RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 010850
(499 letters)
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 155 bits (391), Expect = 5e-45
Identities = 56/220 (25%), Positives = 85/220 (38%), Gaps = 10/220 (4%)
Query: 23 LQLEEAERRFDNLNSKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIV 82
L+ + F + F P++ PGRVNLIGEH DY VLPMA+ T++
Sbjct: 3 LRQPQVAELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVL 62
Query: 83 AIRKHDSKEAEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKA 142
+ + + + ++ +W +Y + +
Sbjct: 63 VGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAA--- 119
Query: 143 KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 202
P G +V +VP G GLSSS + ++ L AQ+ + E
Sbjct: 120 ------PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAE 173
Query: 203 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP 241
F G G MDQ IS+M + G A LID + T+ V L
Sbjct: 174 HSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 139 bits (352), Expect = 2e-39
Identities = 61/210 (29%), Positives = 87/210 (41%), Gaps = 15/210 (7%)
Query: 32 FDNLNSKFIQVFAQPPDV-YARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSK 90
L KF +VF +V Y PGR+NLIGEH DY G V P +I T R + K
Sbjct: 3 LSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDK 62
Query: 91 EAEKVLKIANVSDKYNMCTYPAEPDQEIDMKH-HQWGHYFICGYKAFYEYVKAKGLDVGP 149
K+ S+ + E++ K W +Y
Sbjct: 63 ------KVKLYSENFPKLGVIEFDLDEVEKKDGELWSNYVKGMIVMLKGA------GYEI 110
Query: 150 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQ 208
G ++L+ G +PT SGLSSS + V L F + VP+ E+ QL + E +IG
Sbjct: 111 DKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVN 170
Query: 209 SGGMDQAISIMAKSGFAELIDFNPIRTTDV 238
SG +DQ + A +D N ++ V
Sbjct: 171 SGILDQFAIGFGEVKKAIELDCNTLKYEMV 200
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 133 bits (334), Expect = 3e-37
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 19/191 (9%)
Query: 52 RCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNMCTYP 111
+ PGRVNLIGEH DY V+PMAI TI+ K+D V
Sbjct: 3 KSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYD-----------KVQLYSEHFNEE 51
Query: 112 AEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSST 171
+ K W Y + GL + G +P G+GLSSS
Sbjct: 52 KTFTLDNLTKEGSWIDYVKGVLWVLIQEGY-------KIGGLKGKITGDLPLGAGLSSSA 104
Query: 172 AFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDF 230
+F L + + + + A L + E F+G G +DQ + K +D
Sbjct: 105 SFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNVIFLDT 164
Query: 231 NPIRTTDVQLP 241
++ + P
Sbjct: 165 QTLQYEYIPFP 175
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 117 bits (294), Expect = 1e-31
Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 13/190 (6%)
Query: 45 QPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDK 104
+ + P +V L GEH GY + MAI + + I++ E L N S
Sbjct: 2 RGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLG 61
Query: 105 YNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG 164
N+ + I+ + Y +C K +Y L++ P G I + +P
Sbjct: 62 LNL-----NEIKNINPNNFGDFKYCLCAIKNTLDY-----LNIEPKTGFKINISSKIPIS 111
Query: 165 SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGF 224
GL SS + + A+ + E+ EIA+L E+ I ++ D +
Sbjct: 112 CGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITY---KG 168
Query: 225 AELIDFNPIR 234
I N R
Sbjct: 169 ILEIKNNKFR 178
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 108 bits (270), Expect = 9e-28
Identities = 40/205 (19%), Positives = 61/205 (29%), Gaps = 34/205 (16%)
Query: 49 VYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKE----------------- 91
+ PG+V L GEH G L +A+ T + +R + +
Sbjct: 6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVA 65
Query: 92 --AEKVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGP 149
D E +++ AF A
Sbjct: 66 TLQLLDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRT 125
Query: 150 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV---------------EVPKKEI 194
LDI+V +P G+GL SS A+ AL+ A E K I
Sbjct: 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSI 185
Query: 195 AQLTCECEQFIGTQSGGMDQAISIM 219
+ E E+ I G+D ++S
Sbjct: 186 NKWAYEGERVIHGNPSGVDNSVSTW 210
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 92.4 bits (229), Expect = 2e-22
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 330 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 389
T LDI+ + E AN+ D L +RA H E R +
Sbjct: 36 TRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQ-----KA 83
Query: 390 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVA 448
L K G+L+N SH S YE + EL+ L + G LGAR+TGAG+GGC +A
Sbjct: 84 FVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIA 143
Query: 449 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 496
LV S F + + + + + ++ SG+ K
Sbjct: 144 LVAHDNVSAFRKAVGQVYEEVV---------GYPASFYVAQIGSGSTK 182
Score = 30.4 bits (68), Expect = 0.28
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 246 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 286
V+ ++ S YN R E R + +L ++
Sbjct: 4 IVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDIQ 41
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 91.3 bits (226), Expect = 3e-22
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 364 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 423
+ +++ E RV +D + +E ++K+G ++ +H + Y SC EL+
Sbjct: 54 HRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSCEELDFF 108
Query: 424 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGL 483
V GA GARLTGAG+GG +ALV + + ++
Sbjct: 109 VKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA---------KFSWKA 159
Query: 484 YVFASKPSSGA 494
F KPS G
Sbjct: 160 KYFVVKPSDGV 170
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 85.5 bits (211), Expect = 4e-20
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 353 LDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 412
L+ + +RA HV E +R + + G LM +SH S
Sbjct: 47 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDD 101
Query: 413 YECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 471
YE SCPEL++LV G G+R+TG G+GGC V L++ S + +++E +
Sbjct: 102 YEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYG---- 157
Query: 472 DRGVINNNDLGLYVFASKPSSGA 494
+ S+ + GA
Sbjct: 158 ---------GTATFYLSQAADGA 171
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 78.0 bits (191), Expect = 3e-17
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 24/174 (13%)
Query: 49 VYARCPGRVNLIGEH-IDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKYNM 107
+ + G++ GE+ I G L I I DS +
Sbjct: 2 IAVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDS-------------YRIYS 48
Query: 108 CTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGS-- 165
+ D + + +++ +G ++ P + + G +
Sbjct: 49 DMFDFAVDLRPNPDYSLIQET----IALMGDFLAVRGQNLRP---FSLAIYGKMEREGKK 101
Query: 166 -GLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI 218
GL SS + V AL+A + + V + + +LT G D A
Sbjct: 102 FGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIA 155
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 73.5 bits (180), Expect = 6e-16
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 366 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 425
+ E +RV ++ L +LM+ + H + L++L
Sbjct: 41 TSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQ 95
Query: 426 VCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 466
V +G ++LTGAG GGC + L+K ++ + K+
Sbjct: 96 VTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 61.5 bits (149), Expect = 4e-12
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 333 DIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 392
+ E+ + I + + ++ E +V + L +
Sbjct: 3 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV------IDEALKIK 56
Query: 393 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 452
+ + G LM +H S P+L+ +V++ G GA+LTGAG GGCV+ LV E
Sbjct: 57 N-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFGF-GAKLTGAGGGGCVIILVNE 113
Query: 453 SIDSQFILNLKEQFYQ 468
+ + + L ++ +
Sbjct: 114 EKEKELLKELNKEDVR 129
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 43.5 bits (102), Expect = 7e-06
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 391 EEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 449
E+ K +K+ + + + L + P L +L ++ A A+ +GAG G C +AL
Sbjct: 50 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 108
Query: 450 VKESIDSQFILN 461
++ ++ + N
Sbjct: 109 SFDAQSTKTLKN 120
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 33.4 bits (76), Expect = 0.029
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 2/105 (1%)
Query: 94 KVLKIANVSDKYNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGL 153
+ + EP ID + Q + + E L L
Sbjct: 45 LTSAATAPEFERDTLWLNGEP-HSIDNERTQNCLRDLRQLRKEMESKD-ASLPTLSQWKL 102
Query: 154 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 198
I+ + PT +GL+SS A + A+ + + EI+++
Sbjct: 103 HIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIA 147
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 30.1 bits (67), Expect = 0.29
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 417 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK---EQFYQSRIDR 473
P ++ ++ G ++G+ G ++A KE + L+ E ++ + +
Sbjct: 72 IPNYFKIKEEVKD-KVYGITISGS--GPSIIAFPKEEFIDEVENILRDYYENTIRTEVGK 128
Query: 474 GV 475
GV
Sbjct: 129 GV 130
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 27.6 bits (60), Expect = 2.4
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 105 YNMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLD 154
Y + +M + ++CG K + + + + G+D
Sbjct: 92 YIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGID 141
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 27.2 bits (59), Expect = 3.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 390 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 431
EE K + L DL + + +V++ + ++EEL RN+
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK 51
>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 221
Score = 27.1 bits (59), Expect = 4.1
Identities = 14/129 (10%), Positives = 34/129 (26%), Gaps = 15/129 (11%)
Query: 46 PPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDSKEAEKVLKIANVSDKY 105
+ + + +A + K+ ++K
Sbjct: 97 GTMFDFPDNETLQYVLQQFAE---DGRIIAAVCHGPSGLVNATYKDGTPIVK------GK 147
Query: 106 NMCTYPAEPDQEIDMKHHQWGHYFICGYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGS 165
+ ++ E ++E+ + H +V+ G + DG + TG
Sbjct: 148 TVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVR------GGKWTDFSVRDGNLITGQ 201
Query: 166 GLSSSTAFV 174
SS +
Sbjct: 202 NPQSSRSTA 210
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 26.9 bits (59), Expect = 6.0
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 419 ELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 470
EL+ + ++ G G +V +++D+ FI+ +K +F +++
Sbjct: 44 ELKPISKEGHSSSLFGN-----IKGATIV----DALDTLFIMGMKTEFQEAK 86
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia
ensiformis), Concanavalin B [TaxId: 3823]}
Length = 283
Score = 26.7 bits (58), Expect = 6.3
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 402 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 461
+ C C LE + C+ G L G G +
Sbjct: 48 LELEGV-CGPSVGNPCSFLESQIKECQRMGVK-VFLALGGPKG-TYSACSADYAKDLAEY 104
Query: 462 LKEQFYQSRIDRGVINNNDLGLYVFASKPSS 492
L F R + + G++ KP
Sbjct: 105 LHTYFLSERREGPLGKVALDGIHFDIQKPVD 135
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus
thermophilus [TaxId: 274]}
Length = 344
Score = 26.5 bits (58), Expect = 8.4
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 4/127 (3%)
Query: 21 EGLQLEEAERRFDNLN-SKFIQVFAQPPDVYARCPGRVNLIGEHIDYEGYSVLPMAIRQD 79
GLQ E D + +F + P + + +V
Sbjct: 120 PGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVGEVPLPPYIKAKIPMERYQTVYARRPGSV 179
Query: 80 TIVAIRKHDSKEAEKVLKIANVSDKYNMCTYPA---EPDQEIDMKHHQWGHYFICGYKAF 136
H + E + L+ V ++ P + KH + +
Sbjct: 180 AAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKGDPEKHEMHAEPYAIPEEVA 239
Query: 137 YEYVKAK 143
+AK
Sbjct: 240 EAVNRAK 246
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 25.5 bits (55), Expect = 9.8
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 168 SSSTAFVCSSTVALMAA 184
S + ++++AL A
Sbjct: 130 GSRLVSLMAASLALADA 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.390
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,826,576
Number of extensions: 84990
Number of successful extensions: 267
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 24
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.5 bits)