Query 010848
Match_columns 499
No_of_seqs 222 out of 2488
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:32:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.5E-53 1.9E-57 434.1 45.2 443 25-482 4-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 5.6E-35 1.9E-39 296.3 22.5 400 29-462 24-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 7.2E-32 2.5E-36 272.5 33.1 367 33-455 26-425 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 4E-27 1.4E-31 241.4 30.7 391 68-469 51-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3E-29 1E-33 248.1 8.1 354 37-446 4-360 (375)
6 2xut_A Proton/peptide symporte 99.9 1.6E-23 5.4E-28 216.5 23.9 153 57-210 37-197 (524)
7 2cfq_A Lactose permease; trans 99.9 1.2E-25 4E-30 225.7 4.8 363 59-471 34-408 (417)
8 2cfq_A Lactose permease; trans 99.2 1.5E-10 5.1E-15 115.5 12.0 143 73-216 261-405 (417)
9 1pw4_A Glycerol-3-phosphate tr 99.1 7E-10 2.4E-14 111.5 16.0 155 52-210 271-432 (451)
10 3o7q_A L-fucose-proton symport 99.0 2.2E-09 7.5E-14 107.4 14.0 134 70-206 294-427 (438)
11 2gfp_A EMRD, multidrug resista 98.9 8.5E-10 2.9E-14 108.1 7.2 161 296-469 21-181 (375)
12 4aps_A DI-OR tripeptide H+ sym 98.9 5.8E-09 2E-13 106.1 13.3 135 74-210 322-470 (491)
13 4gc0_A D-xylose-proton symport 98.9 1.8E-08 6E-13 102.5 14.5 140 76-215 317-467 (491)
14 2xut_A Proton/peptide symporte 98.9 1.2E-08 4E-13 104.8 12.6 158 296-465 33-201 (524)
15 2g9p_A Antimicrobial peptide l 51.8 7 0.00024 19.9 1.3 14 90-103 2-15 (26)
16 4dve_A Biotin transporter BIOY 23.5 1.2E+02 0.0039 25.8 5.2 25 77-101 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.5e-53 Score=434.05 Aligned_cols=443 Identities=34% Similarity=0.611 Sum_probs=347.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhcccc-----ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 010848 25 YFSNMYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVN-----QSSFLQETIVSMALVGAIVGAASGGWINDAYG 99 (499)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~-----~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~G 99 (499)
.+++++++.+++++++|++++|||.++++.++|.++++|+..+ .++..++++++++.+|+++|++++|+++||+|
T Consensus 4 ~~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred CcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456778888889999999999999999999999998885432 23445688999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH------------------hcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccch
Q 010848 100 RKKATLLADVVFTAGAIIMA------------------AAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGL 161 (499)
Q Consensus 100 rr~~l~~~~~l~~~~~~~~~------------------~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~ 161 (499)
||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+..+++++|++|+++|++.
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~ 163 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKL 163 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhh
Confidence 99999999999999999999 478999999999999999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHHHHHhhhhccCC-------CCchHHHHHhhhHHHHHHHHHHHhccCChhHHhhcCCHHHHHHHHHHh
Q 010848 162 VSTNVLMITSGQFLSYLVNLAFTEV-------PGTWRWMLGVSAVPAIIQFVLMLFMPESPRWLFMKSDKEKAILVLSKI 234 (499)
Q Consensus 162 ~~~~~~~~~~G~~l~~~~~~~~~~~-------~~~Wr~~f~~~~~~~~l~~~~~~~lpesp~~l~~~~~~~~a~~~~~~~ 234 (499)
.+........|.++++..+...... ...||+.+.+..++.++.++..+++||||+|+..+++.+++.+.+++.
T Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~ 243 (491)
T 4gc0_A 164 VSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHh
Confidence 9999999999999888877654321 235899999999999988888899999999999999999999988877
Q ss_pred hChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHHcCCCCchHHH
Q 010848 235 YDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFQSNQLAL 314 (499)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~~~~~~~~ 314 (499)
.......++..+..+..+++ ++.......++.++. ........++++.+.+.+.+|.|.+.+..+.+.... .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 315 (491)
T 4gc0_A 244 MGNTLATQAVQEIKHSLDHG---RKTGGRLLMFGVGVI----VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIA-L 315 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHTTHHHHSCCTHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHH-H
T ss_pred cCCchhHHHHHHHHHHHHhh---hhhhhHHHHhcccHH----HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccch-h
Confidence 65544333332222211111 111222223333322 223334466777788888888999888888765443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccc
Q 010848 315 LLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMG 394 (499)
Q Consensus 315 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (499)
...........++.+++++++||+|||+.+..+.....+++..+........ ..+..+....++...+..+.+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 388 (491)
T 4gc0_A 316 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------PGIVALLSMLFYVAAFAMSWG 388 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHhHHH
Confidence 4445555667889999999999999999988877777766665554332221 123334445555566777888
Q ss_pred ccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCchhhHHHHHHHHHHHHHHHHhcccCCC
Q 010848 395 PVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAE------LVGTGATFLILAGIAVLAVVFVILFVPETQG 468 (499)
Q Consensus 395 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~------~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~ 468 (499)
++.+.+.+|++|++.|+++.|++...+++++++.+..++.+.+ ..+....|++++++++++.++.++++|||||
T Consensus 389 ~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 389 PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 8999999999999999999999999999999998888776532 3456678899999999999999999999999
Q ss_pred CCHHHHHHHhhccc
Q 010848 469 LTFLEVEQMWKERA 482 (499)
Q Consensus 469 ~~l~~~~~~~~~~~ 482 (499)
|++||+|++|+++.
T Consensus 469 ~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 469 KTLEELEALWEPET 482 (491)
T ss_dssp CCHHHHGGGTC---
T ss_pred CCHHHHHHHhCCCC
Confidence 99999999997654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.6e-35 Score=296.32 Aligned_cols=400 Identities=15% Similarity=0.122 Sum_probs=280.8
Q ss_pred hHHHHHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHH
Q 010848 29 MYVLGLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLAD 108 (499)
Q Consensus 29 ~~~~~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~ 108 (499)
+..+.......++.+..+++...++..+|.+.+|+ . +....+++.+++.++..++++++|+++||+|||+++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F---SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c---cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 34455666677788999999999999999998887 4 2233688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc
Q 010848 109 VVFTAGAIIMAA----APDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT 184 (499)
Q Consensus 109 ~l~~~~~~~~~~----a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~ 184 (499)
++++++++++++ +++++.++++|+++|++.|...+...++++|++|+|+|++..+.......+|..+++.++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999998886654
Q ss_pred CCCCchHHHHHhhhHHHHHHHHH-HHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccch
Q 010848 185 EVPGTWRWMLGVSAVPAIIQFVL-MLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRY 263 (499)
Q Consensus 185 ~~~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (499)
+..++||+.|++.+++.++..++ .+++||+|+....+++++... +.+++. ++.+++....++...
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~----~~~~~~~~~~~~~~~ 245 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------DYPDDY----NEKAEQELTAKQIFM 245 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C-----------------CCTHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------cccccc----hhhhhcccccccchH
Confidence 32223999999988877665444 567899887543222111000 000000 000000111111113
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CC
Q 010848 264 LDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF--GR 340 (499)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr 340 (499)
++.+++|.++...+..... .........+.|.++++ .|.+....+..... ...+..++.++.+++.||+ +|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 246 QYVLPNKLLWYIAIANVFV-----YLLRYGILDWSPTYLKEVKHFALDKSSWAYFL-YEYAGIPGTLLCGWMSDKVFRGN 319 (451)
T ss_dssp HHTSSCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHcCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667777766544432221 12233445667777776 67776666655544 4455789999999999999 99
Q ss_pred hHHHHHhhHHHH-HHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHH
Q 010848 341 KKLALSSLAGVI-ISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSAT 419 (499)
Q Consensus 341 r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 419 (499)
|+.+..+..... ++.+++. ...+ .. . +...... +...+...+..+..+.+..|.+|++.|+++.|+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~----~~~~--~~--~-~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 320 RGATGVFFMTLVTIATIVYW----MNPA--GN--P-TVDMICM-IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----SCCT--TC--H-HHHHHHH-HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHH----Hhcc--cC--H-HHHHHHH-HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 987765543333 2222211 1110 01 1 1111111 112222223345556788999999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHh
Q 010848 420 VNWI-SNLIVAQTFLTVAELVGTGATFLILAGIAVLAVVFVILF 462 (499)
Q Consensus 420 ~~~l-~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 462 (499)
...+ +..+++.+.+.+.+..++...|++.+++.+++.+..++.
T Consensus 390 ~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 390 FGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999988898888888888888887776655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.2e-32 Score=272.46 Aligned_cols=367 Identities=14% Similarity=0.129 Sum_probs=265.6
Q ss_pred HHHHHHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHH
Q 010848 33 GLTVIAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFT 112 (499)
Q Consensus 33 ~~~~~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~ 112 (499)
.....+++..+..+++...++..+|.+.++++. +....+++.+.+.+++.++++++|+++||+|||+++.++.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTL---TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 334455567788899999999999999999865 34456889999999999999999999999999999999999999
Q ss_pred HHHHHH---HhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhcc-CCCC
Q 010848 113 AGAIIM---AAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFT-EVPG 188 (499)
Q Consensus 113 ~~~~~~---~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~-~~~~ 188 (499)
++++++ +++++++.+++.|+++|++.|...+...++++|++|+|+|++.++.......+|..+++.++..+. ...+
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999 899999999999999999999999999999999999999999999999999999999999887776 4433
Q ss_pred c------------------------hHHHHHhhhHHHHHHHHHHHh--ccCChhHHhhcCCHHHHHHHHHHhhChhhHHH
Q 010848 189 T------------------------WRWMLGVSAVPAIIQFVLMLF--MPESPRWLFMKSDKEKAILVLSKIYDIARLED 242 (499)
Q Consensus 189 ~------------------------Wr~~f~~~~~~~~l~~~~~~~--lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 242 (499)
. ||+.|++.+...++..+..++ .||+++.. +++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~---------------- 243 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HSDAK---------------- 243 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CCCSS----------------
T ss_pred cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---ccccc----------------
Confidence 3 999998877666554444333 46665421 00000
Q ss_pred HHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCcceehhchHHH-HHHc-CCCCchHHHHHHHHH
Q 010848 243 EIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGINTVMYYSPTI-VQMA-GFQSNQLALLLSLAV 320 (499)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~-g~~~~~~~~~~~~~~ 320 (499)
+++...++++++++|+++...+...... ........+.|.+ +++. |.+....+..... .
T Consensus 244 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 304 (438)
T 3o7q_A 244 -------------QGSFSASLSRLARIRHWRWAVLAQFCYV-----GAQTACWSYLIRYAVEEIPGMTAGFAANYLTG-T 304 (438)
T ss_dssp -------------TTSHHHHHHHHTTCSHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH-H
T ss_pred -------------ccchhhhHHHHHhChHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhccCCcchhHHHHHHHH-H
Confidence 0001123445677777666544322211 1222334566777 7665 7776666655544 4
Q ss_pred HHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhcccccccccc
Q 010848 321 AGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTL 400 (499)
Q Consensus 321 ~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (499)
..+..++.++++++.||++||+.+..+.....++.+++... . . . + ...... ...+......+..+++
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----~-----~-~-~-~~~~~~-~~g~~~~~~~~~~~~~ 371 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----G-----G-H-V-GLIALT-LCSAFMSIQYPTIFSL 371 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----C-----H-H-H-HHHHHH-HHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc----C-----C-c-H-HHHHHH-HHHHHHHHHHHHHHHH
Confidence 45578999999999999999998877665555544333221 1 0 1 1 111121 2223333445677788
Q ss_pred ccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchhhHHHHHHHHHH
Q 010848 401 NSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVG-TGATFLILAGIAVLA 455 (499)
Q Consensus 401 ~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~f~~~~~~~~~~ 455 (499)
..|.+|++ |+.+.+... .+.+++.+++.+.+.+.+..+ +...|++.++..++.
T Consensus 372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 88999987 888888776 677888889999998888888 777777655444433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=4e-27 Score=241.42 Aligned_cols=391 Identities=14% Similarity=0.093 Sum_probs=227.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHH
Q 010848 68 QSSFLQETIVSMALVGAIVGAASGGWINDA-YGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAP 146 (499)
Q Consensus 68 ~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr-~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~ 146 (499)
.+....+++.+.+.++..++++++|+++|| +|||+++..+.++..++++++++++|++.+++.|+++|++.|...+...
T Consensus 51 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 130 (491)
T 4aps_A 51 ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVS 130 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHH
Confidence 344556889999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcCc--ccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhc-cCCh----hHHh
Q 010848 147 VYIAEASPSEV--RGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFM-PESP----RWLF 219 (499)
Q Consensus 147 ~~i~e~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~l-pesp----~~l~ 219 (499)
++++|++|+++ |+...+.......+|..+++.++..+.+.. +||+.|++.++..++..+..++. |+.. +...
T Consensus 131 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (491)
T 4aps_A 131 TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPT 209 (491)
T ss_dssp HHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCS
T ss_pred HHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCC
Confidence 99999999998 666777788888999999998887765533 59999999877666555444322 2211 0000
Q ss_pred hcCCHHHHHHHHHH----------------hhChhhHHHHHH---HH--H--HHHHHHHhhhcccchhhhhcchhhHHHH
Q 010848 220 MKSDKEKAILVLSK----------------IYDIARLEDEID---HL--S--AAAEEELRKKKTVRYLDVFKSKEIRLAF 276 (499)
Q Consensus 220 ~~~~~~~a~~~~~~----------------~~~~~~~~~~~~---~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 276 (499)
.+.+.++..+..+. ..+..+.++... .. . ........+++.....+..+........
T Consensus 210 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (491)
T 4aps_A 210 DPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLF 289 (491)
T ss_dssp CCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHH
T ss_pred CccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 11122222221111 000000000000 00 0 0000000000000000000111111111
Q ss_pred HHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHH-----HhhHH
Q 010848 277 LAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLAL-----SSLAG 350 (499)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~-----~~~~~ 350 (499)
+..... . ........+.|.+.+. .+.+....+..... ......++..+.+++.||++||+... .+...
T Consensus 290 ~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 290 IAAVLF-W----AIEEQGSVVLATFAAERVDSSWFPVSWFQSL-NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHH-H----HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTH-HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHH-H----HHHhhccHHHHHHHHHHhccCccCHHHHhcc-chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 111111 1 1112223345556554 44442233333333 33345777888899999999986543 34433
Q ss_pred HHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHH
Q 010848 351 VIISLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQ 430 (499)
Q Consensus 351 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~ 430 (499)
..++..++.............. . +....... ..........+..+.+..|.+|++.|+++.|+.+....+++.+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~-l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVS-P-LWLVGSWA-LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCC-T-HHHHHHHH-HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcc-H-HHHHHHHH-HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333332211111001011 1 11122222 2222223345667789999999999999999999999999988887
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHhcccCCCC
Q 010848 431 TFLTVAELVGTGATFLILAGIAVLAVVFVILFVPETQGL 469 (499)
Q Consensus 431 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~pet~~~ 469 (499)
+.+.+.+ .++...|.+++++++++.+..+++.|+++++
T Consensus 441 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 441 LVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665543 4566678888888888877777777776554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=3e-29 Score=248.05 Aligned_cols=354 Identities=16% Similarity=0.151 Sum_probs=243.6
Q ss_pred HHHHHhhhhhhchhcchhhHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHH
Q 010848 37 IAGIGGLLFGYDTGVISGALLYIKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAI 116 (499)
Q Consensus 37 ~~~l~~~~~g~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~ 116 (499)
..+++.+..+++...+.+.+|.+.++++. +....+++.+.+.++..++++++|+++||+|||+++..+..+..++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 44567788888989999999998888764 344568899999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHh
Q 010848 117 IMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGV 196 (499)
Q Consensus 117 ~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~ 196 (499)
+.+++++++.+++.|+++|++.+...+....++.|++|+|+|++..+.......+|..+++.++..+.+. .+||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-WNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-HHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-ccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988877653 269999998
Q ss_pred hhHHHHHHHH-HHHhccCChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHH
Q 010848 197 SAVPAIIQFV-LMLFMPESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLA 275 (499)
Q Consensus 197 ~~~~~~l~~~-~~~~lpesp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 275 (499)
.++..++..+ ..+++||+|+...++ ++...+.++.+++|+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~ 204 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPR-----------------------------------TRLLTSYKTLFGNSGFNCY 204 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCC-----------------------------------CCTTTCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCCCccc-----------------------------------ccHHHHHHHHhcCcchHHH
Confidence 8877766555 345678886531100 0111234456666665554
Q ss_pred HHHHHHHHHHHhccCcceehhchHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHH-HHH
Q 010848 276 FLAGAGLQAFQQFTGINTVMYYSPTIVQM-AGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAG-VII 353 (499)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~-~~i 353 (499)
.+..... .........+.|.+.++ .|.+....+..... ...+..++.++.+++.||.+++.. .+... ...
T Consensus 205 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~-~~~~~~~~~~~~~~l~~r~~~~~~--~~~~~~~~~ 276 (375)
T 2gfp_A 205 LLMLIGG-----LAGIAAFEACSGVLMGAVLGLSSMTVSILFIL-PIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLA 276 (375)
T ss_dssp HHHHHHH-----HHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHTTTTHHHHHHH--HHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3332211 11222233445555443 56655555554443 334567788888888888876322 22211 111
Q ss_pred HHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010848 354 SLVLLSWAFISGSSASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFL 433 (499)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~ 433 (499)
+..++....... ...+.......+. .+......+....+..|.+| +.|+++.|+.+..+.++..+++....
T Consensus 277 ~~~~~~~~~~~~-------~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 277 GLLMWIPDWFGV-------MNVWTLLVPAALF-FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp SSSSSHHHHHHH-------HHHHHHHHHHHHH-HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHHhhhcc-------ccHHHHHHHHHHH-HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111000 0011111222222 22222345677788899998 89999999999999999888877776
Q ss_pred HHHHHcCCchhhH
Q 010848 434 TVAELVGTGATFL 446 (499)
Q Consensus 434 ~~~~~~~~~~~f~ 446 (499)
.+.+..++...+.
T Consensus 348 ~l~~~~~~~~~~~ 360 (375)
T 2gfp_A 348 MLPQTGQGSLGLL 360 (375)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhcCCcccHHHH
Confidence 6666554443333
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=1.6e-23 Score=216.48 Aligned_cols=153 Identities=14% Similarity=0.238 Sum_probs=128.6
Q ss_pred Hhhhhhhccc---cccchhHHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHhcC-chhHHHHHH
Q 010848 57 LYIKDDFEAV---NQSSFLQETIVSMALVGAIVGAASGGWINDAY-GRKKATLLADVVFTAGAIIMAAAP-DPYVLILGR 131 (499)
Q Consensus 57 ~~i~~~~~~~---~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~-Grr~~l~~~~~l~~~~~~~~~~a~-s~~~li~~R 131 (499)
+++.++++.. +.+....+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.+++++++ +++.+++.|
T Consensus 37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (524)
T 2xut_A 37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL 116 (524)
T ss_dssp HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4466666510 13445568899999999999999999999999 999999999999999999999999 999999999
Q ss_pred HHHHhhhhhhhhhHHHHHhhcCCcCcccchhhH---hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH
Q 010848 132 LLVGLGVGIASVTAPVYIAEASPSEVRGGLVST---NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM 208 (499)
Q Consensus 132 ~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~---~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~ 208 (499)
+++|++.|...+...++++|++|+++|++..+. ......+|..+++.++..+.+. .+||+.|++.++..++..+..
T Consensus 117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-FGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876655 7788889999999887766543 369999999887766655554
Q ss_pred Hh
Q 010848 209 LF 210 (499)
Q Consensus 209 ~~ 210 (499)
++
T Consensus 196 ~~ 197 (524)
T 2xut_A 196 WL 197 (524)
T ss_dssp HS
T ss_pred HH
Confidence 43
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.2e-25 Score=225.66 Aligned_cols=363 Identities=12% Similarity=0.069 Sum_probs=204.5
Q ss_pred hhhhhccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHH---HHhcCch-hHHHHHHHHH
Q 010848 59 IKDDFEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAII---MAAAPDP-YVLILGRLLV 134 (499)
Q Consensus 59 i~~~~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~---~~~a~s~-~~li~~R~l~ 134 (499)
++++++. +....+++.+.+.+++.++++++|+++||+||||+++++..++.+++.. +.+++.. ..++..|++.
T Consensus 34 l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T 2cfq_A 34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVG 110 (417)
T ss_dssp HHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGG
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555654 3344688999999999999999999999999999999988877653221 1222211 1234456666
Q ss_pred HhhhhhhhhhHHHHHhhcCCc--CcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHhcc
Q 010848 135 GLGVGIASVTAPVYIAEASPS--EVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLFMP 212 (499)
Q Consensus 135 Gig~g~~~~~~~~~i~e~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~lp 212 (499)
|++.|...+.....+.++.++ ++|+...+.......+|..+++.++..+.+ .+||+.|++.+++.++..+..++.|
T Consensus 111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~--~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 111 GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT--INNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH--HCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHcC
Confidence 665555444444444444433 345655555544455666666666555443 2599999998876655555544444
Q ss_pred -CChhHHhhcCCHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHhhhcccchhhhhcchhhHHHHHHHHHHHHHHhccCc
Q 010848 213 -ESPRWLFMKSDKEKAILVLSKIYDIARLEDEIDHLSAAAEEELRKKKTVRYLDVFKSKEIRLAFLAGAGLQAFQQFTGI 291 (499)
Q Consensus 213 -esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (499)
|+|+. .++.++++ ++.++++..+.++++++|+.+...+....... ..
T Consensus 189 ~~~~~~-~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 236 (417)
T 2cfq_A 189 TDAPSS-ATVANAVG--------------------------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSC-----TY 236 (417)
T ss_dssp CCCSCS-SCSSSSSS--------------------------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH-----HH
T ss_pred cccccc-cccccccc--------------------------cccccccHHHHHHHhcCCchhhHHHHHHHHHH-----HH
Confidence 44321 00000000 00000001123456677765543332211111 11
Q ss_pred ceehhchHHHHHHc-CC---CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 292 NTVMYYSPTIVQMA-GF---QSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 292 ~~~~~~~p~~~~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
.....+.|.+++.. +. +....+.... .......++.++.++++||+|||+.+..+.....+....+.. ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~----~~- 310 (417)
T 2cfq_A 237 DVFDQQFANFFTSFFATGEQGTRVFGYVTT-MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF----AT- 310 (417)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT----CC-
T ss_pred HHHHHHHHHHHHHHHhccCCChhHHHHHHH-HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----hc-
Confidence 11112345555432 21 1122233322 333346778899999999999999876655444433222210 10
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCchhhH
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMS-ATVNWISNLIVAQTFLTVAELVGTGATFL 446 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~f~ 446 (499)
. . +.......+.. .......+..+.+.+|.+|++.|+++.+.. +..+.+++.+++...+.+.+..++...|.
T Consensus 311 ---~-~--~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~ 383 (417)
T 2cfq_A 311 ---S-A--LEVVILKTLHM-FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp ---S-H--HHHHHHTTHHH-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHH
T ss_pred ---c-H--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHH
Confidence 1 1 11111111111 111111223467889999999999998885 67778888888888888777777777788
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCCH
Q 010848 447 ILAGIAVLAVVFVILFVPETQGLTF 471 (499)
Q Consensus 447 ~~~~~~~~~~~~~~~~~pet~~~~l 471 (499)
+.+++++++.+..+++.||+++.++
T Consensus 384 ~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 384 VLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHHHHHHhhhcCCCchHH
Confidence 8888888887776777787765543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.15 E-value=1.5e-10 Score=115.54 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHHhhc
Q 010848 73 QETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYIAEA 152 (499)
Q Consensus 73 ~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i~e~ 152 (499)
.++..+...++..++.++.|++.||+|||+++..+..+.+++.++.++.++.+.+++..++.|++.+...+....+++|.
T Consensus 261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788889999999999999999999998888888777777888888888888899998887777788999999
Q ss_pred CCcCcccchhhH-hHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHH-HhccCChh
Q 010848 153 SPSEVRGGLVST-NVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLM-LFMPESPR 216 (499)
Q Consensus 153 ~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~-~~lpesp~ 216 (499)
+|++.||...+. +.....+|..+++.+++.+.+. .+++..|.+.++..++..++. ...||.++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999987776 3556667888888777655442 258888888777776665554 34566554
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.13 E-value=7e-10 Score=111.47 Aligned_cols=155 Identities=15% Similarity=0.116 Sum_probs=122.1
Q ss_pred chhhHHhhhhh-hccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHhcC--chh
Q 010848 52 ISGALLYIKDD-FEAVNQSSFLQETIVSMALVGAIVGAASGGWINDAY--GRKKATLLADVVFT-AGAIIMAAAP--DPY 125 (499)
Q Consensus 52 i~~~~~~i~~~-~~~~~~~~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~--Grr~~l~~~~~l~~-~~~~~~~~a~--s~~ 125 (499)
+....|...++ ++ .+....++..+...++..++.++.|++.||+ |||+.+.++..+.. ++.++..+.+ +.+
T Consensus 271 ~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T 1pw4_A 271 ILDWSPTYLKEVKH---FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPT 347 (451)
T ss_dssp HHHHHHHHBTTBSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHH
T ss_pred HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHH
Confidence 34444444333 43 3344457788899999999999999999999 99999888887777 5555555553 677
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHhhcCCcCcccchhhHhHHHHHH-HHHHHHHhhhhccCCCCchHHHHHhhhHHHHHH
Q 010848 126 VLILGRLLVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITS-GQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQ 204 (499)
Q Consensus 126 ~li~~R~l~Gig~g~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~ 204 (499)
.+.+.-++.|++.+...+....++.|.+|+++||...+.......+ |..+++.+.+.+.+.. +|+..|++.++..++.
T Consensus 348 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~ 426 (451)
T 1pw4_A 348 VDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILA 426 (451)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999999999999999988888 9999998877665543 5999999888777766
Q ss_pred HHHHHh
Q 010848 205 FVLMLF 210 (499)
Q Consensus 205 ~~~~~~ 210 (499)
.++.++
T Consensus 427 ~~~~~~ 432 (451)
T 1pw4_A 427 VILLIV 432 (451)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.02 E-value=2.2e-09 Score=107.41 Aligned_cols=134 Identities=16% Similarity=0.051 Sum_probs=105.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhhhhhhHHHHH
Q 010848 70 SFLQETIVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAAPDPYVLILGRLLVGLGVGIASVTAPVYI 149 (499)
Q Consensus 70 ~~~~~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a~s~~~li~~R~l~Gig~g~~~~~~~~~i 149 (499)
....++..+...++..++.++.|+++||+|||+.+.++.++..++.++..+.++...++.. ++.|++.+...+....+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 372 (438)
T 3o7q_A 294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLG 372 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3345678888899999999999999999999999999999999999888888887766555 899999999999999999
Q ss_pred hhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHH
Q 010848 150 AEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFV 206 (499)
Q Consensus 150 ~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~ 206 (499)
.|..|++ |+...+... ...+|..+++.+.+.+.+..++++..|++.++..++.++
T Consensus 373 ~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 373 IKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred Hhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999977 776666655 445777777777666554333488888876554444333
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.94 E-value=8.5e-10 Score=108.14 Aligned_cols=161 Identities=12% Similarity=0.081 Sum_probs=112.0
Q ss_pred hchHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhhHHHHHHHHHHHHHHhhCCCCCCCchhh
Q 010848 296 YYSPTIVQMAGFQSNQLALLLSLAVAGTNAVGTIVGIYLIDHFGRKKLALSSLAGVIISLVLLSWAFISGSSASSSGVYG 375 (499)
Q Consensus 296 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 375 (499)
...|.+.++.|.+..+.+...+... ....++.++.|++.||+|||+.+..+.....++......... .
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~----------~- 88 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYL-LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS----------L- 88 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHH-HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH----------H-
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc----------H-
Confidence 3456677788888877776665544 457899999999999999999988777766666555543211 1
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q 010848 376 WIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGMSATVNWISNLIVAQTFLTVAELVGTGATFLILAGIAVLA 455 (499)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 455 (499)
+. +....+..........+...++..|.+|++.|+++.+.......++..+++.....+.+..+|+..|.+.+.+.++.
T Consensus 89 ~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 89 TV-LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 11 11111122222222345666788999999999999999999988888888777776666667777888877777776
Q ss_pred HHHHHHhcccCCCC
Q 010848 456 VVFVILFVPETQGL 469 (499)
Q Consensus 456 ~~~~~~~~pet~~~ 469 (499)
.+...++.||++++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 168 TFSMARWMPETRPV 181 (375)
T ss_dssp HCCCCCSSCCCSTT
T ss_pred HHHHHHHCcccCCC
Confidence 66556677887554
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.93 E-value=5.8e-09 Score=106.14 Aligned_cols=135 Identities=13% Similarity=0.136 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhchhHHHH-----HHHHHHHHHHHHHHhc---------CchhHHHHHHHHHHhhhh
Q 010848 74 ETIVSMALVGAIVGAASGGWINDAYGRKKATL-----LADVVFTAGAIIMAAA---------PDPYVLILGRLLVGLGVG 139 (499)
Q Consensus 74 ~~~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~-----~~~~l~~~~~~~~~~a---------~s~~~li~~R~l~Gig~g 139 (499)
++..+...++..++.++.|++.||+|||+... .+..+.+++.++.+.. .+...+++.-++.|++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 401 (491)
T 4aps_A 322 SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM 401 (491)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 44567778888899999999999999987654 6666666666555543 267778888899999999
Q ss_pred hhhhhHHHHHhhcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCCCCchHHHHHhhhHHHHHHHHHHHh
Q 010848 140 IASVTAPVYIAEASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEVPGTWRWMLGVSAVPAIIQFVLMLF 210 (499)
Q Consensus 140 ~~~~~~~~~i~e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~Wr~~f~~~~~~~~l~~~~~~~ 210 (499)
...+....++.|.+|+++||...+.......+|..+++.+...+.+. ++++.|++.+...++..++.++
T Consensus 402 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 402 LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887666543 3566677766666555544433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.88 E-value=1.8e-08 Score=102.50 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhc---C-chhHHHHHHHHH-HhhhhhhhhhHHHHHh
Q 010848 76 IVSMALVGAIVGAASGGWINDAYGRKKATLLADVVFTAGAIIMAAA---P-DPYVLILGRLLV-GLGVGIASVTAPVYIA 150 (499)
Q Consensus 76 ~~s~~~lg~~ig~~~~g~l~Dr~Grr~~l~~~~~l~~~~~~~~~~a---~-s~~~li~~R~l~-Gig~g~~~~~~~~~i~ 150 (499)
......+...++.++.+++.||+|||+.++.+.....++.+..+.. . +....++.-++. +.......++...+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (491)
T 4gc0_A 317 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLS 396 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455667778899999999999999999998888877766554322 1 112222222222 2222234467788999
Q ss_pred hcCCcCcccchhhHhHHHHHHHHHHHHHhhhhccCC-----CCchHHHHHhhhHHHHHHHHH-HHhccCCh
Q 010848 151 EASPSEVRGGLVSTNVLMITSGQFLSYLVNLAFTEV-----PGTWRWMLGVSAVPAIIQFVL-MLFMPESP 215 (499)
Q Consensus 151 e~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-----~~~Wr~~f~~~~~~~~l~~~~-~~~lpesp 215 (499)
|.+|.+.|+...+.......+|..+++.....+... ..++.+.|++.+..+++..++ ++++||+.
T Consensus 397 E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 397 EIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999998887776666666655432222110 013455677777666665554 46789984
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.86 E-value=1.2e-08 Score=104.79 Aligned_cols=158 Identities=13% Similarity=0.076 Sum_probs=103.1
Q ss_pred hchHHHH-HHcC------CCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHHHHHhhHHHHHHHHHHHHHHhhCCC
Q 010848 296 YYSPTIV-QMAG------FQSNQLALLLSLAVAGTNAVGTIVGIYLIDHF-GRKKLALSSLAGVIISLVLLSWAFISGSS 367 (499)
Q Consensus 296 ~~~p~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~ 367 (499)
.+.|.++ ++.| .+..+.+...+... .+..++.+++|+++||+ |||+.+..+.....++.++.... ..
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---~~- 107 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFV-IGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---EH- 107 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHH-HHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT---SS-
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh---cc-
Confidence 3445554 4567 78777776665544 45788999999999999 99999877766665555444321 10
Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccccccccccCcchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCchh
Q 010848 368 ASSSGVYGWIAVIGLALYIAFFAPGMGPVPWTLNSEVYPEQYRGICGGM---SATVNWISNLIVAQTFLTVAELVGTGAT 444 (499)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 444 (499)
. . +..... .+..........+...++..|.+|++.|+++.+. ......++..+++.+...+.+..+|+..
T Consensus 108 ---~--~-~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~ 180 (524)
T 2xut_A 108 ---S--V-QGFYTG-LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVA 180 (524)
T ss_dssp ---C--H-HHHHHH-HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHH
T ss_pred ---c--H-HHHHHH-HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 0 1 111111 1222223333456667889999999999876666 7777778888888777777777788888
Q ss_pred hHHHHHHHHHHHHHHHHhccc
Q 010848 445 FLILAGIAVLAVVFVILFVPE 465 (499)
Q Consensus 445 f~~~~~~~~~~~~~~~~~~pe 465 (499)
|++.+++.++..+..++..|+
T Consensus 181 f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 181 FGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 888777766665544333343
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=51.85 E-value=7 Score=19.89 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=11.4
Q ss_pred hhhhhhhhhchhHH
Q 010848 90 SGGWINDAYGRKKA 103 (499)
Q Consensus 90 ~~g~l~Dr~Grr~~ 103 (499)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46888999999964
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=23.48 E-value=1.2e+02 Score=25.79 Aligned_cols=25 Identities=4% Similarity=-0.136 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchh
Q 010848 77 VSMALVGAIVGAASGGWINDAYGRK 101 (499)
Q Consensus 77 ~s~~~lg~~ig~~~~g~l~Dr~Grr 101 (499)
+..|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4578889999999999999997654
Done!