BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010850
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 306 bits (783), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 192/470 (40%), Positives = 271/470 (57%), Gaps = 41/470 (8%)
Query: 31 RFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSK 90
R L F F P Y R PGRVN+IGEHIDY GYSVLPMA+ QD ++A+ +
Sbjct: 38 RLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTY 97
Query: 91 EAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPP 150
L++AN + Y + A + +ID W +YF+CG K E+ L
Sbjct: 98 ----ALQLANTNPLYPDFSTSAN-NIQIDKTKPLWHNYFLCGLKGIQEHFGLSNL----- 147
Query: 151 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSG 210
G++ LVDG +P SGLSSS+A VC + + + G + K E+A++ + E++IGT+ G
Sbjct: 148 TGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGG 207
Query: 211 GMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVV 270
GMDQ+IS +A+ G A+LI+F+P+R TDV+LP+G FV+A+S E KA A S++N RV+
Sbjct: 208 GMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVM 265
Query: 271 ECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEP 328
ECRL A +LA ++ KV L +V+ K G S + + ++ L EP
Sbjct: 266 ECRLAAKLLAKYKSLQ----WDKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEP 314
Query: 329 YTALDIEKI----TEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 384
Y +I + EE T I S ++ DVL +KL+QRA HVYSEA RV FK
Sbjct: 315 YNPEEICRCLGISLEELRTQIL--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKI 368
Query: 385 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 444
+ E+ ++ LG+LMN SH SC +YECSCPEL++LV++CR GA G+RLTGAGWGG
Sbjct: 369 CEE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGG 426
Query: 445 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 494
C V++V F+ N+ + +YQ R D + +FA+KP GA
Sbjct: 427 CTVSMVPADKLPSFLANVHKAYYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 178/511 (34%), Positives = 265/511 (51%), Gaps = 66/511 (12%)
Query: 38 KFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLK 97
KFI + PD AR PGRVNLIGEHIDY +SVLP+AI D + A++ + K +
Sbjct: 55 KFISAYDAKPDFVARSPGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPS--IT 112
Query: 98 IANVSDKYNMCTYPAEPDQE---IDMKHHQWGHYFICGYKAFYEYVK---AKGLDVGPPV 151
+ N K+ + D ID W +YF CG + ++K + P
Sbjct: 113 LINADPKFAQRKFDLPLDGSYVTIDPSVSDWSNYFKCGLHVAHSFLKKLAPERFASAPLA 172
Query: 152 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQ 208
GL + +G VPTGSGLSSS AF+C+ +A++ A G + K+ + ++T E ++G
Sbjct: 173 GLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHYVGVN 232
Query: 209 SGGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAAS 263
+GGMDQA S+ + A ++F P ++ T + P +FV+A++L S K TA +
Sbjct: 233 NGGMDQAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFETAPT 292
Query: 264 NYNNRVVECRLTAIVLAIKLG---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSDP--- 316
NYN RVVE A VLA G + +E S K L D + V +A + S P
Sbjct: 293 NYNLRVVEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNISTPWNG 350
Query: 317 ------------VFAVKEFL--RKEPYTALDI--------EKITEEKLTSIFANSSSSLD 354
+ V+E L +K+ ++ D+ E+ T + LT+ S
Sbjct: 351 DIESGIERLTKMLVLVEESLANKKQGFSVDDVAQSLNCSREEFTRDYLTT----SPVRFQ 406
Query: 355 VLNAAKQYKLHQRAAHVYSEAKRV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 412
VL KL+QRA HVYSE+ RV A K T +S ++ED K+ G LMN+S SC L
Sbjct: 407 VL------KLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQASCDKL 460
Query: 413 YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE----QFYQ 468
YECSCPE++++ ++ +NG+ G+RLTGAGWGGC V LV + I +KE +FY+
Sbjct: 461 YECSCPEIDKICSIALSNGSYGSRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALANEFYK 519
Query: 469 SRIDRGVINNNDLGLYVFASKPSSGAAKFKF 499
+ + I + +L + SKP+ G+ ++
Sbjct: 520 VKYPK--ITDAELENAIIVSKPALGSCLYEL 548
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 224 bits (572), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 165/506 (32%), Positives = 246/506 (48%), Gaps = 62/506 (12%)
Query: 39 FIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKI 98
F Q + PD AR PGRVNLIGEHIDY +SVLP+AI D + A++ D K + +
Sbjct: 15 FFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPS--ITL 72
Query: 99 ANVSDKYNMCTYPAEPD---QEIDMKHHQWGHYFICGYKAFYEYVK---AKGLDVGPPVG 152
N K+ + D ID +W +YF CG + Y+K + + P VG
Sbjct: 73 TNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVG 132
Query: 153 LDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQS 209
I +PTG GLSS AF C++ +A + A ++ KK++ ++T E ++G +
Sbjct: 133 AQIFCQSDIPTGGGLSS--AFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNN 190
Query: 210 GGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASN 264
GGMDQA S+ + A ++F P ++ T + P +FV+A++L +S K TA +N
Sbjct: 191 GGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTN 250
Query: 265 YNNRVVECRLTAIVLAIKLGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS-- 313
YN RV+E + A LA + + P + ++ A+ + NG
Sbjct: 251 YNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIG 310
Query: 314 ------------SDPVFAVKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLN 357
+ F+ K+ F E TAL+ E+ T + LT+ VL
Sbjct: 311 TGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL- 365
Query: 358 AAKQYKLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYEC 415
KL+QRA HVYSE+ RV A K S+ ++ED G LMN+S SC LYEC
Sbjct: 366 -----KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYEC 420
Query: 416 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRID 472
SC E ++ ++ NG+ G+RLTGAGWGGC + LV + Q L E+FY R
Sbjct: 421 SCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYP 480
Query: 473 RGVINNNDLGLYVFASKPSSGAAKFK 498
+ + +L + SKP+ G ++
Sbjct: 481 D--LTDEELKDAIIVSKPALGTCLYE 504
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 224 bits (571), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 165/506 (32%), Positives = 246/506 (48%), Gaps = 62/506 (12%)
Query: 39 FIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKI 98
F Q + PD AR PGRVNLIGEHIDY +SVLP+AI D + A++ D K + +
Sbjct: 30 FFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPS--ITL 87
Query: 99 ANVSDKYNMCTYPAEPD---QEIDMKHHQWGHYFICGYKAFYEYVK---AKGLDVGPPVG 152
N K+ + D ID +W +YF CG + Y+K + + P VG
Sbjct: 88 TNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVG 147
Query: 153 LDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQS 209
I +PTG GLSS AF C++ +A + A ++ KK++ ++T E ++G +
Sbjct: 148 AQIFCQSDIPTGGGLSS--AFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNN 205
Query: 210 GGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAITAASN 264
GGMDQA S+ + A ++F P ++ T + P +FV+A++L +S K TA +N
Sbjct: 206 GGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTN 265
Query: 265 YNNRVVECRLTAIVLAIKLGMK-PQEAISKVKTLSDVEGLCVAFACK--------NGS-- 313
YN RV+E + A LA + + P + ++ A+ + NG
Sbjct: 266 YNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIG 325
Query: 314 ------------SDPVFAVKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSLDVLN 357
+ F+ K+ F E TAL+ E+ T + LT+ VL
Sbjct: 326 TGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRFQVL- 380
Query: 358 AAKQYKLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYEC 415
KL+QRA HVYSE+ RV A K S+ ++ED G LMN+S SC LYEC
Sbjct: 381 -----KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYEC 435
Query: 416 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS---QFILNLKEQFYQSRID 472
SC E ++ ++ NG+ G+RLTGAGWGGC + LV + Q L E+FY R
Sbjct: 436 SCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYP 495
Query: 473 RGVINNNDLGLYVFASKPSSGAAKFK 498
+ + +L + SKP+ G ++
Sbjct: 496 D--LTDEELKDAIIVSKPALGTCLYE 519
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 184/435 (42%), Gaps = 93/435 (21%)
Query: 35 LNSKFIQVFAQPPDV-YARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAE 93
L KF +VF +V Y PGR+NLIGEH DY G V P +I T R + K
Sbjct: 34 LTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDK--- 90
Query: 94 KVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ-WGHYFICGYKAFYEYVKAKGLDVGPPVG 152
K+ S+ + E++ K + W +Y K +K G ++ G
Sbjct: 91 ---KVKLYSENFPKLGVIEFDLDEVEKKDGELWSNYV----KGMIVMLKGAGYEIDK--G 141
Query: 153 LDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGG 211
++L+ G +PT SGLSSS + V L F + VP+ E+ QL + E +IG SG
Sbjct: 142 FELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGI 201
Query: 212 MDQ-AISIMAKSGFAEL-----IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNY 265
+DQ AI GF E+ +D N ++ V + +V + + +A+T S Y
Sbjct: 202 LDQFAI------GFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKP-RALT-ESKY 253
Query: 266 NNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLR 325
N R E R EA+ +++T D++ L L
Sbjct: 254 NERFAETR---------------EALKRMQTRLDIQSLGE------------------LS 280
Query: 326 KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH-AFKDT 384
E + A + + I +E L +RA H E R A K
Sbjct: 281 NEEFDA-NTDLIGDETLI----------------------KRARHAVYENNRTKIAQKAF 317
Query: 385 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGWG 443
V+ NL+ K G+L+N SH S YE + EL+ L + G LGAR+TGAG+G
Sbjct: 318 VAGNLT------KFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFG 371
Query: 444 GCVVALVKESIDSQF 458
GC +ALV S F
Sbjct: 372 GCAIALVAHDNVSAF 386
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 100/392 (25%), Positives = 152/392 (38%), Gaps = 86/392 (21%)
Query: 39 FIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTI-VAIRKHDSKEAEKVLK 97
F + F P++ PGRVNLIGEH DY VLP A+ T+ V + D + +L
Sbjct: 27 FREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPXALELXTVLVGSPRKDGLVS--LLT 84
Query: 98 IANVSDKYNMCTYPAEPDQE-IDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDIL 156
+ +D+ +P Q ++ +W +Y K +Y A P G +
Sbjct: 85 TSEGADEPQRLQFPLPTAQRSLEPGTPRWANYV----KGVIQYYPA-----APLPGFSAV 135
Query: 157 VDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA 215
V +VP G GLSSS + ++ L AQ+ + E F G G DQ
Sbjct: 136 VVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGXPCGIXDQF 195
Query: 216 ISIMAKSGFAELIDFNPIRTTDVQL--PAGGTFVVAHSLAESLKAITAASNYNNRVVECR 273
IS+ + G A LID + T+ V L P + ++ SL A+S Y R +C
Sbjct: 196 ISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSL----ASSEYPVRRRQCE 251
Query: 274 LTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALD 333
A L +E++ +V+ L ++E A ++ + KE +
Sbjct: 252 EVARALG-------KESLREVQ-LEELE-----------------AARDLVSKEGF---- 282
Query: 334 IEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEED 393
+RA HV E +R ++ L D
Sbjct: 283 --------------------------------RRARHVVGEIRRT----AQAAAALRRGD 306
Query: 394 KLKKLGDLMNDSHHSCSVLYECSCPELEELVN 425
+ G L +SH S YE SCPEL++LV
Sbjct: 307 -YRAFGRLXVESHRSLRDDYEVSCPELDQLVE 337
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 22/221 (9%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMC 108
+ + PGRVNLIGEH DY V+PMAI T + KH E +L + ++
Sbjct: 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKH----GEVILYSEHFGEERKFS 57
Query: 109 TYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLS 168
K + W Y K + +K +VG G+ V G +P G+GLS
Sbjct: 58 LNDLR-------KENSWIDYV----KGIFWVLKESDYEVG---GIKGRVSGNLPLGAGLS 103
Query: 169 SSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKSGFAEL 227
SS +F L + +++ L + E +F+G G +DQ + + G
Sbjct: 104 SSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIF 163
Query: 228 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNR 268
+D + + + P + +V ++ ++ A+S Y R
Sbjct: 164 LDTHTLDYEYIPFPKDVSILVFYT---GVRRELASSEYAER 201
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 337 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEEDKL 395
I EE L + SS + +K LH++ ++ E RV +D + +E +
Sbjct: 204 IAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDAL-----KEGNV 258
Query: 396 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 450
+++G ++ +H + YE SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 EEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALV 313
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 343 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 396
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 397 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 453
+LG LMN +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 335 EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEED 393
++I EE L + SS + + K LH++ +++ E RV +D + +E
Sbjct: 204 KRIAEESLRILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDAL-----KEG 258
Query: 394 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 450
++K+G ++ +H + Y SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 DIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALV 315
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 92/223 (41%), Gaps = 26/223 (11%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMC 108
+ + PGRVNLIGEH DY V P AI TI+ K+D K+ S+ +N
Sbjct: 4 ITVKSPGRVNLIGEHTDYTYGYVXPXAIDLYTIITAEKYD--------KVQLYSEHFN-- 53
Query: 109 TYPAEPDQEID--MKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSG 166
E +D K W Y K + +G +G GL + G +P G+G
Sbjct: 54 ---EEKTFTLDNLTKEGSWIDYV----KGVLWVLIQEGYKIG---GLKGKITGDLPLGAG 103
Query: 167 LSSSTAFVCSSTVALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 225
LSSS +F L + + + P K+ +F+G G +DQ + K
Sbjct: 104 LSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNV 163
Query: 226 ELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNR 268
+D ++ + P + +V ++ +K A+S Y R
Sbjct: 164 IFLDTQTLQYEYIPFPKDVSVLVFYT---GVKRELASSEYAER 203
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 343 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 396
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKXKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 397 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 453
+LG L N +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLXNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE 113
P +V L GEH GY + MAI + + I+ +++E E +L N++D
Sbjct: 8 PSKVILFGEHAVVYGYRAISMAIDLTSTIEIK--ETQEDEIIL---NLNDLNKSLGLNLN 62
Query: 114 PDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAF 173
+ I+ + Y +C K +Y L++ P G I + +P GL SS +
Sbjct: 63 EIKNINPNNFGDFKYCLCAIKNTLDY-----LNIEPKTGFKINISSKIPISCGLGSSASI 117
Query: 174 VCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA 215
+ A+ + E+ EIA+L E+ I ++ D +
Sbjct: 118 TIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTS 159
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 363 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 415
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 416 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 450
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 255 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 288
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE 113
P +V L GEH GY + MAI + + I+ +++E E +L N++D
Sbjct: 11 PSKVILFGEHAVVYGYRAISMAIDLTSTIEIK--ETQEDEIIL---NLNDLNKSLGLNLN 65
Query: 114 PDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAF 173
+ I+ + Y +C K +Y L++ P G I + +P GL SS +
Sbjct: 66 EIKNINPNNFGDFKYCLCAIKNTLDY-----LNIEPKTGFKINISSKIPISCGLGSSASI 120
Query: 174 VCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA 215
+ A+ + E+ EIA+L E+ I ++ D +
Sbjct: 121 TIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTS 162
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 363 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 415
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 200 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 257
Query: 416 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 450
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 258 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 291
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 386 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 445
+S++ E K + L D+ N+ H L S ++E+L+ + + NGA+ +LTGAG GG
Sbjct: 217 ASDVIEHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGS 275
Query: 446 VVALVKE 452
++ L K+
Sbjct: 276 MLLLAKD 282
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 389 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 448
+S++D + LG +++ +H + S E + LV ++GALGA+++G G GGC++A
Sbjct: 207 ISQKDA-EGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIA 264
Query: 449 LVKESIDSQ 457
LV +Q
Sbjct: 265 LVTNLTHAQ 273
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 30/203 (14%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMC 108
V PG++ L GEH G + + A+ T V +DS + +I
Sbjct: 22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDSITIQS--QIGRTG------ 73
Query: 109 TYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLS 168
+D + H + A E + K + P G+ + VD +P GSGL
Sbjct: 74 ---------LDFEKHPY-------VSAVIEKXR-KSI---PINGVFLTVDSDIPVGSGLG 113
Query: 169 SSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 228
SS A +S AL FG + +EIA+L E E + + D +S G +
Sbjct: 114 SSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFG--GVVTIP 171
Query: 229 DFNPIRTTDVQLPAGGTFVVAHS 251
+ ++T D + G T V + +
Sbjct: 172 ERRKLKTPDCGIVIGDTGVFSST 194
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 80/203 (39%), Gaps = 30/203 (14%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMC 108
V PG++ L GEH G + + A+ T V +DS + +I
Sbjct: 22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDSITIQS--QIGRTG------ 73
Query: 109 TYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLS 168
+D + H + A E + K + P G+ + VD +P GSGL
Sbjct: 74 ---------LDFEKHPY-------VSAVIEKXR-KSI---PINGVFLTVDSDIPVGSGLG 113
Query: 169 SSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 228
SS A +S AL FG + +EIA+L E E + + D +S G +
Sbjct: 114 SSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFG--GVVTIP 171
Query: 229 DFNPIRTTDVQLPAGGTFVVAHS 251
+ ++T D + G T V + +
Sbjct: 172 ERRKLKTPDCGIVIGDTGVFSST 194
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 252 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 301
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 302 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 361
L VA G D V VK RK + + + + E S LD+LN+
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYLEHE----------SFLDILNSLSF 116
Query: 362 YKLHQRAAHVYSEAKRVHAF----KDTVSSNLSEEDKLKK 397
++ + +++ KR+H F +D SN +LKK
Sbjct: 117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKK 156
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian
Mevalonate Kinase And Atp: Insights Into The Reaction
Mechanism And Human Inherited Disease
pdb|2R42|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 395
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 74/205 (36%), Gaps = 48/205 (23%)
Query: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE 113
PG+V L GEH G L +A+ T + +R + + L + +++ T
Sbjct: 11 PGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATL--- 67
Query: 114 PDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLD---VG---------------------- 148
Q +D + G + + K GL VG
Sbjct: 68 --QLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRT 125
Query: 149 -PPVGLDILVDGTVPTGSGLSSSTAF-VCSSTVALMAAFGVEVPKKE------------- 193
P LDI+V +P G+GL SS A+ VC + L A V P K+
Sbjct: 126 LP--SLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLK 183
Query: 194 -IAQLTCECEQFIGTQSGGMDQAIS 217
I + E E+ I G+D ++S
Sbjct: 184 SINKWAYEGERVIHGNPSGVDNSVS 208
>pdb|3BBO|V Chain V, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 198
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 160 TVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ-SGGMDQAISI 218
T P LSSS AF S+ +F ++P K+ AQ++C + + TQ S A++
Sbjct: 4 TAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKK-AQISCISSKKLHTQKSFNFHDAVTP 62
Query: 219 MAKSGF 224
M K F
Sbjct: 63 MNKPSF 68
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 346 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 401
+ N S S + N AK K++ + Y E +R++ K S +ED+L K+ D+
Sbjct: 19 YXNKSDSTTLKNXAKDLKIYVTPINXYKENERLYDLKQKTSLITDDEDRLNKIEDI 74
>pdb|1UEK|A Chain A, Crystal Structure Of 4-(Cytidine
5'-Diphospho)-2c-Methyl-D- Erythritol Kinase
Length = 275
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 133 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 192
Y+A Y++A G P G+ IL++ +P G+GL ++ +AL A + EV
Sbjct: 61 YRAASLYLEAAGQ----PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVDLF 116
Query: 193 EIAQ-LTCECEQFI---GTQSGGMDQAISIMAKSGFAELIDFNPIRTT 236
+A+ L + F+ G ++ G+ + + +A ++ F +R
Sbjct: 117 ALARTLGADVPFFLLGRGAEARGVGERLKPLALPPVPAVVFFPGLRVP 164
>pdb|2W43|A Chain A, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
pdb|2W43|B Chain B, Structure Of L-Haloacid Dehalogenase From S. Tokodaii
Length = 201
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 5 EELPVPTFWSLKAVYGEGLQLEEAERRFDNL----NSKFIQVFAQPPDVYARCPGRVNLI 60
EE+ T + V GE + +E ++ NL ++K+++ ++ +VYA G +N +
Sbjct: 43 EEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEVYALSNGSINEV 102
Query: 61 GEHIDYEG 68
+H++ G
Sbjct: 103 KQHLERNG 110
>pdb|2W11|A Chain A, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
pdb|2W11|B Chain B, Structure Of The L-2-Haloacid Dehalogenase From Sulfolobus
Tokodaii
Length = 206
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 5 EELPVPTFWSLKAVYGEGLQLEEAERRFDNL----NSKFIQVFAQPPDVYARCPGRVNLI 60
EE+ T + V GE + +E ++ NL ++K+++ ++ +VYA G +N +
Sbjct: 48 EEITKITLRYILKVRGEESKFDEELNKWKNLKAYEDTKYLKEISEIAEVYALSNGSINEV 107
Query: 61 GEHIDYEG 68
+H++ G
Sbjct: 108 KQHLERNG 115
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 82 VAIRKHDSKEAEKVLKIANVSDKYNMCT-YPAEPDQEIDMKHHQWGHYFI 130
V +RK E EK K +++ N CT Y EP ++DM + H FI
Sbjct: 4 VVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFI 53
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 375 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALG 434
A+ +H V + S E+KLK LG+ + D++ + C+ EE N+ L
Sbjct: 31 ARLLHKLGSKVIISGSNEEKLKSLGNALKDNY----TIEVCNLANKEECSNLISKTSNLD 86
Query: 435 ARLTGAGWGGCVVA--LVKESIDSQFILNLKEQFYQSR 470
+ AG +A + + D +NLK F +R
Sbjct: 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
>pdb|2R3V|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|B Chain B, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|C Chain C, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|D Chain D, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 396
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 44/203 (21%)
Query: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE 113
PG+V L GEH G L +++ T + ++ H + + + L + +++
Sbjct: 11 PGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKRAWDVARL--- 67
Query: 114 PDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPV---------------------- 151
Q +D + G + + + GL V
Sbjct: 68 --QSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQRA 125
Query: 152 --GLDILVDGTVPTGSGLSSSTAF-VCSSTVALMAAFGVEVPKKE--------------I 194
LDI+V +P G+GL SS A+ VC + L + P K+ I
Sbjct: 126 LPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLELI 185
Query: 195 AQLTCECEQFIGTQSGGMDQAIS 217
+ + E+ I G+D A+S
Sbjct: 186 NKWAFQGERMIHGNPSGVDNAVS 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,611,966
Number of Sequences: 62578
Number of extensions: 596749
Number of successful extensions: 1548
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 46
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)