Similarity=0.479 Sum_probs=6.4
Q ss_pred HhhhhhHHHHHHhhc
Q 010847 402 TENSRFREKIDEVNS 416 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~ 416 (499)
.+.+.+++.+++++.
T Consensus 191 ~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 191 QDLEEYKKRLEAIKK 205 (555)
T ss_pred hhHHHHHHHHHHHHh
Confidence 344444444444433
No 365
>PRK10698 phage shock protein PspA; Provisional
Probab=81.04 E-value=33 Score=31.25 Aligned_cols=45 Identities=9% Similarity=0.194 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHH
Q 010847 381 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL 425 (499)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 425 (499)
.-++.+.+...++...+.........+++++...+....++++.-
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555544555555566667777777777776666553
No 366
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.02 E-value=15 Score=43.24 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=14.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010847 429 QGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQIL 466 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~ 466 (499)
+...+..++.+..++.+++++++++..+.....+.+++
T Consensus 230 q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l 267 (1311)
T TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444443333333333333
No 367
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.00 E-value=8.1 Score=34.82 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhhhH
Q 010847 383 IDAIKEDKRVLELSLT 398 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~ 398 (499)
|++|+++...++..+.
T Consensus 227 i~~lkeeia~Lkk~L~ 242 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLH 242 (305)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6677777666555444
No 368
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=80.96 E-value=7.6 Score=37.63 Aligned_cols=89 Identities=17% Similarity=0.229 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH--HH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT--IE 460 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~--~~ 460 (499)
++.|+.+=..+.+.++.-+++.++|+..-.+++..-...++..+..+..--.++....-||.+++-++++||.... .+
T Consensus 141 Vq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~prrqe 220 (558)
T PF15358_consen 141 VQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDETPRRQE 220 (558)
T ss_pred HHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccCcchhh
Confidence 4455555555556666555666666555555544444444444443333333344455566666666666666553 24
Q ss_pred HHHHHHHHhHH
Q 010847 461 NEVQILRQQKS 471 (499)
Q Consensus 461 ~e~~~~~~~~~ 471 (499)
.+.+++.|+++
T Consensus 221 ~e~qELeqkle 231 (558)
T PF15358_consen 221 AEWQELEQKLE 231 (558)
T ss_pred hhHHHHHHHHh
Confidence 55555555444
No 369
>PRK14011 prefoldin subunit alpha; Provisional
Probab=80.96 E-value=27 Score=29.31 Aligned_cols=13 Identities=8% Similarity=0.463 Sum_probs=4.9
Q ss_pred hhhHHHHHHhhcc
Q 010847 405 SRFREKIDEVNST 417 (499)
Q Consensus 405 ~~l~~~~~~~~~~ 417 (499)
..|.+.++.++..
T Consensus 20 e~L~~si~~L~~a 32 (144)
T PRK14011 20 QKLQEELSSIDMM 32 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 370
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=80.87 E-value=26 Score=28.09 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHHHhhccch
Q 010847 387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHS 419 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 419 (499)
+...+.+....+....+.+-|+..++....+..
T Consensus 29 ~~~e~~ld~e~Eai~~q~agLk~LL~~~r~e~~ 61 (147)
T PRK15335 29 QDEDRGLQAEEEAILEQIAGLKLLLDTLRAENR 61 (147)
T ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHhchhcc
Confidence 333333333333333444555555555444433
No 371
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=80.77 E-value=36 Score=31.63 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 010847 420 ELSKELSSVQGQLVAERSRCFKLEAQIAELQKML 453 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l 453 (499)
...+.++..+.+++.+.+.+.+.+.+++|+++++
T Consensus 197 ~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i 230 (269)
T PF05278_consen 197 EKDRKLELKKEELEELEEELKQKEKEVKEIKERI 230 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444
No 372
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.74 E-value=25 Score=30.22 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhh
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSR 438 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (499)
+...+..+.+++..+...++....+.+.++..+..+++.++.-.++.+.+-.+++.
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~ 131 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI 131 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 55667777788888888888888888887777777666555544555555544443
No 373
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=80.73 E-value=3.9 Score=41.12 Aligned_cols=50 Identities=26% Similarity=0.407 Sum_probs=26.1
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010847 436 RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT 485 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~ 485 (499)
++++.+++.++.+++.++.+..+..+++.++.+|+++++++++++++...
T Consensus 248 ~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 248 QEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445556666666666666666665554433
No 374
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=80.53 E-value=23 Score=33.98 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVA 434 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (499)
+..++..++...+.++...++++...+.....
T Consensus 136 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 167 (301)
T PF14362_consen 136 QIARLDAEIAALQAEIDQLEKEIDRAQQEAQC 167 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555554444444443333
No 375
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.49 E-value=22 Score=30.07 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHhhhhhhHHHHHH
Q 010847 428 VQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~ 446 (499)
++.++.+++.+.+.|+.++
T Consensus 109 l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 109 LKNQNESLQKRNEELEKEL 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 376
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.25 E-value=24 Score=36.15 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=7.2
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 010847 461 NEVQILRQQKSAFEQEME 478 (499)
Q Consensus 461 ~e~~~~~~~~~~~~~~~~ 478 (499)
+++.+.+.++...+.+++
T Consensus 291 ~~l~~~~~~l~~~~~~l~ 308 (457)
T TIGR01000 291 QEITDLNQKLLELESKIK 308 (457)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444443
No 377
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=80.12 E-value=59 Score=31.37 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=68.1
Q ss_pred ceEEEEECCCC-----cEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCe-eEEeeecCCCC
Q 010847 109 MIVRFIDLETN-----LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMT-WDAVEVTQTPP 182 (499)
Q Consensus 109 ~~~~~yd~~t~-----~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~p 182 (499)
..+++|+.... +++.+.. .+..-.-++++.++++|++.-| +.+++|++...+ +.......
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~---~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~--- 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS---TEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYD--- 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE---EEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE----
T ss_pred cEEEEEEEEcccccceEEEEEEE---EeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheec---
Confidence 45899998885 5665542 2222335667778999777655 358888887777 77776532
Q ss_pred CCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE-CCEEEEEeC
Q 010847 183 APRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI-DENWYIVGG 253 (499)
Q Consensus 183 ~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~-~~~l~v~GG 253 (499)
.+....++..+ ++ .+++|-...+ -.++.|+....+-..+. .-+.++.-.++..+ ++. .++++
T Consensus 128 ~~~~i~sl~~~-~~-~I~vgD~~~s---v~~~~~~~~~~~l~~va---~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 128 SPFYITSLSVF-KN-YILVGDAMKS---VSLLRYDEENNKLILVA---RDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp BSSSEEEEEEE-TT-EEEEEESSSS---EEEEEEETTTE-EEEEE---EESS-BEEEEEEEE-SSS-EEEEE
T ss_pred ceEEEEEEecc-cc-EEEEEEcccC---EEEEEEEccCCEEEEEE---ecCCCccEEEEEEecCCc-EEEEE
Confidence 23334444444 55 4555543221 13456676555566553 23345665566666 555 44444
No 378
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.08 E-value=29 Score=30.25 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=10.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHh
Q 010847 433 VAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 433 ~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
...+++...+..+...+++++..
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~ 102 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKD 102 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 379
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.99 E-value=25 Score=36.46 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847 421 LSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
.+.++..++.++..+++...+++.++..+.....+...|+++.+..++.-+.+.+.++++
T Consensus 322 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 322 AEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444455555554444444444455555544444444444444443
No 380
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=79.96 E-value=58 Score=31.21 Aligned_cols=256 Identities=11% Similarity=0.127 Sum_probs=106.5
Q ss_pred CCCCeEEcccCCCCCCcccc-----eEEEEcCCCCCcccCcEEEEEcC-CCceEEeeeCcccccCccccCCCCCCCCCcc
Q 010847 11 PYDLWVTLPVSGARPSPRYK-----KLYIVGGSRNGRFLSDVQVFDLR-SLAWSNLRLETELDADKTEDSGLLEVLPPMS 84 (499)
Q Consensus 11 ~~~~W~~~~~~~~~p~~r~~-----~l~~~GG~~~~~~~~~~~~yd~~-t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~ 84 (499)
....|..+..+...|...-. .-|++|-. ........ -.+|......... +....
T Consensus 4 ~~~~W~~v~l~t~~~l~dV~F~d~~~G~~VG~~-------g~il~T~DGG~tW~~~~~~~~~-------------~~~~~ 63 (302)
T PF14870_consen 4 SGNSWQQVSLPTDKPLLDVAFVDPNHGWAVGAY-------GTILKTTDGGKTWQPVSLDLDN-------------PFDYH 63 (302)
T ss_dssp SS--EEEEE-S-SS-EEEEEESSSS-EEEEETT-------TEEEEESSTTSS-EE-----S------------------E
T ss_pred cCCCcEEeecCCCCceEEEEEecCCEEEEEecC-------CEEEEECCCCccccccccCCCc-------------cceee
Confidence 46789988854433221111 55666542 11111111 2469887643210 11223
Q ss_pred ceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcCcCCCCCccCcEE
Q 010847 85 DHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVARGGHSVTLV-GSRLIIFGGEDRSRKLLNDVH 163 (499)
Q Consensus 85 ~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~v~ 163 (499)
.+++...++..|+.|.. ..++.-.=.-.+|++++.. .+.+-..+.+..+ ++.++++|.. ..++
T Consensus 64 l~~I~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy 127 (302)
T PF14870_consen 64 LNSISFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------GAIY 127 (302)
T ss_dssp EEEEEEETTEEEEEEET-------TEEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT---------EE
T ss_pred EEEEEecCCceEEEcCC-------ceEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------CcEE
Confidence 33444568889988742 1133333345689998642 2233333444444 5577777643 2355
Q ss_pred EEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEE-EEECCCCceEecccCCCCCCcCcccEEE
Q 010847 164 FLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLH-VLDLQTNEWSQPEIKGDLVTGRAGHAGI 242 (499)
Q Consensus 164 ~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~-~~d~~~~~W~~~~~~~~~p~~r~~~~~~ 242 (499)
.=.-.-.+|+.+... ..-....+....++.+++++-.+ .++ ..|+-...|.... .+..|.-.++.
T Consensus 128 ~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G------~~~~s~~~G~~~w~~~~----r~~~~riq~~g 193 (302)
T PF14870_consen 128 RTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRG------NFYSSWDPGQTTWQPHN----RNSSRRIQSMG 193 (302)
T ss_dssp EESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTS------SEEEEE-TT-SS-EEEE------SSS-EEEEE
T ss_pred EeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECcc------cEEEEecCCCccceEEc----cCccceehhce
Confidence 444456689987641 12222233344577666666432 344 4566667798853 34455555555
Q ss_pred EEC-CEEEEEeCCCCCCCcceEEEEE--CCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEE
Q 010847 243 TID-ENWYIVGGGDNNNGCQETIVLN--MTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFV 319 (499)
Q Consensus 243 ~~~-~~l~v~GG~~~~~~~~~~~~~d--~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~ 319 (499)
... +.++++.- .+ .+..-+ -...+|.+-.. |...-+..+..+.....+.+++.||.. .+++
T Consensus 194 f~~~~~lw~~~~-Gg-----~~~~s~~~~~~~~w~~~~~-----~~~~~~~~~ld~a~~~~~~~wa~gg~G-----~l~~ 257 (302)
T PF14870_consen 194 FSPDGNLWMLAR-GG-----QIQFSDDPDDGETWSEPII-----PIKTNGYGILDLAYRPPNEIWAVGGSG-----TLLV 257 (302)
T ss_dssp E-TTS-EEEEET-TT-----EEEEEE-TTEEEEE---B------TTSS--S-EEEEEESSSS-EEEEESTT------EEE
T ss_pred ecCCCCEEEEeC-Cc-----EEEEccCCCCccccccccC-----CcccCceeeEEEEecCCCCEEEEeCCc-----cEEE
Confidence 554 45666531 11 233333 34456776221 222334444444555556788888864 3544
Q ss_pred EECCCCCCCCCcc
Q 010847 320 MRLKPRDIPRPKI 332 (499)
Q Consensus 320 ~~~~~~~W~~~~~ 332 (499)
-.-..++|++...
T Consensus 258 S~DgGktW~~~~~ 270 (302)
T PF14870_consen 258 STDGGKTWQKDRV 270 (302)
T ss_dssp ESSTTSS-EE-GG
T ss_pred eCCCCccceECcc
Confidence 4456678877654
No 381
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=79.90 E-value=39 Score=29.24 Aligned_cols=7 Identities=29% Similarity=0.733 Sum_probs=3.3
Q ss_pred EEEEcCC
Q 010847 303 LVAFGGY 309 (499)
Q Consensus 303 l~v~GG~ 309 (499)
+++.||.
T Consensus 54 ~il~~~~ 60 (225)
T KOG4848|consen 54 IILAGGM 60 (225)
T ss_pred HHHcCCC
Confidence 3444554
No 382
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=79.74 E-value=25 Score=29.52 Aligned_cols=22 Identities=5% Similarity=0.182 Sum_probs=9.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhHH
Q 010847 436 RSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 436 ~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
...+...+..+...+.++...+
T Consensus 77 ~~~I~~q~~~v~~~~~~ve~~r 98 (147)
T PRK05689 77 EKAITQQRQQLTQWTQKVDNAR 98 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 383
>PRK09343 prefoldin subunit beta; Provisional
Probab=79.66 E-value=16 Score=29.58 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH---------------------------------H
Q 010847 412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------------------------T 458 (499)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~---------------------------------~ 458 (499)
+.+..+++..-.+++..+++++......+.++.++.|.+.-+.++. .
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ 82 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKEL 82 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 459 IENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
++.++..+.++++.+++.+++.+...++
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=79.52 E-value=52 Score=30.45 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH
Q 010847 385 AIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS 426 (499)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 426 (499)
.+.+++..+...+........+......+.+..+++.+++.+
T Consensus 33 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 33 AMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444444444444444444444444444444444433
No 385
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=79.46 E-value=6.5 Score=36.56 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=16.5
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVAE 435 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (499)
.....|+++-..+...+..++.++.+.+.+|+..
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555444444444
No 386
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=79.40 E-value=35 Score=37.55 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 010847 457 QTIENEVQILRQQKSAFEQE 476 (499)
Q Consensus 457 ~~~~~e~~~~~~~~~~~~~~ 476 (499)
+++...+..++.+++.++.+
T Consensus 581 kk~idaL~alrrhke~LE~e 600 (1195)
T KOG4643|consen 581 KKYIDALNALRRHKEKLEEE 600 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555
No 387
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=79.35 E-value=35 Score=28.33 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
...+.+++..+...+.+......+....+.+.+..+++...+..++..
T Consensus 31 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~ 78 (140)
T PRK07353 31 GKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIA 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555556665555555444433
No 388
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=79.25 E-value=63 Score=31.18 Aligned_cols=173 Identities=13% Similarity=0.091 Sum_probs=87.0
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
.||++... +...--..+.+|+.+|+.+.+...... +.+| .|.++.-++..++.+-+.. ..
T Consensus 53 ~LY~v~~~-~~~ggvaay~iD~~~G~Lt~ln~~~~~----------g~~p----~yvsvd~~g~~vf~AnY~~-----g~ 112 (346)
T COG2706 53 HLYVVNEP-GEEGGVAAYRIDPDDGRLTFLNRQTLP----------GSPP----CYVSVDEDGRFVFVANYHS-----GS 112 (346)
T ss_pred EEEEEEec-CCcCcEEEEEEcCCCCeEEEeeccccC----------CCCC----eEEEECCCCCEEEEEEccC-----ce
Confidence 67777653 222333567778888888887654321 2222 4444444444444333322 23
Q ss_pred EEEEECCCC--cEEEe---ecCCCCCCCC-----cceEEEEECC-EEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecC
Q 010847 111 VRFIDLETN--LCGVM---ETSGKVPVAR-----GGHSVTLVGS-RLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQ 179 (499)
Q Consensus 111 ~~~yd~~t~--~W~~~---~~~g~~p~~r-----~~~~~~~~~~-~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~ 179 (499)
+-+|-+.++ -|..+ .-+|..|.+| ..++-..-.+ .|++. -. -.+.+..|++..+.-+...+.-
T Consensus 113 v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~-DL-----G~Dri~~y~~~dg~L~~~~~~~ 186 (346)
T COG2706 113 VSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP-DL-----GTDRIFLYDLDDGKLTPADPAE 186 (346)
T ss_pred EEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe-ec-----CCceEEEEEcccCccccccccc
Confidence 666655332 23222 2234445555 2222222234 44443 11 2567899998877665544321
Q ss_pred CCCCCCccc-eEEEE-cCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCC
Q 010847 180 TPPAPRYDH-SAALH-ANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVT 234 (499)
Q Consensus 180 ~~p~~r~~~-~~~~~-~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~ 234 (499)
.+ +-++. -++.+ +.+.+|++.-.++. =++|.||......+.+.....+|.
T Consensus 187 -v~-~G~GPRHi~FHpn~k~aY~v~EL~st---V~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 187 -VK-PGAGPRHIVFHPNGKYAYLVNELNST---VDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred -cC-CCCCcceEEEcCCCcEEEEEeccCCE---EEEEEEcCCCceEEEeeeeccCcc
Confidence 11 11111 12233 35678888764422 257777877788888765444443
No 389
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=79.24 E-value=23 Score=37.65 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010847 472 AFEQEME 478 (499)
Q Consensus 472 ~~~~~~~ 478 (499)
.++++++
T Consensus 605 rleEE~e 611 (698)
T KOG0978|consen 605 RLEEELE 611 (698)
T ss_pred HHHHHHH
Confidence 3334433
No 390
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=79.03 E-value=35 Score=34.76 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHH
Q 010847 386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKEL 425 (499)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 425 (499)
+++++..+...+.+......++.+..++.+..+++...+-
T Consensus 30 l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea 69 (445)
T PRK13428 30 MAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEA 69 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333334333344444444444333
No 391
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=78.98 E-value=26 Score=38.74 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=21.8
Q ss_pred HHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 010847 400 VRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ 445 (499)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (499)
..++...+...+.+....+.+..++++....++..++++..+++..
T Consensus 709 ~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 709 NELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555554444444433
No 392
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=37 Score=28.43 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 430 GQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+..+-+++++++++..++.+++.++++-
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~ 121 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELA 121 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544433
No 393
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=78.96 E-value=7.8 Score=30.68 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFK 441 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (499)
+...+-.++.+++..+.+..+|-..++-+++.+++++.+
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 394
>PRK11519 tyrosine kinase; Provisional
Probab=78.81 E-value=22 Score=38.88 Aligned_cols=31 Identities=19% Similarity=0.245 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 010847 441 KLEAQIAELQKMLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 441 ~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~ 471 (499)
.+++++.+++.+...+.+.+.+..+++++.+
T Consensus 350 ~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~ 380 (719)
T PRK11519 350 ALEDEKAKLNGRVTAMPKTQQEIVRLTRDVE 380 (719)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3334444444443333344444444444443
No 395
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=78.68 E-value=45 Score=29.25 Aligned_cols=45 Identities=9% Similarity=0.175 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHH
Q 010847 386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQG 430 (499)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 430 (499)
+.+++..+...+.+......+....+.+.+.++.+.+.+.+++..
T Consensus 56 L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~ 100 (184)
T PRK13455 56 LDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVA 100 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444455555555555555444433
No 396
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.60 E-value=35 Score=37.98 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
+.+..+++.+..+..++++.+.........|+.+.+..+..++...+++...+.++++.+.++.+.+.-+.+..+-+..+
T Consensus 451 eele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l 530 (1041)
T KOG0243|consen 451 EELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKL 530 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 010847 457 QTIENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 457 ~~~~~e~~~~~~~~~~~~~~~ 477 (499)
.++..+++...++-+.-...+
T Consensus 531 ~~~a~~l~~~~~~s~~d~s~l 551 (1041)
T KOG0243|consen 531 VDRATKLRRSLEESQDDLSSL 551 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 397
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=78.54 E-value=17 Score=38.65 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI-AELQKMLESSQ 457 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~l~~~~ 457 (499)
++.+++..-.++.+++..-.+...+....+.+ ++.+.++.....++++.++++++.-...++++..+ |+.+.+++...
T Consensus 966 ~daeLe~~~ael~eleqk~le~~eDea~aRh~-kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~e 1044 (1424)
T KOG4572|consen 966 IDAELEKEFAELIELEQKALECKEDEAFARHE-KEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDE 1044 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q ss_pred -----------HHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010847 458 -----------TIENEVQILRQQKSAFEQEMERATSVQT 485 (499)
Q Consensus 458 -----------~~~~e~~~~~~~~~~~~~~~~~~~~~q~ 485 (499)
+++.+......+.......+.+.+.+|.
T Consensus 1045 fka~d~Sd~r~kie~efAa~eaemdeik~~~~edrakqk 1083 (1424)
T KOG4572|consen 1045 FKALDESDPRAKIEDEFAAIEAEMDEIKDGKCEDRAKQK 1083 (1424)
T ss_pred hhhccccCcchhHHHHHHHHHhhhhhhhhhhhhhHHHHH
No 398
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=78.54 E-value=56 Score=31.38 Aligned_cols=100 Identities=14% Similarity=0.263 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhh--------------ccchHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVN--------------STHSELSKELSSVQGQLVAERSRCFKLEA 444 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (499)
+..+++.-+.++..+....++.+.....++....+.. .....+..-+.+.++++.+++..+..+.+
T Consensus 14 L~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrq 93 (319)
T PF09789_consen 14 LSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQ 93 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHH-----------------------HHHHHHHHHHHhHHHHHHHHH
Q 010847 445 QIAELQKMLESSQ-----------------------TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 445 ~~~e~~~~l~~~~-----------------------~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.+.|++...+-+. .+-.+++.+..+.++++.+++
T Consensus 94 kl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q 150 (319)
T PF09789_consen 94 KLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ 150 (319)
T ss_pred HHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
No 399
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.52 E-value=41 Score=29.55 Aligned_cols=96 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHhHH-----------
Q 010847 390 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQK-MLESSQ----------- 457 (499)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~l~~~~----------- 457 (499)
+..+-..+........+-+.-++...++++++.+...+.....++.+.+.+.+..++.|.++ ++.+..
T Consensus 63 ~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~ 142 (222)
T KOG3215|consen 63 RKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDC 142 (222)
T ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q ss_pred -----------HHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 458 -----------TIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 458 -----------~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
.+.++++++......++..++ ++..|.+
T Consensus 143 p~RsEt~k~l~el~keleel~~~~~s~~~kle-lrRkqf~ 181 (222)
T KOG3215|consen 143 PARSETDKDLNELKKELEELDDLNNSTETKLE-LRRKQFK 181 (222)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhhcch
No 400
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.51 E-value=24 Score=28.77 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010847 391 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 467 (499)
Q Consensus 391 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~ 467 (499)
..++..........+.|.++|+.+...+.+..+-.++.+++....++.+......+..+++-.+.++....+++.-|
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 401
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=78.36 E-value=28 Score=35.48 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 010847 387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQIL 466 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~ 466 (499)
+.++..-.+.+.....+..+-+..-.+.++.....++.+++.+.+++.++++.+.++..+..++.|-|.++...=|++.|
T Consensus 596 qdRks~srekr~~~sfdk~kE~Rr~Re~eer~RirE~rerEqR~~a~~ERee~eRl~~erlrle~qRQrLERErmErERL 675 (940)
T KOG4661|consen 596 QDRKSRSREKRRERSFDKRKEERRRREAEERQRIREEREREQRRKAAVEREELERLKAERLRLERQRQRLERERMERERL 675 (940)
T ss_pred hhhHHHHHHhhhhhhHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHhhcc
Q 010847 467 RQQKSAFEQEMERATSV 483 (499)
Q Consensus 467 ~~~~~~~~~~~~~~~~~ 483 (499)
..+.-..++++.+.+++
T Consensus 676 EreRM~ve~eRr~eqeR 692 (940)
T KOG4661|consen 676 ERERMKVEEERRDEQER 692 (940)
T ss_pred HHHHHHHHHhhcchhhh
No 402
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=78.24 E-value=13 Score=31.82 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=0.0
Q ss_pred HhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH--
Q 010847 394 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKS-- 471 (499)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~-- 471 (499)
...+.....-.-.++.+++.++....+.-..+...+++.-.+++++.++++.+.-++.++.++-.+-+..+.-+.++.
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred ---HHHHHHHHhhcccccCC
Q 010847 472 ---AFEQEMERATSVQTQGS 488 (499)
Q Consensus 472 ---~~~~~~~~~~~~q~q~~ 488 (499)
+...+=++++++...++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (189)
T TIGR02132 151 IQKQIKTQGEQLQAQLLEKQ 170 (189)
T ss_pred HHHHHhhhHHHHHHHHHHHH
No 403
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=78.07 E-value=28 Score=37.88 Aligned_cols=105 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ- 457 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~- 457 (499)
+..+.+.++..+..++..+.....+.+.++.++++.+..+.+++.++...++-.......+.-.+.....++-++..++
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~ 673 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEA 673 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred ---HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 458 ---TIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 458 ---~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
++..++..|..+++......++..+.
T Consensus 674 E~~~l~~Ki~~Le~Ele~er~~~~e~~~k 702 (769)
T PF05911_consen 674 EAEELQSKISSLEEELEKERALSEELEAK 702 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhH
No 404
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=77.95 E-value=30 Score=26.84 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
++|-.+-..+.....-.+.-+.+-+.....+..++...+..+...+++++.+..+-+.|..++..++.++....
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 405
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=77.76 E-value=42 Score=28.42 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHhHH-HH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQ-TI 459 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~l~~~~-~~ 459 (499)
...+.+++..+...+........+....+.+.+..+.+...+..+...+...+ +.+...+..-..+.++..+..+ .+
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i 109 (156)
T PRK05759 30 MKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEI 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 010847 460 ENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 460 ~~e~~~~~~~~~~~~~~~ 477 (499)
+.+.+....++.+.--++
T Consensus 110 ~~e~~~a~~~l~~~~~~l 127 (156)
T PRK05759 110 EQERKRAREELRKQVADL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
No 406
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=77.75 E-value=2.4 Score=34.08 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010847 391 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQK 470 (499)
Q Consensus 391 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~ 470 (499)
..+++.+.+...+..+-.+.....-.++..+.+.|-+-...+..+...+.+++....+++++|..+...+++++.+...+
T Consensus 18 k~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~l 97 (116)
T PF05064_consen 18 KTLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPL 97 (116)
T ss_dssp -------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 010847 471 SAFEQEM 477 (499)
Q Consensus 471 ~~~~~~~ 477 (499)
+..-+.+
T Consensus 98 E~~~~~l 104 (116)
T PF05064_consen 98 EKQVEKL 104 (116)
T ss_dssp CCTT---
T ss_pred HHHHHHH
No 407
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.71 E-value=35 Score=37.18 Aligned_cols=110 Identities=12% Similarity=0.237 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
..++.+++.|..+..+....+.+.......+..+......++.+....+......+..++.+++.|+..+.+..+++...
T Consensus 339 ~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~ 418 (775)
T PF10174_consen 339 EMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEE 418 (775)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-HHH------------HHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 457 Q-TIE------------NEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 457 ~-~~~------------~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
. .+. .+++.....++.+...+++.+.+..+
T Consensus 419 k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~ 461 (775)
T PF10174_consen 419 KERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEK 461 (775)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 408
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=77.70 E-value=12 Score=31.17 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010847 423 KELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 469 (499)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~ 469 (499)
++++.++.+....++++++..++++|+..|.-..+.|-++.+++.++
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 409
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.68 E-value=33 Score=40.60 Aligned_cols=104 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHH-----HHHHHHH
Q 010847 378 DVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQ-----IAELQKM 452 (499)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~~~~ 452 (499)
.++.+.....+..+++...+.+...+...|+..+.+...+++....++..++.+....+.|.+.+..+ ..+.++-
T Consensus 1233 ~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL 1312 (1822)
T KOG4674|consen 1233 VLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKL 1312 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 010847 453 LESSQTIENEVQILRQQKSAFEQEMERAT 481 (499)
Q Consensus 453 l~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 481 (499)
...+..|.+++...+...+.+...+.+.+
T Consensus 1313 ~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1313 KSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 410
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=77.60 E-value=47 Score=30.15 Aligned_cols=101 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh---------hhhhhHHHHHHHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE---------RSRCFKLEAQIAELQKML 453 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~~~~l 453 (499)
+.++......+...+.+.+....+.+..+..........++++.+.+...+.. ..++.-...-+.+.+...
T Consensus 19 ~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~ 98 (219)
T TIGR02977 19 LDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQ 98 (219)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 454 ESSQTIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 454 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
+....++.++.++....+++...+.+++..
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~k 128 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAK 128 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 411
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=77.55 E-value=26 Score=25.77 Aligned_cols=74 Identities=8% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhccch-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH
Q 010847 404 NSRFREKIDEVNSTHS-ELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMER 479 (499)
Q Consensus 404 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~ 479 (499)
...+...+..+..... +....++.++..+.+..+-+.+++.+++.+ --..-..+..++..+..++..+.+++++
T Consensus 5 ~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~--p~s~r~~~~~kl~~yr~~l~~lk~~l~~ 79 (79)
T PF05008_consen 5 TAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSL--PPSERNQYKSKLRSYRSELKKLKKELKK 79 (79)
T ss_dssp HHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 412
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=77.51 E-value=72 Score=30.95 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH-HHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT-IEN 461 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~-~~~ 461 (499)
.+....+.+..+..-...+.+++.+..++--.+..+++..+++...+..+++.+++++.+.++.---+-+++...+ +.+
T Consensus 87 ~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e 166 (377)
T KOG2896|consen 87 AQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIE 166 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccccCCCceeeeecCCC
Q 010847 462 EVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIAGGQ 499 (499)
Q Consensus 462 e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~~~~~~ 499 (499)
..-++.+..+.-..+..+.+..-+|.++-. -+|.+.+
T Consensus 167 ~~~~l~a~re~fL~~~~~~~~~irq~~~~~-s~i~~l~ 203 (377)
T KOG2896|consen 167 LRNELVAKRELFLEQRIQDTFKIRQDGSPL-SKILPLQ 203 (377)
T ss_pred HHHHHHHHHHhhHhHHHhhhhhhhccCcch-heeecCC
No 413
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=77.51 E-value=22 Score=29.21 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH--HHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010847 412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL--QKMLESSQTIENEVQILRQQKSAFEQEMERATSVQ 484 (499)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q 484 (499)
...+.-..++.+.+.++..++++++....++..+.+.. ++.-.-.++++++..+..+++..+..+++++....
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L~ 90 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKLE 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
No 414
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=77.50 E-value=21 Score=37.32 Aligned_cols=86 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhh------------------hHHHHHHHHHHHHHHhHH----HHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC------------------FKLEAQIAELQKMLESSQ----TIE 460 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~e~~~~l~~~~----~~~ 460 (499)
+...|+.++++++.++.+.+.++..++.++.-+.... .++.+.+.-..+++.++. +++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccCC
Q 010847 461 NEVQILRQQKSAFEQEMERATSVQTQGS 488 (499)
Q Consensus 461 ~e~~~~~~~~~~~~~~~~~~~~~q~q~~ 488 (499)
+++++++++++.+++++.++.....+..
T Consensus 152 ~~~~~~~~~l~~l~~~l~~l~~~~~~~~ 179 (525)
T TIGR02231 152 RRIRELEKQLSELQNELNALLTGKSQRS 179 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCccce
No 415
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.40 E-value=55 Score=32.32 Aligned_cols=97 Identities=8% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEV 463 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~ 463 (499)
+.-...+..+-..-.+...+++.++..++.++.++.+....+..++..-+++.+..+++..++..+..++...|++.+++
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHHHh
Q 010847 464 QILRQQKSAFEQEMERA 480 (499)
Q Consensus 464 ~~~~~~~~~~~~~~~~~ 480 (499)
-....+-++..++-+++
T Consensus 359 ~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 359 NDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHhhHHHHHH
No 416
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=77.40 E-value=14 Score=37.77 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred HhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHH
Q 010847 394 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAF 473 (499)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~ 473 (499)
+..-++.....+..+++.++.+..+.+.+++.+..++++++.+.+.++-+++.+.+++..+..+.-+++..+-.++++..
T Consensus 205 Ereaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~~~edek~aE~~kkE~E 284 (489)
T PF05262_consen 205 EREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQKKEDEKLAEEEKKEAE 284 (489)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhcccc
Q 010847 474 EQEMERATSVQT 485 (499)
Q Consensus 474 ~~~~~~~~~~q~ 485 (499)
..+.+-.+..++
T Consensus 285 Kaq~E~~k~~Ee 296 (489)
T PF05262_consen 285 KAQEEAKKKQEE 296 (489)
T ss_pred HHHHHHHHHHHH
No 417
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.28 E-value=83 Score=31.53 Aligned_cols=211 Identities=8% Similarity=-0.029 Sum_probs=0.0
Q ss_pred CCeEEcccCCCCCCcccc-------eEEEEcCCCCCcccCcEEEEEcCCCceEEe--eeCcccccCccccCCCCCCCCCc
Q 010847 13 DLWVTLPVSGARPSPRYK-------KLYIVGGSRNGRFLSDVQVFDLRSLAWSNL--RLETELDADKTEDSGLLEVLPPM 83 (499)
Q Consensus 13 ~~W~~~~~~~~~p~~r~~-------~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~--~~~~~~~~~~~~~~~~~~~p~~r 83 (499)
..|.+++.+...|..... .++++| ....++.-+-.-.+|... ++.....+-.......+..+..-
T Consensus 166 ~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg------~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~G 239 (398)
T PLN00033 166 ETWERIPLSPKLPGEPVLIKATGPKSAEMVT------DEGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTG 239 (398)
T ss_pred CCceECccccCCCCCceEEEEECCCceEEEe------ccceEEEECCCCCCceEcccccccccccccccccccccceecc
Q ss_pred cceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCc-EEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcE
Q 010847 84 SDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNL-CGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDV 162 (499)
Q Consensus 84 ~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~-W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v 162 (499)
..+.+....+--++.-|..+. +++-+-.-.+ |..+. ..+..+........++.+++.|. ...+
T Consensus 240 sf~~v~~~~dG~~~~vg~~G~------~~~s~d~G~~~W~~~~---~~~~~~l~~v~~~~dg~l~l~g~-------~G~l 303 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSSRGN------FYLTWEPGQPYWQPHN---RASARRIQNMGWRADGGLWLLTR-------GGGL 303 (398)
T ss_pred ceeeEEEcCCCCEEEEECCcc------EEEecCCCCcceEEec---CCCccceeeeeEcCCCCEEEEeC-------CceE
Q ss_pred EEEECCCCeeE--EeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccE
Q 010847 163 HFLDLETMTWD--AVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHA 240 (499)
Q Consensus 163 ~~yd~~t~~W~--~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~ 240 (499)
+.-+.....|+ .+........+..-..+...+++.+++.|..+ -+++-...-.+|+........+.+.+ -.
T Consensus 304 ~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~~~~~~~~ly-~v 376 (398)
T PLN00033 304 YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDKGADNIAANLY-SV 376 (398)
T ss_pred EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEccccCCCCccee-EE
Q ss_pred EEEECCEEEEEe
Q 010847 241 GITIDENWYIVG 252 (499)
Q Consensus 241 ~~~~~~~l~v~G 252 (499)
...-+++.|++|
T Consensus 377 ~f~~~~~g~~~G 388 (398)
T PLN00033 377 KFFDDKKGFVLG 388 (398)
T ss_pred EEcCCCceEEEe
No 418
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=77.26 E-value=34 Score=35.48 Aligned_cols=128 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred ccccccccccCCCCcccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH----HHHHHHHHh
Q 010847 360 PKTLSSKFAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS----SVQGQLVAE 435 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 435 (499)
|++..+-..........+....+.+.++++.++....+...+.+...++...+...+........++ ..+..+++.
T Consensus 100 PDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~ 179 (629)
T KOG0963|consen 100 PDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQE 179 (629)
T ss_pred CCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --------hhhhhHHHHHHHHHHHHHHhHH------------------------------------HHHHHHHHHHHhHH
Q 010847 436 --------RSRCFKLEAQIAELQKMLESSQ------------------------------------TIENEVQILRQQKS 471 (499)
Q Consensus 436 --------~~~~~~~~~~~~e~~~~l~~~~------------------------------------~~~~e~~~~~~~~~ 471 (499)
+.....+..++.+++.....++ .-+..+..++++.+
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e 259 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVE 259 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcccccC
Q 010847 472 AFEQEMERATSVQTQG 487 (499)
Q Consensus 472 ~~~~~~~~~~~~q~q~ 487 (499)
.+.+++..++..+++.
T Consensus 260 ~L~~ql~~~N~~~~~~ 275 (629)
T KOG0963|consen 260 QLREQLAKANSSKKLA 275 (629)
T ss_pred HHHHHHHhhhhhhhhc
No 419
>PRK11281 hypothetical protein; Provisional
Probab=77.19 E-value=28 Score=39.66 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHH-------------HHHhhhhhhHHHHHH
Q 010847 380 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQ-------------LVAERSRCFKLEAQI 446 (499)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 446 (499)
++...+.-+..-.+-....+.+.+.+.+++.++....++.+..++++..+++ +.+++.+..+++.++
T Consensus 58 ~k~~~~~l~~tL~~L~qi~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~L 137 (1113)
T PRK11281 58 DKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQL 137 (1113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010847 447 AELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 490 (499)
Q Consensus 447 ~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~ 490 (499)
++.+++|...+ .++..-++.+.++.+-.+.+++.++++....-+
T Consensus 138 q~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~ 185 (1113)
T PRK11281 138 QNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVG 185 (1113)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCC
No 420
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.11 E-value=29 Score=34.28 Aligned_cols=106 Identities=10% Similarity=0.138 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhh-hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSR-FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
+.+..+.+-++.+....+..++...++... -...+....+++.+.++++.+..+++++++..+.....+++....++.+
T Consensus 146 ~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 146 NKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---------------HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010847 456 SQ---------------TIENEVQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 456 ~~---------------~~~~e~~~~~~~~~~~~~~~~~~~~ 482 (499)
.. ..+.++.-+..|.+-.+.+++.+++
T Consensus 226 ~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 226 EEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHh
No 421
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.10 E-value=32 Score=29.31 Aligned_cols=104 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-hHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE-SSQTIEN 461 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~-~~~~~~~ 461 (499)
++.+-.+...-+..+...+.+..+|..+...........++++.++......+.+.....-.++++..++|+ ....+..
T Consensus 38 Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 38 LESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q ss_pred HHHHHHHhHHHHHHHHHHhhccccc
Q 010847 462 EVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 462 e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
....+..+..++..+...+..++++
T Consensus 118 q~~rlee~e~~l~~e~~~l~er~~e 142 (158)
T PF09744_consen 118 QSSRLEEREAELKKEYNRLHERERE 142 (158)
T ss_pred hccccchhHHHHHHHHHHHHHHHHH
No 422
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.06 E-value=27 Score=36.86 Aligned_cols=103 Identities=13% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
..+...+..+......+...+......-..+...+++....+.+.+++..++...++.++..+.+.+.++..++.++..+
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-------------HHHHHHHHHHHhHHHHHHHHHH
Q 010847 457 Q-------------TIENEVQILRQQKSAFEQEMER 479 (499)
Q Consensus 457 ~-------------~~~~e~~~~~~~~~~~~~~~~~ 479 (499)
. +..........+.+.+..++++
T Consensus 427 kR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~ 462 (560)
T PF06160_consen 427 KRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQ 462 (560)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhc
No 423
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=76.96 E-value=35 Score=27.06 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH---------------HHHHHHHHHHhhhhhhHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE---------------LSSVQGQLVAERSRCFKLE 443 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 443 (499)
++..++.+...-..+...+.....+...++..+.+.+..+.+++.- .+....-...++.+.+.++
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie 80 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLE 80 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010847 444 AQIAELQKMLESSQTIENEVQILRQQK 470 (499)
Q Consensus 444 ~~~~e~~~~l~~~~~~~~e~~~~~~~~ 470 (499)
..+..+++++..+++..++++.-.+++
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=76.75 E-value=44 Score=28.12 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=0.0
Q ss_pred hHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH------HHHHHHHHHHHhH
Q 010847 397 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ------TIENEVQILRQQK 470 (499)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~------~~~~e~~~~~~~~ 470 (499)
+.........+......+-+.+-+.+.+++..+.++.........++.+..++.++++.+. .+...++..-.+.
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e~ 108 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASEA 108 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 010847 471 SAFEQEM 477 (499)
Q Consensus 471 ~~~~~~~ 477 (499)
+...+++
T Consensus 109 eeeSe~l 115 (150)
T PF07200_consen 109 EEESEEL 115 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 425
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=76.72 E-value=18 Score=32.06 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=0.0
Q ss_pred HhhhhhHHHHHHhhccchHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010847 402 TENSRFREKIDEVNSTHSELSKELSSVQGQLVA-ERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 476 (499)
Q Consensus 402 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~ 476 (499)
...-.+-.++...+...++..++.+...+..++ .+++..+.+.+++++++++.. .+++.+.+..|.+.+++|
T Consensus 118 ~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~---~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 118 RRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK---KEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
No 426
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.68 E-value=61 Score=33.14 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHH------------------HHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKL------------------EAQ 445 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 445 (499)
..++.....+..+..++-++.+.++++.+.+++....+++.+++.....+.+..++++| +++
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~E 663 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKE 663 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHH
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010847 446 IAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQ 484 (499)
Q Consensus 446 ~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~q 484 (499)
++-+-.+++.++ .+|.-.....+|+.-..+-++.+.+.+
T Consensus 664 lq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~ 703 (741)
T KOG4460|consen 664 LQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPT 703 (741)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
No 427
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=76.65 E-value=12 Score=35.18 Aligned_cols=60 Identities=17% Similarity=0.292 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
++.-|+..|++.+.++.+-.++-++...+++.++.-+.-|+-+.+|+++.|.+-.+|-++
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEE 207 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 428
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=76.56 E-value=18 Score=31.11 Aligned_cols=64 Identities=27% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 420 ELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
...+||......+... .+-..+++.++.+++++++.+++.+.+...++.....++.+|+.....
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=76.54 E-value=28 Score=25.74 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010847 406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSVQ 484 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~q 484 (499)
+|.+.++.++.+.....+++...+.+....+.++...-++++.+++.+-+++ .-.+-.+++..++..+..+++ .+..|
T Consensus 1 Rl~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe-~r~~~ 79 (79)
T PF08581_consen 1 RLNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE-QRGRQ 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCC
No 430
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=76.53 E-value=55 Score=29.46 Aligned_cols=91 Identities=14% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----HHHHH
Q 010847 387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----TIENE 462 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e 462 (499)
+..++.+...-.+.+-+-.+|+..+......-.++.+ +++...+...+.++-+.|+.+-+-++++-..+- ++..+
T Consensus 55 ~rKr~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaR-m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKAR-MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHhHHHHHHHHH
Q 010847 463 VQILRQQKSAFEQEME 478 (499)
Q Consensus 463 ~~~~~~~~~~~~~~~~ 478 (499)
++.+.+++..+.++.+
T Consensus 134 le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 134 LELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHhhHHHHH
No 431
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.52 E-value=52 Score=30.49 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH-----------HHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI-----------AELQK 451 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~e~~~ 451 (499)
++.|+.+.++.+..+.+-..++.+|+.+|-..++.=-|.+=---+.|-.|.+.++.+.+|++-+ +-+|+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQK 149 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQK 149 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHH
Q ss_pred HHHhHHHHHHHHHHHHHhHH
Q 010847 452 MLESSQTIENEVQILRQQKS 471 (499)
Q Consensus 452 ~l~~~~~~~~e~~~~~~~~~ 471 (499)
--..+....++++-|.+-.+
T Consensus 150 YFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 150 YFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHhhhhhhHhHHHHHHHHHH
No 432
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=76.47 E-value=40 Score=37.97 Aligned_cols=110 Identities=23% Similarity=0.347 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 376 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
.+.+...+..+++.+..+.....+.+......++.-....+...+.+.++..++..+......+++++..-.+.++....
T Consensus 583 ~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~ 662 (1317)
T KOG0612|consen 583 NRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISD 662 (1317)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q ss_pred HH------HHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 456 SQ------TIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 456 ~~------~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
.. +++.+++-++++++++..|.... ..+.+
T Consensus 663 ~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~-~L~~~ 698 (1317)
T KOG0612|consen 663 SEKEALEIKLERKLKMLQNELEQENAEHHRL-RLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH
No 433
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=76.47 E-value=16 Score=30.07 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccccCCCceeeeec
Q 010847 417 THSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQGSGGVWRWIA 496 (499)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~~~ 496 (499)
++.....+++.....+...+..+..+..++.-+....++.++.+.++.+.+.+..++....++.-++..-+-+-..+| |
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~W-a 98 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRW-A 98 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-h
Q ss_pred CCC
Q 010847 497 GGQ 499 (499)
Q Consensus 497 ~~~ 499 (499)
++.
T Consensus 99 ~t~ 101 (135)
T TIGR03495 99 DTP 101 (135)
T ss_pred cCC
No 434
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=76.44 E-value=83 Score=31.12 Aligned_cols=251 Identities=13% Similarity=0.041 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
+|++.|-+.+.. .++.+|+.++.=.++..-... ...+..++.-++.||++-. ...
T Consensus 49 kllF~s~~dg~~---nly~lDL~t~~i~QLTdg~g~---------------~~~g~~~s~~~~~~~Yv~~-------~~~ 103 (386)
T PF14583_consen 49 KLLFASDFDGNR---NLYLLDLATGEITQLTDGPGD---------------NTFGGFLSPDDRALYYVKN-------GRS 103 (386)
T ss_dssp EEEEEE-TTSS----EEEEEETTT-EEEE---SS-B----------------TTT-EE-TTSSEEEEEET-------TTE
T ss_pred EEEEEeccCCCc---ceEEEEcccCEEEECccCCCC---------------CccceEEecCCCeEEEEEC-------CCe
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCC------------------CCccCcEEEEECCCCee
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRS------------------RKLLNDVHFLDLETMTW 172 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~------------------~~~~~~v~~yd~~t~~W 172 (499)
+...|+.|.+=+.+- ..|..-.++...+++..--.+.|.... ......+...|+.+++.
T Consensus 104 l~~vdL~T~e~~~vy---~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~ 180 (386)
T PF14583_consen 104 LRRVDLDTLEERVVY---EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER 180 (386)
T ss_dssp EEEEETTT--EEEEE---E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E
T ss_pred EEEEECCcCcEEEEE---ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce
Q ss_pred EEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCC-cEEEEECCCCceEecccCCCCCCcCcccEEEEECCEEEEE
Q 010847 173 DAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFN-DLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITIDENWYIV 251 (499)
Q Consensus 173 ~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~-~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 251 (499)
+.+-... .--+|....=.+..+++|.--+.-.... .||..|........+ ....+...++|---.-++..+.+
T Consensus 181 ~~v~~~~----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v--~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 181 KVVFEDT----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV--HRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EEEEEES----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES--S---TTEEEEEEEE-TTSS-EEE
T ss_pred eEEEecC----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee--ecCCCCcccccccccCCCCEEEE
Q ss_pred eCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCc------------eEEE
Q 010847 252 GGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNN------------EVFV 319 (499)
Q Consensus 252 GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~------------~~~~ 319 (499)
-+......-.-+..||+.+..=+.+..+| ...-...+.+..|++.-|.+..... .+|+
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~ 324 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP----------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYL 324 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE-----------SEEEEEE-TTSSEEEEEE-------------------EEEE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC----------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEE
Q ss_pred EECCCC
Q 010847 320 MRLKPR 325 (499)
Q Consensus 320 ~~~~~~ 325 (499)
+++...
T Consensus 325 ~~~~~~ 330 (386)
T PF14583_consen 325 FDVEAG 330 (386)
T ss_dssp EETTTT
T ss_pred eccccC
No 435
>PRK00846 hypothetical protein; Provisional
Probab=76.37 E-value=19 Score=26.45 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 398 TEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
.+....-..+...+.+++..+.=.+.-++++-+.+-..+..+.+++++++-+..+|+.++
T Consensus 2 ~~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 2 EQLSLRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 436
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=76.35 E-value=1.1e+02 Score=32.28 Aligned_cols=234 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred EEEcCCCCCcccCcEEEEEcCCC--ceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 33 YIVGGSRNGRFLSDVQVFDLRSL--AWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 33 ~~~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
++.+|.++. ++.|-..++ .|......... ++.--+++++++ +.+-||.+
T Consensus 260 vfsaGvd~~-----ii~~~~~~~~~~wv~~~~r~~h---------------~hdvrs~av~~~-~l~sgG~d-------- 310 (691)
T KOG2048|consen 260 VFSAGVDPK-----IIQYSLTTNKSEWVINSRRDLH---------------AHDVRSMAVIEN-ALISGGRD-------- 310 (691)
T ss_pred EEEccCCCc-----eEEEEecCCccceeeeccccCC---------------cccceeeeeecc-eEEeccee--------
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEc----------CcCCCCCccCcEEEEECCCCeeEEeeecCC
Q 010847 111 VRFIDLETNLCGVMETSGKVPVARGGHSVTLVGSRLIIFG----------GEDRSRKLLNDVHFLDLETMTWDAVEVTQT 180 (499)
Q Consensus 111 ~~~yd~~t~~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~G----------G~~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 180 (499)
..++-............-.-+.++..-..++..++|+++= |........+..+.+.+.+..-+.+.
T Consensus 311 ~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs---- 386 (691)
T KOG2048|consen 311 FTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENIS---- 386 (691)
T ss_pred eEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCcccee----
Q ss_pred CCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEEEEECCCCceEecccCCCCCCcCcccEEEEE---CCEEEEEeCCCCC
Q 010847 181 PPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQTNEWSQPEIKGDLVTGRAGHAGITI---DENWYIVGGGDNN 257 (499)
Q Consensus 181 ~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~~~~W~~~~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~ 257 (499)
+++...++.++.+|-.. ++-+|.+.-.-=.++..-..+|..+-..+.... ++.++++.
T Consensus 387 --------~~aiSPdg~~Ia~st~~------~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s----- 447 (691)
T KOG2048|consen 387 --------CAAISPDGNLIAISTVS------RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVS----- 447 (691)
T ss_pred --------eeccCCCCCEEEEeecc------ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEe-----
Q ss_pred CCcceEEEEECCCCceEEeccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCC
Q 010847 258 NGCQETIVLNMTKLAWSILTSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRD 326 (499)
Q Consensus 258 ~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 326 (499)
....++..++..+.+.+.+...... +....-...++..+++||.+.++.. .+++|++++..
T Consensus 448 ~~~~~le~~el~~ps~kel~~~~~~---~~~~~I~~l~~SsdG~yiaa~~t~g-----~I~v~nl~~~~ 508 (691)
T KOG2048|consen 448 KNIFSLEEFELETPSFKELKSIQSQ---AKCPSISRLVVSSDGNYIAAISTRG-----QIFVYNLETLE 508 (691)
T ss_pred cccceeEEEEecCcchhhhhccccc---cCCCcceeEEEcCCCCEEEEEeccc-----eEEEEEcccce
No 437
>PRK04406 hypothetical protein; Provisional
Probab=76.27 E-value=15 Score=26.85 Aligned_cols=57 Identities=9% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 401 RTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
......+...+..++..+.=.+.-++++-+.+-.++..+..|+++++.+.++++..+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 438
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=76.18 E-value=26 Score=35.89 Aligned_cols=100 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHhHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRC-FKLEAQIAELQKMLESSQTIEN 461 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~l~~~~~~~~ 461 (499)
+..|.++.......+.+...+.......+...+.++.+.++.+++.-.+........ .-++++.+.+.+++..++..-.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHhHHHHHHHHHHhhc
Q 010847 462 EVQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 462 e~~~~~~~~~~~~~~~~~~~~ 482 (499)
..-+.+++...++++++-.++
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~ 387 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARS 387 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHH
No 439
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.17 E-value=12 Score=38.34 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 420 ELSKELSSVQGQLVAERSRCFKLEAQIAELQK----------MLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----------~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
++.++++.+++++++.+++..+++..+..+++ +.+..+++.+...++.++++++..++.++++..+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 440
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=76.16 E-value=51 Score=28.54 Aligned_cols=108 Identities=26% Similarity=0.411 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELS----SVQGQLVAERSRCFKLEAQIAELQKM 452 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~e~~~~ 452 (499)
+.++..|..|+-++...+..+.....+....+.-++...........+.. .+..++...+.||.-||.++.-+.+-
T Consensus 7 K~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRkm 86 (178)
T PF14073_consen 7 KNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRKM 86 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHH-----------HHHHHH-------HHHHHhHHHHHHHHHHhhccc
Q 010847 453 LESSQ-----------TIENEV-------QILRQQKSAFEQEMERATSVQ 484 (499)
Q Consensus 453 l~~~~-----------~~~~e~-------~~~~~~~~~~~~~~~~~~~~q 484 (499)
....+ .++++. +.....++.++++--++.+.|
T Consensus 87 v~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 87 VESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
No 441
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=76.06 E-value=15 Score=34.29 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HhhhHHHHHhhhh-hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847 394 ELSLTEVRTENSR-FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 458 (499)
Q Consensus 394 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 458 (499)
+..+.+.+++.+- -.+.-+..+.+.+++.-|++.+...+++++++...++++++.+++-+.+..+
T Consensus 225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=76.06 E-value=67 Score=29.81 Aligned_cols=94 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHhHH--
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----RSRCFKLEAQIAELQKMLESSQ-- 457 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~e~~~~l~~~~-- 457 (499)
..++.-+.++++.-.+.......|+++++.++..+....+++.-+..=.+++ .-++..|.++++.+....+...
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdElde 142 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDE 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHhHHHHHHHH
Q 010847 458 ---TIENEVQILRQQKSAFEQEM 477 (499)
Q Consensus 458 ---~~~~e~~~~~~~~~~~~~~~ 477 (499)
-++.++..+..+.+...+++
T Consensus 143 l~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 143 LNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=76.02 E-value=63 Score=29.52 Aligned_cols=102 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHh
Q 010847 376 EKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLES 455 (499)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 455 (499)
...++.....+..-+..+.......+.+..-|++...+.+.-++|...-++++++=.+....-+....+...|..+....
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHH-H
Q 010847 456 SQTIENEVQILRQQKSAFEQE-M 477 (499)
Q Consensus 456 ~~~~~~e~~~~~~~~~~~~~~-~ 477 (499)
++.+.++...+..+...+..+ +
T Consensus 83 i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
No 444
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.96 E-value=26 Score=25.12 Aligned_cols=65 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 419 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKM----LESSQTIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
..++.++..++..+..+.++....+.....+.++ +.++...-.+..++..+.+.+.++++..+.+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 445
>PRK00295 hypothetical protein; Provisional
Probab=75.94 E-value=16 Score=26.19 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+...+.+++..+.=.+.-++++-+.+-+++..+..++++++.+.++++..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 446
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=75.86 E-value=29 Score=35.66 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 010847 386 IKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQI 465 (499)
Q Consensus 386 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~ 465 (499)
++..+...++.......+...|.+++++...++-...+.+++++.++.++.+......+....++.++..+|++.+...+
T Consensus 405 i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~ 484 (607)
T KOG0240|consen 405 ITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKD 484 (607)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhcccccCCCc
Q 010847 466 LRQQKSAFEQEMERATSVQTQGSGG 490 (499)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~q~q~~~~ 490 (499)
-..+.-+..+++.....+-.+....
T Consensus 485 e~~e~~~al~el~~~~~~~~~~~~~ 509 (607)
T KOG0240|consen 485 EVKEVLTALEELAVNYDQKSEEKES 509 (607)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhh
No 447
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=75.84 E-value=27 Score=25.11 Aligned_cols=65 Identities=23% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 393 LELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
++......+.+...+..+++..+..+..+.++-...-.++...-+.+.+|..++..++++|+...
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 448
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=75.68 E-value=44 Score=27.52 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhcc---------------chHHHHHHHHHHHHHHHhhhhhhHHHH
Q 010847 380 RTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNST---------------HSELSKELSSVQGQLVAERSRCFKLEA 444 (499)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (499)
...+.+++.+...+.........+.+-|+..++..+.. ..-..++++++.-+....+++-..++.
T Consensus 22 e~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~k 101 (147)
T PF02090_consen 22 EQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEK 101 (147)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHH---------HHHHHHHHHHHhHHHHHHHHHHh
Q 010847 445 QIAELQKMLESSQ---------TIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 445 ~~~e~~~~l~~~~---------~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
+..+.+++.+.-. +...+......++.+.|.|.|+.
T Consensus 102 e~~~~~~~r~~wlrK~dkY~rw~~~~kr~~r~~~l~qeE~E~EEi 146 (147)
T PF02090_consen 102 EKQEQQEQRKHWLRKEDKYDRWQQRQKRLRRLQQLRQEETEQEEI 146 (147)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 449
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.59 E-value=42 Score=34.17 Aligned_cols=110 Identities=20% Similarity=0.330 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
+.++.+.+.|++....++..+.+.......+++....+........+++..+.=.+++.+|+|-++++++......+...
T Consensus 334 e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda 413 (654)
T KOG4809|consen 334 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA 413 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q ss_pred H----------HHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 457 Q----------TIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 457 ~----------~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
. .++++...+........-+.+++.+-..|
T Consensus 414 r~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 414 RMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=75.51 E-value=45 Score=34.82 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH----H
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ----T 458 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~----~ 458 (499)
+..+..+.......+.....+...|+..++.++.+++....++...++........+..|+.++...+.+|.... +
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Q 010847 459 IENEVQILRQQKSAFEQEMERAT 481 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~~~~ 481 (499)
.......+...++++..+.++++
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
No 451
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=75.36 E-value=8.2 Score=26.12 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 010847 410 KIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAEL 449 (499)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 449 (499)
++.+++..+...+..+..++.++++.++.++++++.++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=75.25 E-value=52 Score=32.23 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHH----------HHHHHhhhhhhHHHHHH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQ----------GQLVAERSRCFKLEAQI 446 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 446 (499)
.....++...+......+..+...+.+....+.+++..+.+++..+++++..+ .+++..+......+..+
T Consensus 89 ~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l 168 (346)
T PRK10476 89 AQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSL 168 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 447 AELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 447 ~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
+..+.++........++...+.++++.+.++++++.....
T Consensus 169 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~~ 208 (346)
T PRK10476 169 NQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLED 208 (346)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhc
No 453
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=75.24 E-value=43 Score=33.87 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
+.....+..++++.......+.....++.+|..+|-.+++.+.....+.++....++.-+..-++++.++.|++.+..+.
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhH
Q 010847 457 QTIENEVQILRQQK 470 (499)
Q Consensus 457 ~~~~~e~~~~~~~~ 470 (499)
-....|-++=.+.+
T Consensus 288 m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 288 MQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHhh
No 454
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=75.10 E-value=24 Score=27.83 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHhhccchHHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 010847 401 RTENSRFREKIDEVNSTHSELSKELSSV--QGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILR 467 (499)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~ 467 (499)
+.+...+.+.+.....++...+.+++.+ ++++..++-.+.+++-++.++..+++.+..+.+-+-+..
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~ 102 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 455
>PRK00736 hypothetical protein; Provisional
Probab=75.03 E-value=15 Score=26.28 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
+...+..++..+.-.+.-++++-+.+-.++..+..|+++++.+.++++..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 456
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=75.01 E-value=54 Score=28.27 Aligned_cols=97 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHhHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----RSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
...+.+++..+...+........+......+.+..+.+.+++.+++..+-..+ .+.+.+.+.+...+.++-+..-
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~i 127 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELM 127 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 010847 458 TIENEVQILRQQKSAFEQEMER 479 (499)
Q Consensus 458 ~~~~e~~~~~~~~~~~~~~~~~ 479 (499)
..+++.....-+.+...+-.++
T Consensus 128 e~Ek~~a~~elk~eii~~~~~~ 149 (167)
T PRK08475 128 EFEVRKMEREVVEEVLNELFES 149 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 457
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=74.92 E-value=37 Score=26.35 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhc
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 482 (499)
+..-..-++.+++.-..++.-+++-+.....+..++......+...+..+..+.++++.+.+++.+++.++.++++
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=74.84 E-value=97 Score=31.07 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=0.0
Q ss_pred CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCC
Q 010847 55 LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR 134 (499)
Q Consensus 55 ~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 134 (499)
.+|........ ..........++...++..|+.|- ...++.=+-.-.+|+.+.....+|..
T Consensus 120 ~tW~~~~~~~~-----------~~~~~~~~l~~v~f~~~~g~~vG~-------~G~il~T~DgG~tW~~~~~~~~~p~~- 180 (398)
T PLN00033 120 KTWVPRSIPSA-----------EDEDFNYRFNSISFKGKEGWIIGK-------PAILLHTSDGGETWERIPLSPKLPGE- 180 (398)
T ss_pred CCceECccCcc-----------cccccccceeeeEEECCEEEEEcC-------ceEEEEEcCCCCCceECccccCCCCC-
Q ss_pred cceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEe---------------eecCCCCCCCccceEEEEcCcEEE
Q 010847 135 GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAV---------------EVTQTPPAPRYDHSAALHANRYLI 199 (499)
Q Consensus 135 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---------------~~~~~~p~~r~~~~~~~~~~~~l~ 199 (499)
.....+.-++.++++|. ...++.-+-...+|+.+ .+.+..+..-..+++....++.++
T Consensus 181 ~~~i~~~~~~~~~ivg~-------~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~ 253 (398)
T PLN00033 181 PVLIKATGPKSAEMVTD-------EGAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYV 253 (398)
T ss_pred ceEEEEECCCceEEEec-------cceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEE
Q ss_pred EEcCCCCCCCCCcEEEEECCCCc-eEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEEEECCCCceE--Ee
Q 010847 200 VFGGCSHSIFFNDLHVLDLQTNE-WSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIVLNMTKLAWS--IL 276 (499)
Q Consensus 200 v~GG~~~~~~~~~i~~~d~~~~~-W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~--~l 276 (499)
++|-.+ .+++-+-...+ |+.+ ......+........++.++++|... .++.-+.....|. .+
T Consensus 254 ~vg~~G------~~~~s~d~G~~~W~~~---~~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f 318 (398)
T PLN00033 254 AVSSRG------NFYLTWEPGQPYWQPH---NRASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDF 318 (398)
T ss_pred EEECCc------cEEEecCCCCcceEEe---cCCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccce
Q ss_pred ccCCCCCCCCCCCCceEEEEEcCceEEEEEcCCCCCCCceEEEEECCCCCCCCCc
Q 010847 277 TSVKGRNPLASEGLSVCSAIIEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPK 331 (499)
Q Consensus 277 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~~~~ 331 (499)
... +....+.....+...++..++++|... -+++-....++|....
T Consensus 319 ~~~----~~~~~~~~l~~v~~~~d~~~~a~G~~G-----~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 319 EEA----DIKSRGFGILDVGYRSKKEAWAAGGSG-----ILLRSTDGGKSWKRDK 364 (398)
T ss_pred eec----ccCCCCcceEEEEEcCCCcEEEEECCC-----cEEEeCCCCcceeEcc
No 459
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=74.78 E-value=29 Score=27.55 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 391 RVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 391 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
+.....+...+.+.+...+.+.+.+..+++....+++.++.+++.+++.++++.+..+.+++++.+
T Consensus 21 ~~qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ik~~ 86 (110)
T PF10828_consen 21 WYQSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESIKTA 86 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 460
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=74.77 E-value=46 Score=27.38 Aligned_cols=85 Identities=13% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHH
Q 010847 394 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-RSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQ 468 (499)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~ 468 (499)
+..+.+...+.+.|..+....+.+..-+..=+...+-+.... ++.+..+.+.+.-++++++++. .++++..++++
T Consensus 22 e~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~r~~~~vl~r~~L~allRkqAVvRrqi~eL~lq~~~i~ekR~~l~k 101 (147)
T PF02090_consen 22 EQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQRAEGCVLSREELYALLRKQAVVRRQIQELNLQEQQIQEKRRQLEK 101 (147)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHH
Q 010847 469 QKSAFEQEME 478 (499)
Q Consensus 469 ~~~~~~~~~~ 478 (499)
++....+++.
T Consensus 102 e~~~~~~~r~ 111 (147)
T PF02090_consen 102 EKQEQQEQRK 111 (147)
T ss_pred HHHHHHHHHH
No 461
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=74.76 E-value=64 Score=29.45 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred cccCCCCcccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh-----------
Q 010847 367 FAGIGNDLSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------- 435 (499)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 435 (499)
+......-..+.+...++-|++....+.+..+.......-+-..+...+.+.++....++.++.+++=.
T Consensus 94 ~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDP 173 (330)
T KOG2991|consen 94 YVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDP 173 (330)
T ss_pred HHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhCh
Q ss_pred --hhhhhHHHHHHHHHHHHHHhHH-----------------------HHHHHHHHHHHhHH-----HHHHHH
Q 010847 436 --RSRCFKLEAQIAELQKMLESSQ-----------------------TIENEVQILRQQKS-----AFEQEM 477 (499)
Q Consensus 436 --~~~~~~~~~~~~e~~~~l~~~~-----------------------~~~~e~~~~~~~~~-----~~~~~~ 477 (499)
..--.+|+..+.+...+|++.| .|++|.+++-.+.. +++-+|
T Consensus 174 Ainl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eL 245 (330)
T KOG2991|consen 174 AINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIEL 245 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHH
No 462
>PTZ00121 MAEBL; Provisional
Probab=74.63 E-value=33 Score=39.35 Aligned_cols=112 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHH
Q 010847 382 DIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIEN 461 (499)
Q Consensus 382 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~ 461 (499)
+..+.++.++.-+....+.......++...+....+-....++..........+.++..+..+..+|.+++..+....++
T Consensus 1168 EaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEARraEEErR~EE~RraEEaRK~aEEAkraEE 1247 (2084)
T PTZ00121 1168 EARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccccCCCceee
Q 010847 462 EVQILRQQKSAFEQEMERATSVQTQGSGGVWR 493 (499)
Q Consensus 462 e~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~ 493 (499)
+...-..++....+-.+.++.+..+..+-..+
T Consensus 1248 eR~~EE~Rk~Eear~a~~A~r~aa~k~Ee~Rr 1279 (2084)
T PTZ00121 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHH
No 463
>PRK02793 phi X174 lysis protein; Provisional
Probab=74.62 E-value=15 Score=26.57 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 403 ENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 403 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
....+...+.+++..+.=.+.-++++-+.+-+++..+..++++++.+.++++...
T Consensus 2 ~~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 2 QDSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 464
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=74.52 E-value=53 Score=35.08 Aligned_cols=114 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhH
Q 010847 377 KDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESS 456 (499)
Q Consensus 377 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~ 456 (499)
+.++.+...+.+....+..........+.+++.++...........+++....+.++..+....++.+.+..++.++...
T Consensus 499 k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~ 578 (698)
T KOG0978|consen 499 KLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS 578 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-----------HHHHHHHHHHHhHHHHHHHHHHhhcccccCCCc
Q 010847 457 Q-----------TIENEVQILRQQKSAFEQEMERATSVQTQGSGG 490 (499)
Q Consensus 457 ~-----------~~~~e~~~~~~~~~~~~~~~~~~~~~q~q~~~~ 490 (499)
+ ....+++...+....+++++++++...+..+.+
T Consensus 579 ~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 579 EAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
No 465
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=74.45 E-value=60 Score=28.53 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010847 390 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 469 (499)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~ 469 (499)
+..+-+......--.++|-+.+-....+.--..-|.-.+-+-+....+..++|-....|.++..+.++.|+++.+.-...
T Consensus 10 rerLL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~ 89 (272)
T KOG4552|consen 10 RERLLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEV 89 (272)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHH
Q ss_pred HHHHHHHHHHhh
Q 010847 470 KSAFEQEMERAT 481 (499)
Q Consensus 470 ~~~~~~~~~~~~ 481 (499)
.++++..|..++
T Consensus 90 IQqLqk~LK~aE 101 (272)
T KOG4552|consen 90 IQQLQKNLKSAE 101 (272)
T ss_pred HHHHHHHHHHHH
No 466
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=74.40 E-value=71 Score=34.50 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH---
Q 010847 381 TDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--- 457 (499)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--- 457 (499)
.+..-++.++..++.. ....+.++.+++..+.+......++.+.+...+.+..+-..++.+.+..++++++.++.
T Consensus 568 aRk~liE~rKe~~E~~--~~~re~Eea~~q~~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te 645 (988)
T KOG2072|consen 568 ARKSLIEKRKEDLEKQ--NVEREAEEAQEQAKEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTE 645 (988)
T ss_pred HHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---------------------HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 458 ---------------------TIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 458 ---------------------~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
-+..+++++.++.+.++.-++.+...
T Consensus 646 ~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q~Kk 692 (988)
T KOG2072|consen 646 VGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQEKK 692 (988)
T ss_pred HHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 467
>PRK04325 hypothetical protein; Provisional
Probab=74.34 E-value=16 Score=26.62 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH
Q 010847 405 SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ 457 (499)
Q Consensus 405 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~ 457 (499)
..+...+.+++..+.=.+.-++++-+.+-+++..+.+|+++++.+.++++..+
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 468
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=74.33 E-value=37 Score=29.28 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 412 DEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
.+.+..++.-..++...++.+++....++.-++.++..+++|.... ++++-.++.-+++++..++.++..+.
T Consensus 30 ~e~e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq 102 (228)
T PRK06800 30 VEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQE 102 (228)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.30 E-value=31 Score=36.93 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH---------
Q 010847 387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--------- 457 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--------- 457 (499)
....+..++..++.......++..+.+...+++...+...+.+.+.++++++++....+..++++++..+.
T Consensus 642 e~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~ 721 (970)
T KOG0946|consen 642 EEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSK 721 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q ss_pred ------------HHHHHHHHHHHhHHHHHHHHHHhhcccccC
Q 010847 458 ------------TIENEVQILRQQKSAFEQEMERATSVQTQG 487 (499)
Q Consensus 458 ------------~~~~e~~~~~~~~~~~~~~~~~~~~~q~q~ 487 (499)
...+++..++-+-+.+..+++.+++...++
T Consensus 722 ~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~ 763 (970)
T KOG0946|consen 722 QRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKELNKK 763 (970)
T ss_pred hhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 470
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=74.26 E-value=17 Score=37.09 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 010847 411 IDEVNSTHSELSKELSSVQGQLVAERSRCFKLEA----------QIAELQKMLESSQTIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
...+..+++++++++++.+.++++++..+.+++. ....+++-.+...++.++++++.+++.++++++++.
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 471
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.97 E-value=17 Score=36.54 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 010847 375 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE 454 (499)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~ 454 (499)
.++..+.++..+.++..+++..-...--.+++++.++.++..++=.....++.+++.=-.+.-.+++|+.++.-+.+++.
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln 428 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLN 428 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhc
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHH
Q 010847 455 SSQTIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 455 ~~~~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.=.++..++..+..+.....-++.
T Consensus 429 ~Pnq~k~Rl~~L~e~~r~q~~~~~ 452 (508)
T KOG3091|consen 429 APNQLKARLDELYEILRMQNSQLK 452 (508)
T ss_pred ChHHHHHHHHHHHHHHHhhcchhc
No 472
>PRK10115 protease 2; Provisional
Probab=73.89 E-value=1.4e+02 Score=32.48 Aligned_cols=261 Identities=8% Similarity=-0.040 Sum_probs=0.0
Q ss_pred eEEEEcCCCCCcccCcEEEEEcCCCceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCce
Q 010847 31 KLYIVGGSRNGRFLSDVQVFDLRSLAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMI 110 (499)
Q Consensus 31 ~l~~~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~ 110 (499)
+.++++-..++.....+++.|+.++....-+.. ...+.....-++.-+++............
T Consensus 139 ~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~------------------~~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 139 TIMALAEDFLSRRQYGIRFRNLETGNWYPELLD------------------NVEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred CEEEEEecCCCcEEEEEEEEECCCCCCCCcccc------------------CcceEEEEeeCCCEEEEEEecCCCCCCCE
Q ss_pred EEEEECCCC--cEEEeecCCCCCCCCcceEEEEECCEEEEEcCcCCCCCccCcEEEEE--CCCCeeEEeeecCCCCCCCc
Q 010847 111 VRFIDLETN--LCGVMETSGKVPVARGGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLD--LETMTWDAVEVTQTPPAPRY 186 (499)
Q Consensus 111 ~~~yd~~t~--~W~~~~~~g~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd--~~t~~W~~~~~~~~~p~~r~ 186 (499)
++++++.|. .=..+- .-+............+.-|++ ........+.++.|+ ..+..|..+ .+.+..
T Consensus 201 v~~h~lgt~~~~d~lv~---~e~~~~~~~~~~~s~d~~~l~--i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~ 270 (686)
T PRK10115 201 VWRHTIGTPASQDELVY---EEKDDTFYVSLHKTTSKHYVV--IHLASATTSEVLLLDAELADAEPFVF-----LPRRKD 270 (686)
T ss_pred EEEEECCCChhHCeEEE---eeCCCCEEEEEEEcCCCCEEE--EEEECCccccEEEEECcCCCCCceEE-----EECCCC
Q ss_pred cceEEEEcCcEEEEEcCCCCCCCCCcEEEEECC-CCceEecccCCCCCCcCcccEEEEECCEEEEEeCCCCCCCcceEEE
Q 010847 187 DHSAALHANRYLIVFGGCSHSIFFNDLHVLDLQ-TNEWSQPEIKGDLVTGRAGHAGITIDENWYIVGGGDNNNGCQETIV 265 (499)
Q Consensus 187 ~~~~~~~~~~~l~v~GG~~~~~~~~~i~~~d~~-~~~W~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 265 (499)
........++.+|+.--.+ .....+...++. ...|+.+ -+......--.+...++.+++. ........+++
T Consensus 271 ~~~~~~~~~~~ly~~tn~~--~~~~~l~~~~~~~~~~~~~l---~~~~~~~~i~~~~~~~~~l~~~---~~~~g~~~l~~ 342 (686)
T PRK10115 271 HEYSLDHYQHRFYLRSNRH--GKNFGLYRTRVRDEQQWEEL---IPPRENIMLEGFTLFTDWLVVE---ERQRGLTSLRQ 342 (686)
T ss_pred CEEEEEeCCCEEEEEEcCC--CCCceEEEecCCCcccCeEE---ECCCCCCEEEEEEEECCEEEEE---EEeCCEEEEEE
Q ss_pred EECCCCceEEec-cCCCCCCCCCCCCceEEEE--EcCceEEEEEcCCCCCCCceEEEEECCCCCCCCCcccCCc
Q 010847 266 LNMTKLAWSILT-SVKGRNPLASEGLSVCSAI--IEGEHHLVAFGGYNGKYNNEVFVMRLKPRDIPRPKIFQSP 336 (499)
Q Consensus 266 ~d~~~~~W~~l~-~~~~~~p~~~~~~~~~~~~--~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 336 (499)
+|+.+.....++ ..+... +..... .++...++.+.+... ..++|.||+.+.+|........+
T Consensus 343 ~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~ss~~~--P~~~y~~d~~~~~~~~l~~~~~~ 407 (686)
T PRK10115 343 INRKTREVIGIAFDDPAYV-------TWIAYNPEPETSRLRYGYSSMTT--PDTLFELDMDTGERRVLKQTEVP 407 (686)
T ss_pred EcCCCCceEEecCCCCceE-------eeecccCCCCCceEEEEEecCCC--CCEEEEEECCCCcEEEEEecCCC
No 473
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=73.81 E-value=23 Score=30.06 Aligned_cols=65 Identities=20% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHhHHH
Q 010847 408 REKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI-----AELQKMLESSQTIENEVQILRQQKSA 472 (499)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~e~~~~l~~~~~~~~e~~~~~~~~~~ 472 (499)
+.+-++++.++.+.+.|++.+++-|...+.++.+|+++| .++++.+-+--+-.+.-..+..|+..
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~gqKTs 97 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYKGQKTS 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHHHHHHH
No 474
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.76 E-value=61 Score=28.27 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Q 010847 390 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ--TIENEVQILR 467 (499)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~--~~~~e~~~~~ 467 (499)
+.+++......+....+++.+++..++. +...++.+.++++..++++++++.+.-.+++... .+.-+..+..
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~------~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKS------EFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HhHHHHHHHHHHhhcc
Q 010847 468 QQKSAFEQEMERATSV 483 (499)
Q Consensus 468 ~~~~~~~~~~~~~~~~ 483 (499)
.+....+...++.+.+
T Consensus 120 ~e~~~~~~ki~e~~~k 135 (177)
T PF07798_consen 120 EEQAKQELKIQELNNK 135 (177)
T ss_pred HHHHHHHHHHHHHHHH
No 475
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=73.68 E-value=31 Score=34.03 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHhhccchHHHHHHHHHHH---------HHHHhhhhhhHHHHHHHHHHHHHHhHH-----------HHH
Q 010847 401 RTENSRFREKIDEVNSTHSELSKELSSVQG---------QLVAERSRCFKLEAQIAELQKMLESSQ-----------TIE 460 (499)
Q Consensus 401 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~~~l~~~~-----------~~~ 460 (499)
+....-+++++++.+.++.+.++++++.+. +.....+...+++.++.+++.++..+. .++
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~ 248 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ 248 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Q ss_pred HHHHHHHHhHHHHHHHH
Q 010847 461 NEVQILRQQKSAFEQEM 477 (499)
Q Consensus 461 ~e~~~~~~~~~~~~~~~ 477 (499)
.++..++++++++...+
T Consensus 249 ~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 249 ARIKSLRKQIDEQRNQL 265 (362)
T ss_pred HHHHHHHHHHHHHHHHh
No 476
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.59 E-value=56 Score=33.39 Aligned_cols=104 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQT 458 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~ 458 (499)
|-..|-.|+.+...+...+...+.+..++....+......+..+-+--.++.++...+.|+..+-+.--|++++-=.+|+
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQK 184 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQK 184 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc
Q 010847 459 IENEVQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 459 ~~~e~~~~~~~~~~~~~~~~~~~~ 482 (499)
...-+.+-|-+-+.+..+..++++
T Consensus 185 qVs~LR~sQVEyEglkheikRleE 208 (772)
T KOG0999|consen 185 QVSNLRQSQVEYEGLKHEIKRLEE 208 (772)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHH
No 477
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.57 E-value=71 Score=28.94 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHhHHHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE--RSRCFKLEAQIAELQKMLESSQTIEN 461 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~l~~~~~~~~ 461 (499)
..|....++.+..+.+.+.............+.++.+.++++......-... ..+..-...-+.++......+..+++
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~ 105 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQ 105 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHhhccccc
Q 010847 462 EVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 462 e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
.+.++..+..++...+.++.....+
T Consensus 106 ~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 106 QLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=73.55 E-value=46 Score=27.51 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-----------------HHHHHHHHHHH
Q 010847 406 RFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-----------------TIENEVQILRQ 468 (499)
Q Consensus 406 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-----------------~~~~e~~~~~~ 468 (499)
.|...++-.+........++...+.+++..+.++..+.....+..+++.... .+...+.+..+
T Consensus 3 ~L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~g~~~~~l~~~~~f~~~l~~~i~~q~~ 82 (141)
T TIGR02473 3 RLQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQALEKVGAGTSALELSNYQRFIRQLDQRIQQQQQ 82 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhhcc
Q 010847 469 QKSAFEQEMERATSV 483 (499)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (499)
.+...+.++++.+..
T Consensus 83 ~l~~~~~~~e~~r~~ 97 (141)
T TIGR02473 83 ELALLQQEVEAKRER 97 (141)
T ss_pred HHHHHHHHHHHHHHH
No 479
>PRK01156 chromosome segregation protein; Provisional
Probab=73.54 E-value=51 Score=37.16 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 383 IDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 383 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
++.-......+...+.....+...++.++......+.+..++++....++...+.....++..+..+.........++++
T Consensus 178 ~~~ei~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~ 257 (895)
T PRK01156 178 LRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESE 257 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHhhc
Q 010847 463 VQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~ 482 (499)
+.++...+..+++..++...
T Consensus 258 i~ele~~l~el~~~~~el~~ 277 (895)
T PRK01156 258 IKTAESDLSMELEKNNYYKE 277 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 480
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.54 E-value=54 Score=34.62 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH------HH
Q 010847 375 SEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI------AE 448 (499)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~e 448 (499)
+...+..+....+.+.+.+...+.....+......+++.......+...+++++..+.++..+-+..+.... ..
T Consensus 166 s~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~ 245 (716)
T KOG4593|consen 166 SLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKN 245 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 010847 449 LQKMLESSQTIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 449 ~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~ 478 (499)
.+.+++++..+++++.++..++..+.+-++
T Consensus 246 ~~dqlqel~~l~~a~~q~~ee~~~~re~~~ 275 (716)
T KOG4593|consen 246 MKDQLQELEELERALSQLREELATLRENRE 275 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 481
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=73.49 E-value=6.5 Score=33.66 Aligned_cols=61 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcccc
Q 010847 424 ELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQT 485 (499)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~ 485 (499)
.|+.++..+-+.-||-.-||.+|+|++.-..+.|.|..|+..|.+++ .+.+.+........
T Consensus 1 SLeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~~~~~~~ 61 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL-IVQEKLRKANRKSR 61 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----------------------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhcccC
No 482
>PRK04406 hypothetical protein; Provisional
Probab=73.42 E-value=18 Score=26.46 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred HhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 010847 394 ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQ 450 (499)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 450 (499)
+........+...|+.++.-.+..++++.+.+-+.++++..+++++..+..++.+.+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 483
>PRK10780 periplasmic chaperone; Provisional
Probab=73.38 E-value=25 Score=30.23 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred hHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 010847 397 LTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQE 476 (499)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~ 476 (499)
.+..-.+..+.+.--..++......+.+++....+++.+.++.++-...+.+.+++ ...+++.+..+++++..+..+++
T Consensus 31 ~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~-~~~~el~~~~~~~q~~~~~~qq~ 109 (165)
T PRK10780 31 MGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRT-KLEKDVMAQRQTFSQKAQAFEQD 109 (165)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhccccc
Q 010847 477 MERATSVQTQ 486 (499)
Q Consensus 477 ~~~~~~~q~q 486 (499)
++..++...+
T Consensus 110 ~~~~~~e~~~ 119 (165)
T PRK10780 110 RRRRSNEERN 119 (165)
T ss_pred HHHHHHHHHH
No 484
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.30 E-value=68 Score=34.37 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhh------------hhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTEN------------SRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (499)
++.+-.+|..+.|.+.+.+.+..... ..|+..--.++.+++|..+.++.++..++++.+-++.++.+-
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~En 471 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEEN 471 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHHh
Q 010847 447 AELQKMLESSQ-TIENEVQILRQQKSAFEQEMERA 480 (499)
Q Consensus 447 ~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~~~ 480 (499)
+.+.+.+++.. ++.+-.+++.-+...+..|++++
T Consensus 472 k~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~ea 506 (861)
T PF15254_consen 472 KRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEA 506 (861)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
No 485
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=73.08 E-value=56 Score=32.59 Aligned_cols=94 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh-----------------hhhhhH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE-----------------RSRCFK 441 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 441 (499)
++.+++..+.-+.+++..+.+...+...++..++.++..+.++..-+.-.+..++.- ...+.+
T Consensus 249 l~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~ 328 (384)
T PF03148_consen 249 LRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKE 328 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Q 010847 442 LEAQIAELQKMLESSQTIENEVQILRQQKSA 472 (499)
Q Consensus 442 ~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~ 472 (499)
++..+..++++|.+.+...+.+...+.+++.
T Consensus 329 l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~ 359 (384)
T PF03148_consen 329 LRESIEALQEKLDEAEASLQKLERTRLRLEE 359 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.04 E-value=70 Score=28.67 Aligned_cols=104 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH-HHHHH
Q 010847 384 DAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ-TIENE 462 (499)
Q Consensus 384 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~-~~~~e 462 (499)
..+.....+.-+.+.+...+.+.|.+.+.+.+.++.+..+-+++....+...+..+...++++.-+.+.+|.+. ++..-
T Consensus 40 ~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ 119 (246)
T KOG4657|consen 40 RRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDS 119 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHHHhHHHHHHHHHHhhcccccCC
Q 010847 463 VQILRQQKSAFEQEMERATSVQTQGS 488 (499)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~q~q~~ 488 (499)
.+.+.++.+.+.+..+..-++ .|.+
T Consensus 120 keiIs~kr~~~~Ka~e~~~kR-kQds 144 (246)
T KOG4657|consen 120 KEIISQKRQALSKAKENAGKR-KQDS 144 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhhh
No 487
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.04 E-value=90 Score=29.92 Aligned_cols=197 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred CceEEeeeCcccccCccccCCCCCCCCCccceeEEEECCEEEEEcccCCCCCCCceEEEEECCCCcEEEeecCCCCCCCC
Q 010847 55 LAWSNLRLETELDADKTEDSGLLEVLPPMSDHCMVKWGTKLLILGGHYKKSSDSMIVRFIDLETNLCGVMETSGKVPVAR 134 (499)
Q Consensus 55 ~~W~~~~~~~~~~~~~~~~~~~~~~p~~r~~~s~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~t~~W~~~~~~g~~p~~r 134 (499)
.+|..++... +.+-..+.+...++.-.++.|..+. +++=.=.-.+|+.+. .....-
T Consensus 91 ~tW~~v~l~~---------------~lpgs~~~i~~l~~~~~~l~~~~G~------iy~T~DgG~tW~~~~---~~~~gs 146 (302)
T PF14870_consen 91 KTWERVPLSS---------------KLPGSPFGITALGDGSAELAGDRGA------IYRTTDGGKTWQAVV---SETSGS 146 (302)
T ss_dssp SS-EE----T---------------T-SS-EEEEEEEETTEEEEEETT--------EEEESSTTSSEEEEE----S----
T ss_pred CCcEEeecCC---------------CCCCCeeEEEEcCCCcEEEEcCCCc------EEEeCCCCCCeeEcc---cCCcce
Q ss_pred cceEEEEECCEEEEEcCcCCCCCccCcEEEEECCCCeeEEeeecCCCCCCCccceEEEEcCcEEEEEcCCCCCCCCCcEE
Q 010847 135 GGHSVTLVGSRLIIFGGEDRSRKLLNDVHFLDLETMTWDAVEVTQTPPAPRYDHSAALHANRYLIVFGGCSHSIFFNDLH 214 (499)
Q Consensus 135 ~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~~~~p~~r~~~~~~~~~~~~l~v~GG~~~~~~~~~i~ 214 (499)
.......-++++++++..+.- ....|+....|.... .+..|+-.++....++.|+++.--. .+.
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~------~~s~~~G~~~w~~~~----r~~~~riq~~gf~~~~~lw~~~~Gg------~~~ 210 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNF------YSSWDPGQTTWQPHN----RNSSRRIQSMGFSPDGNLWMLARGG------QIQ 210 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSE------EEEE-TT-SS-EEEE------SSS-EEEEEE-TTS-EEEEETTT------EEE
T ss_pred eEeEEECCCCcEEEEECcccE------EEEecCCCccceEEc----cCccceehhceecCCCCEEEEeCCc------EEE
Q ss_pred EEE--CCCCceEecccCCCCCCcCcccEEEEE----CCEEEEEeCCCCCCCcceEEEEECCCCceEEeccCCCCCCCCCC
Q 010847 215 VLD--LQTNEWSQPEIKGDLVTGRAGHAGITI----DENWYIVGGGDNNNGCQETIVLNMTKLAWSILTSVKGRNPLASE 288 (499)
Q Consensus 215 ~~d--~~~~~W~~~~~~~~~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~d~~~~~W~~l~~~~~~~p~~~~ 288 (499)
.-+ -...+|.+ +..|....++...-+ ++.+++.|| ...+++=.-.-.+|++.+......
T Consensus 211 ~s~~~~~~~~w~~----~~~~~~~~~~~~ld~a~~~~~~~wa~gg------~G~l~~S~DgGktW~~~~~~~~~~----- 275 (302)
T PF14870_consen 211 FSDDPDDGETWSE----PIIPIKTNGYGILDLAYRPPNEIWAVGG------SGTLLVSTDGGKTWQKDRVGENVP----- 275 (302)
T ss_dssp EEE-TTEEEEE-------B-TTSS--S-EEEEEESSSS-EEEEES------TT-EEEESSTTSS-EE-GGGTTSS-----
T ss_pred EccCCCCcccccc----ccCCcccCceeeEEEEecCCCCEEEEeC------CccEEEeCCCCccceECccccCCC-----
Q ss_pred CCceEEEEEcCceEEEEEc
Q 010847 289 GLSVCSAIIEGEHHLVAFG 307 (499)
Q Consensus 289 ~~~~~~~~~~~~~~l~v~G 307 (499)
.....+...+.+.-+|+|
T Consensus 276 -~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 276 -SNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp -S---EEEEEETTEEEEE-
T ss_pred -CceEEEEEcCCCceEEEC
No 488
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=72.75 E-value=32 Score=32.38 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCccccCCCCCeEEcccCCCCCCcccc---eEEEEcCCCCCcccCcEEEEEcCCCce--EEeeeCcccccCccccCCCCC
Q 010847 4 GSWHLELPYDLWVTLPVSGARPSPRYK---KLYIVGGSRNGRFLSDVQVFDLRSLAW--SNLRLETELDADKTEDSGLLE 78 (499)
Q Consensus 4 ~~~~~~~~~~~W~~~~~~~~~p~~r~~---~l~~~GG~~~~~~~~~~~~yd~~t~~W--~~~~~~~~~~~~~~~~~~~~~ 78 (499)
|.|..|..+++=..|. .-|.+.-. ..-+||=.+...-.+.+.+||+.+++| ...+.....+ +.
T Consensus 132 Gvy~ldr~~g~~~~L~---~~ps~KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~D---------g~ 199 (339)
T PF09910_consen 132 GVYSLDRRTGKAEKLS---SNPSLKGTLVHDYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVD---------GG 199 (339)
T ss_pred eeEEEcccCCceeecc---CCCCcCceEeeeeEEEeccccccCCceEEEEEccCCeEEEEecccccCCC---------CC
Q ss_pred CCCCccceeEEEECCEEEEE--cccCCCCCCCceEEEEECCCC
Q 010847 79 VLPPMSDHCMVKWGTKLLIL--GGHYKKSSDSMIVRFIDLETN 119 (499)
Q Consensus 79 ~p~~r~~~s~~~~~~~iyv~--GG~~~~~~~~~~~~~yd~~t~ 119 (499)
+...|..-.++.+.|++|.| || +.+.||...
T Consensus 200 ~~~~~~~G~~~s~ynR~faF~rGG----------i~vgnP~~~ 232 (339)
T PF09910_consen 200 PVIRPELGAMASAYNRLFAFVRGG----------IFVGNPYNG 232 (339)
T ss_pred ceEeeccccEEEEeeeEEEEEecc----------EEEeCCCCC
No 489
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=72.70 E-value=20 Score=25.52 Aligned_cols=56 Identities=18% Similarity=0.311 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
|...+.....+.+++..++...+++++..++...+....-...+++|.....|...
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~Q 56 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQ 56 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK09343 prefoldin subunit beta; Provisional
Probab=72.63 E-value=50 Score=26.76 Aligned_cols=92 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHH---------------HHHHHHHHHHhhhhhhHHH
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKE---------------LSSVQGQLVAERSRCFKLE 443 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 443 (499)
++.+++..-..-+.++..+.....+...++..+.+.+..+.++..- .+........+.+|.+.++
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 010847 444 AQIAELQKMLESSQTIENEVQILRQQK 470 (499)
Q Consensus 444 ~~~~e~~~~l~~~~~~~~e~~~~~~~~ 470 (499)
..+..++++...+++..++++.-.+++
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.50 E-value=51 Score=26.87 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 010847 390 KRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQ 469 (499)
Q Consensus 390 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~ 469 (499)
|+.+.........+..++-+.+...++.+... ++.+-..+++..+..+..+.++.+++..+..+..--+.+++.-+.
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqR---Id~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~ 114 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQR---IDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEG 114 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh
Q 010847 470 KSAFEQEMERAT 481 (499)
Q Consensus 470 ~~~~~~~~~~~~ 481 (499)
++..-.+++.-+
T Consensus 115 Le~ki~~ie~~Q 126 (126)
T PF07889_consen 115 LEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHhcCC
No 492
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.45 E-value=11 Score=35.37 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 010847 395 LSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFE 474 (499)
Q Consensus 395 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~ 474 (499)
..+...-.+...+- .+.......++...+....+.+++.++..++++...+.+-+ ..+.+-++++++.+.+.++++++
T Consensus 105 ~~~~~~l~~l~~~g-~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~ 182 (262)
T PF14257_consen 105 DKFDSFLDELSELG-KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLE 182 (262)
T ss_pred HHHHHHHHHHhccC-ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhcc
Q 010847 475 QEMERATSV 483 (499)
Q Consensus 475 ~~~~~~~~~ 483 (499)
.++..+..+
T Consensus 183 ~~~~~l~~~ 191 (262)
T PF14257_consen 183 GQLKYLDDR 191 (262)
T ss_pred HHHHHHHHh
No 493
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.33 E-value=44 Score=26.00 Aligned_cols=72 Identities=24% Similarity=0.308 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH---------------------------------HHHHHHHH
Q 010847 419 SELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ---------------------------------TIENEVQI 465 (499)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~---------------------------------~~~~e~~~ 465 (499)
++...+++.++.++.....+...++.++.+.+.-+.++. .+++++..
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHHHHHhhcccccCCCc
Q 010847 466 LRQQKSAFEQEMERATSVQTQGSGG 490 (499)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~q~q~~~~ 490 (499)
+..++..++.+++++.....+.-++
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~~~~ 105 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYELFGQ 105 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
No 494
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=72.16 E-value=60 Score=31.76 Aligned_cols=113 Identities=5% Similarity=-0.002 Sum_probs=0.0
Q ss_pred cccccchhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHh----------hhhhhHHH
Q 010847 374 LSEKDVRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAE----------RSRCFKLE 443 (499)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 443 (499)
.+...+..++.+++.+....+..+...+......+..++..+.++...+.+++..+.+++.. +...++.+
T Consensus 79 ld~~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~ 158 (346)
T PRK10476 79 IDPRPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQAR 158 (346)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHH
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 444 AQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 444 ~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
..+...+.+++..+...+........+...+.+++.++....+
T Consensus 159 ~~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~ 201 (346)
T PRK10476 159 TAQRDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAI 201 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
No 495
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=72.07 E-value=25 Score=27.77 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=0.0
Q ss_pred hHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 010847 407 FREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENEVQILRQQKSAFEQEMERATSV 483 (499)
Q Consensus 407 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 483 (499)
|-..+........+..+++..++.+.-..+.+-.++-.++.++.++...... .....++++.++.+++..+++
T Consensus 1 Ls~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~ 73 (106)
T PF05837_consen 1 LSLEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQR 73 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHH
No 496
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=71.96 E-value=44 Score=38.11 Aligned_cols=108 Identities=20% Similarity=0.140 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH----
Q 010847 379 VRTDIDAIKEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLE---- 454 (499)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~---- 454 (499)
+..+...++.+...++..+.......+-.+.+.+..+.+++..+++++.+++.+-..+.++.+...+..+...+..
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~ 257 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLP 257 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCC
Q ss_pred -hHHHHHHHHHHHHHhHHHHHHHHHHhhccccc
Q 010847 455 -SSQTIENEVQILRQQKSAFEQEMERATSVQTQ 486 (499)
Q Consensus 455 -~~~~~~~e~~~~~~~~~~~~~~~~~~~~~q~q 486 (499)
.++++.+..+++-+++.+..+..+.+.+++++
T Consensus 258 ~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~ 290 (1109)
T PRK10929 258 KSIVAQFKINRELSQALNQQAQRMDLIASQQRQ 290 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=71.90 E-value=11 Score=37.60 Aligned_cols=75 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHHHHHHH
Q 010847 387 KEDKRVLELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQTIENE 462 (499)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~e 462 (499)
|.+.+.++.+..+.+.....-+.. ...++.++-++..+.....+++++++++++|+.+-+-+.+||+++|.+..+
T Consensus 244 KaEEriLKrvRRKIrNK~SAQESR-rkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q 318 (472)
T KOG0709|consen 244 KAEERILKRVRRKIRNKRSAQESR-RKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQ 318 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHH-HhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
No 498
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=71.88 E-value=38 Score=28.82 Aligned_cols=61 Identities=15% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhHH------HHHHHHHHHHHhHHHHHHHHHHhhc
Q 010847 422 SKELSSVQGQLVAERSRCFKLEAQIAELQKMLESSQ------TIENEVQILRQQKSAFEQEMERATS 482 (499)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~------~~~~e~~~~~~~~~~~~~~~~~~~~ 482 (499)
..+++.+...+..+.++.+.++....-.+-+++.++ +++++++.|.++...-++-++...+
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=71.67 E-value=89 Score=33.16 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=0.0
Q ss_pred ccccchhhHHHHHHHHHHH--------HhhhHHHHHhhhhhHHHHHHhhccchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 010847 375 SEKDVRTDIDAIKEDKRVL--------ELSLTEVRTENSRFREKIDEVNSTHSELSKELSSVQGQLVAERSRCFKLEAQI 446 (499)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (499)
+..++..+++++.+++..+ ..+..+...-.++...+++.+......++++++..++.+....+..+..+..+
T Consensus 472 ~~~dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 472 SVTDLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHH
Q 010847 447 AELQKMLESSQ-TIENEVQILRQQKSAFEQEME 478 (499)
Q Consensus 447 ~e~~~~l~~~~-~~~~e~~~~~~~~~~~~~~~~ 478 (499)
++.+.+.-.+. .+....+.+.+.++..-.+++
T Consensus 552 qes~eea~~lR~EL~~QQ~~y~~alqekvsevE 584 (739)
T PF07111_consen 552 QESTEEAAELRRELTQQQEVYERALQEKVSEVE 584 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.63 E-value=29 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhHH----HHHHHHHHHHHhHHHHHHHHHHhhccc
Q 010847 433 VAERSRCFKLEAQIAELQKMLESSQ----TIENEVQILRQQKSAFEQEMERATSVQ 484 (499)
Q Consensus 433 ~~~~~~~~~~~~~~~e~~~~l~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~q 484 (499)
....+|+.+||.++.-.+.-+.++. +.++++..+++++..+.+.+.+.....
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Done!