RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 010850
(499 letters)
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 915 bits (2367), Expect = 0.0
Identities = 367/499 (73%), Positives = 428/499 (85%), Gaps = 3/499 (0%)
Query: 1 MARHEELPVPTFWSLKAVYGEGLQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLI 60
MA+HEE PVP F SL+ VYG+G LEEA R+ L + F++V+ PD++AR PGRVNLI
Sbjct: 1 MAKHEEEPVPVFSSLEPVYGDGSLLEEARLRYARLKAAFVEVYGAKPDLFARSPGRVNLI 60
Query: 61 GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDM 120
GEHIDYEGYSVLPMAIRQDTIVAIR+ E K L+IANV+DKY CT+PA+PDQE+D+
Sbjct: 61 GEHIDYEGYSVLPMAIRQDTIVAIRRA---EGSKKLRIANVNDKYTTCTFPADPDQEVDL 117
Query: 121 KHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVA 180
+H+WG+YFICGYK +E++K+KG+DVGPPVGLD++VDGTVPTGSGLSSS A VCS+ +A
Sbjct: 118 ANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIA 177
Query: 181 LMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL 240
+MAA G+ KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G A+LIDFNP+R TDVQL
Sbjct: 178 IMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQL 237
Query: 241 PAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDV 300
PAGGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KLGM +EAISKVKTLSDV
Sbjct: 238 PAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDV 297
Query: 301 EGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 360
EGLCV+FA +GSSDP AVKE L + PYTA +IE+I E LTSIF NS +SL VL AAK
Sbjct: 298 EGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAK 357
Query: 361 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPEL 420
+KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN+SH+SCSVLYECSCPEL
Sbjct: 358 HFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPEL 417
Query: 421 EELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNND 480
EELV VCR+NGALGARLTGAGWGGC VALVKE+I QFIL LKE+FY+SRI++GVI D
Sbjct: 418 EELVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEED 477
Query: 481 LGLYVFASKPSSGAAKFKF 499
LGLYVFASKPSSGAA KF
Sbjct: 478 LGLYVFASKPSSGAAILKF 496
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 256 bits (655), Expect = 9e-81
Identities = 137/479 (28%), Positives = 189/479 (39%), Gaps = 110/479 (22%)
Query: 34 NLNSKFIQVF-AQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEA 92
L + F + F P V A PGRVNLIGEH DY G VLP AI T VA+ K D +
Sbjct: 8 KLQALFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGK- 66
Query: 93 EKVLKIANVSDKYNMCTYPAEPDQEID----------MKHHQWGHYFICGYKAFYEYVKA 142
+ Y A D K W +Y KA +
Sbjct: 67 --------------VRLYSANFGNAGDIFFLLLDIAKEKIDDWANYVKGVIKALQKR--- 109
Query: 143 KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202
G GLDI++ G +P G+GLSSS A + +AL F + + K E+A++ E
Sbjct: 110 -GYAFT---GLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAE 165
Query: 203 -QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAIT 260
QF+G G MDQ S K A L+D + V P GG + V+ +S K
Sbjct: 166 NQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KREL 222
Query: 261 AASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAV 320
A S YN R EC A L + + K+L DV + + A+
Sbjct: 223 ADSEYNERRAECEEAAEFLGVSI-----------KSLRDV------------TDEEFAAL 259
Query: 321 KEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 380
+ + +P K+ +RA HV +E +RV
Sbjct: 260 QAEIEVDP----------------------------------KIARRARHVVTENQRV-- 283
Query: 381 FKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN-VCRNNGALGARLTG 439
+ L + G+LMN+SH S YE +CPEL+ LV GA GAR+TG
Sbjct: 284 -LEAA--KALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTG 340
Query: 440 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 498
AG+GGCV+ALV + E++ + L + + S GA
Sbjct: 341 AGFGGCVIALVPNDDVEAVAEAVAEEYEKVT---------GLKAAFYVVEASQGAGVCD 390
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 242 bits (619), Expect = 2e-75
Identities = 147/467 (31%), Positives = 197/467 (42%), Gaps = 92/467 (19%)
Query: 34 NLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAE 93
++ F F PD AR PGRVNLIGEH DY SVLP AI T+ A+ D K
Sbjct: 3 SIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVR 62
Query: 94 KVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGL 153
L AN +K+ + D + W +YF E + P+G
Sbjct: 63 IYL--ANADNKFAERSLDLPLDGS---EVSDWANYFKGVLHVAQE----RFNSF--PLGA 111
Query: 154 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGM 212
DI+ G VPTGSGLSSS AF C+ L + + K+I E F+G G M
Sbjct: 112 DIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIM 171
Query: 213 DQAISIMAKSGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNNRVVE 271
DQA S++ K A L++ ++ T + P G FV+A++ +K A SNYN R E
Sbjct: 172 DQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTN---VKRTLAPSNYNTRRQE 228
Query: 272 CRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTA 331
C A LA L D Y A
Sbjct: 229 CTTAANFLAATD----------KGALRDF-------------------------MNEYFA 253
Query: 332 LDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKDTVSS 387
I ++T+ + L +RA HV SE RV A KD
Sbjct: 254 RYIARLTK-------------MLPLVE-------ERAKHVVSENLRVLKAVKAMKD---- 289
Query: 388 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELV-NVCRNNGALGARLTGAGWGGCV 446
D K+ G LMN+SH SC YEC+CPE++ELV + NG+ G+R+TGAG+GGC
Sbjct: 290 ----ND-FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGFGGCT 344
Query: 447 VALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSG 493
V LV + + ++ Y + +L YV SKP +G
Sbjct: 345 VHLVPNENVDKVRQAVADK-YPKKTGL------ELTFYVIVSKPGAG 384
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 174 bits (443), Expect = 1e-49
Identities = 125/460 (27%), Positives = 184/460 (40%), Gaps = 115/460 (25%)
Query: 33 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSK-- 90
+ L KF +VF + + PGR+NLIGEH DY G V P AI T A RK D K
Sbjct: 4 EELKKKFAEVFGEEAEDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKV 63
Query: 91 -------EAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAK 143
E +++ ++ K W +Y K ++++
Sbjct: 64 RLYSANFEDLGIIEFDLDDLSFD--------------KEDDWANYP----KGVLKFLQEA 105
Query: 144 GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE- 202
G + G DIL+ G +P G+GLSSS + + V L F +++ + E+ +L + E
Sbjct: 106 GYKIDH--GFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTEN 163
Query: 203 QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVV------AHSLAESL 256
+FIG SG MDQ M K A L+D N + V L G +V LA+
Sbjct: 164 EFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKRRELAD-- 221
Query: 257 KAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDP 316
S YN R EC ++A+ +++ D++ L
Sbjct: 222 ------SKYNERRAEC---------------EKALEELQKKLDIKSLG------------ 248
Query: 317 VFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAK 376
L E+ E ++ K RA H +E +
Sbjct: 249 --------------ELTEEEFDEYS------------YLIKDETLLK---RARHAVTENQ 279
Query: 377 RV----HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNG 431
R A K L+K G LMN SH S YE + EL+ LV + G
Sbjct: 280 RTLKAVKALKA---------GDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEG 330
Query: 432 ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 471
LGAR+TGAG+GGC +A+VK+ F N+ + Y+ +I
Sbjct: 331 VLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKA-YEEKI 369
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 155 bits (394), Expect = 1e-42
Identities = 133/454 (29%), Positives = 190/454 (41%), Gaps = 106/454 (23%)
Query: 33 DNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEA 92
S F Q F PP + PGRVNLIGEH DY VLP AI T+++ K D +
Sbjct: 5 QKTQSLFAQQFGYPPTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDR-- 62
Query: 93 EKVLKIA----NVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVG 148
V IA N D++++ P P E QW +Y + ++++ + D G
Sbjct: 63 -IVRVIAADYDNQQDEFSL-DAPIVPHPE-----QQWANYV----RGVVKHLQERNPDFG 111
Query: 149 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGT 207
G D+++ G VP G+GLSSS + + + + + EIA E E QF+G
Sbjct: 112 ---GADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGC 168
Query: 208 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNN 267
G MDQ IS + K A LID + T V +P G V+ +S ++K S YN
Sbjct: 169 NCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINS---NVKRGLVDSEYNT 225
Query: 268 RVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKE 327
R +C A VK L DV F DPV A
Sbjct: 226 RRQQCETAA-------------RFFGVKALRDVT--LEQFNAVAAELDPVVA-------- 262
Query: 328 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 387
+RA HV +E R + S+
Sbjct: 263 --------------------------------------KRARHVITENART---LEAASA 281
Query: 388 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELV----NVCRNNGALGARLTGAGWG 443
L+ D LK++G+LM +SH S +E + P+++ LV V + G G R+TG G+G
Sbjct: 282 -LAAGD-LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQG--GVRMTGGGFG 337
Query: 444 GCVVAL--------VKESIDSQF--ILNLKEQFY 467
GC+VAL V++++ Q+ LKE FY
Sbjct: 338 GCIVALVPEELVEAVRQAVAEQYEAKTGLKETFY 371
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 108 bits (273), Expect = 4e-26
Identities = 69/223 (30%), Positives = 96/223 (43%), Gaps = 24/223 (10%)
Query: 52 RCPGRVNLIGEHIDY-EGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTY 110
+ PGRVNLIGEH DY +GY VLP AI T + I K + K S+ +N
Sbjct: 4 KSPGRVNLIGEHTDYNDGY-VLPFAINLYTFLEIEKSE--------KFIFYSENFNEEKT 54
Query: 111 PAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSS 170
E K + W Y + +G +VG + V +P G+GLSSS
Sbjct: 55 FELDKLE---KLNSWADYIKGVIWVL----EKRGYEVGG---VKGKVSSNLPIGAGLSSS 104
Query: 171 TAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKSGFAELID 229
+ + AL A+ + + K E+A L E E +F+G G MDQ K A +D
Sbjct: 105 ASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLD 164
Query: 230 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVEC 272
+ V P +V + +K A+S YN R EC
Sbjct: 165 TMTLEYEYVPFPEDYEILVFDT---GVKRELASSEYNERRQEC 204
Score = 80.4 bits (199), Expect = 2e-16
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 423
L +RA +V E +RV +D L E D ++ LG+L+ +SH + YE SC EL+
Sbjct: 231 LRKRAGYVLRENERVLKVRDA----LKEGD-IETLGELLTESHWDLADNYEVSCEELDFF 285
Query: 424 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 467
V GA GARLTGAG+GG +ALV + L E++
Sbjct: 286 VEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYK 329
>gnl|CDD|204502 pfam10509, GalKase_gal_bdg, Galactokinase galactose-binding
signature. This is the highly conserved galactokinase
signature sequence which appears to be present in all
galactokinases irrespective of how many other ATP
binding sites, etc that they carry. The function of
this domain appears to be to bind galactose, and the
domain is normally at the N-terminus of the enzymes,
EC:2.7.1.6. This domain is associated with the families
GHMP_kinases_C, pfam08544 and GHMP_kinases_N,
pfam00288.
Length = 52
Score = 90.3 bits (225), Expect = 1e-22
Identities = 28/50 (56%), Positives = 32/50 (64%)
Query: 37 SKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRK 86
+KF + F P+ A PGRVNLIGEH DY G VLP AI DT VA+ K
Sbjct: 2 AKFEEFFGVEPEGVASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVSK 51
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 87.2 bits (216), Expect = 2e-18
Identities = 102/426 (23%), Positives = 163/426 (38%), Gaps = 108/426 (25%)
Query: 53 CPGRVNLIGEHIDYEGYSVLPMAIRQ----------DTIVAIRKHDSKEAEKVLKIANVS 102
P R+ +G HID++G +V M I + D V +R S + E ++
Sbjct: 35 SPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLR---SAQFEGEVRFRVDE 91
Query: 103 DKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDV---------GPPVGL 153
++ + ++ +E + WG Y A Y ++++G + G GL
Sbjct: 92 IQHPIANVSSDSKEESN-----WGDY---ARGAVYA-LQSRGHALSQGITGYISGSE-GL 141
Query: 154 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGM 212
D SGLSSS A + +AL A + V ++ +L E +++G ++G +
Sbjct: 142 D---------SSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGIL 192
Query: 213 DQAISIMAKSGFAELIDFNPIRTTDVQLPAGGT-----FVVAHSLAESLKAITAASNYNN 267
DQ+ ++++ G +D + V L F + + + A+T YN
Sbjct: 193 DQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNL 252
Query: 268 RVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKE 327
RV EC+ A L G E + L +VE E
Sbjct: 253 RVSECQEAARFLLEASGNDELEPL-----LCNVE------------------------PE 283
Query: 328 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA-FKDTVS 386
Y A + KL ++ A +RA H +SE RV + S
Sbjct: 284 VYEAH------KCKLEAVLA------------------RRAEHYFSENMRVIKGVEAWAS 319
Query: 387 SNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGC 445
NL E G L++ S S YEC C L +L + + G GAR +GAG+ GC
Sbjct: 320 GNLEE------FGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGC 373
Query: 446 VVALVK 451
VA V
Sbjct: 374 CVAFVD 379
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 79.5 bits (196), Expect = 4e-16
Identities = 64/230 (27%), Positives = 94/230 (40%), Gaps = 18/230 (7%)
Query: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE 113
PGR+NLIGEH DY LP+A+ Q T+V + A+ S + + T P +
Sbjct: 8 PGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADGSARIPLDTTPGQ 67
Query: 114 PDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPV-GLDILVDGTVPTGSGLSSSTA 172
+ G+ A+ V G PV G + + V GSGLSSS A
Sbjct: 68 ----------------VTGWAAYAAGVIWALRGAGHPVPGGAMSITSDVEIGSGLSSSAA 111
Query: 173 FVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKSGFAELIDFN 231
C+ A+ AA G + + E A+L E +++G +G +DQ ++ A LIDF
Sbjct: 112 LECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALLIDFR 171
Query: 232 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 281
+ V VV + + A Y R C A L +
Sbjct: 172 DLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADLGV 221
Score = 66.8 bits (163), Expect = 6e-12
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 342 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 401
++S+ A L L A +RA HV +E +RV F ++ + G L
Sbjct: 221 VSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADS-----DFTAAGQL 275
Query: 402 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 453
+ SH S +E + ++ + + GALGAR+TG G+GGCV+ALV
Sbjct: 276 LTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPAD 327
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 68.7 bits (169), Expect = 7e-15
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 154 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 213
DI ++ +P G+GL SS A + +AL FG+ + K+E+A+L E E IG S G D
Sbjct: 1 DIEIESNIPLGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNS-GDD 59
Query: 214 QAISIM 219
A S+
Sbjct: 60 VAASVY 65
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 69.6 bits (171), Expect = 4e-13
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 391 EEDKLKKLGDLMNDSHHSCSVLYEC---SCPELEELVNVCRNNGALGARLTGAGWGGCVV 447
+ ++LG+LMN + L + S PEL+ELV R+ GALGA+LTGAG GGC++
Sbjct: 221 QTGDFEELGELMNINQG----LLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCII 276
Query: 448 ALVK 451
AL K
Sbjct: 277 ALAK 280
Score = 64.3 bits (157), Expect = 3e-11
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 25/202 (12%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMC 108
+ PG++ L GEH GY + AI V I + DS + V + ++
Sbjct: 1 ISVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKI--------VIESSDLK 52
Query: 109 TYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLS 168
+ E D++ Y + E + + +D +P G+GL
Sbjct: 53 SSTLERDEDEG--------YIQAAVRLASELLN-----QSSLKPFSLEIDSEIPIGAGLG 99
Query: 169 SSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 228
SS A + AL A FGVE+ +E+A+L + E + ++ G+D A G
Sbjct: 100 SSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASGIDIATITY--GGLVAFK 157
Query: 229 DFNPIRTTDVQLPAGGTFVVAH 250
+++ GT V+
Sbjct: 158 KGFDFEK--LEIELLGTLVIGD 177
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 68.7 bits (168), Expect = 1e-12
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 363 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEE 422
+L + SEAK ++ L ++G+LMN +H C L SC EL+
Sbjct: 218 RLLENYNACVSEAKEA-----------LQKGNLFRVGELMNANHDLCQKL-TVSCRELDS 265
Query: 423 LVNVCRNNGALGARLTGAGWGGCVVALVKES 453
+V CR GALGA+++G G GG VVAL
Sbjct: 266 IVQTCRTYGALGAKMSGTGRGGLVVALAASE 296
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 67.3 bits (165), Expect = 2e-12
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 391 EEDKLKKLGDLMNDSH---HSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 447
E+ ++ LG+LMN + + V S P+L++LV + R GALGA+LTGAG GGC++
Sbjct: 217 EDGDVESLGELMNINQGLLKALGV----SHPKLDQLVEIARKAGALGAKLTGAGGGGCMI 272
Query: 448 AL 449
AL
Sbjct: 273 AL 274
Score = 64.6 bits (158), Expect = 2e-11
Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 25/198 (12%)
Query: 54 PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAE 113
PG++ L GEH G + I T V + + S + SD +
Sbjct: 2 PGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIE-SSDGFSFI-----ESDLG--RGSLDD 53
Query: 114 PDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAF 173
E+D +A + + P L+I +D +P G GL SS A
Sbjct: 54 APDELDGLVS-------YVAEALSYFSELN------PPPLEITIDSEIPPGRGLGSSAAV 100
Query: 174 VCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPI 233
+ AL FG E+ K+E+A+L E E+ + G+D A S G
Sbjct: 101 AVALIRALADYFGSELSKEELAELANEAEKIAHGKPSGIDTATSTS--GGPVYFEKGEGE 158
Query: 234 RTTDVQLPAGGTFVVAHS 251
T + L G FV+A +
Sbjct: 159 FTKLISLD--GYFVIADT 174
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 61.7 bits (150), Expect = 4e-12
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 387 SNLSEEDKLKKLGDLMNDSHHSC--SVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 444
L E D L+ LG+L+N++ S + PEL+EL+ R GALGA+L+G+G G
Sbjct: 3 EALREGD-LELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGP 61
Query: 445 CVVALVKESIDSQFILN-LKEQFYQ 468
V AL K+ D++ + L+E +
Sbjct: 62 TVFALFKDEEDAEEVAEALREAYPL 86
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 64.8 bits (158), Expect = 3e-11
Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 40/202 (19%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDT--IVAIRKHDSKEAEKVLKIANVSDKYN 106
++ PGRVN IGEH+DY G V P A+ + +V KH L+ A +D++
Sbjct: 38 LFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHK---LRFATETDEH- 93
Query: 107 MCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSG 166
D KH++ F+ G +D G+ ++V GT+P G+G
Sbjct: 94 -----FVLDHLGGAKHNKAWTTFVRGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAG 148
Query: 167 LSSSTAFVCSSTVALMAAFGVEV---------------------PKKEIAQLTCECE--- 202
+S+S +F VAL+ A V K+E+ +L +
Sbjct: 149 MSASASF----GVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIE 204
Query: 203 -QFIGTQSGGMDQAISIMAKSG 223
+F G G MDQ IS A+
Sbjct: 205 TEFCGVNVGIMDQFISAFAEED 226
Score = 57.1 bits (138), Expect = 9e-09
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 389 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELE---ELVNVCRNNGALGARLTGAGWGGC 445
LS E++ +K G+++N H L + + PEL+ EL+N G G R+ G G+GGC
Sbjct: 356 LSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELIN--EEKGVAGGRMMGGGFGGC 413
Query: 446 VVALVKESIDSQFILNLKEQF 466
++ L+K++ + + +++E+F
Sbjct: 414 IILLLKKNAVDRVVAHVREKF 434
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 59.3 bits (144), Expect = 1e-09
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 393 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 450
LG+LMN + L S EL EL+ R GALGA++TGAG GGC+VAL
Sbjct: 211 GDYVSLGELMNINQGLLDAL-GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALA 267
Score = 47.4 bits (113), Expect = 9e-06
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 139 YVKA---KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 195
YV A K + G+ + + +P GSGL SS A ++ AL G+ + +EIA
Sbjct: 59 YVSAAIEKMREEADKDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIA 118
Query: 196 QLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGT 245
+L + E + + D +S M GF + D + + + G T
Sbjct: 119 KLGHKVELLVQGAASPTDTYVSTMG--GFVTIPDRKKLPFPECGIVVGYT 166
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 152 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202
G+D+L+ ++P G G++SSTA + ++ A G E+ + EIA+L E
Sbjct: 83 GIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 41.6 bits (98), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 147 VGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 197
G P+G+++ V+ +P GSGL SS+A + A++ A G E+ EI +L
Sbjct: 65 YGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRL 115
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 40.1 bits (94), Expect = 0.002
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 42/193 (21%)
Query: 52 RCPGRVNLIGEHIDYEGY------SVLPMAI-RQDTIVAIRKHDSKEAEKVLKIANVSDK 104
R P R+ G D E Y +VL I + + + D + I D+
Sbjct: 5 RAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDE-------IRVRYDR 57
Query: 105 YNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG 164
++ +H + K + + G P +++ P G
Sbjct: 58 TEFV------KSYLENEH---KPLVVESLKRDF-----LEFNGGTP--IELHTQSDAPPG 101
Query: 165 SGLSSSTAFVCSSTVALMAAF----GVEVPKKEIAQLTCECEQFIGTQSGG-MDQAISIM 219
SGL SS+AFV VAL+ A G + E+A+ E E+ GG DQ
Sbjct: 102 SGLGSSSAFV----VALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQ---YA 154
Query: 220 AKSGFAELIDFNP 232
A G ++F
Sbjct: 155 AAFGGFNFMEFRG 167
Score = 34.3 bits (79), Expect = 0.12
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 380 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE-CSCPELEELVNVCRNNGALGARLT 438
KD + N + + G +++ + L S ++ + + NGA G +L+
Sbjct: 232 EMKDALVRN-----DIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLS 286
Query: 439 GAGWGGCVVALVKES 453
GAG GG ++ S
Sbjct: 287 GAGGGGFLLFFCDPS 301
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 39.4 bits (92), Expect = 0.003
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 55/216 (25%)
Query: 48 DVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLK---------- 97
+V AR PG++ L GEH G + + AI T V++R S E + LK
Sbjct: 2 EVKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKDLGLEF 61
Query: 98 ---IANVSD--KYNMCTYPAEP----------------DQEIDMKHHQWGHYFICGYKAF 136
+A + + P+ P +Q I + W G AF
Sbjct: 62 SWPLARIKEALPDLGTPCPSTPTSCSEETLKSIAALVEEQNIP-EAKIW---LSSGVSAF 117
Query: 137 -YEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFG--------- 186
+ Y G + ++V +P GSGL SS AF + + AL+AA
Sbjct: 118 LWLYTSILGFNPA-----TVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGN 172
Query: 187 ----VEVPKKEIA-QLTCECEQFIGTQSGGMDQAIS 217
++ E+ + E E+ I + G+D +S
Sbjct: 173 GWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTVS 208
Score = 31.3 bits (71), Expect = 1.2
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 390 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGA--LGARLTGAGWGGCVV 447
+E+KLK+L + MN L +C + V R L ++LTGAG GGCV+
Sbjct: 291 EKEEKLKELME-MNQG------LLQCMGVSHSSIETVLRTTLKYKLVSKLTGAGGGGCVL 343
Query: 448 ALV 450
L+
Sbjct: 344 TLL 346
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 37.8 bits (88), Expect = 0.007
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 140 VKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 197
+ A G GL++ V+ +P GSGL SS+A V + A++ A GVE+ +I +L
Sbjct: 52 LTAIRSKFGIVDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRL 109
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 37.2 bits (87), Expect = 0.014
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 148 GPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 197
G G + +P SGL SS+A ++ +A + A G ++ +I +L
Sbjct: 71 GIDYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRL 120
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 37.5 bits (87), Expect = 0.016
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 152 GLDILVDGTVPTGSGLSSSTAFVCSSTV--ALMAAFGVEVPKKEIAQLTCECEQFIGTQS 209
G++I + +P GSGL +S+ + ++TV A+ G+ K EI T EQ + T
Sbjct: 726 GIEITLLAAIPAGSGLGTSS--ILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGG 783
Query: 210 GGMDQA 215
G DQ
Sbjct: 784 GWQDQY 789
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase) and
shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054) [Amino
acid biosynthesis, Aspartate family].
Length = 302
Score = 36.6 bits (85), Expect = 0.023
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 133 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 192
Y+ ++ G+ + P + + ++ +P G GL SS A + ++ A G+ + K+
Sbjct: 64 YQVAKRFLDQLGIRMPP---VKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKE 120
Query: 193 EIAQLTCECE 202
+ E E
Sbjct: 121 RLLDYASELE 130
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 36.0 bits (84), Expect = 0.030
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 133 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 192
Y+A ++++ +G G+ I ++ +P G GL SS A + ++ A G+ + K+
Sbjct: 62 YQAALKFLE----ALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKE 117
Query: 193 EIAQLTCECE 202
E+ QL E E
Sbjct: 118 ELLQLALEIE 127
Score = 28.3 bits (64), Expect = 9.3
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 418 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 475
P E+ GALGA L+GAG V AL ES D++ L E+ Y+ I V
Sbjct: 230 PGYAEVREAALEAGALGATLSGAGPT--VFALADES-DAEKAAALLEELYEQGIKGRV 284
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 33.5 bits (78), Expect = 0.27
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 168 SSSTAFVCSSTVALMAAFGV 187
SSS A VC S++ALM A GV
Sbjct: 437 SSSMASVCGSSLALMDA-GV 455
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 33.2 bits (76), Expect = 0.27
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 151 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202
VGL + + +P GSGL SS A ++ VA+ FG + K ++ E E
Sbjct: 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESE 184
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 32.4 bits (75), Expect = 0.47
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 133 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAA---FGVEV 189
Y+A ++++ +G P GL I ++ +P G GL SS A S L+AA G+ +
Sbjct: 66 YQAALKFLE----KLGKPPGLRIELEKNIPLGRGLGSSAA---SIVAGLVAANELAGLPL 118
Query: 190 PKKEIAQLTCECE 202
K+E+ QL E E
Sbjct: 119 SKEELLQLATEGE 131
Score = 29.3 bits (67), Expect = 4.5
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 418 PELEELVNVCRNNGALGARLTGAGWGGCVVAL--------VKESIDSQFILNLKEQFYQS 469
P E+ GALGA ++GA G V AL V +++ F+ ++ +
Sbjct: 234 PGFAEVRQAALEAGALGAGISGA--GPTVFALCDKEDAEKVADALQKAFLQGIEGFVHVL 291
Query: 470 RIDRG 474
R+D
Sbjct: 292 RLDTA 296
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 31.7 bits (73), Expect = 0.90
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 163 TGSGLSSSTAFVCSSTVALMAAFGV 187
S SSS A VC ++ALM A GV
Sbjct: 428 LESNGSSSMASVCGGSLALMDA-GV 451
>gnl|CDD|206769 cd11364, RNase_PH_PNPase_2, Polyribonucleotide
nucleotidyltransferase, repeat 2. Polyribonucleotide
nucleotidyltransferase (PNPase) is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally, all members
of this family form hexameric rings. In the case of
PNPase the complex is a trimer, since each monomer
contains two tandem copies of the domain. PNPase is
involved in mRNA degradation in a 3'-5' direction and in
quality control of ribosomal RNA precursors, with the
second repeat containing the active site. PNPase is part
of the RNA degradosome complex and binds to the
scaffolding domain of the endoribonuclease RNase E.
Length = 223
Score = 31.0 bits (71), Expect = 1.1
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 163 TGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 195
S SSS A VC ++ALM A GV + K +A
Sbjct: 110 LESNGSSSMASVCGGSLALMDA-GVPI-KAPVA 140
>gnl|CDD|143280 cd05872, Ig_Sema4B_like, Immunoglobulin (Ig)-like domain of the
class IV semaphorin Sema4B. Ig_Sema4B_like;
Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B
is a Class IV semaphorin. Semaphorins are classified
based on structural features additional to the Sema
domain. Sema4B has extracellular Sema and Ig domains, a
transmembrane domain and a short cytoplasmic domain.
Sema4B has been shown to preferentially regulate the
development of the postsynaptic specialization at the
glutamatergic synapses. This cytoplasmic domain includes
a PDZ-binding motif upon which the synaptic localization
of Sem4B is dependent. Sema4B is a ligand of CLCP1,
CLCP1 was identified in an expression profiling
analysis, which compared a highly metastic lung cancer
subline with its low metastic parental line. Sema4B was
shown to promote CLCP1 endocytosis, and their
interaction is a potential target for therapeutic
intervention of metastasis.
Length = 85
Score = 28.9 bits (65), Expect = 1.3
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 144 GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSS----TVALMAAFGVEVP 190
G + + DG + + S + C S L+A++ + V
Sbjct: 33 GTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV 83
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 31.4 bits (72), Expect = 1.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 163 TGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIA 195
S SSS A VC ++ALM A VP K +A
Sbjct: 430 LESNGSSSMASVCGGSLALMDA---GVPIKAPVA 460
>gnl|CDD|223244 COG0166, Pgi, Glucose-6-phosphate isomerase [Carbohydrate
transport and metabolism].
Length = 446
Score = 30.7 bits (70), Expect = 2.0
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 61 GEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKV 95
G I+ EG +VL A+R + + K A+ V
Sbjct: 40 GAKINTEGRAVLHTALRMPEVDEVLKRMKAFADDV 74
>gnl|CDD|237412 PRK13527, PRK13527, glutamine amidotransferase subunit PdxT;
Provisional.
Length = 200
Score = 29.9 bits (68), Expect = 2.2
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 27 EAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRK 86
EAE L+ F VF + P + G V ++ + D +A+ Q ++A
Sbjct: 127 EAEIDLSGLDGPFHAVFIRAP-AITKVGGDVEVLAKLDDR------IVAVEQGNVLATAF 179
Query: 87 H 87
H
Sbjct: 180 H 180
>gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain,
uncharacterized subfamily 2. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 247
Score = 29.7 bits (67), Expect = 3.2
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 78 QDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFY 137
+ V + KE EK I+ + YN + ++ + +
Sbjct: 123 EVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNG-----DRFFASDVSNAGSEI 177
Query: 138 EYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 192
+ + + P L DG SG S S V + +AL+ F KK
Sbjct: 178 NSYGRRKVLIVAPGSNYNLPDGKDDFVSGTSFSAPLV-TGIIALLLEFYDRQYKK 231
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 29.2 bits (66), Expect = 4.2
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 282 KLGMKPQEAISKVKTLS-DVEGLCVAFACKNGS-SDPVFAVKEFLRKEPYTALDIEKITE 339
+L + +EAI K + + + GL + A G + V AV++ L E I E
Sbjct: 114 RLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDE 173
Query: 340 EKLTS 344
E ++S
Sbjct: 174 ELISS 178
>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain. This
domain has been shown to be part of the PUA superfamily.
Length = 191
Score = 28.9 bits (65), Expect = 5.1
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 318 FAVKEFLRKEPYTALDIEKITEEKLTSIF----ANSSSSLDVLNAAKQYKLHQRAAHVYS 373
F + E ++EPY ++E + EE+L + A ++ + L
Sbjct: 87 FRILELEQEEPYLVAEVEDLPEEELEELLEALEALVKELIEKIKELLPLLLPLELLLKID 146
Query: 374 EAKRVHAFKDTVSSNL--SEEDKLK 396
+ + D ++S L S E+K +
Sbjct: 147 DIEDPGRLADLIASLLPLSPEEKQE 171
>gnl|CDD|237956 PRK15398, PRK15398, aldehyde dehydrogenase EutE; Provisional.
Length = 465
Score = 29.5 bits (67), Expect = 5.2
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 63 HIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIA-------NVSDKY 105
+ + Y +A+RQ I AIR+ AE++ ++A V DK
Sbjct: 46 KVAQQRYQQKSLAMRQRIIDAIREALLPHAEELAELAVEETGMGRVEDKI 95
>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase.
Members of this family of GHMP kinases were previously
designated as conserved hypothetical protein YchB or as
isopentenyl monophosphate kinase. It is now known, in
tomato and E. coli, to encode
4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an
enzyme of the deoxyxylulose phosphate pathway of
terpenoid biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 294
Score = 29.0 bits (65), Expect = 5.4
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 418 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 475
E+ + +N G R++G+ G CV AL +++ +L ++ + +G
Sbjct: 229 TEVAQALNWLLEYGLAPERMSGS--GPCVFALFDMESEAEQVLEQAPEWLNGFVAKGY 284
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular,
Gram-positive. Pullulan is an unusual, industrially
important polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to
limit degradation by phosphorylase. Characterized
members of this family include a surface-located
pullulanase from Streptococcus pneumoniae
(PMID:11083842) and an extracellular bifunctional
amylase/pullulanase with C-terminal pullulanase activity
(PMID:8798645).
Length = 1111
Score = 29.4 bits (66), Expect = 5.6
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 14 SLKAVYGEGLQLEEAERRF-----DNLNSKFIQVFAQPPDVYARCPGRV-NLIGEHIDYE 67
LK+ + E + F N+ F + AQP + A PG V I H +
Sbjct: 708 ELKSGFPN-----EGQPAFITGGARNVQGIFKNIKAQPHNFEADSPGDVVQYIAAHDNLT 762
Query: 68 GYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANV 101
+ V+ +I++D VA + +E + +++ N+
Sbjct: 763 LHDVIAQSIKKDPKVA---ENQEEIHRRIRLGNL 793
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 28.9 bits (66), Expect = 5.8
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 322 EFLRKE-PY-TALDIEKITEEKLTSIFAN 348
L E PY A++IEK E L I A
Sbjct: 201 RLLGDELPYSVAVEIEKFEERGLVRIEAT 229
>gnl|CDD|219231 pfam06930, DUF1282, Protein of unknown function (DUF1282). This
family consists of several hypothetical proteins of
around 200 residues in length. The function of this
family is unknown although a number of family members
are thought to be putative membrane proteins.
Length = 170
Score = 28.4 bits (64), Expect = 6.4
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 22/109 (20%)
Query: 107 MCTYPAEPDQEIDMKHHQWGHYF--------ICGYKAFYEYVKAKGLDVGPPVGLDILVD 158
+ T P++ +EI +H G + + F G +
Sbjct: 1 LLTSPSDEFEEIKTRHETVGALYLVVILLIALIPLVYFVYSTLQLGWFIFNG------QA 54
Query: 159 GTVPTGSGLSSSTAFVCSSTVALMAA--------FGVEVPKKEIAQLTC 199
G + S L + A + V ++A FG + KE+
Sbjct: 55 GKLTLASALIIAVAGYLAGGVFVLAYLIKLMGRTFGGDGSYKEVLAFAA 103
>gnl|CDD|222027 pfam13288, DXPR_C, DXP reductoisomerase C-terminal domain. This is
the C-terminal domain of the
1-deoxy-D-xylulose-5-phosphate reductoisomerase enzyme.
This domain forms a left handed super-helix.
Length = 118
Score = 27.8 bits (63), Expect = 6.7
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 308 ACKNGSSDPVF-------AVKEFLRKE-PYTALDIEKITEEKLTSIFANSSSSL-DVLNA 358
A + G + P AV FL + + LDI +I E+ L + SL D+L A
Sbjct: 53 ALRAGGTAPAVLNAANEVAVAAFLEGKIGF--LDIARIVEKVLDAHEPIEPPSLEDILEA 110
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 28.3 bits (64), Expect = 7.8
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 303 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTS 344
L +A G + V AVK R L E I EE +
Sbjct: 116 LNIAL-NYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEK 156
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function
unknown].
Length = 189
Score = 28.2 bits (63), Expect = 7.8
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 24 QLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMA 75
LEEA R N + Y +NLI HID E + P A
Sbjct: 99 DLEEAYERLKNGDEDSKDDVIDYAVAY------LNLIKRHIDKEDNVLFPFA 144
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2.
Members of the HesA/MoeB/ThiF family of proteins
(pfam00899) include a number of members encoded in the
midst of thiamine biosynthetic operons. This mix of
known and putative ThiF proteins shows a deep split in
phylogenetic trees, with one the E. coli ThiF and the E.
coli MoeB proteins seemingly more closely related than
E. coli ThiF and Campylobacter (for example) ThiF. This
model represents the divergent clade of putative ThiF
proteins such found in Campylobacter [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 200
Score = 28.3 bits (63), Expect = 8.0
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 318 FAVKEFLRK-EPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAH-VYS 373
A+KE + + PYT ++ EKITEE + F ++ + + A+ + A Y
Sbjct: 77 EALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK 136
Query: 374 EAKRVHA--FKDTVSSNLSEEDKLKK----LGDLMNDSHHSCSVLYECSCPELEELVNVC 427
+ + A +N + K+ K GD +D+ ++ P V +C
Sbjct: 137 DKYLIAASGLAGYDDANSIKTRKISKHFYLCGDGKSDAKQGLGLM----APR----VQIC 188
Query: 428 RNNGAL 433
+ A
Sbjct: 189 AAHQAN 194
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 28.4 bits (63), Expect = 9.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 366 QRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 423
+ AA++ A +R D V+++ E+D L +L D + + S S+L++ + E L
Sbjct: 670 REAANILRVARRRSLCIDDKVNNDEEEDDCLDQLFDTPDLTFGSFSILFDPRSNDPESL 728
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0880 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,036,026
Number of extensions: 2417311
Number of successful extensions: 2194
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2157
Number of HSP's successfully gapped: 71
Length of query: 499
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 398
Effective length of database: 6,457,848
Effective search space: 2570223504
Effective search space used: 2570223504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.0 bits)