Query 010850
Match_columns 499
No_of_seqs 188 out of 1472
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 2.6E-83 5.5E-88 677.9 50.3 496 1-499 1-496 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 3.6E-73 7.9E-78 565.8 40.8 379 33-497 7-389 (390)
3 PLN02865 galactokinase 100.0 3.4E-68 7.3E-73 551.2 44.5 393 30-497 10-423 (423)
4 PTZ00290 galactokinase; Provis 100.0 2.7E-67 5.9E-72 549.2 43.5 407 29-498 12-457 (468)
5 PRK05322 galactokinase; Provis 100.0 2.1E-64 4.6E-69 523.4 42.8 381 32-497 3-387 (387)
6 PRK05101 galactokinase; Provis 100.0 4.7E-64 1E-68 520.4 43.1 375 32-496 4-381 (382)
7 TIGR00131 gal_kin galactokinas 100.0 1.8E-62 3.8E-67 510.7 40.6 381 33-496 2-385 (386)
8 PRK00555 galactokinase; Provis 100.0 3E-60 6.5E-65 488.4 39.1 357 48-497 2-362 (363)
9 KOG0631 Galactokinase [Carbohy 100.0 4.3E-61 9.2E-66 486.2 31.2 481 6-499 2-489 (489)
10 PRK03817 galactokinase; Provis 100.0 2.6E-52 5.7E-57 429.4 39.3 348 50-497 2-350 (351)
11 COG1577 ERG12 Mevalonate kinas 100.0 2.8E-44 6.2E-49 356.3 27.5 295 50-470 2-296 (307)
12 PLN02677 mevalonate kinase 100.0 2.2E-43 4.7E-48 363.0 33.0 338 48-497 2-382 (387)
13 TIGR01220 Pmev_kin_Gr_pos phos 100.0 6.3E-43 1.4E-47 359.5 33.6 309 49-464 1-344 (358)
14 TIGR00549 mevalon_kin mevalona 100.0 3.8E-42 8.3E-47 342.2 27.3 272 53-449 1-273 (273)
15 PRK13412 fkp bifunctional fuco 100.0 5.7E-39 1.2E-43 356.2 34.0 302 49-464 610-950 (974)
16 PTZ00298 mevalonate kinase; Pr 100.0 4.7E-39 1E-43 327.8 30.0 300 49-470 11-314 (328)
17 KOG1511 Mevalonate kinase MVK/ 100.0 1.9E-38 4.1E-43 308.6 28.3 332 49-498 5-381 (397)
18 PRK03926 mevalonate kinase; Pr 100.0 5.8E-38 1.3E-42 316.7 32.6 298 49-498 2-300 (302)
19 COG2605 Predicted kinase relat 100.0 7.3E-36 1.6E-40 284.8 28.3 295 49-465 2-313 (333)
20 TIGR01219 Pmev_kin_ERG8 phosph 100.0 1E-27 2.3E-32 249.9 32.7 340 51-470 2-433 (454)
21 PLN02451 homoserine kinase 100.0 1.8E-27 4E-32 244.9 30.1 306 48-498 53-366 (370)
22 COG0083 ThrB Homoserine kinase 100.0 1.2E-26 2.6E-31 228.3 31.1 291 48-497 3-297 (299)
23 PRK00128 ipk 4-diphosphocytidy 100.0 1.4E-26 3E-31 232.0 23.7 263 49-465 3-272 (286)
24 PRK02534 4-diphosphocytidyl-2- 99.9 8.9E-26 1.9E-30 228.8 27.7 299 48-496 3-310 (312)
25 PRK01212 homoserine kinase; Pr 99.9 3.6E-25 7.8E-30 223.4 30.3 296 48-497 3-301 (301)
26 TIGR00191 thrB homoserine kina 99.9 1.1E-24 2.5E-29 219.7 29.2 291 49-496 1-301 (302)
27 PTZ00299 homoserine kinase; Pr 99.9 1.1E-24 2.5E-29 220.7 26.4 294 48-498 7-323 (336)
28 TIGR00154 ispE 4-diphosphocyti 99.9 1.3E-23 2.8E-28 210.8 26.0 171 50-256 3-178 (293)
29 PRK03188 4-diphosphocytidyl-2- 99.9 2.9E-22 6.3E-27 202.1 29.1 288 50-498 2-296 (300)
30 TIGR01920 Shik_kin_archae shik 99.9 1.7E-21 3.6E-26 192.3 28.5 146 70-253 15-164 (261)
31 PRK01123 shikimate kinase; Pro 99.9 6.9E-21 1.5E-25 190.3 29.0 168 55-255 3-176 (282)
32 TIGR00144 beta_RFAP_syn beta-R 99.9 1.9E-19 4.1E-24 182.8 29.4 293 50-497 2-324 (324)
33 PRK14616 4-diphosphocytidyl-2- 99.9 6.6E-20 1.4E-24 183.7 25.1 266 49-468 4-276 (287)
34 PRK14608 4-diphosphocytidyl-2- 99.9 2.2E-19 4.8E-24 180.0 26.0 173 47-256 5-182 (290)
35 PRK14614 4-diphosphocytidyl-2- 99.8 2.6E-19 5.7E-24 178.7 24.6 169 49-256 4-177 (280)
36 PRK14612 4-diphosphocytidyl-2- 99.8 1.5E-19 3.3E-24 180.1 21.6 164 49-256 3-171 (276)
37 PRK14611 4-diphosphocytidyl-2- 99.8 7.1E-19 1.5E-23 175.2 26.1 164 50-256 3-172 (275)
38 PRK14615 4-diphosphocytidyl-2- 99.8 7.6E-19 1.6E-23 176.5 26.0 170 48-257 6-182 (296)
39 PRK14609 4-diphosphocytidyl-2- 99.8 3.3E-19 7.2E-24 176.6 22.6 167 50-256 2-175 (269)
40 PRK14613 4-diphosphocytidyl-2- 99.8 5.8E-18 1.2E-22 170.1 25.7 278 52-468 2-289 (297)
41 PRK00343 ipk 4-diphosphocytidy 99.8 1.4E-17 3E-22 165.3 24.5 163 49-256 7-178 (271)
42 COG1907 Predicted archaeal sug 99.7 4.5E-16 9.7E-21 149.7 20.5 226 151-497 70-311 (312)
43 PRK00650 4-diphosphocytidyl-2- 99.7 2.3E-15 5E-20 149.2 24.0 164 50-254 2-170 (288)
44 PRK14610 4-diphosphocytidyl-2- 99.7 4.8E-15 1.1E-19 148.1 24.7 164 49-254 4-174 (283)
45 COG1947 IspE 4-diphosphocytidy 99.7 9.5E-15 2.1E-19 143.4 22.3 169 48-256 3-177 (289)
46 PF10509 GalKase_gal_bdg: Gala 99.6 1.3E-15 2.8E-20 111.4 5.8 52 36-87 1-52 (52)
47 PRK05905 hypothetical protein; 99.6 3.8E-13 8.2E-18 131.7 20.7 167 50-256 2-177 (258)
48 COG1685 Archaeal shikimate kin 99.6 4.4E-12 9.5E-17 121.3 26.9 163 50-253 4-170 (278)
49 KOG4519 Phosphomevalonate kina 99.5 1.3E-11 2.8E-16 120.3 26.7 387 49-496 3-449 (459)
50 KOG4644 L-fucose kinase [Carbo 99.5 6.6E-12 1.4E-16 128.1 25.7 305 44-462 566-918 (948)
51 COG3890 ERG8 Phosphomevalonate 99.5 2.5E-11 5.5E-16 115.8 26.5 177 50-253 5-202 (337)
52 PF00288 GHMP_kinases_N: GHMP 99.5 8.5E-14 1.8E-18 108.4 8.1 67 154-221 1-67 (67)
53 TIGR01240 mevDPdecarb diphosph 99.4 8.7E-11 1.9E-15 118.3 24.4 217 134-466 70-304 (305)
54 PF08544 GHMP_kinases_C: GHMP 99.4 6.2E-13 1.3E-17 108.2 6.7 82 381-467 1-84 (85)
55 KOG1537 Homoserine kinase [Ami 99.3 1.6E-11 3.4E-16 116.3 13.4 310 46-496 2-352 (355)
56 PRK04181 4-diphosphocytidyl-2- 99.3 7.5E-11 1.6E-15 115.9 16.8 168 50-257 2-179 (257)
57 COG4542 PduX Protein involved 98.9 1.4E-07 3.1E-12 89.7 18.4 54 150-203 81-134 (293)
58 COG1829 Predicted archaeal kin 98.9 1.2E-06 2.7E-11 84.7 24.2 158 49-252 3-170 (283)
59 COG3407 MVD1 Mevalonate pyroph 98.8 8.1E-06 1.7E-10 81.9 27.2 76 134-222 75-151 (329)
60 PLN02407 diphosphomevalonate d 98.8 1.2E-06 2.5E-11 88.6 20.8 60 154-222 105-167 (343)
61 KOG2833 Mevalonate pyrophospha 98.6 2.5E-05 5.3E-10 76.7 25.3 62 152-222 105-166 (395)
62 PF03460 NIR_SIR_ferr: Nitrite 67.8 11 0.00023 28.8 4.5 48 415-464 21-68 (69)
63 PF12098 DUF3574: Protein of u 47.7 23 0.0005 29.9 3.4 31 28-58 73-103 (104)
64 COG2221 DsrA Dissimilatory sul 39.4 37 0.00081 34.3 4.0 48 415-464 42-89 (317)
65 TIGR00162 conserved hypothetic 20.8 3.7E+02 0.008 25.1 7.1 33 171-203 127-159 (188)
66 PF06153 DUF970: Protein of un 20.5 1.9E+02 0.004 24.7 4.5 52 419-470 12-68 (109)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=2.6e-83 Score=677.91 Aligned_cols=496 Identities=74% Similarity=1.191 Sum_probs=427.1
Q ss_pred CCCCCCcCcchhcchhhhhCCchhhHHHHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccce
Q 010850 1 MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDT 80 (499)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~ 80 (499)
|+.|.+.|||+|++|.+||++...++++..|++++...|.+.||.+|+++++|||||+|+|||+||+|++||++||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~F~~~fg~~p~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~ 80 (497)
T PLN02521 1 MAKHEEEPVPVFSSLEPVYGDGSLLEEARLRYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDT 80 (497)
T ss_pred CCCCCCCCcceechhHHhcCCcchhHHHHHHHHHHHHHHHHHHCCCCCEEEECCceEEEeccceeecCCeEEEEEEcCcE
Confidence 77899999999999999999877778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEec
Q 010850 81 IVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGT 160 (499)
Q Consensus 81 ~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~ 160 (499)
++.++++++ ...+++.+.+..+....++++.....+.....|.||+.+++++++..+.+.+...+.+.|+++.|.|+
T Consensus 81 ~v~~~~~~~---~~~i~i~s~~~~~~~~~~~~~~~~~~~~~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~ 157 (497)
T PLN02521 81 IVAIRRAEG---SKKLRIANVNDKYTTCTFPADPDQEVDLANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGT 157 (497)
T ss_pred EEEEEEcCC---CCEEEEEECCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecC
Confidence 999999875 15688877654333234444321111234467999999999999999987765322235999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeec
Q 010850 161 VPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL 240 (499)
Q Consensus 161 iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~ 240 (499)
||+++|||||||++||++.|++.+++.++++++++++|+++|+++|++||+|||+++++|+.|+++++||+++.++++++
T Consensus 158 IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~~ 237 (497)
T PLN02521 158 VPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQL 237 (497)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHH
Q 010850 241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 320 (499)
Q Consensus 241 p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v 320 (499)
|.++.|+|++|++++.|+.+++++||.|+.||+.|+++|+++++++.++....+++|||+.+++..+.+.....++.+.+
T Consensus 238 p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~ 317 (497)
T PLN02521 238 PAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAV 317 (497)
T ss_pred CCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHh
Confidence 99999999999999999999999999999999999999999888765443345789999976554444555556677888
Q ss_pred HHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 010850 321 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGD 400 (499)
Q Consensus 321 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~ 400 (499)
+..+.+.+|+.+++.++++..+++++++..+....+...+++.+++|++|+++|+.||.+++++|+++++.+.++..||+
T Consensus 318 ~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~ 397 (497)
T PLN02521 318 KELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGD 397 (497)
T ss_pred hhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 88888888999999888776666666555544444444667889999999999999999999999986544456999999
Q ss_pred HHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCC
Q 010850 401 LMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND 480 (499)
Q Consensus 401 lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 480 (499)
+|+++|.++|++|+||||++|.|+++|++.|++|+||||||||||+++|++++.++++++.+.+.|+++.+.++.+...+
T Consensus 398 lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGaG~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 477 (497)
T PLN02521 398 LMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEED 477 (497)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCCCCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccC
Confidence 99999999999999999999999999999999999999999999999999998999999999999998764334455556
Q ss_pred CcceEEEeeCCCceeeccC
Q 010850 481 LGLYVFASKPSSGAAKFKF 499 (499)
Q Consensus 481 ~~~~~~~~~p~~Ga~v~~~ 499 (499)
+.+.+|+++|++||++++|
T Consensus 478 ~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 478 LGLYVFASKPSSGAAILKF 496 (497)
T ss_pred CCCcEEEEecCCCceEeec
Confidence 7889999999999999876
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-73 Score=565.81 Aligned_cols=379 Identities=35% Similarity=0.538 Sum_probs=328.6
Q ss_pred HHHHHHHHHHhCC-CCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeec
Q 010850 33 DNLNSKFIQVFAQ-PPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYP 111 (499)
Q Consensus 33 ~~~~~~f~~~f~~-~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 111 (499)
+++.+.|...|+. .|+..++||||++|+|||+||+||+|+++|||.+|++.++++++ ..+++.|.+.++....+.
T Consensus 7 ~~~~~~f~~~f~~~~~~~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d----~~v~l~s~n~~~~~~~~~ 82 (390)
T COG0153 7 EKLQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDD----GKVRLYSANFGNAGDIFF 82 (390)
T ss_pred HHHHHHHHHHhcccCcceEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccC----ceEEEEeCCCccccceee
Confidence 4566677777875 99999999999999999999999999999999999999999999 789999987654444444
Q ss_pred CCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCH
Q 010850 112 AEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPK 191 (499)
Q Consensus 112 l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~ 191 (499)
++..... .+.+.|.||+ ++++..|+..|+.+ .|+++.|.|+||.|+|||||||+.|+++.++.+++++++++
T Consensus 83 ~~~d~~~-~~~~~W~nYv----kgvi~~l~~~g~~~---~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k 154 (390)
T COG0153 83 LLLDIAK-EKIDDWANYV----KGVIKALQKRGYAF---TGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDK 154 (390)
T ss_pred cchhhcc-cccchhhhhH----HHHHHHHHhcCCCc---CCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCH
Confidence 4322111 2348999999 56777788888875 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCC-cEEEEEeCCCcccccccccccchhHH
Q 010850 192 KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRV 269 (499)
Q Consensus 192 ~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~-~~~vl~~s~~~~~~~~~~~~~y~~r~ 269 (499)
.+++++|+++|+ |+|.+||+|||+++.+|..++++++||+++.++++|+|.+ +.++|+||++ |+.+++++||.|+
T Consensus 155 ~~la~i~q~AEn~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr 231 (390)
T COG0153 155 AELAKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERR 231 (390)
T ss_pred HHHHHHHHHHHhhccCCcCchHHHHHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHH
Confidence 999999999996 9999999999999999999999999999999999999975 9999999998 5678999999999
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcC
Q 010850 270 VECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANS 349 (499)
Q Consensus 270 ~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 349 (499)
.||..|++.|++. +++|+|+... .+.+.. +.
T Consensus 232 ~ece~A~~~l~~~-----------~~~L~d~~~~-----------------------------~~~~~~-----~~---- 262 (390)
T COG0153 232 AECEEAAEFLGVS-----------IKSLRDVTDE-----------------------------EFAALQ-----AE---- 262 (390)
T ss_pred HHHHHHHHHHHHh-----------hhhhhhcCHH-----------------------------HHHhhh-----hh----
Confidence 9999999999872 2356655432 111110 00
Q ss_pred CCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHh
Q 010850 350 SSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN 429 (499)
Q Consensus 350 ~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~ 429 (499)
+ .. ++.+++|+.|+++|+.|+.++++||+++ |+.+||+||++||.+||++|+|||||+|+|+++|..
T Consensus 263 ---i----~~-~~~~~rRa~hvv~En~Rvl~a~~Al~~~-----dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~ 329 (390)
T COG0153 263 ---I----EV-DPKIARRARHVVTENQRVLEAAKALRSG-----DLTEFGELMNESHESLRDDYEVTCPELDTLVEIALA 329 (390)
T ss_pred ---c----cc-chHHHHHHHHHHhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 0 00 2346899999999999999999999986 699999999999999999999999999999999975
Q ss_pred -CCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 010850 430 -NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 497 (499)
Q Consensus 430 -~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 497 (499)
.|++|+||||||||||+|+|++++.++++.+++.++|++..+ +++.+|+++|++|++++
T Consensus 330 ~~G~~GaRmTGaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~g---------~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 330 AGGAYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVTG---------LKAAFYVVEASQGAGVC 389 (390)
T ss_pred cCCcccceecCCCCCceEEEEechhhHHHHHHHHHHhHHhhcC---------ccccEEEEeccCCcccc
Confidence 688999999999999999999999999999999999998874 68899999999999875
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=3.4e-68 Score=551.15 Aligned_cols=393 Identities=22% Similarity=0.328 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHhCCCCC--eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCC-
Q 010850 30 RRFDNLNSKFIQVFAQPPD--VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYN- 106 (499)
Q Consensus 30 ~~~~~~~~~f~~~f~~~~~--~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~- 106 (499)
..++++.+.|.+.||.+|. .+++|||||+|+|||+||+||+||+||||+++++.++++++ +.+++.|.+ |+
T Consensus 10 ~~~~~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~----~~i~v~s~~--~~~ 83 (423)
T PLN02865 10 NELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGD----PEVLLRSAQ--FEG 83 (423)
T ss_pred HHHHHHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCC----CEEEEEECC--CCC
Confidence 3457899999999999996 58999999999999999999999999999999999999998 788998764 32
Q ss_pred ceeecCCCC-cc------cccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecC-CCCCCCCchHHHHHHHH
Q 010850 107 MCTYPAEPD-QE------IDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTV-PTGSGLSSSTAFVCSST 178 (499)
Q Consensus 107 ~~~~~l~~~-~~------~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~i-P~g~GLGSSaA~~va~~ 178 (499)
..+|+++.. .. .......|.||++ +++..+.+.|... ..||++.|.+++ |+++|||||||++||++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~Yv~----gv~~~l~~~g~~~--~~G~~~~v~g~vpP~gsGLsSSAAl~va~~ 157 (423)
T PLN02865 84 EVRFRVDEIQHPIANVSSDSKEESNWGDYAR----GAVYALQSRGHAL--SQGITGYISGSEGLDSSGLSSSAAVGVAYL 157 (423)
T ss_pred ceEEeccccccccccccccCCCCCCHHHHHH----HHHHHHHHcCCCC--CCceEEEEECCCCCCCCcccHHHHHHHHHH
Confidence 134444321 00 0124477999994 5666676667642 379999999999 57999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecC-------CCcEEEEEe
Q 010850 179 VALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAH 250 (499)
Q Consensus 179 ~al~~~~~~~l~~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p-------~~~~~vl~~ 250 (499)
.+++.++++++++++++++|+++|+ ++|.+||+|||+++++|..|+++++||+++.++.+++| .++.|++++
T Consensus 158 ~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~ 237 (423)
T PLN02865 158 LALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAF 237 (423)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccccHHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEe
Confidence 9999999999999999999999997 88999999999999999999999999999777777765 368899999
Q ss_pred CCCcccccccc-cccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCC
Q 010850 251 SLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPY 329 (499)
Q Consensus 251 s~~~~~~~~~~-~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 329 (499)
|+++ |.+. ++.||.|+.||+.|+++|++++|+... .++|+++..
T Consensus 238 s~~~---h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~~~~-----~~~Lr~~~~--------------------------- 282 (423)
T PLN02865 238 SGLR---HALTNKPGYNLRVSECQEAARFLLEASGNDEL-----EPLLCNVEP--------------------------- 282 (423)
T ss_pred CCCc---hhhcccchhhHHHHHHHHHHHHHHHhcCCccc-----hhhhhcCCH---------------------------
Confidence 9986 3344 789999999999999999987764221 234554331
Q ss_pred CHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhh
Q 010850 330 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSC 409 (499)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~l 409 (499)
+++.+... ..++.+++|+.|+++|+.||.+++++|+++ |++.||+||+++|.++
T Consensus 283 --~~~~~~~~-------------------~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~-----d~~~~g~lm~~sh~Sl 336 (423)
T PLN02865 283 --EVYEAHKC-------------------KLEAVLARRAEHYFSENMRVIKGVEAWASG-----NLEEFGKLISASGLSS 336 (423)
T ss_pred --HHHHHHHh-------------------hcCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhhhhH
Confidence 11111100 011236899999999999999999999986 7999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHh-CCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe
Q 010850 410 SVLYECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS 488 (499)
Q Consensus 410 r~~~~vs~peld~lv~~a~~-~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (499)
|++|+|||||+|.|++.+++ .|++|+||||||||||+++|++++.++++++++.+.|+++.++ ..+.-+.++.+|++
T Consensus 337 rd~yevS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~--~~~~~~~~~~~~~~ 414 (423)
T PLN02865 337 IENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPE--LASNINGDKPVLIC 414 (423)
T ss_pred HhhccCCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccc--cccccCCCCcEEEE
Confidence 99999999999999999998 5999999999999999999999999999999999999976421 11111356789999
Q ss_pred eCCCceeec
Q 010850 489 KPSSGAAKF 497 (499)
Q Consensus 489 ~p~~Ga~v~ 497 (499)
+|++|++++
T Consensus 415 ~p~~Ga~~~ 423 (423)
T PLN02865 415 EAGDCARVL 423 (423)
T ss_pred ecCCCcccC
Confidence 999999874
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2.7e-67 Score=549.25 Aligned_cols=407 Identities=22% Similarity=0.342 Sum_probs=314.6
Q ss_pred HHHHHHHHHHHHHHhCCCCC------eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCC
Q 010850 29 ERRFDNLNSKFIQVFAQPPD------VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVS 102 (499)
Q Consensus 29 ~~~~~~~~~~f~~~f~~~~~------~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~ 102 (499)
-.++++++..|.+.||.+|+ ++++|||||+|+|||+||+||+||++||++++++.+.++.+. .+..+++.+..
T Consensus 12 ~~~~~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~-~~~~i~~~~~~ 90 (468)
T PTZ00290 12 DSTLSTLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHF-CDHKLRFATET 90 (468)
T ss_pred HHHHHHHHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCC-CCCeEEEEECC
Confidence 35688999999999999994 789999999999999999999999999999999999776220 01568885432
Q ss_pred CCCCceeecCCCCcccccccCCccchHHHHHHHHHHH-HHHcCCCC--CCCCCeEEEEEecCCCCCCCCchHHHHHHHHH
Q 010850 103 DKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEY-VKAKGLDV--GPPVGLDILVDGTVPTGSGLSSSTAFVCSSTV 179 (499)
Q Consensus 103 ~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~-l~~~~~~~--~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~ 179 (499)
. ..|+++... .......|.||++ +++.. +++.|..+ +.+.||++.|.++||+|+|||||||+.||++.
T Consensus 91 ~----~~~~~~~~~-~~~~~~~W~nYv~----gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~ 161 (468)
T PTZ00290 91 D----EHFVLDHLG-GAKHNKAWTTFVR----GAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLN 161 (468)
T ss_pred C----ceeecCccc-ccCCcccHHHHHH----HHHHHHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHH
Confidence 1 234333211 1123467999995 44433 44456531 01369999999999999999999999999999
Q ss_pred HHHHHhCC--------------------CCCHHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEe
Q 010850 180 ALMAAFGV--------------------EVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDV 238 (499)
Q Consensus 180 al~~~~~~--------------------~l~~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i 238 (499)
|++.++++ +.+..+++.+|+++|+ ++|.+||+|||+++++|+.|+++++||++++++++
T Consensus 162 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v 241 (468)
T PTZ00290 162 AINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESH 241 (468)
T ss_pred HHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEe
Confidence 99998632 1234889999999998 89999999999999999999999999999998888
Q ss_pred ecC----CCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccc-cchhhhhhhhhhhccCCC
Q 010850 239 QLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVK-TLSDVEGLCVAFACKNGS 313 (499)
Q Consensus 239 ~~p----~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~-~L~~v~~~~~~~~~~~~~ 313 (499)
+++ .++.|+|+||++++++..+++.+||.|+.||+.|++.|++.. + +.++ +|+++.
T Consensus 242 ~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~-l------~~~~~~Lrd~~------------ 302 (468)
T PTZ00290 242 DMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHR-Y------RGKPFTFSDLV------------ 302 (468)
T ss_pred ccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhcccc-c------cchhhhHHHhh------------
Confidence 875 479999999999887665556699999999999999986531 0 0011 333321
Q ss_pred CCchhHHHHhhhcCCCCHHH-HHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcC--Cc
Q 010850 314 SDPVFAVKEFLRKEPYTALD-IEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN--LS 390 (499)
Q Consensus 314 ~~~~~~v~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~--~~ 390 (499)
....++++++ ..... ..+.+. -++.+++|++|+++|+.||.+++.+|+.. ..
T Consensus 303 ----------~~~~~~~~~~~~~~~~--------~~~~~~-------l~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~ 357 (468)
T PTZ00290 303 ----------RNPKKYTFDGDVVAFM--------ESCKPL-------MTPGEFERGTYNIMEQIRTLEFIKLNDPELPLS 357 (468)
T ss_pred ----------hccccccccccHHHHH--------HHhhhc-------CCHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcc
Confidence 0111222211 00000 000000 02357899999999999999999999621 11
Q ss_pred chHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHH-HhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhc
Q 010850 391 EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 469 (499)
Q Consensus 391 ~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a-~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~ 469 (499)
.++|+..||+||+++|.+||++|+|||||+|.|++.+ ...|++||||||||||||+++|++++.++++++++.+.|.++
T Consensus 358 ~~~~~~~lG~lm~~sh~sL~~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~ 437 (468)
T PTZ00290 358 REERFRKAGEILNAGHQGMRDLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKAR 437 (468)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHh
Confidence 1247999999999999999999999999999999976 457999999999999999999999999999999999999877
Q ss_pred ccCCCcccCCCCcceEEEeeCCCceeecc
Q 010850 470 RIDRGVINNNDLGLYVFASKPSSGAAKFK 498 (499)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 498 (499)
++ ..+.+|.++|++|++++.
T Consensus 438 ~g---------~~~~~~~~~~~~Ga~~~~ 457 (468)
T PTZ00290 438 FG---------VENDVYPVVAGDGAFVVS 457 (468)
T ss_pred hC---------CCCcEEEEecCCCcEEEe
Confidence 63 467899999999999874
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=2.1e-64 Score=523.39 Aligned_cols=381 Identities=31% Similarity=0.479 Sum_probs=320.6
Q ss_pred HHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCC-ceee
Q 010850 32 FDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYN-MCTY 110 (499)
Q Consensus 32 ~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~-~~~~ 110 (499)
++++++.|.+.||.+|..+++|||||+|+|||+||+|+++|++|||+++++.++++++ ..+++.+.+.... ...+
T Consensus 3 ~~~~~~~f~~~fg~~p~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~----~~i~i~s~~~~~~~~~~~ 78 (387)
T PRK05322 3 KEELKKKFAEVFGEEAEDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDD----KKVRLYSANFEDLGIIEF 78 (387)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCC----CEEEEEECCCCCCceEEE
Confidence 4678999999999999999999999999999999999999999999999999999988 7889887642110 1223
Q ss_pred cCCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCC
Q 010850 111 PAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVP 190 (499)
Q Consensus 111 ~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~ 190 (499)
+++.. . ......|.+|+ ++++..++..+... ..|+++.|.|+||+++|||||||++||++.|++.+++.+++
T Consensus 79 ~~~~~-~-~~~~~~w~~y~----~gvi~~l~~~~~~~--~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~ 150 (387)
T PRK05322 79 DLDDL-S-FDKEDDWANYP----KGVLKFLQEAGYKI--DHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLD 150 (387)
T ss_pred ecccc-C-CCCccchHHHH----HHHHHHHHHcCCCC--CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCC
Confidence 33211 1 12346799998 56777777666531 37999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCC-CcEEEEEeCCCcccccccccccchhH
Q 010850 191 KKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNR 268 (499)
Q Consensus 191 ~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~-~~~~vl~~s~~~~~~~~~~~~~y~~r 268 (499)
+++++++|+.+|+ +.|.+||+|||+++++||.++++++++++...+.+++|. ++.|+|+||+++ +.+.++.||.|
T Consensus 151 ~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~lvv~dsg~~---~~~~~~~yn~r 227 (387)
T PRK05322 151 RLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKR---RELADSKYNER 227 (387)
T ss_pred HHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCCCeEEEEEECCCc---cccCcchhhHH
Confidence 9999999999997 789999999999999999999999999988888888764 678999999985 55778999999
Q ss_pred HHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhc
Q 010850 269 VVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFAN 348 (499)
Q Consensus 269 ~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 348 (499)
+.||+.+++.+++++++ ++|+++.. +++..+. +.
T Consensus 228 ~~e~~~a~~~l~~~~~~---------~~l~~~~~-----------------------------~~~~~~~-----~~--- 261 (387)
T PRK05322 228 RAECEKALEELQKKLDI---------KSLGELTE-----------------------------EEFDEYS-----YL--- 261 (387)
T ss_pred HHHHHHHHHHHhhhcCc---------cchhcCCH-----------------------------HHHHHHH-----hh---
Confidence 99999999999887543 23443321 1111110 00
Q ss_pred CCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHH
Q 010850 349 SSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR 428 (499)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~ 428 (499)
-.++.+++|+.|+++|+.|+..++.+|.++ |++.||++|+++|.+|++.|++|+|++|.|++.++
T Consensus 262 ----------~~~~~~~~r~~h~v~e~~r~~~~~~al~~~-----d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~ 326 (387)
T PRK05322 262 ----------IKDETLLKRARHAVTENQRTLKAVKALKAG-----DLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAW 326 (387)
T ss_pred ----------cCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHH
Confidence 001346899999999999999999999986 79999999999999999999999999999999996
Q ss_pred -hCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 010850 429 -NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 497 (499)
Q Consensus 429 -~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 497 (499)
..|++|+||||||+|||+++|++.+..+++.+.+.+.|++.++ .++.+|+++|++|++++
T Consensus 327 ~~~Ga~garlsGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 327 KQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKAYEEKIG---------YAASFYVAEIGDGAREL 387 (387)
T ss_pred hcCCccEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCCcccC
Confidence 5799999999999999999999998999999999999988763 47789999999999874
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=4.7e-64 Score=520.38 Aligned_cols=375 Identities=30% Similarity=0.489 Sum_probs=315.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeec
Q 010850 32 FDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYP 111 (499)
Q Consensus 32 ~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~ 111 (499)
.+++.+.|++.||.+|.++++|||||+|+|||+||+|+++|++|||+++++.++++++ +.+++.+.+.......++
T Consensus 4 ~~~~~~~f~~~fg~~p~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~----~~i~v~s~~~~~~~~~~~ 79 (382)
T PRK05101 4 KQKTQSLFAQQFGYPPTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDD----RIVRVIAADYDNQQDEFS 79 (382)
T ss_pred HHHHHHHHHHHhCCCCCeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCC----CEEEEEECCCCCCceEEe
Confidence 3578999999999999999999999999999999999999999999999999999888 778887754322222344
Q ss_pred CCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCH
Q 010850 112 AEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPK 191 (499)
Q Consensus 112 l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~ 191 (499)
++.... ......|.||+. +++..+...+.. ..|+++.|.|+||+++|||||||++||++.|++.+++.++++
T Consensus 80 ~~~~~~-~~~~~~w~~yv~----~~~~~l~~~~~~---~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~ 151 (382)
T PRK05101 80 LDAPIV-PHPEQQWANYVR----GVVKHLQERNPD---FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSG 151 (382)
T ss_pred cCcccc-cCCCCchHHHHH----HHHHHHHHhCCC---CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCH
Confidence 432111 124567999995 555666654443 369999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHH
Q 010850 192 KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVV 270 (499)
Q Consensus 192 ~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~ 270 (499)
++++++|+++|+ +.|.+||.|||+++++||.++++++++++....++++|.++.|+|++|+++++ +.++.||.|+.
T Consensus 152 ~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~~~~~~~~~~~~vv~~sg~~~~---l~~~~y~~r~~ 228 (382)
T PRK05101 152 AEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINSNVKRG---LVDSEYNTRRQ 228 (382)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCceEEeeCCCCcEEEEEeCCCCcc---ccccchhHHHH
Confidence 999999999997 78999999999999999999999999999888889999899999999999654 56689999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCC
Q 010850 271 ECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSS 350 (499)
Q Consensus 271 e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (499)
||+.|++++... +|+++.. +++.....
T Consensus 229 e~~~A~~~l~~~-------------~l~~~~~-----------------------------~~~~~~~~----------- 255 (382)
T PRK05101 229 QCETAARFFGVK-------------ALRDVTL-----------------------------EQFNAVAA----------- 255 (382)
T ss_pred HHHHHHHHhChH-------------hhhcCCH-----------------------------HHHHHHHh-----------
Confidence 999998877432 2332211 11111000
Q ss_pred CchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhC
Q 010850 351 SSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN 430 (499)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~ 430 (499)
.-.+.+++|+.|+++|+.||.+++++|+++ |++.||+||+++|.+||+.|+|||||+|.|++.|++.
T Consensus 256 --------~l~~~~~~r~~h~i~E~~rv~~a~~al~~~-----d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~ 322 (382)
T PRK05101 256 --------ELDPVVAKRARHVITENARTLEAASALAAG-----DLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAV 322 (382)
T ss_pred --------hCCHHHHHHHHHHhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhc
Confidence 001235789999999999999999999986 7999999999999999988999999999999999996
Q ss_pred -CCc-eeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 010850 431 -GAL-GARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 496 (499)
Q Consensus 431 -Ga~-GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 496 (499)
|++ ||||||||||||+++|++++.++++++++.+.|++++. +++.+|+++|++|+++
T Consensus 323 ~Ga~gGakltGaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~---------~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 323 IGDQGGVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTG---------LKETFYVCKASQGAGQ 381 (382)
T ss_pred cCCcceEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhC---------CCCeEEEEecCCCccc
Confidence 984 88999999999999999999999999999999998773 5678999999999986
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=1.8e-62 Score=510.66 Aligned_cols=381 Identities=34% Similarity=0.524 Sum_probs=311.2
Q ss_pred HHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecC
Q 010850 33 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPA 112 (499)
Q Consensus 33 ~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l 112 (499)
+++.+.|.+.||..|+++++|||||+|+|||+||+|+++|++|||+++++.++++++ ..+++.+.+.......+++
T Consensus 2 ~~~~~~f~~~fg~~p~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~----~~i~i~~~~~~~~~~~~~~ 77 (386)
T TIGR00131 2 ESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDD----KNVRIYLANADNKFAERSL 77 (386)
T ss_pred hHHHHHHHHHHCCCCCEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCC----CeEEEEECCCCCcceEEEC
Confidence 568899999999999999999999999999999999999999999999999999888 7788876542111122222
Q ss_pred CCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHH
Q 010850 113 EPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 192 (499)
Q Consensus 113 ~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~ 192 (499)
+.... ...+..|.+|+.+ ++..+.+.+... +.|+++.|.|+||+++|||||||++||++.|++.+++++++++
T Consensus 78 ~~~~~-~~~~~~w~~y~~~----~~~~~~~~~~~~--~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~ 150 (386)
T TIGR00131 78 DLPLD-GSEVSDWANYFKG----VLHVAQERFNSF--PLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSK 150 (386)
T ss_pred CCCCC-CCCCCCcHhHHHH----HHHHHHHhcCCC--CCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHH
Confidence 21010 1234789999954 444454444321 3699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCC-CcEEEEEeCCCcccccccccccchhHHH
Q 010850 193 EIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVV 270 (499)
Q Consensus 193 ~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~-~~~~vl~~s~~~~~~~~~~~~~y~~r~~ 270 (499)
+++++|+.+|+ +.|.++|+|||+++++||.|++++++|++..+.++++|. ++.|+|++|+++++ +.+..||.|+.
T Consensus 151 ~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~~~~~~~~~~~~lvv~~s~~~~~---t~~~~y~~r~~ 227 (386)
T TIGR00131 151 QILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTNVKRT---LAPSNYNTRRQ 227 (386)
T ss_pred HHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEEcCCCceeeecCCCCCeEEEEEeCCCccc---cccchhHHHHH
Confidence 99999999997 689999999999999999999999999998888999997 89999999999755 66789999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCC
Q 010850 271 ECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSS 350 (499)
Q Consensus 271 e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 350 (499)
||+.|+++++... .++|+++.+.. + ..+.+.++. +
T Consensus 228 e~~~a~~~l~~~~----------~~~lr~~~~~~------------------------~--~~~~~~~~~-~-------- 262 (386)
T TIGR00131 228 ECTTAANFLAATD----------KGALRDFMNEY------------------------F--ARYIARLTK-M-------- 262 (386)
T ss_pred HHHHHHHHhcccc----------ccchhhCCHHH------------------------H--hhhHhhHhh-c--------
Confidence 9999999886531 12344332110 0 000000000 0
Q ss_pred CchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHH-Hh
Q 010850 351 SSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RN 429 (499)
Q Consensus 351 ~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a-~~ 429 (499)
...+.+|+.|+++|+.||.+++++|.++ |++.||++|+++|.+++++|++|||++|.+++.+ +.
T Consensus 263 ----------~~~~~~r~~h~v~e~~rv~~~~~al~~~-----d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~ 327 (386)
T TIGR00131 263 ----------LPLVEERAKHVVSENLRVLKAVKAMKDN-----DFKQFGALMNESHASCDDDYECTCPEIDELVCSAALV 327 (386)
T ss_pred ----------CHHHHhhHheeehHHHHHHHHHHHHHhC-----cHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhc
Confidence 1124678999999999999999999986 7999999999999999998999999999999875 66
Q ss_pred CCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 010850 430 NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 496 (499)
Q Consensus 430 ~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 496 (499)
.|++|+||||||||||+++|++++.++++.+++.+.|++... .++.+|++.++.|++.
T Consensus 328 ~GAlGakltGaG~GG~vial~~~~~~~~v~~~~~~~y~~~~~---------~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 328 NGSGGSRMTGAGFGGCTVHLVPNENVDKVRQAVADKYPKKTG---------LELTFYVIVSKPGAGS 385 (386)
T ss_pred CCCcEEEEecCCCceEEEEEEcHHHHHHHHHHHHHHHHHhhC---------CCCcEEEEEECCCcCC
Confidence 899999999999999999999998999999999999976553 4778999999999875
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=3e-60 Score=488.44 Aligned_cols=357 Identities=27% Similarity=0.402 Sum_probs=297.9
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
.++++|||||+|+|||+||+|++||++|||+++++.++++++ ..+++.+.+... ...++++. .......|.+
T Consensus 2 ~~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~----~~i~i~s~~~~~-~~~~~~~~---~~~~~~~w~~ 73 (363)
T PRK00555 2 TVRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHT----DAITASSDRADG-SARIPLDT---TPGQVTGWAA 73 (363)
T ss_pred CEEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCC----CEEEEEECCCCC-ceEEecCC---CCCCCcchHH
Confidence 367899999999999999999999999999999999999998 788887764311 12232221 1123467999
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hhC
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIG 206 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~-~~g 206 (499)
|+ ++++..++..+.. ..|+++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+.+|+ +.|
T Consensus 74 y~----~gv~~~l~~~g~~---~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G 146 (363)
T PRK00555 74 YA----AGVIWALRGAGHP---VPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVG 146 (363)
T ss_pred HH----HHHHHHHHHcCCC---CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCC
Confidence 98 4666667766654 369999999999999999999999999999999999999999999999999997 789
Q ss_pred CCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCC---CcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHh
Q 010850 207 TQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA---GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 283 (499)
Q Consensus 207 ~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~---~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~ 283 (499)
.+||.|||+++++||.|++++++|++..+.++++|. ++.|++++|++++ .+.+..||.|+.||+.+++.+..
T Consensus 147 ~~~G~~Dq~as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~~---~~~~~~y~~rr~~~~~~~~~~~~-- 221 (363)
T PRK00555 147 APTGLLDQLAALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARH---RHAGGEYAARRASCERAAADLGV-- 221 (363)
T ss_pred CCCChhHHHHHHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCcc---cccchhhHHHHHHHHHHHHHhCc--
Confidence 999999999999999999999999887788888764 3679999999864 46678999999999998776532
Q ss_pred CCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhh
Q 010850 284 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 363 (499)
Q Consensus 284 g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (499)
++++++.. +.+..+ . . ..++.
T Consensus 222 -----------~~lr~~~~-----------------------------~~~~~~-~----~--------------~~~~~ 242 (363)
T PRK00555 222 -----------SSLRAVQD-----------------------------RGLAAL-G----A--------------IADPI 242 (363)
T ss_pred -----------cchhcCCH-----------------------------HHHHHH-H----h--------------cCChH
Confidence 12333211 001100 0 0 01123
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCc
Q 010850 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWG 443 (499)
Q Consensus 364 ~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~G 443 (499)
.++|+.|+++|+.|+.+++++|.++ |++.||++|+++|+++|+.++||+|++|.|++.+++.|++|+||||||||
T Consensus 243 ~~~r~~h~~~e~~~v~~~~~al~~g-----d~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~GaklsGaG~G 317 (363)
T PRK00555 243 DARRARHVLTENQRVLDFAAALADS-----DFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFG 317 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEECCCCcc
Confidence 5789999999999999999999986 79999999999999999888999999999999999999999999999999
Q ss_pred ceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 010850 444 GCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 497 (499)
Q Consensus 444 G~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 497 (499)
||+++|++++..+++.+++++.|+++++ ..+.+|.++|++|++++
T Consensus 318 g~vial~~~~~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 318 GCVIALVPADRAEDVADTVRRAAVTAGY---------PEPAVSRTYAAPGAGEC 362 (363)
T ss_pred CeEEEEEchhHHHHHHHHHHHHHHHccC---------CCCcEEEEecCCCcccC
Confidence 9999999988899999999999998764 46789999999999975
No 9
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-61 Score=486.20 Aligned_cols=481 Identities=40% Similarity=0.610 Sum_probs=403.6
Q ss_pred CcCcchhcchhhhhCCchhhHHHHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEE
Q 010850 6 ELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIR 85 (499)
Q Consensus 6 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~ 85 (499)
..-+|.|.+ ..++.+..++. .+-....+|...||..|.+++++|||+||+|||.||+++.|++||||..+.+.+.
T Consensus 2 ~~~~P~f~~-~~~~~P~~~~~----k~l~~~~~~~~~~~~kp~~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~ 76 (489)
T KOG0631|consen 2 VTGVPEFVS-SEISLPRLLIL----KVLKEAGAFQAAYGAKPVFVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVA 76 (489)
T ss_pred cccCccccc-chhhCCcHHHH----HHHHHHHHHHHhhCCCceEEEecCCceecccceeeecCceeeeEEeeeeeEEEEE
Confidence 344677777 88998887533 3444445666699999999999999999999999999999999999999999999
Q ss_pred ECCCcCCcceEEEEeCCCCCCceeecCCC-CcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCC
Q 010850 86 KHDSKEAEKVLKIANVSDKYNMCTYPAEP-DQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG 164 (499)
Q Consensus 86 ~~~~~~~~~~i~i~s~~~~~~~~~~~l~~-~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g 164 (499)
+.+++ ...+++.+.+..|...++++|. ...++...+.|.||++|+++++-++++..+.....+.|+.+...+++|.|
T Consensus 77 ~~~d~--~~sl~~tN~~~~f~~~~~~~p~~~~~I~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtg 154 (489)
T KOG0631|consen 77 PSDDG--IVSLRLTNFNPDFIYFKYPLPSIVWQIDPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTG 154 (489)
T ss_pred EcCCC--ceeEEEecCCCccceeeccCCchhcccCCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCC
Confidence 99882 1247777777677767777765 34566678999999999999998888443332211259999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEee--cCCCeeEEee
Q 010850 165 SGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID--FNPIRTTDVQ 239 (499)
Q Consensus 165 ~GLGSSaA~~va~~~al~~~~-~~~--l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~--~~~~~~~~i~ 239 (499)
+||+||||.+++.+.|...+. |.+ ..++++..+...+|+++|..+|+|||+++++|..+++++++ +.|++...++
T Consensus 155 sgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~~~~lk 234 (489)
T KOG0631|consen 155 SGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALLVDPYFTPFRRSMLK 234 (489)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEEecccCCcccccccc
Confidence 999999999999999998888 887 78999999999999999999999999999999999999999 6788888999
Q ss_pred cCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhH
Q 010850 240 LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFA 319 (499)
Q Consensus 240 ~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~ 319 (499)
+|+...|+|.++.+.++|..++..+||.|+.||++++.++.+++++.+.+.+..+...+. -+. .-..|..+..+++..
T Consensus 235 ~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~l~~ 312 (489)
T KOG0631|consen 235 LPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRA-WRG-DIGEGYERAEEMLGL 312 (489)
T ss_pred CCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhc-ccc-ccchhHHHHHHHHHH
Confidence 998889999999999999999999999999999999999999999887644322222222 000 112223356677778
Q ss_pred HHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCC-cchHHHHHH
Q 010850 320 VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL-SEEDKLKKL 398 (499)
Q Consensus 320 v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~-~~~~d~~~l 398 (499)
|.+.+.+.|++.+++.+.++.+..++.++++...++ .....++++|++|+++|+.|+.++..++.+.. ..++.+..|
T Consensus 313 v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~ 390 (489)
T KOG0631|consen 313 VEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADF 390 (489)
T ss_pred HHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHH
Confidence 888888889999999999999888888887776654 33445689999999999999999999998753 223558899
Q ss_pred HHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccC
Q 010850 399 GDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINN 478 (499)
Q Consensus 399 g~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (499)
|+||+++|.+++.+|+|||||+|+|++++++.|.+|+|+||||||||+++|++.+.++.+.+.+.+.||++.. +.+.+
T Consensus 391 g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~--~~~~~ 468 (489)
T KOG0631|consen 391 GRLMNESHRSCDVLYECSCPELDQLCKIALANGGVGARLTGAGWGGCTVALVPADLVDFAVAALKEIYYEKAY--PKFAQ 468 (489)
T ss_pred HHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCCccceeeccccccceeeeccccchHHHHHhhhhhhhcccc--chhhh
Confidence 9999999999999999999999999999999999999999999999999999989999999999999999874 77788
Q ss_pred CCCcceEEEeeCCCceeeccC
Q 010850 479 NDLGLYVFASKPSSGAAKFKF 499 (499)
Q Consensus 479 ~~~~~~~~~~~p~~Ga~v~~~ 499 (499)
+.....+++++|+.|+.++.+
T Consensus 469 ~~~k~~~~~skp~~g~~l~el 489 (489)
T KOG0631|consen 469 DELKKALIVSKPAAGVLLLEL 489 (489)
T ss_pred chhhceEEEecCchhhhhccC
Confidence 877889999999999988764
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=2.6e-52 Score=429.38 Aligned_cols=348 Identities=31% Similarity=0.456 Sum_probs=287.1
Q ss_pred EEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchH
Q 010850 50 YARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYF 129 (499)
Q Consensus 50 ~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 129 (499)
.++|||||+|+|||+||+|+++|++|||+++++.+++.+. +++.+.+... ...++++. + .....|.+|+
T Consensus 2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~~~------~~i~~~~~~~-~~~~~~~~---~-~~~~~~~~~~ 70 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSEK------FIFYSENFNE-EKTFELDK---L-EKLNSWADYI 70 (351)
T ss_pred EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeCCe------EEEEECCCCC-cEEEeCCc---c-CCCCchHHHH
Confidence 5889999999999999999999999999999999987533 6665543211 12344332 1 2346798998
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hhCCC
Q 010850 130 ICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQ 208 (499)
Q Consensus 130 ~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~-~~g~~ 208 (499)
. +++..+.+.+.. ..|+++.++|+||+++|||||||+++|++.|++.+++.++++++++++|.++|+ +.|.+
T Consensus 71 ~----~~~~~~~~~~~~---~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~ 143 (351)
T PRK03817 71 K----GVIWVLEKRGYE---VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVP 143 (351)
T ss_pred H----HHHHHHHHcCCC---CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCC
Confidence 5 444556655553 379999999999999999999999999999999999999999999999999997 78999
Q ss_pred CCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCch
Q 010850 209 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ 288 (499)
Q Consensus 209 ~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~ 288 (499)
+|.||++++.+|+.+.++++++.+..+.++++|.++.|+|++|+.++ .+.+..||.|+.+|+.+++.++..
T Consensus 144 ~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~sg~~~---~~~~~~~~~~~~~~~~~~~~l~~~------ 214 (351)
T PRK03817 144 CGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDTGVKR---ELASSEYNERRQECEEALKILGKK------ 214 (351)
T ss_pred CcCchhhheeeccCCEEEEEecCCCceEEEecCCCcEEEEEeCCCcc---ccccchhHHHHHHHHHHHHHhCcc------
Confidence 99999999999998888888988877788889989999999999854 355678999999999988776432
Q ss_pred hhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhH
Q 010850 289 EAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 368 (499)
Q Consensus 289 ~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (499)
+++++ +.+.+.. + ...+++|+
T Consensus 215 -------~~~~~-----------------------------~~~~~~~--------l---------------~~~~~~~~ 235 (351)
T PRK03817 215 -------SSKEV-----------------------------TEEDLSK--------L---------------PPLLRKRA 235 (351)
T ss_pred -------chhcC-----------------------------CHHHHHh--------C---------------CHHHHHHH
Confidence 11111 0011100 0 01256889
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEE
Q 010850 369 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 448 (499)
Q Consensus 369 ~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~via 448 (499)
.|+++|+.|+.+++.+|.++ |++.||++|+++|.++++.|++++|++|.|++.+++.|++|+||||||||||+++
T Consensus 236 ~~~v~e~~r~~~~~~al~~~-----d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsGaG~Gg~vla 310 (351)
T PRK03817 236 GYVLRENERVLKVRDALKEG-----DIETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTGAGFGGSAIA 310 (351)
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEecCCCCeEEEE
Confidence 99999999999999999986 7999999999999999998999999999999999999999999999999999999
Q ss_pred EEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 010850 449 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 497 (499)
Q Consensus 449 L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 497 (499)
|+++++++++.+.+++.|..... +.+.+|++.|+.|++++
T Consensus 311 l~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~G~~~~ 350 (351)
T PRK03817 311 LVDKGKFESIGEELLEEYKKRFG---------IDPKYFVVESSDGVRKI 350 (351)
T ss_pred EEchHHHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCCceeC
Confidence 99988899999999998876542 46689999999999986
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=2.8e-44 Score=356.33 Aligned_cols=295 Identities=28% Similarity=0.408 Sum_probs=220.6
Q ss_pred EEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchH
Q 010850 50 YARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYF 129 (499)
Q Consensus 50 ~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 129 (499)
.++||||++|+|||+|+||+++|++||+++.+++++..++ .++.+.+.+. ....++. .+. ..|+
T Consensus 2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~----~~~~i~~~~~--~~~~~~~--------~~~--~~~~ 65 (307)
T COG1577 2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDS----NKIVIESSDL--KSSTLER--------DED--EGYI 65 (307)
T ss_pred cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCC----CcEEEeccCC--CCccccc--------ccc--chHH
Confidence 5789999999999999999999999999999999998887 6777766432 1110110 011 1566
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCC
Q 010850 130 ICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQS 209 (499)
Q Consensus 130 ~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~ 209 (499)
..+++.+.+++.+ .. ..||+++|.|+||+++|||||||++||++.|++.++|..+++++++++++++|..+++++
T Consensus 66 ~~~v~~~~e~~~~--~~---~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~ 140 (307)
T COG1577 66 QAAVRLASELLNQ--SS---LKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKA 140 (307)
T ss_pred HHHHHHHHHHhcc--cC---CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 6566655555543 11 379999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchh
Q 010850 210 GGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQE 289 (499)
Q Consensus 210 g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~ 289 (499)
|++|.++++|||. +.|..+ ...+++.++....|+|.|++.+.+|.
T Consensus 141 Sg~D~a~~~~gg~--v~~~~~--~~~~~l~~~~~~~~~I~~tg~~~sT~------------------------------- 185 (307)
T COG1577 141 SGIDIATITYGGL--VAFKKG--FDFEKLEIELLGTLVIGDTGVPGSTK------------------------------- 185 (307)
T ss_pred CcccceEEEeCCE--EEEecC--CCccccccccCCeEEEEEcCCcCcHH-------------------------------
Confidence 9999999999994 333222 34455555544489999999875432
Q ss_pred hhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHh
Q 010850 290 AISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAA 369 (499)
Q Consensus 290 ~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 369 (499)
++|+.|++.+++.+.. +. ++ ++..-
T Consensus 186 -------------------------e~V~~V~~l~~~~~~~---~~--------~~-------------------~~~ig 210 (307)
T COG1577 186 -------------------------ELVAGVAKLLEEEPEV---ID--------PI-------------------LDAIG 210 (307)
T ss_pred -------------------------HHHHHHHHHHHhhhHH---HH--------HH-------------------HHHHH
Confidence 2344455554332211 10 11 11111
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEE
Q 010850 370 HVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 449 (499)
Q Consensus 370 ~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL 449 (499)
.-+.++..++.++ |.+.||++|+.+|..|..+ +||+|++|+|++.++++|+.|||+||||+|||+|+|
T Consensus 211 ------~~~~~a~~al~~~-----d~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL 278 (307)
T COG1577 211 ------ELVQEAEAALQTG-----DFEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCIIAL 278 (307)
T ss_pred ------HHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceEEEE
Confidence 1244566777765 7999999999999999998 799999999999999999999999999999999999
Q ss_pred EeCCchHHHHHHHHHHHHhcc
Q 010850 450 VKESIDSQFILNLKEQFYQSR 470 (499)
Q Consensus 450 ~~~~~~~~~~~~l~~~~~~~~ 470 (499)
+++.+. .+.+...+++.+
T Consensus 279 ~~~~~~---~~~l~~~~~~~~ 296 (307)
T COG1577 279 AKNEEI---AETLSNRLEKAG 296 (307)
T ss_pred eccchH---HHHHHHHHHhcC
Confidence 986221 344444444444
No 12
>PLN02677 mevalonate kinase
Probab=100.00 E-value=2.2e-43 Score=363.04 Aligned_cols=338 Identities=21% Similarity=0.257 Sum_probs=227.8
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCC----CceeecCCCCcccc-ccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKY----NMCTYPAEPDQEID-MKH 122 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~----~~~~~~l~~~~~~~-~~~ 122 (499)
.+.++||||++|+|||+||+|+++|++|||+++++.+++++...+...+.+.-.+-.+ ....+......... ...
T Consensus 2 ~i~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~~~~~~~~~~ 81 (387)
T PLN02677 2 EVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEALPDLGTPCPS 81 (387)
T ss_pred ceEEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhhccccccccc
Confidence 3679999999999999999999999999999999999875320011344432111111 11111110000000 001
Q ss_pred CCccchHHHHHHHHHHHHHHcCCC-------------------CCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHH
Q 010850 123 HQWGHYFICGYKAFYEYVKAKGLD-------------------VGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMA 183 (499)
Q Consensus 123 ~~~~~~v~~~i~~v~~~l~~~~~~-------------------~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~ 183 (499)
..| .+...++..+..++...+.+ +....++++.|+|+||+|+|||||||++||++.|++.
T Consensus 82 ~~~-~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~ 160 (387)
T PLN02677 82 TPT-SCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCVALSAALLA 160 (387)
T ss_pred ccc-ccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHH
Confidence 122 23334444444444432211 0002578999999999999999999999999999999
Q ss_pred HhC-CCC-------------CHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEE
Q 010850 184 AFG-VEV-------------PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVA 249 (499)
Q Consensus 184 ~~~-~~l-------------~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~ 249 (499)
+++ +++ +.+++.++|+.+|+..|+++|++|+++++|||. +.|++...++++.|.++.++|+
T Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~-----I~f~~~~~~~l~~~~~l~llv~ 235 (387)
T PLN02677 161 ASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVSTYGNM-----IKFKSGELTRLQSNMPLKMLIT 235 (387)
T ss_pred HhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCe-----EEEcCCCceecCCCCCceEEEE
Confidence 998 322 236888999999997777777789999999983 5666656677777778999999
Q ss_pred eCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCC
Q 010850 250 HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPY 329 (499)
Q Consensus 250 ~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 329 (499)
||+++++|+ ++|+.|++...+.|
T Consensus 236 dTgv~~sT~--------------------------------------------------------~lV~~V~~~~~~~p- 258 (387)
T PLN02677 236 NTRVGRNTK--------------------------------------------------------ALVAGVSERALRHP- 258 (387)
T ss_pred ECCCCCcHH--------------------------------------------------------HHHHHHHHHHHhCH-
Confidence 999986543 23444555544332
Q ss_pred CHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhc--CCc--chHHHHHHHHHHHHH
Q 010850 330 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS--NLS--EEDKLKKLGDLMNDS 405 (499)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~--~~~--~~~d~~~lg~lm~~s 405 (499)
+.+.. +++.+.+ -+.++.++|.+ ++. .++|++.||++|+.+
T Consensus 259 --~~~~~---------------------------il~~~~~------i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N 303 (387)
T PLN02677 259 --DAMKS---------------------------VFNAVDS------ISEELATIIQSPAEDELSITEKEEKLKELMEMN 303 (387)
T ss_pred --HHHHH---------------------------HHHHHHH------HHHHHHHHHhccccccccccchHHHHHHHHHHH
Confidence 11111 1122222 24456677776 211 124799999999999
Q ss_pred hHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceE
Q 010850 406 HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYV 485 (499)
Q Consensus 406 h~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 485 (499)
|..|+.+ |||+|.+|.+++++++.| +|||+||||+|||+|+|++++..++..+.+.+.+.+.++ .+
T Consensus 304 ~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~G~------------~~ 369 (387)
T PLN02677 304 QGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESSGF------------QC 369 (387)
T ss_pred HHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEcccccchhHHHHHHHHHHHCCC------------eE
Confidence 9999988 899999999999999985 799999999999999999764334444455555554443 57
Q ss_pred EEeeCCC-ceeec
Q 010850 486 FASKPSS-GAAKF 497 (499)
Q Consensus 486 ~~~~p~~-Ga~v~ 497 (499)
|.+.++. |++|.
T Consensus 370 ~~~~~g~~Gv~~~ 382 (387)
T PLN02677 370 FTAGIGGNGVQIC 382 (387)
T ss_pred EEEEeCCCceEEE
Confidence 7666655 88764
No 13
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=6.3e-43 Score=359.53 Aligned_cols=309 Identities=16% Similarity=0.207 Sum_probs=229.0
Q ss_pred eEEEccceeeeeccccccC-CCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCc-cc-ccccCCc
Q 010850 49 VYARCPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQ-EI-DMKHHQW 125 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~-G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~-~~-~~~~~~~ 125 (499)
+.++||||++|+|||+||+ |+++|++|||++++++++++++ ..++|.+.+.......+...... .. ......|
T Consensus 1 ~~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~----~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01220 1 IVVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADG----AADVIISSDLGPQPVGWRRHDGRLVVRDPDARSA 76 (358)
T ss_pred CeeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCC----CceEEEecCCCCCceEEEecCCceeecccccccc
Confidence 3578999999999999998 8899999999999999998887 55677664421111222221100 00 1123578
Q ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCC----CCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 126 GHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 126 ~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g----~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
.+|+.+++..+..++...+.. .+|+++.|.|+||++ +|||||||++||++.|++.+++.++++++++++|+.+
T Consensus 77 ~~~v~~~i~~~~~~~~~~~~~---~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~ 153 (358)
T TIGR01220 77 LAYVVSAIETVERYAGERNQK---LPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLA 153 (358)
T ss_pred hHHHHHHHHHHHHHHHhcCCC---CCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 899987777666666665554 368999999999984 6999999999999999999999999999999999999
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeecCC----------------------CeeEEeecCCCcEEEEEeCCCcccccc
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDFNP----------------------IRTTDVQLPAGGTFVVAHSLAESLKAI 259 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~----------------------~~~~~i~~p~~~~~vl~~s~~~~~~~~ 259 (499)
|+..++++|++|+++++|||+ +.|-.+.+ ..++++++|.+++++|++|+.++++.
T Consensus 154 E~~~~g~~sg~D~~a~~~GG~--i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~T~- 230 (358)
T TIGR01220 154 TAELQPKGSCGDIAASTYGGW--IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPASTA- 230 (358)
T ss_pred HhhhCCCCCcchhhhhhhCCE--EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcCcH-
Confidence 987777778889999999994 33433332 23677788888999999999875432
Q ss_pred cccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhh
Q 010850 260 TAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITE 339 (499)
Q Consensus 260 ~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~ 339 (499)
++++.|++.+.+.+ +.+..
T Consensus 231 -------------------------------------------------------~~v~~V~~~~~~~~---~~~~~--- 249 (358)
T TIGR01220 231 -------------------------------------------------------SLVSDVHRRKWRGS---ASYQR--- 249 (358)
T ss_pred -------------------------------------------------------HHHHHHHHHhhcCh---HHHHH---
Confidence 12222332222211 00100
Q ss_pred hhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhh-----cC
Q 010850 340 EKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YE 414 (499)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~-----~~ 414 (499)
..+++. ..+.++.++|.++ |++.||++|+++|..|+.+ .+
T Consensus 250 ------------------------~l~~~~------~i~~~~~~al~~~-----d~~~lg~~~~~~~~lL~~l~~~~~~~ 294 (358)
T TIGR01220 250 ------------------------FLETST------DCVESAITAFETG-----DITSLQKEIRRNRQELARLDDEVGVG 294 (358)
T ss_pred ------------------------HHHHHH------HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 112222 1345678888876 6999999999999999986 37
Q ss_pred CCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCC-chHHHHHHHHH
Q 010850 415 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 464 (499)
Q Consensus 415 vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~-~~~~~~~~l~~ 464 (499)
+|+|+++.|++.+++.|+ |+|+||||+|||+|+|++++ ..+++.++|++
T Consensus 295 vs~~~l~~li~~a~~~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~ 344 (358)
T TIGR01220 295 IETEKLKALCDAAEAYGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWET 344 (358)
T ss_pred cCCHHHHHHHHHHhhcCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHH
Confidence 999999999999999998 99999999999999999753 45555555543
No 14
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=3.8e-42 Score=342.25 Aligned_cols=272 Identities=29% Similarity=0.411 Sum_probs=200.1
Q ss_pred ccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchHHHH
Q 010850 53 CPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICG 132 (499)
Q Consensus 53 APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 132 (499)
||||++|+|||+||+|++||++|||+++++.+.++++ . +.+.+.. +... .. ........|.+|+.
T Consensus 1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~----~-~~i~~~~--~~~~---~~---~~~~~~~~~~~~v~-- 65 (273)
T TIGR00549 1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSD----G-SFIESDL--GRGS---LD---DAPQELDGLVSYIA-- 65 (273)
T ss_pred CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCC----C-ceEeccc--cCCc---Hh---HhhHHHHHHHHHHH--
Confidence 7999999999999999999999999999999998877 4 4554432 1110 00 01123456888885
Q ss_pred HHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhh-CCCCCc
Q 010850 133 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI-GTQSGG 211 (499)
Q Consensus 133 i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~-g~~~g~ 211 (499)
+++..+...+ ..++++.++|+||.++|||||||+++|++.|++++++.++++++++++|+.+|+.. |.++|
T Consensus 66 --~~l~~~~~~~-----~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG- 137 (273)
T TIGR00549 66 --EALSYFSELN-----PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG- 137 (273)
T ss_pred --HHHHHhhccC-----CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-
Confidence 4445554322 13599999999999999999999999999999999999999999999999999854 55555
Q ss_pred hhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhh
Q 010850 212 MDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAI 291 (499)
Q Consensus 212 ~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~ 291 (499)
+|++++++||. ++++.... ..++..|.++.+++++|+.++++...
T Consensus 138 ~D~~~~~~Gg~---~~~~~~~~-~~~~~~~~~~~lvl~~tg~~~~T~~~------------------------------- 182 (273)
T TIGR00549 138 IDTATSTYGGP---VYFEKGEG-EFTKLISLDGYFVIADTGVSGSTKEA------------------------------- 182 (273)
T ss_pred HhHHHHhcCCe---EEEEcCCC-ceeeccCCCeEEEEEECCCCCcHHHH-------------------------------
Confidence 79999999984 44454332 22344455789999999986543210
Q ss_pred hccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHH
Q 010850 292 SKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV 371 (499)
Q Consensus 292 ~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 371 (499)
++.|++.+...+ +...+ ..+++.
T Consensus 183 -------------------------~~~v~~~~~~~~---~~~~~---------------------------~~~~~~-- 205 (273)
T TIGR00549 183 -------------------------VARVRQLLERFP---ELIDS---------------------------IMDAIG-- 205 (273)
T ss_pred -------------------------HHHHHHHHHhCH---HHHHH---------------------------HHHHHH--
Confidence 000111110000 00000 111111
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEE
Q 010850 372 YSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 449 (499)
Q Consensus 372 i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL 449 (499)
.++.+++++|.++ |++.||++|+++|..+++. ++++|++|+|++.+++.|++|+||||||+|||+++|
T Consensus 206 ----~~~~~~~~al~~~-----d~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ----ELTLEAKAALQDG-----DVESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred ----HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 3566778889876 7999999999999999875 899999999999999999999999999999999986
No 15
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=5.7e-39 Score=356.16 Aligned_cols=302 Identities=19% Similarity=0.238 Sum_probs=222.2
Q ss_pred eEEEccceeeeeccccc------cCCCeeeEeecccc----eEEEEEECCCcCCcceEEEEeCCCCCCceeecC-CCCcc
Q 010850 49 VYARCPGRVNLIGEHID------YEGYSVLPMAIRQD----TIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPA-EPDQE 117 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d------~~G~~~l~~AId~~----~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l-~~~~~ 117 (499)
++++|||||+|+|||+| |+||.|+++||+++ +++.++++.+ .++++.+.+.+- ...++. +....
T Consensus 610 ~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d----~~irl~S~d~~~-~~~v~~~~~l~~ 684 (974)
T PRK13412 610 VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSE----PHIVLRSIDLGA-MEVVRTNEELRD 684 (974)
T ss_pred EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCC----CeEEEEECCCCC-ceEEecchhhcc
Confidence 45699999999999999 99999999999996 9999999988 889998865321 112222 11111
Q ss_pred cccccCCccchHHHHHH--------------HHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHH
Q 010850 118 IDMKHHQWGHYFICGYK--------------AFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMA 183 (499)
Q Consensus 118 ~~~~~~~~~~~v~~~i~--------------~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~ 183 (499)
. ....+|.+|+++++. .+.+.++..| .|+++.|.|+||+|+|||||||++||++.|++.
T Consensus 685 ~-~~~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G------~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~ 757 (974)
T PRK13412 685 Y-KKVGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFG------SGIEITLLAAIPAGSGLGTSSILAATVLGAISD 757 (974)
T ss_pred c-ccccchHhhhhhhheecccccccccchhHHHHHHHHhcC------CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHH
Confidence 1 234668888876542 1222333322 599999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCC-C----eeEEeecCC------CcEEEEEeCC
Q 010850 184 AFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNP-I----RTTDVQLPA------GGTFVVAHSL 252 (499)
Q Consensus 184 ~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~-~----~~~~i~~p~------~~~~vl~~s~ 252 (499)
+++.++++++++++|..+|+.+|+++|++||+++++||. .++++.+ . .+.+++.+. +-.++|++||
T Consensus 758 ~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~---~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTG 834 (974)
T PRK13412 758 FCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGV---KLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTG 834 (974)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCe---EEEEecCCcccCcceeecCcchhhhhhccCcEEEEECC
Confidence 999999999999999999999999999999999999994 4555543 1 233444332 3469999999
Q ss_pred CcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhH-HHHhhhcCCCCH
Q 010850 253 AESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFA-VKEFLRKEPYTA 331 (499)
Q Consensus 253 ~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~-v~~~l~~~~~~~ 331 (499)
++++++. +++. ++....+.
T Consensus 835 itR~T~~--------------------------------------------------------iV~~Vv~~~~~~~---- 854 (974)
T PRK13412 835 ITRTAKG--------------------------------------------------------ILAEIVRSMFLNS---- 854 (974)
T ss_pred CeeeHHH--------------------------------------------------------HHHHHHHHHHhCc----
Confidence 8654221 1111 11111110
Q ss_pred HHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhh
Q 010850 332 LDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV 411 (499)
Q Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~ 411 (499)
+.... +++++.. -+.++.++|.++ |++.||++|+++|+.++.
T Consensus 855 ~~~~~---------------------------~l~~ig~------La~ea~~ALe~g-----D~~~LG~LMn~~w~ll~~ 896 (974)
T PRK13412 855 TAHLQ---------------------------LLHEMKA------HALDMYEAIQRG-----EFEEFGRLVGKTWEQNKA 896 (974)
T ss_pred HHHHH---------------------------HHHHHHH------HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHh
Confidence 00000 1112221 245578888886 799999999999999988
Q ss_pred hc-CCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeC-CchHHHHHHHHH
Q 010850 412 LY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKE 464 (499)
Q Consensus 412 ~~-~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~-~~~~~~~~~l~~ 464 (499)
+. +||+|++|.|++.|++ |++|+|+||||+|||+|+|+++ +.++++.+++++
T Consensus 897 L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~ 950 (974)
T PRK13412 897 LDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAERIRKILTE 950 (974)
T ss_pred ccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHHHHHHHHHh
Confidence 73 7999999999999976 7999999999999999999964 567777777765
No 16
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=4.7e-39 Score=327.77 Aligned_cols=300 Identities=21% Similarity=0.252 Sum_probs=213.2
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccch
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHY 128 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (499)
....||||++|||||+|+||.++|..+|+++..+.++..+.. ..+.+.+....++ .+ ...-.|.
T Consensus 11 ~~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~~~~~---~~~~~~~~~~~~~-----~~--------~~~~~n~ 74 (328)
T PTZ00298 11 GKHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGV---PGLQVVDQRPAVP-----GY--------IVEKREE 74 (328)
T ss_pred cCCCcCeeEEEEecceeecCCchhhhecccceEEEEEEccCC---CCceecccccccc-----ch--------HHHhHHH
Confidence 467899999999999999999999999999987777654320 2233322111110 00 0011244
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh-hCC
Q 010850 129 FICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF-IGT 207 (499)
Q Consensus 129 v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~-~g~ 207 (499)
+..+.+.+... .+... ...|++|.|.++||+++|||||||+++|++.+++.+++.++++++++++|..+|+. .|.
T Consensus 75 ~~~a~~~~~~~---~~~~~-~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~ 150 (328)
T PTZ00298 75 QRKAHQLVLRH---LNIDT-SVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGT 150 (328)
T ss_pred HHHHHHHHHHH---Hhccc-CCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 43333333332 33321 12599999999999999999999999999999999999999999999999999985 555
Q ss_pred CCCchhhhhhhhhcCCceEEeecCC--CeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCC
Q 010850 208 QSGGMDQAISIMAKSGFAELIDFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 285 (499)
Q Consensus 208 ~~g~~D~~~~~~Gg~~~~~~i~~~~--~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~ 285 (499)
++| +|++++++||. .++.... ....++++|.++.+++++|+++.++... |
T Consensus 151 ~sG-~D~~~~~~Gg~---~~~~~~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~~----~-------------------- 202 (328)
T PTZ00298 151 PSG-ADNTAATYGGL---ISYRRVNGKSVFKRIAFQQPLYLVVCSTGITASTTKV----V-------------------- 202 (328)
T ss_pred CCh-HHHHHHHcCCe---EEEecCCCccceeEecCCCCCeEEEEECCCchhHHHH----H--------------------
Confidence 554 69999999984 3333222 2456777777889999999986543210 0
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhh
Q 010850 286 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 365 (499)
Q Consensus 286 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (499)
+.+++.....| +.+. .+.
T Consensus 203 --------------------------------~~v~~~~~~~p---~~~~---------------------------~~~ 220 (328)
T PTZ00298 203 --------------------------------GDVRKLKENQP---TWFN---------------------------RLL 220 (328)
T ss_pred --------------------------------HHHHHHHhcCH---HHHH---------------------------HHH
Confidence 00111100000 0000 012
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcce
Q 010850 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 445 (499)
Q Consensus 366 ~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~ 445 (499)
++..+ ++.++..+|.++ |++.+|++|+++|+.++.. ++++|+++.+++.+++.|++|+||||+|+|||
T Consensus 221 ~~~~~------~~~~~~~al~~~-----d~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~ 288 (328)
T PTZ00298 221 ENYNA------CVSEAKEALQKG-----NLFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGL 288 (328)
T ss_pred HHHHH------HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeE
Confidence 23333 345667788875 6999999999999999975 79999999999999999999999999999999
Q ss_pred EEEEEeC-CchHHHHHHHHHHHHhcc
Q 010850 446 VVALVKE-SIDSQFILNLKEQFYQSR 470 (499)
Q Consensus 446 viaL~~~-~~~~~~~~~l~~~~~~~~ 470 (499)
+++|+++ +.++++.+.+++.|+..+
T Consensus 289 v~al~~~~~~a~~~~~~l~~~~~~~~ 314 (328)
T PTZ00298 289 VVALAASEDQRDAIAKAVRARCPEAK 314 (328)
T ss_pred EEEEecchhhHHHHHHHHHHHhhhcC
Confidence 9999975 678889999988887654
No 17
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-38 Score=308.64 Aligned_cols=332 Identities=22% Similarity=0.288 Sum_probs=220.6
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEE--EeCCCCCCceeecCCC-------C----
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKI--ANVSDKYNMCTYPAEP-------D---- 115 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i--~s~~~~~~~~~~~l~~-------~---- 115 (499)
..++|||||+|+|||+|+||.+++++|||+|+++.+.+..+ +++.+ .+++.+ ..+.++. .
T Consensus 5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san----~~i~l~l~di~~~---~~w~l~~~~~~l~~~~~~~ 77 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSAN----DRILLQLPDISIE---KAWSLADFNGALPEQRSTY 77 (397)
T ss_pred eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCC----CeEEEecccCCce---EEEEhhhhhhhhhhhhhhh
Confidence 47999999999999999999999999999999999976554 44544 222211 1111111 0
Q ss_pred ---------------cccccccCCccch-HHHHHHHHHHHHHHcCCCC-CCCCCeEEEEEecCCCCCCCCchHHHHHHHH
Q 010850 116 ---------------QEIDMKHHQWGHY-FICGYKAFYEYVKAKGLDV-GPPVGLDILVDGTVPTGSGLSSSTAFVCSST 178 (499)
Q Consensus 116 ---------------~~~~~~~~~~~~~-v~~~i~~v~~~l~~~~~~~-~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~ 178 (499)
+.+..--.+-.++ ...++..++..|.-..... ...+.+.+.++|++|+|+|||||||++|+++
T Consensus 78 ~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~~~~~g~lp~~~v~v~SelP~GaGLGSSAa~sv~lA 157 (397)
T KOG1511|consen 78 ESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLCLRAPGTLPALTVVVDSELPLGAGLGSSAAISVALA 157 (397)
T ss_pred hccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhhhcccCCCcceEEEEeccCCCcCCcchhHHHHHHHH
Confidence 0000000000000 0001111111111000000 0013389999999999999999999999999
Q ss_pred HHHHHHhCCCCCH-----------HHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCCC-eeEEeecCCCcEE
Q 010850 179 VALMAAFGVEVPK-----------KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTF 246 (499)
Q Consensus 179 ~al~~~~~~~l~~-----------~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~-~~~~i~~p~~~~~ 246 (499)
.+++.++|.--++ +-+-++|+..|+..|+.+|++|+++|+|||. +.|.+. .++.+...+.+++
T Consensus 158 tall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~Gg~-----i~f~kg~~~~~Lk~~~~L~i 232 (397)
T KOG1511|consen 158 TALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTYGGL-----ISFKKGVEIESLKHLPPLRI 232 (397)
T ss_pred HHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhccCce-----EEeecCccceecccCCCceE
Confidence 9999988762112 3456789999998888888999999999993 677663 6666655557999
Q ss_pred EEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhc
Q 010850 247 VVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRK 326 (499)
Q Consensus 247 vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~ 326 (499)
+++||.+|++|+. +|+.|++.+.+
T Consensus 233 lltnTrv~RnTk~--------------------------------------------------------lVa~Vr~~~~k 256 (397)
T KOG1511|consen 233 LLTNTRVPRNTKA--------------------------------------------------------LVAGVRELLEK 256 (397)
T ss_pred EEEccccCccHHH--------------------------------------------------------HHHHHHHHHHh
Confidence 9999999977543 33334433322
Q ss_pred CCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHH
Q 010850 327 EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMND 404 (499)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~--~~~~d~~~lg~lm~~ 404 (499)
- +++++.+.++++.+ ..+++..+.+.+ .+...-+.+.+||..
T Consensus 257 f---------------Pevi~~i~~aid~i---------------------s~ea~~il~~e~~~~~~~~Eq~L~eLi~i 300 (397)
T KOG1511|consen 257 F---------------PEVIKAIFDAIDEI---------------------SLEAVWILQRENDEFSSPKEQKLEELIRI 300 (397)
T ss_pred h---------------hHHHHHHHHHHHHH---------------------HHHHHHHHhcccccCCCcHHHHHHHHHHH
Confidence 1 12222222222211 122333343211 011122259999999
Q ss_pred HhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcce
Q 010850 405 SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLY 484 (499)
Q Consensus 405 sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 484 (499)
||+.|..+ |||+|.+|.++...++.| +.+||||||+|||+++|++++..++.++.++++....+| .
T Consensus 301 Nq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~gf------------~ 366 (397)
T KOG1511|consen 301 NQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESHGF------------E 366 (397)
T ss_pred hHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceEEEEECCCCchHHHHHHHHHHHhcCc------------c
Confidence 99999987 999999999999999999 678999999999999999999888889999888876654 6
Q ss_pred EEEeeCCC-ceeecc
Q 010850 485 VFASKPSS-GAAKFK 498 (499)
Q Consensus 485 ~~~~~p~~-Ga~v~~ 498 (499)
+|.+..+. |+++.+
T Consensus 367 v~~t~lGG~G~~v~s 381 (397)
T KOG1511|consen 367 VFETELGGPGVSVHS 381 (397)
T ss_pred eeeccCCCCceEEEe
Confidence 88777765 888764
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=5.8e-38 Score=316.72 Aligned_cols=298 Identities=26% Similarity=0.334 Sum_probs=214.0
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccch
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHY 128 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (499)
+.++||||++|+|||+|++|+++|++||++++++.+++.++ . +.+... +. + ...|.++
T Consensus 2 ~~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~----~-~~i~~~---~~------~--------~~~~~~~ 59 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDD----S-IYIESD---YG------K--------TGEKHPY 59 (302)
T ss_pred eEEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCC----c-eEEecc---cc------c--------ccchhHH
Confidence 67899999999999999999999999999999999987754 2 444321 10 0 0135456
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCC
Q 010850 129 FICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ 208 (499)
Q Consensus 129 v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~ 208 (499)
+.. ++..+.+.. . .+|++++++++||+++|||||||+++|++.+++++++.++++++++++|..+|+..++.
T Consensus 60 ~~~----~~~~~~~~~-~---~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~ 131 (302)
T PRK03926 60 VSA----AIEKMREEA-D---KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGA 131 (302)
T ss_pred HHH----HHHHHHHhc-C---CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence 643 334444332 1 25999999999999999999999999999999999999999999999999999855444
Q ss_pred CCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCch
Q 010850 209 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ 288 (499)
Q Consensus 209 ~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~ 288 (499)
++++|++++++||. +++.+.. +++.| ++.++|++|+.+.++... |
T Consensus 132 ~sg~D~~~~~~Gg~--~~~~~~~-----~l~~~-~~~~vl~~~~~~~sT~~~----~----------------------- 176 (302)
T PRK03926 132 ASPTDTYVSTMGGF--VTIPDRK-----KLPFP-ECGIVVGYTGSSGSTKEL----V----------------------- 176 (302)
T ss_pred CchHHHHHHhcCCe--EEEcCCC-----cCCCC-CceEEEEECCCCCcHHHH----H-----------------------
Confidence 55579999999984 3322211 34433 788999999876543210 0
Q ss_pred hhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhH
Q 010850 289 EAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 368 (499)
Q Consensus 289 ~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (499)
+.+++.....| +.+.. ..++.
T Consensus 177 -----------------------------~~~~~~~~~~~---~~~~~---------------------------~~~~~ 197 (302)
T PRK03926 177 -----------------------------ANVRKLKEEYP---ELIEP---------------------------ILSSI 197 (302)
T ss_pred -----------------------------HHHHHHHHhCH---HHHHH---------------------------HHHHH
Confidence 00000000000 00000 00111
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEE
Q 010850 369 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 448 (499)
Q Consensus 369 ~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~via 448 (499)
.+ .+.++.+++.++ |++.||++|+++|..++. +++++|+++.+++.+++.|++|+||||+|+|||+++
T Consensus 198 ~~------~~~~~~~al~~~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~ 265 (302)
T PRK03926 198 GK------ISEKGEELILSG-----DYVSLGELMNINQGLLDA-LGVSTKELSELIYAARTAGALGAKITGAGGGGCMVA 265 (302)
T ss_pred HH------HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEE
Confidence 11 122345677765 799999999999976654 589999999999999999999999999999999999
Q ss_pred EEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 010850 449 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 498 (499)
Q Consensus 449 L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 498 (499)
|++++.++++.+++++. . ..++++++.+ |+.|..
T Consensus 266 l~~~~~~~~~~~~~~~~----~------------~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 266 LAAPEKQSEVATAIKIA----G------------GKPIITKITDEGLRIEE 300 (302)
T ss_pred EeccccHHHHHHHHHhc----C------------CeEEEEecCCCeeEEEe
Confidence 99888888888887642 1 2578888855 998853
No 19
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=7.3e-36 Score=284.75 Aligned_cols=295 Identities=20% Similarity=0.295 Sum_probs=215.1
Q ss_pred eEEEccceeeeeccccccC------CCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccccccc
Q 010850 49 VYARCPGRVNLIGEHIDYE------GYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH 122 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~------G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (499)
++.+||-||.+.|+.||++ ||.+++++||+|+++.+.+.-+ .+|++. .+ ..++. + ++....
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d----~~I~~~-~~----~~~~v-~---~~~~~~ 68 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFD----DEIRVR-YD----RTEFV-K---SYLENE 68 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCC----ceEEEe-cc----hHHhh-h---hhHhhc
Confidence 4677999999999999985 7889999999999999998877 677775 11 11111 1 010111
Q ss_pred CCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 010850 123 HQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202 (499)
Q Consensus 123 ~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E 202 (499)
+. ..+.++++.. ++...+. +.+++...+|+|+|+|||||||++||++.|+..+-|..+++++|++.|..+|
T Consensus 69 h~--~~~~~~l~r~--~l~~~g~-----~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IE 139 (333)
T COG2605 69 HK--PLVVESLKRD--FLEFNGG-----TPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIE 139 (333)
T ss_pred Cc--hHHHHHHHHH--HHhhcCC-----CceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 21 2233333321 2222222 3499999999999999999999999999999999999999999999999999
Q ss_pred h-hhCCCCCchhhhhhhhhcCCceEEeecCC---CeeEEeecCC------CcEEEEEeCCCcccccccccccchhHHHHH
Q 010850 203 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNP---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVEC 272 (499)
Q Consensus 203 ~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~---~~~~~i~~p~------~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~ 272 (499)
+ .++..+|.|||++++|||++ |++|.+ ..+.++++.. ..+++++++|+.+..
T Consensus 140 R~~l~~~gG~QDqYaaA~GGFn---fMEf~~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~S--------------- 201 (333)
T COG2605 140 REDLKIVGGKQDQYAAAFGGFN---FMEFRGNGEVVVNPLRINRERTAELEARLLLYYTGITRQS--------------- 201 (333)
T ss_pred HHHhccccccccHHHHHhCCce---EEEEcCCCcEEEeecccchhHHHHHHhceEEEEeccccch---------------
Confidence 7 78999999999999999975 667654 3455555432 356666666654221
Q ss_pred HHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCc
Q 010850 273 RLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSS 352 (499)
Q Consensus 273 ~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 352 (499)
+.++ ..+++.....+ ++.
T Consensus 202 ---s~V~-------------------------------------~dQ~~~~~~~~----~~~------------------ 219 (333)
T COG2605 202 ---SEVI-------------------------------------EDQVRNVVDGD----EET------------------ 219 (333)
T ss_pred ---hHHH-------------------------------------HHHHHHhhccc----HHH------------------
Confidence 1111 11222222211 000
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhc-CCCCHHHHHHHHHHHhCC
Q 010850 353 LDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNG 431 (499)
Q Consensus 353 ~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-~vs~peld~lv~~a~~~G 431 (499)
.++.|-+. .-+.++.++|.++ |+..||++|+.+|+..+.+. .+|+|.+|+|++.|++.|
T Consensus 220 -------------~e~~~~mk--~~A~~~~~al~~n-----d~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~G 279 (333)
T COG2605 220 -------------LEALHEMK--ALAYEMKDALVRN-----DIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNG 279 (333)
T ss_pred -------------HHHHHHHH--HHHHHHHHHHHhc-----chHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcC
Confidence 01112111 1234578888875 79999999999999998885 699999999999999999
Q ss_pred CceeEecCcCCcceEEEEEeCCchHHHHHHHHHH
Q 010850 432 ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 465 (499)
Q Consensus 432 a~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~ 465 (499)
|+|+|++|||+||+++.+|++++..+++++|+..
T Consensus 280 A~~gKl~GaG~gGFllf~~~p~k~~~l~r~l~~~ 313 (333)
T COG2605 280 AYGGKLSGAGGGGFLLFFCDPSKRNELARALEKE 313 (333)
T ss_pred chhceeeccCCccEEEEEeCccchHHHHHHHHHh
Confidence 9999999999999999999999999999999763
No 20
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=1e-27 Score=249.87 Aligned_cols=340 Identities=16% Similarity=0.190 Sum_probs=214.9
Q ss_pred EEccceeeeeccccccC-CCeeeEeecccceEEEEEECCCcC--CcceEEEEeCCCCCCc--eeecCCCCc-ccc-----
Q 010850 51 ARCPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHDSKE--AEKVLKIANVSDKYNM--CTYPAEPDQ-EID----- 119 (499)
Q Consensus 51 ~~APgrv~L~GEH~d~~-G~~~l~~AId~~~~v~~~~~~~~~--~~~~i~i~s~~~~~~~--~~~~l~~~~-~~~----- 119 (499)
++||||+.|.|||+|+. |++++.+|++.|+++++++..... ....++|.|.+ |.. +.+...... .++
T Consensus 2 ~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQ--f~~~~~~y~~~~~~~~~~~~~~~ 79 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQ--FSDREWLYKISLNHLTLQSVSAS 79 (454)
T ss_pred cccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCC--CCCCceEEEEecCCccceeeccc
Confidence 68999999999999986 678999999999999997654311 01245666643 432 222221100 000
Q ss_pred -cccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecC-------------------C--------CCCCCCchH
Q 010850 120 -MKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTV-------------------P--------TGSGLSSST 171 (499)
Q Consensus 120 -~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~i-------------------P--------~g~GLGSSa 171 (499)
.....-..|+..+|..+..++...+.......+++|+|.|+. + .+.||||||
T Consensus 80 ~~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSA 159 (454)
T TIGR01219 80 DSRNPFVNPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSA 159 (454)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHH
Confidence 011222368888888888888765432111368999998877 2 269999999
Q ss_pred HHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHhhhhCC-CCCchhhhhhhhhcCCceEEeecCCC----
Q 010850 172 AFVCSSTVALMAAFGVEV-------------PKKEIAQLTCECEQFIGT-QSGGMDQAISIMAKSGFAELIDFNPI---- 233 (499)
Q Consensus 172 A~~va~~~al~~~~~~~l-------------~~~~l~~~a~~~E~~~g~-~~g~~D~~~~~~Gg~~~~~~i~~~~~---- 233 (499)
|++||++.||+.+++..+ +++.+.++|+.+|..+++ ++|+.|.++++||| +.|..|+|.
T Consensus 160 AvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~ 236 (454)
T TIGR01219 160 AMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISF 236 (454)
T ss_pred HHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhh
Confidence 999999999999999876 789999999999986555 78999999999999 577787652
Q ss_pred ------------------------eeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchh
Q 010850 234 ------------------------RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQE 289 (499)
Q Consensus 234 ------------------------~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~ 289 (499)
.++++++|.+++++|.|++.+++|
T Consensus 237 ~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~~l~Llvgdtg~~ssT-------------------------------- 284 (454)
T TIGR01219 237 LQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPPLMNLFMGDPGGGSST-------------------------------- 284 (454)
T ss_pred hhccccccchhhhHHHHhccCCCCceeeccCCCCCEEEEEcCCCCcCc--------------------------------
Confidence 222445556677777777665443
Q ss_pred hhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhh--hhhhhhhhhh
Q 010850 290 AISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLN--AAKQYKLHQR 367 (499)
Q Consensus 290 ~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r 367 (499)
.+||+.|+++..+.+...+.+.+.++..-..++ ..+..++ .+++...|.
T Consensus 285 ------------------------~~lV~~V~~~~~~~p~~s~~i~~~l~~aN~~~~----~~l~~l~~~~~~~~~~y~- 335 (454)
T TIGR01219 285 ------------------------PSMVGKVKKWQMSDPEESRENWQNLSDANLELE----TKLNDLSKLAKDHWDVYL- 335 (454)
T ss_pred ------------------------HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhccccchhh-
Confidence 345555555544443222222221111100000 0000000 000000011
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhHhhhhhc-----CCCCHHHHHHHHHHHh-CCCceeEec
Q 010850 368 AAHVYSEAKRVHAFKDTVSSNLS---EEDKLKKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRN-NGALGARLT 438 (499)
Q Consensus 368 ~~~~i~E~~rv~~~~~al~~~~~---~~~d~~~lg~lm~~sh~~lr~~~-----~vs~peld~lv~~a~~-~Ga~Gakls 438 (499)
.+++.+.++.. ...++..+.+.|.++...||.+. .|-+|++..|++.+.+ .||+|||.+
T Consensus 336 ------------~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vp 403 (454)
T TIGR01219 336 ------------RVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVP 403 (454)
T ss_pred ------------hhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecC
Confidence 11222222100 01157788888988888887764 4669999999999988 699999999
Q ss_pred CcCCcceEEEEEeCCchHHHHHHHHHHHHhcc
Q 010850 439 GAGWGGCVVALVKESIDSQFILNLKEQFYQSR 470 (499)
Q Consensus 439 GaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~ 470 (499)
|||||+|+++|+.++. ++.+.+.+.|...+
T Consensus 404 GAGGgDa~~~l~~~~~--~~~~~~~~~W~~~~ 433 (454)
T TIGR01219 404 GAGGFDAIFAITLGDV--DSGTKLTQAWSSHN 433 (454)
T ss_pred CCCccceEEEEecCCh--HHHHHHHHHHhhCC
Confidence 9999999999986643 24455555554433
No 21
>PLN02451 homoserine kinase
Probab=99.96 E-value=1.8e-27 Score=244.95 Aligned_cols=306 Identities=20% Similarity=0.264 Sum_probs=214.4
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecc-cceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCcc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIR-QDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWG 126 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId-~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (499)
.+.++||+++.++| +|++++++|+| +|.++.+++.++.. .+.+.|..... . ...++.+ .-.
T Consensus 53 ~~~~~aPA~~ANLG-----pgfD~lG~a~d~l~d~v~~~~~~~~~-~~~~~i~~~~g-~-~~~l~~~----------~~~ 114 (370)
T PLN02451 53 SVKAFAPATVANLG-----PGFDFLGCAVDGLGDFVTARVDPGVR-PGEVSISEITG-D-TGRLSKD----------PLR 114 (370)
T ss_pred eEEEEeccchhhcc-----cChhhhhhhhccCcCEEEEEECCCCC-cccEEEEEecc-c-cccCCCC----------ccc
Confidence 47899999998888 99999999999 99999998764200 02366653211 0 0111111 112
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC
Q 010850 127 HYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 206 (499)
Q Consensus 127 ~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g 206 (499)
|.+..+++ ..++..+.. +.|++|+|.++||+++|||||||+++|++.+++.+++.++++++++++|.++|..+.
T Consensus 115 Nlv~~a~~---~~~~~~g~~---~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~ 188 (370)
T PLN02451 115 NCAGIAAI---ATMKLLGIR---SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVS 188 (370)
T ss_pred CcHHHHHH---HHHHHcCCC---CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhc
Confidence 66653333 334444542 369999999999999999999999999999999999999999999999999998443
Q ss_pred CCCCchhhhh-hhhhcCCceEEeecCCCeeEEeecC--CCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHh
Q 010850 207 TQSGGMDQAI-SIMAKSGFAELIDFNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 283 (499)
Q Consensus 207 ~~~g~~D~~~-~~~Gg~~~~~~i~~~~~~~~~i~~p--~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~ 283 (499)
+. .+|+++ +++||. ++.....+....++++| .++.+++++|+...+|+. +.
T Consensus 189 g~--h~Dnva~a~~GG~--v~~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~---------------ar------- 242 (370)
T PLN02451 189 GY--HADNIAPALMGGF--VLIRSYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKK---------------MR------- 242 (370)
T ss_pred CC--CccchhHhhcCCE--EEEEecCCCeEEEeecCCCCCeEEEEEcCCCCccHHH---------------HH-------
Confidence 33 379886 689984 33323344556666666 579999999987643221 00
Q ss_pred CCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhh
Q 010850 284 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 363 (499)
Q Consensus 284 g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (499)
+.++.. +..
T Consensus 243 --------------------------------------~~lp~~-~~~-------------------------------- 251 (370)
T PLN02451 243 --------------------------------------AALPKE-IPM-------------------------------- 251 (370)
T ss_pred --------------------------------------HHHhhh-cch--------------------------------
Confidence 001000 000
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--hHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcC
Q 010850 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAG 441 (499)
Q Consensus 364 ~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~s--h~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG 441 (499)
..++ ....++..++.+|.++ |++.++++|++. |+..+. .++|+++++++.+++.|++|++|||+|
T Consensus 252 ----~~~v-~~~~~~~~l~~al~~~-----d~~~l~~~m~nD~~~e~~r~---~~~P~l~~l~~~~~~~GA~ga~mSGSG 318 (370)
T PLN02451 252 ----KHHV-WNCSQAAALVAAILQG-----DAVLLGEALSSDKIVEPTRA---PLIPGMEAVKKAALEAGAYGCTISGAG 318 (370)
T ss_pred ----hhHH-HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhHHHHh---hhCccHHHHHHHHHHCCCeEEEEEccc
Confidence 0000 0112344567788875 699999999754 666664 459999999999999999999999888
Q ss_pred CcceEEEEEeC-CchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 010850 442 WGGCVVALVKE-SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 498 (499)
Q Consensus 442 ~GG~viaL~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 498 (499)
+|+++|+++ +.++++.+++++.|.+... ....++++++++ |+++..
T Consensus 319 --ptvfal~~~~~~a~~i~~~l~~~~~~~~~---------~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 319 --PTAVAVIDDEEKGEEVGERMVEAFRKAGN---------LKATASVKKLDRVGARLVE 366 (370)
T ss_pred --hheEEEEcCHHHHHHHHHHHHHHHHHhcC---------CCceEEEeccCCCCeEEEe
Confidence 799999975 4688999999887755432 356899999987 998853
No 22
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.2e-26 Score=228.28 Aligned_cols=291 Identities=25% Similarity=0.324 Sum_probs=211.9
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
.+++++|+...++| .|++++++|++++..+.+....+ .++|..... + ...++++ ..|
T Consensus 3 ~~~v~aPASSANlG-----pGFD~lGlAl~~~~~~~v~~~~~-----~~~i~~~g~-~-~~~iP~~-----------~~n 59 (299)
T COG0083 3 MMKVRVPASSANLG-----PGFDVLGLALDLYNDVVVVEVVD-----KFEIEVEGE-G-ADKIPLD-----------PEN 59 (299)
T ss_pred eEEEEEeecccccC-----CCccceeeeccccCcEEEEEecC-----cEEEEEecc-c-ccCCCCC-----------cce
Confidence 46799999999999 99999999999999888876664 244433221 1 0112222 113
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT 207 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~ 207 (499)
.+. +.+...+++.+.. .++++.++++||.++|||||+|.+||.+.+++++++.+++++++.+++...|.
T Consensus 60 ~~~---~~~~~~~~~~~~~----~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg---- 128 (299)
T COG0083 60 LVY---QAALKFLEALGIE----AGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG---- 128 (299)
T ss_pred eHH---HHHHHHHHHhCCC----ccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC----
Confidence 333 3444556666664 35999999999999999999999999999999999999999999999999995
Q ss_pred CCCchhhhh-hhhhcCCceEEeec-CCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCC
Q 010850 208 QSGGMDQAI-SIMAKSGFAELIDF-NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 285 (499)
Q Consensus 208 ~~g~~D~~~-~~~Gg~~~~~~i~~-~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~ 285 (499)
--|+++ |++||. .+... .+....++++|.+|.++++.|+++.+|.
T Consensus 129 ---HpDNVapa~lGG~---~l~~~~~~~~~~~v~~~~~~~~v~~iP~~e~sT~--------------------------- 175 (299)
T COG0083 129 ---HPDNVAPAVLGGL---VLVEEESGIISVKVPFPSDLKLVVVIPNFEVSTA--------------------------- 175 (299)
T ss_pred ---CCchHHHHhhCCE---EEEeecCCceEEEccCCcceEEEEEeCCccccHH---------------------------
Confidence 237665 899993 33332 4567778888889999999998764321
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhh
Q 010850 286 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 365 (499)
Q Consensus 286 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (499)
+ .|+.|+++ +++++.
T Consensus 176 ---~------------------------------aR~vLP~~-~~~~da------------------------------- 190 (299)
T COG0083 176 ---E------------------------------ARKVLPKS-YSRKDA------------------------------- 190 (299)
T ss_pred ---H------------------------------HHHhcccc-CCHHHH-------------------------------
Confidence 1 13344433 433221
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcc
Q 010850 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN-DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 444 (499)
Q Consensus 366 ~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~-~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG 444 (499)
+....|+.-++.||.++ |.+.+..+|. .-|+.+|..+ .|.++++.+.+.+.|+||+.+|||| +
T Consensus 191 ------V~n~s~~a~lv~al~~~-----~~~l~~~~~~D~ihepyR~~L---~P~~~~v~~~a~~~gA~g~~lSGAG--P 254 (299)
T COG0083 191 ------VFNLSRAALLVAALLEG-----DPELLRAMMKDVIHEPYRAKL---VPGYAEVREAALEAGALGATLSGAG--P 254 (299)
T ss_pred ------HHHHHHHHHHHHHHHcC-----CHHHHHHHhccccchhhhhhh---CccHHHHHHHHhhCCceEEEEecCC--C
Confidence 12335677789999986 6777777775 5899999887 9999999999999999999999999 8
Q ss_pred eEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe-eCCCceeec
Q 010850 445 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKF 497 (499)
Q Consensus 445 ~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~ 497 (499)
++++++++. .++....+.+.+++..+ ...++++ .+++|++++
T Consensus 255 Ti~al~~~~-~~e~~~~~~~~~~~~~~----------~~~~~~~~~~~~G~~~v 297 (299)
T COG0083 255 TVFALADES-DAEKAAALLEELYEQGI----------KGRVHILALDSDGARVV 297 (299)
T ss_pred eEEEEeccc-hhhHHHHHHHHHHHhCC----------cceEEEEeecCCcceEe
Confidence 999999877 43444444455555543 4456644 456697765
No 23
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=1.4e-26 Score=232.00 Aligned_cols=263 Identities=16% Similarity=0.221 Sum_probs=185.9
Q ss_pred eEEEccceeee----eccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L----~GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.++||||||| +|+|.| |+...+|.+||++++++++++..+ ..+++..... .. ..
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~----~~~~i~~~~~-----~~-----------~~ 62 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKE----DGIVVESNNR-----YV-----------PN 62 (286)
T ss_pred EEEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCC----CCEEEEeCCC-----CC-----------CC
Confidence 56899999999 799999 777899999999999999998765 4466643211 00 11
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
.+.|++..+++. .++..+. ..|++|+|.++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 63 ~~~n~~~~~~~~---~~~~~~~----~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g- 134 (286)
T PRK00128 63 DERNLAYKAAKL---LKERYNI----KQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG- 134 (286)
T ss_pred CCCcHHHHHHHH---HHHhcCC----CCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC-
Confidence 244666433332 2333343 36899999999999999999999999999999999999999999999998874
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHh
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 283 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~ 283 (499)
.|..++++||. .+.........+++.+++..+++++|+...+|..
T Consensus 135 --------~dv~~~~~Gg~---~~~~~~g~~~~~~~~~~~~~~vv~~p~~~~~T~~------------------------ 179 (286)
T PRK00128 135 --------SDVPFCIYGGT---ALATGRGEKITPLKSPPSCWVVLAKPDIGVSTKD------------------------ 179 (286)
T ss_pred --------CCCCeEeeCCe---EEEecCCcccccCCCCCCcEEEEEcCCCCCCHHH------------------------
Confidence 38888899984 3344443445555555678899999986432210
Q ss_pred CCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhh
Q 010850 284 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 363 (499)
Q Consensus 284 g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (499)
. ++.++..
T Consensus 180 ------~------------------------------~~~~~~~------------------------------------ 187 (286)
T PRK00128 180 ------V------------------------------YKNLDLD------------------------------------ 187 (286)
T ss_pred ------H------------------------------HhcCccc------------------------------------
Confidence 0 0000000
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCC-CCHHHHHHHHHHHhCCCceeEecCcCC
Q 010850 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGW 442 (499)
Q Consensus 364 ~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~v-s~peld~lv~~a~~~Ga~GaklsGaG~ 442 (499)
+.. ...+..+..++.++ |++.++++|+..-+.+ .+ .+|+++++++.+++.|++|++|||+|
T Consensus 188 ---~~~-----~~~~~~~~~~l~~~-----d~~~~~~~~~n~l~~~----~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG- 249 (286)
T PRK00128 188 ---KIS-----HPDTEKLIEAIEEG-----DYQGICANMGNVLENV----TLKKYPEIAKIKERMLKFGADGALMSGSG- 249 (286)
T ss_pred ---ccc-----CcchHHHHHHHhcC-----CHHHHHHhccCcHHHH----HHhhChHHHHHHHHHHhcCCCeeEEcccC-
Confidence 000 00122345666665 6999999886322222 33 38999999999999999999999888
Q ss_pred cceEEEEEeC-CchHHHHHHHHHH
Q 010850 443 GGCVVALVKE-SIDSQFILNLKEQ 465 (499)
Q Consensus 443 GG~viaL~~~-~~~~~~~~~l~~~ 465 (499)
+|+++|+++ ++++++.+++++.
T Consensus 250 -~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 250 -PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred -ccEEEEeCCHHHHHHHHHHhHhh
Confidence 999999976 4567777777643
No 24
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.95 E-value=8.9e-26 Score=228.78 Aligned_cols=299 Identities=17% Similarity=0.244 Sum_probs=202.0
Q ss_pred CeEEEccceeee----eccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccccccc
Q 010850 48 DVYARCPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH 122 (499)
Q Consensus 48 ~~~~~APgrv~L----~GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (499)
.++++||||||| .|+|.| |+...++.++||++.++.+++.++ ..+.+.+... .++.
T Consensus 3 ~~~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~----~~~~~~~~~~-----~~~~---------- 63 (312)
T PRK02534 3 SYTLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGD----GTIRLHCDHP-----QLST---------- 63 (312)
T ss_pred eEEEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCC----CcEEEEECCC-----CCCC----------
Confidence 366899999999 799999 777788889999999999988766 4566643211 1111
Q ss_pred CCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 010850 123 HQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202 (499)
Q Consensus 123 ~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E 202 (499)
+..|++..+++. .+.+.+.. ..|++|+|.++||.++|||||||+++|++.+++.+++.+++.++++++|.++|
T Consensus 64 -~~~n~~~~~~~~---~~~~~~~~---~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g 136 (312)
T PRK02534 64 -DDDNLIYRAAQL---LRKRFPFA---EGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG 136 (312)
T ss_pred -CchhHHHHHHHH---HHHHhCCC---CCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 123566433332 22233432 25899999999999999999999999999999999999999999999998874
Q ss_pred hhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEE-eCCCcccccccccccchhHHHHHHHHHHHHHH
Q 010850 203 QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAI 281 (499)
Q Consensus 203 ~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~-~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~ 281 (499)
.|..++++||. .+.........+++.|+++.++++ +|+...+|... | +
T Consensus 137 ---------~dv~~~~~GG~---~~~~~~g~~~~~~~~~~~~~~vv~~~p~~~~~T~~a----~-----------~---- 185 (312)
T PRK02534 137 ---------SDVPFCIAGGT---QLCFGRGEILEPLPDLDGLGVVLAKYPSLSVSTPWA----Y-----------K---- 185 (312)
T ss_pred ---------CCCcEEeECCe---EEEECCCCEeEECCCCCCcEEEEEECCCCCccHHHH----H-----------H----
Confidence 27777899984 222223344667777778999887 78875332110 0 0
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhh
Q 010850 282 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 361 (499)
Q Consensus 282 ~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (499)
.+++.+++. +...+.
T Consensus 186 -------------------------------------~~~~~~~~~-~~~~~~--------------------------- 200 (312)
T PRK02534 186 -------------------------------------TYRQQFGDT-YLSDEE--------------------------- 200 (312)
T ss_pred -------------------------------------HHhhhcccc-cccCcc---------------------------
Confidence 001111110 000000
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHH-hCCCceeEecCc
Q 010850 362 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGA 440 (499)
Q Consensus 362 ~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~-~~Ga~GaklsGa 440 (499)
..+.. ....+...+..+|.++ |++.+++.| |+.+|....-..|++.++++.++ +.|++|+.|||+
T Consensus 201 --~~~~~----~~~~~~~~l~~al~~~-----d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGs 266 (312)
T PRK02534 201 --DFEQR----RQALRSGPLLQAISAK-----DPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGS 266 (312)
T ss_pred --ccccc----ccccchhHHHHhhhcc-----CHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECc
Confidence 00000 0112333456777765 688888766 56666654336899999999888 899999999977
Q ss_pred CCcceEEEEEeC-CchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 010850 441 GWGGCVVALVKE-SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 496 (499)
Q Consensus 441 G~GG~viaL~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 496 (499)
| +|+++|+++ +.++++.+++++.+... ...++++++.+ |++|
T Consensus 267 G--ptv~~l~~~~~~a~~~~~~l~~~~~~~------------~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 267 G--PTCFALFESQEQAEQALEQVREAFADP------------GLDAWVCQFISHGIQL 310 (312)
T ss_pred C--cceEEEeCCHHHHHHHHHHHHHHhccC------------ceEEEEEEecCCCcee
Confidence 7 999999976 36777888886654321 22688888877 9876
No 25
>PRK01212 homoserine kinase; Provisional
Probab=99.95 E-value=3.6e-25 Score=223.42 Aligned_cols=296 Identities=23% Similarity=0.276 Sum_probs=205.2
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
.+.+++|++...+| .|++++++|++.|.++++++.++......+.+..... ..++.+ + -.|
T Consensus 3 ~~~v~~pat~anlg-----~gfd~lG~al~~~d~l~~~~~~~~~~~~~~~~~~~~~----~~~p~~-------~---~~N 63 (301)
T PRK01212 3 MVKVRVPATSANLG-----PGFDSLGLALSLYDEVLVGDVVSVEAEFSIEVIGEGA----DKLPLD-------P---EKN 63 (301)
T ss_pred eEEEEEecchhhcc-----cChhhhhccccCccEEEEEEccCCCCceEEEEEecCC----CcCCCC-------C---ccc
Confidence 36799999999999 9999999999999999998754300001133432110 011110 0 125
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT 207 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~ 207 (499)
.+..+++. +++..+. ..|++|.|.++||.++|||||||.++|++.+++++++.+++.++++++|.++|.
T Consensus 64 li~~a~~~---~~~~~~~----~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~---- 132 (301)
T PRK01212 64 LVYQAALK---FLEKLGK----PPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG---- 132 (301)
T ss_pred cHHHHHHH---HHHHcCC----CCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----
Confidence 55433332 2333453 268999999999999999999999999999999999999999999999999985
Q ss_pred CCCchhhhhhhhhcCCceEEe-ecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCC
Q 010850 208 QSGGMDQAISIMAKSGFAELI-DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 286 (499)
Q Consensus 208 ~~g~~D~~~~~~Gg~~~~~~i-~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~ 286 (499)
..-|...+++||. .+. +..+..+.+++.|+++.+++++|+...+|.. +
T Consensus 133 --~~ddv~~~l~GG~---~~~~~g~g~~~~~~~~~~~~~~vlv~p~~~~sT~~---------------a----------- 181 (301)
T PRK01212 133 --HPDNVAPALLGGL---VLALEENGVISVKIPVFDDLKWVVAIPNIELSTAE---------------A----------- 181 (301)
T ss_pred --CHHHHHHHHhCCE---EEEEECCceEEEEecCCCCeEEEEEECCCcCCHHH---------------H-----------
Confidence 1234556899984 333 3445667788777789999999976432210 0
Q ss_pred chhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhh
Q 010850 287 PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQ 366 (499)
Q Consensus 287 ~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (499)
++.+++. +...
T Consensus 182 ----------------------------------~~~l~~~-~~~~---------------------------------- 192 (301)
T PRK01212 182 ----------------------------------RAVLPKQ-YSLK---------------------------------- 192 (301)
T ss_pred ----------------------------------HHhCcCc-CCHH----------------------------------
Confidence 0001100 0100
Q ss_pred hHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcce
Q 010850 367 RAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN-DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 445 (499)
Q Consensus 367 r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~-~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~ 445 (499)
+.+.+..|+..+..+|.++ |++.++++|+ ..|+.++.. .+|+++.+++.+++.|++|++|||+| +|
T Consensus 193 ---~~~~~~~~~~~l~~al~~~-----d~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--pt 259 (301)
T PRK01212 193 ---DAVFNSSRAALLVAALYTG-----DYELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PT 259 (301)
T ss_pred ---HHHHHHHHHHHHHHHHhhC-----CHHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hh
Confidence 0011223455577888875 6999999984 356666543 27999999999999999999999887 89
Q ss_pred EEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 010850 446 VVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 497 (499)
Q Consensus 446 viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 497 (499)
+++|++++..+++.+++++.| ..+ .+..++++++++ |++++
T Consensus 260 v~~l~~~~~~~~~~~~l~~~~-~~~----------~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 260 VFALCDKEDAEKVADALQKAF-LQG----------IEGFVHVLRLDTAGARVL 301 (301)
T ss_pred eeEEeccccHHHHHHHHHHhh-ccC----------CCeEEEEeccCCCceEeC
Confidence 999998765588888888766 222 256899999988 98874
No 26
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.94 E-value=1.1e-24 Score=219.73 Aligned_cols=291 Identities=19% Similarity=0.256 Sum_probs=191.9
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccceEEEEEEC----CCcCCcceEEEEeCCCCCCceeecCCCCcccccccCC
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKH----DSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ 124 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~----~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (499)
+.+++|+...++| +|++++++|+++|.++++... .. ...+.+..... ..++.+ +
T Consensus 1 ~~v~vpatsaNlg-----~GfD~lg~al~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~p~~-------~--- 58 (302)
T TIGR00191 1 FRVKVPASSANLG-----PGFDVLGAALSLYLGLTVTDVVAQESD---DTEIEAEGEGV----EKIPTE-------P--- 58 (302)
T ss_pred CEEEEecchhccc-----cChhhhhhhccccceEEEEeeecccCC---CceEEEEeccc----ccCCCC-------c---
Confidence 3689999999999 999999999999999988752 22 01244432110 011111 0
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 010850 125 WGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 204 (499)
Q Consensus 125 ~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~ 204 (499)
-.|.+..+++. .++..+.. ..|++|.+.++||+++|||||||.++|++.+++++++.++++++++++|.++|.
T Consensus 59 ~~Nlv~~a~~~---~~~~~g~~---~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~- 131 (302)
T TIGR00191 59 TDNLIYQVAKR---FLDQLGIR---MPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG- 131 (302)
T ss_pred ccccHHHHHHH---HHHHcCCC---CCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-
Confidence 12566533332 33444542 158999999999999999999999999999999999999999999999999985
Q ss_pred hCCCCCchhh-hhhhhhcCCceEEeecCCCeeEEeecC--CCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHH
Q 010850 205 IGTQSGGMDQ-AISIMAKSGFAELIDFNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 281 (499)
Q Consensus 205 ~g~~~g~~D~-~~~~~Gg~~~~~~i~~~~~~~~~i~~p--~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~ 281 (499)
-.|+ .++++||. .+.........++++| +++.+++++|+...+|.. +
T Consensus 132 ------h~Dnv~~~l~GG~---~~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~---------------a------ 181 (302)
T TIGR00191 132 ------HPDNVAPALLGGF---QLAFVEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAE---------------A------ 181 (302)
T ss_pred ------CcccHHHHhccCE---EEEEEcCCceEEEEeCCCCCEEEEEEECCCcccHHH---------------H------
Confidence 1575 55889984 3333333334444444 689999999987543211 0
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhh
Q 010850 282 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 361 (499)
Q Consensus 282 ~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (499)
++.+++. ++..+.
T Consensus 182 ---------------------------------------~~~lp~~-~~~~~~--------------------------- 194 (302)
T TIGR00191 182 ---------------------------------------RAVLPKA-YPRQDL--------------------------- 194 (302)
T ss_pred ---------------------------------------HHhCccc-CCHHHH---------------------------
Confidence 0111110 111000
Q ss_pred hhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--hHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecC
Q 010850 362 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTG 439 (499)
Q Consensus 362 ~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~s--h~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsG 439 (499)
+....++..++.+|.++ ++ .+++.+.+. |+.+|.. .+|+++.+++.+++.|++|++|||
T Consensus 195 ----------v~~~~~~~~l~~al~~~-----~~-~l~~~~~~d~l~e~~~~~---l~p~l~~i~~~~~~~Ga~g~~lSG 255 (302)
T TIGR00191 195 ----------VFNLSHLAGLVHAIYQK-----KP-DLGAIMMKDRIHQPYRES---LIPNLFKIKQAALEKGAYGITISG 255 (302)
T ss_pred ----------HHHHHHHHHHHHHHHcC-----CH-HHHHHHcccccchhhHhh---hCCCHHHHHHHHHHCCCeEEEEEc
Confidence 00112233355677764 34 456666443 6777754 499999999999999999999998
Q ss_pred cCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 010850 440 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 496 (499)
Q Consensus 440 aG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 496 (499)
+| +|+++|++++...+.+.++.+.++..+ .+..++++.+++ |+++
T Consensus 256 sG--ptv~al~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 256 SG--PTILAMADEEFAEQKEQDLLEVLHKQG----------IEGTVHVLDFDNDGARV 301 (302)
T ss_pred hh--hhheEEecchhhHHHHHHHHHHHHhcC----------CCeEEEEcccCCCCeEe
Confidence 88 899999987654443333333443322 256899999988 9876
No 27
>PTZ00299 homoserine kinase; Provisional
Probab=99.94 E-value=1.1e-24 Score=220.73 Aligned_cols=294 Identities=19% Similarity=0.195 Sum_probs=207.0
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
.+.+++|+...++| +|+++|++|+++|.++.+++.+. ..+++.... ...++. +-.|
T Consensus 7 ~~~v~vPATsANlG-----pGFDsLGlAL~lyd~v~v~~~~~----~~i~i~G~~----~~~lp~-----------~~~n 62 (336)
T PTZ00299 7 KVVLRVPATTANIG-----PAYDTLGMALSIFMELTVEHADA----FSMTVEGEG----SEHIST-----------DEDN 62 (336)
T ss_pred eEEEEEeccccccc-----ccHHHHhhhcccCcEEEEEECCC----CEEEEecCC----cCCCCC-----------Ccch
Confidence 37899999999999 99999999999999999987554 345553211 011111 1124
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHhhh
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQF 204 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~---~~~l~~~a~~~E~~ 204 (499)
.+.. .+...+...+.. ...|+++.+.++||+++|||||||.++|.+.+++++++.+++ +++++++|..+|-
T Consensus 63 lv~~---a~~~~~~~~~~~--~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG- 136 (336)
T PTZ00299 63 MVVQ---ACRLAFEEYAHK--SMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG- 136 (336)
T ss_pred HHHH---HHHHHHHHhcCC--CCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC-
Confidence 5543 333333333321 125899999999999999999999999999999999999995 7999999999883
Q ss_pred hCCCCCchhhh-hhhhhcCCceEEeec-CC--CeeEEeecCCCcEEEEEeCCCc--ccccccccccchhHHHHHHHHHHH
Q 010850 205 IGTQSGGMDQA-ISIMAKSGFAELIDF-NP--IRTTDVQLPAGGTFVVAHSLAE--SLKAITAASNYNNRVVECRLTAIV 278 (499)
Q Consensus 205 ~g~~~g~~D~~-~~~~Gg~~~~~~i~~-~~--~~~~~i~~p~~~~~vl~~s~~~--~~~~~~~~~~y~~r~~e~~~a~~~ 278 (499)
-.|++ .+++||. ..... .+ ....+++.|+++.++++.|+.. .+|.
T Consensus 137 ------HpDNVapal~GG~---~~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~~~sT~-------------------- 187 (336)
T PTZ00299 137 ------HPDNAAPAIYGGI---QLVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKMKANTH-------------------- 187 (336)
T ss_pred ------CcccHHHHHhCCE---EEEEecCCCceEEEecCCCCCeEEEEEECCCCccccHH--------------------
Confidence 24744 5899994 22222 22 2344667777899999999752 1110
Q ss_pred HHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhh
Q 010850 279 LAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNA 358 (499)
Q Consensus 279 l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 358 (499)
+ -|+.+++. ++.++
T Consensus 188 ----------~------------------------------aR~vLP~~-v~~~d------------------------- 201 (336)
T PTZ00299 188 ----------V------------------------------TRNLIPTS-VSLED------------------------- 201 (336)
T ss_pred ----------H------------------------------HHhhCccc-CcHHH-------------------------
Confidence 0 02222221 21110
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhh-hcCCCCHHHHHHHHHHHhCCCceeEe
Q 010850 359 AKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV-LYECSCPELEELVNVCRNNGALGARL 437 (499)
Q Consensus 359 ~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~-~~~vs~peld~lv~~a~~~Ga~Gakl 437 (499)
.+....|+..++.+|.++ |++.+..+.+..|+.+|. .. .|+++.+.+.+.+.|++|+.|
T Consensus 202 ------------av~n~~~~~~lv~al~~~-----d~~ll~~~~D~lhep~R~~~l---iP~~~~v~~~~~~~Ga~g~~l 261 (336)
T PTZ00299 202 ------------AVFNISRTSILVLALSTG-----DLRMLKSCSDKLHEQQRSDAL---FPHFRPCVKAAREAGAHYAFL 261 (336)
T ss_pred ------------HHHhhhHHHHHHHHHHhC-----CHHHHHhchhcccCccccccc---CccHHHHHHHHHHCCCeEEEE
Confidence 011223444567888876 688886644558888885 43 899999999999999999999
Q ss_pred cCcCCcceEEEEEeC------------CchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 010850 438 TGAGWGGCVVALVKE------------SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 498 (499)
Q Consensus 438 sGaG~GG~viaL~~~------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 498 (499)
|||| +++++|++. +..+++.+++.+.|.+.+ +...++++.++. |+++.+
T Consensus 262 SGSG--PTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------~~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 262 SGAG--PSVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVG----------VAGRVIITQPSDQGVHLVG 323 (336)
T ss_pred Echh--hhheEEeccccccccccccchhHHHHHHHHHHHHHHHcC----------CceEEEEccCCCCCcEEEe
Confidence 9999 999999972 236789999988886554 367899999988 999864
No 28
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.93 E-value=1.3e-23 Score=210.82 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=125.6
Q ss_pred EEEccceeeeecccccc-CCCe----eeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCC
Q 010850 50 YARCPGRVNLIGEHIDY-EGYS----VLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ 124 (499)
Q Consensus 50 ~~~APgrv~L~GEH~d~-~G~~----~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (499)
+++|||||||+|+|+++ .+|. ++.++|+++.++.+++.++ ..+++.+.+. .++ . .
T Consensus 3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~----~~i~~~~~~~-------~~~------~--~- 62 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSD----DDIRLLKGDF-------DVP------L--E- 62 (293)
T ss_pred eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCC----CcEEEeeCCC-------CCC------C--C-
Confidence 46899999999999987 4444 9999999999999988776 5566654211 111 0 1
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 010850 125 WGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 204 (499)
Q Consensus 125 ~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~ 204 (499)
.|++..+++.+.+.+ +.......|+++.|.++||.++|||||||.++|++.+++++++.++++++++++|..++
T Consensus 63 -~nlv~~a~~~l~~~~---~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg-- 136 (293)
T TIGR00154 63 -ENLIYRAAQLLKNFA---NSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG-- 136 (293)
T ss_pred -CcHHHHHHHHHHHHh---cccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--
Confidence 177764444333222 21000136999999999999999999999999999999999999999999999998873
Q ss_pred hCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 205 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 205 ~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
.|...+++||. .+.........+++.++++.+++++|+...+
T Consensus 137 -------~Dv~~~~~gg~---~~~~g~ge~~~~l~~~~~~~~vl~~p~~~~s 178 (293)
T TIGR00154 137 -------ADVPFFVSGHA---AFATGVGEIITPFEDPPEKWVVIAKPHVSIS 178 (293)
T ss_pred -------CCcceEEECCe---EEEEecCcEEEECCCCCCcEEEEEcCCCCcC
Confidence 48888889884 3333333344556555678899999987644
No 29
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=2.9e-22 Score=202.11 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=185.9
Q ss_pred EEEccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCC
Q 010850 50 YARCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ 124 (499)
Q Consensus 50 ~~~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (499)
..+||+||||+ |..-|-|+ -..+.+||++|.++.+++.+. ..+.+.... ... ++ ..
T Consensus 2 ~~~a~aKiNl~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~----~~i~~~~~~----~~~--~~------~~--- 62 (300)
T PRK03188 2 TVRAPAKVNLHLGVGPLRDDGYHELATVFQAVSLYDEVTVTAADV----LSVEVSGEG----ADQ--VP------TD--- 62 (300)
T ss_pred eEeecceEEEeeccCCcCCCCccchHhhheehhhccEEEEEECCC----cEEEEecCC----ccC--CC------CC---
Confidence 46899999995 66666555 358999999999999987543 334443211 000 11 00
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 010850 125 WGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 204 (499)
Q Consensus 125 ~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~ 204 (499)
-.|.+..+++.+ ++..+. ..+++|+|+++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 63 ~~nl~~~~~~~~---~~~~~~----~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig-- 133 (300)
T PRK03188 63 ESNLAWRAAELL---AEHVGR----APDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG-- 133 (300)
T ss_pred CccHHHHHHHHH---HHHhCC----CCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--
Confidence 124443333322 233343 36899999999999999999999999999999999999999999999998863
Q ss_pred hCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhC
Q 010850 205 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 284 (499)
Q Consensus 205 ~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g 284 (499)
.|..++++||. .+.........++..+.++.++++.++...+++. .|+
T Consensus 134 -------~dv~~~~~GG~---~~~~~~g~~~~~~~~~~~~~~~lv~p~~~~sT~~----~~~------------------ 181 (300)
T PRK03188 134 -------SDVPFALLGGT---ALGTGRGEQLAPVLARGTFHWVLAFADGGLSTPA----VFR------------------ 181 (300)
T ss_pred -------CCcchhhcCCe---EEEEecCCEEEECCCCCCcEEEEEeCCCCCCHHH----HHH------------------
Confidence 47778899984 3444343445555555566666666654221110 000
Q ss_pred CCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhh
Q 010850 285 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 364 (499)
Q Consensus 285 ~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (499)
.++....... +
T Consensus 182 ----------------------------------~l~~~~~~~~-----~------------------------------ 192 (300)
T PRK03188 182 ----------------------------------ELDRLREAGD-----P------------------------------ 192 (300)
T ss_pred ----------------------------------hchhhhcccc-----c------------------------------
Confidence 0000000000 0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcc
Q 010850 365 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 444 (499)
Q Consensus 365 ~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG 444 (499)
. ...++..+..++.++ |++.+|++|+...+..+-. .+|+++++++.+++.|++|++|||+| +
T Consensus 193 ~--------~~~~~~~~~~al~~~-----d~~~l~~~~~n~le~~~~~---~~p~l~~l~~~~~~~Galga~lSGsG--~ 254 (300)
T PRK03188 193 P--------RLGEPDPLLAALRAG-----DPAQLAPLLGNDLQAAALS---LRPSLRRTLRAGEEAGALAGIVSGSG--P 254 (300)
T ss_pred c--------ccccHHHHHHHHHcC-----CHHHHHHHhhCcCHHHHHH---hCchHHHHHHHHHHCCCCEEEEEccc--c
Confidence 0 001234456777775 6999999996433333221 39999999999999999999999888 6
Q ss_pred eEEEEEeC-CchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 010850 445 CVVALVKE-SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 498 (499)
Q Consensus 445 ~viaL~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 498 (499)
++++|+++ +.++++.+++++ .+ ....++++.+.. |++|.+
T Consensus 255 tv~~l~~~~~~~~~~~~~l~~----~g----------~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 255 TCAFLCADADSAVDVAAALSG----AG----------VCRTVRVATGPVPGARVVS 296 (300)
T ss_pred ceEEEeCCHHHHHHHHHHHHh----cC----------cceeEEEeeccccceEecc
Confidence 68899875 345666666654 22 133677766644 998864
No 30
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.90 E-value=1.7e-21 Score=192.30 Aligned_cols=146 Identities=22% Similarity=0.215 Sum_probs=108.2
Q ss_pred eeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchHHHHHHHHHHHHHH-cCCCCC
Q 010850 70 SVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKA-KGLDVG 148 (499)
Q Consensus 70 ~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~-~~~~~~ 148 (499)
.-.+++||+++++++++.++ ..+.+.+.. . .|++.. ++..+.+ .+.
T Consensus 15 ~g~a~aI~~~~~v~v~~~~~----~~~~~~~~~-----------------~-----~n~i~~----~~~~~~~~~~~--- 61 (261)
T TIGR01920 15 LGGAFGIDLWVEAKVREGDE----AGVSTYVRG-----------------N-----PRLIER----ILTAIRSKFGI--- 61 (261)
T ss_pred cceEEEccCceEEEEEECCC----CceeeeecC-----------------C-----hHHHHH----HHHHHHHhcCC---
Confidence 45678999999999988776 434332210 0 044432 3333333 233
Q ss_pred CCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC--CCCCchhhhhhhhhcCCceE
Q 010850 149 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG--TQSGGMDQAISIMAKSGFAE 226 (499)
Q Consensus 149 ~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g--~~~g~~D~~~~~~Gg~~~~~ 226 (499)
+.|+++++.++||+++|||||||+++|++.+++.+++.++++++++++|.++|+..+ ..+|.+|++++++||+ +
T Consensus 62 -~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~---~ 137 (261)
T TIGR01920 62 -VDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGI---V 137 (261)
T ss_pred -CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCE---E
Confidence 369999999999999999999999999999999999999999999999999998554 6788889999999994 5
Q ss_pred EeecCCCeeE-EeecCCCcEEEEEeCCC
Q 010850 227 LIDFNPIRTT-DVQLPAGGTFVVAHSLA 253 (499)
Q Consensus 227 ~i~~~~~~~~-~i~~p~~~~~vl~~s~~ 253 (499)
+.+..+.... +.++| +..+++++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 138 ITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred EEeCCCceEEEecCCC-CceEEEEECCC
Confidence 5665554333 33433 45788888865
No 31
>PRK01123 shikimate kinase; Provisional
Probab=99.89 E-value=6.9e-21 Score=190.27 Aligned_cols=168 Identities=15% Similarity=0.156 Sum_probs=114.8
Q ss_pred ceeeeeccccccCCC---eeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchHHH
Q 010850 55 GRVNLIGEHIDYEGY---SVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFIC 131 (499)
Q Consensus 55 grv~L~GEH~d~~G~---~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~ 131 (499)
+|....|.-+|++-+ .--+++||+|+++.+++.++ . +.+... +. .+ + ..+ .|++..
T Consensus 3 ~~~~~~gg~~~~~~~~~~~g~~~~i~l~~~v~v~~~~~----~-~~~~~~---~~--~~--~--------~~~-~~~v~~ 61 (282)
T PRK01123 3 GRATALGAGTIINAIATGKGSAFGIDLKTTATVELSDD----G-GGIEGE---IS--GN--P--------DAD-TRLIER 61 (282)
T ss_pred ceEEecchhhhhhhhhcCcccEEEeccEEEEEEEECCC----C-ceeeec---cc--CC--C--------CCC-chHHHH
Confidence 455666777775422 22345999999999987665 2 223211 10 01 0 111 155543
Q ss_pred HHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC--CCC
Q 010850 132 GYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG--TQS 209 (499)
Q Consensus 132 ~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g--~~~ 209 (499)
+++.+ ++..+. ..|++++++++||+++|||||||+++|++.|++++++.++++++++++|..+|+..+ ..+
T Consensus 62 ~~~~~---~~~~~~----~~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g 134 (282)
T PRK01123 62 CVELV---LERFGI----DYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTG 134 (282)
T ss_pred HHHHH---HHHhCC----CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccC
Confidence 33333 333343 259999999999999999999999999999999999999999999999999998543 356
Q ss_pred CchhhhhhhhhcCCceEEeecCCC-eeEEeecCCCcEEEEEeCCCcc
Q 010850 210 GGMDQAISIMAKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAES 255 (499)
Q Consensus 210 g~~D~~~~~~Gg~~~~~~i~~~~~-~~~~i~~p~~~~~vl~~s~~~~ 255 (499)
+..|+++++|||+ ++.+.... ...+++ .++.++|++|+.+.
T Consensus 135 ~~~d~~~~~~GG~---~~~~~~~~~~~~~~~--~~~~~vv~~p~~~~ 176 (282)
T PRK01123 135 AFDDACASYFGGV---TVTDNREMKLLKRDE--VELDVLVLIPPEGA 176 (282)
T ss_pred chhHHHHHHhCCE---EEEcCCCceEEEEec--CCcEEEEEECCCCc
Confidence 7788999999994 44443322 223333 35899999998653
No 32
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.86 E-value=1.9e-19 Score=182.79 Aligned_cols=293 Identities=16% Similarity=0.203 Sum_probs=186.2
Q ss_pred EEEccceeeee-----ccccccCCCeeeEeecc-cceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 50 YARCPGRVNLI-----GEHIDYEGYSVLPMAIR-QDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 50 ~~~APgrv~L~-----GEH~d~~G~~~l~~AId-~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
.+++|+|+.+. |.|-=.+|+ +++||+ .+++|.+++.++ ..+.+.+... .. ++ ..
T Consensus 2 ~v~~~~rlH~g~~d~~~~~gr~~Gg--~G~al~~~~~~v~v~~~~~----~~v~~~~~~g----~~--l~--------~~ 61 (324)
T TIGR00144 2 IINTPSRIHLTLIDLNGSIGRVDGG--VGLALEEPEIVIGLKESDD----MGVEFTSHAE----GK--LG--------EE 61 (324)
T ss_pred eecccccccccccCCCCccCccccc--eEEEEeCCcEEEEEEECCC----ceEEeccccc----cc--cc--------ch
Confidence 58899999762 444434554 455665 457788888766 5565543211 11 11 01
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
.-.|.+..+++ ..++..+. .|++++|.++||.++|||||||+++|.+.|++.+++.+++++++++++.+.|
T Consensus 62 ~~~n~~~~~~~---~~~~~~g~-----~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge- 132 (324)
T TIGR00144 62 YRRSRIMEAAR---KTLKHIGS-----EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG- 132 (324)
T ss_pred hHHHHHHHHHH---HHHHHhCC-----CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC-
Confidence 11244433332 23333342 5899999999999999999999999999999999999999999999998754
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEee---cC---------------CCeeEEeecCCCcEEEEEeCCCcccccccccccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELID---FN---------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNY 265 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~---~~---------------~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y 265 (499)
.++.|.+++++||+ ++.. +. +..+.++++| +|+++++.|+.. .++.
T Consensus 133 -----~s~~~va~~~~GG~---vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~~------ 196 (324)
T TIGR00144 133 -----TSGIGVASFEDGGF---IVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVSG------ 196 (324)
T ss_pred -----CCccceeeeeeCCE---EEECCcccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCCc------
Confidence 33457778999994 3221 11 1225566777 999999999865 2221
Q ss_pred hhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcC-CCCHHHHHHHhhhhhhh
Q 010850 266 NNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKE-PYTALDIEKITEEKLTS 344 (499)
Q Consensus 266 ~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~l~~~~~~~~~~ 344 (499)
.|.. .++ ++. +++.++..
T Consensus 197 -are~------~~l---------------------------------------------p~~~~i~~~dv~--------- 215 (324)
T TIGR00144 197 -RREV------NIF---------------------------------------------QKYCPVPLRDVE--------- 215 (324)
T ss_pred -HHHH------HHH---------------------------------------------HhcCCCCHHHHH---------
Confidence 1110 011 111 12211110
Q ss_pred hhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHH--HHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhc--CCCCHHH
Q 010850 345 IFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV--HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY--ECSCPEL 420 (499)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv--~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~--~vs~pel 420 (499)
+..|+ .+++.+|.++ |++.|++.|++.+..-.+.. +.-.|.+
T Consensus 216 -----------------------------~~~~~~l~~l~~al~~~-----d~~~~~~~l~d~~~~~f~~~~~~~r~~li 261 (324)
T TIGR00144 216 -----------------------------RICHLILMKMMPAVVEG-----DLDAFGESVNEIQGLGFKKIERELQDPLI 261 (324)
T ss_pred -----------------------------HHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhcchhhhccccCHHH
Confidence 11122 3357888875 79999999987443221111 1236667
Q ss_pred HHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 010850 421 EELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 497 (499)
Q Consensus 421 d~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 497 (499)
..+++.+++ ++|+-|||+| +++++|++++ .+++.+++.+.|...+ ....++++.+++ |++|.
T Consensus 262 ~~~~~~l~~--a~g~~iSGsG--PTv~al~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 262 KRIIDSMIS--APGAGMSSFG--PTVYAVTDEK-PGNIAGAVADIFGPYG----------VYGRIIVTKARNRGAFII 324 (324)
T ss_pred HHHHHHHHh--ccCceecCCC--CeEEEEecCc-hHHHHHHHHHHhhhCC----------CceEEEEEccCCCCCEeC
Confidence 776776654 4889999666 9999999754 7778888877664333 356899999986 99873
No 33
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=6.6e-20 Score=183.69 Aligned_cols=266 Identities=15% Similarity=0.180 Sum_probs=172.2
Q ss_pred eEEEccceeeee----ccccccC-CCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNLI----GEHIDYE-GYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L~----GEH~d~~-G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.++||+||||+ |--.|-| .-.++.++|+++.++.+++.++ +.+.... ..+ + .
T Consensus 4 ~~~~a~aKiNL~L~i~~~r~dgyH~l~si~~~i~l~d~v~v~~~~~------~~i~~~~-----~~~--p---------~ 61 (287)
T PRK14616 4 ISVKAFAKINLGLLITGKRPDGYHTLETIFAPINWYDTLTFSPSDT------ISMSCTN-----LDL--P---------V 61 (287)
T ss_pred eEEeeceeEEeeeecCCCCCCCccceeEEEEEcCCCCEEEEEECCC------EEEEeCC-----CCC--C---------C
Confidence 567999999994 5555533 3458889999999999987432 4443211 011 1 0
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
...|.+..+++.+ +...+. ..|++|.|.++||+++|||||||.++|++.+++++++.+++.++++++|.++|.
T Consensus 62 ~~~nl~~~a~~~~---~~~~~~----~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~ 134 (287)
T PRK14616 62 DDSNLCIRAAKAL---QEYAGV----SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA 134 (287)
T ss_pred CccHHHHHHHHHH---HHHhCC----CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC
Confidence 1225554333333 233343 368999999999999999999999999999999999999999999999999853
Q ss_pred hhCCCCCchhhhhhh-hhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHH
Q 010850 204 FIGTQSGGMDQAISI-MAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 282 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~-~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 282 (499)
|..+++ +||. .+........++++.+..+.+++++|+...+|..
T Consensus 135 ---------Dvp~~l~~gg~---~~~~g~g~~~~~~~~~~~~~~vvv~P~~~vsT~~----------------------- 179 (287)
T PRK14616 135 ---------DVPYFLEMKGL---AYATGIGDELEDLQLTLPFHIVTVFPEEHISTVW----------------------- 179 (287)
T ss_pred ---------CcceEeccCCc---EEEEEcCceeEECCcCCCcEEEEECCCCCcCHHH-----------------------
Confidence 533333 3553 2222222334445444457899999987543221
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhh
Q 010850 283 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 362 (499)
Q Consensus 283 ~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (499)
+ ++.+++. +..
T Consensus 180 -------a------------------------------~~~l~~~-~~~------------------------------- 190 (287)
T PRK14616 180 -------A------------------------------YKNFYRR-FER------------------------------- 190 (287)
T ss_pred -------H------------------------------HHHhhhh-ccc-------------------------------
Confidence 0 0000000 000
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCC
Q 010850 363 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGW 442 (499)
Q Consensus 363 ~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~ 442 (499)
...++..++.++... ++++.++.++++- +..|... .|+++.+.+.+++.|++|+.|||+|
T Consensus 191 -----------~~~~~~~l~~~l~~~----~~~~l~~~~~nD~-e~~~~~l---~p~l~~v~~~~~~~Galg~~lSGSG- 250 (287)
T PRK14616 191 -----------ERPDLKTLVRRLCLD----GDTSVLPAFENDF-ESAVFDH---YPAVRKVKDDLLEAGSFFASLSGSG- 250 (287)
T ss_pred -----------CCchHHHHHHHHhcC----CHHHHHHHhcCcc-HHHHHHh---ChHHHHHHHHHHhCCCCeEEEeccc-
Confidence 000111123333321 2466666655554 4455443 8999999999999999999999999
Q ss_pred cceEEEEEeC-CchHHHHHHHHHHHHh
Q 010850 443 GGCVVALVKE-SIDSQFILNLKEQFYQ 468 (499)
Q Consensus 443 GG~viaL~~~-~~~~~~~~~l~~~~~~ 468 (499)
.|+++|+++ ++++++.+.+++.|..
T Consensus 251 -ptv~al~~~~~~a~~i~~~l~~~~~~ 276 (287)
T PRK14616 251 -SAVFGLFENEADAEAAAEMMRARYRT 276 (287)
T ss_pred -ccceEEeCCHHHHHHHHHHhHHhCcc
Confidence 799999976 5678888888877654
No 34
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=2.2e-19 Score=179.97 Aligned_cols=173 Identities=12% Similarity=0.108 Sum_probs=124.0
Q ss_pred CCeEEEccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccc
Q 010850 47 PDVYARCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMK 121 (499)
Q Consensus 47 ~~~~~~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (499)
+.+.++||+||||+ |-..|-|+ -..+-..|+++.++.+++.++ ..+++..... .. ++
T Consensus 5 ~~~~~~a~aKiNL~L~i~~kr~dGyH~l~s~~~~i~l~D~l~i~~~~~----~~i~~~~~~~----~~--ip-------- 66 (290)
T PRK14608 5 PSLTEFAPAKINLALHVTGRRADGYHLLESLVAFADVGDRLTLEPAEA----LSLTVSGPFA----AG--LG-------- 66 (290)
T ss_pred ceEEEEeceeEEeeeccCCCCCCCCcceeEEEEECCCCcEEEEEECCC----CcEEEeCCCc----cC--CC--------
Confidence 44668899999994 66666444 357888999999999987655 3455543110 00 11
Q ss_pred cCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 122 HHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 122 ~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
.++.|++..+++.+ ....+.. ..|++|++.++||+++|||||||.++|++.+++++++.++++++++++|..+
T Consensus 67 -~~~~Nlv~ka~~~~---~~~~g~~---~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~i 139 (290)
T PRK14608 67 -DGDDNLVLRAARAL---RARVGPG---LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSL 139 (290)
T ss_pred -CCCCcHHHHHHHHH---HHHhCCC---CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 12447775433332 2333321 2689999999999999999999999999999999999999999999999986
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
| .|...+++||. .+........++++.++++.++|++|+.+.+
T Consensus 140 g---------~dv~~~l~gg~---~~~~g~g~~~~~l~~~~~~~~vv~~p~~~~s 182 (290)
T PRK14608 140 G---------ADVPVCLDSRP---LIMRGIGEELTPLPGLPSLPAVLVNPGVPVA 182 (290)
T ss_pred C---------CCcchhhcCCe---EEEEecCCEeEECCCCCCcEEEEECCCCCcC
Confidence 3 48888999984 3333333445566544578899999987644
No 35
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.85 E-value=2.6e-19 Score=178.67 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=119.8
Q ss_pred eEEEccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.++||+||+|+ |...|-|+ -..+-..|+++.++.+++.+. ..+++.. +. ..++. .
T Consensus 4 ~~~~apaKiNl~L~i~~~r~dgyH~l~s~~~~i~l~d~v~v~~~~~----~~~~i~~-~~----~~~p~--------~-- 64 (280)
T PRK14614 4 LTLKAPAKVNYRLDVLRRRPDGYHDLRMIMQRVDLCDEIEIALSDG----PGIRVTC-GR----EGVPD--------G-- 64 (280)
T ss_pred eEEeecceEEeeeccCCCCCCCcChhheEeEECCCCeEEEEEECCC----CCEEEEe-CC----CCCCC--------C--
Confidence 557899999984 66665554 357888999999999987654 3355532 10 01111 0
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
-.|.+..+ +..++...+. ..|+++.|.++||+++|||||||.++|++.+++++++.+++++++.++|...
T Consensus 65 -~~nl~~~a---~~~~~~~~~~----~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~-- 134 (280)
T PRK14614 65 -PGNIAWRA---ADALLDLSGR----EVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKL-- 134 (280)
T ss_pred -CCcHHHHH---HHHHHHHhCC----CCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--
Confidence 12555433 3333344443 2589999999999999999999999999999999999999999999999765
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
+.|...+++||. .+.........+++.++++.+++++|+...+
T Consensus 135 -------G~Dv~~~l~gg~---~~~~g~ge~~~~l~~~~~~~ivl~~p~~~~s 177 (280)
T PRK14614 135 -------GADVPFFIFKKT---ALAEGIGDKLTAVEGVPPLWVVLVNPGLHVS 177 (280)
T ss_pred -------CCCcceeeeCCc---EEEEEcCceeEECCCCCCcEEEEECCCCCCC
Confidence 238877888874 3333333445566655678899999987654
No 36
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=1.5e-19 Score=180.09 Aligned_cols=164 Identities=19% Similarity=0.267 Sum_probs=112.8
Q ss_pred eEEEccceeeee----ccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNLI----GEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L~----GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.++||+||+|+ |-..| |+.-.++..+|+++.++++++.++ . +.+.... ..++.
T Consensus 3 ~~~~a~aKiNl~L~i~~~~~dgyH~l~sl~~al~l~d~v~i~~~~~----~-~~i~~~~-----~~~p~----------- 61 (276)
T PRK14612 3 MERLAPAKVNLGLSVLGRREDGYHELHTLMVPLDVGDRLEVEPIAS----G-LELRVLG-----ADLPT----------- 61 (276)
T ss_pred eEEeeCcEEeeccccCCCCCCCCceeEEEEEECCCCCEEEEEECCC----c-EEEEcCC-----CCCCC-----------
Confidence 457899999994 66555 445679999999999999987554 2 4443211 01111
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
+..|.+. +.+..+++..+. ..|++|++.++||+++|||||||.++|++.+++++++.+++ +.+++..++
T Consensus 62 ~~~Nli~---ka~~~~~~~~g~----~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g- 130 (276)
T PRK14612 62 DERNLVY---RAARAYLDAAGQ----PGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG- 130 (276)
T ss_pred CCcccHH---HHHHHHHHHhCC----CCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC-
Confidence 1225554 333334444454 25899999999999999999999999999999999998765 444444432
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
.|...+++||. .+.......+.+++.| ++.++|++|+++.+
T Consensus 131 --------~dv~~~~~GG~---~~~~g~g~~~~~l~~~-~~~~vv~~P~~~~s 171 (276)
T PRK14612 131 --------ADVPFFLLGGA---AEARGVGERLTPLELP-PVPLVLVNPGVAVS 171 (276)
T ss_pred --------CCcCeeeeCCe---EEEEecCccceEcCCC-CcEEEEECCCCCCC
Confidence 38888899984 3333333345566544 78899999987643
No 37
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=7.1e-19 Score=175.18 Aligned_cols=164 Identities=15% Similarity=0.180 Sum_probs=117.9
Q ss_pred EEEccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCC
Q 010850 50 YARCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ 124 (499)
Q Consensus 50 ~~~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (499)
..+||+||||+ |...|-|+ -..+..+|+++.++.+.+.++ +++..... . ++ .
T Consensus 3 ~~~a~aKiNL~L~i~~kr~dgyH~l~s~~~ai~l~d~v~i~~~~~------~~i~~~~~-----~--~~---------~- 59 (275)
T PRK14611 3 VLLSPAKVNLGLWILGKRPDGYHEIFTIYHTIDLYDRIYIKEHHT------LEVKTSSP-----Q--IK---------E- 59 (275)
T ss_pred eeeecceEEeeeccCcCCCCCcchhhheeEeccCCcEEEEEECCc------EEEEeCCC-----C--CC---------C-
Confidence 56899999995 66666444 457889999999999987433 34432110 0 11 1
Q ss_pred ccchHHHHHHHHHHHHHH-cCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 125 WGHYFICGYKAFYEYVKA-KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 125 ~~~~v~~~i~~v~~~l~~-~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
+.|++..+++ .+++ .+. ..|++|++.++||+++|||||||.++|++.+++++++.+++.++++++|..+|.
T Consensus 60 ~~n~v~~a~~----~~~~~~g~----~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~ 131 (275)
T PRK14611 60 EENIVYKALR----LFERYTGI----DINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA 131 (275)
T ss_pred cccHHHHHHH----HHHHHhCC----CCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 3477754433 3333 243 368999999999999999999999999999999999999999999999999752
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
|...+++||. .+.........+++.+.++.+++++|+++.+
T Consensus 132 ---------D~~~~~~Gg~---~~~~~~g~~~~~~~~~~~~~~vv~~p~~~~s 172 (275)
T PRK14611 132 ---------DAPFFLKGGF---ALGRGIGDKLEFLEKPISREITLVYPNIKSS 172 (275)
T ss_pred ---------CCCeeecCCe---EEEeccCceeEECCcCCCcEEEEEeCCCCCC
Confidence 6555778874 3444433345555544567899999988654
No 38
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=7.6e-19 Score=176.52 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=118.3
Q ss_pred CeEEEccceeeee----ccccccCC-CeeeEeecc-cceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccc
Q 010850 48 DVYARCPGRVNLI----GEHIDYEG-YSVLPMAIR-QDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMK 121 (499)
Q Consensus 48 ~~~~~APgrv~L~----GEH~d~~G-~~~l~~AId-~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (499)
.+.++||+||||+ |-..|-|+ -..+..+|+ .+.++.+++.++ ..+++..... +.+ .
T Consensus 6 ~~~~~apaKINL~L~v~~kr~DGyH~l~sl~~~i~~~~D~l~i~~~~~----~~i~~~~~~~-------~~~------~- 67 (296)
T PRK14615 6 AVTLRSGCKVNLDLRITGVRPDGYHEIDSLFLPLPEPHDELHVRVTDA----PGITVTCTIP-------DLD------P- 67 (296)
T ss_pred eEEEEecceEEeccccCCcCCCCCcceEEEEEECCCCCcEEEEEECCC----CCEEEEECCC-------CCC------C-
Confidence 4678999999994 77777444 469999999 599999988765 4466643210 011 1
Q ss_pred cCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 122 HHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 122 ~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
. .|.+..+++.+ ....+. ..|++|+|.++||+++|||||||.++|++.+++++++.+++.++++++|..+
T Consensus 68 ~---~Nlv~~a~~~~---~~~~~~----~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~ 137 (296)
T PRK14615 68 E---RNTVTRAYTAF---AAATGF----RPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGV 137 (296)
T ss_pred C---ccHHHHHHHHH---HHHhCC----CCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 1 25554333222 223343 2689999999999999999999999999999999999999999999999997
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeec-CCCcEEEEEeCCCcccc
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL-PAGGTFVVAHSLAESLK 257 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~-p~~~~~vl~~s~~~~~~ 257 (499)
|. |...+++||. .+........+++++ ++++.++|++|++..+|
T Consensus 138 ga---------DvPffl~gg~---a~~~G~Ge~~~~l~~~~~~~~~vl~~P~~~vsT 182 (296)
T PRK14615 138 GA---------DVPFFLHNVP---CRATGIGEILTPVALGLSGWTLVLVCPEVQVST 182 (296)
T ss_pred CC---------CCeeeccCCC---EEEEeeEeEEEECCCCCCCcEEEEECCCCCcCh
Confidence 53 4444445543 122222234455554 34678999999886543
No 39
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=3.3e-19 Score=176.62 Aligned_cols=167 Identities=14% Similarity=0.085 Sum_probs=119.6
Q ss_pred EEEccceeeee----ccccccCCC-eeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCC
Q 010850 50 YARCPGRVNLI----GEHIDYEGY-SVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ 124 (499)
Q Consensus 50 ~~~APgrv~L~----GEH~d~~G~-~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (499)
+.+||+||||+ |-..|-|+- ..+...|+++.++.+++.++ ..+.+...+. . + +...
T Consensus 2 ~~~apaKiNL~L~v~~~r~dGyH~l~s~~~~i~l~D~l~i~~~~~----~~~~~~~~~~-----~--~--------~~~~ 62 (269)
T PRK14609 2 ITFPNAKINLGLNVVEKRPDGYHNLETVFYPIPLTDALEITVRSA----TKTSLTVSGI-----P--I--------PGDP 62 (269)
T ss_pred CcCccccEEeeeccCCcCCCCcceeeEEEEECCCCcEEEEEEcCC----CcEEEEeCCC-----C--C--------CCCc
Confidence 46799999994 666665553 57888999999999987655 4455533211 0 1 1123
Q ss_pred ccchHHHHHHHHHHHHHH-cCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 125 WGHYFICGYKAFYEYVKA-KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 125 ~~~~v~~~i~~v~~~l~~-~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
+.|++..++ ..+++ .+. .|++|.+.++||+++|||||||.++|++.+++++++.+++.++++++|..+
T Consensus 63 ~~Nlv~~a~----~~~~~~~~~-----~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~i-- 131 (269)
T PRK14609 63 EDNLVVKAY----NLLKKDFPL-----PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATL-- 131 (269)
T ss_pred cccHHHHHH----HHHHHHcCC-----CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--
Confidence 457775333 33333 332 589999999999999999999999999999999999999999999999986
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecC-CCcEEEEEeCCCccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP-AGGTFVVAHSLAESL 256 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p-~~~~~vl~~s~~~~~ 256 (499)
+.|...+++||. .+.........+++.+ +++.+++++|++..+
T Consensus 132 -------GaDvpffl~g~~---a~~~G~Ge~l~~l~~~~~~~~~vlv~P~~~~s 175 (269)
T PRK14609 132 -------GADCAFFIRNKP---VYATGIGDIFSPIDLSLSGYYIALVKPDIHVS 175 (269)
T ss_pred -------CCCceEEccCCC---EEEEEeCCeeEECCCCCCCCEEEEECCCCCCC
Confidence 258777777764 2333333455566533 568899999987644
No 40
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.81 E-value=5.8e-18 Score=170.14 Aligned_cols=278 Identities=14% Similarity=0.116 Sum_probs=172.5
Q ss_pred Eccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCC--CCceeec-CCCCcccccccC
Q 010850 52 RCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDK--YNMCTYP-AEPDQEIDMKHH 123 (499)
Q Consensus 52 ~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~--~~~~~~~-l~~~~~~~~~~~ 123 (499)
+||+||||+ |...|-|+ -..+-..|+++.++++++.++ ..+.+...+.. .+...+. ++. ...
T Consensus 2 ~apAKINL~L~I~gkr~dGyH~l~s~~~~i~l~D~l~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 71 (297)
T PRK14613 2 ISPAKINLGLEIPFKREDGFHEIRSVFLKISWGDDIEIEPAPN----GVFELFSTNEIILEKRKLYDQVSE------RGD 71 (297)
T ss_pred CCCceEeeeecCCCcCCCCcceeeeEEEEeccCCEEEEEECCC----CcEEEEecccccccccccccccCC------CCC
Confidence 589999994 77777554 468889999999999987655 44666532210 0000000 100 001
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
.-.|.+..+++.+. +..+. ..|++|+|.++||+++|||||||.+++++.+++..+++ ...+++.++|.+++
T Consensus 72 ~~~Nlv~ka~~~~~---~~~~~----~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lG- 142 (297)
T PRK14613 72 IKQNILYKTFIKAR---SLFPE----LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIG- 142 (297)
T ss_pred cccchHHHHHHHHH---HHhCC----CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhC-
Confidence 11477764444333 33343 26899999999999999999999988888888775554 23467777998872
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHh
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 283 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~ 283 (499)
.|..+++.|+ ..+........+++++|..+. +++.|++..+|..
T Consensus 143 --------aDvP~~l~G~---~a~~~g~Ge~~~~l~~~~~~~-vlv~P~~~vsT~~------------------------ 186 (297)
T PRK14613 143 --------SDVPFFLGEG---HAFVTGKGEIMEEIEVHKGQG-ILALTPQVMNTGE------------------------ 186 (297)
T ss_pred --------CccchhhcCC---eEEEecCCcEEEEcCCCCCeE-EEEECCCCcChHH------------------------
Confidence 3855555544 344454455566777666654 6777887543221
Q ss_pred CCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhh
Q 010850 284 GMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYK 363 (499)
Q Consensus 284 g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (499)
+ ++.+++. +... . .+.
T Consensus 187 ------a------------------------------~~~l~~~-~~~~-~-------~~~------------------- 202 (297)
T PRK14613 187 ------M------------------------------YALLKKP-LQES-A-------SQK------------------- 202 (297)
T ss_pred ------H------------------------------HHhcchh-hccc-c-------ccc-------------------
Confidence 0 0000000 0000 0 000
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCC
Q 010850 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM-NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGW 442 (499)
Q Consensus 364 ~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm-~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~ 442 (499)
.. +.+...++.++.++ |++.+...| |+. +.++... +|+++++++.+++.|++|++|||+|
T Consensus 203 ~~---------~~~~~~~~~al~~~-----~~~~l~~~l~ndl-e~~~~~l---~P~~~~i~~~~~~~Ga~~~~mSGSG- 263 (297)
T PRK14613 203 NG---------NTLSEDLISSLKVG-----DWVSLQGRLENDF-EPVAFQL---HPELGVLKDKFLEFGSSYCSLTGSG- 263 (297)
T ss_pred cc---------cccHHHHHHHHHcC-----CHHHHHHHhcccc-hHHHHHh---CcHHHHHHHHHHHcCCCEEEEEccc-
Confidence 00 01222356667665 587775544 666 5444433 9999999999999999999999997
Q ss_pred cceEEEEEeC-CchHHHHHHHHHHHHh
Q 010850 443 GGCVVALVKE-SIDSQFILNLKEQFYQ 468 (499)
Q Consensus 443 GG~viaL~~~-~~~~~~~~~l~~~~~~ 468 (499)
+|+++|+++ ++++++.+.+++.|.+
T Consensus 264 -ptvf~l~~~~~~a~~~~~~l~~~~~~ 289 (297)
T PRK14613 264 -SSMYGLVQGLEIQEELLPRLRQEFSN 289 (297)
T ss_pred -cceEEEeCCHHHHHHHHHHHHHhhcc
Confidence 999999976 5678888888776643
No 41
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.80 E-value=1.4e-17 Score=165.26 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=115.6
Q ss_pred eEEEccceeeeeccccccCCC--------eeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccccc
Q 010850 49 VYARCPGRVNLIGEHIDYEGY--------SVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDM 120 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~--------~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~ 120 (499)
+.++||+||||++ | +.|. ..+..+|+++.++.+++.++ ..+++.+..+ . +
T Consensus 7 ~~~~apaKiNL~L-~--v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~----~~~~i~~~~~----------~---~-- 64 (271)
T PRK00343 7 LDWPAPAKLNLFL-H--ITGRRADGYHELQTLFQFLDWGDTLHFEVRDD----GEIRLLTPIP----------G---V-- 64 (271)
T ss_pred EEEeeeeeEEEEe-e--cCCcCCCCCCeeeEEEEEcccceEEEEEECCC----CcEEEeCCCC----------C---C--
Confidence 5578999999998 4 2332 36899999999999988765 4466643110 0 0
Q ss_pred ccCCccchHHHHHHHHHHHHHH-cCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 010850 121 KHHQWGHYFICGYKAFYEYVKA-KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTC 199 (499)
Q Consensus 121 ~~~~~~~~v~~~i~~v~~~l~~-~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~ 199 (499)
..|.|++..++ ..+.+ .+. ..|+++.|.++||+++|||||||.++|++.+++++++.++++++++++|.
T Consensus 65 --~~~~N~v~~a~----~~l~~~~~~----~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~ 134 (271)
T PRK00343 65 --PEEDNLIVRAA----RLLQKATGT----PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGL 134 (271)
T ss_pred --CCcccHHHHHH----HHHHHHhCC----CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 13568886433 33333 243 25999999999999999999999999999999999999999999999998
Q ss_pred HHhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 200 ECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 200 ~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
++| .|...++.|+. .+........++++.| ...++|++|+.+.+
T Consensus 135 ~ig---------aDvp~~l~g~~---~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~s 178 (271)
T PRK00343 135 KLG---------ADVPVFVRGHA---AFAEGIGEILTPVDLP-EKWYLVVKPGVHIS 178 (271)
T ss_pred HhC---------CCceEEecCCc---EEEEecCCEEEECCCC-CcEEEEEeCCCCcC
Confidence 874 36444444442 3333333445566544 45678999987644
No 42
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.72 E-value=4.5e-16 Score=149.74 Aligned_cols=226 Identities=19% Similarity=0.287 Sum_probs=164.2
Q ss_pred CCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeec
Q 010850 151 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 230 (499)
Q Consensus 151 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~ 230 (499)
.|++|.|.++||.+.||||.+.++.|+..+++++++++++.++|+....+ |.. |++-.++.-+||+ .+|.
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR-----G~t-SgiGv~afe~GGF----IVDG 139 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR-----GGT-SGIGVYAFEYGGF----IVDG 139 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc-----CCc-cceeEEEEEECCE----EEEC
Confidence 68999999999999999999999999999999999999999999888766 333 3467777888884 3453
Q ss_pred C------C--Ce--eEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhh
Q 010850 231 N------P--IR--TTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 300 (499)
Q Consensus 231 ~------~--~~--~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v 300 (499)
. | .. +-+.++|.+|.|+|+.|..++. .+..| |.. ++++.
T Consensus 140 Gh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg-------~~~~~--E~~----if~~~------------------ 188 (312)
T COG1907 140 GHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERG-------VSGRR--EVD----IFKKY------------------ 188 (312)
T ss_pred CcccCcccCCCCceeeeecCCCceEEEEEecCCCcc-------ccchH--HHH----HHHhc------------------
Confidence 1 1 12 5577899999999999987531 11112 111 11100
Q ss_pred hhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHH
Q 010850 301 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 380 (499)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~ 380 (499)
.|...+ ..+++.|++ +.+
T Consensus 189 --------------------------~p~p~~-------------------------------~~~~ls~~v-----Lm~ 206 (312)
T COG1907 189 --------------------------CPVPLE-------------------------------EVGELSHRV-----LMK 206 (312)
T ss_pred --------------------------CCCCHH-------------------------------HHHHHHHHH-----HHH
Confidence 111111 123333321 345
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhHhh---hhhc--CCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCch
Q 010850 381 FKDTVSSNLSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESID 455 (499)
Q Consensus 381 ~~~al~~~~~~~~d~~~lg~lm~~sh~~l---r~~~--~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~ 455 (499)
++.|+... |++.||+.|++.|... .+.. ++.|+.+..+++.+.++ +|||.+| .||+++++++++...
T Consensus 207 mmPavvE~-----Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~~~ 278 (312)
T COG1907 207 MMPAVVER-----DIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSREA 278 (312)
T ss_pred HhHHHHhh-----CHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEecccccc
Confidence 67777754 7999999999999887 3322 46689999999999998 8999998 899999999988776
Q ss_pred HHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 010850 456 SQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 497 (499)
Q Consensus 456 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 497 (499)
..+...+.+.+.+.. ....+++|+|.+ ||.++
T Consensus 279 ~~~~~~~~~~~~~~g----------~~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 279 GSVVRKLIDILLEEG----------IGGEVFVTKARNRGAEIL 311 (312)
T ss_pred chHHHHHHHHHHhcC----------CceEEEEeccCCCCceec
Confidence 666666666555544 367899999988 99875
No 43
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.71 E-value=2.3e-15 Score=149.24 Aligned_cols=164 Identities=16% Similarity=0.172 Sum_probs=117.2
Q ss_pred EEEccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCC
Q 010850 50 YARCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQ 124 (499)
Q Consensus 50 ~~~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~ 124 (499)
.++||+||||+ |...|-|+ -..+-..|+++.++++++.+. ..+.+.... . ++ . +
T Consensus 2 ~~~apAKINL~L~V~gkR~DGYH~l~sl~~~i~l~D~l~i~~~~~----~~i~i~~~~------~--~~------~-~-- 60 (288)
T PRK00650 2 HFFSPAKLNLFLQLLGKREDGFHEIVTRYQAIAFGDQLSLSISSR----DSLQVINAC------H--LE------T-P-- 60 (288)
T ss_pred CccccceEEeeeccCCcCCCCCcceeEEEEEcCCCCEEEEEECCC----CcEEEeCCC------C--CC------c-c--
Confidence 35799999994 77777554 468889999999999987654 345553210 0 11 1 1
Q ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhh
Q 010850 125 WGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 204 (499)
Q Consensus 125 ~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~ 204 (499)
.|.+..+++. ..+..+. ..|++|.+.++||+++|||||||.++|++.+++++++.+++.+++.++|.++|
T Consensus 61 -~Nlv~ra~~~---l~~~~g~----~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG-- 130 (288)
T PRK00650 61 -SNSIWKSVAL---FRRYTGI----TTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG-- 130 (288)
T ss_pred -ccHHHHHHHH---HHHHhCC----CCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--
Confidence 3666533332 2333354 25899999999999999999999999999999999999999999999999985
Q ss_pred hCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCc
Q 010850 205 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 254 (499)
Q Consensus 205 ~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~ 254 (499)
.|...++.||. .+.......+++++.++++.++++.|++.
T Consensus 131 -------aDvPffl~~g~---a~~~G~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 131 -------MDTPFFFSTGS---ALGVGRGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred -------CcchhhhcCce---EEEEecCCEEEECcCCCCceEEEEeCCCC
Confidence 26666666653 23333334556665555677889988764
No 44
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.70 E-value=4.8e-15 Score=148.06 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=116.1
Q ss_pred eEEEccceeeee----ccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNLI----GEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L~----GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.+.||+||||+ |-..|-|+ -..+-++++++.++.+++.++ ...+.+... .+++ .
T Consensus 4 ~~~~apAKINL~L~v~g~r~dGyH~l~s~~~~i~l~D~l~i~~~~~---~~~~~~~~~--------~~~~---------~ 63 (283)
T PRK14610 4 FLVKAPAKINLFLHIVGKSESGYHLLESLFVFVNLYDFLEIKIGSK---NRGVEFVNS--------LKIN---------R 63 (283)
T ss_pred eEEeecceEEeeeccCCcCCCCcchhheeeEEcCCCCEEEEEECCC---CCeEEEeCC--------CCCC---------C
Confidence 678999999994 66666444 357889999999999987653 023555321 0111 0
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
. .|++..+++.+ +...+. ..|++|.+.++||+++|||||||.++|++.+++++++ ++.+++.++|..+
T Consensus 64 ~-~Nlv~kA~~~l---~~~~~~----~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l-- 131 (283)
T PRK14610 64 Y-NNTVQRAIGLL---LRHSPV----RTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV-- 131 (283)
T ss_pred C-CcHHHHHHHHH---HHHhCC----CCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh--
Confidence 1 36665333332 333343 2599999999999999999999999999999999996 6999999999885
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeec-CCCcEEEEEeC-CCc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL-PAGGTFVVAHS-LAE 254 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~-p~~~~~vl~~s-~~~ 254 (499)
|.|...+++||. .+.......+++++. +....++|+.| ++.
T Consensus 132 -------GaDvPffl~g~~---a~~~G~Ge~l~~l~~~~~~~~~vl~~p~~~~ 174 (283)
T PRK14610 132 -------GSDVPACLDSKT---LFVRGIGEDILLLPDLSLPTYVVLVAPKGKF 174 (283)
T ss_pred -------CCCCcEEEECCe---EEEEecccEEEECcccCCCCeEEEEECCCCc
Confidence 679999999874 355555556666642 22344788877 443
No 45
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.67 E-value=9.5e-15 Score=143.43 Aligned_cols=169 Identities=19% Similarity=0.271 Sum_probs=124.6
Q ss_pred CeEEEccceeee----eccccccCCC-eeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccccccc
Q 010850 48 DVYARCPGRVNL----IGEHIDYEGY-SVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH 122 (499)
Q Consensus 48 ~~~~~APgrv~L----~GEH~d~~G~-~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (499)
...+.||+|||| .|-..|-|+- ..+...||.+.++.++++++ ..+.+... + ...+ +.
T Consensus 3 ~~~~~apAKiNL~L~V~gkr~DGYHel~sl~~~id~~D~l~i~~~~~----~~~~~~~~---~-~~~l----------p~ 64 (289)
T COG1947 3 STKFPAPAKINLFLHVTGKRADGYHELETLFQFIDLGDELTIRPRDD----DGFIVLGT---F-ADGL----------PT 64 (289)
T ss_pred ceEeeccceEEEEEEecccCCCCceeeEEEEEEeccCCEEEEEECCC----CCceEecC---C-CCCC----------CC
Confidence 356899999999 4888875554 47888999999999999886 33444321 0 0111 11
Q ss_pred CCccchHHHHHHHHHHHHHH-cCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 123 HQWGHYFICGYKAFYEYVKA-KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 123 ~~~~~~v~~~i~~v~~~l~~-~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
+. |.+. ++. ..|++ .+. ..|++|.|+++||+++|||+.||.+++++.+|+++++..++.++|.+++.++
T Consensus 65 ~~--NLv~---rAa-~ll~~~~~~----~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L 134 (289)
T COG1947 65 DE--NLVY---RAA-ELLRKRTGI----AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL 134 (289)
T ss_pred cc--hHHH---HHH-HHHHHHhCC----CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 11 5554 222 33333 343 3689999999999999999999999999999999999999999999999987
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
+.|.-.+++||. -+.......+++++-++...++++.|++..+
T Consensus 135 ---------GaDVPffl~g~t---A~a~G~GE~l~~~~~~~~~~~vl~~P~v~vs 177 (289)
T COG1947 135 ---------GADVPFFLSGGT---AFAEGRGEKLEPLEDPPEKWYVLAKPGVGVS 177 (289)
T ss_pred ---------CCCcCeeeeCCc---eEEEEccceeeECCCCCCceEEEEeCCCCCC
Confidence 568888888874 3445555677777745567788888887544
No 46
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=99.60 E-value=1.3e-15 Score=111.41 Aligned_cols=52 Identities=50% Similarity=0.796 Sum_probs=44.0
Q ss_pred HHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEEC
Q 010850 36 NSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKH 87 (499)
Q Consensus 36 ~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~ 87 (499)
++.|++.||.+|+++++||||++|+|||+||+||.+|++||++++++.++++
T Consensus 1 ~~~F~~~fg~~p~~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r 52 (52)
T PF10509_consen 1 KEEFEEFFGEEPEVVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR 52 (52)
T ss_dssp -HHHHHHHSS--SEEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred ChhHHHHhCCCCCEEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence 3689999999999999999999999999999999999999999999999874
No 47
>PRK05905 hypothetical protein; Provisional
Probab=99.56 E-value=3.8e-13 Score=131.70 Aligned_cols=167 Identities=11% Similarity=0.074 Sum_probs=115.9
Q ss_pred EEEccceeeee----ccccc--cCCCeeeEeec-ccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccccccc
Q 010850 50 YARCPGRVNLI----GEHID--YEGYSVLPMAI-RQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH 122 (499)
Q Consensus 50 ~~~APgrv~L~----GEH~d--~~G~~~l~~AI-d~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (499)
.+.||+||||+ |-..| |+.-..+...| +++.++.+++.++. ...+++..... . .+ .
T Consensus 2 ~~~apAKINL~L~I~gkR~DdGYHel~sv~~~i~~l~D~l~i~~~~~~--~~~i~~~~~~~-----~--~~-------~- 64 (258)
T PRK05905 2 KYKSYAKINLGLSIYKKCKKVTKHKLESIFILVENVYDDIEIEKIEKN--IDDIHYFDETN-----E--IL-------V- 64 (258)
T ss_pred cccccceEEeeeeecccCCCCCCcceeEEEEEccccccEEEEEECCCC--CceEEEeCCCc-----C--CC-------C-
Confidence 36799999994 77775 44456888999 99999999876540 01354432100 0 00 0
Q ss_pred CCccchHH-HHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 123 HQWGHYFI-CGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 123 ~~~~~~v~-~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
. .|.+. .+++.+ .+..+. ..|++|.+.++||.++||||+||.++|++.+++++++ ++.+++.+++.++
T Consensus 65 -~-~nli~~ka~~~l---~~~~~~----~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l 133 (258)
T PRK05905 65 -Y-SRLILVKTLEWL---RDKYNI----KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL 133 (258)
T ss_pred -C-cchHHHHHHHHH---HHHhCC----CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh
Confidence 1 25553 333222 223343 2589999999999999999999999999999999998 6899999999887
Q ss_pred hhhhCCCCCchhhhhhhhh-cCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 202 EQFIGTQSGGMDQAISIMA-KSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~G-g~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
+.|.-.+++| +. .+.......+++++.|....++|+.|++..+
T Consensus 134 ---------GADVPFfl~g~~~---a~~~G~GE~l~pl~~~~~~~~vlv~P~~~vS 177 (258)
T PRK05905 134 ---------GSDIPFFLSGYKT---AYISDYGSQVEDLIGQFKLTYKVIFMNVNVS 177 (258)
T ss_pred ---------CCCcceEEeCCcc---EEEEeeCceeEECCCCCCceEEEECCCCCCC
Confidence 5688888888 64 2344444566777555456689999987543
No 48
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.56 E-value=4.4e-12 Score=121.35 Aligned_cols=163 Identities=24% Similarity=0.342 Sum_probs=110.4
Q ss_pred EEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchH
Q 010850 50 YARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYF 129 (499)
Q Consensus 50 ~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 129 (499)
.++|||-+.++---++..| -+++||+.+.+.++..++ . ++.. .+ . .+ ...+
T Consensus 4 ~a~A~g~~TIiNAiatG~G---~AfgidL~v~a~v~~~~~----~--~~~~----~~--~--~d------------~~li 54 (278)
T COG1685 4 RARAYGGGTIINAIATGKG---SAFGIDLKVEAEVRLSDE----G--KVRG----EP--E--GD------------TRLI 54 (278)
T ss_pred eEEecCceeEeeehhcCcc---ceeeecceEEEEEEEcCc----c--cccc----CC--C--CC------------hHHH
Confidence 4566766666544433333 357889998888876654 1 1111 00 0 00 0122
Q ss_pred HHHHHHHHHHHHH-cCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCC
Q 010850 130 ICGYKAFYEYVKA-KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ 208 (499)
Q Consensus 130 ~~~i~~v~~~l~~-~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~ 208 (499)
..+++.+.+ .+. ..++++.++|+||.++||.||||++.|++.|+..+.|.++++.+++++..++-.-.|..
T Consensus 55 ----~~~~~~v~e~~g~----~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvS 126 (278)
T COG1685 55 ----ERCVERVREKYGI----PLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVS 126 (278)
T ss_pred ----HHHHHHHHHHcCC----CcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCce
Confidence 333344433 354 36999999999999999999999999999999999999999999999998887655543
Q ss_pred -CCch-hhhhhhhhcCCceEEeecCCCeeEEe-ecCCCcEEEEEeCCC
Q 010850 209 -SGGM-DQAISIMAKSGFAELIDFNPIRTTDV-QLPAGGTFVVAHSLA 253 (499)
Q Consensus 209 -~g~~-D~~~~~~Gg~~~~~~i~~~~~~~~~i-~~p~~~~~vl~~s~~ 253 (499)
.|-. |..++++|| +.+.|.+.+++.+. +.| ++..+|.-|+.
T Consensus 127 vTGA~DDa~AS~~GG---~~iTDN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 127 VTGAFDDACASYLGG---IVITDNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred EeccchHHHHHHhCC---eEEecchhheehhccccC-CceEEEEecCC
Confidence 3445 566789999 45667666665544 343 67788877764
No 49
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=99.51 E-value=1.3e-11 Score=120.25 Aligned_cols=387 Identities=16% Similarity=0.169 Sum_probs=201.7
Q ss_pred eEEEccceeeeeccccccCC-CeeeEeecccceEEEEEECCCcCCc--ceEEEEeCCCCCCcee----ecCCCCcccc--
Q 010850 49 VYARCPGRVNLIGEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAE--KVLKIANVSDKYNMCT----YPAEPDQEID-- 119 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~--~~i~i~s~~~~~~~~~----~~l~~~~~~~-- 119 (499)
.+++||||+-+.|++.+... +..+...++.+.++.+.|..+.++. ..+++.|. +|...+ +++... .+.
T Consensus 3 v~~SAPGKvL~aGGYlVLd~~y~glV~gl~Ar~yAi~~p~~~~~g~~~~~VrvkSp--Qf~d~EwlY~is~~~~-~i~v~ 79 (459)
T KOG4519|consen 3 VVASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGPEWTDVRVKSP--QFSDREWLYKISLNHL-TIQVV 79 (459)
T ss_pred ceecCCCceEEecceEEecCCcceeEEeeeceeEEEeeccccccCCccceeEecCc--ccccchheeecccccc-eeEEE
Confidence 46899999999999999864 5567788888888888888764332 23566553 343222 221110 010
Q ss_pred cccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEE-Ee-------------------------cCC--CCCCCCchH
Q 010850 120 MKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILV-DG-------------------------TVP--TGSGLSSST 171 (499)
Q Consensus 120 ~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i-~s-------------------------~iP--~g~GLGSSa 171 (499)
...+....|+.-+|..++.++...+.+.--.+|+++++ .| .+| +..||||||
T Consensus 80 ~~~~s~NPFve~ai~yvi~yf~~~~~~~lc~q~L~Vt~l~sddaY~~qp~s~~~~~~~~~~~F~~~~~~eV~KTGLGSSA 159 (459)
T KOG4519|consen 80 SASDSRNPFVEHAIQYVIAYFHLATLHKLCLQGLDVTILGSDDAYSYQPESLGTLAPFASITFNAAEKPEVAKTGLGSSA 159 (459)
T ss_pred ecCCCCCcHHHHHHHHHHHHhhhccchhHHhcCceEEEeecccccccCcccccccCCCCceeeeccccccccccCccchH
Confidence 11222234666667777777654322210114444442 12 233 368999999
Q ss_pred HHHHHHHHHHHHHhCC----------CCC---HHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEE
Q 010850 172 AFVCSSTVALMAAFGV----------EVP---KKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTD 237 (499)
Q Consensus 172 A~~va~~~al~~~~~~----------~l~---~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~ 237 (499)
|++.+++.+++..++. +++ ++-+-++|+.+.- ..|..+++.|..+++||. ..|..|.|..+..
T Consensus 160 am~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrRF~P~lis~ 236 (459)
T KOG4519|consen 160 AMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISF 236 (459)
T ss_pred HHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeeeCCHHHHHH
Confidence 9999999888877753 122 3446778887765 678999999999999987 5677777743332
Q ss_pred eecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhh-hhhhccCCCCCc
Q 010850 238 VQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC-VAFACKNGSSDP 316 (499)
Q Consensus 238 i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~-~~~~~~~~~~~~ 316 (499)
++ . .+.++.+.++ .+-.++..+|...+.+ -+|.....++ .+-.|..++..|
T Consensus 237 lp--~-----~i~~~~~~~e----------------l~~~V~k~~W~~~~~~-----f~LP~~~~L~mGd~~gGSsTp~m 288 (459)
T KOG4519|consen 237 LP--Q-----VIVTGLPLNE----------------LIGTVLKGKWDNKRTE-----FSLPPLMNLFMGDGSGGSSTPSM 288 (459)
T ss_pred HH--H-----HHhccChhHH----------------HHHHhhhhhccccccc-----ccCCceeeeeeecCCCCCCcHHH
Confidence 22 0 0111111110 0011122222211110 0122222222 234455678889
Q ss_pred hhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhh--hhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHH
Q 010850 317 VFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLN--AAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDK 394 (499)
Q Consensus 317 ~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d 394 (499)
|..|+++-.+.+-+..+....+ +....++.+.+..++ .+.+...+.|+.. +--++..-.++.. .
T Consensus 289 V~kVk~Wq~s~~pe~~k~~~~l----ddansr~~~~l~kl~~l~~~h~d~~~~v~e----Sl~~~~~~~~~~~------e 354 (459)
T KOG4519|consen 289 VGKVKKWQMSDPPEARKNWQNL----DDANSRLETKLNKLSKLAKDHWDVYLRVIE----SLSVLTINEAIIK------E 354 (459)
T ss_pred HHHHHHHhhcCChhHhhhhcch----hhHHHHHHhhhhhhhHhhhhchhHHHHHHh----hcccccchhhhhh------H
Confidence 9999999665532111111111 122222222222221 1111112222211 1111111111111 2
Q ss_pred HHHHHHHHHHHhHhhhhhc-----CCCCHHHHHHHHHHHh-CCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHh
Q 010850 395 LKKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 468 (499)
Q Consensus 395 ~~~lg~lm~~sh~~lr~~~-----~vs~peld~lv~~a~~-~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~ 468 (499)
+.++-+.|.....++|... .+-.|....|.+.++. .|++++-+-|||+=+.++++... ++ +..+.+.+.+..
T Consensus 355 ~~E~r~a~~~IRr~~r~it~ea~vdIEP~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~-dv-d~~~~~~~~w~~ 432 (459)
T KOG4519|consen 355 LLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLG-DV-DSGTKLTQAWSS 432 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhhHhhhhhcccceEEecccCCCCcceEEEEeec-ch-hHHHHHHhhhcc
Confidence 3333334444444444332 3456667778887776 69999999999998888888754 22 234444455533
Q ss_pred cccCCCcccCCCCcceEEEeeCCCceee
Q 010850 469 SRIDRGVINNNDLGLYVFASKPSSGAAK 496 (499)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 496 (499)
.. ++ ..-++....|.++
T Consensus 433 ~~----V~-------~ldV~~a~~Gv~~ 449 (459)
T KOG4519|consen 433 HN----VL-------ALDVREAPHGVCL 449 (459)
T ss_pred cC----ee-------EEeeeeCCCccee
Confidence 22 21 2335555567765
No 50
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=6.6e-12 Score=128.14 Aligned_cols=305 Identities=21% Similarity=0.290 Sum_probs=176.0
Q ss_pred CCCC-CeEEEccceeeeeccccccCC-------CeeeEeecccc----------------eEEEEEECCCcCCcceEEEE
Q 010850 44 AQPP-DVYARCPGRVNLIGEHIDYEG-------YSVLPMAIRQD----------------TIVAIRKHDSKEAEKVLKIA 99 (499)
Q Consensus 44 ~~~~-~~~~~APgrv~L~GEH~d~~G-------~~~l~~AId~~----------------~~v~~~~~~~~~~~~~i~i~ 99 (499)
|..| .+++.+|.||.++|++.|.+. +.++++||... .++.+.+++| +-.++|.
T Consensus 566 g~g~s~Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAiklDGk~PIga~a~kI~ePelwlai~~rQD---el~V~I~ 642 (948)
T KOG4644|consen 566 GAGPSTVIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKLDGKNPIGAFAEKIDEPELWLAIEIRQD---ELFVHIK 642 (948)
T ss_pred CCCCceEEEecceeeeecccccCCCCeeEeccccceeeeEEEecCCCccchhhhcCCCchheeeeeeecc---ceEEEEE
Confidence 3344 588999999999999999874 45788887653 2333344443 1234443
Q ss_pred eCCCCCCceeecCCCCcccccccCCccchHHHHH------HHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHH
Q 010850 100 NVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGY------KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAF 173 (499)
Q Consensus 100 s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i------~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~ 173 (499)
+.-.. ....+-.+.. .....-..++-++| ..+.+.|.+.. -.||++..+|++|-|+|||.|+-+
T Consensus 643 crcla-DlrD~cqpHa----~gal~~aafiCA~IVhl~sel~i~d~~~k~f-----~~GfeihT~SdLPHGSGLGTSSIl 712 (948)
T KOG4644|consen 643 CRCLA-DLRDLCQPHA----KGALEAAAFICACIVHLGSELNILDIFEKLF-----CCGFEIHTSSDLPHGSGLGTSSIL 712 (948)
T ss_pred eehhh-hhHHhhccCC----CchhhhhhhhheeeeeccchhhHHHHHHHHh-----cCceEeeccccCCCCCCcchHHHH
Confidence 31100 0000000000 00000011211111 12233333322 279999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHH----HHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecC-----CCeeEEeecCC--
Q 010850 174 VCSSTVALMAAFGVEVPKKE----IAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN-----PIRTTDVQLPA-- 242 (499)
Q Consensus 174 ~va~~~al~~~~~~~l~~~~----l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~-----~~~~~~i~~p~-- 242 (499)
+...+.|+.+..+.-...+. +.....+.|++.-+.+|++||..+++-|+- .-.+. ....+++.+|.
T Consensus 713 A~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK---~gr~rael~~~ie~eeiTipe~f 789 (948)
T KOG4644|consen 713 ACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIK---KGRCRAELNHGIEHEEITIPEEF 789 (948)
T ss_pred HHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhh---hccchhhccCCceeeeecCCHHH
Confidence 99999999998887555544 445556689888788899999998888741 11121 13455666664
Q ss_pred ----CcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchh
Q 010850 243 ----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVF 318 (499)
Q Consensus 243 ----~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~ 318 (499)
+-++++++++-. |+|-.+|+ +
T Consensus 790 ~ekL~dhLLLVYTGKT------------------RLAkNLLQ-------------------------------------d 814 (948)
T KOG4644|consen 790 REKLEDHLLLVYTGKT------------------RLAKNLLQ-------------------------------------D 814 (948)
T ss_pred HHHHhhcEEEEEeCch------------------HHHHHHHH-------------------------------------H
Confidence 245566666521 11111111 1
Q ss_pred HHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 010850 319 AVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKL 398 (499)
Q Consensus 319 ~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~l 398 (499)
.+|.+...- + ...+.+..+ +..+.++.+.++++ .++.+
T Consensus 815 ViRn~far~----~------------------------------a~~Q~ah~l---~~~tdecAegf~kG-----sl~Ll 852 (948)
T KOG4644|consen 815 VIRNFFARC----K------------------------------ATKQKAHKL---AEATDECAEGFEKG-----SLELL 852 (948)
T ss_pred HHHHHHHhh----H------------------------------HHHHHHHHH---HHHHHHHHHHHhcC-----cHHHH
Confidence 122221110 0 011222211 12355667778876 59999
Q ss_pred HHHHHHHhHhhhhhc-CCCCHHHHHHHHHHHh--CCCceeEecCcCCcceEEEEEeCCchHHHHHHH
Q 010850 399 GDLMNDSHHSCSVLY-ECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVALVKESIDSQFILNL 462 (499)
Q Consensus 399 g~lm~~sh~~lr~~~-~vs~peld~lv~~a~~--~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l 462 (499)
|+++...|+...-.. ||..+.+.+|.+.... .| -.+...|||+||+++-+.++.+.++-++++
T Consensus 853 gecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYLl~kEpqqkeaiEa~ 918 (948)
T KOG4644|consen 853 GECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYLLIKEPQQKEAIEAF 918 (948)
T ss_pred HHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEEEecCCCCHHHHHHh
Confidence 999988777543221 6777888888886532 33 334688999999999999876555444433
No 51
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.49 E-value=2.5e-11 Score=115.84 Aligned_cols=177 Identities=20% Similarity=0.184 Sum_probs=102.3
Q ss_pred EEEccceeeeeccccccCCC-eeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccch
Q 010850 50 YARCPGRVNLIGEHIDYEGY-SVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHY 128 (499)
Q Consensus 50 ~~~APgrv~L~GEH~d~~G~-~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (499)
..+||||+-|+|+++.+.++ .+.+.|++.+......+.++. +.+.+.. +- ...+ + . .+
T Consensus 5 ~fSaPGk~LlaGdYs~lv~glsahaia~nkr~~cs~vrvKsk---dswlfhi-si------~g~~-------k-n---sf 63 (337)
T COG3890 5 SFSAPGKLLLAGDYSILVEGLSAHAIAINKRAFCSFVRVKSK---DSWLFHI-SI------KGID-------K-N---SF 63 (337)
T ss_pred eecCCCceEEeccceeeeecceeeEEEeccccccceeEeccC---ceEEEEe-ee------cccC-------C-C---hH
Confidence 47999999999998777654 458889998876655444430 1222211 10 0000 0 0 01
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEEE------ec-CC---CCCCCCchHHHHHHHH--HHHHHHhCCCCCH-HHHH
Q 010850 129 FICGYKAFYEYVKAKGLDVGPPVGLDILVD------GT-VP---TGSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIA 195 (499)
Q Consensus 129 v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~------s~-iP---~g~GLGSSaA~~va~~--~al~~~~~~~l~~-~~l~ 195 (499)
+.-...-|+.+++..... -.+++++..+ ++ +| -..||||||+++++++ ..+....+-+++. .++.
T Consensus 64 iEl~~~~Vf~yF~~~~~~--c~qnlev~~ddayy~q~~f~~d~g~KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIh 141 (337)
T COG3890 64 IELRSDFVFKYFAYLSQN--CFQNLEVFADDAYYDQSNFFFDDGTKTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIH 141 (337)
T ss_pred HHHHHHHHHHHHHhhhhh--ccccceeecchhhcccccceecCCccCCCcchhHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 111111233333321000 0133333311 11 12 2689999999999998 3333335556765 8899
Q ss_pred HHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEe------ecCCCcEEEEEeCCC
Q 010850 196 QLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDV------QLPAGGTFVVAHSLA 253 (499)
Q Consensus 196 ~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i------~~p~~~~~vl~~s~~ 253 (499)
++|+.+.. ..|+.+|+.|.++++||+ ++|-.|.|.....+ .+. ++.++..+...
T Consensus 142 klaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~qig~~nfg-~y~LmmGd~a~ 202 (337)
T COG3890 142 KLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLRQIGAVNFG-DYYLMMGDQAI 202 (337)
T ss_pred HHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhHhhCccccc-Ceeeeeccccc
Confidence 99999986 579999999999999998 57767777433222 222 46666655544
No 52
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.49 E-value=8.5e-14 Score=108.42 Aligned_cols=67 Identities=40% Similarity=0.663 Sum_probs=62.2
Q ss_pred EEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhc
Q 010850 154 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 221 (499)
Q Consensus 154 ~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg 221 (499)
+|+++|+||+++|||||||+++|++.++++++++++++++++++++.+|+..+.+ +++|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~-~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKP-SGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSS-HSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCC-ChhhHHHHHhCc
Confidence 5899999999999999999999999999999999999999999999999856555 778889999997
No 53
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.40 E-value=8.7e-11 Score=118.25 Aligned_cols=217 Identities=12% Similarity=0.126 Sum_probs=135.7
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchh
Q 010850 134 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 213 (499)
Q Consensus 134 ~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D 213 (499)
..++..+++.... ..+++|.+.++||.++|||||||..+|++.|++++++++++++++.++|.+.| |..|
T Consensus 70 ~~~l~~~~~~~~~---~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gsa~---- 139 (305)
T TIGR01240 70 SNCLDDFRQLRKE---QEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GSAC---- 139 (305)
T ss_pred HHHHHHHHHhcCC---CCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CCee----
Confidence 3455556554221 36899999999999999999999999999999999999999999999999976 2222
Q ss_pred hhhhhhhcCCceEEeec----CCCeeEEeecCCCc----EEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCC
Q 010850 214 QAISIMAKSGFAELIDF----NPIRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 285 (499)
Q Consensus 214 ~~~~~~Gg~~~~~~i~~----~~~~~~~i~~p~~~----~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~ 285 (499)
.+++||+ +.+.. .+....+++.|..| .++++.+..++.-..+ .++
T Consensus 140 --~s~~GG~---v~~~~g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt-------------~gm--------- 192 (305)
T TIGR01240 140 --RSLFGGY---VAWEKGKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSR-------------QGM--------- 192 (305)
T ss_pred --eeeecCe---EEEEcCCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCH-------------HHH---------
Confidence 2789985 33332 22344565554344 4555555543210000 000
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhh
Q 010850 286 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 365 (499)
Q Consensus 286 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (499)
+..++..++ ..
T Consensus 193 -----------------------------------~~~~~ts~~----------------------------------~~ 203 (305)
T TIGR01240 193 -----------------------------------QLTVATSEL----------------------------------FK 203 (305)
T ss_pred -----------------------------------HHhhhcCcc----------------------------------HH
Confidence 111111110 01
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH----hHhhhhhc-C--CCCHHHHHHHHHH---HhCCCcee
Q 010850 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS----HHSCSVLY-E--CSCPELEELVNVC---RNNGALGA 435 (499)
Q Consensus 366 ~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~s----h~~lr~~~-~--vs~peld~lv~~a---~~~Ga~Ga 435 (499)
.++.+. ..++.+++++|.++ |++.||++...+ |..+.+-+ . .-+|+.-.+++.. ++.|.-.+
T Consensus 204 ~~v~~~---~~~l~~~~~ai~~~-----D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~ 275 (305)
T TIGR01240 204 EWIEHV---VPDFEVXRKAIKTK-----DFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICY 275 (305)
T ss_pred HHHHHH---HHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEE
Confidence 122221 12466788999976 799999988543 44433321 1 1245555554444 45676666
Q ss_pred EecCcCCcceEEEEEeCCchHHHHHHHHHHH
Q 010850 436 RLTGAGWGGCVVALVKESIDSQFILNLKEQF 466 (499)
Q Consensus 436 klsGaG~GG~viaL~~~~~~~~~~~~l~~~~ 466 (499)
-..=|| +.+..|+.+++.+++.+.+.+.|
T Consensus 276 ~T~DAG--pNv~vl~~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 276 FTMDAG--PNVKVLYLAENLSKLFEFIYKLF 304 (305)
T ss_pred EEEcCC--CCEEEEEccccHHHHHHHHHHhc
Confidence 677777 78999999999999998887643
No 54
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.39 E-value=6.2e-13 Score=108.22 Aligned_cols=82 Identities=32% Similarity=0.526 Sum_probs=69.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhHh-hhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEE-eCCchHHH
Q 010850 381 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV-KESIDSQF 458 (499)
Q Consensus 381 ~~~al~~~~~~~~d~~~lg~lm~~sh~~-lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~-~~~~~~~~ 458 (499)
+++||.++ |++.|+++|+++|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|+ +++.++++
T Consensus 1 m~~al~~~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v 75 (85)
T PF08544_consen 1 MIKALAEG-----DLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERV 75 (85)
T ss_dssp HHHHHHTT-----CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHH
T ss_pred CHHHHHCc-----CHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHH
Confidence 35677775 799999999999884 111235679999999999999999999999999999999999 45689999
Q ss_pred HHHHHHHHH
Q 010850 459 ILNLKEQFY 467 (499)
Q Consensus 459 ~~~l~~~~~ 467 (499)
.++|++.|+
T Consensus 76 ~~~l~~~~~ 84 (85)
T PF08544_consen 76 AEALREHYK 84 (85)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHhCC
Confidence 999987764
No 55
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.34 E-value=1.6e-11 Score=116.32 Aligned_cols=310 Identities=17% Similarity=0.219 Sum_probs=189.6
Q ss_pred CCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCc----CCcc---eEEEEeCCCCCCceeecCCCCccc
Q 010850 46 PPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSK----EAEK---VLKIANVSDKYNMCTYPAEPDQEI 118 (499)
Q Consensus 46 ~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~----~~~~---~i~i~s~~~~~~~~~~~l~~~~~~ 118 (499)
.|.+.++.|..-..+| +|++++++.+..+..+.+.-..+. ...+ .+...+..++|.......+.
T Consensus 2 ~~~f~IkvpassaNig-----Pg~dvlg~~l~~~~sldv~v~~~~~~~t~s~p~~c~ltya~eg~G~~~v~l~vd~---- 72 (355)
T KOG1537|consen 2 SPSFPIKVPASSANIG-----PGLDVLGSVLRCRASLDVLVAVEPEPVTVSVPTFCPLTYANEGPGFDFVGLAVDG---- 72 (355)
T ss_pred CCCcccccccccCCCC-----CCeeeeeeeeEEEEEEEEEEecccccccccCCCccceeeeccCCCccceeeeecc----
Confidence 4567788888888999 899999999888866554432210 0001 12222222333211111111
Q ss_pred ccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010850 119 DMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 198 (499)
Q Consensus 119 ~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a 198 (499)
|.+- ..++..++..++.. .+.+-++++.+-||.|+|+|||++..++.+...+...++.+++......+
T Consensus 73 --------n~iT---~t~lyvlRcnnis~-fp~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~ 140 (355)
T KOG1537|consen 73 --------NHIT---LTVLYVLRCNNISI-FPITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYS 140 (355)
T ss_pred --------ceEE---EeeeeeEEeCcEee-cccceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHH
Confidence 1110 00111122222221 23467889999999999999999999999999898888888887777776
Q ss_pred HHHhhh--------hCCCCC----------------chhhh-hhhhhcCCceEEeecCCCee---EEeecCCCcEEEEEe
Q 010850 199 CECEQF--------IGTQSG----------------GMDQA-ISIMAKSGFAELIDFNPIRT---TDVQLPAGGTFVVAH 250 (499)
Q Consensus 199 ~~~E~~--------~g~~~g----------------~~D~~-~~~~Gg~~~~~~i~~~~~~~---~~i~~p~~~~~vl~~ 250 (499)
.-+|+. +|+.+| -.|.. -...||+ .......|... .+++..+++.|+++.
T Consensus 141 lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~~~~~ad~ilp~~~gg~--~li~~lpP~dlg~~~r~pw~~~lk~i~vi 218 (355)
T KOG1537|consen 141 LMIERHPDNAVAEMMGGFLGSFLRALLESEAKVSGYHADNILPAIMGGF--VLIRNLPPLDLGKPLRFPWDKDLKFILVI 218 (355)
T ss_pred HHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhhcCCCHHHhcccccCCe--eeecCCCcccccccccCCCCccceEEEEe
Confidence 666531 222221 12333 3566774 22223334333 333444578888888
Q ss_pred CCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCC
Q 010850 251 SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYT 330 (499)
Q Consensus 251 s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 330 (499)
|.....++. .|..++.. |.
T Consensus 219 P~Fel~T~k------------------------------------------------------------~R~vLPt~-yp 237 (355)
T KOG1537|consen 219 PDFELPTKK------------------------------------------------------------MRAVLPTE-YP 237 (355)
T ss_pred ccccccchh------------------------------------------------------------hhhhcCcc-cc
Confidence 876432211 01122211 11
Q ss_pred HHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH-HHhHh
Q 010850 331 ALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN-LSEEDKLKKLGDLMN-DSHHS 408 (499)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~-~~~~~d~~~lg~lm~-~sh~~ 408 (499)
+ . |.+...+|...+..|+..+ + +......+|. .-|+.
T Consensus 238 ~------------------------------------~-d~V~NlqrlA~LttAl~~~p~----n~~L~y~~m~DkvhqP 276 (355)
T KOG1537|consen 238 M------------------------------------V-DHVWNLQRLAALTTALLEGPD----NVMLGYALMSDKVHQP 276 (355)
T ss_pred c------------------------------------e-eeeecHHHHHHHHHHHhcCCC----chhhhhhhhhccccCc
Confidence 1 1 1123345666667777764 3 4666677885 58999
Q ss_pred hhhhcCCCCHHHHHHHHHHHhC---CCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceE
Q 010850 409 CSVLYECSCPELEELVNVCRNN---GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYV 485 (499)
Q Consensus 409 lr~~~~vs~peld~lv~~a~~~---Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 485 (499)
+|.-+ .|.++.+...+... |.+|..+|||| .+++||.. +.-+++-+++-+.|.+.+. ...|
T Consensus 277 yRa~L---IPGl~~il~~~~p~t~pGl~GiclSGAG--PT~lAlat-enf~eI~~~mv~~F~K~G~----------kcs~ 340 (355)
T KOG1537|consen 277 YRAPL---IPGLEAILKAALPATYPGLFGICLSGAG--PTALALAT-ENFQEIGEKMVEAFWKVGH----------KCSV 340 (355)
T ss_pred ccccc---CccHHHHHHhhCcccCCceeeEEecCCC--CeeEEEec-CcHHHHHHHHHHHHHhhCc----------eeee
Confidence 99876 99999999998775 99999999999 89999985 7788999999998877663 5567
Q ss_pred EEeeCC-Cceee
Q 010850 486 FASKPS-SGAAK 496 (499)
Q Consensus 486 ~~~~p~-~Ga~v 496 (499)
-..+|. +||.+
T Consensus 341 ~~l~pa~Dga~v 352 (355)
T KOG1537|consen 341 ASLKPALDGAGV 352 (355)
T ss_pred EeeccccCCcce
Confidence 777763 46554
No 56
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.30 E-value=7.5e-11 Score=115.94 Aligned_cols=168 Identities=13% Similarity=0.115 Sum_probs=116.3
Q ss_pred EEEccceeee----eccccccCC-CeeeEeec-ccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 50 YARCPGRVNL----IGEHIDYEG-YSVLPMAI-RQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 50 ~~~APgrv~L----~GEH~d~~G-~~~l~~AI-d~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.+||+|||| .|.. |-|+ -..+...| +++.++.+++..+ ..+.+... + +.+ .
T Consensus 2 ~~~apaKINL~L~v~~kr-dGyH~l~s~~~~i~~l~D~l~i~~~~~----~~~~i~~~---~-----~~p------~--- 59 (257)
T PRK04181 2 VMKAYAKVNIFLKILGKR-GNYHELISRFVLVKDLFDEIEFVPKSA----ESFELIGN---F-----DCP------L--- 59 (257)
T ss_pred CccccceEEEEEeeCcCC-CCCceeheeeeEccCcCcEEEEEECCC----CCEEEEcC---C-----CCC------C---
Confidence 4579999999 3667 7444 35788899 9999999987544 34555421 1 011 0
Q ss_pred CccchHHHHHHHHHHHHHH--cCCCC-CCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010850 124 QWGHYFICGYKAFYEYVKA--KGLDV-GPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 200 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~--~~~~~-~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~ 200 (499)
-.|.+..+++ .+.+ .+... ..+.|++|.++++||.++|||||||.++|++.+++++++.+++++++.++|.+
T Consensus 60 -~~NLv~kA~~----~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~ 134 (257)
T PRK04181 60 -EENIIYKAYQ----ELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSK 134 (257)
T ss_pred -CCcHHHHHHH----HHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 1266653333 3322 12100 01258999999999999999999999999999999999999999999999988
Q ss_pred HhhhhCCCCCchhhhhhhhh-cCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccc
Q 010850 201 CEQFIGTQSGGMDQAISIMA-KSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLK 257 (499)
Q Consensus 201 ~E~~~g~~~g~~D~~~~~~G-g~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~ 257 (499)
+ +.|...+++| +. -+.......+++++.+.. .++|+.|++.-+|
T Consensus 135 l---------GaDvPffl~~~~~---a~~~G~Ge~l~~l~~~~~-~~~lv~P~~~vsT 179 (257)
T PRK04181 135 V---------GADVAFFISGYKS---ANVSGIGEIVEEFEEEIL-NLEIFTPNIFCST 179 (257)
T ss_pred h---------CCCccEEecCCce---EEEEeeCCeeEECCCCCC-eEEEECCCCCcCH
Confidence 7 5788888888 52 234444455666643222 3889999876543
No 57
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=1.4e-07 Score=89.66 Aligned_cols=54 Identities=33% Similarity=0.542 Sum_probs=51.8
Q ss_pred CCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 150 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 150 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
..|.++.+.|+||.|.||+||+|..||++.|+..++|.+++..+|+++|..+|.
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEP 134 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEP 134 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCC
Confidence 468999999999999999999999999999999999999999999999999993
No 58
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.87 E-value=1.2e-06 Score=84.69 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=108.5
Q ss_pred eEEEccceeeee-----ccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNLI-----GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L~-----GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
...++|+-|.=| |..--..|-.-.+.+++.++++.++.... .++.+.. ...++ +
T Consensus 3 ~~~fvP~hITgfF~pv~~~~p~~SGSiGaGv~l~~gv~v~v~~~~~----~~v~~Ng-------~~~d~--------~-- 61 (283)
T COG1829 3 VRLFVPGHITGFFVPVIGKDPLKSGSIGAGVALERGVTVEVRFGEG----TGVRLNG-------KKIDL--------P-- 61 (283)
T ss_pred ceEeccceeEEEEEeccCCCCccCCCcceeEEecCceeEEEEecCC----ceEEECC-------eeccc--------h--
Confidence 356778777643 33333456667888999999998877665 3444421 11100 0
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
. ...+++.|. +.++.+.+.+++|.|+|+|-|+|.+.+.+.|++..++++ .+..++.|+.+|-
T Consensus 62 ---~-----~~~v~e~L~--------~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV 123 (283)
T COG1829 62 ---I-----TRKVIEKLG--------PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEV 123 (283)
T ss_pred ---h-----HHHHHHHhC--------ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHH
Confidence 1 133444442 246789999999999999999999999999999999865 8889999999986
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCC-----CeeEEeecCCCcEEEEEeCC
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNP-----IRTTDVQLPAGGTFVVAHSL 252 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~-----~~~~~i~~p~~~~~vl~~s~ 252 (499)
..++ |..|..+..+||. . +..+| ..+..++.|. ++++.+..+
T Consensus 124 ~~gt--GLGDVvAq~~GGl--V--iR~~pG~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 124 ENGT--GLGDVVAQYTGGL--V--IRVKPGGPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred HcCC--CchHHHHHhcCcE--E--EEecCCCCCeEEEEEeecCC-ceEEEEEcc
Confidence 5443 5679999999993 3 34333 3667777775 777666554
No 59
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.77 E-value=8.1e-06 Score=81.94 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=62.4
Q ss_pred HHHHHHHHHc-CCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCch
Q 010850 134 KAFYEYVKAK-GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGM 212 (499)
Q Consensus 134 ~~v~~~l~~~-~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~ 212 (499)
+.+++.+++. +. ...+.|...++.|-++||+||||..+|++.|++.+++++++..++-++|+.+ .+..
T Consensus 75 ~~~ld~~R~~~~~----~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~g----SGSa--- 143 (329)
T COG3407 75 RRVLDRFRKEYGI----SFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLG----SGSA--- 143 (329)
T ss_pred HHHHHHHHHhhcc----cceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHh----ccch---
Confidence 5677888753 33 3688999999999999999999999999999999999999999999999884 1111
Q ss_pred hhhhhhhhcC
Q 010850 213 DQAISIMAKS 222 (499)
Q Consensus 213 D~~~~~~Gg~ 222 (499)
.-+++||+
T Consensus 144 --~RS~~Gg~ 151 (329)
T COG3407 144 --SRSIFGGF 151 (329)
T ss_pred --hhhhcCCe
Confidence 12788885
No 60
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.75 E-value=1.2e-06 Score=88.62 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=53.4
Q ss_pred EEEEEe--cCCCCCCCCchHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhhhCCCCCchhhhhhhhhcC
Q 010850 154 DILVDG--TVPTGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 222 (499)
Q Consensus 154 ~i~i~s--~iP~g~GLGSSaA~~va~~~al~~~~~~~l~-~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~ 222 (499)
++.|.| ++|.++|||||||..+|++.|+..+++++++ .+++..+|+. +||.|.- ++|||+
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~--------GSGSa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQ--------GSGSACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhc--------cChHHHH-HhhCCe
Confidence 567777 9999999999999999999999999999999 9999999985 2667777 899994
No 61
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.64 E-value=2.5e-05 Score=76.67 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=51.7
Q ss_pred CeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcC
Q 010850 152 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 222 (499)
Q Consensus 152 g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~ 222 (499)
.++|.-.++.|..+||.||||=-+|++.||+++++++.+++++-.+|++.- |..| =++|||+
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS---GSAC------RSl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS---GSAC------RSLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC---chhh------hhhhcce
Confidence 456666789999999999999999999999999999999999999998831 1111 2789994
No 62
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=67.82 E-value=11 Score=28.81 Aligned_cols=48 Identities=25% Similarity=0.207 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHH
Q 010850 415 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 464 (499)
Q Consensus 415 vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~ 464 (499)
++.+.+..|.+++++.|.--.++|+.. +..+.-+++++++++.+.|.+
T Consensus 21 i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 21 ISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 567789999999999887778999666 778887899999999998865
No 63
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=47.69 E-value=23 Score=29.86 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEccceee
Q 010850 28 AERRFDNLNSKFIQVFAQPPDVYARCPGRVN 58 (499)
Q Consensus 28 ~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~ 58 (499)
...+.+++.+.|.++|+++....+..|..+.
T Consensus 73 ~~~~i~~Ir~~Yk~rF~QeSV~~~~~p~cvs 103 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQESVMRVDQPVCVS 103 (104)
T ss_pred HHHHHHHHHHHHHHHhccceEEEEccceeec
Confidence 6789999999999999999999999998775
No 64
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=39.42 E-value=37 Score=34.33 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHH
Q 010850 415 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 464 (499)
Q Consensus 415 vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~ 464 (499)
+|++.|..++++|.+.|.=..++|+-+ |..|-..+.++++++.++|++
T Consensus 42 l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~~ 89 (317)
T COG2221 42 LSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELRE 89 (317)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHHH
Confidence 456777788888888776567888666 666666667778888877763
No 65
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=20.79 E-value=3.7e+02 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 171 TAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 171 aA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
.-.+.+++.++..++|++++.++|.+-|..+|.
T Consensus 127 P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 127 PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 455667778899999999999999998888874
No 66
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=20.50 E-value=1.9e+02 Score=24.69 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCceeEecCcCC----cceEEEE-EeCCchHHHHHHHHHHHHhcc
Q 010850 419 ELEELVNVCRNNGALGARLTGAGW----GGCVVAL-VKESIDSQFILNLKEQFYQSR 470 (499)
Q Consensus 419 eld~lv~~a~~~Ga~GaklsGaG~----GG~viaL-~~~~~~~~~~~~l~~~~~~~~ 470 (499)
.-+.|.+...+.|....|++..|+ |-+++.+ +++++++++++.+++...++.
T Consensus 12 Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R~ 68 (109)
T PF06153_consen 12 DADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKRE 68 (109)
T ss_dssp HHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--EE
T ss_pred hHHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCce
Confidence 446777777888988899998874 4444444 477899999999999887553
Done!