BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010848
         (499 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score =  162 bits (409), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 216/496 (43%), Gaps = 63/496 (12%)

Query: 26  FSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQ-----SSFLQETIVSMA 80
           +++ Y+  +T++A +GGLLFGYDT VISG +  +   F A        ++ L    V+ A
Sbjct: 5   YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASA 64

Query: 81  LVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI--------IMAAAPDPYXXXXXXX 132
           L+G I+G A GG+ ++ +GR+ +  +A V+F    +          +  PD         
Sbjct: 65  LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG 124

Query: 133 XXXXXXX----------XASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLA 182
                             AS+ +P+YIAE +P+ +RG LVS N   I  GQ L Y VN  
Sbjct: 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY- 183

Query: 183 FTEVPGT--------WRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKI 234
           F    G         WR+M     +PA++  +L+  +PESPRWL  +  +E+A  +L KI
Sbjct: 184 FIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243

Query: 235 YDIARLEDEIDHLSAAAEEELRK-----KKTVRYLDVFKSKEIRXXXXXXXXXXXXXXXX 289
                     + L+  A +E++      +KT   L +F    I                 
Sbjct: 244 MG--------NTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVI----VIGVMLSIFQQFV 291

Query: 290 XINTVMYYSPTIVQMAGFQSNQXXXXXXXXXXGTNAVGTIVGIYLIDHFGRKKLALSSLA 349
            IN V+YY+P + +  G  S              N   T++ I  +D FGRK L +    
Sbjct: 292 GINVVLYYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGAL 350

Query: 350 GVIISLVLLSWAFIXXXXXXXXXVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQY 409
           G+ I +  L  AF            G +A++ +  Y+A FA   GPV W L SE++P   
Sbjct: 351 GMAIGMFSLGTAFYTQAP-------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI 403

Query: 410 RGICGGMSATVNWISNLIVAQTFLTVAE---LVG---TGATXXXXXXXXXXXXXXXXXXX 463
           RG    ++    W++N  V+ TF  + +   LV     G +                   
Sbjct: 404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463

Query: 464 PETQGLTFLEVEQMWK 479
           PET+G T  E+E +W+
Sbjct: 464 PETKGKTLEELEALWE 479


>pdb|2V3Q|A Chain A, Serendipitous Discovery And X-Ray Structure Of A Human
           Phosphate Binding Apolipoprotein
          Length = 376

 Score = 30.0 bits (66), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 26  FSNMYVLGLTVIAGI-------GGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVS 78
           F+N Y LGLT +AG        G +    DT V  G + YI  DF A   +     T V+
Sbjct: 171 FANSYSLGLTPLAGAVAATGSDGVMAALNDTTVAEGRITYISPDFAAPTLAGLDDATKVA 230

Query: 79  MALVGAIVGAA 89
               G + G A
Sbjct: 231 RVGKGVVNGVA 241


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,935,177
Number of Sequences: 62578
Number of extensions: 408386
Number of successful extensions: 802
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 793
Number of HSP's gapped (non-prelim): 4
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)