Query 010849
Match_columns 499
No_of_seqs 304 out of 1641
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 15:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jtn_A LIM domain-binding prot 99.9 1.4E-23 4.6E-28 197.4 11.4 125 132-268 57-181 (182)
2 2xqn_T Testin, TESS; metal-bin 99.9 1.1E-23 3.9E-28 186.0 9.8 121 134-267 2-124 (126)
3 2xjy_A Rhombotin-2; oncoprotei 99.9 2.9E-23 1E-27 184.4 8.9 122 135-268 2-127 (131)
4 2rgt_A Fusion of LIM/homeobox 99.9 2.6E-23 8.8E-28 193.3 8.7 125 134-270 5-129 (169)
5 1rut_X Flinc4, fusion protein 99.9 1.6E-22 5.3E-27 191.2 6.8 127 133-271 3-133 (188)
6 1b8t_A Protein (CRP1); LIM dom 99.8 5.4E-21 1.8E-25 181.1 8.6 123 134-270 6-176 (192)
7 2cup_A Skeletal muscle LIM-pro 99.8 4.2E-20 1.4E-24 156.9 8.7 98 133-241 3-101 (101)
8 1m3v_A FLIN4, fusion of the LI 99.7 1.4E-18 4.9E-23 153.2 4.9 109 133-269 3-115 (122)
9 2ehe_A Four and A half LIM dom 99.7 6.2E-17 2.1E-21 132.5 6.6 79 122-200 2-81 (82)
10 1x3h_A Leupaxin; paxillin fami 99.7 1.4E-16 4.7E-21 129.7 7.6 78 122-200 2-79 (80)
11 2cuq_A Four and A half LIM dom 99.7 1.6E-16 5.4E-21 129.4 7.5 78 122-200 2-79 (80)
12 1j2o_A FLIN2, fusion of rhombo 99.6 2.4E-16 8.4E-21 137.3 8.1 103 135-269 3-107 (114)
13 2dlo_A Thyroid receptor-intera 99.6 2.7E-16 9.1E-21 128.5 7.6 77 122-200 3-80 (81)
14 1x63_A Skeletal muscle LIM-pro 99.6 8.2E-16 2.8E-20 125.7 7.9 77 123-199 3-80 (82)
15 1b8t_A Protein (CRP1); LIM dom 99.6 3.8E-17 1.3E-21 154.6 -2.1 112 96-207 25-187 (192)
16 1iml_A CRIP, cysteine rich int 99.6 2.1E-15 7.3E-20 121.7 6.2 71 136-206 1-72 (76)
17 1x6a_A LIMK-2, LIM domain kina 99.6 3.3E-15 1.1E-19 121.9 6.6 76 123-199 3-80 (81)
18 1a7i_A QCRP2 (LIM1); LIM domai 99.5 2.2E-15 7.5E-20 123.1 4.7 73 133-205 5-77 (81)
19 2egq_A FHL1 protein; LIM domai 99.5 5.7E-15 2E-19 119.2 7.0 72 122-193 2-77 (77)
20 2dj7_A Actin-binding LIM prote 99.5 1.4E-14 4.7E-19 118.8 7.1 68 132-200 12-79 (80)
21 2dar_A PDZ and LIM domain prot 99.5 1.3E-14 4.4E-19 121.0 7.1 70 130-200 20-89 (90)
22 1x68_A FHL5 protein; four-and- 99.5 8.5E-15 2.9E-19 118.3 5.5 70 133-202 3-75 (76)
23 2cu8_A Cysteine-rich protein 2 99.5 1.6E-14 5.5E-19 116.5 7.0 70 131-200 5-75 (76)
24 2cur_A Skeletal muscle LIM-pro 99.5 1.5E-14 5.1E-19 114.5 6.2 67 133-200 3-69 (69)
25 2d8z_A Four and A half LIM dom 99.5 1.6E-14 5.3E-19 114.5 6.2 67 133-200 3-69 (70)
26 1x4k_A Skeletal muscle LIM-pro 99.5 2.3E-14 7.9E-19 114.0 6.6 68 133-200 3-71 (72)
27 2d8y_A Eplin protein; LIM doma 99.5 3.5E-14 1.2E-18 118.6 7.9 76 130-205 10-85 (91)
28 1wyh_A SLIM 2, skeletal muscle 99.5 2E-14 6.9E-19 114.4 6.1 68 133-200 3-71 (72)
29 1x4l_A Skeletal muscle LIM-pro 99.5 4.7E-14 1.6E-18 112.5 6.3 66 133-198 3-71 (72)
30 1nyp_A Pinch protein; LIM doma 99.5 2.8E-14 9.5E-19 111.9 4.8 64 133-197 3-66 (66)
31 1g47_A Pinch protein; LIM doma 99.5 5E-14 1.7E-18 113.5 5.8 67 133-199 9-76 (77)
32 2xjy_A Rhombotin-2; oncoprotei 99.4 2.5E-15 8.7E-20 133.1 -4.6 102 96-197 20-130 (131)
33 1rut_X Flinc4, fusion protein 99.4 4.6E-15 1.6E-19 139.9 -3.4 108 96-203 23-139 (188)
34 2d8x_A Protein pinch; LIM doma 99.4 1.7E-13 5.9E-18 108.6 6.2 66 133-199 3-68 (70)
35 1x64_A Alpha-actinin-2 associa 99.4 2.2E-13 7.5E-18 113.3 6.3 66 133-199 23-88 (89)
36 1x62_A C-terminal LIM domain p 99.4 1.2E-13 4.1E-18 112.4 4.0 66 133-199 13-78 (79)
37 2xqn_T Testin, TESS; metal-bin 99.4 1.3E-14 4.6E-19 127.7 -2.1 99 96-194 21-125 (126)
38 1v6g_A Actin binding LIM prote 99.4 3.3E-13 1.1E-17 110.1 5.9 72 123-195 3-75 (81)
39 2cor_A Pinch protein; LIM doma 99.4 3.1E-13 1E-17 110.3 5.6 65 133-199 13-77 (79)
40 1x61_A Thyroid receptor intera 99.4 4.1E-13 1.4E-17 106.9 6.0 68 133-201 3-71 (72)
41 1wig_A KIAA1808 protein; LIM d 99.4 3.8E-13 1.3E-17 108.1 5.7 64 133-197 3-67 (73)
42 2l3k_A Rhombotin-2, linker, LI 99.3 7.9E-13 2.7E-17 116.5 5.8 78 131-208 2-83 (123)
43 3f6q_B LIM and senescent cell 99.3 9.9E-13 3.4E-17 104.0 5.8 65 131-195 7-72 (72)
44 2rgt_A Fusion of LIM/homeobox 99.3 8.9E-14 3E-18 128.9 -1.0 104 96-199 24-132 (169)
45 2co8_A NEDD9 interacting prote 99.3 1.3E-12 4.6E-17 107.2 5.7 67 132-198 12-80 (82)
46 2egq_A FHL1 protein; LIM domai 99.3 1E-12 3.4E-17 105.9 4.3 73 181-266 1-76 (77)
47 1x6a_A LIMK-2, LIM domain kina 99.3 1.4E-12 5E-17 106.1 4.7 76 181-269 1-76 (81)
48 2jtn_A LIM domain-binding prot 99.3 1.6E-13 5.6E-18 128.6 -1.2 98 96-193 78-180 (182)
49 2l4z_A DNA endonuclease RBBP8, 99.3 1.9E-12 6.4E-17 114.6 5.5 64 132-195 58-123 (123)
50 2ehe_A Four and A half LIM dom 99.3 1.9E-12 6.6E-17 105.6 4.4 76 181-269 1-76 (82)
51 2iyb_E Testin, TESS, TES; LIM 99.3 2.5E-12 8.6E-17 100.8 4.6 59 135-193 2-64 (65)
52 2cuq_A Four and A half LIM dom 99.3 3.1E-12 1.1E-16 103.8 4.6 74 181-269 1-74 (80)
53 1x3h_A Leupaxin; paxillin fami 99.2 7.3E-12 2.5E-16 101.6 4.6 74 181-269 1-74 (80)
54 1x63_A Skeletal muscle LIM-pro 99.2 7.4E-12 2.5E-16 102.0 4.7 76 181-269 1-76 (82)
55 1v6g_A Actin binding LIM prote 99.2 1.5E-11 5E-16 100.2 5.6 76 181-270 1-76 (81)
56 2dlo_A Thyroid receptor-intera 99.2 2E-11 6.9E-16 99.4 4.8 73 181-269 2-75 (81)
57 2cup_A Skeletal muscle LIM-pro 98.9 9.5E-11 3.3E-15 99.0 -2.6 74 96-169 24-101 (101)
58 1wig_A KIAA1808 protein; LIM d 98.8 4.8E-09 1.7E-13 84.0 4.7 63 193-269 3-65 (73)
59 2iyb_E Testin, TESS, TES; LIM 98.6 1.4E-08 4.9E-13 79.2 3.5 61 194-267 1-64 (65)
60 1x4k_A Skeletal muscle LIM-pro 98.6 2.1E-08 7.3E-13 79.2 4.4 65 192-269 2-66 (72)
61 1x4l_A Skeletal muscle LIM-pro 98.6 2.4E-08 8.1E-13 79.2 4.6 64 193-268 3-67 (72)
62 2dar_A PDZ and LIM domain prot 98.6 2.5E-08 8.6E-13 82.7 4.9 70 185-269 15-84 (90)
63 1x68_A FHL5 protein; four-and- 98.6 2.2E-08 7.5E-13 80.4 4.1 65 192-269 2-68 (76)
64 1x61_A Thyroid receptor intera 98.6 3.1E-08 1.1E-12 78.4 4.7 64 193-269 3-66 (72)
65 2d8z_A Four and A half LIM dom 98.6 2.8E-08 9.5E-13 78.2 4.1 62 193-269 3-64 (70)
66 2cur_A Skeletal muscle LIM-pro 98.6 3.3E-08 1.1E-12 77.7 4.4 62 193-269 3-64 (69)
67 1nyp_A Pinch protein; LIM doma 98.6 1.9E-08 6.5E-13 78.4 2.7 63 192-269 2-64 (66)
68 2d8x_A Protein pinch; LIM doma 98.6 4.7E-08 1.6E-12 77.0 5.0 61 194-269 4-64 (70)
69 1wyh_A SLIM 2, skeletal muscle 98.6 3.7E-08 1.3E-12 77.8 4.2 65 192-269 2-66 (72)
70 3f6q_B LIM and senescent cell 98.6 3.2E-08 1.1E-12 77.8 3.5 64 191-267 7-70 (72)
71 2l3k_A Rhombotin-2, linker, LI 98.5 5.4E-08 1.9E-12 85.4 4.6 67 190-268 1-69 (123)
72 2cor_A Pinch protein; LIM doma 98.5 7.6E-08 2.6E-12 78.1 4.3 61 193-269 13-73 (79)
73 2cu8_A Cysteine-rich protein 2 98.5 1.2E-07 4E-12 76.0 4.5 63 193-269 7-70 (76)
74 2l4z_A DNA endonuclease RBBP8, 98.5 9.2E-08 3.1E-12 84.4 4.2 62 193-267 59-121 (123)
75 1g47_A Pinch protein; LIM doma 98.4 9.4E-08 3.2E-12 76.5 3.6 64 193-269 9-72 (77)
76 2dj7_A Actin-binding LIM prote 98.4 3.1E-07 1.1E-11 74.8 4.9 60 195-269 15-74 (80)
77 2co8_A NEDD9 interacting prote 98.4 3E-07 1E-11 75.1 4.7 61 195-269 15-77 (82)
78 1x62_A C-terminal LIM domain p 98.4 1.2E-07 4E-12 76.8 2.2 61 194-269 14-74 (79)
79 1a7i_A QCRP2 (LIM1); LIM domai 98.3 2.3E-07 8E-12 75.1 3.7 62 194-269 6-67 (81)
80 1x64_A Alpha-actinin-2 associa 98.3 3E-07 1E-11 76.0 4.2 61 194-269 24-84 (89)
81 2d8y_A Eplin protein; LIM doma 98.3 3.1E-07 1.1E-11 76.2 3.5 64 193-270 13-76 (91)
82 1iml_A CRIP, cysteine rich int 98.3 4.5E-07 1.5E-11 72.6 3.8 60 196-269 1-61 (76)
83 1m3v_A FLIN4, fusion of the LI 98.2 2.8E-07 9.7E-12 80.7 2.3 66 193-270 3-68 (122)
84 1j2o_A FLIN2, fusion of rhombo 98.2 6.1E-07 2.1E-11 77.6 3.9 65 195-271 3-67 (114)
85 1zfo_A LAsp-1; LIM domain, zin 96.8 0.00031 1.1E-08 47.2 0.9 29 135-163 3-31 (31)
86 1z5h_A Tricorn protease intera 75.6 4.6 0.00016 45.3 7.4 41 378-418 259-301 (780)
87 3ebh_A PFA-M1, M1 family amino 70.7 6.9 0.00024 44.8 7.4 42 378-419 295-338 (889)
88 4fke_A Aminopeptidase N; zinc 68.7 11 0.00037 43.1 8.5 36 378-418 316-358 (909)
89 2xq0_A LTA-4 hydrolase, leukot 67.8 2.5 8.7E-05 46.2 2.9 40 379-418 296-337 (632)
90 4ap4_A E3 ubiquitin ligase RNF 66.4 4.5 0.00015 34.0 3.7 94 163-271 8-113 (133)
91 2hf1_A Tetraacyldisaccharide-1 66.3 0.92 3.1E-05 35.7 -0.7 41 235-303 9-49 (68)
92 2jny_A Uncharacterized BCR; st 65.5 0.6 2.1E-05 36.7 -1.9 40 235-302 11-50 (67)
93 2d3g_P Ubiquitin interacting m 65.2 2.3 7.9E-05 27.1 1.1 22 76-97 2-23 (26)
94 2jr6_A UPF0434 protein NMA0874 64.2 1.2 4.1E-05 35.1 -0.4 40 235-302 9-48 (68)
95 3u9w_A Leukotriene A-4 hydrola 63.8 3 0.0001 45.3 2.5 40 379-418 288-329 (608)
96 3cia_A Cold-active aminopeptid 61.9 3 0.0001 45.3 2.1 40 379-418 295-336 (605)
97 1zfo_A LAsp-1; LIM domain, zin 61.5 3.6 0.00012 27.0 1.7 27 164-190 5-31 (31)
98 3cqb_A Probable protease HTPX 60.9 4.4 0.00015 34.0 2.5 19 373-391 78-96 (107)
99 1t1h_A Gspef-atpub14, armadill 59.9 8.4 0.00029 29.6 3.9 47 160-207 6-55 (78)
100 3b34_A Aminopeptidase N; prote 59.6 8.3 0.00028 44.1 5.2 42 378-419 312-355 (891)
101 4fgm_A Aminopeptidase N family 58.7 3.7 0.00013 44.8 2.1 43 377-419 266-321 (597)
102 2xdt_A Endoplasmic reticulum a 58.3 5.1 0.00017 45.7 3.2 43 377-419 301-345 (897)
103 2ysl_A Tripartite motif-contai 57.9 9.6 0.00033 28.7 3.8 45 163-208 21-70 (73)
104 2ecy_A TNF receptor-associated 57.6 6.3 0.00022 29.4 2.7 45 163-208 16-63 (66)
105 2djb_A Polycomb group ring fin 57.3 7.9 0.00027 29.4 3.3 45 163-208 16-63 (72)
106 1jm7_B BARD1, BRCA1-associated 56.1 8.9 0.00031 32.2 3.7 43 163-206 23-66 (117)
107 3se6_A Endoplasmic reticulum a 56.1 5.1 0.00017 46.2 2.8 42 377-418 363-406 (967)
108 2gtq_A Aminopeptidase N; alani 55.0 7 0.00024 44.5 3.6 42 378-419 287-330 (867)
109 2w15_A Zinc metalloproteinase 51.6 9.8 0.00033 35.1 3.5 25 366-390 124-148 (202)
110 2js4_A UPF0434 protein BB2007; 51.3 5.8 0.0002 31.3 1.5 40 235-302 9-48 (70)
111 2ecv_A Tripartite motif-contai 51.3 11 0.00038 29.0 3.3 45 163-208 20-72 (85)
112 4ayc_A E3 ubiquitin-protein li 50.1 12 0.00042 32.3 3.6 28 180-207 70-99 (138)
113 1atl_A Atrolysin C; metalloend 49.9 11 0.00037 34.9 3.5 25 366-390 124-148 (202)
114 1bor_A Transcription factor PM 49.5 13 0.00046 26.9 3.3 44 163-208 7-50 (56)
115 4etm_A LMPTP, low molecular we 49.4 9.1 0.00031 35.0 2.8 32 464-496 141-172 (173)
116 2ecw_A Tripartite motif-contai 48.7 11 0.00039 28.9 2.9 45 163-208 20-72 (85)
117 1qua_A Acutolysin-C, hemorrhag 48.6 12 0.0004 34.5 3.5 25 366-390 123-147 (197)
118 2ecm_A Ring finger and CHY zin 48.4 16 0.00053 25.8 3.4 44 164-207 7-55 (55)
119 3dte_A IRRE protein; radiotole 48.2 9.8 0.00034 38.0 3.0 94 366-498 84-189 (301)
120 2csy_A Zinc finger protein 183 47.9 13 0.00044 28.8 3.1 43 163-206 16-60 (81)
121 2pk7_A Uncharacterized protein 47.4 6.2 0.00021 31.0 1.1 40 235-302 9-48 (69)
122 1kuf_A Atrolysin E, metallopro 47.4 12 0.00043 34.5 3.5 25 366-390 126-150 (203)
123 4dd8_A Disintegrin and metallo 47.2 12 0.00042 34.7 3.4 25 366-390 121-145 (208)
124 1bud_A Protein (acutolysin A); 47.2 13 0.00043 34.2 3.5 25 366-390 121-145 (197)
125 3l11_A E3 ubiquitin-protein li 47.0 11 0.00038 31.3 2.8 30 163-193 16-45 (115)
126 2d8t_A Dactylidin, ring finger 46.9 15 0.00052 27.7 3.3 44 163-207 16-61 (71)
127 3vk6_A E3 ubiquitin-protein li 46.3 12 0.00043 31.5 2.9 44 164-207 3-49 (101)
128 1jm7_A BRCA1, breast cancer ty 46.3 13 0.00044 30.4 3.1 43 164-207 23-70 (112)
129 1yp1_A FII; FII hydrolase; 1.9 46.3 13 0.00046 34.3 3.5 25 366-390 123-147 (202)
130 3rof_A Low molecular weight pr 46.1 9.3 0.00032 34.4 2.3 32 464-496 124-155 (158)
131 2kre_A Ubiquitin conjugation f 45.8 18 0.0006 29.9 3.8 47 160-207 27-75 (100)
132 3c37_A Peptidase, M48 family; 45.8 6.6 0.00023 37.8 1.3 28 366-393 83-115 (253)
133 2kwj_A Zinc finger protein DPF 44.9 41 0.0014 28.4 6.1 85 149-266 22-108 (114)
134 2y43_A E3 ubiquitin-protein li 44.3 11 0.00039 30.4 2.3 44 163-207 23-69 (99)
135 1chc_A Equine herpes virus-1 r 44.3 17 0.0006 26.9 3.3 44 164-207 7-52 (68)
136 1wgm_A Ubiquitin conjugation f 43.7 19 0.00067 29.5 3.7 47 160-207 20-69 (98)
137 3dwb_A ECE-1, endothelin-conve 43.5 6.7 0.00023 43.2 1.1 15 377-391 500-514 (670)
138 2yur_A Retinoblastoma-binding 43.1 18 0.00061 27.6 3.2 44 163-207 16-64 (74)
139 2kr4_A Ubiquitin conjugation f 42.3 20 0.00068 28.5 3.5 47 160-207 12-60 (85)
140 2egp_A Tripartite motif-contai 42.2 12 0.00039 28.7 2.0 44 163-207 13-65 (79)
141 2jsd_A Matrix metalloproteinas 41.3 11 0.00037 33.4 1.9 16 377-393 107-122 (160)
142 2c2l_A CHIP, carboxy terminus 41.2 18 0.00062 34.2 3.6 47 160-207 206-255 (281)
143 2ecn_A Ring finger protein 141 40.3 12 0.00043 27.9 1.9 44 163-208 16-61 (70)
144 3fl2_A E3 ubiquitin-protein li 40.0 16 0.00056 30.7 2.8 28 180-207 69-99 (124)
145 1weo_A Cellulose synthase, cat 39.8 42 0.0014 27.7 5.0 54 131-205 12-68 (93)
146 2ysm_A Myeloid/lymphoid or mix 39.6 46 0.0016 27.7 5.5 96 136-267 8-105 (111)
147 4ic3_A E3 ubiquitin-protein li 39.5 27 0.00093 26.8 3.8 41 164-207 26-67 (74)
148 2ckl_A Polycomb group ring fin 39.4 17 0.00058 29.8 2.7 45 162-207 15-62 (108)
149 3zuk_A Endopeptidase, peptidas 39.1 8.6 0.00029 42.7 1.1 15 377-391 522-536 (699)
150 3nxq_A Angiotensin-converting 38.9 24 0.00081 38.8 4.5 34 380-414 357-398 (629)
151 2ct2_A Tripartite motif protei 38.9 19 0.00066 27.9 2.9 46 163-208 16-69 (88)
152 2dw0_A Catrocollastatin; apopt 38.5 19 0.00064 37.4 3.5 25 366-390 125-149 (419)
153 2ckl_B Ubiquitin ligase protei 38.5 15 0.0005 32.7 2.3 43 163-206 55-101 (165)
154 1r1h_A Neprilysin; enkephalina 38.5 8.4 0.00029 42.5 0.8 15 377-391 523-537 (696)
155 2ddf_A ADAM 17; hydrolase; HET 37.7 14 0.00047 35.4 2.2 20 371-390 173-194 (257)
156 2gvi_A Conserved hypothetical 37.6 9.6 0.00033 35.8 1.0 29 164-192 174-202 (204)
157 2ero_A VAP-1, vascular apoptos 37.0 19 0.00064 37.5 3.2 25 366-390 134-158 (427)
158 3nw0_A Non-structural maintena 36.1 11 0.00038 36.3 1.2 47 135-208 180-230 (238)
159 3b4r_A Putative zinc metallopr 35.4 17 0.00058 34.5 2.4 21 376-396 46-67 (224)
160 4ap4_A E3 ubiquitin ligase RNF 35.3 35 0.0012 28.3 4.1 70 136-208 49-126 (133)
161 2ea6_A Ring finger protein 4; 35.2 13 0.00046 27.3 1.3 29 178-206 37-67 (69)
162 1z6u_A NP95-like ring finger p 35.1 22 0.00075 31.4 2.9 30 179-208 94-126 (150)
163 1g25_A CDK-activating kinase a 35.1 21 0.00072 26.3 2.4 46 163-208 4-56 (65)
164 1e4u_A Transcriptional repress 34.6 30 0.001 27.2 3.3 46 163-208 12-63 (78)
165 2ovx_A Matrix metalloproteinas 34.5 15 0.0005 32.8 1.6 11 379-389 112-122 (159)
166 2i47_A ADAM 17; TACE-inhibitor 34.3 17 0.00057 35.5 2.2 20 371-390 179-200 (288)
167 2e3x_A Coagulation factor X-ac 34.3 25 0.00085 36.6 3.6 25 366-390 127-151 (427)
168 3ztg_A E3 ubiquitin-protein li 34.2 17 0.00059 28.7 1.9 43 162-205 13-60 (92)
169 3edh_A Bone morphogenetic prot 33.9 15 0.00051 34.4 1.6 14 378-391 87-100 (201)
170 4ger_A Gentlyase metalloprotea 33.1 20 0.00067 36.0 2.4 42 374-415 125-169 (304)
171 2xeu_A Ring finger protein 4; 32.8 17 0.00059 26.3 1.6 46 163-208 4-57 (64)
172 3lqb_A Hatching enzyme, LOC792 32.7 16 0.00055 34.2 1.6 13 378-390 93-105 (199)
173 2rjp_A Adamts-4; metalloprotea 32.6 22 0.00074 35.2 2.7 22 366-390 134-155 (316)
174 1q0v_A Hydrophilic protein; ha 32.4 13 0.00044 30.2 0.8 43 75-117 9-66 (81)
175 3lrq_A E3 ubiquitin-protein li 32.3 20 0.00067 29.2 2.0 44 163-207 23-70 (100)
176 2ecg_A Baculoviral IAP repeat- 32.1 31 0.0011 26.4 3.0 26 180-207 42-68 (75)
177 2kpi_A Uncharacterized protein 31.9 12 0.0004 28.1 0.5 39 234-302 10-50 (56)
178 2cs3_A Protein C14ORF4, MY039 31.5 17 0.00058 29.6 1.4 33 134-166 14-46 (93)
179 1r55_A ADAM 33; metalloproteas 31.5 28 0.00097 32.3 3.2 15 376-390 134-148 (214)
180 1cge_A Fibroblast collagenase; 31.4 18 0.0006 32.6 1.6 15 378-393 111-125 (168)
181 1rmd_A RAG1; V(D)J recombinati 31.2 31 0.0011 28.5 3.1 45 163-208 24-71 (116)
182 3hct_A TNF receptor-associated 31.2 27 0.00094 29.1 2.7 45 163-208 19-66 (118)
183 3dnz_A Thermolysin; hydrolase, 31.2 24 0.0008 35.6 2.7 41 374-414 132-175 (316)
184 2ep4_A Ring finger protein 24; 30.8 40 0.0014 25.3 3.4 27 181-207 36-64 (74)
185 2ect_A Ring finger protein 126 30.8 36 0.0012 25.8 3.2 28 181-208 36-65 (78)
186 2xs4_A Karilysin protease; hyd 30.6 19 0.00063 32.3 1.6 15 378-393 115-129 (167)
187 1hy7_A Stromelysin-1, MMP-3; m 30.5 20 0.0007 32.3 1.9 15 378-393 113-127 (173)
188 2ct0_A Non-SMC element 1 homol 30.4 20 0.00069 28.3 1.6 49 133-208 13-65 (74)
189 3knv_A TNF receptor-associated 29.7 14 0.00049 32.4 0.7 45 162-207 31-78 (141)
190 3ng2_A RNF4, snurf, ring finge 29.7 20 0.00067 26.7 1.4 31 178-208 32-64 (71)
191 2rjq_A Adamts-5; metalloprotea 29.6 26 0.00087 35.6 2.7 22 366-390 134-155 (378)
192 3hcs_A TNF receptor-associated 29.5 33 0.0011 30.4 3.1 46 162-208 18-66 (170)
193 1bqb_A Protein (aureolysin); h 29.5 26 0.0009 35.0 2.7 41 374-414 134-177 (301)
194 3b8z_A Protein adamts-5; alpha 28.9 26 0.00088 32.6 2.4 15 376-390 139-153 (217)
195 4aw6_A CAAX prenyl protease 1 28.2 28 0.00094 37.0 2.7 22 371-392 322-343 (482)
196 3jvi_A Protein tyrosine phosph 28.0 45 0.0015 29.8 3.7 32 464-496 126-159 (161)
197 2v4b_A Adamts-1; zymogen, prot 27.8 29 0.001 33.9 2.7 15 376-390 141-155 (300)
198 2ecj_A Tripartite motif-contai 27.7 42 0.0014 23.7 2.9 30 163-193 16-45 (58)
199 2f42_A STIP1 homology and U-bo 27.7 33 0.0011 31.6 2.9 47 160-207 104-153 (179)
200 3gor_A Putative metal-dependen 27.7 38 0.0013 28.6 3.1 32 375-406 121-157 (157)
201 1v9x_A Poly (ADP-ribose) polym 27.6 19 0.00065 30.9 1.1 19 131-149 16-34 (114)
202 1jjd_A Metallothionein, SMTA; 27.5 34 0.0011 25.7 2.3 29 164-192 9-38 (55)
203 3lq0_A Proastacin; metallopept 27.2 22 0.00076 34.1 1.6 15 379-393 121-135 (235)
204 1i76_A MMP-8;, neutrophil coll 27.2 25 0.00087 31.4 1.9 15 378-393 112-126 (163)
205 1iym_A EL5; ring-H2 finger, ub 26.9 54 0.0019 22.9 3.4 25 181-205 27-53 (55)
206 2gi4_A Possible phosphotyrosin 26.9 14 0.00048 33.0 0.1 31 464-495 123-153 (156)
207 1hv5_A Stromelysin 3; inhibiti 26.8 26 0.00089 31.3 1.9 12 378-389 113-124 (165)
208 3k7n_A K-like; SVMP, hydrolase 26.5 39 0.0013 34.8 3.4 15 376-390 137-151 (397)
209 3k7l_A Atragin; SVMP, metallop 26.1 39 0.0013 35.1 3.4 25 366-390 132-156 (422)
210 1u4g_A Elastase, pseudolysin; 25.9 31 0.0011 34.4 2.4 38 377-414 133-173 (301)
211 2kiz_A E3 ubiquitin-protein li 25.5 53 0.0018 24.2 3.2 27 181-207 35-63 (69)
212 2gvi_A Conserved hypothetical 23.7 20 0.00067 33.6 0.5 30 235-266 173-202 (204)
213 3odc_A Poly [ADP-ribose] polym 23.5 19 0.00066 30.7 0.3 19 131-149 15-33 (111)
214 2jne_A Hypothetical protein YF 23.1 14 0.00048 31.1 -0.6 10 136-145 33-42 (101)
215 2ysj_A Tripartite motif-contai 22.9 41 0.0014 24.4 2.1 31 163-194 21-51 (63)
216 3ayu_A 72 kDa type IV collagen 22.9 31 0.0011 31.0 1.6 11 379-389 115-125 (167)
217 2vqx_A Metalloproteinase; ther 22.9 41 0.0014 34.2 2.7 40 376-415 154-196 (341)
218 1slm_A Stromelysin-1; hydrolas 22.8 30 0.001 33.5 1.6 12 378-389 195-206 (255)
219 3g5c_A ADAM 22; alpha/beta fol 22.8 53 0.0018 35.1 3.7 16 375-390 131-146 (510)
220 1y93_A Macrophage metalloelast 22.5 35 0.0012 30.3 1.9 12 378-389 108-119 (159)
221 3nqx_A MCP-02, secreted metall 22.3 40 0.0014 33.8 2.4 39 376-414 133-174 (306)
222 1uw0_A DNA ligase III; DNA rep 21.3 22 0.00075 30.5 0.3 19 131-149 11-29 (117)
223 2dmj_A Poly (ADP-ribose) polym 21.0 31 0.0011 29.0 1.1 20 190-209 20-39 (106)
224 3od8_A Poly [ADP-ribose] polym 20.6 23 0.0008 30.5 0.3 19 131-149 34-52 (116)
225 2qr4_A Peptidase M3B, oligoend 20.1 54 0.0018 35.2 3.1 34 379-412 364-400 (587)
No 1
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.89 E-value=1.4e-23 Score=197.39 Aligned_cols=125 Identities=26% Similarity=0.496 Sum_probs=106.7
Q ss_pred CCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCCCcc
Q 010849 132 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAG 211 (499)
Q Consensus 132 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g 211 (499)
....++|.+|+++|....++.++|+.||++||+|..|+++|.+..| .+++++||+.||.++|+++|.+|+++|.+.. .
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~-~ 134 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCF-SRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-V 134 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCE-EETTEEECHHHHHHTTSCCCTTTCCCCCSSC-C
T ss_pred CCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCce-eECCEeeecCccccccccccccCCCccCCCc-e
Confidence 4457899999999986667899999999999999999999998665 7899999999999999999999999998753 2
Q ss_pred eEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010849 212 LIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 268 (499)
Q Consensus 212 ~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav 268 (499)
++.+.. + +||..||+|..|++.+..++.|+...||++||..||.++.
T Consensus 135 v~~a~~-----~-----~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~~~ 181 (182)
T 2jtn_A 135 VRRAQD-----F-----VYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAK 181 (182)
T ss_dssp CCEETT-----E-----ECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHHHT
T ss_pred EEecCC-----C-----CEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHHhh
Confidence 333432 2 2499999999999987767788888899999999998763
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=186.04 Aligned_cols=121 Identities=18% Similarity=0.372 Sum_probs=104.4
Q ss_pred CCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCCCcceE
Q 010849 134 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLI 213 (499)
Q Consensus 134 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I 213 (499)
+.++|++|+++|.+++++.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+|+++|.+.+ ..|
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~ 80 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV-QRV 80 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTS-CEE
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCc-eEE
Confidence 4689999999998788999999999999999999999999989999999999999999999999999999999743 356
Q ss_pred EeeccCccccccCCCCcC--CCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010849 214 EYRCHPFWAQKYCPSHEH--DHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 267 (499)
Q Consensus 214 ~~~~~pfWgq~YCp~H~H--~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sa 267 (499)
.+... . || +.||+|..|++++. +..|.+.||++||..++..+
T Consensus 81 ~a~~~-----~-----~H~~~~CF~C~~C~~~l~--~~~f~~~~~~~yC~~~~~~~ 124 (126)
T 2xqn_T 81 TYNNF-----S-----WHASTECFLCSCCSKCLI--GQKFMPVEGMVFCSVECKKR 124 (126)
T ss_dssp EETTE-----E-----EESSTTTSBCTTTCCBCT--TSEEEEETTEEESSHHHHHS
T ss_pred ECCCC-----E-----eeCCCCCcCcCCCCCccC--CCeeEeECCEEcchHHhhhh
Confidence 66543 2 38 99999999999654 55566788999999665543
No 3
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.88 E-value=2.9e-23 Score=184.43 Aligned_cols=122 Identities=20% Similarity=0.460 Sum_probs=103.7
Q ss_pred CCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCC--CceEeeCCcccchhhhhhhccc--cccccCCccCCCCc
Q 010849 135 YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE--HEFSLSGKDPYHKSCFKELTHP--KCEVCHQYIPTNGA 210 (499)
Q Consensus 135 ~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~~YC~~CY~~~f~p--kC~~C~~~I~~~~~ 210 (499)
.++|++|+++|.++.++.++|+.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|.+|+++|.+.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e- 80 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE- 80 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS-
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc-
Confidence 4789999999986657999999999999999999999973 6799999999999999999999 9999999998753
Q ss_pred ceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010849 211 GLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 268 (499)
Q Consensus 211 g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav 268 (499)
..+.+.. +. ||+.||+|..|++.++.+++|+ +.||++||..|+..+.
T Consensus 81 ~~~~a~~-----~~-----~H~~CF~C~~C~~~L~~g~~f~-~~~~~~~C~~c~~~~~ 127 (131)
T 2xjy_A 81 MTMRVKD-----KV-----YHLECFKCAACQKHFCVGDRYL-LINSDIVCEQDIYEWT 127 (131)
T ss_dssp EEEEETT-----EE-----EEGGGCBCTTTCCBCCTTCEEE-EETTEEEEGGGHHHHH
T ss_pred eeEeeCC-----ce-----ECccCcccCCCCCCCCCCCEEE-EECCEEEcHHHHHHHh
Confidence 3455543 23 3999999999999775566655 4578999999997764
No 4
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.88 E-value=2.6e-23 Score=193.29 Aligned_cols=125 Identities=26% Similarity=0.471 Sum_probs=106.4
Q ss_pred CCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCCCcceE
Q 010849 134 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLI 213 (499)
Q Consensus 134 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I 213 (499)
..++|.+|+++|.+..++.++|+.||++||+|..|+++|.+.. +.+++++||+.||.++|+++|.+|+++|.+.+ .++
T Consensus 5 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~-f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~-~v~ 82 (169)
T 2rgt_A 5 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERC-FSRGESVYCKDDFFKRFGTKCAACQLGIPPTQ-VVR 82 (169)
T ss_dssp --CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCC-EESSSCEECHHHHHHHHSCBCTTTCCBCCTTS-EEE
T ss_pred CCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCC-cccCCeeeecccccccccccccccccccCCCc-EEE
Confidence 4689999999998666789999999999999999999999866 57899999999999999999999999998753 233
Q ss_pred EeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccC
Q 010849 214 EYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMD 270 (499)
Q Consensus 214 ~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~d 270 (499)
.+.. +. ||..||+|..|++.+..|+.|+...||++||..||..+...
T Consensus 83 ~a~~-----~~-----~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~ 129 (169)
T 2rgt_A 83 RAQD-----FV-----YHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQG 129 (169)
T ss_dssp EETT-----EE-----EEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHC
T ss_pred EcCC-----ce-----EeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhc
Confidence 4432 22 49999999999998776778888889999999999888663
No 5
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.86 E-value=1.6e-22 Score=191.21 Aligned_cols=127 Identities=21% Similarity=0.422 Sum_probs=105.6
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCC--CceEeeCCcccchhhhhhhccc--cccccCCccCCC
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE--HEFSLSGKDPYHKSCFKELTHP--KCEVCHQYIPTN 208 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~~YC~~CY~~~f~p--kC~~C~~~I~~~ 208 (499)
...++|++|+++|.+..++.++++.||++||+|..|+++|.. ..|+.+++++||+.||.++|++ +|..|+++|.+.
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 356899999999985557999999999999999999999985 6899999999999999999999 799999999875
Q ss_pred CcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccCC
Q 010849 209 GAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDT 271 (499)
Q Consensus 209 ~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt 271 (499)
+ .+|.+... . ||+.||+|..|++.+..+..| .+.||++||..||..++...
T Consensus 83 e-~~i~a~~~-----~-----~H~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~c~~~~~~~~ 133 (188)
T 1rut_X 83 E-LVMRAQGN-----V-----YHLKCFTCSTCRNRLVPGDRF-HYINGSLFCEHDRPTALING 133 (188)
T ss_dssp S-EEEEETTE-----E-----ECGGGCBCTTTCCBCCTTCEE-EEETTEEEEGGGCCTTTC--
T ss_pred c-EEEEcCCC-----E-----EeCCCCeECCCCCCCCCCCeE-EEECCeEECHHHHHHHhccc
Confidence 3 34555432 2 399999999999976555554 46678999999998876643
No 6
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.83 E-value=5.4e-21 Score=181.10 Aligned_cols=123 Identities=25% Similarity=0.534 Sum_probs=103.5
Q ss_pred CCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccc----------------
Q 010849 134 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPK---------------- 197 (499)
Q Consensus 134 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pk---------------- 197 (499)
+.++|.+|+++|..++.+.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+
T Consensus 6 ~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~ 85 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKG 85 (192)
T ss_dssp CCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCC
T ss_pred CCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCC
Confidence 4679999999998788899999999999999999999999989999999999999999999887
Q ss_pred --------------------------------ccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccc
Q 010849 198 --------------------------------CEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLES 245 (499)
Q Consensus 198 --------------------------------C~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~ 245 (499)
|..|+++|.+.. .|.+... +||..||+|..|++.+.
T Consensus 86 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~C~~~I~~~~--~v~a~~~----------~~H~~CF~C~~C~~~L~ 153 (192)
T 1b8t_A 86 ESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPRCGQAVYAAE--KVIGAGK----------SWHKSCFRCAKCGKSLE 153 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTTTSCEECSSS--CEEETTE----------EECTTTCBCTTTCCBCC
T ss_pred cccccccccccccCCCCcCccccccccCCCCcCCCCCCEecCcE--EEecCCC----------ccchhcCCccccCCCCC
Confidence 668888887542 3444332 24999999999999654
Q ss_pred cCCceeEecCCccccchhhhhhccC
Q 010849 246 WNTRYYSLEDGRSLCLECMESAIMD 270 (499)
Q Consensus 246 ~g~~~~~l~dGr~~C~~C~~sav~d 270 (499)
++. |...||++||..||......
T Consensus 154 -~~~-~~~~~g~~yC~~cy~~~f~~ 176 (192)
T 1b8t_A 154 -STT-LADKDGEIYCKGCYAKNFGP 176 (192)
T ss_dssp -SSS-EEEETTEEEEHHHHHHHTCC
T ss_pred -CCc-ccccCCEEeCHHHHHHhcCC
Confidence 234 55788999999999887653
No 7
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.81 E-value=4.2e-20 Score=156.87 Aligned_cols=98 Identities=22% Similarity=0.448 Sum_probs=86.1
Q ss_pred CCCCCCCCCCCccCC-CceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCCCcc
Q 010849 133 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAG 211 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g 211 (499)
.+.++|.+|+++|.. +.++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..|+++|.+.+ .
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~-~ 81 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGD-Q 81 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSS-C
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCC-e
Confidence 467899999999964 78999999999999999999999999888999999999999999999999999999998532 2
Q ss_pred eEEeeccCccccccCCCCcCCCCcccCCCC
Q 010849 212 LIEYRCHPFWAQKYCPSHEHDHTSRCCSCE 241 (499)
Q Consensus 212 ~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~ 241 (499)
.|.++. +. ||+.||+|..|+
T Consensus 82 ~~~a~~-----~~-----~H~~CF~C~~C~ 101 (101)
T 2cup_A 82 NVEYKG-----TV-----WHKDCFSGPSSG 101 (101)
T ss_dssp EEESSS-----CE-----EETTTCCCTTCC
T ss_pred EEEeCC-----cc-----hHHhCCCCCCCC
Confidence 466553 33 399999999995
No 8
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=1.4e-18 Score=153.23 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=89.9
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCC--CCceEeeCCcccchhhhhhhccc--cccccCCccCCC
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPIT--EHEFSLSGKDPYHKSCFKELTHP--KCEVCHQYIPTN 208 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~--~~~F~~~dg~~YC~~CY~~~f~p--kC~~C~~~I~~~ 208 (499)
...++|++|+++|..+.++.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|++ +|.+|+++|.+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 35689999999998666799999999999999999999997 35799999999999999999999 999999999973
Q ss_pred CcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 209 GAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 209 ~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
. +.+. ++. ++.++.|.+.|+++||..|+....+
T Consensus 83 ~---~~~~------------------------g~~-~l~g~~f~~~~~~~yC~~~~~~~~~ 115 (122)
T 1m3v_A 83 D---VMVV------------------------GEP-TLMGGEFGDEDERLITRLENTQFDA 115 (122)
T ss_dssp E---SSSS------------------------SSS-SCCSCTTCCTTCCCCEECTTTTTTC
T ss_pred h---eEEc------------------------CCc-CCCCCccEecCCEeEccCcchhchh
Confidence 2 2221 111 2344456788899999999977755
No 9
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=132.51 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccC-CCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 122 FPPYDPSHYYPRSYKVCGGCNCDIG-YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 122 ~~pyC~~~y~~~~~~~C~~C~k~I~-~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
+.|||..||...+.++|.+|+++|. ++.++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|++
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~~~~C~~ 81 (82)
T 2ehe_A 2 SSGSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAFSSGPSS 81 (82)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCGGGSSCC
T ss_pred CceechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhcCCCCCC
Confidence 3799999999999999999999997 478899999999999999999999999889999999999999999999999974
No 10
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=1.4e-16 Score=129.68 Aligned_cols=78 Identities=23% Similarity=0.445 Sum_probs=73.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 122 FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 122 ~~pyC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
+.|||..||...+.++|++|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|+.
T Consensus 2 g~~yC~~~y~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~f~~~C~~ 79 (80)
T 1x3h_A 2 SSGSSGKDFLAMFSPKCGGCNRPVL-ENYLSAMDTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHRRGSGPSS 79 (80)
T ss_dssp CCCCCCCCCCCCCSCBCTTTCCBCC-SSCEEETTEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHHHSSSCCC
T ss_pred CCccchhHHhhhcCCccccCCCeec-ceeEEECCCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHHcCCCCCC
Confidence 3799999999999999999999997 58899999999999999999999999888999999999999999999999974
No 11
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=1.6e-16 Score=129.36 Aligned_cols=78 Identities=21% Similarity=0.438 Sum_probs=73.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 122 FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 122 ~~pyC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
+.|||..||...+.++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 2 g~~yC~~cy~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~s 79 (80)
T 2cuq_A 2 SSGSSGPCYENKFAPRCARCSKTLT-QGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVACFGELFASGPSS 79 (80)
T ss_dssp CCCSCCCCCCCCSSCCCTTTCCCCC-SCCEESSSSEECTTTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHHTTCSTTC
T ss_pred CcEEcHHHHccccCCcCCCCCCEec-CcEEEECCchhhhhhCCcccCCCcCCCCeeEeECCEEECHHHHHHHcCCCCCC
Confidence 4799999999999999999999996 56899999999999999999999999889999999999999999999999963
No 12
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.4e-16 Score=137.31 Aligned_cols=103 Identities=17% Similarity=0.315 Sum_probs=83.9
Q ss_pred CCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCC--CceEeeCCcccchhhhhhhccccccccCCccCCCCcce
Q 010849 135 YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE--HEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGL 212 (499)
Q Consensus 135 ~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~--~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~ 212 (499)
.++|++|+++|....++.++++.||++||+|..|+++|.+ ..|+.+++++||+.||.++|+|+|..|.. +. +
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c~~c~~---~~---~ 76 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGGHMGSG---GD---V 76 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCCSSCBS---CS---C
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcccCcCCC---Cc---e
Confidence 5789999999986668999999999999999999999985 58999999999999999999999998862 11 1
Q ss_pred EEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 213 IEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 213 I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
| + |.+.+. .++.|.+.|+++||..|+....+
T Consensus 77 ~-----------------~--------~~~~~~-~g~~f~~~~~~~~C~~~~~~~~~ 107 (114)
T 1j2o_A 77 M-----------------V--------VGEPTL-MGGEFGDEDERLITRLENTQFDA 107 (114)
T ss_dssp C-----------------C--------SSCSST-TSSBCCCSSSCCCEEEECTTCCC
T ss_pred e-----------------E--------cCCccC-CCCeeEEcCCEeecchhhhcccc
Confidence 1 1 334333 34456788899999999876654
No 13
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.64 E-value=2.7e-16 Score=128.55 Aligned_cols=77 Identities=19% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEee-CCcccchhhhhhhccccccc
Q 010849 122 FPPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLS-GKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 122 ~~pyC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~-dg~~YC~~CY~~~f~pkC~~ 200 (499)
+.|||..||. .+.++|++|+++|. +++|.++++.||++||+|..|+++|.+..|+.. ++++||+.||.++|+|+|++
T Consensus 3 g~~yC~~~y~-~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f~~~C~~ 80 (81)
T 2dlo_A 3 SGSSGEGCYV-ATLEKCATCSQPIL-DRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKFASGPSS 80 (81)
T ss_dssp CCCCCCCCCC-SSCCBCTTTCCBCC-SCCEEETTEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHTTSSSCC
T ss_pred CCEECHHHhh-cCCCccccCCCeec-ceeEEECCccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHHhcCcCCC
Confidence 3899999998 78999999999997 689999999999999999999999998888876 78999999999999999974
No 14
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.61 E-value=8.2e-16 Score=125.66 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCC-ceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010849 123 PPYDPSHYYPRSYKVCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 123 ~pyC~~~y~~~~~~~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~ 199 (499)
.|||..||...+.++|.+|+++|.++ .+|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 3 ~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~~~ 80 (82)
T 1x63_A 3 SGSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHETKFASGPS 80 (82)
T ss_dssp SCCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHHHTSCCCS
T ss_pred CcCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEeeCCEEECHHHHHHHhCCCCC
Confidence 78999999999999999999999754 579999999999999999999999988999999999999999999999985
No 15
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.60 E-value=3.8e-17 Score=154.59 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=93.8
Q ss_pred cCCCccccc--chHHHHHHhhcc-cCCCCCCCCCCCCCCCCC--------------------------------------
Q 010849 96 PNGQRWRSN--TDEDYAWALQDS-QLNPSFPPYDPSHYYPRS-------------------------------------- 134 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~~-l~~~~~~pyC~~~y~~~~-------------------------------------- 134 (499)
..+..||.+ .|..|.++|... +....+.+||..||...+
T Consensus 25 a~g~~wH~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~~c~~c~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~ 104 (192)
T 1b8t_A 25 CEGSSFHKSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPN 104 (192)
T ss_dssp ETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred eCCceecCCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcCccccccccccccEecCCCcccccccccccccCCCCcC
Confidence 356789988 999999988653 222234788888774332
Q ss_pred ----------CCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCc
Q 010849 135 ----------YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQY 204 (499)
Q Consensus 135 ----------~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~ 204 (499)
.++|.+|+++|.+++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+|+++
T Consensus 105 ~~~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~ 184 (192)
T 1b8t_A 105 ASRMAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 184 (192)
T ss_dssp CCCCCCCCCCCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred ccccccccCCCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCc
Confidence 2359999999987888999999999999999999999998889999999999999999999999999998
Q ss_pred cCC
Q 010849 205 IPT 207 (499)
Q Consensus 205 I~~ 207 (499)
+-.
T Consensus 185 ~g~ 187 (192)
T 1b8t_A 185 AGA 187 (192)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 16
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.57 E-value=2.1e-15 Score=121.69 Aligned_cols=71 Identities=20% Similarity=0.504 Sum_probs=66.6
Q ss_pred CCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccch-hhhhhhccccccccCCccC
Q 010849 136 KVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHK-SCFKELTHPKCEVCHQYIP 206 (499)
Q Consensus 136 ~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~-~CY~~~f~pkC~~C~~~I~ 206 (499)
++|.+|+++|..++.|.++++.||++||+|..|+++|.+..|+.+++++||+ .||.++|+++|..|++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~~C~~C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGPKGFGRGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSCCCSSCCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCccCCCcCCcee
Confidence 5799999999878999999999999999999999999988999999999999 6999999999999997654
No 17
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.56 E-value=3.3e-15 Score=121.87 Aligned_cols=76 Identities=21% Similarity=0.524 Sum_probs=70.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCC-CceE-eeCCcccchhhhhhhcccccc
Q 010849 123 PPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITE-HEFS-LSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 123 ~pyC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~-~~F~-~~dg~~YC~~CY~~~f~pkC~ 199 (499)
.|||..||...+.++|++|+++|. ++++.++++.||++||+|..|+++|.. ..|. .+++++||+.||.++|++.|.
T Consensus 3 ~~yC~~~y~~~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~~~~s 80 (81)
T 1x6a_A 3 SGSSGKDYWGKFGEFCHGCSLLMT-GPFMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVSGPSS 80 (81)
T ss_dssp CCCCCCCSSCCSSCBCTTTCCBCC-SCCBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHCTTSC
T ss_pred CccchhHHhhhcCCcCccCCCCcC-ceEEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhcCCCC
Confidence 789999999999999999999997 889999999999999999999999974 5677 489999999999999999875
No 18
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.55 E-value=2.2e-15 Score=123.07 Aligned_cols=73 Identities=25% Similarity=0.476 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCcc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYI 205 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I 205 (499)
.+.++|.+|+++|.+++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..|++..
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~gcg~g~ 77 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGA 77 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHCC----------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHhCCcccccCCcc
Confidence 3568999999999878899999999999999999999999988899999999999999999999999998764
No 19
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.7e-15 Score=119.20 Aligned_cols=72 Identities=24% Similarity=0.516 Sum_probs=66.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccC----CCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhh
Q 010849 122 FPPYDPSHYYPRSYKVCGGCNCDIG----YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKEL 193 (499)
Q Consensus 122 ~~pyC~~~y~~~~~~~C~~C~k~I~----~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~ 193 (499)
+.|||..||...+.++|++|+++|. ....+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++
T Consensus 2 ~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~yC~~cy~~l 77 (77)
T 2egq_A 2 SSGSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVFHQEQVYCPDCAKKL 77 (77)
T ss_dssp CSSCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCEETTEECCHHHHHHC
T ss_pred CCeEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEeECCEEEChHHhccC
Confidence 4799999999999999999999997 24889999999999999999999999988899999999999999763
No 20
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.4e-14 Score=118.78 Aligned_cols=68 Identities=25% Similarity=0.510 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 132 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 132 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
....++|.+|+++|.++++|.++++.||++||+|..|+++|.+ .|+.+++++||+.||.++|+++|..
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~-~~~~~~g~~yC~~~y~~~fg~~C~~ 79 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG-EYISKDGVPYCESDYHAQFGSGPSS 79 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS-CCEEETTEEECTTHHHHHTTCCSTT
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC-CeEEECCEEECHHHHHHHcCCCCCC
Confidence 4467899999999987899999999999999999999999986 7999999999999999999999974
No 21
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=1.3e-14 Score=121.04 Aligned_cols=70 Identities=21% Similarity=0.454 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 130 YYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 130 y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
+...+.++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..
T Consensus 20 ~~~~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~c~s 89 (90)
T 2dar_A 20 PAGKRTPMCAHCNQVIR-GPFLVALGKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFASGPSS 89 (90)
T ss_dssp CTTTCCCBBSSSCCBCC-SCEEEETTEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCccCCCEec-ceEEEECCccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcCCCCCC
Confidence 45567899999999995 88999999999999999999999999889999999999999999999999963
No 22
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.52 E-value=8.5e-15 Score=118.27 Aligned_cols=70 Identities=16% Similarity=0.417 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCccC---CCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccC
Q 010849 133 RSYKVCGGCNCDIG---YGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCH 202 (499)
Q Consensus 133 ~~~~~C~~C~k~I~---~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~ 202 (499)
.+.++|.+|+++|. +.++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|..+.
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~~~C~~~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGMDTDISGPSS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCCCCCSSSSSC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhhhCCcCCCCC
Confidence 46789999999997 34899999999999999999999999988999999999999999999999999875
No 23
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-14 Score=116.51 Aligned_cols=70 Identities=16% Similarity=0.442 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccch-hhhhhhccccccc
Q 010849 131 YPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHK-SCFKELTHPKCEV 200 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~-~CY~~~f~pkC~~ 200 (499)
+..+.++|.+|+++|.+++.|.++++.||++||+|..|+++|.+..|+.+++++||+ .||.++|+|+|..
T Consensus 5 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~kc~g 75 (76)
T 2cu8_A 5 SSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGSGPSS 75 (76)
T ss_dssp CCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHHHSCSSCSC
T ss_pred cCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHHhcccccCC
Confidence 345678999999999878999999999999999999999999988899999999999 7999999999963
No 24
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.5e-14 Score=114.46 Aligned_cols=67 Identities=19% Similarity=0.452 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
.+.++|.+|+++|. ++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+++|.+
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~g 69 (69)
T 2cur_A 3 SGSSGCVKCNKAIT-SGGITYQDQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVSGPSSG 69 (69)
T ss_dssp CCCCCCSSSCCCCC-TTCEEETTEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHTCSCCC
T ss_pred CCcCCCcccCCEeC-cceEEECccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhcCCCCC
Confidence 46789999999996 67899999999999999999999999889999999999999999999999974
No 25
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.51 E-value=1.6e-14 Score=114.54 Aligned_cols=67 Identities=19% Similarity=0.399 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
.+.++|.+|+++|. ++.+.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~c~~ 69 (70)
T 2d8z_A 3 SGSSGCVQCKKPIT-TGGVTYREQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLYASGPSS 69 (70)
T ss_dssp CCCCBCSSSCCBCC-SSEEESSSSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHTCCCCTT
T ss_pred CCCCCCcccCCeec-cceEEECccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHhccccCC
Confidence 46789999999996 67899999999999999999999999889999999999999999999999963
No 26
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=2.3e-14 Score=114.04 Aligned_cols=68 Identities=21% Similarity=0.484 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCccCCC-ceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 133 RSYKVCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
.+.++|.+|+++|.++ .++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1x4k_A 3 SGSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHASGPSS 71 (72)
T ss_dssp SCCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTSSCCCC
T ss_pred ccCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCccCCeEECHHHHhHHhCCCCCC
Confidence 4578999999999764 6899999999999999999999999989999999999999999999999963
No 27
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=3.5e-14 Score=118.59 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCcc
Q 010849 130 YYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYI 205 (499)
Q Consensus 130 y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I 205 (499)
|......+|.+|++.|.+++.|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|..+..+.
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~kc~~~~g~g 85 (91)
T 2d8y_A 10 FQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFG 85 (91)
T ss_dssp SCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSCCCSCCCSCCC
T ss_pred cCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhCCCcCccCCcC
Confidence 3445678999999999877899999999999999999999999988899999999999999999999998555443
No 28
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.50 E-value=2e-14 Score=114.39 Aligned_cols=68 Identities=19% Similarity=0.431 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCccCC-CceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccc
Q 010849 133 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEV 200 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~ 200 (499)
.+.++|.+|+++|.+ +.++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~~~C~~ 71 (72)
T 1wyh_A 3 SGSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFASGPSS 71 (72)
T ss_dssp CCCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHHTSCCCCC
T ss_pred ccCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHHHccCcCCC
Confidence 457899999999976 48899999999999999999999999889999999999999999999999963
No 29
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.47 E-value=4.7e-14 Score=112.46 Aligned_cols=66 Identities=23% Similarity=0.575 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCccCC---CceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccc
Q 010849 133 RSYKVCGGCNCDIGY---GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKC 198 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~---g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC 198 (499)
.+.++|.+|+++|.. ..++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKDISGPSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHTCCCSSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCcccCCCC
Confidence 467899999999973 478999999999999999999999998899999999999999999999986
No 30
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.47 E-value=2.8e-14 Score=111.93 Aligned_cols=64 Identities=23% Similarity=0.501 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPK 197 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pk 197 (499)
.+.++|++|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+||
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~k 66 (66)
T 1nyp_A 3 MGVPICGACRRPIE-GRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV 66 (66)
T ss_dssp CCCCEETTTTEECC-SCEECCTTSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHHHCSCC
T ss_pred cCCCCCcccCCEec-ceEEEECccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHHHhCCC
Confidence 45789999999997 88999999999999999999999999989999999999999999999986
No 31
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.46 E-value=5e-14 Score=113.53 Aligned_cols=67 Identities=21% Similarity=0.371 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCccCC-CceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010849 133 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~ 199 (499)
.+.++|.+|+++|.. +.++.++|+.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~~~C~ 76 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCWI 76 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHHHCCCC--
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHHHhhcccC
Confidence 457899999999974 5678999999999999999999999988899999999999999999999996
No 32
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.42 E-value=2.5e-15 Score=133.10 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=85.8
Q ss_pred cCCCccccc--chHHHHHHhhc---ccCCCCCCCCCCCCCCCCCCC--CCCCCCCccCCC-ceEeecCccccCCCcccCC
Q 010849 96 PNGQRWRSN--TDEDYAWALQD---SQLNPSFPPYDPSHYYPRSYK--VCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRS 167 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~---~l~~~~~~pyC~~~y~~~~~~--~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~ 167 (499)
..+..||.+ .|..|..+|.+ .+....+.|||..+|...+.+ +|.+|+++|... .++.++++.||++||+|..
T Consensus 20 a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~ 99 (131)
T 2xjy_A 20 AIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAA 99 (131)
T ss_dssp ETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTSEEEEETTEEEEGGGCBCTT
T ss_pred ECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccceeEeeCCceECccCcccCC
Confidence 456789998 99999999852 233333489999999877777 999999999753 5789999999999999999
Q ss_pred CCCCCC-CCceEeeCCcccchhhhhhhcccc
Q 010849 168 CGYPIT-EHEFSLSGKDPYHKSCFKELTHPK 197 (499)
Q Consensus 168 C~~~L~-~~~F~~~dg~~YC~~CY~~~f~pk 197 (499)
|+++|. +..|+..++++||..||.++++++
T Consensus 100 C~~~L~~g~~f~~~~~~~~C~~c~~~~~~~~ 130 (131)
T 2xjy_A 100 CQKHFCVGDRYLLINSDIVCEQDIYEWTKIN 130 (131)
T ss_dssp TCCBCCTTCEEEEETTEEEEGGGHHHHHHHH
T ss_pred CCCCCCCCCEEEEECCEEEcHHHHHHHhhcc
Confidence 999995 667999999999999999988753
No 33
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.42 E-value=4.6e-15 Score=139.92 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=85.5
Q ss_pred cCCCccccc--chHHHHHHhhc---ccCCCCCCCCCCCCCCCCCCC--CCCCCCCccCCC-ceEeecCccccCCCcccCC
Q 010849 96 PNGQRWRSN--TDEDYAWALQD---SQLNPSFPPYDPSHYYPRSYK--VCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRS 167 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~---~l~~~~~~pyC~~~y~~~~~~--~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~ 167 (499)
..+..||.+ .|..|.++|.. .+....+.|||..||...+.+ +|.+|+++|... .++.++++.||++||+|..
T Consensus 23 a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~ 102 (188)
T 1rut_X 23 AMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCST 102 (188)
T ss_dssp ETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTTSEEEEETTEEECGGGCBCTT
T ss_pred ecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccCcEEEEcCCCEEeCCCCeECC
Confidence 356789998 99999999874 333333499999999777777 799999999754 4789999999999999999
Q ss_pred CCCCCC-CCceEeeCCcccchhhhhhhccccccccCC
Q 010849 168 CGYPIT-EHEFSLSGKDPYHKSCFKELTHPKCEVCHQ 203 (499)
Q Consensus 168 C~~~L~-~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~ 203 (499)
|+++|. +..|+..++++||+.||.+++.++|...+.
T Consensus 103 C~~~L~~g~~f~~~~g~~yC~~c~~~~~~~~~~~~g~ 139 (188)
T 1rut_X 103 CRNRLVPGDRFHYINGSLFCEHDRPTALINGHLNSGG 139 (188)
T ss_dssp TCCBCCTTCEEEEETTEEEEGGGCCTTTC--------
T ss_pred CCCCCCCCCeEEEECCeEECHHHHHHHhcccccccCC
Confidence 999996 567999999999999999999999987765
No 34
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.42 E-value=1.7e-13 Score=108.59 Aligned_cols=66 Identities=21% Similarity=0.450 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~ 199 (499)
.+.++|.+|+++|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|++++.
T Consensus 3 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~~~~ 68 (70)
T 2d8x_A 3 SGSSGCHQCGEFII-GRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKASGPS 68 (70)
T ss_dssp CCSSBCSSSCCBCC-SCCEEETTEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCCCSC
T ss_pred CCCCcCccCCCEec-ceEEEECcccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCCCCC
Confidence 35789999999997 7899999999999999999999999998999999999999999999998753
No 35
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.40 E-value=2.2e-13 Score=113.29 Aligned_cols=66 Identities=20% Similarity=0.512 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~ 199 (499)
...++|.+|++.|. ++++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|+|.
T Consensus 23 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~p~~~ 88 (89)
T 1x64_A 23 QRMPLCDKCGSGIV-GAVVKARDKYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARTSGPSS 88 (89)
T ss_dssp CSCCBCTTTCCBCC-SCCEESSSCEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSSSCCC
T ss_pred CcCCCcccCCCEec-ccEEEECCceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45688999999997 6889999999999999999999999988899999999999999999999985
No 36
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.39 E-value=1.2e-13 Score=112.41 Aligned_cols=66 Identities=18% Similarity=0.454 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~ 199 (499)
...++|.+|+++|. +++|.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p~g~ 78 (79)
T 1x62_A 13 QKLPMCDKCGTGIV-GVFVKLRDRHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSGPSS 78 (79)
T ss_dssp CCCCCCSSSCCCCC-SSCEECSSCEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSSCCC
T ss_pred CCCCccccCCCCcc-CcEEEECcceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCCCCC
Confidence 45689999999997 5799999999999999999999999987899999999999999999999874
No 37
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.39 E-value=1.3e-14 Score=127.71 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=85.3
Q ss_pred cCCCccccc--chHHHHHHhhc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCC-CceEeecCcccc--CCCcccCCCC
Q 010849 96 PNGQRWRSN--TDEDYAWALQD-SQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGY-GNYLGCMGTYFH--PNCFRCRSCG 169 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~-~l~~~~~~pyC~~~y~~~~~~~C~~C~k~I~~-g~~l~algk~wH--p~CF~C~~C~ 169 (499)
..+..||.+ .|..|.++|.. .+....+.|||..||...+.++|.+|+++|.. +.+|.++++.|| ++||+|..|+
T Consensus 21 a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~ 100 (126)
T 2xqn_T 21 AENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCS 100 (126)
T ss_dssp ETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTC
T ss_pred eCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCC
Confidence 456789998 99999998864 23233348999999988899999999999975 468999999999 9999999999
Q ss_pred CCCCCCceEeeCCcccchhhhhhhc
Q 010849 170 YPITEHEFSLSGKDPYHKSCFKELT 194 (499)
Q Consensus 170 ~~L~~~~F~~~dg~~YC~~CY~~~f 194 (499)
++|.+..|+..++++||..+|.++|
T Consensus 101 ~~l~~~~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 101 KCLIGQKFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CBCTTSEEEEETTEEESSHHHHHSC
T ss_pred CccCCCeeEeECCEEcchHHhhhhc
Confidence 9999889999999999998887765
No 38
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=3.3e-13 Score=110.07 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCC-cccchhhhhhhcc
Q 010849 123 PPYDPSHYYPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGK-DPYHKSCFKELTH 195 (499)
Q Consensus 123 ~pyC~~~y~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg-~~YC~~CY~~~f~ 195 (499)
.+||..||...+.++|++|+++|. +++|.++++.||++||+|..|+++|....++..++ .+||..||.+++.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred CCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 579999999999999999999997 78999999999999999999999998766666555 5799999987543
No 39
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=3.1e-13 Score=110.28 Aligned_cols=65 Identities=20% Similarity=0.403 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~ 199 (499)
.+.++|.+|+++|. +++|.++++.||++||+|..|+++|.+.. +.+++++||+.||.++|+|++.
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~a~~~~~H~~CF~C~~C~~~L~~~~-f~~~g~~yC~~cy~~~f~p~~s 77 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLIFKNDPYHPDHFNCANCGKELTADA-RELKGELYCLPCHDKMGVSGPS 77 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCCCSSSCCCTTTSBCSSSCCBCCTTC-EEETTEEECHHHHHTTSCCSSC
T ss_pred cCCCCCccCCCEec-ceEEEECcceeCCCCCEeCCCCCccCCCC-EeECCEEeCHHHHHHhCCCCCC
Confidence 45789999999997 88999999999999999999999999864 5899999999999999999764
No 40
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.38 E-value=4.1e-13 Score=106.88 Aligned_cols=68 Identities=22% Similarity=0.524 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCccCC-CceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcccccccc
Q 010849 133 RSYKVCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVC 201 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C 201 (499)
.+.++|.+|+++|.. +.++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|. +|..+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~-~~~~~ 71 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE-SGPSS 71 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH-TCSSC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc-cCCCC
Confidence 457899999999975 468999999999999999999999998889999999999999999884 45443
No 41
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.37 E-value=3.8e-13 Score=108.06 Aligned_cols=64 Identities=25% Similarity=0.531 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCC-CCceEeeCCcccchhhhhhhcccc
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPIT-EHEFSLSGKDPYHKSCFKELTHPK 197 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~~YC~~CY~~~f~pk 197 (499)
.+.++|++|+++|. +++|.++++.||++||+|..|+++|. +..|+.+++++||..||.+++...
T Consensus 3 ~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~~ 67 (73)
T 1wig_A 3 SGSSGCDSCEKYIT-GRVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTED 67 (73)
T ss_dssp CSCCSCSSSCCCCS-SCCBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSSS
T ss_pred cCcCCcccCCCEec-CeeEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhccc
Confidence 46789999999996 68999999999999999999999998 778999999999999999977653
No 42
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.34 E-value=7.9e-13 Score=116.53 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=67.9
Q ss_pred CCCCCC--CCCCCCCccCC-CceEeecCccccCCCcccCCCCCCCC-CCceEeeCCcccchhhhhhhccccccccCCccC
Q 010849 131 YPRSYK--VCGGCNCDIGY-GNYLGCMGTYFHPNCFRCRSCGYPIT-EHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIP 206 (499)
Q Consensus 131 ~~~~~~--~C~~C~k~I~~-g~~l~algk~wHp~CF~C~~C~~~L~-~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~ 206 (499)
...+.. +|.+|++.|.. +.++.++++.||+.||+|..|+++|. +..|+..++++||+.||.++|+++|..|...+.
T Consensus 2 ~r~fg~~~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~~~~~~~~~ 81 (123)
T 2l3k_A 2 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKINGGSGGSGGS 81 (123)
T ss_dssp CSSSSSSCCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHTCCCCCCSC
T ss_pred hhhhCCCCcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhccccCCCCCCCc
Confidence 344555 89999999975 45789999999999999999999994 567999999999999999999999999888766
Q ss_pred CC
Q 010849 207 TN 208 (499)
Q Consensus 207 ~~ 208 (499)
..
T Consensus 82 ~~ 83 (123)
T 2l3k_A 82 GG 83 (123)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 43
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.34 E-value=9.9e-13 Score=103.98 Aligned_cols=65 Identities=20% Similarity=0.378 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCccCCCc-eEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhcc
Q 010849 131 YPRSYKVCGGCNCDIGYGN-YLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH 195 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~-~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~ 195 (499)
...+.++|++|+++|..++ ++.++++.||++||+|..|+++|.+..|+.+++++||+.||.++|+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHHHHTC
T ss_pred cCcCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHHHhhC
Confidence 3457789999999997555 5789999999999999999999998889999999999999999875
No 44
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.32 E-value=8.9e-14 Score=128.90 Aligned_cols=104 Identities=17% Similarity=0.326 Sum_probs=86.0
Q ss_pred cCCCccccc--chHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCc-eEeecCccccCCCcccCCCCCCC
Q 010849 96 PNGQRWRSN--TDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGN-YLGCMGTYFHPNCFRCRSCGYPI 172 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~~l~~~~~~pyC~~~y~~~~~~~C~~C~k~I~~g~-~l~algk~wHp~CF~C~~C~~~L 172 (499)
..+..||.+ .|..|.++|........+.|||..||...+.++|.+|+++|..++ ++.++++.||++||+|..|+++|
T Consensus 24 a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L 103 (169)
T 2rgt_A 24 ALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQL 103 (169)
T ss_dssp CSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBC
T ss_pred ECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccccccccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCC
Confidence 457799998 999999998754333445999999998889999999999997554 56899999999999999999999
Q ss_pred C-CCceEe-eCCcccchhhhhhhcccccc
Q 010849 173 T-EHEFSL-SGKDPYHKSCFKELTHPKCE 199 (499)
Q Consensus 173 ~-~~~F~~-~dg~~YC~~CY~~~f~pkC~ 199 (499)
. +..|+. .++++||+.||.+++...+.
T Consensus 104 ~~g~~f~~~~~g~~~C~~c~~~~~~~~~~ 132 (169)
T 2rgt_A 104 ATGDEFYLMEDSRLVCKADYETAKQGGSG 132 (169)
T ss_dssp CTTCEEEECTTSCEEEHHHHHHHHHCC--
T ss_pred CCCCceEEccCCeEECHHHHHHHhhccCC
Confidence 8 456654 58999999999998876553
No 45
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.32 E-value=1.3e-12 Score=107.18 Aligned_cols=67 Identities=18% Similarity=0.379 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceE--eeCCcccchhhhhhhccccc
Q 010849 132 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFS--LSGKDPYHKSCFKELTHPKC 198 (499)
Q Consensus 132 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~--~~dg~~YC~~CY~~~f~pkC 198 (499)
....++|.+|++.|..++.+.++++.||++||+|..|+++|....|+ .+++++||+.||.++|++-+
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~ 80 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQTDSGPS 80 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCCCCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhhhcCCC
Confidence 34678999999999878889999999999999999999999988887 46999999999999887654
No 46
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=105.93 Aligned_cols=73 Identities=19% Similarity=0.494 Sum_probs=58.5
Q ss_pred CCcccchhhhhhhccccccccCCccCC---CCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPT---NGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGR 257 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~---~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr 257 (499)
+++|||++||.++|+++|..|+++|.+ .. ..+.+... .||..||+|..|++.+ .+..|...||+
T Consensus 1 g~~~yC~~cy~~~~~~~C~~C~~~I~~~g~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L--~~~~f~~~~~~ 67 (77)
T 2egq_A 1 GSSGSSGDCYKNFVAKKCAGCKNPITGFGKGS-SVVAYEGQ----------SWHDYCFHCKKCSVNL--ANKRFVFHQEQ 67 (77)
T ss_dssp CCSSCCTTCCCSCCCCCCSSSCCCCCCCSSCC-CEEEETTE----------EEETTTCBCSSSCCBC--TTSCCCEETTE
T ss_pred CCCeEchhHhchhhCccCcccCCcccCCCCCc-eeEEECcc----------eeCcccCEehhcCCCC--CCCccEeECCE
Confidence 578999999999999999999999996 22 24555432 2499999999999965 44445677899
Q ss_pred cccchhhhh
Q 010849 258 SLCLECMES 266 (499)
Q Consensus 258 ~~C~~C~~s 266 (499)
+||..||..
T Consensus 68 ~yC~~cy~~ 76 (77)
T 2egq_A 68 VYCPDCAKK 76 (77)
T ss_dssp ECCHHHHHH
T ss_pred EEChHHhcc
Confidence 999999965
No 47
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.30 E-value=1.4e-12 Score=106.12 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCcccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 260 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C 260 (499)
++.+||+.||.++|+++|..|+++|.+. .|.+... .||+.||+|..|++.+..+..|+...||++||
T Consensus 1 g~~~yC~~~y~~~~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C 67 (81)
T 1x6a_A 1 GSSGSSGKDYWGKFGEFCHGCSLLMTGP---FMVAGEF----------KYHPECFACMSCKVIIEDGDAYALVQHATLYC 67 (81)
T ss_dssp CCCCCCCCCSSCCSSCBCTTTCCBCCSC---CBCCTTC----------CBCTTSCBCTTTCCBCCTTSCEEECSSSCEEE
T ss_pred CCCccchhHHhhhcCCcCccCCCCcCce---EEEECCc----------eeccccCCccCCCCccCCCCcEEEeeCCEEEC
Confidence 4689999999999999999999999953 3444432 24999999999999665444443358899999
Q ss_pred chhhhhhcc
Q 010849 261 LECMESAIM 269 (499)
Q Consensus 261 ~~C~~sav~ 269 (499)
..||.....
T Consensus 68 ~~c~~~~~~ 76 (81)
T 1x6a_A 68 GKCHNEVVS 76 (81)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999988765
No 48
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.29 E-value=1.6e-13 Score=128.60 Aligned_cols=98 Identities=17% Similarity=0.349 Sum_probs=81.9
Q ss_pred cCCCccccc--chHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCc-eEeecCccccCCCcccCCCCCCC
Q 010849 96 PNGQRWRSN--TDEDYAWALQDSQLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYGN-YLGCMGTYFHPNCFRCRSCGYPI 172 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~~l~~~~~~pyC~~~y~~~~~~~C~~C~k~I~~g~-~l~algk~wHp~CF~C~~C~~~L 172 (499)
..+..||.+ .|..|.++|........+.|||..||...+.++|.+|+++|...+ ++.++++.||++||+|..|+++|
T Consensus 78 a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L 157 (182)
T 2jtn_A 78 ALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQL 157 (182)
T ss_dssp ETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCC
T ss_pred ecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCC
Confidence 356789998 899999988754333345899999999999999999999997544 56899999999999999999999
Q ss_pred C-CCceE-eeCCcccchhhhhhh
Q 010849 173 T-EHEFS-LSGKDPYHKSCFKEL 193 (499)
Q Consensus 173 ~-~~~F~-~~dg~~YC~~CY~~~ 193 (499)
. +..|+ ..++++||+.||.++
T Consensus 158 ~~g~~f~~~~~g~~yC~~cy~~~ 180 (182)
T 2jtn_A 158 ATGDEFYLMEDSRLVCKADYETA 180 (182)
T ss_dssp CTTCEEEECTTSCEECHHHHHHH
T ss_pred CCCCceEEccCCEEECHHHHHHh
Confidence 8 45665 458999999999874
No 49
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=114.65 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCC--CCceEeeCCcccchhhhhhhcc
Q 010849 132 PRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPIT--EHEFSLSGKDPYHKSCFKELTH 195 (499)
Q Consensus 132 ~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~--~~~F~~~dg~~YC~~CY~~~f~ 195 (499)
..+.++|++|+++|....++.++++.||++||+|..|+++|. +..|+.+++++||+.||.++|+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 345789999999998666799999999999999999999997 4689999999999999999885
No 50
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=105.62 Aligned_cols=76 Identities=26% Similarity=0.560 Sum_probs=60.0
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCcccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 260 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C 260 (499)
+|+|||+.||.++|+++|..|+++|.+.. .++.+... .||+.||+|..|++.+ .+..|...||++||
T Consensus 1 ~g~~yC~~~y~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L--~~~~f~~~~~~~~C 67 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFANTCAECQQLIGHDS-RELFYEDR----------HFHEGCFRCCRCQRSL--ADEPFTCQDSELLC 67 (82)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSSC-CBCCCSSC----------CCBTTTSBCTTTCCBC--SSCCEEEETTEEEE
T ss_pred CCceechhHhCcccCCcCccCCCccccCc-EEEEeCCc----------cccccCCeecCCCCcc--CCCccEeeCCEEEC
Confidence 58899999999999999999999999432 23444322 2499999999999965 45456677899999
Q ss_pred chhhhhhcc
Q 010849 261 LECMESAIM 269 (499)
Q Consensus 261 ~~C~~sav~ 269 (499)
..||.....
T Consensus 68 ~~c~~~~~~ 76 (82)
T 2ehe_A 68 NDCYCSAFS 76 (82)
T ss_dssp TTTSSCCGG
T ss_pred HHHHhhhcC
Confidence 999977643
No 51
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=100.81 Aligned_cols=59 Identities=22% Similarity=0.450 Sum_probs=54.7
Q ss_pred CCCCCCCCCccCC-CceEeecCcccc--CCCcccCCCCCCCCCCceEeeCCcccc-hhhhhhh
Q 010849 135 YKVCGGCNCDIGY-GNYLGCMGTYFH--PNCFRCRSCGYPITEHEFSLSGKDPYH-KSCFKEL 193 (499)
Q Consensus 135 ~~~C~~C~k~I~~-g~~l~algk~wH--p~CF~C~~C~~~L~~~~F~~~dg~~YC-~~CY~~~ 193 (499)
+++|++|+++|.. ++.|.++|+.|| ++||+|..|+++|.+..|+.+++++|| .+||.++
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 5689999999976 489999999999 999999999999999899999999999 8999875
No 52
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.26 E-value=3.1e-12 Score=103.79 Aligned_cols=74 Identities=18% Similarity=0.483 Sum_probs=60.5
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCcccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 260 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C 260 (499)
+|++||+.||.++|+++|..|+++|.+. .|.+... .||..||+|..|++.+ .+..|...||++||
T Consensus 1 gg~~yC~~cy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC 65 (80)
T 2cuq_A 1 GSSGSSGPCYENKFAPRCARCSKTLTQG---GVTYRDQ----------PWHRECLVCTGCQTPL--AGQQFTSRDEDPYC 65 (80)
T ss_dssp CCCCSCCCCCCCCSSCCCTTTCCCCCSC---CEESSSS----------EECTTTCBCSSSCCBC--TTCCEEECSSSEEE
T ss_pred CCcEEcHHHHccccCCcCCCCCCEecCc---EEEECCc----------hhhhhhCCcccCCCcC--CCCeeEeECCEEEC
Confidence 5899999999999999999999999874 4555432 2499999999999965 44446678899999
Q ss_pred chhhhhhcc
Q 010849 261 LECMESAIM 269 (499)
Q Consensus 261 ~~C~~sav~ 269 (499)
..||.....
T Consensus 66 ~~cy~~~f~ 74 (80)
T 2cuq_A 66 VACFGELFA 74 (80)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999987754
No 53
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=7.3e-12 Score=101.59 Aligned_cols=74 Identities=20% Similarity=0.227 Sum_probs=59.9
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCcccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 260 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C 260 (499)
++++||+.||.++|+++|..|+++|.+. .|.+... .||..||+|..|++++.. +. |...||++||
T Consensus 1 gg~~yC~~~y~~~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L~~-~~-~~~~~~~~yC 65 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFSPKCGGCNRPVLEN---YLSAMDT----------VWHPECFVCGDCFTSFST-GS-FFELDGRPFC 65 (80)
T ss_dssp CCCCCCCCCCCCCCSCBCTTTCCBCCSS---CEEETTE----------EECTTTCBCSSSCCBSCS-SC-CEESSSCEEC
T ss_pred CCCccchhHHhhhcCCccccCCCeecce---eEEECCC----------eEecCcCChhhCCCCCCC-Cc-EEeECCEEEC
Confidence 5789999999999999999999999973 4555432 239999999999996642 24 5567899999
Q ss_pred chhhhhhcc
Q 010849 261 LECMESAIM 269 (499)
Q Consensus 261 ~~C~~sav~ 269 (499)
..||.....
T Consensus 66 ~~~y~~~f~ 74 (80)
T 1x3h_A 66 ELHYHHRRG 74 (80)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 999987754
No 54
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.21 E-value=7.4e-12 Score=102.00 Aligned_cols=76 Identities=21% Similarity=0.453 Sum_probs=60.3
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCcccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 260 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C 260 (499)
++.+||++||.++|+++|..|+++|...+ ..|.+... .||..||+|..|++.+. +..|...||++||
T Consensus 1 ~~~~yC~~cy~~~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC 67 (82)
T 1x63_A 1 GSSGSSGKCTTREDSPKCKGCFKAIVAGD-QNVEYKGT----------VWHKDCFTCSNCKQVIG--TGSFFPKGEDFYC 67 (82)
T ss_dssp CCSCCCCCCCSCCCSCBCSSSCCBCCSSS-CEEECSSC----------EEETTTCCCSSSCCCCT--TSCEEEETTEEEE
T ss_pred CCCcCchhHHccccCCcCccCCcccccCc-eEEEECcc----------ccccccCchhhCCCccC--CCccEeeCCEEEC
Confidence 47899999999999999999999998643 23554432 24999999999999654 4345667899999
Q ss_pred chhhhhhcc
Q 010849 261 LECMESAIM 269 (499)
Q Consensus 261 ~~C~~sav~ 269 (499)
..||.....
T Consensus 68 ~~cy~~~f~ 76 (82)
T 1x63_A 68 VTCHETKFA 76 (82)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999987754
No 55
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.19 E-value=1.5e-11 Score=100.23 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=60.3
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCcccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLC 260 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C 260 (499)
++.+||+.||.++|+++|..|+++|.+. .|.+... .||+.||+|..|++++.. +.+|..+++.+||
T Consensus 1 ~~~~yC~~dy~~~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~-~~~~~~~~~~~~C 66 (81)
T 1v6g_A 1 GSSGSSGLDYQRLYGTRCFSCDQFIEGE---VVSALGK----------TYHPDCFVCAVCRLPFPP-GDRVTFNGKECMC 66 (81)
T ss_dssp CCCCCCCSCGGGSCCCBCTTTCCBCCSC---CEEETTE----------EECTTTSSCSSSCCCCCS-SSCEEEETTEEEE
T ss_pred CCCCcchHHHHhHhCCcCccccCEeccc---eEEECCc----------eeCccCCccccCCCCCCC-CCEEEeCCCCEEC
Confidence 3579999999999999999999999963 4665432 249999999999996643 4567777666799
Q ss_pred chhhhhhccC
Q 010849 261 LECMESAIMD 270 (499)
Q Consensus 261 ~~C~~sav~d 270 (499)
..|+..+...
T Consensus 67 ~~C~~~~~~~ 76 (81)
T 1v6g_A 67 QKCSLPVSVS 76 (81)
T ss_dssp HHHHSCCSSC
T ss_pred hhhhcccCCC
Confidence 9999877653
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.16 E-value=2e-11 Score=99.42 Aligned_cols=73 Identities=18% Similarity=0.366 Sum_probs=58.6
Q ss_pred CCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEec-CCccc
Q 010849 181 GKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLE-DGRSL 259 (499)
Q Consensus 181 dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~-dGr~~ 259 (499)
++++||+.||. ++.++|..|+++|.+. .|.+... . ||+.||+|..|++.+ .+..|... ||++|
T Consensus 2 ~g~~yC~~~y~-~~~~~C~~C~~~I~~~---~~~a~~~-----~-----~H~~CF~C~~C~~~L--~~~~f~~~~~g~~y 65 (81)
T 2dlo_A 2 SSGSSGEGCYV-ATLEKCATCSQPILDR---ILRAMGK-----A-----YHPGCFTCVVCHRGL--DGIPFTVDATSQIH 65 (81)
T ss_dssp CCCCCCCCCCC-SSCCBCTTTCCBCCSC---CEEETTE-----E-----ECTTTCBCSSSCCBC--TTSCEECCTTCCCE
T ss_pred cCCEECHHHhh-cCCCccccCCCeecce---eEEECCc-----c-----ccHHhcCcccCCCcc--CCCeeEECCCCEEE
Confidence 68999999999 7999999999999863 4555432 2 399999999999965 45556554 79999
Q ss_pred cchhhhhhcc
Q 010849 260 CLECMESAIM 269 (499)
Q Consensus 260 C~~C~~sav~ 269 (499)
|..||.....
T Consensus 66 C~~cy~~~f~ 75 (81)
T 2dlo_A 66 CIEDFHRKFA 75 (81)
T ss_dssp EHHHHHHHTT
T ss_pred CHHHHHHHhc
Confidence 9999987654
No 57
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.86 E-value=9.5e-11 Score=98.96 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=62.3
Q ss_pred cCCCccccc--chHHHHHHhhcc-cCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC-ceEeecCccccCCCcccCCCC
Q 010849 96 PNGQRWRSN--TDEDYAWALQDS-QLNPSFPPYDPSHYYPRSYKVCGGCNCDIGYG-NYLGCMGTYFHPNCFRCRSCG 169 (499)
Q Consensus 96 ~~~~~wh~e--~ce~c~r~Lq~~-l~~~~~~pyC~~~y~~~~~~~C~~C~k~I~~g-~~l~algk~wHp~CF~C~~C~ 169 (499)
..+..||.+ .|..|.++|... +....+.|||..+|...+.++|.+|+++|..+ .+|.++++.||++||+|..|+
T Consensus 24 a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 24 YKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp ETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred ECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhhhhcCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 356789988 888999988643 22233489999999999999999999999755 689999999999999999996
No 58
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.77 E-value=4.8e-09 Score=83.96 Aligned_cols=63 Identities=19% Similarity=0.364 Sum_probs=49.2
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
+|+++|..|+++|.+. .|.+... +||+.||+|..|++.+.. +..|...+|++||..|+..+..
T Consensus 3 ~~~~~C~~C~~~I~~~---~v~a~~~----------~wH~~CF~C~~C~~~L~~-~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 3 SGSSGCDSCEKYITGR---VLEAGEK----------HYHPSCALCVRCGQMFAE-GEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCCSCSSSCCCCSSC---CBCCSSC----------CBCTTTSCCSSSCCCCCS-SCCCEEETTEEECTTHHHHTSS
T ss_pred cCcCCcccCCCEecCe---eEEeCCC----------CCCCCcCEeCCCCCCCCC-CCeeEeeCCEEEChHHChHhhc
Confidence 5899999999999974 3444332 349999999999996543 4456677899999999988765
No 59
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=98.63 E-value=1.4e-08 Score=79.21 Aligned_cols=61 Identities=20% Similarity=0.424 Sum_probs=46.2
Q ss_pred ccccccccCCccCCCCcceEEeeccCccccccCCCCcC--CCCcccCCCCCccccCCceeEecCCcccc-chhhhhh
Q 010849 194 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEH--DHTSRCCSCERLESWNTRYYSLEDGRSLC-LECMESA 267 (499)
Q Consensus 194 f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H--~~CF~C~~C~r~~~~g~~~~~l~dGr~~C-~~C~~sa 267 (499)
|+++|..|+++|.+.+ ..|.+... +|| +.||+|..|++++ .+..|...||++|| ..|+..+
T Consensus 1 fa~~C~~C~~~I~~~~-~~v~a~~~----------~wH~~~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 1 HAVVCQGCHNAIDPEV-QRVTYNNF----------SWHASTECFLCSCCSKCL--IGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp -CEECTTTSSEECTTS-CEEEETTE----------EEETTTTTSBCTTTCCBC--TTSCCEEETTEEESSHHHHHTT
T ss_pred CcCCCcCCCCeeccCc-eEEEECCC----------ccCCCCCCEECCCCCCcC--CCCceEEECCEEecCHHHhhhh
Confidence 5789999999999632 24555432 249 9999999999954 55556678899999 9999765
No 60
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.63 E-value=2.1e-08 Score=79.24 Aligned_cols=65 Identities=20% Similarity=0.461 Sum_probs=49.2
Q ss_pred hhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 192 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 192 ~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
++|+++|..|+++|.+.+ ..|.+... . ||..||+|..|++.+. +..|...||++||..||.....
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 2 SSGSSGCQECKKTIMPGT-RKMEYKGS-----S-----WHETCFICHRCQQPIG--TKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp CSCCCCBSSSCCCCCSSS-CEEEETTE-----E-----EETTTTCCSSSCCCCC--SSSEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCcccCCc-eEEEECcC-----e-----ecccCCcccccCCccC--CCccCccCCeEECHHHHhHHhC
Confidence 468999999999999742 24555432 2 3999999999999654 4446677899999999987654
No 61
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.62 E-value=2.4e-08 Score=79.17 Aligned_cols=64 Identities=20% Similarity=0.345 Sum_probs=48.5
Q ss_pred hccccccccCCccCCC-CcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhc
Q 010849 193 LTHPKCEVCHQYIPTN-GAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAI 268 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~-~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav 268 (499)
++.++|..|+++|.+. ....|.+... +||..||+|..|++.+ .+..|...||++||..||..+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~----------~wH~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEER----------QWHNDCFNCKKCSLSL--VGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSC----------EECTTTCBCSSSCCBC--TTSCCEECSSSEECHHHHHTCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCc----------ccCcccCEeccCCCcC--CCCccEeECCEEEChhHcCccc
Confidence 4689999999999961 1124555432 2499999999999955 5666777889999999997664
No 62
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.62 E-value=2.5e-08 Score=82.70 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=53.0
Q ss_pred cchhhhhhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhh
Q 010849 185 YHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECM 264 (499)
Q Consensus 185 YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~ 264 (499)
.+...+...+.++|..|+++|.+. .|.+... . ||+.||+|..|++.+. +..|...||++||..||
T Consensus 15 ~~~~~~~~~~~~~C~~C~~~I~~~---~v~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~f~~~~g~~yC~~cy 79 (90)
T 2dar_A 15 RAEHIPAGKRTPMCAHCNQVIRGP---FLVALGK-----S-----WHPEEFNCAHCKNTMA--YIGFVEEKGALYCELCY 79 (90)
T ss_dssp CCEEECTTTCCCBBSSSCCBCCSC---EEEETTE-----E-----ECTTTCBCSSSCCBCS--SSCBEESSSCEECHHHH
T ss_pred hcccCCCCCCCCCCccCCCEecce---EEEECCc-----c-----ccccCCccCCCCCCCC--CCEeEeECCEEECHHHH
Confidence 344446678899999999999753 4555432 2 3999999999999654 44466788999999999
Q ss_pred hhhcc
Q 010849 265 ESAIM 269 (499)
Q Consensus 265 ~sav~ 269 (499)
.....
T Consensus 80 ~~~f~ 84 (90)
T 2dar_A 80 EKFFA 84 (90)
T ss_dssp HHHTS
T ss_pred HHHcC
Confidence 87754
No 63
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.61 E-value=2.2e-08 Score=80.37 Aligned_cols=65 Identities=14% Similarity=0.284 Sum_probs=49.5
Q ss_pred hhccccccccCCccCC--CCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 192 ELTHPKCEVCHQYIPT--NGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 192 ~~f~pkC~~C~~~I~~--~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
++|+++|..|+++|.+ .. ..|.+... .||..||+|..|++.+ .+..|...||++||..||.....
T Consensus 2 ~~~~~~C~~C~~~I~~~g~~-~~~~a~~~----------~wH~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~cy~~~f~ 68 (76)
T 1x68_A 2 SSGSSGCVACSKPISGLTGA-KFICFQDS----------QWHSECFNCGKCSVSL--VGKGFLTQNKEIFCQKCGSGMDT 68 (76)
T ss_dssp TTCCCCCTTTCCCCCTTTTC-CEEEETTE----------EEEGGGCBCTTTCCBC--SSSCEEEETTEEEETTTTCCCCC
T ss_pred CccCCCCccCCCcccCCCCc-eeEEECCc----------ccCcccCChhhCCCcC--CCCceEeECCEEECHHHhhhhhC
Confidence 4689999999999996 22 24555432 2499999999999965 45556678899999999987654
No 64
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.60 E-value=3.1e-08 Score=78.40 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=48.2
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
+++++|..|+++|.+.+ ..|.+... .||..||+|..|++.+ .+..|...||++||..||..+..
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~~~a~~~----------~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDG-AGVVALDR----------VFHVGCFVCSTCRAQL--RGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp SCCCCCSSSCSCCCSSS-CCEECSSS----------EECTTTCBCSSSCCBC--TTSCEEESSSCEEEHHHHHHHHH
T ss_pred CCCCCCccCCCccCCCc-eEEEECCC----------eEcccCCcccccCCcC--CcCcCEeeCCeEECHHHHHHHHc
Confidence 46899999999998742 24545432 2499999999999966 44445677889999999987753
No 65
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.59 E-value=2.8e-08 Score=78.24 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=48.0
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
++.++|..|+++|.+. .|.+.. +. ||+.||+|..|++.+ .+..|...||++||..||.....
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~-----~~-----~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~ 64 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTG---GVTYRE-----QP-----WHKECFVCTACRKQL--SGQRFTARDDFAYCLNCFCDLYA 64 (70)
T ss_dssp CCCCBCSSSCCBCCSS---EEESSS-----SE-----EETTTSBCSSSCCBC--TTSCCEESSSSEECHHHHHHHTC
T ss_pred CCCCCCcccCCeeccc---eEEECc-----cc-----cCCCCCccCCCCCcC--CcCceEeeCCeEECHHHHHHHhc
Confidence 5789999999999863 355543 22 399999999999955 44456678899999999987654
No 66
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.59 E-value=3.3e-08 Score=77.66 Aligned_cols=62 Identities=16% Similarity=0.431 Sum_probs=48.1
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
+++++|..|+++|.++ .|.+... . ||..||+|..|++.+ .+..|...||++||..||.....
T Consensus 3 ~~~~~C~~C~~~I~~~---~~~a~~~-----~-----~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG---GITYQDQ-----P-----WHADCFVCVTCSKKL--AGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp CCCCCCSSSCCCCCTT---CEEETTE-----E-----ECTTTTBCTTTCCBC--TTSCEEECSSCEEEHHHHHHHHT
T ss_pred CCcCCCcccCCEeCcc---eEEECcc-----c-----cccCcCEECCCCCCC--CCCccEeECCEEECHHHhHHHhc
Confidence 4789999999999864 4555432 2 399999999999965 44456678899999999987654
No 67
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=98.57 E-value=1.9e-08 Score=78.38 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=47.6
Q ss_pred hhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 192 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 192 ~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
+++.++|..|+++|.+. .+.+.. + .||+.||+|..|++++ .+..|...||++||..||..+..
T Consensus 2 ~~~~~~C~~C~~~I~~~---~~~a~~-----~-----~~H~~CF~C~~C~~~L--~~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 2 SMGVPICGACRRPIEGR---VVNAMG-----K-----QWHVEHFVCAKCEKPF--LGHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCCCCEETTTTEECCSC---EECCTT-----S-----BEETTTCBCTTTCCBC--SSSCCEEETTEEECHHHHHHHCS
T ss_pred CcCCCCCcccCCEecce---EEEECc-----c-----ccccCcCEECCCCCCC--CCCceEeECCcEECHHHHHHHhC
Confidence 35789999999999853 344433 2 2499999999999965 44445678899999999977643
No 68
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.57 E-value=4.7e-08 Score=77.04 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=47.7
Q ss_pred ccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 194 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 194 f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
+.++|..|+++|.+. .|.+... . ||+.||+|..|++.+ .+..|...||++||..||.....
T Consensus 4 ~~~~C~~C~~~I~~~---~~~a~~~-----~-----~H~~CF~C~~C~~~L--~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGR---VIKAMNN-----S-----WHPECFRCDLCQEVL--ADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp CSSBCSSSCCBCCSC---CEEETTE-----E-----ECTTTSBCSSSCCBC--SSSCCEEETTEEECHHHHHHHHC
T ss_pred CCCcCccCCCEecce---EEEECcc-----c-----ccccCCEeCCCCCcC--CCCccEeECCeEECHHHhhhhcC
Confidence 568999999999863 4555432 2 399999999999955 44456678899999999987765
No 69
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.56 E-value=3.7e-08 Score=77.83 Aligned_cols=65 Identities=23% Similarity=0.525 Sum_probs=48.5
Q ss_pred hhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 192 ELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 192 ~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
++++++|..|+++|...+ ..+.+.. + .||..||+|..|++.+ .+..|...||++||..||.....
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~~~a~~-----~-----~~H~~CF~C~~C~~~L--~~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1wyh_A 2 SSGSSGCSACGETVMPGS-RKLEYGG-----Q-----TWHEHCFLCSGCEQPL--GSRSFVPDKGAHYCVPCYENKFA 66 (72)
T ss_dssp CCCCCBCSSSCCBCCSSS-CEECSTT-----C-----CEETTTCBCTTTCCBT--TTSCEEEETTEEEEHHHHHHHTS
T ss_pred CccCCCCccCCCccccCc-cEEEECc-----c-----ccCcccCeECCCCCcC--CCCccCCcCCeEECHHHHHHHcc
Confidence 468899999999999632 1344432 2 2499999999999965 44446677899999999987654
No 70
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=98.55 E-value=3.2e-08 Score=77.77 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=47.8
Q ss_pred hhhccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010849 191 KELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 267 (499)
Q Consensus 191 ~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sa 267 (499)
..++.++|..|+++|.+.+ .++.+.. +. ||..||+|..|++.+..+ . |...||++||..||..+
T Consensus 7 ~~~~~~~C~~C~~~i~~~e-~~~~~~~-----~~-----~H~~CF~C~~C~~~L~~~-~-~~~~~g~~yC~~~y~~l 70 (72)
T 3f6q_B 7 QGSASATCERCKGGFAPAE-KIVNSNG-----EL-----YHEQCFVCAQCFQQFPEG-L-FYEFEGRKYCEHDFQML 70 (72)
T ss_dssp CCCTTCBCTTTCCBCCTTC-EEEEETT-----EE-----EETTTSSCTTTCCCCGGG-C-CEEETTEEECHHHHHHH
T ss_pred cCcCCccchhcCccccCCc-eEEEeCc-----Ce-----eCcCCCcccCCCCCCCCC-C-eEeECCeEeCHHHHHHh
Confidence 4467899999999999753 2344432 22 399999999999966533 3 55677999999999765
No 71
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=98.53 E-value=5.4e-08 Score=85.42 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=50.3
Q ss_pred hhhhccc--cccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010849 190 FKELTHP--KCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 267 (499)
Q Consensus 190 Y~~~f~p--kC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sa 267 (499)
|.++|++ +|..|+++|.+.+ ..+.+... .||..||+|..|++.+..+.. |...||++||..||..+
T Consensus 1 Y~r~fg~~~~C~~C~~~I~~~e-~~~~a~~~----------~~H~~CF~C~~C~~~L~~g~~-f~~~~g~~yC~~cy~~~ 68 (123)
T 2l3k_A 1 YLRLFGQDGLCASCDKRIRAYE-MTMRVKDK----------VYHLECFKCAACQKHFSVGDR-YLLINSDIVCEQDIYEW 68 (123)
T ss_dssp CCSSSSSSCCCSSSSCCCCTTC-CCCCCSSC----------CCCTTTCBCTTTCCBCCTTCE-EEECSSSEEEGGGHHHH
T ss_pred ChhhhCCCCcccCCCCeecCCc-eEEEECCc----------ccccccCccccCCCCCCCCCc-EEeeCCEEEcHHHhHHH
Confidence 5678988 9999999998643 13344322 349999999999997654555 45667899999999766
Q ss_pred c
Q 010849 268 I 268 (499)
Q Consensus 268 v 268 (499)
.
T Consensus 69 ~ 69 (123)
T 2l3k_A 69 T 69 (123)
T ss_dssp H
T ss_pred h
Confidence 4
No 72
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.49 E-value=7.6e-08 Score=78.08 Aligned_cols=61 Identities=20% Similarity=0.413 Sum_probs=46.9
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
.+.++|..|+++|.+. .|.+... .||+.||+|..|++.+ .+.+| ..||++||..||.....
T Consensus 13 ~~~~~C~~C~~~I~~~---~v~a~~~----------~~H~~CF~C~~C~~~L--~~~~f-~~~g~~yC~~cy~~~f~ 73 (79)
T 2cor_A 13 LGKYICQKCHAIIDEQ---PLIFKND----------PYHPDHFNCANCGKEL--TADAR-ELKGELYCLPCHDKMGV 73 (79)
T ss_dssp CCCCBCTTTCCBCCSC---CCCCSSS----------CCCTTTSBCSSSCCBC--CTTCE-EETTEEECHHHHHTTSC
T ss_pred cCCCCCccCCCEecce---EEEECcc----------eeCCCCCEeCCCCCcc--CCCCE-eECCEEeCHHHHHHhCC
Confidence 4678999999999953 3444332 2499999999999955 45566 77899999999987654
No 73
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.46 E-value=1.2e-07 Score=76.00 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=47.5
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccc-hhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCL-ECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~-~C~~sav~ 269 (499)
.+.++|..|+++|...+ .|.+... . ||+.||+|..|++.+. +..|...||++||. .||..+..
T Consensus 7 ~~~~~C~~C~~~I~~~~--~v~a~~~-----~-----~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~ 70 (76)
T 2cu8_A 7 GMASKCPKCDKTVYFAE--KVSSLGK-----D-----WHKFCLKCERCSKTLT--PGGHAEHDGKPFCHKPCYATLFG 70 (76)
T ss_dssp CCCCBCTTTCCBCCTTT--EEEETTE-----E-----EETTTCBCSSSCCBCC--TTSCEEETTEEECTTTHHHHHSC
T ss_pred CCCCCCcCCCCEeECCe--EEEECCe-----E-----eeCCCCCCCCCCCccC--CCceEeECCEEecchHHHHHhcc
Confidence 47899999999999543 4555432 2 3999999999999654 44455678999999 79987654
No 74
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=98.45 E-value=9.2e-08 Score=84.39 Aligned_cols=62 Identities=21% Similarity=0.245 Sum_probs=46.9
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCcccc-CCceeEecCCccccchhhhhh
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESW-NTRYYSLEDGRSLCLECMESA 267 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~-g~~~~~l~dGr~~C~~C~~sa 267 (499)
.+.++|..|+++|.+.. ++.+... .||..||+|..|++.+.. +.. |...||++||..||...
T Consensus 59 ~~~~~C~~C~~~I~~~~--~v~a~~~----------~wH~~CF~C~~C~~~L~~~g~~-f~~~dg~~yC~~cy~~~ 121 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRF--LLYAMDS----------YWHSRCLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRL 121 (123)
T ss_dssp SSCSBBSSSSSBCCSSS--EEEETTE----------EEETTTSBCTTTCCBGGGTTCC-CBCSSSCCBCHHHHHHH
T ss_pred ccCCcCcCCCCCcCCcE--EEEeCCc----------EEcccccCcCcCCCcccccCCc-eEEECCEEeCHHHhhhh
Confidence 46789999999999742 3555432 249999999999996642 344 55778999999999765
No 75
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.44 E-value=9.4e-08 Score=76.45 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=47.4
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
.+.++|..|+++|.+.+ .++.+... . ||..||+|..|++.+..+ .|...||++||..||.....
T Consensus 9 ~~~~~C~~C~~~I~~~~-~~~~a~~~-----~-----~H~~CF~C~~C~~~L~~~--~~~~~~g~~yC~~~y~~~f~ 72 (77)
T 1g47_A 9 LASATCERCKGGFAPAE-KIVNSNGE-----L-----YHEQCFVCAQCFQQFPEG--LFYEFEGRKYCEHDFQMLFA 72 (77)
T ss_dssp CCCCBCSSSCCBCCSTT-TCEEETTE-----E-----ECTTTCCCTTTCCCCGGG--CSEEETTEEECHHHHHHHCC
T ss_pred CCCCCchhcCCccCCCc-eEEEeCcc-----E-----eccccCeECCCCCCCCCC--CeEeECCeEeCHHHHHHHhh
Confidence 46789999999998543 23445432 2 399999999999966433 35577899999999977643
No 76
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=3.1e-07 Score=74.78 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=45.6
Q ss_pred cccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 195 HPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 195 ~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
.++|..|+++|.... .|.+... . ||+.||+|..|++.+ .++| ...||++||..||.....
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~-~---------wH~~CF~C~~C~~~L--~~~~-~~~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ--SLLALDK-Q---------WHVSCFKCQTCSVIL--TGEY-ISKDGVPYCESDYHAQFG 74 (80)
T ss_dssp CSCCTTTCCCCSSSC--CEEETTE-E---------ECTTTCBCSSSCCBC--SSCC-EEETTEEECTTHHHHHTT
T ss_pred CCCCcCcCCeeCCCe--EEEECCc-c---------cccccCCcCcCCCCc--CCCe-EEECCEEECHHHHHHHcC
Confidence 578999999998532 3555432 2 399999999999965 4564 567899999999987754
No 77
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=3e-07 Score=75.07 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=44.6
Q ss_pred cccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeE--ecCCccccchhhhhhcc
Q 010849 195 HPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYS--LEDGRSLCLECMESAIM 269 (499)
Q Consensus 195 ~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~--l~dGr~~C~~C~~sav~ 269 (499)
.++|..|+++|...+ .+.+... .||..||+|..|++.+ ....|. ..||++||..||..+..
T Consensus 15 ~~~C~~C~~~I~~~e--~v~a~~~----------~wH~~CF~C~~C~~~L--~~~~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 15 GDLCALCGEHLYVLE--RLCVNGH----------FFHRSCFRCHTCEATL--WPGGYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp SCBCSSSCCBCCTTT--BCCBTTB----------CCBTTTCBCSSSCCBC--CTTSEECCTTTCCCEETTTCCCCCC
T ss_pred CCCCcccCCCcccce--EEEECCC----------eeCCCcCEEcCCCCCc--CCCceeEeCcCCEEEChHHHHhhhc
Confidence 578999999997543 2333321 2499999999999955 444444 47899999999987655
No 78
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=1.2e-07 Score=76.76 Aligned_cols=61 Identities=16% Similarity=0.330 Sum_probs=46.5
Q ss_pred ccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 194 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 194 f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
..++|..|+++|.+. .|.+... .||..||+|..|++.+. +.-|...|+++||..||..+..
T Consensus 14 ~~~~C~~C~~~I~~~---~~~a~~~----------~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 14 KLPMCDKCGTGIVGV---FVKLRDR----------HRHPECYVCTDCGTNLK--QKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp CCCCCSSSCCCCCSS---CEECSSC----------EECTTTTSCSSSCCCHH--HHCCEESSSCEECHHHHHHHHS
T ss_pred CCCccccCCCCccCc---EEEECcc----------eeCcCcCeeCCCCCCCC--CCCeEeECCEEECHHHHHHHhC
Confidence 368999999999974 4555432 23999999999999653 3335567899999999987754
No 79
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=98.34 E-value=2.3e-07 Score=75.14 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=45.4
Q ss_pred ccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 194 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 194 f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
..++|..|+++|.... .+.+.. +. ||..||+|..|++.+. +..|...||++||..||..+..
T Consensus 6 ~~~~C~~C~~~I~~~~--~~~a~~-----~~-----~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~~cy~~~f~ 67 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAE--EVQCDG-----RS-----FHRCCFLCMVCRKNLD--STTVAIHDAEVYCKSCYGKKYG 67 (81)
T ss_dssp --CBCSSSCCBCSSTT--EEEETT-----EE-----EESSSEECSSSCCEEC--SSCCEEETTEEECSHHHHHHCC
T ss_pred CCCcCcCcCccccCce--eEEeCC-----cc-----cccccCccCCCCCCCC--CCCeEeeCCEEECHHHHHHHhC
Confidence 4689999999997543 455533 22 3999999999999654 3335567899999999987754
No 80
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.33 E-value=3e-07 Score=75.95 Aligned_cols=61 Identities=18% Similarity=0.429 Sum_probs=45.8
Q ss_pred ccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhcc
Q 010849 194 THPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIM 269 (499)
Q Consensus 194 f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~ 269 (499)
..++|..|+++|.+. .|.+... . ||..||+|..|++.+. +..|| ..||++||..||.....
T Consensus 24 ~~~~C~~C~~~I~~~---~~~a~~~-~---------~H~~CF~C~~C~~~L~-~~~~~-~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 24 RMPLCDKCGSGIVGA---VVKARDK-Y---------RHPECFVCADCNLNLK-QKGYF-FVEGELYCETHARARTS 84 (89)
T ss_dssp SCCBCTTTCCBCCSC---CEESSSC-E---------ECTTTCCCSSSCCCTT-TSCCE-EETTEEECHHHHHHHSS
T ss_pred cCCCcccCCCEeccc---EEEECCc-e---------ECccCCEecCCCCCCC-CCCeE-eECCEEECHHHHHHHhC
Confidence 467899999999973 3555432 2 3999999999999654 23444 56899999999987754
No 81
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.30 E-value=3.1e-07 Score=76.23 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=47.8
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccC
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMD 270 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~d 270 (499)
...++|..|+++|.+.+ .|.+.. + .||..||+|..|++.+. +..|...||++||..||..+...
T Consensus 13 ~~~~~C~~C~~~I~~~~--~v~a~~-----~-----~~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~y~~~f~~ 76 (91)
T 2d8y_A 13 PARETCVECQKTVYPME--RLLANQ-----Q-----VFHISCFRCSYCNNKLS--LGTYASLHGRIYCKPHFNQLFKS 76 (91)
T ss_dssp SSSCBCTTTCCBCCTTS--EEECSS-----S-----EEETTTCBCTTTCCBCC--TTTCCCSSSCCCCHHHHHHHSCC
T ss_pred CCCCcCccCCCccCCce--eEEECC-----C-----EECCCCCeeCCCCCCCC--CCCcEeECCEEECHHHHHHHhCC
Confidence 35789999999998743 344432 2 24999999999999654 33355778999999999887653
No 82
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=98.27 E-value=4.5e-07 Score=72.56 Aligned_cols=60 Identities=17% Similarity=0.372 Sum_probs=44.7
Q ss_pred ccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccc-hhhhhhcc
Q 010849 196 PKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCL-ECMESAIM 269 (499)
Q Consensus 196 pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~-~C~~sav~ 269 (499)
|+|..|+++|.... .|.+.. +. ||..||+|..|++++. +..|...||++||. .||.....
T Consensus 1 p~C~~C~~~I~~~~--~v~a~~-----~~-----~H~~CF~C~~C~~~L~--~~~~~~~~g~~yC~~~cy~~~f~ 61 (76)
T 1iml_A 1 PKCPKCDKEVYFAE--RVTSLG-----KD-----WHRPCLKCEKCGKTLT--SGGHAEHEGKPYCNHPCYSAMFG 61 (76)
T ss_dssp CBCTTTSSBCCGGG--EEEETT-----EE-----EETTTCBCTTTCCBCC--TTTEEEETTEEEETTTHHHHHSS
T ss_pred CcCCCCCCEEECce--EEEECC-----cc-----ccCCCCCccccCccCC--CCceECcCCeEeeCHHHHHHHhC
Confidence 68999999998532 354432 22 3999999999999654 33355678999999 69987755
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.25 E-value=2.8e-07 Score=80.68 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=49.4
Q ss_pred hccccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccC
Q 010849 193 LTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMD 270 (499)
Q Consensus 193 ~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~d 270 (499)
++.++|..|+++|.+.. ++.+... . ||+.||+|..|++++...+..|...||++||..||......
T Consensus 3 ~~~~~C~~C~~~I~~~~--~~~a~~~-~---------wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~ 68 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRF--LLYAMDS-Y---------WHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN 68 (122)
T ss_dssp SCCCCBSSSSSCCCSSC--CEEETTE-E---------ECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC
T ss_pred CCCCCCcccCCEeCCcE--EEEECCc-e---------eHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC
Confidence 46799999999999753 3555432 2 39999999999996541123455788999999999887654
No 84
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=98.22 E-value=6.1e-07 Score=77.62 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=47.6
Q ss_pred cccccccCCccCCCCcceEEeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhhccCC
Q 010849 195 HPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDT 271 (499)
Q Consensus 195 ~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt 271 (499)
.++|..|+++|.+.. .+.+... .||+.||+|..|++++...+..|...||++||..||.......
T Consensus 3 ~~~C~~C~~~I~~~~--~~~a~~~----------~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRY--FLKAIDQ----------YWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CBCBSSSCSCBCSSE--EEECSSS----------EECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred CCCCcCCCCeeCCcE--EEEECch----------hHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 478999999998642 4555332 2499999999999966421233557789999999998876643
No 85
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=96.78 E-value=0.00031 Score=47.20 Aligned_cols=29 Identities=21% Similarity=0.630 Sum_probs=26.7
Q ss_pred CCCCCCCCCccCCCceEeecCccccCCCc
Q 010849 135 YKVCGGCNCDIGYGNYLGCMGTYFHPNCF 163 (499)
Q Consensus 135 ~~~C~~C~k~I~~g~~l~algk~wHp~CF 163 (499)
...|+.|++.+...+.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35899999999888999999999999998
No 86
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=75.61 E-value=4.6 Score=45.29 Aligned_cols=41 Identities=20% Similarity=0.403 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHh-CCC-CCChhhhhhHHHHHHHHHhhc
Q 010849 378 TGAILAHELMHGWLRLK-GYR-NLNPEVEEGICQVLSYMWLES 418 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l~-g~~-~l~~~veEG~Cq~~a~~wl~~ 418 (499)
...++|||+.|-|.--. ... --+..+-|||..++++++++.
T Consensus 259 ~~~viaHElaHqWfGnlVT~~~W~dlWLnEGfA~y~~~~~~~~ 301 (780)
T 1z5h_A 259 SANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDT 301 (780)
T ss_dssp HHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccccccHHHHHHHHHHHHHH
Confidence 45899999999996311 000 125788999999999998875
No 87
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=70.66 E-value=6.9 Score=44.77 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhcc
Q 010849 378 TGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLESE 419 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l~-g~~~-l~~~veEG~Cq~~a~~wl~~~ 419 (499)
...++|||+.|-|.-=. .... =+..+-|||..++.++|.+..
T Consensus 295 i~~vIAHElAHQWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 338 (889)
T 3ebh_A 295 ILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEM 338 (889)
T ss_dssp HHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCeeeecccccceeeHHHHHHHHHHHHHHh
Confidence 46799999999995311 0011 146789999999988887653
No 88
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=68.71 E-value=11 Score=43.07 Aligned_cols=36 Identities=31% Similarity=0.607 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-------ChhhhhhHHHHHHHHHhhc
Q 010849 378 TGAILAHELMHGWLRLKGYRNL-------NPEVEEGICQVLSYMWLES 418 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l~g~~~l-------~~~veEG~Cq~~a~~wl~~ 418 (499)
...|+|||++|-|. .|| +..+-|||..+++++|++.
T Consensus 316 ~~~viaHElAHqWF-----GnlVT~~~W~dlWLnEGFAty~e~~~~~~ 358 (909)
T 4fke_A 316 VVTVIAHELAHQWF-----GNLVTLAWWNDLWLNEGFASYVEYLGADH 358 (909)
T ss_dssp HHHHHHHHHHTTTB-----TTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh-----cCeecccccCcceeehHHHHHHHHHHHHh
Confidence 45789999999995 343 5678999999999999875
No 89
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=67.85 E-value=2.5 Score=46.24 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010849 379 GAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 418 (499)
Q Consensus 379 g~ilAHE~mHa~l~l~-g~~~-l~~~veEG~Cq~~a~~wl~~ 418 (499)
..++|||+.|-|.--. .... -+..+-|||..+++++|++.
T Consensus 296 ~~viaHElAHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 337 (632)
T 2xq0_A 296 IDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGA 337 (632)
T ss_dssp THHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCCcchhhHHHHHHHHHHHHHHHH
Confidence 4799999999996421 0011 25678999999999999885
No 90
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=66.37 E-value=4.5 Score=34.00 Aligned_cols=94 Identities=18% Similarity=0.336 Sum_probs=59.3
Q ss_pred cccCCCCCCCCCC------ceEeeCCcccchhhhhhhc--cccccccCCccCCCCcceEEeeccCccccccCCCCcCCCC
Q 010849 163 FRCRSCGYPITEH------EFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYCPSHEHDHT 234 (499)
Q Consensus 163 F~C~~C~~~L~~~------~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YCp~H~H~~C 234 (499)
+.|..|...+.+. .....=|..||..|..+.. ...|..|.+.+.... .... +. ...-
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~--l~~l----~i---------~~~~ 72 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR--YHPI----YI---------GSGT 72 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC--EEEC----BC---------SSSS
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc--cccc----cc---------CCCC
Confidence 5677777666432 1445578899999997753 568999999988753 1111 11 2344
Q ss_pred cccCCCCCcccc----CCceeEecCCccccchhhhhhccCC
Q 010849 235 SRCCSCERLESW----NTRYYSLEDGRSLCLECMESAIMDT 271 (499)
Q Consensus 235 F~C~~C~r~~~~----g~~~~~l~dGr~~C~~C~~sav~dt 271 (499)
..|..|...+.. +.....+.=|..+|..|........
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~ 113 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 113 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC
Confidence 678888764432 1122455668889999987665433
No 91
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=66.30 E-value=0.92 Score=35.72 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=28.0
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhcccccccccccccccH
Q 010849 235 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVER 303 (499)
Q Consensus 235 F~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~g~~m~~~~~~p~~lv~~ 303 (499)
.+|-.|+..+. +...+|.++|..| +...+|..+||++|++.
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~E 49 (68)
T 2hf1_A 9 LVCPLCKGPLV-----FDKSKDELICKGD-----------------------RLAFPIKDGIPMMLESE 49 (68)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCGGG
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC-----------------------CcEecCCCCeeeeChhh
Confidence 45666766332 3344678888887 34567889999999973
No 92
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=65.54 E-value=0.6 Score=36.70 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=28.1
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010849 235 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 302 (499)
Q Consensus 235 F~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~g~~m~~~~~~p~~lv~ 302 (499)
.+|-.|+..+. +...+|.++|..| +...+|..+||++|++
T Consensus 11 L~CP~ck~~L~-----~~~~~g~LvC~~c-----------------------~~~YPI~dGIPvmL~~ 50 (67)
T 2jny_A 11 LACPKDKGPLR-----YLESEQLLVNERL-----------------------NLAYRIDDGIPVLLID 50 (67)
T ss_dssp CBCTTTCCBCE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCSS
T ss_pred hCCCCCCCcCe-----EeCCCCEEEcCCC-----------------------CccccCCCCEeeeChh
Confidence 45777776332 3345678888887 3456789999999986
No 93
>2d3g_P Ubiquitin interacting motif from hepatocyte growth factor-regulated tyrosine kinase...; protein-protein complex, UIM and ubiquitin; 1.70A {Bos taurus}
Probab=65.25 E-value=2.3 Score=27.07 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHhcchhhhcCcC
Q 010849 76 REKEELDHAIALSLAEDLKRPN 97 (499)
Q Consensus 76 ~e~edid~ai~~sL~Ee~kk~~ 97 (499)
+|.||+.-||++|++|.+.+.+
T Consensus 2 ~EeEEl~LAlAlS~sEae~~~~ 23 (26)
T 2d3g_P 2 QEEEELQLALALSQSEAEEKXX 23 (26)
T ss_pred chHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999887654
No 94
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=64.17 E-value=1.2 Score=35.07 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=28.2
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010849 235 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 302 (499)
Q Consensus 235 F~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~g~~m~~~~~~p~~lv~ 302 (499)
.+|-.|+..+. +....|.++|..| +...+|..+||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 9 LVCPVTKGRLE-----YHQDKQELWSRQA-----------------------KLAYPIKDGIPYMLEN 48 (68)
T ss_dssp CBCSSSCCBCE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCTT
T ss_pred eECCCCCCcCe-----EeCCCCEEEcCCC-----------------------CcEecCCCCeeeeChh
Confidence 56777776332 3344578888887 3456788999999997
No 95
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=63.76 E-value=3 Score=45.33 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHh-CCC-CCChhhhhhHHHHHHHHHhhc
Q 010849 379 GAILAHELMHGWLRLK-GYR-NLNPEVEEGICQVLSYMWLES 418 (499)
Q Consensus 379 g~ilAHE~mHa~l~l~-g~~-~l~~~veEG~Cq~~a~~wl~~ 418 (499)
..++|||+.|-|.--. ... --+..+-||+..+++++|++.
T Consensus 288 ~~viaHElAHqWfGnlVT~~~W~d~WLnEGfAty~e~~~~~~ 329 (608)
T 3u9w_A 288 SNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGR 329 (608)
T ss_dssp THHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcCcCccccccchhHHHhHHHHHHHHHHHH
Confidence 3689999999995321 001 115678899999999988764
No 96
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=61.90 E-value=3 Score=45.30 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010849 379 GAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 418 (499)
Q Consensus 379 g~ilAHE~mHa~l~l~-g~~~-l~~~veEG~Cq~~a~~wl~~ 418 (499)
..++|||+.|-|.--. .... -+..+-|||..+++++|++.
T Consensus 295 ~~viaHElaHqWfGnlVT~~~W~dlWLnEGfAtY~e~~~~~~ 336 (605)
T 3cia_A 295 VNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEA 336 (605)
T ss_dssp THHHHHHHHHTTBTTTEEESSTTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCcchHhHHHHHHHHHHHHHHHHH
Confidence 3799999999996432 1111 26789999999999999886
No 97
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=61.54 E-value=3.6 Score=27.01 Aligned_cols=27 Identities=30% Similarity=0.579 Sum_probs=19.4
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhh
Q 010849 164 RCRSCGYPITEHEFSLSGKDPYHKSCF 190 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~YC~~CY 190 (499)
+|..|++.+-..+-...+|+.|++.||
T Consensus 5 ~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp BCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred cCCccCCEEecceeEEECCeEecccCC
Confidence 577888887655555567888888775
No 98
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.89 E-value=4.4 Score=33.99 Aligned_cols=19 Identities=37% Similarity=0.307 Sum_probs=15.7
Q ss_pred CchhHHHHHHHHHHHHHHH
Q 010849 373 LPRLLTGAILAHELMHGWL 391 (499)
Q Consensus 373 LPrl~~g~ilAHE~mHa~l 391 (499)
|...-..+|||||+.|.-.
T Consensus 78 l~~~El~aVlaHElgH~~~ 96 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIAN 96 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHC
Confidence 4666789999999999754
No 99
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=59.90 E-value=8.4 Score=29.59 Aligned_cols=47 Identities=19% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCC
Q 010849 160 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPT 207 (499)
Q Consensus 160 p~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 207 (499)
++-|.|..|...+.+ .....-|..||..|..+.+ ...|..|++.+..
T Consensus 6 ~~~~~C~IC~~~~~~-Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 345788888887765 4455688999999987755 4568888888765
No 100
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=59.59 E-value=8.3 Score=44.10 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhcc
Q 010849 378 TGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLESE 419 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l~-g~~~-l~~~veEG~Cq~~a~~wl~~~ 419 (499)
...++|||+.|-|.--. .... -+..+-|||..++.++|++..
T Consensus 312 i~~vIAHElAHqWFGNlVT~~~W~dlWLnEGFAtY~e~~~~~~~ 355 (891)
T 3b34_A 312 IERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL 355 (891)
T ss_dssp HHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcccchhhceehHHHHHHHHHHHHHHH
Confidence 45899999999994211 0011 145799999999998888754
No 101
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=58.74 E-value=3.7 Score=44.83 Aligned_cols=43 Identities=19% Similarity=0.228 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHH--h--C-----C--CC--CChhhhhhHHHHHHHHHhhcc
Q 010849 377 LTGAILAHELMHGWLRL--K--G-----Y--RN--LNPEVEEGICQVLSYMWLESE 419 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l~l--~--g-----~--~~--l~~~veEG~Cq~~a~~wl~~~ 419 (499)
-+.+++|||+.|.|.-- . . | ++ -...+-||+-++++.+|+.+.
T Consensus 266 ~~~~liaHE~~H~W~g~~i~p~~~~~~d~~~~~~~~~lWl~EG~t~Y~~~l~~~r~ 321 (597)
T 4fgm_A 266 TFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTS 321 (597)
T ss_dssp HHHHHHHHHHHHTTBTTTBCBGGGSSCCCSSCCCCSTHHHHTHHHHHHHHHHHHHT
T ss_pred chhhhHhhhhheeecccccccccccccccccccccccchhhhhHHHHHHHHHHHHc
Confidence 45789999999999542 2 1 1 11 257889999999999999753
No 102
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=58.31 E-value=5.1 Score=45.73 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHh-CCC-CCChhhhhhHHHHHHHHHhhcc
Q 010849 377 LTGAILAHELMHGWLRLK-GYR-NLNPEVEEGICQVLSYMWLESE 419 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l~l~-g~~-~l~~~veEG~Cq~~a~~wl~~~ 419 (499)
....++|||+.|-|.--. ... -=+..+-|||..+++++|++..
T Consensus 301 ~~~~viaHElAHqWFGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 345 (897)
T 2xdt_A 301 GITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345 (897)
T ss_dssp HHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEeccCCcchhhhhHHHHHHHHHHHHHHh
Confidence 356899999999996321 000 1156889999999999998753
No 103
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.93 E-value=9.6 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.443 Sum_probs=30.5
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhcc-----ccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH-----PKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~-----pkC~~C~~~I~~~ 208 (499)
+.|..|...+.. .....=+..||..|..+.+. .+|..|.+.|...
T Consensus 21 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CBCTTTCSBCSS-EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CEeccCCcccCC-eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 556666666554 33345678899999887653 3788888887653
No 104
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.57 E-value=6.3 Score=29.40 Aligned_cols=45 Identities=22% Similarity=0.618 Sum_probs=30.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 208 (499)
+.|..|...+.+. ....=+..||..|..+.+ ..+|..|.+.|..+
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 16 YKCEKCHLVLCSP-KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp EECTTTCCEESSC-CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCCCCCChHhcCe-eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 5566666655432 224567889999998765 45799999887653
No 105
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.34 E-value=7.9 Score=29.43 Aligned_cols=45 Identities=16% Similarity=0.406 Sum_probs=31.7
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhc--cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT--HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~-~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 208 (499)
+.|..|...+.+ .... .=+..||..|..+.+ ...|..|.+.|...
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 566666666654 2333 567889999987654 57899999988764
No 106
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=56.11 E-value=8.9 Score=32.18 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=27.2
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhccccccccCCccC
Q 010849 163 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELTHPKCEVCHQYIP 206 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~-~dg~~YC~~CY~~~f~pkC~~C~~~I~ 206 (499)
+.|..|...+.. .... .-|..||..|..+.....|..|...+.
T Consensus 23 ~~C~IC~~~~~~-pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE-PVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS-CBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCChHhhC-ccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCc
Confidence 455555555543 2233 457778888877766677888877764
No 107
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=56.07 E-value=5.1 Score=46.20 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhc
Q 010849 377 LTGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLES 418 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l~l~-g~~~-l~~~veEG~Cq~~a~~wl~~ 418 (499)
....++|||+.|-|.--. .... =+..+-|||..++++++++.
T Consensus 363 ~~~~vIaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~~~~ 406 (967)
T 3se6_A 363 WVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNA 406 (967)
T ss_dssp HHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCccccHHHHHHHHHHHHHHHH
Confidence 356899999999996221 0011 14688999999999999875
No 108
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=54.99 E-value=7 Score=44.49 Aligned_cols=42 Identities=17% Similarity=0.402 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHh-CCCC-CChhhhhhHHHHHHHHHhhcc
Q 010849 378 TGAILAHELMHGWLRLK-GYRN-LNPEVEEGICQVLSYMWLESE 419 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l~-g~~~-l~~~veEG~Cq~~a~~wl~~~ 419 (499)
...++|||+.|-|.--. .... -+..+-|||..++.++|++..
T Consensus 287 i~~vIaHElAHqWfGnlVT~~~W~dlWLnEGfAty~e~~~~~~~ 330 (867)
T 2gtq_A 287 IESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDR 330 (867)
T ss_dssp HHHHHHHHHHTTTBTTTBEESSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEecccccccchHHHHHHHHHHHHHHH
Confidence 45899999999994211 0111 146799999999988887653
No 109
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=51.61 E-value=9.8 Score=35.14 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=18.7
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++-.-+.+..++||||+|.+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGH~l 148 (202)
T 2w15_A 124 GVVRDHSKNNLWVAVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCchhHHHHHHHHHHhhhc
Confidence 5555565545678899999999974
No 110
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=51.35 E-value=5.8 Score=31.26 Aligned_cols=40 Identities=13% Similarity=0.352 Sum_probs=28.3
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010849 235 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 302 (499)
Q Consensus 235 F~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~g~~m~~~~~~p~~lv~ 302 (499)
.+|-.|+..+. +...+|.++|..| +...+|..+||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 9 LVCPVCKGRLE-----FQRAQAELVCNAD-----------------------RLAFPVRDGVPIMLEA 48 (70)
T ss_dssp CBCTTTCCBEE-----EETTTTEEEETTT-----------------------TEEEEEETTEECCCGG
T ss_pred eECCCCCCcCE-----EeCCCCEEEcCCC-----------------------CceecCCCCeeeeChh
Confidence 56777776332 3334578888887 3456788999999996
No 111
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.32 E-value=11 Score=28.96 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=29.4
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--------cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--------HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--------~pkC~~C~~~I~~~ 208 (499)
+.|..|...+.. .....=+..||..|..+.+ ..+|..|...+...
T Consensus 20 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 20 VTCPICLELLTQ-PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCTTTCSCCSS-CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCcccCC-ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 456666665544 2233467788999987643 56788888887653
No 112
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=50.06 E-value=12 Score=32.33 Aligned_cols=28 Identities=18% Similarity=0.547 Sum_probs=17.9
Q ss_pred eCCcccchhhhhhhc--cccccccCCccCC
Q 010849 180 SGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 180 ~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
.-|..||..|..+.+ ...|..|.++|..
T Consensus 70 ~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 70 NCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp TTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 345677888876532 4567777777654
No 113
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=49.91 E-value=11 Score=34.89 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=17.9
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++-.-+.+..++||||+|-+
T Consensus 124 gi~~~~~~~~~~~a~~~AHElGHnl 148 (202)
T 1atl_A 124 GIVQDHSPINLLMGVTMAHELGHNL 148 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcceeeEEEehhhhcccc
Confidence 4444555445667889999999974
No 114
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.55 E-value=13 Score=26.95 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=24.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~ 208 (499)
+.|..|...+.. .....=+..||..|..+ ...+|..|.+.+...
T Consensus 7 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 7 LRCQQCQAEAKC-PKLLPCLHTLCSGCLEA-SGMQCPICQAPWPLG 50 (56)
T ss_dssp SSCSSSCSSCBC-CSCSTTSCCSBTTTCSS-SSSSCSSCCSSSSCC
T ss_pred CCceEeCCccCC-eEEcCCCCcccHHHHcc-CCCCCCcCCcEeecC
Confidence 345555544443 12233456667777555 456788888877654
No 115
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=49.40 E-value=9.1 Score=34.97 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCCCchhhHHHHHHHHHHhCHHHHHHHHHhhCC
Q 010849 464 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGN 496 (499)
Q Consensus 464 ~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~g~ 496 (499)
+||-||++|+.+++.+++ +++.+|++|+....
T Consensus 141 pDPyy~~~Fe~v~~~I~~-~~~~ll~~l~~e~~ 172 (173)
T 4etm_A 141 PDPYYTGNFEEVCQLIKT-GCEQLLASIQKEKQ 172 (173)
T ss_dssp CCHHHHCCHHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 578899999999998875 58888999887543
No 116
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.69 E-value=11 Score=28.90 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=29.6
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--------cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--------HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--------~pkC~~C~~~I~~~ 208 (499)
+.|..|...+... ....=+..||..|..+.+ ...|..|...+...
T Consensus 20 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 20 VTCPICLELLKEP-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TSCTTTCSCCSSC-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CCCcCCChhhCcc-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 5666666666542 334567889999987633 45688888877653
No 117
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=48.64 E-value=12 Score=34.46 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=18.2
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++-.-+.+..++||||+|.+
T Consensus 123 gi~~~~~~~~~~~a~~~AHElGH~l 147 (197)
T 1qua_A 123 GLIQDHSAIPLLMAVTMAHELGHNL 147 (197)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeccCCcchHHHHHHHHHHHHhc
Confidence 5555555445568899999999974
No 118
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=48.44 E-value=16 Score=25.84 Aligned_cols=44 Identities=20% Similarity=0.471 Sum_probs=25.4
Q ss_pred ccCCCCCCCCCC---ceEeeCCcccchhhhhhhc--cccccccCCccCC
Q 010849 164 RCRSCGYPITEH---EFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 164 ~C~~C~~~L~~~---~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
.|..|...+... .....=+..||..|..+.+ ...|..|.+.|.+
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 455555554321 1223356778888876643 3678888877753
No 119
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=48.22 E-value=9.8 Score=38.02 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=58.3
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHHHHHhCC--C----CCC----hhhhhhHHHHHHHHHhhcccCCCCCCCCCCCCCCC
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGWLRLKGY--R----NLN----PEVEEGICQVLSYMWLESEVLPDYRNMPSTSSAST 435 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~l~l~g~--~----~l~----~~veEG~Cq~~a~~wl~~~~~~~~~~~~~~~~~~~ 435 (499)
.|+|=..++..-.-.+|||||.|.+|.-.+- . .++ ....|-.|+.+|...|=-.
T Consensus 84 ~I~LN~~~~~~rqrFTLAHELGHllLh~~~~~~~d~~~~~~~~~~~~~~E~eAN~FAa~LLMP~---------------- 147 (301)
T 3dte_A 84 VILINSQVRPERQRFTLAHEISHALLLGDDDLLSDLHDEYEGDRLEQVIETLCNVGAAALLMPA---------------- 147 (301)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHSCH----------------
T ss_pred EEEEcCCCChhhHHHHHHHHHHHHHhccccccccchhhhccccchhhHHHHHHHHHHHHHhCCH----------------
Confidence 5666677888888999999999999975421 0 111 2345777888877765322
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhhhhcCCCCCchhhHHHHHHHHHHhC--HHHHHHHHHhhCCCC
Q 010849 436 SSSSSKKGGKSEVEKKLGEFFMHQIAHDASPAYGEGFRIANAAVNKYG--LRRTLEHIRLTGNFP 498 (499)
Q Consensus 436 ~~~~~~~g~~~~~e~~l~~~~~~qi~~d~s~vYGdGfR~~~~a~~~~g--l~~~l~~i~~~g~~p 498 (499)
..+.+++... + .....+.+..+.+| ...++..+...|..|
T Consensus 148 --------------~~~~~~~~~~---~------~~~~~I~~LA~~FgVS~eav~~RL~~l~~~p 189 (301)
T 3dte_A 148 --------------ELIDDLLTRF---G------PTGRALAELARRADVSATSALYALAERTAPP 189 (301)
T ss_dssp --------------HHHHHHHHHH---C------SSHHHHHHHHHHHTCCHHHHHHHHHHTCCSC
T ss_pred --------------HHHHHHHHhc---C------CCHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 1222332221 1 11356677777776 667777777777766
No 120
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.94 E-value=13 Score=28.83 Aligned_cols=43 Identities=26% Similarity=0.540 Sum_probs=29.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCccC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIP 206 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~ 206 (499)
+.|..|...+.. .....-+..||..|..+.+ ...|..|.+.+.
T Consensus 16 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN-PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS-EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhcC-eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456666666544 3344567889999987654 467999998876
No 121
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=47.38 E-value=6.2 Score=31.02 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=27.2
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010849 235 SRCCSCERLESWNTRYYSLEDGRSLCLECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 302 (499)
Q Consensus 235 F~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sav~dt~e~qpl~~~i~~f~~g~~m~~~~~~p~~lv~ 302 (499)
.+|-.|+..+. +...+|.++|..| +...+|..+||++|++
T Consensus 9 L~CP~ck~~L~-----~~~~~~~LiC~~c-----------------------g~~YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 9 LACPICKGPLK-----LSADKTELISKGA-----------------------GLAYPIRDGIPVMLES 48 (69)
T ss_dssp CCCTTTCCCCE-----ECTTSSEEEETTT-----------------------TEEEEEETTEECCCGG
T ss_pred eeCCCCCCcCe-----EeCCCCEEEcCCC-----------------------CcEecCcCCeeeeChh
Confidence 45667766332 2234577888887 3456788999999987
No 122
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=47.36 E-value=12 Score=34.53 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=18.1
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++-.-+.+..++||||+|.+
T Consensus 126 gi~~~~~~~~~~~a~~~AHElGH~l 150 (203)
T 1kuf_A 126 AVVKDHSSKVFMVAVTMTHELGHNL 150 (203)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCcchhhHHHHHHHhhhhc
Confidence 4555555444668899999999974
No 123
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=47.18 E-value=12 Score=34.72 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=18.3
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|....+..-+.++.++|||++|-+
T Consensus 121 ~v~~d~~~~~~~~a~~~AHElGH~l 145 (208)
T 4dd8_A 121 AVNQDHSKNPVGVACTMAHEMGHNL 145 (208)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred eEEecCCCChhHHHHHHHHHHHHHc
Confidence 4555556555667889999999974
No 124
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=47.18 E-value=13 Score=34.22 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=17.8
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++-.-+.+..++||||+|.+
T Consensus 121 gi~~~~~~~~~~~a~~~AHElGH~l 145 (197)
T 1bud_A 121 GVIQDHSSVNRLVAITLAHEMAHNL 145 (197)
T ss_dssp EEEECCCSSHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCchhHHHHHHHHHHhhhc
Confidence 4444444434568899999999985
No 125
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=46.99 E-value=11 Score=31.28 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=18.5
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhh
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKEL 193 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~ 193 (499)
|.|..|...+.. .....=|..||..|..+.
T Consensus 16 ~~C~iC~~~~~~-p~~~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 16 CQCGICMEILVE-PVTLPCNHTLCKPCFQST 45 (115)
T ss_dssp HBCTTTCSBCSS-CEECTTSCEECHHHHCCC
T ss_pred CCCccCCcccCc-eeEcCCCCHHhHHHHHHH
Confidence 556666666543 333456777888887653
No 126
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.90 E-value=15 Score=27.70 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=28.9
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCccCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
+.|..|...+.. .....=+..||..|..+.+ ...|..|.+.|..
T Consensus 16 ~~C~IC~~~~~~-~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 16 PECAICLQTCVH-PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CBCSSSSSBCSS-EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCccCCcccCC-CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 455666555543 2334467788999987643 4679999888764
No 127
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=46.33 E-value=12 Score=31.51 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=33.2
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhh---hccccccccCCccCC
Q 010849 164 RCRSCGYPITEHEFSLSGKDPYHKSCFKE---LTHPKCEVCHQYIPT 207 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~YC~~CY~~---~f~pkC~~C~~~I~~ 207 (499)
.|..|+.|+....-...=+..+|.+|+.. .-...|..|..+|..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 36778888776544555678999999976 445789999999875
No 128
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.29 E-value=13 Score=30.44 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=24.8
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhhhcc-----ccccccCCccCC
Q 010849 164 RCRSCGYPITEHEFSLSGKDPYHKSCFKELTH-----PKCEVCHQYIPT 207 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~-----pkC~~C~~~I~~ 207 (499)
.|..|...+.. .....=|..||..|..+.+. ..|..|...+..
T Consensus 23 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 23 ECPICLELIKE-PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp SCSSSCCCCSS-CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCcccChhhcC-eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45555554433 12234567888888876543 257777766654
No 129
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=46.26 E-value=13 Score=34.26 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=18.2
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++-.-+.+..++||||+|-+
T Consensus 123 gi~~~~~~~~~~~a~~~AHElGH~l 147 (202)
T 1yp1_A 123 GIIQDFSAIPLLMAVVMAHELGHNL 147 (202)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred ceEeecCCchhHHHHHHHHHHHHhc
Confidence 5555555444568899999999985
No 130
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=46.05 E-value=9.3 Score=34.44 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=26.4
Q ss_pred CCCCchhhHHHHHHHHHHhCHHHHHHHHHhhCC
Q 010849 464 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTGN 496 (499)
Q Consensus 464 ~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~g~ 496 (499)
+||-||++|+.+++.+++ ++..+|+.|+..-+
T Consensus 124 pDPyy~~~F~~v~~~Ie~-~~~~ll~~l~~~~~ 155 (158)
T 3rof_A 124 PDPYYTNNFEGVYDMVLS-SCDNLIDYIVKDAN 155 (158)
T ss_dssp CCHHHHCCHHHHHHHHHH-HHHHHHHHHHHHTT
T ss_pred CCCCCCchHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 688899999999999886 67888888876544
No 131
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=45.77 E-value=18 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=35.5
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCccCC
Q 010849 160 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 160 p~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
++-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|++++..
T Consensus 27 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD-PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS-EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC-CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 677899999888876 5666689999999976643 4567777777654
No 132
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=45.75 E-value=6.6 Score=37.84 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEcCCchh-----HHHHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRL-----LTGAILAHELMHGWLRL 393 (499)
Q Consensus 366 ~Ilvl~gLPrl-----~~g~ilAHE~mHa~l~l 393 (499)
.|+|-.||=.. -..+|||||+.|.-.+-
T Consensus 83 ~I~v~~gLl~~l~~~~ELaaVLaHElgH~~~~H 115 (253)
T 3c37_A 83 RVYVHTGLLKAADNETELAGVLAHEINHAVARH 115 (253)
T ss_dssp EEEEEHHHHHHCSSHHHHHHHHHHHHHHHHTTH
T ss_pred eEEeeHHHHhhCCCHHHHHHHHHHHHHHHHCcC
Confidence 56666666444 47899999999985443
No 133
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=44.86 E-value=41 Score=28.36 Aligned_cols=85 Identities=16% Similarity=0.285 Sum_probs=46.8
Q ss_pred ceEeec--CccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCCCcceEEeeccCccccccC
Q 010849 149 NYLGCM--GTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLIEYRCHPFWAQKYC 226 (499)
Q Consensus 149 ~~l~al--gk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I~~~~~pfWgq~YC 226 (499)
+.|... ++.||+.|..-.. . ..-.+..+.-+|..| ..|.+|++.-.+. .+..= ..|
T Consensus 22 ~Li~C~~C~~~~H~~Cl~~~~-----~-~~~~~~~~~W~C~~C------~~C~~C~~~~~~~---~ll~C-------d~C 79 (114)
T 2kwj_A 22 ELVSCADCGRSGHPTCLQFTL-----N-MTEAVKTYKWQCIEC------KSCILCGTSENDD---QLLFC-------DDC 79 (114)
T ss_dssp CCEECSSSCCEECTTTTTCCH-----H-HHHHHHHTTCCCGGG------CCCTTTTCCTTTT---TEEEC-------SSS
T ss_pred CCeEeCCCCCccchhhCCChh-----h-hhhccCCCccCcccc------CccCcccccCCCC---ceEEc-------CCC
Confidence 455544 6778988863110 0 000123556678777 3689998764332 22221 246
Q ss_pred CCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhh
Q 010849 227 PSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMES 266 (499)
Q Consensus 227 p~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~s 266 (499)
+..||..|.. + ++. .+..|..+|..|...
T Consensus 80 ~~~yH~~Cl~------p-pl~----~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 80 DRGYHMYCLN------P-PVA----EPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCEEETTTSS------S-CCS----SCCSSCCCCHHHHHH
T ss_pred CccccccccC------C-Ccc----CCCCCCeECccccch
Confidence 6667876643 1 222 134578999999654
No 134
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=44.26 E-value=11 Score=30.37 Aligned_cols=44 Identities=16% Similarity=0.454 Sum_probs=27.3
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhc--cccccccCCccCC
Q 010849 163 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~-~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
+.|..|...+.+ .... .-|..||..|..+.+ ...|..|...+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI-AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC-cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 455666555544 2222 467788999886644 4567777777654
No 135
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=44.26 E-value=17 Score=26.86 Aligned_cols=44 Identities=18% Similarity=0.489 Sum_probs=27.1
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCccCC
Q 010849 164 RCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
.|..|...+........=+..||..|..+.+ ...|..|...+..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3455555554322333456778888876532 4679999888764
No 136
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=43.69 E-value=19 Score=29.52 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=34.3
Q ss_pred CCCcccCCCCCCCCCCceEeeCC-cccchhhhhhhc--cccccccCCccCC
Q 010849 160 PNCFRCRSCGYPITEHEFSLSGK-DPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 160 p~CF~C~~C~~~L~~~~F~~~dg-~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
++-|.|..|...+.+ ......| ..||+.|..+.+ ...|..|++++..
T Consensus 20 p~~~~CpI~~~~m~d-PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD-PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC-CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 567889998888766 5556677 999999976643 4567777777654
No 137
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=43.55 E-value=6.7 Score=43.21 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHH
Q 010849 377 LTGAILAHELMHGWL 391 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l 391 (499)
..|+|+||||+|++=
T Consensus 500 ~iG~vigHEi~H~FD 514 (670)
T 3dwb_A 500 GIGVVVGHELTHAFD 514 (670)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhccC
Confidence 568999999999984
No 138
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=43.14 E-value=18 Score=27.65 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=29.2
Q ss_pred cccCCCCCCCCCCceEee-CCcccchhhhhhhcc----ccccccCCccCC
Q 010849 163 FRCRSCGYPITEHEFSLS-GKDPYHKSCFKELTH----PKCEVCHQYIPT 207 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~-dg~~YC~~CY~~~f~----pkC~~C~~~I~~ 207 (499)
+.|..|...+.+ ..... =+..||..|..+.+. ..|..|.+.+..
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 16 LLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GSCSSSCCCCTT-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCcCCChHHhC-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 556666666654 33344 478899999877553 578889887543
No 139
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=42.31 E-value=20 Score=28.49 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=35.0
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCccCC
Q 010849 160 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 160 p~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
++-|.|..|...+.+ ......|..||+.|-.+.+ ...|..|++++..
T Consensus 12 p~~~~CpI~~~~m~d-PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD-PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC-CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 567889998888776 5556689999999876543 4678888777654
No 140
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=42.20 E-value=12 Score=28.68 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=25.0
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---------cccccccCCccCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---------HPKCEVCHQYIPT 207 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---------~pkC~~C~~~I~~ 207 (499)
+.|..|...+.+ .....=+..||..|..+.+ ..+|..|...+..
T Consensus 13 ~~C~IC~~~~~~-p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 13 VTCPICLELLTE-PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CEETTTTEECSS-CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCcCCCcccCC-eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 455555555443 2223456777888876533 3457777766654
No 141
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=41.25 E-value=11 Score=33.42 Aligned_cols=16 Identities=38% Similarity=0.355 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010849 377 LTGAILAHELMHGWLRL 393 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l~l 393 (499)
..-.|++||++|| |-|
T Consensus 107 ~~~~v~~HEiGHa-LGL 122 (160)
T 2jsd_A 107 NLFTVAAHEFGHA-LGL 122 (160)
T ss_dssp EHHHHHHHHHHHH-HTC
T ss_pred hhHHHHHHHhHhh-hcC
Confidence 3468999999999 544
No 142
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=41.16 E-value=18 Score=34.22 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=33.8
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCC
Q 010849 160 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPT 207 (499)
Q Consensus 160 p~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 207 (499)
+.-|.|..|...+.+ ......|..||+.|..+-. ...|..|++++..
T Consensus 206 ~~~~~c~i~~~~~~d-Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSS-EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcC-CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 456778888777765 5556689999999976533 3348888888764
No 143
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.27 E-value=12 Score=27.94 Aligned_cols=44 Identities=16% Similarity=0.470 Sum_probs=29.9
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc--cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT--HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 208 (499)
+.|..|...+.. ....=+..||..|..+.+ ...|..|.+.|...
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 456666666555 444567778888887654 46788888887754
No 144
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=40.02 E-value=16 Score=30.73 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=20.0
Q ss_pred eCCcccchhhhhhhc---cccccccCCccCC
Q 010849 180 SGKDPYHKSCFKELT---HPKCEVCHQYIPT 207 (499)
Q Consensus 180 ~dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 207 (499)
.-|..||..|..+.+ ...|..|.+.+..
T Consensus 69 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346678988886654 2378888888765
No 145
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.78 E-value=42 Score=27.74 Aligned_cols=54 Identities=26% Similarity=0.586 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhh---ccccccccCCcc
Q 010849 131 YPRSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKEL---THPKCEVCHQYI 205 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~---f~pkC~~C~~~I 205 (499)
.....++|.-|+..|. +.+.|..| . .|..|. .|.|+.||.-. -...|..|+..-
T Consensus 12 ~~~~~qiCqiCGD~VG----~~~~Ge~F-V---AC~eC~-------------FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 12 KNLDGQFCEICGDQIG----LTVEGDLF-V---ACNECG-------------FPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SCCSSCBCSSSCCBCC----BCSSSSBC-C---SCSSSC-------------CCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred cccCCCccccccCccc----cCCCCCEE-E---eeeccC-------------ChhhHHHHHHHHhccCccccccCCcc
Confidence 4446689999999884 23344433 1 344443 46699998643 245677776543
No 146
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=39.63 E-value=46 Score=27.67 Aligned_cols=96 Identities=18% Similarity=0.311 Sum_probs=51.2
Q ss_pred CCCCCCCCccCCCceEee--cCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhccccccccCCccCCCCcceE
Q 010849 136 KVCGGCNCDIGYGNYLGC--MGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTHPKCEVCHQYIPTNGAGLI 213 (499)
Q Consensus 136 ~~C~~C~k~I~~g~~l~a--lgk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~pkC~~C~~~I~~~~~g~I 213 (499)
..|..|+..=.....|.. =++.||+.|..=.. .+ +..+.-+|..|. .|.+|++.-... .++
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~--~~-------~~~~~W~C~~C~------~C~~C~~~~~~~--~ll 70 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV--TP-------LKRAGWQCPECK------VCQNCKQSGEDS--KML 70 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC--CT-------TTSTTCCCTTTC------CCTTTCCCSCCT--TEE
T ss_pred CCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc--cc-------ccccCccCCcCC------cccccCccCCCC--Cee
Confidence 457777664211222433 34678988875332 11 124566787773 688888764432 122
Q ss_pred EeeccCccccccCCCCcCCCCcccCCCCCccccCCceeEecCCccccchhhhhh
Q 010849 214 EYRCHPFWAQKYCPSHEHDHTSRCCSCERLESWNTRYYSLEDGRSLCLECMESA 267 (499)
Q Consensus 214 ~~~~~pfWgq~YCp~H~H~~CF~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~sa 267 (499)
.- ..|+.-||..|..= ++. .+.++.++|..|....
T Consensus 71 ~C--------d~C~~~yH~~Cl~p-------pl~----~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 71 VC--------DTCDKGYHTFCLQP-------VMK----SVPTNGWKCKNCRICI 105 (111)
T ss_dssp EC--------SSSCCEEEGGGSSS-------CCS----SCCSSCCCCHHHHCCS
T ss_pred EC--------CCCCcHHhHHhcCC-------ccc----cCCCCCcCCcCCcCcC
Confidence 11 23555567665431 111 1234689999996543
No 147
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=39.52 E-value=27 Score=26.76 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=27.0
Q ss_pred ccCCCCCCCCCCceEeeCCcc-cchhhhhhhccccccccCCccCC
Q 010849 164 RCRSCGYPITEHEFSLSGKDP-YHKSCFKELTHPKCEVCHQYIPT 207 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 207 (499)
.|..|...+.+ ..+..=+.. +|..|..+. .+|..|.+.|..
T Consensus 26 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 26 LCKICMDRNIA-IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp BCTTTSSSBCC-EEEETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC-EEEcCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 34445444433 233345666 888888775 889999998875
No 148
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=39.45 E-value=17 Score=29.84 Aligned_cols=45 Identities=16% Similarity=0.445 Sum_probs=29.9
Q ss_pred CcccCCCCCCCCCCceEe-eCCcccchhhhhhhc--cccccccCCccCC
Q 010849 162 CFRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 162 CF~C~~C~~~L~~~~F~~-~dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
-+.|..|...+.+ .... .-|..||..|..+.+ ...|..|...+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3567777777655 3444 678889999987643 3567777766654
No 149
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=39.06 E-value=8.6 Score=42.75 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHH
Q 010849 377 LTGAILAHELMHGWL 391 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l 391 (499)
..|+|+||||+|++=
T Consensus 522 ~iG~vIgHEi~HgFD 536 (699)
T 3zuk_A 522 GIGAVIGHEIGHGFD 536 (699)
T ss_dssp THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhh
Confidence 479999999999984
No 150
>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase, hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4 NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A* 2c6n_A* 2c6f_A*
Probab=38.91 E-value=24 Score=38.85 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC--------ChhhhhhHHHHHHHH
Q 010849 380 AILAHELMHGWLRLKGYRNL--------NPEVEEGICQVLSYM 414 (499)
Q Consensus 380 ~ilAHE~mHa~l~l~g~~~l--------~~~veEG~Cq~~a~~ 414 (499)
.++-|||+|+...+. |..+ +|-.+|.||.++|..
T Consensus 357 ~t~hHEmGH~qy~~~-y~~~P~~~r~~anpgfhEAige~~slS 398 (629)
T 3nxq_A 357 STVHHEMGHIQYYLQ-YKDLPVSLRRGANPGFHEAIGDVLALS 398 (629)
T ss_dssp HHHHHHHHHHHHHHH-STTSCGGGCSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhcCCccccCCCCchHHHHHHHHHHHH
Confidence 578899999888876 3333 577899999998753
No 151
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.88 E-value=19 Score=27.89 Aligned_cols=46 Identities=20% Similarity=0.442 Sum_probs=29.7
Q ss_pred cccCCCCCCCCCC---ceEeeCCcccchhhhhhhcc-----ccccccCCccCCC
Q 010849 163 FRCRSCGYPITEH---EFSLSGKDPYHKSCFKELTH-----PKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~---~F~~~dg~~YC~~CY~~~f~-----pkC~~C~~~I~~~ 208 (499)
+.|..|...+... .....=+..||..|..+.+. .+|..|.+.+...
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4555665555432 22334678889999877542 5799998887653
No 152
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=38.55 E-value=19 Score=37.43 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|..-+|---+.+..++||||.|-+
T Consensus 125 gi~~d~~~~~~~~a~t~AHElGHnl 149 (419)
T 2dw0_A 125 GIIQDYSEINLVVAVIMAHEMGHNL 149 (419)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcchhhhhhHHHHHHHHc
Confidence 5555566555778899999999975
No 153
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=38.55 E-value=15 Score=32.68 Aligned_cols=43 Identities=12% Similarity=0.382 Sum_probs=26.3
Q ss_pred cccCCCCCCCCCCceEe-eCCcccchhhhhhhc---cccccccCCccC
Q 010849 163 FRCRSCGYPITEHEFSL-SGKDPYHKSCFKELT---HPKCEVCHQYIP 206 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~-~dg~~YC~~CY~~~f---~pkC~~C~~~I~ 206 (499)
+.|..|...+.. .... .-+..||..|..+.+ ...|..|...|.
T Consensus 55 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKN-TMTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSS-EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcccChHhhC-cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 455666555554 2222 467888999987754 345777766664
No 154
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=38.52 E-value=8.4 Score=42.53 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHH
Q 010849 377 LTGAILAHELMHGWL 391 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l 391 (499)
..|+|+||||+|++-
T Consensus 523 ~iG~vigHEi~H~FD 537 (696)
T 1r1h_A 523 GIGMVIGHEITHGFD 537 (696)
T ss_dssp THHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHhh
Confidence 489999999999974
No 155
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=37.68 E-value=14 Score=35.35 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=14.9
Q ss_pred cCC--chhHHHHHHHHHHHHHH
Q 010849 371 YGL--PRLLTGAILAHELMHGW 390 (499)
Q Consensus 371 ~gL--Prl~~g~ilAHE~mHa~ 390 (499)
||- |...+..++||||+|-+
T Consensus 173 ~g~~~~~~~~a~~~AHElGHnl 194 (257)
T 2ddf_A 173 YGKTILTKEADLVTTHELGHNF 194 (257)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccccceeeeeeeeehhhhc
Confidence 663 33347889999999975
No 156
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=37.60 E-value=9.6 Score=35.79 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=19.0
Q ss_pred ccCCCCCCCCCCceEeeCCcccchhhhhh
Q 010849 164 RCRSCGYPITEHEFSLSGKDPYHKSCFKE 192 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~YC~~CY~~ 192 (499)
.|..|+.......-...+++++|..|+.+
T Consensus 174 ~C~~CGE~~~~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 174 RCDVCGEYTYEADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp ECTTTCCEEEGGGCEEETTEEECHHHHHC
T ss_pred ECCCCCCchhhcceeeeCCcEEChhhhcc
Confidence 34444444444455567899999999865
No 157
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=37.04 E-value=19 Score=37.48 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=18.2
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|...++---+.+..++||||.|-+
T Consensus 134 gi~~d~~~~~~~~a~t~AHElGHnl 158 (427)
T 2ero_A 134 GIVQDHSKIHHLVAIAMAHEMGHNL 158 (427)
T ss_dssp EEEECCBSSHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCchhHHHHHHHHHHHHhc
Confidence 4544454345678899999999976
No 158
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.08 E-value=11 Score=36.26 Aligned_cols=47 Identities=30% Similarity=0.783 Sum_probs=30.9
Q ss_pred CCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc----cccccccCCccCCC
Q 010849 135 YKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT----HPKCEVCHQYIPTN 208 (499)
Q Consensus 135 ~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f----~pkC~~C~~~I~~~ 208 (499)
...|..|+..|..| .+|..|+ ..+|..|+.+.+ .++|..|+...+..
T Consensus 180 i~~C~iC~~iv~~g--------------~~C~~C~-------------~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQG--------------QSCETCG-------------IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSC--------------EECSSSC-------------CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCC--------------cccCccC-------------hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 67899999988643 3454443 334556665543 46899999887664
No 159
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=35.37 E-value=17 Score=34.55 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHh-CC
Q 010849 376 LLTGAILAHELMHGWLRLK-GY 396 (499)
Q Consensus 376 l~~g~ilAHE~mHa~l~l~-g~ 396 (499)
.++.+++.||++|+|..-. |.
T Consensus 46 ~l~~~v~~HElgH~~~A~~~G~ 67 (224)
T 3b4r_A 46 LLFVSVVLHELGHSYVAKKYGV 67 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3577889999999999765 54
No 160
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=35.32 E-value=35 Score=28.28 Aligned_cols=70 Identities=19% Similarity=0.410 Sum_probs=47.5
Q ss_pred CCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCC------ceEeeCCcccchhhhhhh--ccccccccCCccCC
Q 010849 136 KVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEH------EFSLSGKDPYHKSCFKEL--THPKCEVCHQYIPT 207 (499)
Q Consensus 136 ~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~------~F~~~dg~~YC~~CY~~~--f~pkC~~C~~~I~~ 207 (499)
..|..|.+.+........ ....+=+.|..|...+... .....-+..||..|..+. ....|..|...|..
T Consensus 49 ~~CP~Cr~~~~~~~l~~l---~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPI---YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SBCTTTCCBCTTTCEEEC---BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCcccccccc---ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 478899998864444332 2234557788888877542 134456889999998763 35689999998876
Q ss_pred C
Q 010849 208 N 208 (499)
Q Consensus 208 ~ 208 (499)
+
T Consensus 126 ~ 126 (133)
T 4ap4_A 126 K 126 (133)
T ss_dssp G
T ss_pred h
Confidence 4
No 161
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.23 E-value=13 Score=27.35 Aligned_cols=29 Identities=17% Similarity=0.463 Sum_probs=21.2
Q ss_pred EeeCCcccchhhhhhhc--cccccccCCccC
Q 010849 178 SLSGKDPYHKSCFKELT--HPKCEVCHQYIP 206 (499)
Q Consensus 178 ~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~ 206 (499)
...=+..||..|..+.+ ...|..|.+.|.
T Consensus 37 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 37 STECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp ECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred eCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34457888999987643 567888988775
No 162
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=35.07 E-value=22 Score=31.42 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=20.6
Q ss_pred eeCCcccchhhhhhhcc---ccccccCCccCCC
Q 010849 179 LSGKDPYHKSCFKELTH---PKCEVCHQYIPTN 208 (499)
Q Consensus 179 ~~dg~~YC~~CY~~~f~---pkC~~C~~~I~~~ 208 (499)
..-+..||..|..+.+. ..|..|...|...
T Consensus 94 ~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 94 TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34567788888876542 3688888887653
No 163
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.06 E-value=21 Score=26.31 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=31.0
Q ss_pred cccCCCCC-CCCCCc---eEeeCCcccchhhhhhhc---cccccccCCccCCC
Q 010849 163 FRCRSCGY-PITEHE---FSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~-~L~~~~---F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 208 (499)
+.|..|.. .+.+.. ....=|..||..|..+.+ ..+|..|++.+..+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 45666666 443321 234568889999988763 35799999998764
No 164
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=34.56 E-value=30 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.473 Sum_probs=29.9
Q ss_pred cccCCCCCCCCCC--ceEe-eCCcccchhhhhhhc---cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEH--EFSL-SGKDPYHKSCFKELT---HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~--~F~~-~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 208 (499)
+.|..|-.++... .+.. .=|..+|..|+.+.. ...|..|.+++...
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 4566666666421 2211 257788999987764 46799999888764
No 165
>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*
Probab=34.48 E-value=15 Score=32.85 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=10.0
Q ss_pred HHHHHHHHHHH
Q 010849 379 GAILAHELMHG 389 (499)
Q Consensus 379 g~ilAHE~mHa 389 (499)
-.|++||++||
T Consensus 112 ~~va~HEiGHa 122 (159)
T 2ovx_A 112 FLVAAHQFGHA 122 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 47999999998
No 166
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=34.34 E-value=17 Score=35.49 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=15.3
Q ss_pred cCC--chhHHHHHHHHHHHHHH
Q 010849 371 YGL--PRLLTGAILAHELMHGW 390 (499)
Q Consensus 371 ~gL--Prl~~g~ilAHE~mHa~ 390 (499)
||- |...+..++||||+|-+
T Consensus 179 ~g~~~~~~~~a~~~AHElGHnl 200 (288)
T 2i47_A 179 YGKTILTKEADLVTTHELGHNF 200 (288)
T ss_dssp TTEECCHHHHHHHHHHHHHHHT
T ss_pred cCcccchhhHHHHHHHHHHhhc
Confidence 663 44457899999999975
No 167
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=34.29 E-value=25 Score=36.58 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.5
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|..-+|---+.+..++||||.|.+
T Consensus 127 gi~~d~~~~~~~~a~t~AHElGHnl 151 (427)
T 2e3x_A 127 GIVQEQGNRNFKTAVIMAHELSHNL 151 (427)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred EEEEeCCCccceeeeehHHHHHHhh
Confidence 5555566445677899999999964
No 168
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=34.17 E-value=17 Score=28.70 Aligned_cols=43 Identities=21% Similarity=0.497 Sum_probs=28.7
Q ss_pred CcccCCCCCCCCCCceEee-CCcccchhhhhhhc----cccccccCCcc
Q 010849 162 CFRCRSCGYPITEHEFSLS-GKDPYHKSCFKELT----HPKCEVCHQYI 205 (499)
Q Consensus 162 CF~C~~C~~~L~~~~F~~~-dg~~YC~~CY~~~f----~pkC~~C~~~I 205 (499)
-|.|..|...+.+ ..... =|..||..|..+.+ ...|..|.+.+
T Consensus 13 ~~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS-CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC-ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 4677777766654 34444 48889999987654 24677777765
No 169
>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A
Probab=33.86 E-value=15 Score=34.39 Aligned_cols=14 Identities=36% Similarity=0.171 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 010849 378 TGAILAHELMHGWL 391 (499)
Q Consensus 378 ~g~ilAHE~mHa~l 391 (499)
.-.++.||||||-=
T Consensus 87 ~~g~i~HEl~HalG 100 (201)
T 3edh_A 87 KFGIVVHELGHVVG 100 (201)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHhc
Confidence 34799999999953
No 170
>4ger_A Gentlyase metalloprotease; metalloproteinase, tissue disaggregation, thermoly protease, hydrolase; HET: LYS; 1.59A {Paenibacillus polymyxa}
Probab=33.06 E-value=20 Score=35.97 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHHH
Q 010849 374 PRLLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYMW 415 (499)
Q Consensus 374 Prl~~g~ilAHE~mHa~l~l~-g--~~~l~~~veEG~Cq~~a~~w 415 (499)
|-....-|+||||+|+..--. | |.+=+=.+-|+|--+++.+.
T Consensus 125 ~~~~slDVvaHEltHGVt~~ta~L~Y~~qsGaLNEs~SDifG~~v 169 (304)
T 4ger_A 125 AFSGDPDVVGHELTHGVTEYTSNLEYYGESGALNEAFSDVIGNDI 169 (304)
T ss_dssp CGGGSHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccccccccccCCccccCCccchhHHHHHHHHHHh
Confidence 433357899999999999876 2 33335568899999998873
No 171
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=32.82 E-value=17 Score=26.27 Aligned_cols=46 Identities=17% Similarity=0.382 Sum_probs=31.5
Q ss_pred cccCCCCCCCCCC-----c-eEeeCCcccchhhhhhhc--cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEH-----E-FSLSGKDPYHKSCFKELT--HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~-----~-F~~~dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 208 (499)
+.|..|...+... . ....=+..||..|..+.. ...|..|...+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 4566666665431 1 344567889999987643 56899999988764
No 172
>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}
Probab=32.70 E-value=16 Score=34.23 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH
Q 010849 378 TGAILAHELMHGW 390 (499)
Q Consensus 378 ~g~ilAHE~mHa~ 390 (499)
.-.++.||+|||-
T Consensus 93 ~~g~i~HEl~HaL 105 (199)
T 3lqb_A 93 YSGIAQHELNHAL 105 (199)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHh
Confidence 3579999999994
No 173
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=32.64 E-value=22 Score=35.21 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=15.9
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|..-+| +.+..++||||.|-+
T Consensus 134 gv~~d~~---~~~a~t~AHElGHnl 155 (316)
T 2rjp_A 134 AIVEDDG---LQSAFTAAHQLGHVF 155 (316)
T ss_dssp EEEECSS---TTHHHHHHHHHHHHT
T ss_pred ceEecCC---chHHHHHHHHHHhhc
Confidence 4444444 578899999999964
No 174
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=32.39 E-value=13 Score=30.23 Aligned_cols=43 Identities=30% Similarity=0.321 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHhcchhhhcCc--CCCc-------------ccccchHHHHHHhhccc
Q 010849 75 DREKEELDHAIALSLAEDLKRP--NGQR-------------WRSNTDEDYAWALQDSQ 117 (499)
Q Consensus 75 ~~e~edid~ai~~sL~Ee~kk~--~~~~-------------wh~e~ce~c~r~Lq~~l 117 (499)
+.++|||.+||.+||.|-.... .+.. -..++++.+..+|.-+|
T Consensus 9 ~~eDeDLkrAieLSL~Es~~~~~~~~yvp~~~~~~~~~~~~~~edeD~DLKAAIaASL 66 (81)
T 1q0v_A 9 EDEEELIRKAIELSLKESRNSASSEPIVPVVESKNEVKRQEIEEEEDPDLKAAIQESL 66 (81)
T ss_dssp SSHHHHHHHHHHHHHHCCCCCSCCCCCCCCCCCCCCCCCCCCCCCSCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHhHHHHcCCCCCCCCCCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Confidence 5589999999999998854331 1110 01236777877775443
No 175
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=32.34 E-value=20 Score=29.20 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=29.1
Q ss_pred cccCCCCCCCCCCceE-eeCCcccchhhhhhhc--c-ccccccCCccCC
Q 010849 163 FRCRSCGYPITEHEFS-LSGKDPYHKSCFKELT--H-PKCEVCHQYIPT 207 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~-~~dg~~YC~~CY~~~f--~-pkC~~C~~~I~~ 207 (499)
+.|..|...+.. ... ..=|..||..|..+.+ . ..|..|...+..
T Consensus 23 ~~C~IC~~~~~~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCccCCccccC-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 456666666654 233 4467889999987643 2 578888887754
No 176
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.14 E-value=31 Score=26.40 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred eCCcc-cchhhhhhhccccccccCCccCC
Q 010849 180 SGKDP-YHKSCFKELTHPKCEVCHQYIPT 207 (499)
Q Consensus 180 ~dg~~-YC~~CY~~~f~pkC~~C~~~I~~ 207 (499)
.=+.. +|..|..+. .+|..|.++|..
T Consensus 42 pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 42 PCGHLVTCKQCAEAV--DKCPMCYTVITF 68 (75)
T ss_dssp SSCCCCBCHHHHHHC--SBCTTTCCBCCC
T ss_pred cCCCHHHHHHHhhCC--CCCccCCceecC
Confidence 34566 888888653 789999999876
No 177
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.86 E-value=12 Score=28.13 Aligned_cols=39 Identities=28% Similarity=0.666 Sum_probs=25.9
Q ss_pred CcccCCCCCccccCCceeEecCCccccc--hhhhhhccCCCCCCchhhhHHHHHhhccccccccccccccc
Q 010849 234 TSRCCSCERLESWNTRYYSLEDGRSLCL--ECMESAIMDTGDCQPLYHAIRDYYEGMNMKLDQQIPMLLVE 302 (499)
Q Consensus 234 CF~C~~C~r~~~~g~~~~~l~dGr~~C~--~C~~sav~dt~e~qpl~~~i~~f~~g~~m~~~~~~p~~lv~ 302 (499)
=.+|-.|+..+ .+.+|.++|. .| ++..+|..+||++|++
T Consensus 10 iL~CP~c~~~L-------~~~~~~L~C~~~~c-----------------------~~~YPI~dGIPvlL~~ 50 (56)
T 2kpi_A 10 ILACPACHAPL-------EERDAELICTGQDC-----------------------GLAYPVRDGIPVLLVD 50 (56)
T ss_dssp SCCCSSSCSCE-------EEETTEEEECSSSC-----------------------CCEEEEETTEECCCTT
T ss_pred heeCCCCCCcc-------eecCCEEEcCCcCC-----------------------CcEEeeECCEeeeCHH
Confidence 35677777632 2233778887 67 3455788899999885
No 178
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=31.53 E-value=17 Score=29.58 Aligned_cols=33 Identities=21% Similarity=0.511 Sum_probs=26.5
Q ss_pred CCCCCCCCCCccCCCceEeecCccccCCCcccC
Q 010849 134 SYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCR 166 (499)
Q Consensus 134 ~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~ 166 (499)
..-.|.-|.+.+.+..+|.+-...-|.-||.|+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCs 46 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCS 46 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeecccc
Confidence 345688888888888888888888888888876
No 179
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=31.51 E-value=28 Score=32.34 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHH
Q 010849 376 LLTGAILAHELMHGW 390 (499)
Q Consensus 376 l~~g~ilAHE~mHa~ 390 (499)
+.+..++||||+|-+
T Consensus 134 ~~~a~~~AHElGHnl 148 (214)
T 1r55_A 134 IGAAATMAHEIGHSL 148 (214)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhc
Confidence 456899999999965
No 180
>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A
Probab=31.41 E-value=18 Score=32.58 Aligned_cols=15 Identities=47% Similarity=0.545 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010849 378 TGAILAHELMHGWLRL 393 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l 393 (499)
.-.|++||++|| |-|
T Consensus 111 ~~~v~~HEiGHa-LGL 125 (168)
T 1cge_A 111 LHRVAAHELGHS-LGL 125 (168)
T ss_dssp HHHHHHHHHHHH-TTC
T ss_pred hhhhhhhHhHhh-hcC
Confidence 458999999999 444
No 181
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=31.21 E-value=31 Score=28.49 Aligned_cols=45 Identities=16% Similarity=0.346 Sum_probs=32.3
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 208 (499)
+.|..|...+.+ .....-|..||..|..+.+ ...|..|...|...
T Consensus 24 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 24 ISCQICEHILAD-PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp TBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCcHhcC-cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 567777766654 3345678899999987654 46899999988753
No 182
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=31.18 E-value=27 Score=29.13 Aligned_cols=45 Identities=20% Similarity=0.437 Sum_probs=31.8
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCCC
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 208 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 208 (499)
|.|..|...+.. .....-|..||..|..+.+ ...|..|...|...
T Consensus 19 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 19 YECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCcCChhhcC-eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 567777766654 3444567889999987654 24899999988764
No 183
>3dnz_A Thermolysin; hydrolase, metalloproteinase, calcium, metal-binding, metalloprotease, protease, secreted, zinc, zymogen; HET: LYS; 1.20A {Bacillus thermoproteolyticus} PDB: 1kjo_A* 1kjp_A* 1kkk_A* 1kl6_A* 1kr6_A* 1kro_A* 1ks7_A* 1kto_A* 1y3g_E* 2whz_A* 2wi0_A* 1kei_A* 3do0_A* 3do1_A* 3do2_A* 3fb0_A 3fbo_A 3fgd_A* 3flf_A* 3fv4_A* ...
Probab=31.18 E-value=24 Score=35.60 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=30.3
Q ss_pred chhHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010849 374 PRLLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 414 (499)
Q Consensus 374 Prl~~g~ilAHE~mHa~l~l~-g--~~~l~~~veEG~Cq~~a~~ 414 (499)
|-....-|+||||+|+..--. | |.+=+-.+-|++--+++.+
T Consensus 132 ~~~~slDVv~HE~tHgvt~~~agL~y~~esGaLNEs~SDifG~~ 175 (316)
T 3dnz_A 132 PLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTL 175 (316)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccceeeeeccccccccCCCcccCCccchhHHHHHHHHHH
Confidence 433357899999999999876 2 2233456889999999866
No 184
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.83 E-value=40 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.595 Sum_probs=20.1
Q ss_pred CCcccchhhhhhh--ccccccccCCccCC
Q 010849 181 GKDPYHKSCFKEL--THPKCEVCHQYIPT 207 (499)
Q Consensus 181 dg~~YC~~CY~~~--f~pkC~~C~~~I~~ 207 (499)
=+..||..|..+. ....|..|.+.|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4677888888663 35689999988875
No 185
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.78 E-value=36 Score=25.83 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=18.0
Q ss_pred CCcccchhhhhhhc--cccccccCCccCCC
Q 010849 181 GKDPYHKSCFKELT--HPKCEVCHQYIPTN 208 (499)
Q Consensus 181 dg~~YC~~CY~~~f--~pkC~~C~~~I~~~ 208 (499)
=+..||..|..+.+ ...|..|.+.|...
T Consensus 36 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 36 CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34556666665432 45788888887764
No 186
>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A
Probab=30.57 E-value=19 Score=32.26 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010849 378 TGAILAHELMHGWLRL 393 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l 393 (499)
.-.|++||++|| |-|
T Consensus 115 ~~~v~~HEiGHa-LGL 129 (167)
T 2xs4_A 115 LITVAAHEIGHL-LGI 129 (167)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhHHHHHHHh-hcC
Confidence 348999999999 555
No 187
>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...
Probab=30.49 E-value=20 Score=32.26 Aligned_cols=15 Identities=40% Similarity=0.421 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 010849 378 TGAILAHELMHGWLRL 393 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l 393 (499)
.-.|++||++|| |-|
T Consensus 113 ~~~v~~HEiGHa-LGL 127 (173)
T 1hy7_A 113 LFLVAAHEIGHS-LGL 127 (173)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhHHHHHHHh-hcC
Confidence 458999999999 555
No 188
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.36 E-value=20 Score=28.28 Aligned_cols=49 Identities=27% Similarity=0.726 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCccCCCceEeecCccccCCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc----cccccccCCccCCC
Q 010849 133 RSYKVCGGCNCDIGYGNYLGCMGTYFHPNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT----HPKCEVCHQYIPTN 208 (499)
Q Consensus 133 ~~~~~C~~C~k~I~~g~~l~algk~wHp~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f----~pkC~~C~~~I~~~ 208 (499)
.....|+-|...|..+. +|..| +..|+..|..+-+ ...|..|.......
T Consensus 13 ~~i~~C~IC~~~i~~g~--------------~C~~C-------------~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQ--------------SCETC-------------GIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSE--------------ECSSS-------------CCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCC--------------ccCCC-------------CchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 34677999999885332 33333 3344566665433 25699999887754
No 189
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=29.71 E-value=14 Score=32.36 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=33.1
Q ss_pred CcccCCCCCCCCCCceEeeCCcccchhhhhhhcc---ccccccCCccCC
Q 010849 162 CFRCRSCGYPITEHEFSLSGKDPYHKSCFKELTH---PKCEVCHQYIPT 207 (499)
Q Consensus 162 CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f~---pkC~~C~~~I~~ 207 (499)
=|.|..|...+.. .....-|..||..|..+... ..|..|...|..
T Consensus 31 ~~~C~IC~~~~~~-pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 31 KYLCSACRNVLRR-PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCCCCCChhhcC-cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3678888777765 34456788999999987653 589999887643
No 190
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=29.69 E-value=20 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.458 Sum_probs=22.8
Q ss_pred EeeCCcccchhhhhhh--ccccccccCCccCCC
Q 010849 178 SLSGKDPYHKSCFKEL--THPKCEVCHQYIPTN 208 (499)
Q Consensus 178 ~~~dg~~YC~~CY~~~--f~pkC~~C~~~I~~~ 208 (499)
...=+..||..|..+. ....|..|.+.+...
T Consensus 32 ~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 32 STECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp ECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred eCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 3445778899998764 356899999888764
No 191
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=29.63 E-value=26 Score=35.55 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=15.7
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|.--+| +.+..++||||+|.+
T Consensus 134 gv~~d~~---~~~a~~~AHElGHnl 155 (378)
T 2rjq_A 134 AVIEDDG---LHAAFTVAHEIGHLL 155 (378)
T ss_dssp EEEECCS---TTHHHHHHHHHHHHT
T ss_pred ceEcccC---cchhhhhhhhhhhhc
Confidence 3433445 467899999999964
No 192
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=29.47 E-value=33 Score=30.42 Aligned_cols=46 Identities=20% Similarity=0.407 Sum_probs=34.6
Q ss_pred CcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCCC
Q 010849 162 CFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPTN 208 (499)
Q Consensus 162 CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~~ 208 (499)
=|.|..|...+.. .....-|..||..|..+.+ ..+|..|...|..+
T Consensus 18 ~~~C~IC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 18 KYECPICLMALRE-AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCChhhcC-cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 3677888777765 3445678999999998765 34899999988764
No 193
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2
Probab=29.45 E-value=26 Score=34.97 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=30.9
Q ss_pred chhHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010849 374 PRLLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 414 (499)
Q Consensus 374 Prl~~g~ilAHE~mHa~l~l~-g--~~~l~~~veEG~Cq~~a~~ 414 (499)
|-....-|+||||+|+..--. | |.+=+=.+-|++--+++.+
T Consensus 134 ~~~~~lDVv~HE~tHGVt~~~agl~y~~eSGaLnEs~SDifg~~ 177 (301)
T 1bqb_A 134 NLSGANDVVAHEITHGVTQQTANLEYKDQSGALNESFSDVFGYF 177 (301)
T ss_dssp CGGGCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CcccccceeeeecccceecccCCCcccCCcCchhHHHHHHHhHh
Confidence 333467899999999998765 3 2223567889999999987
No 194
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=28.89 E-value=26 Score=32.56 Aligned_cols=15 Identities=33% Similarity=0.319 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHH
Q 010849 376 LLTGAILAHELMHGW 390 (499)
Q Consensus 376 l~~g~ilAHE~mHa~ 390 (499)
+.+..++||||+|-+
T Consensus 139 ~~~a~~~AHElGHnl 153 (217)
T 3b8z_A 139 LHAAFTVAHEIGHLL 153 (217)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred cchhhhhHhhhhhhc
Confidence 356789999999964
No 195
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=28.24 E-value=28 Score=37.04 Aligned_cols=22 Identities=36% Similarity=0.224 Sum_probs=18.9
Q ss_pred cCCchhHHHHHHHHHHHHHHHH
Q 010849 371 YGLPRLLTGAILAHELMHGWLR 392 (499)
Q Consensus 371 ~gLPrl~~g~ilAHE~mHa~l~ 392 (499)
.||...-..+|||||+.|.-.+
T Consensus 322 ~~l~~~El~aVlaHElgH~~~~ 343 (482)
T 4aw6_A 322 QGCKNEEVLAVLGHELGHWKLG 343 (482)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHcc
Confidence 4789999999999999997544
No 196
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A*
Probab=28.04 E-value=45 Score=29.78 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=23.6
Q ss_pred CCCCchh--hHHHHHHHHHHhCHHHHHHHHHhhCC
Q 010849 464 ASPAYGE--GFRIANAAVNKYGLRRTLEHIRLTGN 496 (499)
Q Consensus 464 ~s~vYGd--GfR~~~~a~~~~gl~~~l~~i~~~g~ 496 (499)
+||.||+ +||.+++.+++ ++..+|+.|+..+.
T Consensus 126 ~DPy~~~~~~f~~~~~~I~~-~~~~ll~~l~~~~~ 159 (161)
T 3jvi_A 126 PDPYYGGEKGFHRVIDILED-ACENLIIKLEEGKL 159 (161)
T ss_dssp CCCC--CHHHHHHHHHHHHH-HHHHHHHHHHHSSC
T ss_pred cCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhccC
Confidence 5788887 89999998876 57888888876543
No 197
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=27.80 E-value=29 Score=33.91 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 010849 376 LLTGAILAHELMHGW 390 (499)
Q Consensus 376 l~~g~ilAHE~mHa~ 390 (499)
+.+..++||||+|-+
T Consensus 141 ~~~a~t~AHElGHnl 155 (300)
T 2v4b_A 141 LQAAFTTAHELGHVF 155 (300)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred ccceehhhhhhhhhc
Confidence 457899999999964
No 198
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.74 E-value=42 Score=23.69 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=17.7
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhh
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKEL 193 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~ 193 (499)
+.|..|...+.+. ....=+..||..|..+.
T Consensus 16 ~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 16 ASCSVCLEYLKEP-VIIECGHNFCKACITRW 45 (58)
T ss_dssp CBCSSSCCBCSSC-CCCSSCCCCCHHHHHHH
T ss_pred CCCccCCcccCcc-EeCCCCCccCHHHHHHH
Confidence 4455555555432 22345677888887764
No 199
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=27.73 E-value=33 Score=31.57 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=33.7
Q ss_pred CCCcccCCCCCCCCCCceEeeCCcccchhhhhhhc---cccccccCCccCC
Q 010849 160 PNCFRCRSCGYPITEHEFSLSGKDPYHKSCFKELT---HPKCEVCHQYIPT 207 (499)
Q Consensus 160 p~CF~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f---~pkC~~C~~~I~~ 207 (499)
|.-|.|..|...+.+ ......|..||+.|..+.+ +..|..|++++..
T Consensus 104 p~~f~CPI~~elm~D-PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE-PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCC-CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456778877777765 5566789999999876533 3458888887764
No 200
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=27.72 E-value=38 Score=28.58 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHH-----HHHHHhCCCCCChhhhhh
Q 010849 375 RLLTGAILAHELMH-----GWLRLKGYRNLNPEVEEG 406 (499)
Q Consensus 375 rl~~g~ilAHE~mH-----a~l~l~g~~~l~~~veEG 406 (499)
..+...++.|+.-| +|||+.|+..||--|+.|
T Consensus 121 ~~~l~~~~~H~~hHrGQi~~~lR~lG~~~~p~~~~rg 157 (157)
T 3gor_A 121 AQFLQLAMDHEIHHKGQLFVYVRGMGHTDLPLFVKRG 157 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCccccCC
Confidence 34566778899888 699999998888877765
No 201
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=27.55 E-value=19 Score=30.90 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCccCCCc
Q 010849 131 YPRSYKVCGGCNCDIGYGN 149 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~ 149 (499)
-..+...|.+|++.|.-|+
T Consensus 16 AKS~RA~Ck~Ck~kI~Kge 34 (114)
T 1v9x_A 16 AKSSRSSCKTCKSVINKEN 34 (114)
T ss_dssp CSCSCCBCSSSCCBCCSSS
T ss_pred eCCCCCCchhhCCccCCCC
Confidence 3445678999999997554
No 202
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=27.51 E-value=34 Score=25.74 Aligned_cols=29 Identities=14% Similarity=0.261 Sum_probs=23.3
Q ss_pred ccCCCCCCCCCCceEeeCCcccc-hhhhhh
Q 010849 164 RCRSCGYPITEHEFSLSGKDPYH-KSCFKE 192 (499)
Q Consensus 164 ~C~~C~~~L~~~~F~~~dg~~YC-~~CY~~ 192 (499)
.|..|+..+...+-+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPSKAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTTTSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechHHhhhcCCeEEehHHHHcc
Confidence 57788888887788889999999 677654
No 203
>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A
Probab=27.24 E-value=22 Score=34.10 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHH
Q 010849 379 GAILAHELMHGWLRL 393 (499)
Q Consensus 379 g~ilAHE~mHa~l~l 393 (499)
-.++.||+|||-=..
T Consensus 121 ~g~i~HEl~HaLGf~ 135 (235)
T 3lq0_A 121 HGTILHALMHAIGFY 135 (235)
T ss_dssp HHHHHHHHHHHHHBC
T ss_pred cchHHHHHHHHhccc
Confidence 479999999995443
No 204
>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...
Probab=27.16 E-value=25 Score=31.38 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 010849 378 TGAILAHELMHGWLRL 393 (499)
Q Consensus 378 ~g~ilAHE~mHa~l~l 393 (499)
...+++||++|| |-|
T Consensus 112 ~~~v~~HE~GHa-lGl 126 (163)
T 1i76_A 112 LFLVAAHEFGHS-LGL 126 (163)
T ss_dssp HHHHHHHHHHHH-HTB
T ss_pred hhhhhHHHhhhh-hcC
Confidence 468999999999 444
No 205
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=26.93 E-value=54 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.647 Sum_probs=14.3
Q ss_pred CCcccchhhhhhh--ccccccccCCcc
Q 010849 181 GKDPYHKSCFKEL--THPKCEVCHQYI 205 (499)
Q Consensus 181 dg~~YC~~CY~~~--f~pkC~~C~~~I 205 (499)
=+..||..|..+. ....|..|.+.|
T Consensus 27 C~H~f~~~Ci~~w~~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 27 CGHGFHAECVDMWLGSHSTCPLCRLTV 53 (55)
T ss_dssp SCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred CCCcccHHHHHHHHHcCCcCcCCCCEe
Confidence 3455666666542 245577776655
No 206
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=26.86 E-value=14 Score=32.97 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=24.0
Q ss_pred CCCCchhhHHHHHHHHHHhCHHHHHHHHHhhC
Q 010849 464 ASPAYGEGFRIANAAVNKYGLRRTLEHIRLTG 495 (499)
Q Consensus 464 ~s~vYGdGfR~~~~a~~~~gl~~~l~~i~~~g 495 (499)
+||.||++||.+++.+++ ++..+|+.|+.+.
T Consensus 123 ~DP~~~~~f~~v~~~I~~-~~~~ll~~l~~~~ 153 (156)
T 2gi4_A 123 PDPWYSGNFDETYKILSL-ACKNLLVFLSKHH 153 (156)
T ss_dssp CHHHHTSCSHHHHHHHHH-HHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 578888899999998876 4777788887653
No 207
>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11
Probab=26.81 E-value=26 Score=31.29 Aligned_cols=12 Identities=33% Similarity=0.257 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 010849 378 TGAILAHELMHG 389 (499)
Q Consensus 378 ~g~ilAHE~mHa 389 (499)
...|++||++||
T Consensus 113 ~~~v~~HEiGHa 124 (165)
T 1hv5_A 113 LLQVAAHEFGHV 124 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHhHhh
Confidence 468999999998
No 208
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=26.50 E-value=39 Score=34.84 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 010849 376 LLTGAILAHELMHGW 390 (499)
Q Consensus 376 l~~g~ilAHE~mHa~ 390 (499)
+.+..++||||+|-+
T Consensus 137 ~~~a~t~AHElGHnl 151 (397)
T 3k7n_A 137 SLVASTITHELGHNL 151 (397)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred chhhhhHHHHHHHHc
Confidence 567889999999975
No 209
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=26.08 E-value=39 Score=35.09 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=16.4
Q ss_pred EEEEEcCCchhHHHHHHHHHHHHHH
Q 010849 366 AILVLYGLPRLLTGAILAHELMHGW 390 (499)
Q Consensus 366 ~Ilvl~gLPrl~~g~ilAHE~mHa~ 390 (499)
+|.-.++---+.+..++||||+|-+
T Consensus 132 gv~~d~~~~~~~~a~t~AHElGHnl 156 (422)
T 3k7l_A 132 AVVQDYSSRTRMVAITMAHEMGHNL 156 (422)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHHHT
T ss_pred eEEeecCCcchhhhHHHHHHHHHHc
Confidence 3433343223567888999999975
No 210
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A*
Probab=25.85 E-value=31 Score=34.44 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010849 377 LTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 414 (499)
Q Consensus 377 ~~g~ilAHE~mHa~l~l~-g--~~~l~~~veEG~Cq~~a~~ 414 (499)
...-|+||||+|+..--. | |.+=+=.+-|++.-+++-+
T Consensus 133 ~~lDVv~HE~tHGVt~~~agL~y~~eSGaLnEs~SDifG~~ 173 (301)
T 1u4g_A 133 VSLDVAAHEVSHGFTEQNSGLIYRGQSGGMNEAFSDMAGEA 173 (301)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred cccceeeeccccceeccccCccccCCccchhHHHHHHHHHH
Confidence 467999999999998764 3 3333567889999999864
No 211
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=25.49 E-value=53 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.592 Sum_probs=19.3
Q ss_pred CCcccchhhhhhhc--cccccccCCccCC
Q 010849 181 GKDPYHKSCFKELT--HPKCEVCHQYIPT 207 (499)
Q Consensus 181 dg~~YC~~CY~~~f--~pkC~~C~~~I~~ 207 (499)
=+..||..|..+.+ ...|..|...|..
T Consensus 35 C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 35 CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 35677888876532 5679999888765
No 212
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=23.73 E-value=20 Score=33.63 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=21.7
Q ss_pred cccCCCCCccccCCceeEecCCccccchhhhh
Q 010849 235 SRCCSCERLESWNTRYYSLEDGRSLCLECMES 266 (499)
Q Consensus 235 F~C~~C~r~~~~g~~~~~l~dGr~~C~~C~~s 266 (499)
-+|..|+-..+ .....+.||+.+|..|+..
T Consensus 173 ~~C~~CGE~~~--~~~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 173 VRCDVCGEYTY--EADAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EECTTTCCEEE--GGGCEEETTEEECHHHHHC
T ss_pred eECCCCCCchh--hcceeeeCCcEEChhhhcc
Confidence 55999997433 2334566899999999865
No 213
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=23.49 E-value=19 Score=30.71 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCccCCCc
Q 010849 131 YPRSYKVCGGCNCDIGYGN 149 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~ 149 (499)
-..+...|.+|++.|..|.
T Consensus 15 AkS~Ra~Ck~C~~kI~Kg~ 33 (111)
T 3odc_A 15 AKSNRSTCKGCMEKIEKGQ 33 (111)
T ss_dssp CSSSCCBCTTTCCBCCTTC
T ss_pred eecCCccccccCCCccCCc
Confidence 3456688999999997554
No 214
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.07 E-value=14 Score=31.06 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=6.7
Q ss_pred CCCCCCCCcc
Q 010849 136 KVCGGCNCDI 145 (499)
Q Consensus 136 ~~C~~C~k~I 145 (499)
..|+.|+.++
T Consensus 33 ~~CP~Cq~eL 42 (101)
T 2jne_A 33 LHCPQCQHVL 42 (101)
T ss_dssp CBCSSSCSBE
T ss_pred ccCccCCCcc
Confidence 4677777766
No 215
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.94 E-value=41 Score=24.43 Aligned_cols=31 Identities=10% Similarity=0.333 Sum_probs=20.3
Q ss_pred cccCCCCCCCCCCceEeeCCcccchhhhhhhc
Q 010849 163 FRCRSCGYPITEHEFSLSGKDPYHKSCFKELT 194 (499)
Q Consensus 163 F~C~~C~~~L~~~~F~~~dg~~YC~~CY~~~f 194 (499)
+.|..|...+.+ .....=+..||..|..+.+
T Consensus 21 ~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 21 VICPICLDILQK-PVTIDCGHNFCLKCITQIG 51 (63)
T ss_dssp CBCTTTCSBCSS-CEECTTSSEECHHHHHHHH
T ss_pred CCCCcCCchhCC-eEEeCCCCcchHHHHHHHH
Confidence 566666666654 3334567888999887644
No 216
>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*
Probab=22.91 E-value=31 Score=31.01 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH
Q 010849 379 GAILAHELMHG 389 (499)
Q Consensus 379 g~ilAHE~mHa 389 (499)
-.|++||++||
T Consensus 115 ~~~~~HE~gH~ 125 (167)
T 3ayu_A 115 FLVAAHAFGHA 125 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred eeehhhhhHHh
Confidence 48999999998
No 217
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans}
Probab=22.91 E-value=41 Score=34.21 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHHH
Q 010849 376 LLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYMW 415 (499)
Q Consensus 376 l~~g~ilAHE~mHa~l~l~-g--~~~l~~~veEG~Cq~~a~~w 415 (499)
....-|+||||+|+..--. | |.+=+=.+-|++--+++.+.
T Consensus 154 ~~~lDVv~HEltHGVt~~~agL~Y~~eSGaLNEs~SDifG~~v 196 (341)
T 2vqx_A 154 TIAIDVVGHALAHGVTESEAGLIYFQQAGALNESLSDVFGSLV 196 (341)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhcccceecccCCccccCCCcchhhHHHHHHHHHH
Confidence 3456899999999998775 3 33335678899999988754
No 218
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=22.84 E-value=30 Score=33.47 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHH
Q 010849 378 TGAILAHELMHG 389 (499)
Q Consensus 378 ~g~ilAHE~mHa 389 (499)
.-.|++||++||
T Consensus 195 l~~va~HEiGHa 206 (255)
T 1slm_A 195 LFLVAAHEIGHS 206 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhhHHHHHHH
Confidence 458999999998
No 219
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=22.78 E-value=53 Score=35.09 Aligned_cols=16 Identities=31% Similarity=0.312 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 010849 375 RLLTGAILAHELMHGW 390 (499)
Q Consensus 375 rl~~g~ilAHE~mHa~ 390 (499)
.+.++.++||||+|-+
T Consensus 131 ~~~~A~t~AHELGHnL 146 (510)
T 3g5c_A 131 TDLMAVTLAQSLAHNI 146 (510)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHc
Confidence 4678899999999975
No 220
>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...
Probab=22.45 E-value=35 Score=30.32 Aligned_cols=12 Identities=25% Similarity=0.166 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 010849 378 TGAILAHELMHG 389 (499)
Q Consensus 378 ~g~ilAHE~mHa 389 (499)
...|++||++||
T Consensus 108 ~~~~~~HE~GH~ 119 (159)
T 1y93_A 108 LFLTAVHEIGHS 119 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh
Confidence 458999999999
No 221
>3nqx_A MCP-02, secreted metalloprotease MCP02; zinc metalloprotease, alpha/beta protein, hydrolase; 1.70A {Pseudoalteromonas SP} PDB: 3nqy_B 3nqz_B
Probab=22.33 E-value=40 Score=33.77 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHh-C--CCCCChhhhhhHHHHHHHH
Q 010849 376 LLTGAILAHELMHGWLRLK-G--YRNLNPEVEEGICQVLSYM 414 (499)
Q Consensus 376 l~~g~ilAHE~mHa~l~l~-g--~~~l~~~veEG~Cq~~a~~ 414 (499)
+...-|+||||+|+..--. | |..=+-.+-|++--+++-+
T Consensus 133 ~~slDVv~HE~tHGvt~~~a~l~y~~esGaLnEs~SDifg~~ 174 (306)
T 3nqx_A 133 LVSLDVSAHEVSHGFTEQNSGLIYNGKPGGLNEAFSDMAGEA 174 (306)
T ss_dssp SCCHHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhccccccCCCCCccCCCCCcccchHHHHHHHH
Confidence 3467899999999998754 3 2222456889999999865
No 222
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=21.31 E-value=22 Score=30.50 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=14.2
Q ss_pred CCCCCCCCCCCCCccCCCc
Q 010849 131 YPRSYKVCGGCNCDIGYGN 149 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~ 149 (499)
-..+-..|.+|++.|.-|+
T Consensus 11 AkSgRA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 11 AKRGTAGCKKCKEKIVKGV 29 (117)
T ss_dssp CCSSCEECTTSSCEECTTC
T ss_pred eCCCCccchhhCcccCCCC
Confidence 3445678999999997554
No 223
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=21.04 E-value=31 Score=29.01 Aligned_cols=20 Identities=20% Similarity=0.669 Sum_probs=14.5
Q ss_pred hhhhccccccccCCccCCCC
Q 010849 190 FKELTHPKCEVCHQYIPTNG 209 (499)
Q Consensus 190 Y~~~f~pkC~~C~~~I~~~~ 209 (499)
|.+....+|..|++.|.-..
T Consensus 20 yAkS~Ra~Ck~C~~kI~Kge 39 (106)
T 2dmj_A 20 YAKSGRASCKKCSESIPKDS 39 (106)
T ss_dssp ECCSSCCBCSSSCCBCCTTC
T ss_pred EeCCCCCcchhhCCccCCCC
Confidence 44555678999999998653
No 224
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=20.56 E-value=23 Score=30.49 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCccCCCc
Q 010849 131 YPRSYKVCGGCNCDIGYGN 149 (499)
Q Consensus 131 ~~~~~~~C~~C~k~I~~g~ 149 (499)
-..+...|..|++.|..|.
T Consensus 34 AkS~RA~Ck~C~~kI~Kge 52 (116)
T 3od8_A 34 AKSGRASCKKCSESIPKDS 52 (116)
T ss_dssp CSSSCCBCTTTCCBCCTTS
T ss_pred eccCCccCcccCCccCCCC
Confidence 4456688999999997554
No 225
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2, protein ST initiative; 2.50A {Enterococcus faecium}
Probab=20.05 E-value=54 Score=35.17 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHh---CCCCCChhhhhhHHHHHH
Q 010849 379 GAILAHELMHGWLRLK---GYRNLNPEVEEGICQVLS 412 (499)
Q Consensus 379 g~ilAHE~mHa~l~l~---g~~~l~~~veEG~Cq~~a 412 (499)
-.+|+||++||+--+- ..|-+.-.+.-+++++-|
T Consensus 364 v~TL~HE~GHalH~~ls~~~~~~~~~~~~~d~~E~~S 400 (587)
T 2qr4_A 364 LFTLVHEMGHSVHSYFTRSNQPYVYGDYSIFLAEIAS 400 (587)
T ss_dssp HHHHHHHHHHHHHHHHC------------CHHHHHHH
T ss_pred HHHHHHHhchHHHHHHhcCcCCccccCCchHHHHHHH
Confidence 4679999999966332 233333355666666643
Done!