Query 010850
Match_columns 499
No_of_seqs 188 out of 1472
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:35:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.3E-79 4.3E-84 653.8 44.4 474 7-498 3-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 2.1E-69 7.1E-74 576.4 44.5 458 9-498 19-476 (478)
3 1pie_A Galactokinase; galactos 100.0 2E-56 6.9E-61 469.5 45.9 389 25-498 24-417 (419)
4 1wuu_A Galactokinase; galactos 100.0 9.8E-54 3.3E-58 446.4 41.1 377 28-499 16-399 (399)
5 2cz9_A Probable galactokinase; 100.0 2.1E-49 7.1E-54 406.1 37.6 348 49-496 2-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 4.6E-48 1.6E-52 397.5 23.8 305 48-464 3-321 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 1.1E-44 3.8E-49 377.5 33.4 335 47-498 4-381 (395)
8 3k17_A LIN0012 protein; protei 100.0 5.3E-44 1.8E-48 368.0 34.1 300 48-464 6-341 (365)
9 3gon_A Phosphomevalonate kinas 100.0 5.2E-44 1.8E-48 363.1 31.7 291 48-464 1-318 (335)
10 2pg9_A Phosphomevalonate kinas 100.0 1.2E-42 4.1E-47 354.5 31.8 291 48-464 3-320 (337)
11 4hac_A Mevalonate kinase; GHMP 100.0 2.2E-39 7.4E-44 328.3 35.1 299 48-496 21-320 (321)
12 2hfs_A Mevalonate kinase, puta 100.0 9.9E-38 3.4E-42 317.3 33.5 319 44-496 9-332 (332)
13 2x7i_A Mevalonate kinase; tran 100.0 5.6E-38 1.9E-42 315.8 30.3 287 49-466 7-297 (308)
14 1kkh_A Mevalonate kinase; mixe 100.0 1.1E-36 3.8E-41 307.6 36.2 296 46-463 3-304 (317)
15 2oi2_A Mevalonate kinase; enzy 100.0 6.2E-35 2.1E-39 291.0 29.4 277 48-467 5-284 (292)
16 1h72_C HK, homoserine kinase; 100.0 9E-32 3.1E-36 268.9 29.5 291 49-497 3-296 (296)
17 3pyf_A 4-diphosphocytidyl-2-C- 100.0 2.1E-26 7.2E-31 231.3 30.8 290 48-498 5-301 (306)
18 3hul_A HSK, HK, homoserine kin 100.0 1.2E-26 4E-31 232.4 27.4 284 48-498 2-290 (298)
19 2gs8_A Mevalonate pyrophosphat 99.9 2.8E-25 9.6E-30 224.3 26.0 291 47-496 7-317 (317)
20 2v8p_A 4-diphosphocytidyl-2-C- 99.9 1.1E-25 3.9E-30 222.2 22.5 165 47-255 3-172 (271)
21 3qt5_A Mevalonate diphosphate 99.9 1.2E-24 4.2E-29 220.8 27.4 296 49-497 10-331 (332)
22 1uek_A 4-(cytidine 5'-diphosph 99.9 2.5E-24 8.5E-29 213.0 18.6 158 49-256 2-164 (275)
23 2ww4_A 4-diphosphocytidyl-2C-m 99.9 2.4E-24 8E-29 214.1 15.4 170 49-256 3-180 (283)
24 1fi4_A Mevalonate 5-diphosphat 99.9 5.7E-19 1.9E-23 184.4 32.8 286 49-467 26-348 (416)
25 2hke_A Diphosphomevalonate dec 99.8 1.6E-16 5.4E-21 164.1 30.6 280 50-467 5-319 (380)
26 3lto_A Mevalonate diphosphate 99.7 7.4E-15 2.5E-19 147.4 24.6 201 151-467 91-309 (323)
27 3f0n_A Mevalonate pyrophosphat 99.6 6E-13 2E-17 136.6 27.5 202 151-468 122-346 (414)
28 3m05_A Uncharacterized protein 57.3 19 0.00065 29.7 5.7 54 417-470 15-73 (114)
29 2eg2_A Nitrogen regulatory pro 47.3 34 0.0012 27.7 5.8 67 417-492 10-98 (112)
30 2j9c_A GLNK1, hypothetical nit 47.2 28 0.00097 28.6 5.3 52 417-468 12-85 (119)
31 3bzq_A Nitrogen regulatory pro 46.4 58 0.002 26.3 7.1 67 417-492 12-100 (114)
32 1hwu_A PII protein; herbaspiri 44.5 46 0.0016 26.8 6.2 67 417-492 10-98 (112)
33 1vfj_A Nitrogen regulatory pro 43.2 37 0.0013 27.7 5.4 67 417-492 10-98 (116)
34 2gw8_A PII signal transduction 40.0 68 0.0023 26.0 6.6 67 417-492 12-100 (114)
35 3t9z_A GLNK3, nitrogen regulat 39.9 47 0.0016 27.4 5.6 70 417-495 10-101 (118)
36 2o66_A PII protein; regulation 38.4 46 0.0016 28.2 5.3 67 417-492 22-111 (135)
37 3ncq_A Nitrogen regulatory pro 37.7 48 0.0017 27.4 5.3 70 417-495 10-101 (119)
38 2ns1_B Nitrogen regulatory pro 31.3 89 0.003 25.4 5.9 67 417-492 14-102 (116)
39 4aff_A Nitrogen regulatory pro 27.3 1.2E+02 0.004 24.8 5.9 70 417-495 10-101 (116)
40 2cz4_A Hypothetical protein TT 26.5 88 0.003 25.7 5.0 52 417-468 34-99 (119)
41 3mhy_A PII-like protein PZ; PI 23.6 1.5E+02 0.0052 23.8 5.9 70 417-495 10-101 (112)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.3e-79 Score=653.78 Aligned_cols=474 Identities=32% Similarity=0.537 Sum_probs=392.4
Q ss_pred cCcchhcchhhhhCCchhhHHHHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEE
Q 010850 7 LPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRK 86 (499)
Q Consensus 7 ~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~ 86 (499)
.|||++++|.+ |+++. +++||+++.+.|.+.||.+|.++++|||||+|+|||+||+||+||++||++++++++++
T Consensus 3 ~~vp~~~~~~~-~~~~~----~~~R~~~l~~~F~~~fg~~p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~ 77 (520)
T 3v2u_C 3 TNVPIFSSPVR-DLPRS----FEQKHLAVVDAFFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKI 77 (520)
T ss_dssp CBCCEESCC----CCHH----HHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEE
T ss_pred CCCceeccccc-cCcHH----HHHHHHHHHHHHHHHhCCCCCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEe
Confidence 47899999999 98864 57899999999999999999999999999999999999999999999999999999999
Q ss_pred C--CCcCCcceEEEEeCCCCCCceeecCCCC---cccccccCCccchHHHHHHHHHHHHHHc------CCCCCCCCCeEE
Q 010850 87 H--DSKEAEKVLKIANVSDKYNMCTYPAEPD---QEIDMKHHQWGHYFICGYKAFYEYVKAK------GLDVGPPVGLDI 155 (499)
Q Consensus 87 ~--~~~~~~~~i~i~s~~~~~~~~~~~l~~~---~~~~~~~~~~~~~v~~~i~~v~~~l~~~------~~~~~~~~g~~i 155 (499)
+ ++ ..++|.|.+.++...+|+++.. ..++...+.|.||++++++++..++++. +.. ..||++
T Consensus 78 ~~~~d----~~i~i~S~~~~~~~~~~~l~~~~~~~~i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~---~~G~~i 150 (520)
T 3v2u_C 78 LDEKN----PSITLTNADPKFAQRKFDLPLDGSYMAIDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTP---LVGAQI 150 (520)
T ss_dssp CCCSS----CEEEEEESSTTSCCEEEECCTTCCCCCCCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSC---CCCEEE
T ss_pred ccCCC----CEEEEEECCCCCCceEEEeccCccccccCcccccHHHHHHHHHHHHHHHHHhhcccccccCC---CCceEE
Confidence 7 55 7899998765554456666311 1233345789999999888888888763 233 379999
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCC
Q 010850 156 LVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNP 232 (499)
Q Consensus 156 ~i~s~iP~g~GLGSSaA~~va~~~al~~~~---~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~ 232 (499)
.|.|+||+|+|| |||++||++.|++.++ ++++++.+++++|+++|+++|.+||+|||+++++|+.|+++++||++
T Consensus 151 ~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~ 228 (520)
T 3v2u_C 151 FCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRP 228 (520)
T ss_dssp EEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSS
T ss_pred EEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCC
Confidence 999999999999 9999999999999998 77899999999999999999999999999999999999999999999
Q ss_pred -CeeEEeecCC----CcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCch----hhhhccccchhhhhh
Q 010850 233 -IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKTLSDVEGL 303 (499)
Q Consensus 233 -~~~~~i~~p~----~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~----~~~~~~~~L~~v~~~ 303 (499)
+.++++++|+ ++.|+|++|++.++|+.+++++||.|+.||+.|+++|++++|+... +......+||++.+.
T Consensus 229 ~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~ 308 (520)
T 3v2u_C 229 KLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDA 308 (520)
T ss_dssp SCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHH
T ss_pred CceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHh
Confidence 9999999987 7999999999998899999999999999999999999999886521 111123478888653
Q ss_pred hh--------hhhcc-----CCCCCchhHHHHhhhc--CCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhH
Q 010850 304 CV--------AFACK-----NGSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA 368 (499)
Q Consensus 304 ~~--------~~~~~-----~~~~~~~~~v~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 368 (499)
.. .|.++ ....++.+.+.+.+.+ .+|+.+++.+.++.+.+++.++++..+++ ..+++.+++|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~~~l~~RA 386 (520)
T 3v2u_C 309 YYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQVLKLYQRA 386 (520)
T ss_dssp HHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESCBCHHHHH
T ss_pred hhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--ccccHHHHHHH
Confidence 21 11110 0112244445555554 37898999988886556665555554443 23456789999
Q ss_pred hHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceE
Q 010850 369 AHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCV 446 (499)
Q Consensus 369 ~~~i~E~~rv~~~~~al~~~~--~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~v 446 (499)
+|+++|+.||.+++++|.+++ ++.+|++.||+||+++|.+||++|+||||++|.|+++|++.|++|+||||||||||+
T Consensus 387 ~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~ 466 (520)
T 3v2u_C 387 KHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCT 466 (520)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecCCCCceE
Confidence 999999999999999999863 233579999999999999999999999999999999999999999999999999999
Q ss_pred EEEE---eCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 010850 447 VALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 498 (499)
Q Consensus 447 iaL~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 498 (499)
|+|+ +++.+++++++|.+.|+++++ +.+..+++.+.+|+|+|++||+|+.
T Consensus 467 iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 467 IHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDAIIVSKPALGTCLYE 519 (520)
T ss_dssp EEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHHEEECCCCCCSEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCeEEEecCCCceEEee
Confidence 9999 778999999999999998875 3344445578999999999999974
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=2.1e-69 Score=576.44 Aligned_cols=458 Identities=40% Similarity=0.649 Sum_probs=378.3
Q ss_pred cchhcchhhhhCCchhhHHHHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECC
Q 010850 9 VPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHD 88 (499)
Q Consensus 9 ~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~ 88 (499)
||++++|.+||++ . +++++||+++++.|.+.||.+|.++++||||++|+|||+||+|+++|++||++++++.+++++
T Consensus 19 ~~~~~~~~~~y~~--~-~~~~~r~~~~~~~f~~~fg~~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~ 95 (478)
T 2a2c_A 19 GHMATESPATRRV--Q-VAEHPRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVK 95 (478)
T ss_dssp ---CCCCCCEEEE--C-GGGCHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECS
T ss_pred eecccchHhhccc--c-HHHHHHHHHHHHHHHHHhCCCCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECC
Confidence 8899999999986 2 347789999999999999999999999999999999999999999999999999999999987
Q ss_pred CcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCC
Q 010850 89 SKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLS 168 (499)
Q Consensus 89 ~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLG 168 (499)
+ +.++|.+.+.+|+..+++++.. ..+..++.|.||+.+++++++..+.. + . ..|+++.|+|+||+++|||
T Consensus 96 ~----~~i~i~~~~~~~~~~~~~~~~l-~~~~~~~~~~n~v~~a~~~v~~~~~~-~-~---~~g~~i~i~s~IP~g~GLg 165 (478)
T 2a2c_A 96 T----YALQLANTNPLYPDFSTSANNI-QIDKTKPLWHNYFLCGLKGIQEHFGL-S-N---LTGMNCLVDGNIPPSSGLS 165 (478)
T ss_dssp S----SCEEEEESSTTSCCEEECCCCC---CCSSCCHHHHHHHHHHHHHHHTTC-C-S---CCCEEEEEEECSCTTSSSC
T ss_pred C----CeEEEEECCCCCcceeccchhc-ccCCCcccHHHHHHHHHHHHHHHHhc-c-C---CCceEEEEECCCCCCCCch
Confidence 7 6788877653333222322211 11234578999999888888776643 1 1 3799999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEE
Q 010850 169 SSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVV 248 (499)
Q Consensus 169 SSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl 248 (499)
||||++||++.|++.+++.++++++++++|..+|+++|.++|+|||+++++|+.|.+++++|+|....++++|+++.|+|
T Consensus 166 SSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~~~~~~~~~~~~vi 245 (478)
T 2a2c_A 166 SSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVI 245 (478)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEEcCCCceEEecCCCCcEEEE
Confidence 99999999999999999999999999999999999899999999999999997778999999998889999998999999
Q ss_pred EeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCC
Q 010850 249 AHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEP 328 (499)
Q Consensus 249 ~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~ 328 (499)
++|+++++|..+ ++||.|+.||+.|+++|.+..|+.+ ..+++|+++++.+ ...+.++++.|++.+.+.+
T Consensus 246 ~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L~~~~~~~~----~~~~~l~d~~~~~-----~~~~~~~v~~v~~~~~~~~ 314 (478)
T 2a2c_A 246 ANSCVEMNKAAT--SHFNIRVMECRLAAKLLAKYKSLQW----DKVLRLEEVQAKL-----GISLEEMLLVTEDALHPEP 314 (478)
T ss_dssp EECCCCCCGGGS--SHHHHHHHHHHHHHHHHHHHTTCCT----TTCCCHHHHHHHH-----TCCHHHHHHHHHHHSCSSC
T ss_pred EeCCCccccccc--chhHHHHHHHHHHHHHHHhhhcccc----cccchHHhhhhhh-----cccHHHHHHHHHHhccccc
Confidence 999998765443 7999999999999999999887654 3457888886432 1234468899999998888
Q ss_pred CCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHh
Q 010850 329 YTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHS 408 (499)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~ 408 (499)
++.+++.+.+|...+++.+.+++..+. ..+++.+++|+.|+++|+.|+.+++++|.+. .++|++.||++|+++|++
T Consensus 315 ~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~--~~~d~~~lg~lm~~sh~s 390 (478)
T 2a2c_A 315 YNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEA--PENMVQLLGELMNQSHMS 390 (478)
T ss_dssp BCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHH
Confidence 888888888887666666655544331 2233567899999999999999999999971 123899999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe
Q 010850 409 CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS 488 (499)
Q Consensus 409 lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (499)
+|++|+||||++|+|++.+++.|++|+||||||||||+++|++++.+++++++|++.|++..+....+ ..+.+|++
T Consensus 391 lr~l~~vs~peld~l~~~a~~~Ga~GarltGAG~GG~viaLv~~~~~~~~~~~l~~~y~~~~~~~~~~----~~~~~~~~ 466 (478)
T 2a2c_A 391 CRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLAP----EKQSLFAT 466 (478)
T ss_dssp HHHTSCCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEEEEEGGGHHHHHHHHHHHHHC-------------CCSEEEE
T ss_pred HHhcccCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEEEEcHHHHHHHHHHHHHHHHHhcCccccC----CCCcEEEE
Confidence 99999999999999999999999999999999999999999998889999999999998765200001 13478999
Q ss_pred eCCCceeecc
Q 010850 489 KPSSGAAKFK 498 (499)
Q Consensus 489 ~p~~Ga~v~~ 498 (499)
+|++||+++.
T Consensus 467 ~p~~Ga~~~~ 476 (478)
T 2a2c_A 467 KPGGGALVLL 476 (478)
T ss_dssp CCBCCCEEEE
T ss_pred cCCCCeEeec
Confidence 9999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=2e-56 Score=469.51 Aligned_cols=389 Identities=28% Similarity=0.440 Sum_probs=315.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCC-eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCC
Q 010850 25 LEEAERRFDNLNSKFIQVFAQPPD-VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSD 103 (499)
Q Consensus 25 ~~~~~~~~~~~~~~f~~~f~~~~~-~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~ 103 (499)
.+++.+|++++.+.|.+.||.+|+ ++++||||++|+|||+||+|+++|++||+++++++++++++ ..+++.+.+.
T Consensus 24 ~~~~~~~~~~~~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~----~~i~i~~~~~ 99 (419)
T 1pie_A 24 VVENSTVLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLRED----KKVKLYSENF 99 (419)
T ss_dssp -----CHHHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSS----SEEEEEETTC
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCC----CEEEEEECCC
Confidence 456888999999999999999999 99999999999999999999999999999999999999877 6788876532
Q ss_pred C-CCceeecCCCCcccccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHH
Q 010850 104 K-YNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALM 182 (499)
Q Consensus 104 ~-~~~~~~~l~~~~~~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~ 182 (499)
. ....+++++... +.....|.||+. +++..|++.+... ..|++|.+.++||+++|||||||+++|++.|++
T Consensus 100 ~~~~~~~~~~~~~~--~~~~~~~~n~v~----~~~~~l~~~g~~~--~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~ 171 (419)
T 1pie_A 100 PKLGVIEFDLDEVE--KKDGELWSNYVK----GMIVMLKGAGYEI--DKGFELLIKGEIPTASGLSSSASLELLVGVVLD 171 (419)
T ss_dssp GGGCCEEEETTCTT--SCCTTCTHHHHH----HHHHHHHHTTCCC--CSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHH
T ss_pred CCcceeEEeccccc--CCCCcCHHHHHH----HHHHHHHHhCCCC--CCCEEEEEECCCCCCCChhHHHHHHHHHHHHHH
Confidence 1 011234443210 112367999984 4555666654431 379999999999999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecC-CCcEEEEEeCCCccccccc
Q 010850 183 AAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP-AGGTFVVAHSLAESLKAIT 260 (499)
Q Consensus 183 ~~~~~~l~~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p-~~~~~vl~~s~~~~~~~~~ 260 (499)
.++++++++++++++|.++|+ +.|.++|+||++++++||.+.++++++.+..++++++| +++.++|++|+++++ +
T Consensus 172 ~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~l~~~~~~~~~vl~~~~~~~~---t 248 (419)
T 1pie_A 172 DLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKPRA---L 248 (419)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEEEEEECCCCCC---T
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCCCceEEeecCCCCcEEEEEECCCccc---c
Confidence 999999999999999999997 67889998999999999988888889888888899887 689999999998754 5
Q ss_pred ccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhh
Q 010850 261 AASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEE 340 (499)
Q Consensus 261 ~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~ 340 (499)
.++.||.|+.||+.+.+++....+ ++.|+++.. +++..+..
T Consensus 249 ~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~~-----------------------------~~~~~~~~- 289 (419)
T 1pie_A 249 TESKYNERFAETREALKRMQTRLD---------IQSLGELSN-----------------------------EEFDANTD- 289 (419)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCCH-----------------------------HHHHHTGG-
T ss_pred ccchHHHHHHHHHHHHHHHhhccc---------cCchhhCCH-----------------------------HHHHHHHh-
Confidence 567899999999999988875422 122332211 11111100
Q ss_pred hhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHH
Q 010850 341 KLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL 420 (499)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~pel 420 (499)
.+ .++..++|+.|+++|+.|+.+++++|.++ |++.||++|+++|.++++.+++++|++
T Consensus 290 -----------~l------~~~~~~~~~~~~v~e~~r~~~~~~al~~~-----d~~~lg~lm~~~~~~l~~~~~~~~p~l 347 (419)
T 1pie_A 290 -----------LI------GDETLIKRARHAVYENNRTKIAQKAFVAG-----NLTKFGELLNASHASLKDDYEVTGLEL 347 (419)
T ss_dssp -----------GT------CCHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTSCCCCHHH
T ss_pred -----------hc------CcHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhCCCCHHH
Confidence 00 01235678899999999999999999986 699999999999999999889999999
Q ss_pred HHHHHHHHhC-CCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 010850 421 EELVNVCRNN-GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 498 (499)
Q Consensus 421 d~lv~~a~~~-Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 498 (499)
|.|++.+++. |++|+||||||||||+++|++++.++++.++|++.|++..+ .++.+|+++|++||++++
T Consensus 348 ~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g---------~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 348 DTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEVVG---------YPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp HHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHHHS---------SCCEEEECCBCCCSBCC-
T ss_pred HHHHHHHHhcCCCceeeEecCCCCeEEEEEEchhhHHHHHHHHHHHHHHhcC---------CCCeEEEEcCCCCeeecc
Confidence 9999999997 99999999999999999999988899999999998887542 356899999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=9.8e-54 Score=446.35 Aligned_cols=377 Identities=28% Similarity=0.431 Sum_probs=304.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCC--C
Q 010850 28 AERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDK--Y 105 (499)
Q Consensus 28 ~~~~~~~~~~~f~~~f~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~--~ 105 (499)
...+++++.+.|.+.||.+|.++++||||++|+|||+||+|+.+|++||++++++.++++++ ..+++.+.+.. +
T Consensus 16 ~~~~~~~~~~~f~~~~~~~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~----~~i~i~~~~~~~~~ 91 (399)
T 1wuu_A 16 VAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKD----GLVSLLTTSEGADE 91 (399)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETT----CEEEEEECCSSSCS
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCC----CeEEEEECCCCCcc
Confidence 34688899999999999999999999999999999999999999999999999999998877 67888775421 1
Q ss_pred C-ceeecCCCCcc-cccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHH
Q 010850 106 N-MCTYPAEPDQE-IDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMA 183 (499)
Q Consensus 106 ~-~~~~~l~~~~~-~~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~ 183 (499)
. ..+++++.... .......|.||+.. ++..+ .+.. ..|+++.++|+||+++|||||||+++|++.|++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~n~v~~----a~~~l--~~~~---~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~ 162 (399)
T 1wuu_A 92 PQRLQFPLPTAQRSLEPGTPRWANYVKG----VIQYY--PAAP---LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQ 162 (399)
T ss_dssp CSEEEEECCCSSCCCCCCSSGGGHHHHH----HHHHC--SSSC---CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHH
T ss_pred ccceEEecCccccccccCCCCHHHHHHH----HHHHh--cCCC---CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHH
Confidence 0 01244331000 01224569999853 44444 3433 3799999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCC-CcEEEEEeCCCcccccccc
Q 010850 184 AFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITA 261 (499)
Q Consensus 184 ~~~~~l~~~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~-~~~~vl~~s~~~~~~~~~~ 261 (499)
+++.++++++++++|..+|+ +.|.++|+|||+++++||.+.++++++.+..++++++|. ++.++|++|+++++ |.
T Consensus 163 l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~---t~ 239 (399)
T 1wuu_A 163 LCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHS---LA 239 (399)
T ss_dssp HSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSEEEEEEEEEEEC-----C
T ss_pred HhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecCCCceEEecCCCCCeEEEEEECCCccc---cc
Confidence 99999999999999999998 778888889999999999888888998888888888874 89999999998654 55
Q ss_pred cccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhh
Q 010850 262 ASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEK 341 (499)
Q Consensus 262 ~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~ 341 (499)
.+.||.|+.||+.++++++.. .++++.. +.+.+.+.
T Consensus 240 ~~~y~~r~~~~~~a~~~l~~~-------------~l~~~~~-----------------------------~~~~~~~~-- 275 (399)
T 1wuu_A 240 SSEYPVRRRQCEEVARALGKE-------------SLREVQL-----------------------------EELEAARD-- 275 (399)
T ss_dssp TTTHHHHHHHHHHHHHHTTCS-------------STTSCCH-----------------------------HHHTTGGG--
T ss_pred cccHHHHHHHHHHHHHHhChh-------------hhhcCCH-----------------------------HHHHHHHh--
Confidence 678999999999887766321 1222110 11110000
Q ss_pred hhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHH
Q 010850 342 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELE 421 (499)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld 421 (499)
.-+...++|+.|++.|+.|+.+++++|.++ |++.||++|+++|+++++.+++++|++|
T Consensus 276 -----------------~l~~~~~~r~~~~~~e~~r~~~~~~al~~~-----d~~~lg~~m~~~h~~l~~~~~~~~p~l~ 333 (399)
T 1wuu_A 276 -----------------LVSKEGFRRARHVVGEIRRTAQAAAALRRG-----DYRAFGRLMVESHRSLRDDYEVSCPELD 333 (399)
T ss_dssp -----------------GSCHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTSCCCCHHHH
T ss_pred -----------------hcCHHHHHHHHHHHhhHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 001124678899999999999999999986 6999999999999999988899999999
Q ss_pred HHHHHHHh-CCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 010850 422 ELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 499 (499)
Q Consensus 422 ~lv~~a~~-~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 499 (499)
.+++.+++ .|++|+||||||||||+++|++++.++++.++|++.| + ..+.+|++.|++|++++.|
T Consensus 334 ~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~l~~~~---~----------~~~~~~~~~~~~Ga~~~~~ 399 (399)
T 1wuu_A 334 QLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY---G----------GTATFYLSQAADGAKVLCL 399 (399)
T ss_dssp HHHHHHHTSTTEEEEEECSSCSEEEEEEEEEGGGHHHHHHHHHHHC---S----------SCCEEEEECCCCCSEECCC
T ss_pred HHHHHHHhcCCceEEeeecCCCccEEEEEEccchHHHHHHHHHHHh---C----------CCCcEEEEcCCCCeeeccC
Confidence 99999999 7999999999999999999999888899999998776 2 2468999999999998743
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=2.1e-49 Score=406.08 Aligned_cols=348 Identities=25% Similarity=0.382 Sum_probs=281.5
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccch
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHY 128 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (499)
++++|||||+|+|||+||+|+++|++||++++++++++.++ ..+++.+.+.. ...++ ++. ...+.|.|+
T Consensus 2 ~~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~----~~i~i~~~~~~-~~~~~-l~~-----~~~~~~~~~ 70 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGE----VILYSEHFGEE-RKFSL-NDL-----RKENSWIDY 70 (350)
T ss_dssp EEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESS----EEEEETTTTEE-EEECT-TCC-----CCCSSTHHH
T ss_pred eEEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCC----CeEEEEECCCC-ccccc-cCC-----CCCCcHHHH
Confidence 57899999999999999999999999999999999998776 56777442210 00011 210 123678888
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hhCC
Q 010850 129 FICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGT 207 (499)
Q Consensus 129 v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~-~~g~ 207 (499)
+. .++..+++.+.. ..|++|.++++||.++|||||||+++|++.|++++++.++++++++++|..+|. +.|.
T Consensus 71 ~~----~~~~~l~~~~~~---~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~ 143 (350)
T 2cz9_A 71 VK----GIFWVLKESDYE---VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGV 143 (350)
T ss_dssp HH----HHHHHHHHTTCC---CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HH----HHHHHHHhcCCC---CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 74 455556655543 379999999999999999999999999999999999999999999999999997 7899
Q ss_pred CCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCc
Q 010850 208 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKP 287 (499)
Q Consensus 208 ~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~ 287 (499)
++|++|++++.+|+.++++++++.+..++++++|+++.++|++|+++++ +.+..|+.|+.+|+.++++++.
T Consensus 144 ~~gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~~~~~~vl~~~~~~~~---~~t~~~~~r~~~~~~a~~~~~~------ 214 (350)
T 2cz9_A 144 PCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRRE---LASSEYAERKHIAEESLKILGK------ 214 (350)
T ss_dssp CCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC------
T ss_pred CccchhHHHHHhcCCCeEEEEecCCCcEEEEcCCCCcEEEEEECCCCCc---cccchHHHHHHHHHHHHHHhCh------
Confidence 9999999999999988899999988888899998899999999998643 3445699999999998876631
Q ss_pred hhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhh
Q 010850 288 QEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQR 367 (499)
Q Consensus 288 ~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (499)
++||++... ++ . .+ +..++++
T Consensus 215 -------~~lr~~~~~-----------------------------~~-~-------~l---------------~~~~~~~ 235 (350)
T 2cz9_A 215 -------GSSKEVREG-----------------------------EL-S-------KL---------------PPLHRKF 235 (350)
T ss_dssp -------SCGGGCCGG-----------------------------GG-G-------GS---------------CHHHHHH
T ss_pred -------hhhhhCCHH-----------------------------HH-h-------hC---------------CHHHHHH
Confidence 223322110 00 0 00 0113456
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEE
Q 010850 368 AAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 447 (499)
Q Consensus 368 ~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi 447 (499)
..|++.|..|+.+++++|.++ |++.||++|+++|+.+++.+++++|+++.+++.+++.|++|+||||||||||++
T Consensus 236 ~~~~~~~~~~~~~~~~al~~~-----d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG~G~~v~ 310 (350)
T 2cz9_A 236 FGYIVRENARVLEVRDALKEG-----NVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAI 310 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEE
T ss_pred HHHHhhHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCCCceEEE
Confidence 778888888999999999986 699999999999999999789999999999999999999999999999999999
Q ss_pred EEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 010850 448 ALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 496 (499)
Q Consensus 448 aL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 496 (499)
+|++++.++++.++|++.|++.++ +.+.+|+++|++||++
T Consensus 311 ~l~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 311 ALVDKEDAETIGEEILREYLKRFP---------WKARHFIVEPSDGVGI 350 (350)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHCC---------SCCEEEEECEECCSBC
T ss_pred EEEchhhHHHHHHHHHHHHHHhhC---------CCCcEEEecCCCCCCC
Confidence 999988889999999998877532 3668999999999974
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-48 Score=397.46 Aligned_cols=305 Identities=17% Similarity=0.236 Sum_probs=223.9
Q ss_pred CeEEEccceeeeecccccc------CCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccc
Q 010850 48 DVYARCPGRVNLIGEHIDY------EGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMK 121 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~------~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (499)
.++++|||||+|+|||+|| +||.+|++|||++++++++++++ ..++|.+.+.. ...+|+++. . ..
T Consensus 3 mi~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d----~~i~i~s~~~~-~~~~~~~~~--~--~~ 73 (357)
T 3k85_A 3 LVRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNS----GRIEINAYDAQ-CCKSYLSMS--Q--LE 73 (357)
T ss_dssp CEEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSS----SEEEEEETTTT-EEEEEECCS--S--CC
T ss_pred EEEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCC----CeEEEEECCCC-ceEEEeccc--c--cc
Confidence 5789999999999999999 89999999999999999999988 78999886421 122454432 1 13
Q ss_pred cCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 122 HHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 122 ~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
...|.||+. +++..+++.+.. ...|+++.+.++||.++|||||||+++|++.|+++++++++++++++++|.++
T Consensus 74 ~~~~~~~v~----~~~~~l~~~~~~--~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~ 147 (357)
T 3k85_A 74 IDGEASLIK----GVYNRIIRDYRL--EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEI 147 (357)
T ss_dssp CCSSSHHHH----HHHHHHHHHTTC--CCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred ccchHHHHH----HHHHHHHHhcCC--CCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 467999985 455566655532 13799999999999999999999999999999999999999999999999999
Q ss_pred hh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCC------cEEEEEeCCCcccccccccccchhHHHHHHH
Q 010850 202 EQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRL 274 (499)
Q Consensus 202 E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~------~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~ 274 (499)
|+ +.|.+||.+||+++++||...+.+.++.+..++++++|++ +.++|++|+.++++..
T Consensus 148 E~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~--------------- 212 (357)
T 3k85_A 148 ERKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAA--------------- 212 (357)
T ss_dssp HHTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC-----------------------
T ss_pred HHHHccCCCcHHHHHHHHhCCceEEEEeCCCceeEEEEecChhhhhhcCceEEEEECCCcccHHH---------------
Confidence 98 7899999999999999997544444555566778887753 6789999987543211
Q ss_pred HHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchh
Q 010850 275 TAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLD 354 (499)
Q Consensus 275 a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (499)
+++. +.+.+.+.
T Consensus 213 ---~l~~--------------------------------------~~~~~~~~--------------------------- 224 (357)
T 3k85_A 213 ---IINE--------------------------------------QKKNTSEG--------------------------- 224 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHH--------------------------------------HHHHhhcC---------------------------
Confidence 1100 00000000
Q ss_pred hhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhh-cCCCCHHHHHHHHHHHhCCCc
Q 010850 355 VLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGAL 433 (499)
Q Consensus 355 ~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~-~~vs~peld~lv~~a~~~Ga~ 433 (499)
...+.++.|.+.| ++.+++++|.++ |++.||++|+++|++++++ +++|||++|.|++.|++.|++
T Consensus 225 -------~~~~~~~~~~i~~--~~~~~~~aL~~~-----d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~ 290 (357)
T 3k85_A 225 -------NQTAIEAMHKIKQ--SAIDTKLALLKG-----DVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAM 290 (357)
T ss_dssp --------CCTTHHHHHHHH--HHHHHHHHHTTT-----CHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCS
T ss_pred -------cHHHHHHHHHHHH--HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCe
Confidence 0012445666654 777889999986 7999999999999999987 899999999999999999999
Q ss_pred eeEecCcCCcceEEEEEeCCchHHHHHHHHH
Q 010850 434 GARLTGAGWGGCVVALVKESIDSQFILNLKE 464 (499)
Q Consensus 434 GaklsGaG~GG~viaL~~~~~~~~~~~~l~~ 464 (499)
|+||||||+|||+++|++++.++++.++|++
T Consensus 291 GaklsGaG~gG~vial~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 291 AGKVSGAGGGGFIMFVVEPTRKEEVVRALNN 321 (357)
T ss_dssp EEEECCCC---CEEEECCHHHHHHHHHHHHT
T ss_pred EeEecccCCCCEEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999987777788877754
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=1.1e-44 Score=377.48 Aligned_cols=335 Identities=20% Similarity=0.233 Sum_probs=246.5
Q ss_pred CCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccc--------
Q 010850 47 PDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEI-------- 118 (499)
Q Consensus 47 ~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~-------- 118 (499)
|.++++|||||+|+|||+||+|+++|++||++++++.++++++ +.+++.+.+.+. ..+|+++.....
T Consensus 4 ~~~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~----~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (395)
T 1kvk_A 4 EVLLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSN----GKVSLNLPNVGI-KQVWDVATLQLLDTGFLEQG 78 (395)
T ss_dssp SCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSS----SEEEEEETTTTE-EEEEEHHHHHTSCC------
T ss_pred CcEEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCC----CeEEEEcCCCCc-eEEEEhHhhhhhhccccccc
Confidence 5688999999999999999999999999999999999999887 678887643211 112222110000
Q ss_pred -------------c--cccCCccchH-HHHHHHHHHHHHH-cCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHH
Q 010850 119 -------------D--MKHHQWGHYF-ICGYKAFYEYVKA-KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVAL 181 (499)
Q Consensus 119 -------------~--~~~~~~~~~v-~~~i~~v~~~l~~-~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al 181 (499)
. .....|.+|+ ..+++.++..+.. .+.. ....|+++.++++||.++|||||||+++|++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~-~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al 157 (395)
T 1kvk_A 79 DVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQ-RTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAAL 157 (395)
T ss_dssp ----------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHHHTTS-SSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHhccc-cCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHH
Confidence 0 0123788984 1233444444433 2320 0136999999999999999999999999999999
Q ss_pred HHHhCC-----CCC-------H---HHHHHHHHHHhh-hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcE
Q 010850 182 MAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGT 245 (499)
Q Consensus 182 ~~~~~~-----~l~-------~---~~l~~~a~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~ 245 (499)
+.+++. +++ + .+++++|..+|+ +.|.++|. |++++++||. ++ +++..++++++|+++.
T Consensus 158 ~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~---~~--~~~~~~~~l~~~~~~~ 231 (395)
T 1kvk_A 158 LTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGA---LR--YQQGKMSSLKRLPALQ 231 (395)
T ss_dssp HHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSE---EE--ESSSCEEECSCCCCEE
T ss_pred HHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcce---EE--EcCCCceeccCCCCcE
Confidence 999998 788 7 556677899998 67888776 9999999984 33 3455677877777899
Q ss_pred EEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhh
Q 010850 246 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLR 325 (499)
Q Consensus 246 ~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~ 325 (499)
++|++|++++++... ++.+++...
T Consensus 232 ~vl~~~~~~~~T~~~--------------------------------------------------------~~~~~~~~~ 255 (395)
T 1kvk_A 232 ILLTNTKVPRSTKAL--------------------------------------------------------VAGVRSRLI 255 (395)
T ss_dssp EEEEECCCCCCHHHH--------------------------------------------------------HHHHHHHHH
T ss_pred EEEEECCCCCchHHH--------------------------------------------------------HHHHHHHHH
Confidence 999999987653210 000011000
Q ss_pred cCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHH
Q 010850 326 KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAF-KDTVSSNLSEEDKLKKLGDLMND 404 (499)
Q Consensus 326 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~-~~al~~~~~~~~d~~~lg~lm~~ 404 (499)
..+ +.+ ...++++.|++.|+.|+... +.+|.+ +|++.||++|++
T Consensus 256 ~~~---~~~---------------------------~~~~~~~~~~~~~~~~~l~~~~~al~~-----~d~~~lg~lm~~ 300 (395)
T 1kvk_A 256 KFP---EIM---------------------------APLLTSIDAISLECERVLGEMAAAPVP-----EQYLVLEELMDM 300 (395)
T ss_dssp HSH---HHH---------------------------HHHHHHHHHHHHHHHHHHHHHTTCCCH-----HHHHHHHHHHHH
T ss_pred HCH---HHH---------------------------HHHHHHHHHHHHHHHHHHHhhhccccH-----HHHHHHHHHHHH
Confidence 000 000 01356778888888776544 455554 589999999999
Q ss_pred HhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcce
Q 010850 405 SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLY 484 (499)
Q Consensus 405 sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 484 (499)
+|.++++ +++++|++|.+++.+++.|+ |+||||||||||+++|++++..+++.+++.+.|.+.++ .
T Consensus 301 ~~~~l~~-~~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~------------~ 366 (395)
T 1kvk_A 301 NQHHLNA-LGVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGF------------D 366 (395)
T ss_dssp HHHHHHH-HTCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTC------------E
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHcCC------------E
Confidence 9999997 79999999999999999999 99999999999999999888788889999888876432 4
Q ss_pred EEEee-CCCceeecc
Q 010850 485 VFASK-PSSGAAKFK 498 (499)
Q Consensus 485 ~~~~~-p~~Ga~v~~ 498 (499)
+|+++ ++.|+++..
T Consensus 367 ~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 367 CWETSIGAPGVSMHS 381 (395)
T ss_dssp EEEEEESCCCSEEEC
T ss_pred EEEEecCCCcEEEEe
Confidence 77777 677998864
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=5.3e-44 Score=368.04 Aligned_cols=300 Identities=15% Similarity=0.261 Sum_probs=230.6
Q ss_pred CeEEEccceeeeecccccc-CCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCC-ceeecCCCCcccccccCCc
Q 010850 48 DVYARCPGRVNLIGEHIDY-EGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYN-MCTYPAEPDQEIDMKHHQW 125 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~-~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~-~~~~~l~~~~~~~~~~~~~ 125 (499)
.++++||||++|+|||+|| +|+++|++||+++++++++++++ . +|.+.+ |. ..+++++. .++...+.|
T Consensus 6 ~i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~----~--~i~s~~--~~~~~~~~~~~--~~~~~~~~~ 75 (365)
T 3k17_A 6 KLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSER----N--ELWIPH--YENPVSWPIGG--ELKPDGEHW 75 (365)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS----C--EEECTT--CSSCBCCCTTS--CCCCSCGGG
T ss_pred EEEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCC----c--EEEecC--CCcceeeeccc--CCCCCCChH
Confidence 5789999999999999999 59999999999999999999887 4 455533 21 12232221 122234567
Q ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCC----CCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 126 GHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPT----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 126 ~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~----g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
+|+.++++.+.+++.+.+.. ..|+++.|.|+||. ++|||||||+++|++.|+++++++++++++++++|+.+
T Consensus 76 -~yv~~~i~~~~~~~~~~g~~---~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~ 151 (365)
T 3k17_A 76 -TFTAEAINIATTFLKSEGIE---LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALS 151 (365)
T ss_dssp -HHHHHHHHHHHHHHHHTTCC---CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhcCCC---CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 99998888887788777764 37999999999996 57999999999999999999999999999999999999
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeecC----------------------CCeeEEeecCCCcEEEEEeCCCcccccc
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAI 259 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~----------------------~~~~~~i~~p~~~~~vl~~s~~~~~~~~ 259 (499)
|+..++++|++|++++++||. +.+-.+. ...++++++|.+ .++|++|++++++..
T Consensus 152 E~~~~g~~~g~D~~~~~~Gg~--~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~~~sT~~ 228 (365)
T 3k17_A 152 HLVVQGNGSCGDIASCMYGGW--IAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGTPVSTGK 228 (365)
T ss_dssp HHHHHSSCCSHHHHHHHHCSE--EEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSCCCCHHH
T ss_pred HHHhCCCCCcccHHHHhcCCE--EEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCCccchHH
Confidence 985544889999999999994 2222232 346778888878 999999998765321
Q ss_pred cccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhh
Q 010850 260 TAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITE 339 (499)
Q Consensus 260 ~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~ 339 (499)
+++.|++.....
T Consensus 229 --------------------------------------------------------~~~~v~~~~~~~------------ 240 (365)
T 3k17_A 229 --------------------------------------------------------LVSQIHAFKQED------------ 240 (365)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHC------------
T ss_pred --------------------------------------------------------HHHHHHHHHHhC------------
Confidence 001111111000
Q ss_pred hhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCC---
Q 010850 340 EKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC--- 415 (499)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~-~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~v--- 415 (499)
-.+..++++|. .++.+++++|.++ |++.||++|+++|+++|++ ++
T Consensus 241 -------------------------~~~~~~~~~~~~~~~~~~~~aL~~g-----d~~~lg~lm~~~~~~l~~l-~v~~~ 289 (365)
T 3k17_A 241 -------------------------SKNYQHFLTRNNEIMKQIIQAFHTK-----DEELLYSSIKENRRILQEL-GTKAG 289 (365)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHH-HHHHT
T ss_pred -------------------------hHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHh-hhhcC
Confidence 01134555664 3578889999976 7999999999999999985 55
Q ss_pred ---CCHHHHHHHHHHHhCCCceeEecCcCCcceEEEEEeCC-chHHHHHHHHH
Q 010850 416 ---SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 464 (499)
Q Consensus 416 ---s~peld~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~-~~~~~~~~l~~ 464 (499)
++|++|.|++.+++.|++ +||||||||||+++|++++ .++++.++|++
T Consensus 290 ~~is~p~ld~l~~~a~~~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 290 VNIETSLLKELADSAENMGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp CCCSCHHHHHHHHHHHHTTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHhcCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999763 35555555543
No 9
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=5.2e-44 Score=363.14 Aligned_cols=291 Identities=17% Similarity=0.149 Sum_probs=223.3
Q ss_pred CeEEEccceeeeeccccccC-CCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCcc
Q 010850 48 DVYARCPGRVNLIGEHIDYE-GYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWG 126 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~-G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (499)
++.++||||++|+|||+|++ |+++|++|||+|+++.++++++ ..+ .+....+ .+++ ..+.+.
T Consensus 1 mi~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~----~~i--~~~~~~~---~~~~--------~~~~~~ 63 (335)
T 3gon_A 1 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS----YRI--YSDMFDF---AVDL--------RPNPDY 63 (335)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS----CEE--EETTSSS---CBCS--------SCCTTT
T ss_pred CEEEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCC----CEE--EEeCCCc---cccc--------CcCCCc
Confidence 46899999999999999998 9999999999999999999887 444 3322111 1111 112233
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCC---CCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 127 HYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 127 ~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g---~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
+++..+++.+..++++.+.. .+|+++.|.|++|.+ +|||||||++||++.+++.++++++++++++++|+.+|+
T Consensus 64 ~~~~~~i~~~~~~l~~~~~~---~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~ 140 (335)
T 3gon_A 64 SLIQETIALMGDFLAVRGQN---LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL 140 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---CCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHH
Confidence 67777788888888887765 489999999999987 699999999999999999999999999999999999999
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecC---------------------CCeeEEeecCCCcEEEEEeCCCccccccccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFN---------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAA 262 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~---------------------~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~ 262 (499)
..++.+|+|||+++++||. +.|..++ +....+++.|.++.+++++++.+.++..
T Consensus 141 ~~~g~~sg~D~a~a~~Gg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~--- 215 (335)
T 3gon_A 141 KRGDNGSMGDLACIAAEDL--VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSH--- 215 (335)
T ss_dssp HTTCCSCSHHHHHHHHTSC--EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHH---
T ss_pred HhcCCCCCCCcceeecCCe--EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHHH---
Confidence 7777788899999999996 3333322 1245566777789999999987644211
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhh
Q 010850 263 SNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKL 342 (499)
Q Consensus 263 ~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~ 342 (499)
+++.+++. ...
T Consensus 216 -----------------------------------------------------~v~~v~~~-----~~~----------- 226 (335)
T 3gon_A 216 -----------------------------------------------------MVQQIKQN-----INQ----------- 226 (335)
T ss_dssp -----------------------------------------------------HHHHHGGG-----CCH-----------
T ss_pred -----------------------------------------------------HHHHHHHH-----hHH-----------
Confidence 00011000 000
Q ss_pred hhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhc-CCCCHHHH
Q 010850 343 TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELE 421 (499)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-~vs~peld 421 (499)
.++.....++.++..+|.++ |++.||++|+++|+++++++ +++||++|
T Consensus 227 --------------------------~~~~~~~~~~~~~~~aL~~~-----d~~~lg~lm~~~h~~l~~l~~~is~p~ld 275 (335)
T 3gon_A 227 --------------------------NFLTSSKETVVSLVEALEQG-----KSEKIIEQVEVASKLLEGLSTDIYTPLLR 275 (335)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCTTTCCHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 01112234677788999876 79999999999999999964 89999999
Q ss_pred HHHHHHHhCCCceeEecCcCCcceEEEEEeCC-chHHHHHHHHH
Q 010850 422 ELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 464 (499)
Q Consensus 422 ~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~-~~~~~~~~l~~ 464 (499)
.|++.|++.|+ |+||||||||||+|+|++++ .++++.++|++
T Consensus 276 ~l~~~a~~~g~-~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 276 QLKEASQDLQA-VAKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp HHHHTTTTSSE-EEEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCc-EEEEccccchheEEEEECCHHHHHHHHHHHHH
Confidence 99999999996 89999999999999999753 34455555543
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=1.2e-42 Score=354.48 Aligned_cols=291 Identities=16% Similarity=0.168 Sum_probs=226.3
Q ss_pred CeEEEccceeeeeccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCcc
Q 010850 48 DVYARCPGRVNLIGEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWG 126 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (499)
.+.++||||++|+|||+| |+|+++|++||+++++++++++++ ++|.+.. |.. .++. .+.++|
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~G~~~l~~Ai~~~~~v~v~~~~~------~~i~s~~--~~~-~~~~-------~~~~~~- 65 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS------YRIYSDM--FDF-AVDL-------RPNPDY- 65 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSS------CEEEETT--SSS-CBCS-------SCCTTT-
T ss_pred eEEEeeCceEEEeccceEecCCCEEEEEEccccEEEEEEeCCc------EEEecCC--CCc-eeee-------cCCCCc-
Confidence 578999999999999995 559999999999999999988754 5676643 211 1111 123467
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCC---CCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 127 HYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 127 ~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g---~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
+|+.++++.+.+++.+.+.. ..|+++.++|+||.+ +|||||||+++|++.|+++++++++++++++++|+.+|.
T Consensus 66 ~~v~~~i~~~~~~~~~~g~~---~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~ 142 (337)
T 2pg9_A 66 SLIQETIALMGDFLAVRGQN---LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL 142 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCC---CCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 89988888877777766654 379999999999999 999999999999999999999999999999999999998
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecC---------------------CCeeEEeecCCCcEEEEEeCCCccccccccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFN---------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAA 262 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~---------------------~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~ 262 (499)
++|+++|++|++++++||. +.+..++ +..++++++|.++.++|++|++++++...
T Consensus 143 ~~~~~~~~~D~~~~~~Gg~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~T~~~-- 218 (337)
T 2pg9_A 143 KRGDNGSMGDLACIAAEDL--VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSHM-- 218 (337)
T ss_dssp HTTCCSCSHHHHHHHHTSC--EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHHH--
T ss_pred HhCCCCCHHHHHHHHhCCE--EEEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccchHHH--
Confidence 8999999999999999996 3332222 23567788888999999999987543210
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhh
Q 010850 263 SNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKL 342 (499)
Q Consensus 263 ~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~ 342 (499)
. +.+++. +..+ .
T Consensus 219 -------------~-----------------------------------------~~~~~~-----~~~~-~-------- 230 (337)
T 2pg9_A 219 -------------V-----------------------------------------QQIKQN-----INQN-F-------- 230 (337)
T ss_dssp -------------H-----------------------------------------HHHGGG-----CCHH-H--------
T ss_pred -------------H-----------------------------------------HHHHHH-----HHHH-H--------
Confidence 0 000000 0000 0
Q ss_pred hhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhc-CCCCHHHH
Q 010850 343 TSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELE 421 (499)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-~vs~peld 421 (499)
..+ ...++.+++++|.++ |++.||++|+++|++++++. ++++|++|
T Consensus 231 ----------------------~~~------~~~~~~~~~~aL~~~-----d~~~lg~~m~~~~~~l~~l~~~v~~p~l~ 277 (337)
T 2pg9_A 231 ----------------------LTS------SKETVVSLVEALEQG-----KSEKIIEQVEVASKLLEGLSTDIYTPLLR 277 (337)
T ss_dssp ----------------------HHH------HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCTTTCCHHHH
T ss_pred ----------------------HHH------HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCcCCCHHHH
Confidence 001 123566788899876 69999999999999999874 39999999
Q ss_pred HHHHHHHhCCCceeEecCcCCcceEEEEEeCC-chHHHHHHHHH
Q 010850 422 ELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 464 (499)
Q Consensus 422 ~lv~~a~~~Ga~GaklsGaG~GG~viaL~~~~-~~~~~~~~l~~ 464 (499)
.|++.+++.|++ +||||||||||+++|++++ .++++.++|++
T Consensus 278 ~l~~~a~~~Ga~-ak~sGaGgGg~vial~~~~~~~~~~~~~l~~ 320 (337)
T 2pg9_A 278 QLKEASQDLQAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 320 (337)
T ss_dssp HHHHTTTTSSEE-EEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCE-EEEeCCCCccEEEEEECCHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999763 45566555543
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=2.2e-39 Score=328.34 Aligned_cols=299 Identities=26% Similarity=0.291 Sum_probs=218.2
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
+++++|||||+|+|||+||+|+++|++|||+++++++++. + . ++|.+.+. ...++. ..++|
T Consensus 21 mi~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~-~----~-i~i~~~~~---~~~~~~--------~~~~~-- 81 (321)
T 4hac_A 21 MVSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELN-D----S-ITIQSQIG---RTGLDF--------EKHPY-- 81 (321)
T ss_dssp CEEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEEC-S----S-EEEEETTE---EESSCT--------TTSHH--
T ss_pred EEEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEEC-C----C-EEEEECCC---Cccccc--------chhHH--
Confidence 4789999999999999999999999999999999999874 3 3 77765321 011111 11233
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT 207 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~ 207 (499)
+ +.+...++..+. ..|+++.+.++||+++|||||||+++|++.|++++++.++++++++++|.++|+..++
T Consensus 82 -~----~~~~~~l~~~~~----~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 152 (321)
T 4hac_A 82 -V----SAVIEKMRKSIP----INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQG 152 (321)
T ss_dssp -H----HHHHHHHTTTSC----CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHS
T ss_pred -H----HHHHHHHHHhCC----CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Confidence 3 233344544442 3799999999999999999999999999999999999999999999999999984434
Q ss_pred CCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCc
Q 010850 208 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKP 287 (499)
Q Consensus 208 ~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~ 287 (499)
.+|++|++++++||. +++ .+. +++++| ++.++|++|+++.++.. +....
T Consensus 153 ~~~~~D~~~~~~Gg~---~~~-~~~---~~l~~p-~~~~vlv~p~~~~sT~~------------~~~~~----------- 201 (321)
T 4hac_A 153 AASPTDTYVSTFGGV---VTI-PER---RKLKTP-DCGIVIGDTGVFSSTKE------------LVANV----------- 201 (321)
T ss_dssp CCCSHHHHHHHHCSE---EEE-TTC---CEECCC-CCEEEEEECCCCCCHHH------------HHHHH-----------
T ss_pred CCcHHHHHHHHcCCe---EEE-cCC---ceeccC-CCEEEEEECCCCccHHH------------HHHHH-----------
Confidence 488999999999984 333 221 233456 89999999998755321 10000
Q ss_pred hhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhh
Q 010850 288 QEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQR 367 (499)
Q Consensus 288 ~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (499)
+......+ +.+.. ...+
T Consensus 202 ---------------------------------~~l~~~~~---~~~~~---------------------------~~~~ 218 (321)
T 4hac_A 202 ---------------------------------RQLRESYP---DLIEP---------------------------LMTS 218 (321)
T ss_dssp ---------------------------------HHHHHHCH---HHHHH---------------------------HHHH
T ss_pred ---------------------------------HHHHhcCH---HHHHH---------------------------HHHH
Confidence 00000000 00000 0011
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcceEE
Q 010850 368 AAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 447 (499)
Q Consensus 368 ~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~vi 447 (499)
+. ..+.++.++|.++ |++.||++|+++|..++ .+++++|+++++++.+++.|++|+||||+|+|||++
T Consensus 219 ~~------~~~~~~~~al~~~-----d~~~lg~~~~~~~~~~~-~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~ 286 (321)
T 4hac_A 219 IG------KISRIGEQLVLSG-----DYASIGRLMNVNQGLLD-ALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMV 286 (321)
T ss_dssp HH------HHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEE
T ss_pred HH------HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEE
Confidence 11 1234567888875 79999999999887655 468999999999999999999999999999999999
Q ss_pred EEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 010850 448 ALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 496 (499)
Q Consensus 448 aL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 496 (499)
+|++++.++++.++|++. + ..++.+++.. |++|
T Consensus 287 al~~~~~a~~~~~~l~~~----g------------~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 287 ALTAPEKCNQVAEAVAGA----G------------GKVTITKPTEQGLKV 320 (321)
T ss_dssp EEECSTTHHHHHHHHHHT----T------------CEEEEECBCSCSSEE
T ss_pred EEcCHHHHHHHHHHHHhC----C------------CeEEEEEECCCceec
Confidence 999767788888877642 1 2588888875 9886
No 12
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=9.9e-38 Score=317.32 Aligned_cols=319 Identities=24% Similarity=0.329 Sum_probs=227.0
Q ss_pred CCCCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECC-CcCCcceEEEEeCCCCCCceeecCCCCccccccc
Q 010850 44 AQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHD-SKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH 122 (499)
Q Consensus 44 ~~~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~-~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (499)
..++.++++|||||+|+|||+|++|+++|++||++++++++++.+ + ..+.+.+.... ++. ..
T Consensus 9 ~~~~~~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~----~~~~~~~~~~~-------~~~--~~---- 71 (332)
T 2hfs_A 9 KSKTTGKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGV----PGLQVDDQRPA-------IPG--YI---- 71 (332)
T ss_dssp CSBCCSCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTC----CSEEEEECCCC-------CTT--HH----
T ss_pred cCCCeEEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCC----CCeEEEecCcc-------ccc--cc----
Confidence 346678899999999999999999999999999999999998874 3 34555432111 110 00
Q ss_pred CCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 010850 123 HQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202 (499)
Q Consensus 123 ~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E 202 (499)
....|.+. +.+...++..+... ...|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|+++|
T Consensus 72 ~~~~~~~~---~a~~~~~~~~g~~~-~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E 147 (332)
T 2hfs_A 72 AQKRDEQI---KAHQLVLDHLKVDL-SGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGE 147 (332)
T ss_dssp HHHHHHHH---HHHHHHHHHTTBCC-SSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHG
T ss_pred cccchhHH---HHHHHHHHHcCCcc-CCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 01123333 33333344445421 125899999999999999999999999999999999999999999999999999
Q ss_pred hh-hCCCCCchhhhhhhhhcCCceEEeecCC--CeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHH
Q 010850 203 QF-IGTQSGGMDQAISIMAKSGFAELIDFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 279 (499)
Q Consensus 203 ~~-~g~~~g~~D~~~~~~Gg~~~~~~i~~~~--~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l 279 (499)
+. .|.++| .|++++++||. ++..... ..++++++|+++.++|++|+.+.++.. ++
T Consensus 148 ~~~~G~~~G-~D~~~~~~Gg~---~~~~~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~------------------~~ 205 (332)
T 2hfs_A 148 GGYHGTPSG-ADNTAATYGGL---ILYRRQNGKSVFKPIAFQQRLYLVVVGTGINASTAK------------------VV 205 (332)
T ss_dssp GGSSSCCCS-HHHHHHHHCEE---EEEEECSSSEEEEEECCCSCEEEEEEECSCCCCHHH------------------HH
T ss_pred HHhcCCCCc-HhHHHHhcCCe---EEEecCCCCcceeeecCCCCcEEEEEECCCCccHHH------------------HH
Confidence 84 566665 59999999984 3333222 257788887889999999998754321 01
Q ss_pred HHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhh
Q 010850 280 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 359 (499)
Q Consensus 280 ~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (499)
+. ++...... .+.+.
T Consensus 206 ~~--------------------------------------~~~~~~~~---~~~~~------------------------ 220 (332)
T 2hfs_A 206 ND--------------------------------------VHKMKQQQ---PVQFK------------------------ 220 (332)
T ss_dssp HH--------------------------------------HHHHHHHC---HHHHH------------------------
T ss_pred HH--------------------------------------HHHHHHhC---HHHHH------------------------
Confidence 00 00000000 00000
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecC
Q 010850 360 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 439 (499)
Q Consensus 360 ~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsG 439 (499)
.+++++.+ ++.++.++|.++ |++.|+++|+++|..++.. ++++|+++.+++.+++.|++|+||||
T Consensus 221 ---~~~~~~~~------~~~~~~~al~~~-----d~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sG 285 (332)
T 2hfs_A 221 ---RLYDNYTH------IVSQAREALQKG-----DLQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSG 285 (332)
T ss_dssp ---HHHHHHHH------HHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEES
T ss_pred ---HHHHHHHH------HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEecc
Confidence 01222222 345567888875 6999999999999999874 89999999999999999999999999
Q ss_pred cCCcceEEEEEeCC-chHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 010850 440 AGWGGCVVALVKES-IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 496 (499)
Q Consensus 440 aG~GG~viaL~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 496 (499)
+|+|||+++|++++ .++++.+++++.|...++ ...+.+.|++||++
T Consensus 286 aG~gg~v~~l~~~~~~a~~~~~~l~~~~~~~~~-----------~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 286 TGRGGIAVALAASSDQRDAIVKGLKAKCPEAKF-----------IWRYTVQPSAASNL 332 (332)
T ss_dssp SCSSSEEEEEESSHHHHHHHHHHHHHHCTTCCE-----------EEEEEECCSCC---
T ss_pred CCCCcEEEEEecCcccHHHHHHHHHHHHhcCCc-----------eEEEEeccCCCCCC
Confidence 99999999999765 467888898876644221 13467888999874
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=5.6e-38 Score=315.84 Aligned_cols=287 Identities=22% Similarity=0.296 Sum_probs=213.2
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccc-eEEEEEECCCcCCcce-EEEEeCCCCCCceeecCCCCcccccccCCcc
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQD-TIVAIRKHDSKEAEKV-LKIANVSDKYNMCTYPAEPDQEIDMKHHQWG 126 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~-~~v~~~~~~~~~~~~~-i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (499)
++++|||||+|+|||+||+|+++|+++|+++ ++++++++++ .. +++.+.. +. .+++ ....|.
T Consensus 7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~----~~~i~~~~~~--~~---~~~~-------~~~~~~ 70 (308)
T 2x7i_A 7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALES----GNYSSIKSDV--YD---GMLY-------DAPDHL 70 (308)
T ss_dssp EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCT----TCCCEEEEEE--CS---SCCC-------CTTSCH
T ss_pred eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCC----CCeeEEEecC--CC---CChh-------hhhHHH
Confidence 6799999999999999999999999999985 8899998776 44 6665421 10 0111 113577
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hh
Q 010850 127 HYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FI 205 (499)
Q Consensus 127 ~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~-~~ 205 (499)
|++. .++..+.+. ..|++|.++++||.++|||||||+++|++.|++++++.++++++++++|.++|+ +.
T Consensus 71 ~~v~----~~~~~~~~~------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~ 140 (308)
T 2x7i_A 71 KSLV----NRFVELNNI------TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAH 140 (308)
T ss_dssp HHHH----HHHHHHTTC------CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHhh------CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHC
Confidence 8775 333444321 159999999999999999999999999999999999999999999999999998 45
Q ss_pred CCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCC
Q 010850 206 GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 285 (499)
Q Consensus 206 g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~ 285 (499)
|.++ +.|+.++.+||. ++++ ....++++++|.++.++|++++.+.+|... |
T Consensus 141 g~~s-G~d~~~~~~g~~---~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~~----~-------------------- 191 (308)
T 2x7i_A 141 GKPS-GIDTQTIVSGKP---VWFQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQA----V-------------------- 191 (308)
T ss_dssp SSCC-HHHHHHHHHTSC---EEEE-TTEEEECSCCCBSSEEEEEECCC--CCSCC----C--------------------
T ss_pred CCCc-hHHHHHhhCCce---EEEE-cCCCceEeccCCCceEEEEECcCCCCHHHH----H--------------------
Confidence 6655 469999999884 3444 334566666666899999999876543211 0
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhh
Q 010850 286 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 365 (499)
Q Consensus 286 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (499)
+.+++.....+ . .+
T Consensus 192 --------------------------------~~l~~~~~~~~----~------------------------------~~ 205 (308)
T 2x7i_A 192 --------------------------------HDVHKLCEDPQ----Y------------------------------MS 205 (308)
T ss_dssp --------------------------------C--------CC----H------------------------------HH
T ss_pred --------------------------------HHHHHHHhcCc----h------------------------------HH
Confidence 00000000000 0 01
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcce
Q 010850 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 445 (499)
Q Consensus 366 ~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~ 445 (499)
+ ..++ ..++.++.++|.++ |++.||++|+++|..+++. ++++|+++.+++.+++.|++|+||||+|+|||
T Consensus 206 ~-~~~~---~~~~~~~~~al~~~-----d~~~l~~~~~~~~~~~~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~ 275 (308)
T 2x7i_A 206 H-VKHI---GKLVLRASDVIEHH-----KFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGS 275 (308)
T ss_dssp H-HHHH---HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSS
T ss_pred H-HHHH---HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcE
Confidence 1 1111 13556678888875 6999999999999999994 89999999999999999999999999999999
Q ss_pred EEEEEeC-CchHHHHHHHHHHH
Q 010850 446 VVALVKE-SIDSQFILNLKEQF 466 (499)
Q Consensus 446 viaL~~~-~~~~~~~~~l~~~~ 466 (499)
+++|+++ +.++++.++|++.|
T Consensus 276 v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 276 MLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp EEEEESSHHHHHHHHHHHHHTT
T ss_pred EEEEeCChhHHHHHHHHHHhCC
Confidence 9999987 56778888886644
No 14
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=1.1e-36 Score=307.60 Aligned_cols=296 Identities=20% Similarity=0.306 Sum_probs=210.2
Q ss_pred CCCeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCc
Q 010850 46 PPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQW 125 (499)
Q Consensus 46 ~~~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (499)
.+.++++|||||+|+|||+|++|+++|++||++++++++++.++ ..+++.+.+.. ...+|+++.. .+....+|
T Consensus 3 ~~~~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~----~~i~i~~~~~~-~~~~~~~~~~--~~~~~~~~ 75 (317)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQE----DEIILNLNDLN-KSLGLNLNEI--KNINPNNF 75 (317)
T ss_dssp TCCEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCS----SEEEEEETTTT-EEEEEETTTG--GGCCGGGS
T ss_pred CCCEEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCC----CeEEEEeCCCC-CceEEEeccC--CccCcccc
Confidence 45688999999999999999999999999999999999998776 56777654311 0112332210 11123455
Q ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhh
Q 010850 126 GHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI 205 (499)
Q Consensus 126 ~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~ 205 (499)
+++..++..+...+...+.. ...|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+..
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~--~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~ 152 (317)
T 1kkh_A 76 -GDFKYCLCAIKNTLDYLNIE--PKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEI 152 (317)
T ss_dssp -GGGHHHHHHHHHHHHHTTCC--CCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhhccc--CCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 55533222222211112321 136999999999999999999999999999999999999999999999999999866
Q ss_pred CCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecC--C----CcEEEEEeCCCcccccccccccchhHHHHHHHHHHHH
Q 010850 206 GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 279 (499)
Q Consensus 206 g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p--~----~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l 279 (499)
++.+|++|++++++||. + ++ ++...+++++| . ++.+++++|+.+.++... +
T Consensus 153 ~g~~sg~D~~~~~~Gg~--~-~~--~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~------------------~ 209 (317)
T 1kkh_A 153 QGKASITDTSTITYKGI--L-EI--KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAEL------------------V 209 (317)
T ss_dssp SSSCCSHHHHHHHHCSE--E-EE--SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHH------------------H
T ss_pred cCCCchHHHHHHHhCCe--E-EE--cCCCceEecCCcccccccCcEEEEEECCCcCcHHHH------------------H
Confidence 55567899999999984 3 33 34455666542 1 368999999986543210 0
Q ss_pred HHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhh
Q 010850 280 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 359 (499)
Q Consensus 280 ~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (499)
+ .+ +.. ....+
T Consensus 210 ~--------------------------------------~~----~~~-~~~~~-------------------------- 220 (317)
T 1kkh_A 210 N--------------------------------------EV----AKI-ENKDE-------------------------- 220 (317)
T ss_dssp H--------------------------------------HH----HTC-TTHHH--------------------------
T ss_pred H--------------------------------------HH----HHh-hccHH--------------------------
Confidence 0 00 000 00000
Q ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecC
Q 010850 360 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 439 (499)
Q Consensus 360 ~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsG 439 (499)
...+. .+ .+.+++..+ |++.|+++|+++|..+++ +++++|+++++++.+++.| +|+||||
T Consensus 221 ----~~~~~-------~~--~~~~a~~~~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sG 280 (317)
T 1kkh_A 221 ----IFKEI-------DK--VIDEALKIK-----NKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTG 280 (317)
T ss_dssp ----HHHHH-------HH--HHHHHHHCC-----SHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECS
T ss_pred ----HHHHH-------HH--HHHHHHHcC-----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEee
Confidence 00011 11 123455554 699999999999998887 4899999999999999999 9999999
Q ss_pred cCCcceEEEEEeCCchHHHHHHHH
Q 010850 440 AGWGGCVVALVKESIDSQFILNLK 463 (499)
Q Consensus 440 aG~GG~viaL~~~~~~~~~~~~l~ 463 (499)
+|+|||+++|++++.++++.++|+
T Consensus 281 aG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 281 AGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred cCCCCEEEEEechhhHHHHHHHHH
Confidence 999999999998766777777665
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=6.2e-35 Score=291.04 Aligned_cols=277 Identities=18% Similarity=0.271 Sum_probs=199.5
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeec-ccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCcc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAI-RQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWG 126 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AI-d~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~ 126 (499)
.++++|||||+|+|||+|++|+++|++|| ++++++++++.++ .+++.+. ...
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~~-----~~~i~~~----------------------~~~ 57 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAES-----PWRLYEE----------------------DTL 57 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECSS-----CCCCCCC----------------------SHH
T ss_pred cEEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECCC-----ceEEEec----------------------Ccc
Confidence 47899999999999999999999999999 9999999987532 2222110 001
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh-hh
Q 010850 127 HYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FI 205 (499)
Q Consensus 127 ~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~-~~ 205 (499)
|.+.. +...+. ++. ..|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ..
T Consensus 58 ~~~~~----~~~~~~--~~~---~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~ 128 (292)
T 2oi2_A 58 SMAVY----ASLEYL--NIT---EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAH 128 (292)
T ss_dssp HHHHH----HHHHHH--TCS---CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTT
T ss_pred chhhh----hhHHHh--ccc---CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 22221 112222 432 368999999999999999999999999999999999999999999999999997 55
Q ss_pred CCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCC
Q 010850 206 GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 285 (499)
Q Consensus 206 g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~ 285 (499)
+.++| +|++++.+||. +++ .+....++++++....++|++++.+.+|... .+.+
T Consensus 129 ~~p~g-~d~~~~~~gg~---~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~~---------------~~~l------ 182 (292)
T 2oi2_A 129 MNPSG-LDAKTCLSDQP---IRF-IKNVGFTELEMDLSAYLVIADTGVYGHTREA---------------IQVV------ 182 (292)
T ss_dssp CCCCS-HHHHHHTCSSC---EEE-ETTTEEEECCCCCSCEEEEEECSSCCCHHHH---------------HHHH------
T ss_pred CCCCc-hhHHHHhcCce---EEE-EcCCCceeecCCCCCEEEEEECCCCCcHHHH---------------HHHH------
Confidence 77666 59999999985 333 2334456665543333889999876443210 0000
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhh
Q 010850 286 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 365 (499)
Q Consensus 286 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (499)
++.... .
T Consensus 183 -----------------------------------~~~~~~--------------------------------------~ 189 (292)
T 2oi2_A 183 -----------------------------------QNKGKD--------------------------------------A 189 (292)
T ss_dssp -----------------------------------HHTGGG--------------------------------------G
T ss_pred -----------------------------------HHHHhh--------------------------------------h
Confidence 000000 0
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcce
Q 010850 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 445 (499)
Q Consensus 366 ~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~ 445 (499)
++..+.+. ..+.++.++|.++ |++.|+++|+++|+.++.. ++++|+++++++.+++.|++|+||||+|+|||
T Consensus 190 ~~~~~~~~--~~~~~~~~al~~~-----d~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~ 261 (292)
T 2oi2_A 190 LPFLHALG--ELTQQAEIAISQK-----DAEGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGC 261 (292)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSE
T ss_pred HHHHHHHH--HHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHhCCCceeeeccCCCCcE
Confidence 11111111 1244567888875 6999999999999999984 89999999999999999999999999999999
Q ss_pred EEEEEeC-CchHHHHHHHHHHHH
Q 010850 446 VVALVKE-SIDSQFILNLKEQFY 467 (499)
Q Consensus 446 viaL~~~-~~~~~~~~~l~~~~~ 467 (499)
+++|+++ +.++++.++|++.+.
T Consensus 262 v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 262 IIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTC
T ss_pred EEEEecCchHHHHHHHHHHhcCc
Confidence 9999986 567788888876553
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=100.00 E-value=9e-32 Score=268.93 Aligned_cols=291 Identities=15% Similarity=0.207 Sum_probs=210.7
Q ss_pred eEEEccceeeeeccccccCCCeeeEeecccc-eEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQD-TIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~~~l~~AId~~-~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
++++||||++++|+ |++++++++|.| +++.+.+.++ ..+++..... . + +.+.|.|
T Consensus 3 i~v~aPaki~nlG~-----g~~vl~~a~d~~~~~~~~~~~~~----~~~~i~~~~~-----~--------~--~~~~~~n 58 (296)
T 1h72_C 3 VRVKAPCTSANLGV-----GFDVFGLCLKEPYDVIEVEAIDD----KEIIIEVDDK-----N--------I--PTDPDKN 58 (296)
T ss_dssp EEEEEEEEEECTGG-----GTTTEEEEEEEEEEEEEEEEESS----SSEEEEESCT-----T--------S--CCCTTTS
T ss_pred EEEEEEeehhcccc-----chhhhHHhcccccEEEEEEecCC----CeEEEEEcCC-----c--------C--CCCCccC
Confidence 67999999999996 456999999995 4456665544 4466643110 0 0 1123778
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT 207 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~ 207 (499)
++..+++.+ ++..+. ..|++|.++++||.++|||||||+++|++.|+++++++++++++++++|.++|...++
T Consensus 59 ~v~~a~~~~---~~~~g~----~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 131 (296)
T 1h72_C 59 VAGIVAKKM---IDDFNI----GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSG 131 (296)
T ss_dssp HHHHHHHHH---HHHTTC----CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHH---HHHhCC----CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccC
Confidence 886444433 223354 2699999999999999999999999999999999999999999999999999985444
Q ss_pred CCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCc
Q 010850 208 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKP 287 (499)
Q Consensus 208 ~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~ 287 (499)
.+++.|..++++||. +++.+..+..++++++|+++.++|++|+++.+|..
T Consensus 132 ~~~~ddv~~~~~gg~--~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~~T~~---------------------------- 181 (296)
T 1h72_C 132 AKHADNVAPAIFGGF--TMVTNYEPLEVLHIPIDFKLDILIAIPNISINTKE---------------------------- 181 (296)
T ss_dssp SCCCTTHHHHHHCSE--EEEEETTTTEEEEECCCSCCCEEEECCSSCCCHHH----------------------------
T ss_pred CCCccchHHHHhCCE--EEEEeCCceEEEEEcCCCCeEEEEEeCCCCccHHH----------------------------
Confidence 444556666899985 44444455567888888789999999987533210
Q ss_pred hhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhh
Q 010850 288 QEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQR 367 (499)
Q Consensus 288 ~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 367 (499)
. .+.+++. . +
T Consensus 182 --~------------------------------~~~l~~~-~-------------------------------------~ 191 (296)
T 1h72_C 182 --A------------------------------REILPKA-V-------------------------------------G 191 (296)
T ss_dssp --H------------------------------HHTSCSC-C-------------------------------------C
T ss_pred --H------------------------------HHhccCc-C-------------------------------------c
Confidence 0 0000100 0 0
Q ss_pred HhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH--HHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCcce
Q 010850 368 AAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 445 (499)
Q Consensus 368 ~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm--~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~GG~ 445 (499)
..+.+.+..|+.++.++|.++ |++.||++| +..|+.++. +++|+++.+++.+++. ++|+||||+| +|
T Consensus 192 ~~~~~~~~~~~~~~~~al~~~-----d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGsG--~~ 260 (296)
T 1h72_C 192 LKDLVNNVGKACGMVYALYNK-----DKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGSG--PS 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTTS--SC
T ss_pred HHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecCC--hh
Confidence 123334445666788899876 699999999 667788874 6799999999999998 8999999998 49
Q ss_pred EEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 010850 446 VVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 497 (499)
Q Consensus 446 viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 497 (499)
+++|++++.++++.++|++.|.. +.+++|+.|++++
T Consensus 261 v~~l~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 261 IIAFPKEEFIDEVENILRDYYEN----------------TIRTEVGKGVEVV 296 (296)
T ss_dssp EEEEECGGGHHHHHHHHHHHCSC----------------EEEECBCCCCEEC
T ss_pred eEEEecHHHHHHHHHHHHHhccC----------------ceeccCCCCeEeC
Confidence 99999666788888888765421 1277887799874
No 17
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.96 E-value=2.1e-26 Score=231.30 Aligned_cols=290 Identities=16% Similarity=0.178 Sum_probs=200.9
Q ss_pred CeEEEccceeee----eccccccCC-CeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCccccccc
Q 010850 48 DVYARCPGRVNL----IGEHIDYEG-YSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH 122 (499)
Q Consensus 48 ~~~~~APgrv~L----~GEH~d~~G-~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~ 122 (499)
.+.++||+|||| .|.+.|-|+ -..+.++|+++.++.+++.++ ..+.+.... ...+ +
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~----~~i~~~g~~----~~~~--p--------- 65 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADV----LSLELVGEG----ADQL--P--------- 65 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSS----CEEEEESTT----GGGS--C---------
T ss_pred cEEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCC----CEEEEeCCC----ccCC--C---------
Confidence 478999999999 888888554 456789999999999988765 556664321 0111 1
Q ss_pred CCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Q 010850 123 HQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202 (499)
Q Consensus 123 ~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E 202 (499)
.+..|++..+++.+ +...+. ..|++|.+.++||.++|||||||.++|++.|+++++++++++++++++|.++|
T Consensus 66 ~~~~Nlv~~A~~~l---~~~~g~----~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~ 138 (306)
T 3pyf_A 66 TDERNLAWQAAELM---AEHVGR----APDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG 138 (306)
T ss_dssp CSTTSHHHHHHHHH---HHHTTC----CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHH---HHHhCC----CCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 11237776444333 333454 26999999999999999999999999999999999999999999999999986
Q ss_pred hhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHH
Q 010850 203 QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 282 (499)
Q Consensus 203 ~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 282 (499)
.|...+++||. .+.......+.+++.|+++.++|++|++..+|... | +.+.
T Consensus 139 ---------~Dv~~~~~Gg~---~~~~g~ge~~~~l~~~~~~~~vl~~P~~~vsT~~a----~-----------~~l~-- 189 (306)
T 3pyf_A 139 ---------SDVPFALHGGT---ALGTGRGEELATVLSRNTFHWVLAFADSGLLTSAV----Y-----------NELD-- 189 (306)
T ss_dssp ---------TTHHHHHHBSE---EEECSSSSCCEEECCSSCEEEEEEECSSCCCHHHH----H-----------HHHH--
T ss_pred ---------CCCceeecCce---EEEEeeCCeEEEccCCCCcEEEEEECCCCCcHHHH----H-----------Hhhh--
Confidence 39999999984 34444445667888878899999999876442210 0 0000
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhh
Q 010850 283 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 362 (499)
Q Consensus 283 ~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (499)
...... ++
T Consensus 190 ---------------------------------------~~~~~~----------------~~----------------- 197 (306)
T 3pyf_A 190 ---------------------------------------RLREVG----------------DP----------------- 197 (306)
T ss_dssp ---------------------------------------HHHHHS----------------CC-----------------
T ss_pred ---------------------------------------hhcccc----------------cc-----------------
Confidence 000000 00
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCC
Q 010850 363 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGW 442 (499)
Q Consensus 363 ~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~ 442 (499)
. ...++..+..+|.++ |++.|+++|.+..+..+.. .+|+++++++.+++.|++|++|||+|
T Consensus 198 ------~----~~~~~~~~~~al~~~-----d~~~l~~~l~n~le~~~~~---~~P~l~~i~~~~~~~Ga~ga~mSGsG- 258 (306)
T 3pyf_A 198 ------P----RLGEPGPVLAALAAG-----DPDQLAPLLGNEMQAAAVS---LDPALARALRAGVEAGALAGIVSGSG- 258 (306)
T ss_dssp ------C----CCCCHHHHHHHHHHT-----CHHHHGGGCEETTHHHHHH---HCTHHHHHHHHHHHTTCSEEEECTTS-
T ss_pred ------c----cccCHHHHHHHHHhC-----CHHHHHHHhccchHHHHHH---hChHHHHHHHHHHhcCCCEEEEcCcc-
Confidence 0 001233456777765 6999999884323333322 38999999999999999999999888
Q ss_pred cceEEEEEeCC-chHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 010850 443 GGCVVALVKES-IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 498 (499)
Q Consensus 443 GG~viaL~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 498 (499)
+|+++|++++ .++++.++|++ .+ +...++++.+.+ ||+|..
T Consensus 259 -ptvfal~~~~~~a~~~~~~l~~----~g----------~~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 259 -PTCAFLCTSASSAIDVGAQLSG----AG----------VCRTVRVATGPVPGARVVS 301 (306)
T ss_dssp -SEEEEEESSHHHHHHHHHHHHH----TT----------SSSEEEEEEECCBCSEEC-
T ss_pred -hhheEEeCCHHHHHHHHHHHHh----cC----------CcceEEEeecCCCCCEEec
Confidence 8999999763 45566555543 22 234677766655 999863
No 18
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.95 E-value=1.2e-26 Score=232.38 Aligned_cols=284 Identities=17% Similarity=0.215 Sum_probs=193.7
Q ss_pred CeEEEccceeeeeccccccCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccCCccc
Q 010850 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGH 127 (499)
Q Consensus 48 ~~~~~APgrv~L~GEH~d~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (499)
++.+++|++...+| .|+++|.+|||++.++++++..+ .+.+..... ..++. .+ .|
T Consensus 2 m~~v~vPat~anlG-----~Gfd~lg~al~l~d~v~~~~~~~-----~~~i~~~~~----~~~p~--------~~---~n 56 (298)
T 3hul_A 2 SLRIRVPATTANLG-----PGFDSCGLALTLYLTLDIGAEAD-----SWYIEHNIG----GGIPH--------DE---TN 56 (298)
T ss_dssp CEEEEEEEEEESCT-----TCTTTEEEEEEEEEEEEEEEECS-----SCEEECCCC----TTCCS--------ST---TS
T ss_pred eEEEEEeeceeccC-----CCcchhhhhcccceEEEEEEcCC-----ceEEEecCc----ccCCC--------CC---Cc
Confidence 47899999999999 89999999999999999975333 355543210 01111 11 24
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC
Q 010850 128 YFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT 207 (499)
Q Consensus 128 ~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~ 207 (499)
.+. +.+. .+.+ . ..|++|.+.++||.++|||||||+++|++.|+++++++++++++++++|.++|
T Consensus 57 lv~---~a~~-~~~~--~----~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e----- 121 (298)
T 3hul_A 57 VII---ETAL-NLAP--N----LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE----- 121 (298)
T ss_dssp HHH---HHHH-HHCT--T----CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-----
T ss_pred HHH---HHHH-HHhc--c----CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc-----
Confidence 443 2222 2222 1 36999999999999999999999999999999999999999999999999998
Q ss_pred CCCchhhhhhhhhcCCceEEeecCC--CeeEEeecCCCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCC
Q 010850 208 QSGGMDQAISIMAKSGFAELIDFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 285 (499)
Q Consensus 208 ~~g~~D~~~~~~Gg~~~~~~i~~~~--~~~~~i~~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~ 285 (499)
++..|...+++||. .+..... ..+.++++| ++.+++++|+...+|..
T Consensus 122 -g~~ddv~~~~~GG~---~~~~g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT~~-------------------------- 170 (298)
T 3hul_A 122 -GHPDNVAPAVLGNW---VVGAKLDGEDFYVRHLFP-DCALIAFIPKAELLTSE-------------------------- 170 (298)
T ss_dssp -SCSTTHHHHHHCSE---EEEEEETTEEEEEEECCC--CEEEEEECCCCCC-----------------------------
T ss_pred -CCcccCcccccCCE---EEEEeCCCcEEEEEcCCC-CeEEEEEECCCCCCcHH--------------------------
Confidence 22246667889995 3333322 334466666 59999999987533211
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhh
Q 010850 286 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 365 (499)
Q Consensus 286 ~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (499)
. ++.+++. ++.
T Consensus 171 ----a------------------------------~~~l~~~-~~~---------------------------------- 181 (298)
T 3hul_A 171 ----S------------------------------RGVLPDT-LPF---------------------------------- 181 (298)
T ss_dssp ---------------------------------------CCE-EEH----------------------------------
T ss_pred ----H------------------------------HHHHhhh-ccH----------------------------------
Confidence 0 0000000 000
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--HhHhhhhhcCCCCHHHHHHHHHHHhCCCceeEecCcCCc
Q 010850 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMND--SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWG 443 (499)
Q Consensus 366 ~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~--sh~~lr~~~~vs~peld~lv~~a~~~Ga~GaklsGaG~G 443 (499)
.. .+.+..++..++.+|.++ |++.|+++|+. .|+.++.. .+|+++++++.+++.|++|++|||+|
T Consensus 182 ~~---~~~~~~~~~~~~~al~~~-----d~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG-- 248 (298)
T 3hul_A 182 KE---AVQASSIANVMIAAILRN-----DMTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG-- 248 (298)
T ss_dssp HH---HHHHHHHHHHHHHHHTTT-----CHHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--
T ss_pred HH---HHHHHHHHHHHHHHHHcC-----CHHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--
Confidence 00 011223456678888876 69999999973 47877754 38999999999999999999999888
Q ss_pred ceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 010850 444 GCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 498 (499)
Q Consensus 444 G~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 498 (499)
+|+++|++++.++++.++|++ .+ .+..++++++++ |++|..
T Consensus 249 ptv~al~~~~~a~~v~~~l~~----~~----------~~~~~~~~~~~~~Ga~v~~ 290 (298)
T 3hul_A 249 PTVLVFAPRNLANKLQTSLQT----LE----------IDADVLLLDVEGSGAEVFR 290 (298)
T ss_dssp SCEEEEECGGGHHHHHHHHHT----TC----------CSSEEEEEEBCCCCCEEEE
T ss_pred hheEEEECHHHHHHHHHHHHh----cC----------CCcEEEEcccCCCceEEEe
Confidence 799999986667666666643 22 235788888876 999863
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.94 E-value=2.8e-25 Score=224.27 Aligned_cols=291 Identities=14% Similarity=0.103 Sum_probs=191.8
Q ss_pred CCeEEEccceeeeeccccccCCC------eeeEeec-ccceEEEEEE-CCCcCCcceEEEEeCCCCCCceeecCCCCccc
Q 010850 47 PDVYARCPGRVNLIGEHIDYEGY------SVLPMAI-RQDTIVAIRK-HDSKEAEKVLKIANVSDKYNMCTYPAEPDQEI 118 (499)
Q Consensus 47 ~~~~~~APgrv~L~GEH~d~~G~------~~l~~AI-d~~~~v~~~~-~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~ 118 (499)
....++||++|+|+|+|+++.++ +.+++++ ++++++.+++ ..+. ....+. ++. .
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~~~v~~~~~~~---~~~~~~------------~~g-~-- 68 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTTTSVSFLPDTA---TSDQFY------------ING-I-- 68 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEECCTTC---CSCEEE------------ETT-E--
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccceEEEEEEcCCC---CeEEEE------------ECC-C--
Confidence 45789999999999999988654 5778888 4777777765 2210 011121 110 0
Q ss_pred ccccCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 010850 119 DMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 198 (499)
Q Consensus 119 ~~~~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a 198 (499)
....+|.|++. .++..+++.+. .|++|.+.++||.++|||||||+++|++.|+++++++++++++++++|
T Consensus 69 -~~~~~~~n~v~----~~~~~~~~~~~-----~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la 138 (317)
T 2gs8_A 69 -LQNDEEHTKIS----AIIDQFRQPGQ-----AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKA 138 (317)
T ss_dssp -ECCHHHHHHHH----HHHTTTCCTTC-----CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred -ccccchHHHHH----HHHHHHHHhcC-----CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 01124767664 34344433221 589999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEE--eCCCcccccccccccchhHHHHHHHHH
Q 010850 199 CECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTA 276 (499)
Q Consensus 199 ~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~--~s~~~~~~~~~~~~~y~~r~~e~~~a~ 276 (499)
.+++- +...+++||. .....+.......++|.++.++++ +++... ...++.|+.
T Consensus 139 ~~~~G---------~~~~~~~GG~---~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~---~~tt~~~~~--------- 194 (317)
T 2gs8_A 139 KFASG---------SSSRSFFGPV---AAWDKDSGAIYKVETDLKMAMIMLVLNAAKKP---ISSREGMKL--------- 194 (317)
T ss_dssp HHHHG---------GGGGGGSCSE---EEECTTTCCEEECCCCCCEEEEEEECCCSSCC---SCHHHHHHH---------
T ss_pred Hhhcc---------hhHhhhcCCh---heEeeCCCceeEEEccccccEEEEEEECCCcC---cccHHHHHH---------
Confidence 88641 3456789984 333333333334455656775444 443321 011111110
Q ss_pred HHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhh
Q 010850 277 IVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVL 356 (499)
Q Consensus 277 ~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 356 (499)
.++..+ .
T Consensus 195 ----------------------------------------------~~~~~~-~-------------------------- 201 (317)
T 2gs8_A 195 ----------------------------------------------CRDTST-T-------------------------- 201 (317)
T ss_dssp ----------------------------------------------HHHHCT-T--------------------------
T ss_pred ----------------------------------------------HhhcCH-H--------------------------
Confidence 000000 0
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhcCCC-------CHHHHHHHHH---
Q 010850 357 NAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECS-------CPELEELVNV--- 426 (499)
Q Consensus 357 ~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs-------~peld~lv~~--- 426 (499)
..+++.+ -..++..++.+|.++ |++.||++|+++|..++..+..+ .|.+..+++.
T Consensus 202 -------~~~~~~~---~~~~~~~~~~al~~~-----d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~ 266 (317)
T 2gs8_A 202 -------FDQWVEQ---SAIDYQHMLTYLKTN-----NFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKE 266 (317)
T ss_dssp -------HHHHHHH---HHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHH
T ss_pred -------HHHHHHH---HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHH
Confidence 0111222 134677789999986 79999999999888887765333 4556666654
Q ss_pred HHhCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 010850 427 CRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 496 (499)
Q Consensus 427 a~~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 496 (499)
+++.|+.++.+||+| +|+++|++++.++++.+++++ . ..++++++++|++|
T Consensus 267 ~~~~G~~~~~~SGaG--ptv~~l~~~~~~~~v~~~l~~-----~------------~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 267 LRQEGFACYFTMDAG--PNVKVLCLEKDLAQLAERLGK-----N------------YRIIVSKTKDLPDV 317 (317)
T ss_dssp HHHTTCCEEEECCSS--SCEEEEEEGGGHHHHHHHHHT-----T------------SEEEEEEBCCCCCC
T ss_pred HHhcCCcEEEEecCC--CeEEEEEcHHHHHHHHHHHhc-----C------------CeEEEEecCCCCCC
Confidence 345899999999887 899999987777777777754 1 26999999999986
No 20
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.94 E-value=1.1e-25 Score=222.24 Aligned_cols=165 Identities=16% Similarity=0.244 Sum_probs=127.9
Q ss_pred CCeEEEccceeee----eccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccc
Q 010850 47 PDVYARCPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMK 121 (499)
Q Consensus 47 ~~~~~~APgrv~L----~GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (499)
+++.++|||||+| .|+|.| |++..+++++|++++++ +++ + ..+++.+ . .+
T Consensus 3 ~m~~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~----~~i~i~~-~------~~----------- 57 (271)
T 2v8p_A 3 HMIKVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--E----GVLRVET-N------IG----------- 57 (271)
T ss_dssp CCEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--E----SSCEEEE-S------SC-----------
T ss_pred ceEEEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--C----CeEEEEe-C------CC-----------
Confidence 4678999999999 799998 66678999999999999 987 3 3355543 1 00
Q ss_pred cCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 122 HHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 122 ~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
..+|.|++..+++.+. +..+. ..|++|.++++||.++|||||||.++|++.|++++++.++++++++++|.++
T Consensus 58 ~~~~~nlv~~a~~~~~---~~~g~----~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~ 130 (271)
T 2v8p_A 58 IPQEENLVYKGLREFE---RITGI----EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSI 130 (271)
T ss_dssp CCTTTCHHHHHHHHHH---HHHCC----CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHH---HHhCC----CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh
Confidence 1236688864444332 23354 2689999999999999999999999999999999999999999999999998
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCcc
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAES 255 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~ 255 (499)
| .|..++++||. .+.......++++++|.++.+++++|+.+.
T Consensus 131 e---------~dv~~~~~gg~---~~~~g~g~~~~~l~~~~~~~~vl~~p~~~~ 172 (271)
T 2v8p_A 131 S---------ADAPFFLLGKS---AIGRGKGEVLEPVETEISGKITLVIPQVSS 172 (271)
T ss_dssp C---------TTTGGGGTCSE---EEEETTTTEEEECCCCCCSEEEEEECSSCC
T ss_pred C---------CCHHHHhcCCe---EEEEEcCCEEEEccCCCCcEEEEEeCCCCC
Confidence 6 28888999984 333434445667775448999999998753
No 21
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.94 E-value=1.2e-24 Score=220.78 Aligned_cols=296 Identities=15% Similarity=0.111 Sum_probs=195.5
Q ss_pred eEEEccceeeeeccccccCCC------eeeEeeccc-ceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccc
Q 010850 49 VYARCPGRVNLIGEHIDYEGY------SVLPMAIRQ-DTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMK 121 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~G~------~~l~~AId~-~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~ 121 (499)
.+++||++|.|+|+|.++.++ +.|+++++. ++.++++..++. +...+.+ +.. . .
T Consensus 10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~~~~~~~~v~~~~~~-~~~~~~i--------------~g~-~---~ 70 (332)
T 3qt5_A 10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLDRFYTETKVTFDPDF-TEDCLIL--------------NGN-E---V 70 (332)
T ss_dssp EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEEEEEEEETTC-SSCEEEE--------------TTE-E---C
T ss_pred EEEEecCcEEEEeeeeeccCCccccCCCceEEEecCCCCeeEEEEcCCC-CccEEEE--------------CCc-c---C
Confidence 578999999999999998764 467777763 566655543320 0012222 110 0 1
Q ss_pred cCCccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 010850 122 HHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 201 (499)
Q Consensus 122 ~~~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~ 201 (499)
..+|.|++..++..+.+ ..+. ..|++|.+.++||.++|||||||.++|++.|+++++++++++++++++|.++
T Consensus 71 ~~~~~n~v~~~~~~~~~---~~~~----~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~ 143 (332)
T 3qt5_A 71 NAKEKEKIQNYMNIVRD---LAGN----RLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRG 143 (332)
T ss_dssp CHHHHHHHHHHHHHHHH---HHTC----CCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHH---hcCC----CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 12356777544433322 2344 2689999999999999999999999999999999999999999999999997
Q ss_pred hhhhCCCCCchhhhhhhhhcCCceEEeec-CC---CeeEEee---cCCCcEEEEEeCCCcccccccccccchhHHHHHHH
Q 010850 202 EQFIGTQSGGMDQAISIMAKSGFAELIDF-NP---IRTTDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRL 274 (499)
Q Consensus 202 E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~-~~---~~~~~i~---~p~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~ 274 (499)
| + |...+++||+ +.+.. .. ....+++ .++++.++++.+.....+..+ | .
T Consensus 144 ~--------g-~~~~~~~GG~---~~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~-----~ 199 (332)
T 3qt5_A 144 S--------G-SASRSIFGGF---AEWEKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------R-----S 199 (332)
T ss_dssp C--------G-GGGGGGSCSE---EEEECCSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------H-----H
T ss_pred c--------C-CchhhhcCCe---EEEecCCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------H-----H
Confidence 3 1 5667889994 33322 11 1235554 334788888888754221110 0 0
Q ss_pred HHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchh
Q 010850 275 TAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLD 354 (499)
Q Consensus 275 a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 354 (499)
.+ ++.++.. ..
T Consensus 200 ---~~-----------------------------------------~~~~~~s-~~------------------------ 210 (332)
T 3qt5_A 200 ---GM-----------------------------------------SLTRDTS-RF------------------------ 210 (332)
T ss_dssp ---HH-----------------------------------------HHHHHHC-TT------------------------
T ss_pred ---HH-----------------------------------------HHhhhcC-hh------------------------
Confidence 00 0000000 00
Q ss_pred hhhhhhhhhhhhhHhHHHHHH-HHHHHHHHHHhcCCcchHHHHHHHHHHHH----HhHhhhhhcC---CCCHHHHHHHHH
Q 010850 355 VLNAAKQYKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMND----SHHSCSVLYE---CSCPELEELVNV 426 (499)
Q Consensus 355 ~~~~~~~~~~~~r~~~~i~E~-~rv~~~~~al~~~~~~~~d~~~lg~lm~~----sh~~lr~~~~---vs~peld~lv~~ 426 (499)
++.+. ... .++..++.||.++ |++.|+++|.+ -|+.++..+. ..+|+++.+++.
T Consensus 211 ----------~~~~v---~~~~~~~~~l~~Al~~~-----D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~ 272 (332)
T 3qt5_A 211 ----------YQYWL---DHVDEDLNEAKEAVKNQ-----DFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAI 272 (332)
T ss_dssp ----------HHHHH---HHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHH
T ss_pred ----------HHHHH---HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHH
Confidence 00010 111 2667788999976 79999999973 5666665421 137999999998
Q ss_pred HH---hCCCceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe-eCCCceeec
Q 010850 427 CR---NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKF 497 (499)
Q Consensus 427 a~---~~Ga~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~ 497 (499)
++ +.|++|+.+||+| +|+++|+++++++++.++|++.|. ...++++ .|+.|++++
T Consensus 273 ~~~~~~~Ga~~a~~SGaG--Ptv~~l~~~~~a~~v~~~l~~~~~--------------~~~~~v~~~~g~G~~~~ 331 (332)
T 3qt5_A 273 VEQCRKANLPCYFTMDAG--PNVKVLVEKKNKQAVMEQFLKVFD--------------ESKIIASDIISSGVEII 331 (332)
T ss_dssp HHHHHHTTCCEEEECCSS--SCEEEEEEHHHHHHHHHHHHTTSC--------------GGGEEEEEBCSSCCEEC
T ss_pred HHHHHhCCCcEEEEeCCC--CcEEEEECHHHHHHHHHHHHHhCC--------------CceEEEeccccCCcEec
Confidence 85 7899999999777 999999987777788888865432 2357888 999999876
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.92 E-value=2.5e-24 Score=213.00 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=118.0
Q ss_pred eEEEccceeee----eccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L----~GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.+ |||||+| .|+|.| |+...++.++||+++++++++. . -.+.... . + +
T Consensus 2 i~~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~~-~----~~i~~~~--------~--~--------~-- 55 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEPV-S----SGLHFQG--------P--Y--------G-- 55 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEEE-S----SCEEEES--------T--T--------G--
T ss_pred cee-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEEC-c----EEEEEcC--------C--C--------C--
Confidence 456 9999999 589998 5567799999999999999862 3 2232211 0 1 0
Q ss_pred CccchHHHHHHHHHHHHHHcCCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q 010850 124 QWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 203 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~ 203 (499)
..|++..+++.+ ++..+. ..|++|.++++||.++|||||||.++|++.|++++++.++ +++++|.++|
T Consensus 56 -~~n~v~~a~~~~---~~~~g~----~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g- 123 (275)
T 1uek_A 56 -RENLAYRAASLY---LEAAGQ----PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG- 123 (275)
T ss_dssp -GGSHHHHHHHHH---HHHTTC----CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC-
T ss_pred -CccHHHHHHHHH---HHHhCC----CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC-
Confidence 126665333322 233343 3699999999999999999999999999999999999988 8899998875
Q ss_pred hhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 204 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 204 ~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
.|+.++++||. .+.......+++++ ++++.+++++|+.+.+
T Consensus 124 --------~dv~~~~~Gg~---~~~~g~g~~~~~l~-~~~~~~vl~~p~~~~s 164 (275)
T 1uek_A 124 --------ADVPFFLLGRG---AEARGVGERLKPLA-LPPVPAVVFFPGLRVP 164 (275)
T ss_dssp --------TTHHHHHHCSE---EEEETTTTEEEEEC-CCCEEEEEEECCCCCC
T ss_pred --------CChHHHhcCCe---EEEEccCceeEEcc-CCCcEEEEEeCCCCCc
Confidence 29999999984 34444445667777 5689999999987543
No 23
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.91 E-value=2.4e-24 Score=214.14 Aligned_cols=170 Identities=17% Similarity=0.219 Sum_probs=127.9
Q ss_pred eEEEccceeee----eccccc-cCCCeeeEeecccceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccccccC
Q 010850 49 VYARCPGRVNL----IGEHID-YEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHH 123 (499)
Q Consensus 49 ~~~~APgrv~L----~GEH~d-~~G~~~l~~AId~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~~~~~ 123 (499)
+.++||||||| .|+|+| |+...++.+|||+++++.+++.++ ..+++.+.. .. ++ .
T Consensus 3 ~~~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~----~~i~i~~~~-----~~--~~-------~-- 62 (283)
T 2ww4_A 3 TQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDD----GDIRLLTPV-----EG--VE-------H-- 62 (283)
T ss_dssp EEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESS----SCEEECSCB-----TT--BC-------G--
T ss_pred ccccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCC----CcEEEEeCC-----CC--CC-------C--
Confidence 34679999999 799999 555669999999999999998766 456664310 00 11 1
Q ss_pred CccchHHHHHHHHHHHHHHc---CCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 010850 124 QWGHYFICGYKAFYEYVKAK---GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 200 (499)
Q Consensus 124 ~~~~~v~~~i~~v~~~l~~~---~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~ 200 (499)
..|++..+++.+.+.+... +. ..|++|.++++||.++|||||||+++|++.|++++++.++++++++++|.+
T Consensus 63 -~~nlv~~a~~~~~~~~~~~~~~g~----~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~ 137 (283)
T 2ww4_A 63 -EDNLIVRAARLLMKTAADSGRLPT----GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLT 137 (283)
T ss_dssp -GGSHHHHHHHHHHHHHHHTTCSCT----TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred -cccHHHHHHHHHHHHhhhhcccCC----CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Confidence 1377765444443332110 43 369999999999999999999999999999999999999999999999998
Q ss_pred HhhhhCCCCCchhhhhhhhhcCCceEEeecCCCeeEEeecCCCcEEEEEeCCCccc
Q 010850 201 CEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 256 (499)
Q Consensus 201 ~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~~~~~~~i~~p~~~~~vl~~s~~~~~ 256 (499)
+|. |..++++||. .+........+++++| ++.+++++|+++.+
T Consensus 138 ~e~---------dv~~~~~gg~---~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~s 180 (283)
T 2ww4_A 138 LGA---------DVPVFVRGHA---AFAEGVGEILTPVDPP-EKWYLVAHPGVSIP 180 (283)
T ss_dssp TCT---------THHHHHHTBC---EEEETTTTEEEECCCC-CCEEEEECCSCCCC
T ss_pred hCC---------CHHHhhcCCe---EEEEecCccceEcCCC-CcEEEEEeCCCCCc
Confidence 862 8999999985 3444444556677666 78999999987543
No 24
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.86 E-value=5.7e-19 Score=184.36 Aligned_cols=286 Identities=12% Similarity=0.115 Sum_probs=179.2
Q ss_pred eEEEccceeeeeccccccC------CCeeeEeecc---cceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCcccc
Q 010850 49 VYARCPGRVNLIGEHIDYE------GYSVLPMAIR---QDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEID 119 (499)
Q Consensus 49 ~~~~APgrv~L~GEH~d~~------G~~~l~~AId---~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~~~~ 119 (499)
++++||++|.|++.|..+. ..+.|+++++ ++++++++...+. ..+++ .++.. ..+
T Consensus 26 ~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~~~v~~~~~~---~~~~i------------~i~G~-~~~ 89 (416)
T 1fi4_A 26 ASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEF---ERDTL------------WLNGE-PHS 89 (416)
T ss_dssp EEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTC---CSCBC------------TTTCC-BSS
T ss_pred EEEEecceEEEEecccccCCceecccccceEEEEEcCCCcceEEEEEcCCC---CccEE------------EECCc-ccc
Confidence 6799999999998888654 4568999998 8888888764320 01111 11110 000
Q ss_pred cccCCccchHHHHHHHHHHHHHH---cCCCCC--CCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHH
Q 010850 120 MKHHQWGHYFICGYKAFYEYVKA---KGLDVG--PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEI 194 (499)
Q Consensus 120 ~~~~~~~~~v~~~i~~v~~~l~~---~~~~~~--~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l 194 (499)
. ..+++..+++.+.+.+.. .+...+ ...|++|.+.++||.++|||||||.++|++.|+++++++++++++|
T Consensus 90 -~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eL 165 (416)
T 1fi4_A 90 -I---DNERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEI 165 (416)
T ss_dssp -S---SSSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHH
T ss_pred -c---cchHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 0 135565444444333322 000000 0268999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecC------CCeeEEeec---CCCcEEE--EEeCCCcccccccccc
Q 010850 195 AQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN------PIRTTDVQL---PAGGTFV--VAHSLAESLKAITAAS 263 (499)
Q Consensus 195 ~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~------~~~~~~i~~---p~~~~~v--l~~s~~~~~~~~~~~~ 263 (499)
+++|.+++ + +...+++||+ +.+... .....+++. .+++.++ +++++.. ....+.
T Consensus 166 a~lA~~g~--------G-s~~~sl~GG~---v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~---~~sst~ 230 (416)
T 1fi4_A 166 SRIARKGS--------G-SACRSLFGGY---VAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKK---DVSSTQ 230 (416)
T ss_dssp HHHHHHHH--------G-GGGGGGSSSE---EEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSC---CCCHHH
T ss_pred HHHHhccC--------C-chheEeeCCc---EEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCC---CcCCHH
Confidence 99998763 1 4566899984 333321 123345543 2366643 4444321 101111
Q ss_pred cchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhh
Q 010850 264 NYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLT 343 (499)
Q Consensus 264 ~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~ 343 (499)
.|+.+ ++..+
T Consensus 231 ~~~~~-------------------------------------------------------~~~~~--------------- 240 (416)
T 1fi4_A 231 GMQLT-------------------------------------------------------VATSE--------------- 240 (416)
T ss_dssp HHHHH-------------------------------------------------------HHHCS---------------
T ss_pred HHHHH-------------------------------------------------------hhcCH---------------
Confidence 11100 00000
Q ss_pred hhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhHhhhhhc-------CCC
Q 010850 344 SIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-------ECS 416 (499)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-------~vs 416 (499)
...+++.++. ..++..++.||.++ |++.||++|.++|..+...+ ...
T Consensus 241 -------------------~~~~~~~~i~--~~~~~~l~~AL~~g-----D~~~~g~~~~~d~~~lh~~~~~~~p~~~~l 294 (416)
T 1fi4_A 241 -------------------LFKERIEHVV--PKRFEVMRKAIVEK-----DFATFAKETMMDSNSFHATCLDSFPPIFYM 294 (416)
T ss_dssp -------------------HHHHHHHTHH--HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCC
T ss_pred -------------------hHHHHHHHHH--HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 0001112111 24667788999986 79999999977666655432 123
Q ss_pred CHHHHHHHHHHHh----CC-CceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHH
Q 010850 417 CPELEELVNVCRN----NG-ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 467 (499)
Q Consensus 417 ~peld~lv~~a~~----~G-a~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~ 467 (499)
.|....+++.+.+ .| +.++.+||+| +++++|++++.++++.+++++.|.
T Consensus 295 ~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 295 NDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAVLYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEEEEEEGGGHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEEEEECHHHHHHHHHHHHHhcc
Confidence 6677888776543 38 7888899888 899999987778889999987775
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.78 E-value=1.6e-16 Score=164.10 Aligned_cols=280 Identities=11% Similarity=0.149 Sum_probs=168.5
Q ss_pred EEEccceeee-----eccccc-c----CCCeeeEeecc---cceEEEEEECCCcCCcceEEEEeCCCCCCceeecCCCCc
Q 010850 50 YARCPGRVNL-----IGEHID-Y----EGYSVLPMAIR---QDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQ 116 (499)
Q Consensus 50 ~~~APgrv~L-----~GEH~d-~----~G~~~l~~AId---~~~~v~~~~~~~~~~~~~i~i~s~~~~~~~~~~~l~~~~ 116 (499)
.+.||+++|| .|..-| + ++.++|++|++ +|++++++..++. ....+.+. . ... +
T Consensus 5 ~~~a~A~~Nial~ky~Gkrddg~~~~vP~~dslglaL~~~~l~~~~~v~~~~~~-~~~~i~i~--g-----~~~--~--- 71 (380)
T 2hke_A 5 CVTVEAPINIAFIKYWGKREGGETLILPTNDSFSITLSASPFRSKTSVELRDDI-ETDTLRLN--G-----TEV--D--- 71 (380)
T ss_dssp EEEEEECCEEEEECCCCBCTTCTTTTCBSSCEEEEEBCSSSCCEEEEEEEESSC-SSCEEEET--T-----EEE--C---
T ss_pred cEEEEcCccchhhhhcccccCcccccCCCCCceEEEecCCCCceEEEEEECCCC-CccEEEEC--C-----ccc--C---
Confidence 4556666665 355544 5 78899999999 9999988864320 00223321 1 000 0
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHc-CCCCCCCCCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHH
Q 010850 117 EIDMKHHQWGHYFICGYKAFYEYVKAK-GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 195 (499)
Q Consensus 117 ~~~~~~~~~~~~v~~~i~~v~~~l~~~-~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~ 195 (499)
.. -.+.+ ..++..+++. +... ...|++|.++++||.++|||||||.++|++.|++++++++ ++++
T Consensus 72 ---~~---~~~~v----~~~~~~~~~~~~~~~-~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~ 137 (380)
T 2hke_A 72 ---VG---KTPRV----QSMLLHLRSTCPEEL-KNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVS 137 (380)
T ss_dssp ---GG---GCHHH----HHHHHHHHTSSCHHH-HTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHH
T ss_pred ---ch---hHHHH----HHHHHHHHHHhcccC-CCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHH
Confidence 00 11344 3344445443 2200 0268999999999999999999999999999999999987 8899
Q ss_pred HHHHHHhhhhCCCCCchhhhhhhhhcCCceEEeecC------CCeeEEeecC---CCcEEEEEeCCCcccccccccccch
Q 010850 196 QLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN------PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYN 266 (499)
Q Consensus 196 ~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i~~~------~~~~~~i~~p---~~~~~vl~~s~~~~~~~~~~~~~y~ 266 (499)
++|...+ .|.+.++|||+ +.+... .....+++.+ +++.++++.+..+.... ..
T Consensus 138 ~lA~~g~---------Gsva~s~~GG~---v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~-ss----- 199 (380)
T 2hke_A 138 MLARLGS---------GSACRSAFGGF---VIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDV-SS----- 199 (380)
T ss_dssp HHHHHHC---------GGGGGGGSSSE---EEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCC-CH-----
T ss_pred HHHhhcC---------cceeeehhCCe---EEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCC-CC-----
Confidence 9997753 15677899995 333321 1234566542 35654444322110000 00
Q ss_pred hHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhh
Q 010850 267 NRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIF 346 (499)
Q Consensus 267 ~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~ 346 (499)
+ .+ .++.++..+. .+
T Consensus 200 -t-~~------------------------------------------------~r~~~~~~~~-~~-------------- 214 (380)
T 2hke_A 200 -T-KG------------------------------------------------MQQSLKTSPL-MK-------------- 214 (380)
T ss_dssp -H-HH------------------------------------------------HHHHHHHCTT-HH--------------
T ss_pred -H-HH------------------------------------------------HHHHHhcChh-HH--------------
Confidence 0 00 0001111100 00
Q ss_pred hcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----HhHhhhhhc---CCCCHH
Q 010850 347 ANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMND----SHHSCSVLY---ECSCPE 419 (499)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~al~~~~~~~~d~~~lg~lm~~----sh~~lr~~~---~vs~pe 419 (499)
.++.++ ...++..++.||.++ |++.||++|.+ .|+.+++.+ ....|+
T Consensus 215 -------------------~~~~~~--~~~~~~~l~~Al~~~-----D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~ 268 (380)
T 2hke_A 215 -------------------KRISET--VPERMKIASRAIKAR-----DFATFAEIAMLESDDLQEICATTEPKITYATED 268 (380)
T ss_dssp -------------------HHHHTH--HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHH
T ss_pred -------------------HHHHHH--HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhhccCCCeeEECHH
Confidence 001110 124666788999876 79999999954 454444332 234788
Q ss_pred HHHHHHHHHhC----C-CceeEecCcCCcceEEEEEeCCchHHHHHHHHHHHH
Q 010850 420 LEELVNVCRNN----G-ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 467 (499)
Q Consensus 420 ld~lv~~a~~~----G-a~GaklsGaG~GG~viaL~~~~~~~~~~~~l~~~~~ 467 (499)
...+++.+++. | +.++.+||+| +++++|+++++++++.+++++.|.
T Consensus 269 ~~~i~~~~~~~~~~~Ga~~~a~~SGaG--Ptv~~l~~~~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 269 SYAMIRLVKAYNAKKGRTALAYTFDAG--ANCFLFVLKEDLPEAVAMLMEHFP 319 (380)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEEEGGGHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCcceEEEECCC--CcEEEEECHHHHHHHHHHHHHhcc
Confidence 88888886553 8 8889999777 899999987778888989887654
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.68 E-value=7.4e-15 Score=147.41 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=134.1
Q ss_pred CCeEEEEEecCCCCCCCCchHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCce
Q 010850 151 VGLDILVDGTVPTGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 225 (499)
Q Consensus 151 ~g~~i~i~s~iP~g~GLGSSaA~~va~~----~al~~~~~~~l-~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~ 225 (499)
.|++|.+.++||.++|||||||.++|++ .|+++++++++ +++++.++|..++ | +...|+|||+
T Consensus 91 ~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs-------G--saa~si~GG~--- 158 (323)
T 3lto_A 91 GGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS-------G--SSCRSFYAPW--- 158 (323)
T ss_dssp CCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC-------G--GGGGGGSCSE---
T ss_pred CCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-------C--CcchhhhCCE---
Confidence 7999999999999999999999999999 99999999999 9999999997642 1 4566999994
Q ss_pred EEeecCCCeeEEee-cCCCcEEEEEe-CCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 010850 226 ELIDFNPIRTTDVQ-LPAGGTFVVAH-SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 303 (499)
Q Consensus 226 ~~i~~~~~~~~~i~-~p~~~~~vl~~-s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~~~ 303 (499)
+.+.. ...+++. .++++.++++. +.... . +++.+.
T Consensus 159 v~~~~--g~~~~l~~~~~~l~~~v~vi~~~~~---~-------------------------vsT~~~------------- 195 (323)
T 3lto_A 159 ALWTG--DKVSAIDLPYKDLLHQVIVISSQEK---E-------------------------IPSRVA------------- 195 (323)
T ss_dssp EEEET--TEEEECCCSCCSCEEEEEECCCCTT---C-------------------------CCHHHH-------------
T ss_pred EEEec--CcEEEccCCCCCCeEEEEEECCCCC---C-------------------------CCCHHH-------------
Confidence 32221 1333442 22356664443 32210 0 111100
Q ss_pred hhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHHHHHHHHHHH
Q 010850 304 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 383 (499)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E~~rv~~~~~ 383 (499)
++.+...++- -.+..+ ...++..++.
T Consensus 196 -----------------~~~l~~~~~~----------------------------------~~~~~~---~~~~~~~l~~ 221 (323)
T 3lto_A 196 -----------------HKLVKTSPFY----------------------------------ETRSER---AEANLKLLLN 221 (323)
T ss_dssp -----------------HHHGGGSTTT----------------------------------TTHHHH---HHHHHHHHHH
T ss_pred -----------------HhhcccChhH----------------------------------HHHHHH---hHHHHHHHHH
Confidence 0001111000 000000 1246777899
Q ss_pred HHhcCCcchHHHHHHHHHHH----HHhHhhhhhc---CCCCHHHHHHHHHHHh----CCCceeEecCcCCcceEEEEEeC
Q 010850 384 TVSSNLSEEDKLKKLGDLMN----DSHHSCSVLY---ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVALVKE 452 (499)
Q Consensus 384 al~~~~~~~~d~~~lg~lm~----~sh~~lr~~~---~vs~peld~lv~~a~~----~Ga~GaklsGaG~GG~viaL~~~ 452 (499)
+|.++ |++.|+++|. .-|+.++..+ -.-.|+...+++.+++ .|++|+.++||| +++++|+++
T Consensus 222 AL~~g-----D~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~~ 294 (323)
T 3lto_A 222 AFENK-----DWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYRS 294 (323)
T ss_dssp HHHTT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEEEECG
T ss_pred HHHcC-----CHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEEEEec
Confidence 99986 7999999874 3566555531 1237887777777644 699999999999 778888988
Q ss_pred CchHHHHHHHHHHHH
Q 010850 453 SIDSQFILNLKEQFY 467 (499)
Q Consensus 453 ~~~~~~~~~l~~~~~ 467 (499)
++.+++.+.+++.+.
T Consensus 295 ~~~~~v~~~l~~~~~ 309 (323)
T 3lto_A 295 DQTDLARQFKSDHLV 309 (323)
T ss_dssp GGHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHhH
Confidence 889999999976553
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.58 E-value=6e-13 Score=136.55 Aligned_cols=202 Identities=12% Similarity=0.138 Sum_probs=135.1
Q ss_pred CCeEEEEEecCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCchhhhhhhhhcCCceEEe-e
Q 010850 151 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI-D 229 (499)
Q Consensus 151 ~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~i-~ 229 (499)
.+++|.+.++||.++|||||||.++|++.|+++++++ .+++.++|..++ .+...|+|||+ +.+ .
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s---------Gs~~~s~~GG~---v~w~~ 186 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS---------GSACRSLYGGF---VEWQM 186 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC---------GGGGGGGSSSE---EEECC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC---------CCcchHhhCCE---EEEEe
Confidence 5899999999999999999999999999999999998 467888887752 14566899994 333 2
Q ss_pred cC-----CCeeEEeecC---CCcEEEEEeCCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhh
Q 010850 230 FN-----PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVE 301 (499)
Q Consensus 230 ~~-----~~~~~~i~~p---~~~~~vl~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~g~~~~~~~~~~~~L~~v~ 301 (499)
+. .....+++.+ +++.++++.+.....+... | .+
T Consensus 187 ~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsS-------T-----~~-------------------------- 228 (414)
T 3f0n_A 187 GEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGS-------T-----VG-------------------------- 228 (414)
T ss_dssp CSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCH-------H-----HH--------------------------
T ss_pred ccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCc-------h-----HH--------------------------
Confidence 21 1233455432 3677777664321111000 0 00
Q ss_pred hhhhhhhccCCCCCchhHHHHhhhcCCCCHHHHHHHhhhhhhhhhhcCCCchhhhhhhhhhhhhhhHhHHHHH--HHHHH
Q 010850 302 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE--AKRVH 379 (499)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~E--~~rv~ 379 (499)
.+..++..+ .++ +.+.. ..|+.
T Consensus 229 ------------------mr~~l~ts~-----------------------------------~~~---~~v~~~~~~~~~ 252 (414)
T 3f0n_A 229 ------------------MQTSVETST-----------------------------------LLK---FRAESVVPERMK 252 (414)
T ss_dssp ------------------HHHHHHHCH-----------------------------------HHH---HHHHHTHHHHHH
T ss_pred ------------------HHhhcccCc-----------------------------------cHH---HHHHHHHHHHHH
Confidence 000000000 001 11111 25777
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHH----HHhHhhhhhc---CCCCHHHHHHHHHHHhC-----CCceeEecCcCCcceEE
Q 010850 380 AFKDTVSSNLSEEDKLKKLGDLMN----DSHHSCSVLY---ECSCPELEELVNVCRNN-----GALGARLTGAGWGGCVV 447 (499)
Q Consensus 380 ~~~~al~~~~~~~~d~~~lg~lm~----~sh~~lr~~~---~vs~peld~lv~~a~~~-----Ga~GaklsGaG~GG~vi 447 (499)
.++.||.++ |++.||+++. ..|+.+++-+ -.-+|+...+++.+++. |++++.++||| ++++
T Consensus 253 ~l~~AL~~g-----D~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG--Pnv~ 325 (414)
T 3f0n_A 253 EMTRCIQEQ-----DFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG--PNAV 325 (414)
T ss_dssp HHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEE
T ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC--CCEE
Confidence 889999986 7999999864 3677776631 22388888888877652 89999999999 7889
Q ss_pred EEEeCCchHHHHHHHHHHHHh
Q 010850 448 ALVKESIDSQFILNLKEQFYQ 468 (499)
Q Consensus 448 aL~~~~~~~~~~~~l~~~~~~ 468 (499)
+|+++++.+++.+.|++.|..
T Consensus 326 vl~~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 326 IFTLEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp EEEEHHHHHHHHHHHHHHSCC
T ss_pred EEEecccHHHHHHHHHHhcCC
Confidence 999888899999999766543
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=57.27 E-value=19 Score=29.70 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHhCCCceeEecCcCCcc----e-EEEEEeCCchHHHHHHHHHHHHhcc
Q 010850 417 CPELEELVNVCRNNGALGARLTGAGWGG----C-VVALVKESIDSQFILNLKEQFYQSR 470 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~GaklsGaG~GG----~-viaL~~~~~~~~~~~~l~~~~~~~~ 470 (499)
...+|.+.+...+.|..|.+++-.|++| + +...++++.++++++.+.+.-+.+.
T Consensus 15 p~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR~ 73 (114)
T 3m05_A 15 DKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTRE 73 (114)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCce
Confidence 4568899998889999999888776544 3 4445678899999999998776543
No 29
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=47.31 E-value=34 Score=27.69 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+-|..++ |-|- |. -+..+++++.++++++.+.+..+...+
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~--- 86 (112)
T 2eg2_A 10 PFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTGRV--- 86 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 4568888998888887776543 2222 11 366677888999999999987754321
Q ss_pred cccCCCCcceEEEeeCCC
Q 010850 475 VINNNDLGLYVFASKPSS 492 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 87 ---G---dGkiFV~pVe~ 98 (112)
T 2eg2_A 87 ---G---DGKIFIIPVED 98 (112)
T ss_dssp ---T---CCEEEEEECSC
T ss_pred ---C---CEEEEEEEhHh
Confidence 1 34677776554
No 30
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=47.16 E-value=28 Score=28.63 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cce-----------------EEEEEeCCchHHHHHHHHHHHHh
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GGC-----------------VVALVKESIDSQFILNLKEQFYQ 468 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG~-----------------viaL~~~~~~~~~~~~l~~~~~~ 468 (499)
...++.+.+++.+.|+-|..++ |-|- |-. +..+++++.++++++.+.+..+.
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~t 85 (119)
T 2j9c_A 12 PEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENART 85 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 4578899999999888776543 2232 211 67778888999999999987754
No 31
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=46.41 E-value=58 Score=26.34 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC-cc------------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~-GG------------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+-|..++ |-|- +| -+..+++++.++++++.+.+..+...+
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~--- 88 (114)
T 3bzq_A 12 PFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKI--- 88 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCCC---
Confidence 4568888888888887766543 3232 12 366777889999999999987754321
Q ss_pred cccCCCCcceEEEeeCCC
Q 010850 475 VINNNDLGLYVFASKPSS 492 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 89 ---G---dGkiFV~pVe~ 100 (114)
T 3bzq_A 89 ---G---DGKVWVSPVDT 100 (114)
T ss_dssp ---T---CCEEEEEEESC
T ss_pred ---C---CEEEEEEEhHH
Confidence 1 34677766554
No 32
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=44.52 E-value=46 Score=26.84 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+-|..++ |-|- |- -+..+++++.++++++.+.+..+...+
T Consensus 10 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~~--- 86 (112)
T 1hwu_A 10 PFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAARTGKI--- 86 (112)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 4568889998888888776554 3332 21 344556778899999999987754321
Q ss_pred cccCCCCcceEEEeeCCC
Q 010850 475 VINNNDLGLYVFASKPSS 492 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 87 ---G---dGkiFV~~V~~ 98 (112)
T 1hwu_A 87 ---G---DGKIFVQEVEQ 98 (112)
T ss_dssp ---T---CCEEEEEECSE
T ss_pred ---C---CEEEEEEEhHH
Confidence 1 34677665544
No 33
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=43.16 E-value=37 Score=27.66 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+-|..++ |-|- |. .+..+++++.++++++++.+..+...+
T Consensus 10 ~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~--- 86 (116)
T 1vfj_A 10 PEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAARTGEV--- 86 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 4568889998888887766543 3332 12 477788889999999999987754321
Q ss_pred cccCCCCcceEEEeeCCC
Q 010850 475 VINNNDLGLYVFASKPSS 492 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 87 ---G---dGkiFV~pVe~ 98 (116)
T 1vfj_A 87 ---G---DGKIFVLPVEK 98 (116)
T ss_dssp ---T---CCEEEEEECSE
T ss_pred ---C---CEEEEEEEhHH
Confidence 1 34677665544
No 34
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=40.03 E-value=68 Score=25.95 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+.|..++ |-|- |. -+..+++++.++++++.+.+..+...+
T Consensus 12 ~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~tg~~--- 88 (114)
T 2gw8_A 12 PFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARSGKI--- 88 (114)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCCCCC---
Confidence 4568889998888888776543 2222 21 344556788899999999987754221
Q ss_pred cccCCCCcceEEEeeCCC
Q 010850 475 VINNNDLGLYVFASKPSS 492 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 89 ---G---dGkiFV~pVe~ 100 (114)
T 2gw8_A 89 ---G---DGKIFVLPVEE 100 (114)
T ss_dssp ---T---CCEEEEEEESC
T ss_pred ---C---CEEEEEEEhHH
Confidence 1 34677766554
No 35
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=39.89 E-value=47 Score=27.36 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC-cc------------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~-GG------------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+.|..++ |-|- +| -+..+++++.++++++.+.+.-+...+
T Consensus 10 p~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG~~--- 86 (118)
T 3t9z_A 10 PEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTGKF--- 86 (118)
T ss_dssp GGGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCCCC---
Confidence 4578899998888888876554 4443 12 245556788999999999887643221
Q ss_pred cccCCCCcceEEEeeCCCcee
Q 010850 475 VINNNDLGLYVFASKPSSGAA 495 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~Ga~ 495 (499)
. +..+|++...+-.+
T Consensus 87 ---G---DGkIFV~~Ve~~vr 101 (118)
T 3t9z_A 87 ---G---DGRIFVIPVEKSVK 101 (118)
T ss_dssp ---T---CCEEEEEECCEEEE
T ss_pred ---C---CeEEEEEEhHHeEE
Confidence 2 34677776555433
No 36
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=38.38 E-value=46 Score=28.17 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhCCCceeEe---cCcCCc-c-------------------eEEEEEeCCchHHHHHHHHHHHHhcccCC
Q 010850 417 CPELEELVNVCRNNGALGARL---TGAGWG-G-------------------CVVALVKESIDSQFILNLKEQFYQSRIDR 473 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakl---sGaG~G-G-------------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~ 473 (499)
...++.+.+++.+.|+.|..+ .|-|-. | -+..+++++.++++++.+.+..+...+
T Consensus 22 ~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~tg~~-- 99 (135)
T 2o66_A 22 PWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEI-- 99 (135)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST--
T ss_pred HHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCCCCC--
Confidence 456788888888888877655 333321 1 366677888999999999988764322
Q ss_pred CcccCCCCcceEEEeeCCC
Q 010850 474 GVINNNDLGLYVFASKPSS 492 (499)
Q Consensus 474 ~~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 100 ----G---dGkIFV~pVe~ 111 (135)
T 2o66_A 100 ----G---DGKIFVLPVSD 111 (135)
T ss_dssp ----T---CCEEEEEEECE
T ss_pred ----C---CEEEEEEEhHH
Confidence 1 34677665443
No 37
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=37.67 E-value=48 Score=27.35 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+.|..++ |-|- |. -+..+++++.++++++.+.+.-+...+
T Consensus 10 p~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG~~--- 86 (119)
T 3ncq_A 10 AEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTGSP--- 86 (119)
T ss_dssp TTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 4568899998888888876543 4443 21 245566788999999999986653221
Q ss_pred cccCCCCcceEEEeeCCCcee
Q 010850 475 VINNNDLGLYVFASKPSSGAA 495 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~Ga~ 495 (499)
. +..+|++...+-.+
T Consensus 87 ---G---DGkIFV~~Ve~~vr 101 (119)
T 3ncq_A 87 ---G---DGKIFIIPVEDVVR 101 (119)
T ss_dssp ---T---CCEEEEEECSEEEE
T ss_pred ---C---CCEEEEEEhHheEE
Confidence 2 34678776655443
No 38
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=31.34 E-value=89 Score=25.35 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHhCCCceeEe---cCcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakl---sGaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.+++.+.|+-|..+ .|-|- |. -+..+++++.++++++.+.+..+...+
T Consensus 14 ~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~~--- 90 (116)
T 2ns1_B 14 PFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKI--- 90 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 457888888888888766543 34443 11 345556788999999999988764332
Q ss_pred cccCCCCcceEEEeeCCC
Q 010850 475 VINNNDLGLYVFASKPSS 492 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~ 492 (499)
. +..+|++...+
T Consensus 91 ---G---dGkiFV~pVe~ 102 (116)
T 2ns1_B 91 ---G---DGKIFVAELQR 102 (116)
T ss_dssp ---T---CCEEEEEEESC
T ss_pred ---C---CEEEEEEEhHH
Confidence 1 34677766544
No 39
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=27.26 E-value=1.2e+02 Score=24.82 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC-cc------------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~-GG------------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.++..+.|+.|..++ |-|- +| -+..+++++.++++++.+.+.-+...+
T Consensus 10 p~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~~--- 86 (116)
T 4aff_A 10 PFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEN--- 86 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST---
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC---
Confidence 4568888888888888775543 4443 12 244556778999999999887653221
Q ss_pred cccCCCCcceEEEeeCCCcee
Q 010850 475 VINNNDLGLYVFASKPSSGAA 495 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~Ga~ 495 (499)
. +..+|++...+-.+
T Consensus 87 ---G---DGkIFV~~Ve~~vr 101 (116)
T 4aff_A 87 ---G---DGKIFVSPVDQTIR 101 (116)
T ss_dssp ---T---CEEEEEEECSCCBC
T ss_pred ---C---CeEEEEEEhHHeEE
Confidence 1 45788877665444
No 40
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=26.46 E-value=88 Score=25.72 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHhCCCceeEecC---cCCc-c----------eEEEEEeCCchHHHHHHHHHHHHh
Q 010850 417 CPELEELVNVCRNNGALGARLTG---AGWG-G----------CVVALVKESIDSQFILNLKEQFYQ 468 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~GaklsG---aG~G-G----------~viaL~~~~~~~~~~~~l~~~~~~ 468 (499)
.+.++.+.+++.+.|+-|.-+++ -|-. | -+..+++++.++++++.+.+..+.
T Consensus 34 ~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 34 SLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 66789999999998887765543 2321 1 355566677899999999865543
No 41
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=23.59 E-value=1.5e+02 Score=23.84 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHhCCCceeEec---CcCC--cc-----------------eEEEEEeCCchHHHHHHHHHHHHhcccCCC
Q 010850 417 CPELEELVNVCRNNGALGARLT---GAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 474 (499)
Q Consensus 417 ~peld~lv~~a~~~Ga~Gakls---GaG~--GG-----------------~viaL~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (499)
...++.+.++..+.|+.|..++ |-|- |. -+..+++++.++++++.+.+.-+...
T Consensus 10 ~~kl~~vk~AL~~~G~~g~Tv~~v~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~v~~vv~~I~~~~~tg~---- 85 (112)
T 3mhy_A 10 PFKLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDDQYEQVVEAIQKAANTGR---- 85 (112)
T ss_dssp GGGHHHHHHHHHHHTCCCEEEEEEEEECTTTTCC---------CCCEEEEEEEEEECTTTHHHHHHHHHHHHCCSS----
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEEEeEccccCCcceeccceeeecccceEEEEEEEchHHHHHHHHHHHHHhcCCC----
Confidence 4568888888888887775543 4443 22 24556788899999999988764322
Q ss_pred cccCCCCcceEEEeeCCCcee
Q 010850 475 VINNNDLGLYVFASKPSSGAA 495 (499)
Q Consensus 475 ~~~~~~~~~~~~~~~p~~Ga~ 495 (499)
. . +..+|++...+-.+
T Consensus 86 -~-G---dGkIfV~~v~~~~r 101 (112)
T 3mhy_A 86 -I-G---DGKIFVLDIAQAVR 101 (112)
T ss_dssp -T-T---CCEEEEEECSEEEE
T ss_pred -C-C---CeEEEEEEhHheEE
Confidence 1 2 34677776555433
Done!