BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010853
         (499 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
          Length = 1134

 Score = 35.0 bits (79), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI---L 466
           +Y A++ G  R G   E V+ L+ + D+G+TP+++ Y   +   C     ++A  I   L
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ--CMGRQDQDAGTIERCL 224

Query: 467 REMRKNGLNPDAV 479
            +M + GL   A+
Sbjct: 225 EQMSQEGLKLQAL 237


>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Ca
          Length = 501

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 148 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 183
           +V  M+  G+ P L SY   + G C+ G   +AY++
Sbjct: 127 MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162


>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus
 pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus
 pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus
 pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus
 pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus: Nad Complexed Form
 pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus: Nad Complexed Form
 pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus: Nad Complexed Form
 pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
           Dehydrogenase From Lactobacillus Delbrueckii Ssp.
           Bulgaricus: Nad Complexed Form
          Length = 343

 Score = 30.0 bits (66), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 398 DIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447
           D  WPSN+  N +Y   + GL   G I  AV  ++  + + V    V YN
Sbjct: 134 DFTWPSNLISNEIYNLTV-GLIGVGHIGSAVAEIFSAMGAKVIAYDVAYN 182


>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone
           Isomerase At3g55120 (Atchi)
 pdb|4DOI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Chalcone
           Isomerase At3g55120 (Atchi)
          Length = 246

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 15/84 (17%)

Query: 16  FPPVASLTSALAITGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVL---------RT 64
           FPP +S+  AL+ TG + VA+   D +   G  V+ N L    ++  ++         R 
Sbjct: 155 FPPGSSILFALSPTGSLTVAFSKDDSIPETGIAVIENKLLAEAVLESIIGKNGVSPGTRL 214

Query: 65  RDVERANVLMFKLWERMKEEEDLS 88
              ER + LM K     K+E+++S
Sbjct: 215 SVAERLSQLMMK----NKDEKEVS 234


>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana With Mn
 pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
           A. Thaliana, Semet Substituted Form With Sr
          Length = 501

 Score = 28.5 bits (62), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 156 GLTPSLVSYNSIVHGLCKHGGCMRAYQL 183
           G+ P L SY   + G C+ G   +AY++
Sbjct: 135 GIQPRLRSYGPALFGFCRKGDADKAYEV 162


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,833,517
Number of Sequences: 62578
Number of extensions: 604937
Number of successful extensions: 1273
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1256
Number of HSP's gapped (non-prelim): 19
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)