Query 010853
Match_columns 499
No_of_seqs 690 out of 2678
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 05:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.8E-69 1E-73 530.0 58.4 465 17-492 368-861 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.4E-67 5.2E-72 518.0 55.8 459 22-491 412-895 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.3E-65 5.1E-70 513.9 50.6 459 16-493 149-640 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.5E-62 3.3E-67 482.1 52.5 450 20-493 91-543 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.6E-62 5.5E-67 491.9 47.9 448 18-493 224-672 (857)
6 PLN03081 pentatricopeptide (PP 100.0 3.3E-61 7.2E-66 472.7 47.5 438 16-476 120-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-29 4.7E-34 260.1 54.9 451 22-494 437-887 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.4E-29 1.8E-33 255.8 52.8 430 20-470 469-898 (899)
9 PRK11447 cellulose synthase su 99.9 1.1E-21 2.5E-26 203.0 51.1 438 24-476 277-745 (1157)
10 PRK11447 cellulose synthase su 99.9 5.2E-21 1.1E-25 198.1 55.4 451 22-493 118-726 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 2.1E-21 4.5E-26 171.8 34.9 436 19-477 51-488 (966)
12 TIGR00990 3a0801s09 mitochondr 99.9 1.7E-19 3.7E-24 175.5 49.2 424 25-472 136-571 (615)
13 PRK11788 tetratricopeptide rep 99.9 4.5E-21 9.7E-26 177.6 34.3 302 135-479 44-354 (389)
14 PRK15174 Vi polysaccharide exp 99.9 2.1E-19 4.5E-24 174.2 44.2 330 55-400 46-379 (656)
15 PRK11788 tetratricopeptide rep 99.9 9.5E-21 2.1E-25 175.4 33.7 309 96-444 40-354 (389)
16 PRK15174 Vi polysaccharide exp 99.9 3.4E-19 7.4E-24 172.8 42.5 334 18-368 44-382 (656)
17 KOG4626 O-linked N-acetylgluco 99.9 4E-20 8.6E-25 163.8 31.2 362 22-404 122-487 (966)
18 PRK10049 pgaA outer membrane p 99.9 2.8E-18 6.1E-23 170.1 48.0 405 17-437 16-456 (765)
19 PRK14574 hmsH outer membrane p 99.9 2.1E-17 4.5E-22 160.7 49.6 445 20-483 36-522 (822)
20 PRK10049 pgaA outer membrane p 99.9 4.3E-18 9.3E-23 168.8 45.6 423 48-488 12-470 (765)
21 TIGR00990 3a0801s09 mitochondr 99.9 9.9E-18 2.2E-22 163.3 47.3 414 55-493 131-557 (615)
22 PRK09782 bacteriophage N4 rece 99.9 4.1E-17 9E-22 162.0 49.9 173 312-493 519-692 (987)
23 KOG2002 TPR-containing nuclear 99.9 1E-17 2.2E-22 156.3 39.8 451 30-493 250-731 (1018)
24 PRK09782 bacteriophage N4 rece 99.9 1.5E-16 3.2E-21 158.2 49.8 220 246-478 491-710 (987)
25 KOG2002 TPR-containing nuclear 99.8 7.5E-17 1.6E-21 150.6 38.9 459 14-485 267-758 (1018)
26 KOG2003 TPR repeat-containing 99.8 5.3E-18 1.1E-22 145.1 26.3 464 19-495 204-711 (840)
27 PRK14574 hmsH outer membrane p 99.8 4.7E-15 1E-19 144.6 47.6 414 19-447 71-521 (822)
28 KOG4422 Uncharacterized conser 99.8 3.4E-15 7.5E-20 127.1 40.3 428 20-474 117-592 (625)
29 KOG4422 Uncharacterized conser 99.8 7.9E-15 1.7E-19 124.9 35.8 363 48-440 204-593 (625)
30 KOG0495 HAT repeat protein [RN 99.8 3.5E-13 7.7E-18 121.1 46.0 455 17-494 377-867 (913)
31 KOG1915 Cell cycle control pro 99.8 3.5E-13 7.7E-18 116.5 40.1 425 27-470 84-583 (677)
32 KOG2076 RNA polymerase III tra 99.7 6.6E-13 1.4E-17 123.9 43.4 433 27-471 150-694 (895)
33 KOG2076 RNA polymerase III tra 99.7 4.5E-13 9.7E-18 124.9 36.4 351 138-493 151-541 (895)
34 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.5E-21 140.0 11.3 262 201-470 13-275 (280)
35 KOG1155 Anaphase-promoting com 99.7 5.2E-12 1.1E-16 109.2 38.8 449 18-491 80-553 (559)
36 KOG0495 HAT repeat protein [RN 99.7 3.3E-11 7.3E-16 108.7 44.4 443 16-471 406-879 (913)
37 PRK10747 putative protoheme IX 99.7 9.6E-13 2.1E-17 120.7 33.3 253 207-471 129-389 (398)
38 PF13429 TPR_15: Tetratricopep 99.7 6.7E-16 1.5E-20 135.3 11.5 259 131-398 13-273 (280)
39 TIGR00540 hemY_coli hemY prote 99.7 5.4E-13 1.2E-17 123.1 30.8 288 139-436 97-398 (409)
40 TIGR00540 hemY_coli hemY prote 99.7 1E-12 2.2E-17 121.3 32.6 292 172-471 95-398 (409)
41 PRK10747 putative protoheme IX 99.7 6.9E-13 1.5E-17 121.6 30.9 283 104-400 97-388 (398)
42 KOG2003 TPR repeat-containing 99.7 2.5E-12 5.5E-17 110.8 31.7 418 25-459 246-710 (840)
43 KOG1915 Cell cycle control pro 99.6 5.3E-11 1.1E-15 103.4 39.5 418 50-485 72-547 (677)
44 KOG0547 Translocase of outer m 99.6 3E-12 6.5E-17 111.4 31.7 410 27-470 126-564 (606)
45 KOG1155 Anaphase-promoting com 99.6 2.6E-11 5.7E-16 104.9 36.3 366 46-434 159-533 (559)
46 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 105.0 31.4 293 174-477 97-395 (400)
47 KOG1173 Anaphase-promoting com 99.6 1.9E-11 4.2E-16 108.4 33.0 286 194-489 242-533 (611)
48 COG2956 Predicted N-acetylgluc 99.6 9.9E-12 2.1E-16 102.5 27.9 224 29-259 48-277 (389)
49 KOG1126 DNA-binding cell divis 99.6 1.2E-12 2.6E-17 118.3 24.5 281 176-473 334-621 (638)
50 COG2956 Predicted N-acetylgluc 99.6 2.4E-11 5.2E-16 100.3 28.7 263 201-471 74-346 (389)
51 COG3071 HemY Uncharacterized e 99.6 2.8E-11 6E-16 103.1 29.5 293 104-436 97-389 (400)
52 KOG1126 DNA-binding cell divis 99.6 3.3E-12 7.2E-17 115.5 24.9 290 141-443 334-626 (638)
53 KOG3785 Uncharacterized conser 99.6 2.7E-10 5.9E-15 95.4 33.9 427 26-482 32-498 (557)
54 KOG2047 mRNA splicing factor [ 99.5 1.4E-08 3.1E-13 92.0 43.2 311 175-493 361-709 (835)
55 KOG4318 Bicoid mRNA stability 99.5 3E-11 6.5E-16 112.7 24.7 82 86-179 20-101 (1088)
56 KOG4318 Bicoid mRNA stability 99.5 9.5E-12 2.1E-16 115.9 21.0 248 184-456 13-284 (1088)
57 KOG1156 N-terminal acetyltrans 99.5 1E-08 2.2E-13 93.0 38.1 427 27-474 18-470 (700)
58 TIGR02521 type_IV_pilW type IV 99.4 1.4E-10 3.1E-15 99.3 25.6 200 266-471 31-231 (234)
59 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.5E-15 99.0 25.8 203 230-437 30-232 (234)
60 PF12569 NARP1: NMDA receptor- 99.4 8.9E-10 1.9E-14 102.1 30.5 290 136-436 14-333 (517)
61 KOG2376 Signal recognition par 99.4 5.7E-08 1.2E-12 87.4 40.0 226 17-262 13-255 (652)
62 PRK12370 invasion protein regu 99.4 2.3E-10 5E-15 109.9 27.3 267 195-473 255-536 (553)
63 KOG1129 TPR repeat-containing 99.4 4.9E-11 1.1E-15 98.6 19.0 235 234-478 226-462 (478)
64 KOG0547 Translocase of outer m 99.4 1.5E-09 3.3E-14 94.9 28.3 401 54-493 118-552 (606)
65 PRK12370 invasion protein regu 99.4 1.9E-10 4.2E-15 110.4 25.1 251 140-403 275-536 (553)
66 KOG2047 mRNA splicing factor [ 99.4 2.3E-07 4.9E-12 84.5 43.6 446 19-485 105-629 (835)
67 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.2E-17 79.2 6.6 49 441-489 1-49 (50)
68 PF13041 PPR_2: PPR repeat fam 99.4 2.2E-12 4.7E-17 79.0 6.4 50 406-455 1-50 (50)
69 KOG4162 Predicted calmodulin-b 99.4 3.3E-08 7.2E-13 91.7 35.8 208 86-295 318-542 (799)
70 KOG1174 Anaphase-promoting com 99.4 1.6E-07 3.5E-12 80.8 37.4 297 174-483 209-510 (564)
71 KOG1129 TPR repeat-containing 99.3 1.9E-10 4.2E-15 95.2 17.9 231 200-438 227-459 (478)
72 KOG3785 Uncharacterized conser 99.3 2.4E-07 5.3E-12 78.1 35.7 395 18-446 58-497 (557)
73 PF12569 NARP1: NMDA receptor- 99.3 4.7E-09 1E-13 97.4 28.1 260 207-476 15-295 (517)
74 KOG1173 Anaphase-promoting com 99.3 3.4E-08 7.5E-13 88.3 31.4 284 160-453 243-532 (611)
75 KOG1174 Anaphase-promoting com 99.3 4E-07 8.6E-12 78.5 35.8 298 132-440 200-503 (564)
76 KOG1156 N-terminal acetyltrans 99.3 2.3E-07 4.9E-12 84.6 36.2 391 61-473 17-435 (700)
77 KOG4162 Predicted calmodulin-b 99.3 2.6E-07 5.7E-12 85.9 36.7 429 28-471 296-782 (799)
78 KOG1840 Kinesin light chain [C 99.3 1.4E-08 3E-13 93.2 28.1 243 197-470 200-477 (508)
79 KOG1840 Kinesin light chain [C 99.3 5.1E-09 1.1E-13 96.0 24.9 187 308-494 247-466 (508)
80 COG3063 PilF Tfp pilus assembl 99.2 3.2E-08 7E-13 78.4 23.8 185 241-430 45-229 (250)
81 PF04733 Coatomer_E: Coatomer 99.2 5.2E-09 1.1E-13 90.4 20.2 223 233-471 37-264 (290)
82 KOG0548 Molecular co-chaperone 99.2 8.4E-07 1.8E-11 79.3 32.0 425 25-482 11-463 (539)
83 COG3063 PilF Tfp pilus assembl 99.2 1.1E-07 2.4E-12 75.5 23.7 209 268-484 37-246 (250)
84 cd05804 StaR_like StaR_like; a 99.1 5E-07 1.1E-11 82.7 32.5 202 268-471 116-335 (355)
85 KOG4340 Uncharacterized conser 99.1 1.4E-07 3E-12 77.7 24.9 351 19-399 13-372 (459)
86 PRK11189 lipoprotein NlpI; Pro 99.1 1.3E-07 2.8E-12 83.2 27.1 218 210-438 40-266 (296)
87 PRK11189 lipoprotein NlpI; Pro 99.1 9.4E-08 2E-12 84.1 25.0 228 244-483 39-275 (296)
88 KOG3616 Selective LIM binding 99.1 5.5E-07 1.2E-11 83.4 29.9 194 167-396 738-931 (1636)
89 cd05804 StaR_like StaR_like; a 99.1 1.3E-06 2.8E-11 80.0 32.0 189 27-224 17-214 (355)
90 PRK04841 transcriptional regul 99.1 3.8E-06 8.2E-11 87.3 38.9 374 97-472 347-760 (903)
91 PF04733 Coatomer_E: Coatomer 99.0 4.8E-08 1E-12 84.5 18.3 222 199-437 38-265 (290)
92 KOG2376 Signal recognition par 99.0 1.8E-05 4E-10 71.8 36.0 387 54-470 15-444 (652)
93 KOG4340 Uncharacterized conser 99.0 1.5E-07 3.2E-12 77.5 19.1 331 127-470 11-373 (459)
94 KOG0985 Vesicle coat protein c 99.0 2.3E-05 5E-10 75.7 34.7 400 27-492 849-1293(1666)
95 PRK04841 transcriptional regul 99.0 1.6E-05 3.4E-10 82.7 37.6 340 99-438 382-761 (903)
96 KOG1914 mRNA cleavage and poly 98.9 3.6E-05 7.8E-10 69.2 35.4 411 48-471 17-500 (656)
97 KOG1125 TPR repeat-containing 98.9 3.1E-07 6.8E-12 82.7 19.8 224 206-435 295-525 (579)
98 KOG3617 WD40 and TPR repeat-co 98.9 6.6E-05 1.4E-09 71.1 35.6 165 27-223 811-994 (1416)
99 KOG0624 dsRNA-activated protei 98.9 2.7E-05 5.9E-10 65.9 33.2 195 203-403 162-371 (504)
100 KOG0624 dsRNA-activated protei 98.8 2.6E-05 5.7E-10 66.0 27.5 318 90-438 37-371 (504)
101 KOG3616 Selective LIM binding 98.8 1.2E-05 2.5E-10 75.0 27.7 193 203-431 739-931 (1636)
102 KOG1070 rRNA processing protei 98.8 3.6E-06 7.9E-11 83.6 25.3 238 226-469 1453-1697(1710)
103 KOG1070 rRNA processing protei 98.8 5.2E-06 1.1E-10 82.5 26.1 242 179-427 1443-1690(1710)
104 KOG1128 Uncharacterized conser 98.8 1.8E-06 4E-11 80.0 21.8 214 200-436 402-615 (777)
105 KOG1128 Uncharacterized conser 98.8 2.8E-06 6.1E-11 78.9 22.6 220 229-471 396-615 (777)
106 KOG3617 WD40 and TPR repeat-co 98.8 5.7E-06 1.2E-10 77.9 24.4 229 101-365 738-994 (1416)
107 PLN02789 farnesyltranstransfer 98.8 1.2E-05 2.6E-10 70.8 25.6 218 245-470 51-300 (320)
108 KOG1127 TPR repeat-containing 98.8 3.1E-05 6.8E-10 74.7 29.1 433 23-470 499-994 (1238)
109 KOG0985 Vesicle coat protein c 98.8 0.00024 5.2E-09 69.0 38.0 395 17-463 950-1374(1666)
110 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.4E-13 55.9 3.7 32 438-469 2-33 (34)
111 KOG1125 TPR repeat-containing 98.7 2.9E-06 6.4E-11 76.6 20.2 254 133-396 292-565 (579)
112 PF12854 PPR_1: PPR repeat 98.7 1.5E-08 3.2E-13 55.4 3.7 32 156-187 2-33 (34)
113 KOG1127 TPR repeat-containing 98.7 6.7E-05 1.4E-09 72.6 29.8 411 27-468 469-909 (1238)
114 PRK10370 formate-dependent nit 98.7 6.3E-06 1.4E-10 67.4 20.3 117 352-471 53-172 (198)
115 PLN02789 farnesyltranstransfer 98.7 3E-05 6.6E-10 68.3 25.3 128 164-295 40-171 (320)
116 KOG3081 Vesicle coat complex C 98.7 5.1E-05 1.1E-09 62.1 24.1 86 348-437 147-236 (299)
117 TIGR03302 OM_YfiO outer membra 98.7 4.4E-06 9.5E-11 71.4 19.3 190 264-472 31-232 (235)
118 COG5010 TadD Flp pilus assembl 98.7 8.4E-06 1.8E-10 66.5 19.3 159 306-469 70-228 (257)
119 PRK14720 transcript cleavage f 98.7 1.1E-05 2.3E-10 79.4 23.1 151 127-313 117-268 (906)
120 TIGR03302 OM_YfiO outer membra 98.6 3.4E-06 7.3E-11 72.1 17.0 187 51-260 33-232 (235)
121 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.8E-10 65.4 18.7 159 270-434 70-228 (257)
122 PRK10370 formate-dependent nit 98.6 1.5E-05 3.2E-10 65.3 19.5 149 273-438 23-174 (198)
123 PRK15179 Vi polysaccharide bio 98.6 1.2E-05 2.6E-10 78.2 21.8 131 51-189 86-216 (694)
124 KOG3081 Vesicle coat complex C 98.6 3.2E-05 6.9E-10 63.2 20.5 237 240-494 17-257 (299)
125 PRK15179 Vi polysaccharide bio 98.6 4.2E-05 9E-10 74.6 24.3 199 281-492 67-269 (694)
126 KOG0548 Molecular co-chaperone 98.6 0.00018 4E-09 64.9 25.9 56 415-471 365-420 (539)
127 PRK14720 transcript cleavage f 98.5 8E-05 1.7E-09 73.5 25.5 58 198-257 118-175 (906)
128 PRK15359 type III secretion sy 98.5 4.5E-06 9.7E-11 64.5 13.6 94 376-471 27-120 (144)
129 TIGR02552 LcrH_SycD type III s 98.5 7E-06 1.5E-10 63.1 14.3 106 373-482 17-122 (135)
130 PRK15359 type III secretion sy 98.5 1.7E-05 3.6E-10 61.3 15.8 106 341-449 27-132 (144)
131 COG4783 Putative Zn-dependent 98.4 0.00054 1.2E-08 61.4 25.4 138 276-437 316-454 (484)
132 KOG3060 Uncharacterized conser 98.4 0.00045 9.7E-09 56.3 21.8 189 245-439 26-222 (289)
133 KOG2053 Mitochondrial inherita 98.4 0.0028 6E-08 61.2 42.2 224 27-263 20-258 (932)
134 KOG3060 Uncharacterized conser 98.4 0.00035 7.5E-09 56.9 20.6 188 174-367 25-220 (289)
135 TIGR02552 LcrH_SycD type III s 98.4 3.2E-05 6.9E-10 59.4 14.5 105 339-447 18-122 (135)
136 TIGR00756 PPR pentatricopeptid 98.3 1.4E-06 3.1E-11 48.6 4.5 33 445-477 2-34 (35)
137 COG4783 Putative Zn-dependent 98.3 0.00056 1.2E-08 61.3 21.9 138 312-472 316-454 (484)
138 PF13812 PPR_3: Pentatricopept 98.3 1.9E-06 4E-11 47.6 4.3 33 444-476 2-34 (34)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.4E-05 1.4E-09 67.6 15.2 123 342-470 173-295 (395)
140 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 6E-11 47.3 4.4 34 410-443 2-35 (35)
141 PF09976 TPR_21: Tetratricopep 98.2 0.0001 2.2E-09 57.2 14.5 126 340-469 14-144 (145)
142 KOG1914 mRNA cleavage and poly 98.2 0.005 1.1E-07 56.1 37.9 432 15-459 15-526 (656)
143 PF13812 PPR_3: Pentatricopept 98.2 4.4E-06 9.4E-11 46.1 4.2 33 409-441 2-34 (34)
144 PF09976 TPR_21: Tetratricopep 98.1 0.00022 4.8E-09 55.4 14.9 118 315-434 24-144 (145)
145 PF10037 MRP-S27: Mitochondria 98.1 6.4E-05 1.4E-09 67.9 12.4 122 335-456 63-186 (429)
146 KOG2053 Mitochondrial inherita 98.1 0.013 2.8E-07 56.9 43.4 189 27-228 54-258 (932)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00018 3.9E-09 64.8 14.9 125 268-400 171-295 (395)
148 PF10037 MRP-S27: Mitochondria 98.0 7.2E-05 1.6E-09 67.6 11.9 123 299-421 63-186 (429)
149 KOG2041 WD40 repeat protein [G 98.0 0.013 2.9E-07 55.2 27.0 206 48-292 689-904 (1189)
150 KOG0553 TPR repeat-containing 98.0 0.00037 8.1E-09 58.4 14.6 102 383-488 91-192 (304)
151 PF08579 RPM2: Mitochondrial r 98.0 5E-05 1.1E-09 53.3 8.0 77 131-207 30-115 (120)
152 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.8E-09 51.3 9.4 78 413-490 30-116 (120)
153 PF01535 PPR: PPR repeat; Int 98.0 1.3E-05 2.8E-10 43.0 3.6 29 445-473 2-30 (31)
154 PF05843 Suf: Suppressor of fo 97.9 0.00018 3.9E-09 62.6 12.4 130 304-436 3-135 (280)
155 PF14938 SNAP: Soluble NSF att 97.9 0.0022 4.8E-08 56.2 19.1 56 169-224 122-183 (282)
156 PLN03088 SGT1, suppressor of 97.9 0.00037 8.1E-09 63.1 14.4 92 345-438 9-100 (356)
157 PRK15363 pathogenicity island 97.9 0.00062 1.3E-08 51.9 12.7 92 378-471 40-131 (157)
158 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00067 1.5E-08 50.6 13.3 98 375-472 4-105 (119)
159 PF06239 ECSIT: Evolutionarily 97.9 0.00021 4.5E-09 57.1 10.3 51 370-420 44-99 (228)
160 cd00189 TPR Tetratricopeptide 97.9 0.00037 8.1E-09 49.5 11.2 93 377-471 4-96 (100)
161 PF12895 Apc3: Anaphase-promot 97.9 3.2E-05 7E-10 53.4 5.1 81 386-468 2-83 (84)
162 KOG0550 Molecular chaperone (D 97.8 0.0051 1.1E-07 54.1 19.0 273 135-438 58-351 (486)
163 cd00189 TPR Tetratricopeptide 97.8 0.00039 8.4E-09 49.4 11.1 94 342-437 4-97 (100)
164 PRK02603 photosystem I assembl 97.8 0.0011 2.4E-08 53.2 14.4 87 90-177 34-122 (172)
165 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00061 1.3E-08 50.9 12.1 99 54-155 5-105 (119)
166 PF01535 PPR: PPR repeat; Int 97.8 3E-05 6.5E-10 41.6 3.6 30 410-439 2-31 (31)
167 PRK02603 photosystem I assembl 97.8 0.0016 3.5E-08 52.3 14.9 83 341-424 38-122 (172)
168 PF05843 Suf: Suppressor of fo 97.8 0.0014 3.1E-08 57.1 15.2 131 267-402 2-136 (280)
169 CHL00033 ycf3 photosystem I as 97.8 0.0011 2.4E-08 53.0 13.2 59 342-400 39-99 (168)
170 PLN03088 SGT1, suppressor of 97.7 0.0013 2.8E-08 59.6 14.5 94 308-404 8-101 (356)
171 PRK10153 DNA-binding transcrip 97.7 0.0026 5.7E-08 60.3 16.8 143 335-482 334-490 (517)
172 PF14938 SNAP: Soluble NSF att 97.7 0.0076 1.6E-07 52.8 18.6 135 347-486 123-276 (282)
173 CHL00033 ycf3 photosystem I as 97.7 0.0013 2.9E-08 52.5 12.7 115 354-469 15-139 (168)
174 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 50.8 5.4 79 352-432 3-82 (84)
175 PRK15363 pathogenicity island 97.7 0.0014 3.1E-08 49.9 11.5 93 343-437 40-132 (157)
176 COG4235 Cytochrome c biogenesi 97.6 0.0049 1.1E-07 52.2 15.2 112 370-485 153-267 (287)
177 PF14559 TPR_19: Tetratricopep 97.6 0.00024 5.3E-09 46.7 6.1 63 419-484 2-64 (68)
178 PF07079 DUF1347: Protein of u 97.6 0.05 1.1E-06 48.8 37.5 433 26-484 16-531 (549)
179 PRK10866 outer membrane biogen 97.5 0.025 5.3E-07 48.1 18.6 55 27-83 43-101 (243)
180 PF13432 TPR_16: Tetratricopep 97.5 0.00046 1E-08 44.8 6.6 55 416-471 5-59 (65)
181 PRK10866 outer membrane biogen 97.5 0.012 2.5E-07 50.1 16.5 56 238-293 182-239 (243)
182 PF06239 ECSIT: Evolutionarily 97.5 0.0007 1.5E-08 54.2 8.4 102 90-210 46-152 (228)
183 KOG0553 TPR repeat-containing 97.5 0.0022 4.7E-08 54.0 11.5 98 311-413 90-187 (304)
184 KOG2041 WD40 repeat protein [G 97.5 0.059 1.3E-06 51.1 21.5 92 160-260 851-952 (1189)
185 PF13414 TPR_11: TPR repeat; P 97.5 0.00065 1.4E-08 44.8 7.0 64 407-471 2-66 (69)
186 COG4700 Uncharacterized protei 97.5 0.025 5.5E-07 44.1 15.7 100 336-437 87-189 (251)
187 PRK10153 DNA-binding transcrip 97.4 0.016 3.4E-07 55.2 17.9 66 371-438 418-483 (517)
188 PF13432 TPR_16: Tetratricopep 97.4 0.0011 2.3E-08 43.1 7.3 58 379-437 3-60 (65)
189 PF12688 TPR_5: Tetratrico pep 97.4 0.011 2.5E-07 43.4 13.3 91 239-329 9-102 (120)
190 KOG2796 Uncharacterized conser 97.4 0.016 3.5E-07 47.8 14.6 144 303-450 178-326 (366)
191 PF03704 BTAD: Bacterial trans 97.4 0.025 5.5E-07 43.9 15.8 73 410-483 64-141 (146)
192 COG4700 Uncharacterized protei 97.4 0.044 9.6E-07 42.8 18.1 102 299-401 86-188 (251)
193 COG4235 Cytochrome c biogenesi 97.4 0.019 4.1E-07 48.8 15.4 102 335-438 153-257 (287)
194 KOG2114 Vacuolar assembly/sort 97.3 0.17 3.7E-06 49.2 23.3 179 18-222 336-516 (933)
195 PF12688 TPR_5: Tetratrico pep 97.3 0.0083 1.8E-07 44.1 11.8 92 23-117 8-101 (120)
196 PF14559 TPR_19: Tetratricopep 97.3 0.00082 1.8E-08 44.1 5.7 51 386-437 4-54 (68)
197 PF13525 YfiO: Outer membrane 97.3 0.018 4E-07 47.5 14.7 23 202-224 147-169 (203)
198 KOG1130 Predicted G-alpha GTPa 97.3 0.0034 7.4E-08 55.1 10.5 133 339-471 196-343 (639)
199 PF13414 TPR_11: TPR repeat; P 97.3 0.0015 3.3E-08 43.0 6.7 65 372-437 2-67 (69)
200 PF04840 Vps16_C: Vps16, C-ter 97.2 0.13 2.8E-06 45.6 28.0 106 340-465 179-284 (319)
201 KOG1538 Uncharacterized conser 97.2 0.099 2.2E-06 49.2 19.5 88 373-471 747-845 (1081)
202 KOG1538 Uncharacterized conser 97.2 0.079 1.7E-06 49.8 18.6 36 148-186 622-657 (1081)
203 PF13281 DUF4071: Domain of un 97.2 0.1 2.2E-06 46.7 18.7 179 91-295 141-334 (374)
204 PRK10803 tol-pal system protei 97.2 0.0056 1.2E-07 52.4 10.8 90 27-121 154-247 (263)
205 KOG2796 Uncharacterized conser 97.2 0.023 5E-07 47.0 13.3 161 27-202 159-325 (366)
206 PF13371 TPR_9: Tetratricopept 97.1 0.0046 1E-07 41.2 8.1 63 416-481 3-65 (73)
207 PRK10803 tol-pal system protei 97.1 0.013 2.8E-07 50.2 12.5 96 376-471 146-245 (263)
208 PF13424 TPR_12: Tetratricopep 97.1 0.002 4.4E-08 43.6 6.2 67 51-117 5-72 (78)
209 PF07079 DUF1347: Protein of u 97.1 0.2 4.3E-06 45.2 36.9 392 27-449 90-531 (549)
210 KOG0550 Molecular chaperone (D 97.1 0.19 4.1E-06 44.8 21.2 92 311-403 258-351 (486)
211 KOG2280 Vacuolar assembly/sort 97.0 0.34 7.3E-06 46.7 26.1 118 332-468 678-795 (829)
212 PF13525 YfiO: Outer membrane 97.0 0.06 1.3E-06 44.5 15.2 168 25-216 14-198 (203)
213 PRK15331 chaperone protein Sic 97.0 0.097 2.1E-06 40.5 14.8 87 383-471 47-133 (165)
214 COG3898 Uncharacterized membra 96.9 0.25 5.5E-06 43.6 31.2 289 174-476 97-396 (531)
215 COG1729 Uncharacterized protei 96.9 0.038 8.1E-07 46.4 12.7 100 20-122 143-246 (262)
216 KOG2280 Vacuolar assembly/sort 96.9 0.47 1E-05 45.8 26.5 108 304-431 686-793 (829)
217 PF12921 ATP13: Mitochondrial 96.9 0.024 5.1E-07 42.2 10.3 80 267-346 3-96 (126)
218 KOG1130 Predicted G-alpha GTPa 96.8 0.013 2.9E-07 51.6 9.8 265 25-293 26-342 (639)
219 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.39 8.5E-06 43.4 33.5 148 338-491 397-548 (660)
220 KOG3941 Intermediate in Toll s 96.8 0.015 3.2E-07 48.6 9.2 51 370-420 64-119 (406)
221 PF12921 ATP13: Mitochondrial 96.8 0.042 9.2E-07 40.9 10.9 80 372-451 1-96 (126)
222 PF04840 Vps16_C: Vps16, C-ter 96.7 0.37 8.1E-06 42.8 30.5 20 54-73 3-22 (319)
223 COG3118 Thioredoxin domain-con 96.7 0.26 5.6E-06 42.0 16.2 144 59-211 142-287 (304)
224 PF03704 BTAD: Bacterial trans 96.6 0.014 3E-07 45.4 8.1 65 27-92 73-137 (146)
225 PF13424 TPR_12: Tetratricopep 96.6 0.0087 1.9E-07 40.5 6.0 61 410-470 7-73 (78)
226 PF13371 TPR_9: Tetratricopept 96.5 0.013 2.7E-07 39.0 6.3 49 277-327 6-54 (73)
227 COG3898 Uncharacterized membra 96.5 0.59 1.3E-05 41.5 26.9 279 199-493 85-378 (531)
228 KOG0543 FKBP-type peptidyl-pro 96.4 0.042 9.1E-07 48.7 10.5 99 56-155 213-320 (397)
229 PF13281 DUF4071: Domain of un 96.4 0.68 1.5E-05 41.7 19.4 78 270-348 145-227 (374)
230 PRK15331 chaperone protein Sic 96.4 0.084 1.8E-06 40.8 10.6 87 348-436 47-133 (165)
231 PF13170 DUF4003: Protein of u 96.3 0.49 1.1E-05 41.5 16.4 61 143-203 160-224 (297)
232 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.07 1.5E-06 48.5 11.1 102 370-475 72-177 (453)
233 PF09205 DUF1955: Domain of un 96.2 0.31 6.7E-06 35.9 13.1 64 376-440 89-152 (161)
234 PF09205 DUF1955: Domain of un 96.2 0.32 6.9E-06 35.8 14.4 139 314-475 14-152 (161)
235 PF10300 DUF3808: Protein of u 96.2 0.53 1.2E-05 44.6 17.3 117 351-470 246-374 (468)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.14 3E-06 46.7 12.6 66 335-402 72-141 (453)
237 PF04053 Coatomer_WDAD: Coatom 96.2 0.23 5.1E-06 46.3 14.6 129 269-432 298-426 (443)
238 KOG1585 Protein required for f 96.1 0.63 1.4E-05 38.5 16.4 87 53-154 33-119 (308)
239 COG3118 Thioredoxin domain-con 96.1 0.76 1.6E-05 39.3 15.5 49 301-349 235-283 (304)
240 PF04053 Coatomer_WDAD: Coatom 96.0 0.11 2.4E-06 48.4 11.8 130 128-290 297-426 (443)
241 COG1729 Uncharacterized protei 96.0 0.069 1.5E-06 44.9 9.3 87 103-189 153-243 (262)
242 PRK11906 transcriptional regul 96.0 0.36 7.9E-06 44.2 14.2 149 317-468 273-432 (458)
243 KOG0543 FKBP-type peptidyl-pro 96.0 0.18 3.9E-06 44.9 11.9 62 340-402 259-320 (397)
244 PF13512 TPR_18: Tetratricopep 96.0 0.18 3.8E-06 38.1 10.3 56 27-82 21-78 (142)
245 KOG1941 Acetylcholine receptor 95.9 0.34 7.4E-06 42.4 13.0 231 26-256 16-271 (518)
246 PF08631 SPO22: Meiosis protei 95.9 1.1 2.4E-05 39.2 23.4 61 163-224 86-149 (278)
247 COG3629 DnrI DNA-binding trans 95.6 0.23 5.1E-06 42.5 11.1 76 411-487 156-236 (280)
248 KOG2610 Uncharacterized conser 95.6 0.47 1E-05 41.1 12.6 154 277-435 114-274 (491)
249 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.8 4E-05 39.3 33.1 116 374-493 398-517 (660)
250 PF13512 TPR_18: Tetratricopep 95.5 0.63 1.4E-05 35.2 11.7 71 349-419 21-93 (142)
251 PF10345 Cohesin_load: Cohesin 95.5 3 6.4E-05 41.4 38.1 187 34-222 39-251 (608)
252 KOG2114 Vacuolar assembly/sort 95.4 3.1 6.7E-05 41.2 23.1 179 53-257 336-516 (933)
253 PRK11906 transcriptional regul 95.4 2.1 4.6E-05 39.4 16.8 150 281-434 273-433 (458)
254 COG4105 ComL DNA uptake lipopr 95.4 1.4 3E-05 37.0 17.9 54 102-155 45-100 (254)
255 KOG2610 Uncharacterized conser 95.2 0.83 1.8E-05 39.7 12.9 154 242-400 114-274 (491)
256 KOG3941 Intermediate in Toll s 95.1 0.22 4.7E-06 42.0 9.0 106 335-459 64-174 (406)
257 KOG1258 mRNA processing protei 95.1 3.1 6.8E-05 39.4 33.3 92 97-189 85-179 (577)
258 smart00299 CLH Clathrin heavy 95.0 1.2 2.6E-05 34.2 16.0 84 201-292 12-95 (140)
259 smart00299 CLH Clathrin heavy 95.0 1.2 2.6E-05 34.2 15.8 125 270-419 11-136 (140)
260 PF13170 DUF4003: Protein of u 95.0 2.3 5.1E-05 37.4 18.1 128 144-273 80-224 (297)
261 PF13428 TPR_14: Tetratricopep 94.9 0.12 2.6E-06 30.1 5.3 26 412-437 5-30 (44)
262 KOG1941 Acetylcholine receptor 94.8 0.98 2.1E-05 39.7 12.4 229 207-435 17-273 (518)
263 COG3629 DnrI DNA-binding trans 94.8 0.42 9.1E-06 41.0 10.1 78 374-452 154-236 (280)
264 PF04184 ST7: ST7 protein; In 94.8 1.8 3.9E-05 40.1 14.4 64 373-436 259-323 (539)
265 COG2909 MalT ATP-dependent tra 94.8 3.7 8E-05 41.0 17.4 197 27-224 426-646 (894)
266 COG4105 ComL DNA uptake lipopr 94.6 2.3 5.1E-05 35.7 18.9 187 14-223 30-231 (254)
267 PF08631 SPO22: Meiosis protei 94.6 2.8 6.2E-05 36.7 24.5 62 198-260 86-150 (278)
268 PF13428 TPR_14: Tetratricopep 94.6 0.12 2.7E-06 30.0 4.8 30 375-404 3-32 (44)
269 PF10300 DUF3808: Protein of u 94.6 4.3 9.4E-05 38.6 24.2 164 233-400 190-374 (468)
270 KOG4555 TPR repeat-containing 94.4 0.9 1.9E-05 33.5 9.5 45 27-72 54-98 (175)
271 PF09613 HrpB1_HrpK: Bacterial 94.3 1.9 4.2E-05 33.4 13.9 51 349-401 21-72 (160)
272 PF13929 mRNA_stabil: mRNA sta 94.3 1.9 4.1E-05 37.0 12.6 62 124-185 200-262 (292)
273 PF04184 ST7: ST7 protein; In 94.1 5 0.00011 37.4 19.3 79 231-309 259-338 (539)
274 PF10602 RPN7: 26S proteasome 93.8 1.1 2.3E-05 36.0 10.2 58 22-79 42-101 (177)
275 KOG4555 TPR repeat-containing 93.7 1.5 3.2E-05 32.4 9.4 92 275-368 52-145 (175)
276 KOG1550 Extracellular protein 93.5 7.2 0.00016 38.2 17.0 82 353-438 308-394 (552)
277 KOG1585 Protein required for f 93.3 4.3 9.2E-05 33.9 16.0 205 199-431 34-250 (308)
278 PF13176 TPR_7: Tetratricopept 93.2 0.27 5.8E-06 27.0 4.2 23 411-433 2-24 (36)
279 PF07035 Mic1: Colon cancer-as 93.1 3.5 7.5E-05 32.5 13.3 129 329-471 20-148 (167)
280 PF10602 RPN7: 26S proteasome 93.1 1.6 3.4E-05 35.1 10.1 94 375-470 38-140 (177)
281 COG2909 MalT ATP-dependent tra 93.1 11 0.00023 38.0 28.5 227 172-399 426-685 (894)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 92.9 0.98 2.1E-05 31.2 7.1 44 427-470 26-69 (103)
283 PF13176 TPR_7: Tetratricopept 92.7 0.31 6.8E-06 26.8 4.0 26 445-470 1-26 (36)
284 PF02284 COX5A: Cytochrome c o 92.7 2.5 5.3E-05 29.7 8.9 42 429-470 31-72 (108)
285 COG0457 NrfG FOG: TPR repeat [ 92.6 5.5 0.00012 33.4 29.0 203 266-471 59-264 (291)
286 COG1747 Uncharacterized N-term 92.3 9.7 0.00021 35.6 23.0 180 194-381 64-247 (711)
287 PF02259 FAT: FAT domain; Int 92.3 8.8 0.00019 35.0 21.5 56 24-83 6-61 (352)
288 KOG1464 COP9 signalosome, subu 92.3 6.4 0.00014 33.3 23.3 173 14-188 21-218 (440)
289 PF11207 DUF2989: Protein of u 92.1 1.8 3.8E-05 35.0 8.8 42 104-145 153-197 (203)
290 PF13431 TPR_17: Tetratricopep 92.0 0.2 4.3E-06 27.1 2.6 21 407-427 12-32 (34)
291 PF07035 Mic1: Colon cancer-as 91.9 5.2 0.00011 31.5 14.9 36 37-72 15-50 (167)
292 COG4649 Uncharacterized protei 91.9 5.2 0.00011 31.4 14.1 19 243-261 70-88 (221)
293 KOG0276 Vesicle coat complex C 91.8 2.3 5.1E-05 40.2 10.5 150 103-292 598-747 (794)
294 PF04097 Nic96: Nup93/Nic96; 91.8 15 0.00032 36.6 19.4 86 237-327 264-352 (613)
295 PF11207 DUF2989: Protein of u 91.7 6.1 0.00013 32.0 11.5 72 143-215 123-197 (203)
296 PF00515 TPR_1: Tetratricopept 91.6 0.48 1E-05 25.4 3.9 27 410-436 3-29 (34)
297 COG4649 Uncharacterized protei 91.3 6 0.00013 31.1 15.3 51 173-223 70-121 (221)
298 PF13431 TPR_17: Tetratricopep 91.2 0.29 6.3E-06 26.5 2.7 32 431-463 2-33 (34)
299 KOG4570 Uncharacterized conser 91.0 3.4 7.4E-05 35.8 9.8 48 353-400 115-162 (418)
300 COG4785 NlpI Lipoprotein NlpI, 90.7 8.2 0.00018 31.6 11.2 65 231-296 99-163 (297)
301 KOG4234 TPR repeat-containing 90.6 1.7 3.7E-05 34.8 7.3 95 59-155 103-197 (271)
302 KOG4570 Uncharacterized conser 90.4 6.9 0.00015 34.0 11.1 105 261-368 59-165 (418)
303 PF07719 TPR_2: Tetratricopept 90.1 0.79 1.7E-05 24.4 3.9 26 411-436 4-29 (34)
304 KOG0890 Protein kinase of the 90.0 40 0.00087 38.5 24.4 325 56-401 1388-1730(2382)
305 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 3.3 7.1E-05 28.8 7.3 44 392-435 26-69 (103)
306 PF00515 TPR_1: Tetratricopept 90.0 1.2 2.6E-05 23.8 4.6 27 445-471 3-29 (34)
307 KOG0276 Vesicle coat complex C 89.9 2.5 5.5E-05 40.0 8.9 130 94-256 617-746 (794)
308 COG0457 NrfG FOG: TPR repeat [ 89.8 11 0.00023 31.6 27.4 200 233-437 61-265 (291)
309 PF02284 COX5A: Cytochrome c o 89.8 5.4 0.00012 28.1 8.7 60 109-169 28-87 (108)
310 PF13929 mRNA_stabil: mRNA sta 89.7 13 0.00027 32.3 16.4 58 371-428 200-258 (292)
311 PF09613 HrpB1_HrpK: Bacterial 89.1 9.1 0.0002 29.8 12.3 19 418-436 54-72 (160)
312 PF07163 Pex26: Pex26 protein; 88.8 5.6 0.00012 33.9 9.4 88 202-289 89-181 (309)
313 KOG4234 TPR repeat-containing 88.8 7.5 0.00016 31.4 9.5 92 346-438 103-198 (271)
314 COG3947 Response regulator con 88.6 15 0.00033 31.7 12.0 59 95-154 283-341 (361)
315 PF07719 TPR_2: Tetratricopept 88.4 1.8 3.9E-05 23.0 4.6 27 445-471 3-29 (34)
316 PF13374 TPR_10: Tetratricopep 88.1 1.6 3.4E-05 24.6 4.5 26 410-435 4-29 (42)
317 PF06552 TOM20_plant: Plant sp 88.1 4.1 8.8E-05 32.3 7.7 127 32-191 7-137 (186)
318 PF13374 TPR_10: Tetratricopep 88.0 1.5 3.2E-05 24.8 4.3 30 52-81 3-32 (42)
319 PF00637 Clathrin: Region in C 88.0 0.23 5E-06 38.3 1.0 130 343-494 12-141 (143)
320 TIGR02561 HrpB1_HrpK type III 87.9 10 0.00023 29.0 11.4 52 350-403 22-74 (153)
321 KOG1464 COP9 signalosome, subu 87.1 18 0.00038 30.8 16.0 62 268-329 193-258 (440)
322 KOG1586 Protein required for f 87.1 16 0.00036 30.4 18.7 22 204-225 162-183 (288)
323 COG4455 ImpE Protein of avirul 87.1 5.3 0.00011 32.7 7.9 77 375-452 3-81 (273)
324 KOG1920 IkappaB kinase complex 86.5 47 0.001 35.0 23.2 82 308-400 945-1026(1265)
325 COG4455 ImpE Protein of avirul 86.3 4.2 9.1E-05 33.3 7.0 58 97-155 7-64 (273)
326 KOG4077 Cytochrome c oxidase, 85.6 4.1 8.9E-05 29.9 6.0 40 431-470 72-111 (149)
327 KOG1258 mRNA processing protei 85.6 36 0.00077 32.8 34.6 408 18-457 44-489 (577)
328 KOG2297 Predicted translation 85.4 24 0.00052 30.7 15.9 20 409-428 322-341 (412)
329 PF13174 TPR_6: Tetratricopept 85.3 1.6 3.5E-05 22.9 3.3 27 56-82 5-31 (33)
330 COG3947 Response regulator con 84.9 25 0.00054 30.5 15.8 169 33-223 150-340 (361)
331 KOG4648 Uncharacterized conser 84.7 3.6 7.9E-05 36.0 6.4 91 273-367 104-194 (536)
332 PF11848 DUF3368: Domain of un 84.5 4.9 0.00011 23.8 5.2 35 453-487 12-46 (48)
333 COG2976 Uncharacterized protei 84.5 20 0.00043 29.0 12.2 57 97-155 132-188 (207)
334 PF13181 TPR_8: Tetratricopept 84.4 3.7 7.9E-05 21.8 4.4 27 410-436 3-29 (34)
335 PF13181 TPR_8: Tetratricopept 84.3 1.9 4.2E-05 22.9 3.2 28 444-471 2-29 (34)
336 PF07721 TPR_4: Tetratricopept 83.9 2 4.4E-05 21.3 2.9 18 97-114 7-24 (26)
337 PF00637 Clathrin: Region in C 83.6 0.82 1.8E-05 35.2 2.1 83 132-221 13-95 (143)
338 PF13762 MNE1: Mitochondrial s 83.5 18 0.00039 27.7 10.3 50 160-209 78-128 (145)
339 PF11663 Toxin_YhaV: Toxin wit 83.3 1.5 3.3E-05 32.5 3.2 35 25-61 104-138 (140)
340 TIGR03504 FimV_Cterm FimV C-te 83.0 3.3 7.2E-05 24.0 3.9 23 414-436 5-27 (44)
341 PF13174 TPR_6: Tetratricopept 83.0 2.9 6.3E-05 21.9 3.6 23 414-436 6-28 (33)
342 PF06552 TOM20_plant: Plant sp 82.8 22 0.00048 28.3 10.3 27 425-453 97-123 (186)
343 TIGR02561 HrpB1_HrpK type III 82.7 20 0.00043 27.6 11.2 54 313-368 21-74 (153)
344 KOG1920 IkappaB kinase complex 82.6 70 0.0015 33.9 24.5 80 345-436 946-1027(1265)
345 KOG0890 Protein kinase of the 82.6 1E+02 0.0022 35.6 24.7 325 96-438 1388-1732(2382)
346 PF08424 NRDE-2: NRDE-2, neces 82.1 38 0.00083 30.5 16.8 13 299-311 16-28 (321)
347 PF07575 Nucleopor_Nup85: Nup8 81.8 57 0.0012 32.3 16.9 31 456-486 508-538 (566)
348 PRK09687 putative lyase; Provi 81.7 36 0.00077 29.9 25.7 59 300-366 204-262 (280)
349 TIGR03504 FimV_Cterm FimV C-te 81.6 3.5 7.6E-05 23.9 3.6 23 202-224 5-27 (44)
350 COG4785 NlpI Lipoprotein NlpI, 81.0 30 0.00065 28.6 16.5 161 266-438 99-267 (297)
351 KOG4648 Uncharacterized conser 80.9 12 0.00026 33.1 8.0 55 345-400 104-158 (536)
352 KOG2066 Vacuolar assembly/sort 80.9 65 0.0014 32.3 26.3 105 97-208 362-467 (846)
353 PF10345 Cohesin_load: Cohesin 80.5 66 0.0014 32.2 37.2 167 20-188 63-252 (608)
354 PF10579 Rapsyn_N: Rapsyn N-te 79.1 8.2 0.00018 25.7 5.1 46 420-465 18-65 (80)
355 KOG4521 Nuclear pore complex, 78.9 93 0.002 33.0 14.3 155 26-184 930-1125(1480)
356 PF12862 Apc5: Anaphase-promot 78.4 11 0.00023 26.5 6.1 57 61-117 8-67 (94)
357 PF10579 Rapsyn_N: Rapsyn N-te 78.0 8.7 0.00019 25.6 5.0 47 385-431 18-66 (80)
358 KOG4507 Uncharacterized conser 77.9 57 0.0012 31.5 11.8 101 348-450 617-717 (886)
359 KOG1550 Extracellular protein 77.9 75 0.0016 31.3 22.5 78 353-438 454-539 (552)
360 PF07163 Pex26: Pex26 protein; 76.7 49 0.0011 28.6 12.6 21 133-153 125-145 (309)
361 PF14853 Fis1_TPR_C: Fis1 C-te 76.7 4.1 8.9E-05 24.8 3.1 33 451-485 9-41 (53)
362 KOG1498 26S proteasome regulat 76.6 60 0.0013 29.6 16.1 49 64-112 25-73 (439)
363 PF11817 Foie-gras_1: Foie gra 75.8 18 0.00039 31.1 7.9 58 56-113 183-240 (247)
364 PRK15180 Vi polysaccharide bio 74.6 77 0.0017 29.8 30.7 125 58-190 296-420 (831)
365 KOG4077 Cytochrome c oxidase, 73.7 32 0.00069 25.5 7.2 44 393-436 69-112 (149)
366 PRK09687 putative lyase; Provi 72.5 67 0.0015 28.2 26.5 137 301-454 141-278 (280)
367 smart00028 TPR Tetratricopepti 71.6 9 0.00019 19.1 3.6 24 447-470 5-28 (34)
368 PRK15180 Vi polysaccharide bio 71.4 92 0.002 29.3 22.4 86 136-223 333-418 (831)
369 KOG4507 Uncharacterized conser 71.1 96 0.0021 30.1 11.5 163 323-489 556-721 (886)
370 TIGR02508 type_III_yscG type I 70.8 35 0.00075 24.2 8.5 50 382-437 48-97 (115)
371 PF14689 SPOB_a: Sensor_kinase 70.7 15 0.00033 23.2 4.7 26 445-470 25-50 (62)
372 COG2976 Uncharacterized protei 70.6 56 0.0012 26.6 14.2 92 380-473 96-189 (207)
373 TIGR02508 type_III_yscG type I 70.0 36 0.00078 24.1 7.9 51 240-296 48-98 (115)
374 PF04190 DUF410: Protein of un 69.4 76 0.0016 27.5 17.3 26 124-149 88-113 (260)
375 PF08311 Mad3_BUB1_I: Mad3/BUB 69.2 46 0.00099 24.9 8.3 43 144-186 81-124 (126)
376 PRK11619 lytic murein transgly 69.1 1.3E+02 0.0029 30.3 40.4 142 21-178 36-180 (644)
377 PF04097 Nic96: Nup93/Nic96; 68.4 1.4E+02 0.0029 30.1 18.1 224 126-368 112-357 (613)
378 PF11848 DUF3368: Domain of un 68.4 22 0.00048 21.0 4.9 34 418-451 12-45 (48)
379 KOG1498 26S proteasome regulat 68.2 97 0.0021 28.3 15.0 101 234-341 134-251 (439)
380 KOG2300 Uncharacterized conser 68.0 1.1E+02 0.0024 28.9 36.0 432 27-468 18-510 (629)
381 KOG2063 Vacuolar assembly/sort 66.9 1.7E+02 0.0036 30.6 17.5 117 197-314 505-638 (877)
382 PF02259 FAT: FAT domain; Int 66.5 1E+02 0.0022 28.0 26.2 64 338-401 146-212 (352)
383 PF10366 Vps39_1: Vacuolar sor 66.5 47 0.001 24.1 7.3 27 340-366 41-67 (108)
384 KOG2908 26S proteasome regulat 66.5 98 0.0021 27.7 10.4 57 345-401 82-143 (380)
385 KOG2471 TPR repeat-containing 66.4 1.2E+02 0.0026 28.8 14.3 38 417-455 344-381 (696)
386 KOG3807 Predicted membrane pro 66.0 49 0.0011 29.2 8.1 57 271-327 280-336 (556)
387 PF08424 NRDE-2: NRDE-2, neces 65.4 1.1E+02 0.0023 27.7 15.5 24 416-439 162-185 (321)
388 PRK10941 hypothetical protein; 65.3 94 0.002 27.1 10.1 75 270-346 185-259 (269)
389 COG5159 RPN6 26S proteasome re 64.9 95 0.0021 27.0 10.7 123 347-469 12-151 (421)
390 PF12862 Apc5: Anaphase-promot 64.4 39 0.00083 23.6 6.3 19 311-329 50-68 (94)
391 COG5108 RPO41 Mitochondrial DN 63.6 58 0.0013 32.0 8.8 90 343-435 33-130 (1117)
392 KOG2063 Vacuolar assembly/sort 63.5 1.9E+02 0.0042 30.1 17.3 26 54-79 507-532 (877)
393 KOG0991 Replication factor C, 63.4 91 0.002 26.3 12.4 137 339-484 131-279 (333)
394 PF11663 Toxin_YhaV: Toxin wit 63.4 8.6 0.00019 28.7 2.8 29 422-452 109-137 (140)
395 cd00280 TRFH Telomeric Repeat 63.3 64 0.0014 25.9 7.6 48 354-401 85-139 (200)
396 PF11846 DUF3366: Domain of un 63.1 83 0.0018 25.7 9.2 35 440-476 141-175 (193)
397 PF13762 MNE1: Mitochondrial s 61.4 73 0.0016 24.5 11.2 80 376-455 42-127 (145)
398 COG1747 Uncharacterized N-term 59.3 1.7E+02 0.0037 28.1 23.9 180 228-418 63-249 (711)
399 KOG2908 26S proteasome regulat 59.2 1E+02 0.0022 27.6 8.8 107 71-180 58-176 (380)
400 COG0735 Fur Fe2+/Zn2+ uptake r 59.1 49 0.0011 25.5 6.5 27 167-193 26-52 (145)
401 PF14689 SPOB_a: Sensor_kinase 58.8 27 0.00058 22.1 4.2 30 407-436 22-51 (62)
402 KOG4642 Chaperone-dependent E3 58.4 1.2E+02 0.0025 25.8 9.1 119 348-470 20-144 (284)
403 PF11846 DUF3366: Domain of un 57.9 50 0.0011 27.0 6.9 30 336-365 142-171 (193)
404 COG0735 Fur Fe2+/Zn2+ uptake r 57.1 58 0.0013 25.2 6.6 59 329-388 12-70 (145)
405 KOG0686 COP9 signalosome, subu 57.1 1.6E+02 0.0035 27.2 14.7 17 351-367 317-333 (466)
406 PRK10564 maltose regulon perip 57.0 25 0.00053 30.8 4.9 36 411-446 260-295 (303)
407 COG5108 RPO41 Mitochondrial DN 55.4 78 0.0017 31.2 8.1 91 378-471 33-131 (1117)
408 PF15297 CKAP2_C: Cytoskeleton 55.1 1.6E+02 0.0035 26.6 9.5 44 445-488 142-185 (353)
409 cd08819 CARD_MDA5_2 Caspase ac 55.1 67 0.0014 22.1 7.4 65 357-427 21-85 (88)
410 TIGR03362 VI_chp_7 type VI sec 55.1 1.5E+02 0.0034 26.3 16.4 58 8-66 91-148 (301)
411 KOG2297 Predicted translation 55.0 1.5E+02 0.0033 26.2 16.1 139 234-393 199-341 (412)
412 PF11817 Foie-gras_1: Foie gra 54.9 1E+02 0.0023 26.4 8.6 58 130-187 182-244 (247)
413 COG5187 RPN7 26S proteasome re 54.9 1.5E+02 0.0032 26.0 12.9 110 289-400 102-219 (412)
414 PF04910 Tcf25: Transcriptiona 54.8 1.8E+02 0.0038 26.9 17.7 56 345-400 110-166 (360)
415 KOG4279 Serine/threonine prote 54.1 2.5E+02 0.0055 28.4 16.1 121 248-374 180-321 (1226)
416 PRK10564 maltose regulon perip 53.7 31 0.00068 30.1 5.0 43 440-482 253-296 (303)
417 PF14669 Asp_Glu_race_2: Putat 53.5 1.2E+02 0.0026 24.6 14.5 26 270-295 136-161 (233)
418 COG0790 FOG: TPR repeat, SEL1 53.4 1.6E+02 0.0035 26.0 22.2 125 353-484 128-278 (292)
419 PF09670 Cas_Cas02710: CRISPR- 53.0 1.9E+02 0.0042 26.8 11.5 56 310-367 139-198 (379)
420 PF09670 Cas_Cas02710: CRISPR- 52.0 2E+02 0.0044 26.7 11.1 14 315-328 254-267 (379)
421 KOG3364 Membrane protein invol 51.7 1.1E+02 0.0023 23.4 9.6 67 371-437 30-100 (149)
422 PRK11639 zinc uptake transcrip 51.5 74 0.0016 25.4 6.6 63 327-390 15-77 (169)
423 KOG4642 Chaperone-dependent E3 50.8 1.6E+02 0.0034 25.1 10.7 119 311-434 19-143 (284)
424 PRK11639 zinc uptake transcrip 49.9 1.1E+02 0.0023 24.5 7.3 44 167-210 31-74 (169)
425 PF04190 DUF410: Protein of un 49.9 1.7E+02 0.0038 25.4 16.7 147 24-189 18-169 (260)
426 KOG2396 HAT (Half-A-TPR) repea 49.0 2.5E+02 0.0054 26.9 34.6 244 212-471 298-558 (568)
427 KOG0376 Serine-threonine phosp 48.6 28 0.0006 32.5 4.1 107 345-456 11-118 (476)
428 KOG0403 Neoplastic transformat 48.5 2.4E+02 0.0052 26.6 21.5 92 376-472 512-611 (645)
429 PF02847 MA3: MA3 domain; Int 48.3 96 0.0021 22.4 6.5 59 96-156 7-67 (113)
430 PF02847 MA3: MA3 domain; Int 47.2 1.1E+02 0.0023 22.2 7.0 20 380-399 9-28 (113)
431 COG5159 RPN6 26S proteasome re 47.2 2E+02 0.0043 25.2 21.1 146 17-163 4-166 (421)
432 KOG4567 GTPase-activating prot 46.7 1.3E+02 0.0029 26.5 7.5 57 358-419 263-319 (370)
433 PRK11619 lytic murein transgly 46.7 3.3E+02 0.0071 27.6 37.5 116 209-328 254-372 (644)
434 KOG4521 Nuclear pore complex, 46.5 4.1E+02 0.009 28.7 14.6 121 268-395 985-1124(1480)
435 PHA02875 ankyrin repeat protei 46.4 2.6E+02 0.0055 26.3 16.6 15 101-115 9-23 (413)
436 PF09454 Vps23_core: Vps23 cor 46.3 78 0.0017 20.3 5.0 49 406-455 6-54 (65)
437 cd08819 CARD_MDA5_2 Caspase ac 46.3 96 0.0021 21.4 7.3 64 393-462 22-85 (88)
438 COG5187 RPN7 26S proteasome re 46.2 2.1E+02 0.0045 25.2 10.7 108 79-188 103-219 (412)
439 KOG2034 Vacuolar sorting prote 45.7 3.7E+02 0.008 27.9 26.1 258 132-425 364-645 (911)
440 PRK09857 putative transposase; 45.3 1.9E+02 0.0041 25.7 8.7 25 453-477 250-274 (292)
441 PRK10941 hypothetical protein; 44.4 2.2E+02 0.0047 24.9 10.7 79 411-490 184-263 (269)
442 smart00638 LPD_N Lipoprotein N 44.2 3.4E+02 0.0073 27.1 24.7 63 90-157 309-371 (574)
443 KOG3364 Membrane protein invol 43.8 1.4E+02 0.0031 22.7 9.2 66 337-402 31-100 (149)
444 KOG0687 26S proteasome regulat 43.6 2.4E+02 0.0053 25.3 14.6 136 261-400 65-208 (393)
445 smart00386 HAT HAT (Half-A-TPR 43.6 45 0.00099 16.8 3.5 13 424-436 3-15 (33)
446 KOG2582 COP9 signalosome, subu 43.2 2.6E+02 0.0057 25.5 16.1 57 54-112 105-161 (422)
447 KOG4567 GTPase-activating prot 42.8 1E+02 0.0022 27.2 6.3 70 393-467 263-342 (370)
448 cd07153 Fur_like Ferric uptake 42.8 73 0.0016 23.2 5.1 46 21-66 5-50 (116)
449 PF09986 DUF2225: Uncharacteri 42.1 1.3E+02 0.0028 25.2 6.8 24 97-120 171-194 (214)
450 KOG1586 Protein required for f 42.0 2.2E+02 0.0047 24.2 16.7 151 27-193 25-186 (288)
451 PRK09462 fur ferric uptake reg 41.7 1.2E+02 0.0025 23.5 6.3 60 329-389 8-68 (148)
452 KOG0292 Vesicle coat complex C 41.5 4.3E+02 0.0094 27.6 11.5 176 102-328 604-779 (1202)
453 KOG1308 Hsp70-interacting prot 41.4 24 0.00052 31.4 2.5 87 314-404 126-213 (377)
454 PF06957 COPI_C: Coatomer (COP 41.1 3.1E+02 0.0068 25.8 10.4 23 271-293 123-145 (422)
455 PF07575 Nucleopor_Nup85: Nup8 40.5 51 0.0011 32.6 5.0 59 163-223 407-465 (566)
456 PF10366 Vps39_1: Vacuolar sor 40.5 1.4E+02 0.0031 21.6 8.2 26 411-436 42-67 (108)
457 PF04090 RNA_pol_I_TF: RNA pol 40.3 1.5E+02 0.0032 24.5 6.6 63 92-154 42-104 (199)
458 COG5116 RPN2 26S proteasome re 40.1 2.8E+02 0.0061 27.1 9.1 25 412-436 212-236 (926)
459 KOG1308 Hsp70-interacting prot 39.5 27 0.0006 31.0 2.6 119 348-470 124-242 (377)
460 PRK09462 fur ferric uptake reg 39.4 1.6E+02 0.0034 22.8 6.7 33 176-208 32-64 (148)
461 PF09868 DUF2095: Uncharacteri 39.2 1.2E+02 0.0026 22.1 5.1 21 453-473 71-91 (128)
462 KOG2471 TPR repeat-containing 38.7 3.6E+02 0.0079 25.8 16.0 108 382-491 249-382 (696)
463 KOG2066 Vacuolar assembly/sort 38.6 4.5E+02 0.0098 26.9 28.1 103 22-138 362-467 (846)
464 cd00280 TRFH Telomeric Repeat 37.5 2.2E+02 0.0048 23.1 11.7 22 168-189 118-139 (200)
465 PF12926 MOZART2: Mitotic-spin 37.1 1.4E+02 0.003 20.5 7.6 42 359-400 29-70 (88)
466 PF09868 DUF2095: Uncharacteri 36.6 1.6E+02 0.0034 21.5 5.4 38 344-382 67-104 (128)
467 KOG0687 26S proteasome regulat 36.6 3.2E+02 0.0069 24.6 12.5 96 339-436 105-209 (393)
468 PF02184 HAT: HAT (Half-A-TPR) 36.5 71 0.0015 17.1 3.5 22 459-482 3-24 (32)
469 PF02607 B12-binding_2: B12 bi 36.3 72 0.0016 21.2 3.9 36 421-456 14-49 (79)
470 KOG0545 Aryl-hydrocarbon recep 36.2 2.8E+02 0.006 23.8 10.0 55 416-471 238-292 (329)
471 KOG4279 Serine/threonine prote 36.2 4.9E+02 0.011 26.6 14.5 106 90-197 200-321 (1226)
472 PF14853 Fis1_TPR_C: Fis1 C-te 35.7 1.1E+02 0.0023 18.7 5.4 23 415-437 8-30 (53)
473 cd07153 Fur_like Ferric uptake 34.3 1.3E+02 0.0029 21.8 5.4 44 132-175 6-49 (116)
474 COG4259 Uncharacterized protei 34.2 1.7E+02 0.0037 20.8 5.9 57 283-343 54-110 (121)
475 KOG0376 Serine-threonine phosp 33.9 1.1E+02 0.0024 28.8 5.6 107 308-420 10-117 (476)
476 COG2178 Predicted RNA-binding 33.8 2.7E+02 0.0058 22.8 8.5 27 54-80 32-58 (204)
477 PF09454 Vps23_core: Vps23 cor 33.7 86 0.0019 20.2 3.6 45 338-383 8-52 (65)
478 KOG0292 Vesicle coat complex C 32.5 5.8E+02 0.013 26.7 10.3 158 97-296 626-783 (1202)
479 COG2405 Predicted nucleic acid 32.2 1.3E+02 0.0028 22.9 4.7 36 453-488 119-154 (157)
480 COG4259 Uncharacterized protei 31.9 1.9E+02 0.0041 20.5 7.5 59 425-485 54-112 (121)
481 PF12968 DUF3856: Domain of Un 31.8 2.2E+02 0.0047 21.2 7.8 57 27-83 20-87 (144)
482 cd08315 Death_TRAILR_DR4_DR5 D 31.7 1.9E+02 0.0041 20.4 6.2 48 424-473 47-94 (96)
483 COG2137 OraA Uncharacterized p 31.2 2.8E+02 0.0061 22.3 10.1 111 356-470 53-165 (174)
484 PF09477 Type_III_YscG: Bacter 30.8 2.1E+02 0.0046 20.8 9.2 17 278-294 81-97 (116)
485 PF11838 ERAP1_C: ERAP1-like C 30.4 4E+02 0.0086 23.8 18.9 194 21-221 45-262 (324)
486 PRK09857 putative transposase; 30.3 3.9E+02 0.0085 23.7 9.0 65 377-442 210-274 (292)
487 PF01475 FUR: Ferric uptake re 30.1 1.3E+02 0.0029 22.0 4.8 45 131-175 12-56 (120)
488 PF05944 Phage_term_smal: Phag 30.1 2.2E+02 0.0047 21.7 5.7 51 251-301 33-83 (132)
489 PF12796 Ank_2: Ankyrin repeat 29.9 1.8E+02 0.0038 19.6 6.3 14 102-115 5-18 (89)
490 PF03745 DUF309: Domain of unk 29.9 1.5E+02 0.0033 18.8 6.0 33 102-134 10-42 (62)
491 PF01475 FUR: Ferric uptake re 29.7 82 0.0018 23.2 3.6 46 20-65 11-56 (120)
492 PHA02875 ankyrin repeat protei 29.6 4.8E+02 0.01 24.5 17.0 140 27-184 10-155 (413)
493 PF13934 ELYS: Nuclear pore co 29.3 3.5E+02 0.0077 22.9 13.7 175 175-360 24-198 (226)
494 PF15297 CKAP2_C: Cytoskeleton 29.1 3.3E+02 0.0072 24.7 7.4 64 107-172 119-186 (353)
495 PF09986 DUF2225: Uncharacteri 28.6 3.5E+02 0.0076 22.6 11.6 22 451-472 173-194 (214)
496 PF09477 Type_III_YscG: Bacter 28.4 2.3E+02 0.0051 20.5 9.9 79 281-368 21-99 (116)
497 smart00804 TAP_C C-terminal do 28.2 64 0.0014 20.6 2.3 24 279-302 38-61 (63)
498 PF14561 TPR_20: Tetratricopep 28.0 2.1E+02 0.0046 19.8 9.5 31 301-331 21-51 (90)
499 PRK12356 glutaminase; Reviewed 27.8 4.5E+02 0.0098 23.7 8.1 16 86-101 93-108 (319)
500 PF11123 DNA_Packaging_2: DNA 27.7 1.9E+02 0.004 19.1 5.1 32 281-314 12-43 (82)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-69 Score=529.99 Aligned_cols=465 Identities=15% Similarity=0.205 Sum_probs=428.6
Q ss_pred CChhhHHHHH---HhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 17 PPVASLTSAL---AITGEMDVAYKVFDEMRHCGV-LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 17 ~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
++...++.+| ++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..++|..+ ++.|+. |+..
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~l----f~~M~~-----pd~~ 438 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF----AKLIRN-----PTLS 438 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHH----HHHcCC-----CCHH
Confidence 4444555555 788999999999999999986 45777888899999999999999774 455542 8999
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
+|+.++.+|++.|++++|.++|+.|.+.|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHh--CCCCCchhhHHHHHHHHhccCChHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS--KKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
+.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .+..|+..+|+.++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999975 57889999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 330 (499)
.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.+. .||..+|+.++.+|++.|++++|.+++.+ |.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~~l~~e-M~ 676 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAFEILQD-AR 676 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999999886 89999999999999999999999999988 55
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH
Q 010853 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 410 (499)
Q Consensus 331 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (499)
..|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|..||..+
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c-------------------CChHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK----L-------------------SMKREAYQILR 467 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~ 467 (499)
|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999866432 1 12367999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHhcccC
Q 010853 468 EMRKNGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 468 ~m~~~g~~p~~~~~~~l~~~~~~~g 492 (499)
+|++.|+.||..||+.++.+++..+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999997665544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-67 Score=518.00 Aligned_cols=459 Identities=16% Similarity=0.225 Sum_probs=432.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...+.+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|+++.|..++. .|.+. ++.||..+|+.+|.+|
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~----~M~~~-Gl~pD~~tynsLI~~y 482 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLR----LVQEA-GLKADCKLYTTLISTC 482 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHH----HHHHc-CCCCCHHHHHHHHHHH
Confidence 44556889999999999999975 899999999999999999999988654 44444 8999999999999999
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--CCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 182 QLLEEGIQ--FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 182 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+..|+..+|+.++.+|++.|++++|.++|++|.+
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999976 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh
Q 010853 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
.|+.||..+|+.++.+|++.|++++|.++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++ |...++.||..
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~e-M~~~g~~Pdvv 720 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVS 720 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHH
Confidence 99999999999999999999999999999999999886 99999999999999999999999999988 55788999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+|++++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred h----c-------------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 420 R----S-------------------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 420 ~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+ + +..++|..+|++|++.|+.||..||+.++.++++.+..+.+..+++.|...+..|
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~ 880 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ 880 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc
Confidence 2 1 2346899999999999999999999999988888999999999999998888999
Q ss_pred CHhHHHHHHHHhccc
Q 010853 477 DAVTWRILDKLHGNR 491 (499)
Q Consensus 477 ~~~~~~~l~~~~~~~ 491 (499)
+..+|+.|++++++.
T Consensus 881 ~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 881 KQSNLSTLVDGFGEY 895 (1060)
T ss_pred chhhhHHHHHhhccC
Confidence 999999999998654
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-65 Score=513.89 Aligned_cols=459 Identities=18% Similarity=0.235 Sum_probs=337.8
Q ss_pred CCChhhHHHHH---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 16 FPPVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 16 ~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
.|+..+|+.++ ++.|++++|+++|++|...|+.||..+|+.++++|.+.++...+.+++..+.. . +..|+..
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~----~-g~~~~~~ 223 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR----F-GFELDVD 223 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH----c-CCCcccc
Confidence 45666666555 89999999999999999999999999888888888888887777765544432 2 6777777
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
++++++.+|++.|++++|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 788888888888888888888887764 5667777888888888888888888877777777777777777777777
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
+.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|++++|.+
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 7777777777777777777777777777777777777777777777766642 455566666666666666666666
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc--
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP-- 330 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 330 (499)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.+. .|+..+|+.++.+|++.|++++|.++|+++.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 666666666666666666666666666666666666666665554 55555555555555555555555555554211
Q ss_pred ---------------------------cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 331 ---------------------------QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 331 ---------------------------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
..++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.|+.+|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 01345555555555555555555555555555555555555555556666666
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 6777777777777665 56888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HCCCCCCHhHHHHHHHHhcccCC
Q 010853 464 QILREMR-KNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 464 ~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
++|+.|. +.|+.|+..+|+.++++|++.|+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 9999998 78999999999999999999987
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-62 Score=482.12 Aligned_cols=450 Identities=18% Similarity=0.229 Sum_probs=422.3
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
.+.+..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..+ ... ++.|+..+|+.++
T Consensus 91 ~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m----~~~-g~~~~~~~~n~Li 165 (697)
T PLN03081 91 CSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHV----ESS-GFEPDQYMMNRVL 165 (697)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHh-CCCcchHHHHHHH
Confidence 344445589999999999999998764 6799999999999999999999998865544 333 8899999999999
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 178 (499)
..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999999999999976 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 179 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ++..+|+.++.+|++.|++++|.++|++|.
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999853 577899999999999999999999999999
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch
Q 010853 259 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 338 (499)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (499)
+.|+.||..||+.++.+|++.|++++|.+++..|.+.+. .||..+|+.++.+|++.|++++|.++|+++. .||.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~ 391 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNL 391 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCe
Confidence 999999999999999999999999999999999999886 8999999999999999999999999998853 4799
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc-CCCCCCHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-PSNIHDNYVYAAMIKG 417 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 417 (499)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .+..|+..+|+.++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999975 6899999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..|+..|++.|+
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCC
Confidence 99999999999998865 5789999999999999999999999999999975 6675 6799999999999997
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-62 Score=491.93 Aligned_cols=448 Identities=19% Similarity=0.239 Sum_probs=398.6
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
...+++..|++.|+++.|.++|++|.. ||..+||+++.+|.+.|++++|..++ .+|... ++.||..||+.+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf----~~M~~~-g~~Pd~~ty~~l 294 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELF----FTMREL-SVDPDLMTITSV 294 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHH----HHHHHc-CCCCChhHHHHH
Confidence 344555666888888888888888864 67888888888888888888887754 444444 788888999999
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
+.+|++.|+++.|.+++..+.+.|..||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~ 370 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLP 370 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCH
Confidence 99999999999999999988888888898999999999999999999999998886 36888899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 178 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|..++..+++.++.+|++.|++++|.++|++|
T Consensus 371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999998889999999999999999999999999999999988888888889999999999999999999999888
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc
Q 010853 258 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 337 (499)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (499)
.+ +|..+|+.++.+|++.|+.++|..+|++|... ..||..||+.++.+|++.|..+.+.+++..+ ...|+.++
T Consensus 451 ~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~-~~~g~~~~ 523 (857)
T PLN03077 451 PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHV-LRTGIGFD 523 (857)
T ss_pred CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhhchHHHhHHHHHHH-HHhCCCcc
Confidence 63 57788999999999999999999999999763 4899999999999999999999999988874 57899999
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
..+++.++.+|++.|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999987 579999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCC
Q 010853 418 LCRSGKIHEAVHFLYELV-DSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
|.+.|.+++|.++|++|. +.|+.|+..+|+.++.+|.+.|++++|.+++++|. +.||..+|+.|+.+|...|+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999 68999999999999999999999999999999983 78999999999999987776
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-61 Score=472.66 Aligned_cols=438 Identities=17% Similarity=0.200 Sum_probs=412.1
Q ss_pred CCChhhHHHHH---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 16 FPPVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 16 ~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
.|+..+++.++ ++.++++.|.+++..|.+.|+.||..+|+.++.+|.+.|++++|..+ |++|+ .||..
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l----f~~m~-----~~~~~ 190 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL----FDEMP-----ERNLA 190 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH----HhcCC-----CCCee
Confidence 35666666665 88999999999999999999999999999999999999999999874 55554 36899
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
+|++++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+.+.|+.||..+|+.|+.+|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
+.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|...+..|+..+|+.++.+|++.|++++|.+
T Consensus 271 k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999954 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.|+.+|++.|+.++|.++|++ |...
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~-M~~~ 420 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFER-MIAE 420 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHH-HHHh
Confidence 99999999999999999999999999999999999999996 57999999999999999999999999999 5588
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~ 497 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMW 497 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHH
Confidence 9999999999999999999999999999999986 699999999999999999999999999999876 468999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
++|+.+|...|+++.|..+++++.+.++ .+..+|..++..|++.|++++|.+++++|.+.|+..
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGP-EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCC-CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999999999976542 256799999999999999999999999999998753
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-29 Score=260.11 Aligned_cols=451 Identities=14% Similarity=0.064 Sum_probs=371.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...+.+.|++++|+++++.+.... ++++.++..+..++...|++++|...+.++++..+ .+...+..+...+
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~la~~~ 509 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP------DFFPAAANLARID 509 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC------CcHHHHHHHHHHH
Confidence 3444477888888888888887653 45677888888888889999998888777765322 2445677788888
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
...|++++|.+.++.+...++ .+..++..+...+.+.|+.++|...++++.+.+. .+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHH
Confidence 888999999999988877654 4567788888888889999999999988877643 35667788888899999999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 261 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (499)
++++.+.+.. +.+...|..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++.+.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999887643 446678888999999999999999999998753 34456678888888999999999999999988765
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhH
Q 010853 262 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 341 (499)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (499)
+ .+..++..+...+...|++++|.++++.+.... +.+...+..+...+...|++++|...+.+++.. .|+..++
T Consensus 666 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 739 (899)
T TIGR02917 666 P-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNA 739 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHH
Confidence 3 367788889999999999999999999998765 567788888899999999999999999887644 3555677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+..+ .+..+++.+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 788889999999999999999998875 66788899999999999999999999999987654 4778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCC
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 494 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 494 (499)
|+ .+|+.+++++.+.... +..++..+...+...|++++|.++++++.+.+.. +..++..+..++.+.|+.
T Consensus 818 ~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~ 887 (899)
T TIGR02917 818 KD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRK 887 (899)
T ss_pred Cc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCH
Confidence 99 8899999999886433 5667888888999999999999999999986643 888999999999999874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.4e-29 Score=255.75 Aligned_cols=430 Identities=12% Similarity=0.037 Sum_probs=374.1
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
..+..++...|++++|.+.|+++.+.. +.+...+..++..+...|++++|...+.++++..+ .+..++..+..
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~ 541 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAG 541 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------CcHHHHHHHHH
Confidence 344556689999999999999998864 34677788899999999999999998888776432 25678888999
Q ss_pred HHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 010853 100 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 179 (499)
.+.+.|+.++|...++++...++ .+...+..+...+...|++++|..+++.+.+.. ..+...|..+..++...|++++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887665 556678889999999999999999999998764 3467889999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 180 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
|...|+.+.+.. +.+...+..+...+...|++++|..+++++.+ ..+.+...+..+...+...|++++|.++++.+.+
T Consensus 620 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE-LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998754 23567788899999999999999999999985 3455677899999999999999999999999998
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh
Q 010853 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
..+ .+...+..+...+...|++++|...|+.+.... |+..++..+..++.+.|++++|.+.+.+.+... +.+..
T Consensus 698 ~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~ 771 (899)
T TIGR02917 698 QHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAV 771 (899)
T ss_pred hCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH
Confidence 864 467788889999999999999999999998764 555778889999999999999999999977554 55778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..+...+...|++++|..+|+++.+.. +.+..++..+...+...|+ .+|..+++++....+. +..++..+...+.
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 848 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence 88889999999999999999999999876 6688899999999999999 8899999999876543 5667888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
..|++++|.++++++.+.+.. +..++..+..++.+.|++++|.+++++|+
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999998755 88999999999999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.1e-21 Score=202.97 Aligned_cols=438 Identities=11% Similarity=0.030 Sum_probs=333.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCc-c-------CHHhHH
Q 010853 24 SALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLS-V-------NNAAFA 95 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~-------~~~~~~ 95 (499)
..+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..+.++++.-+...... + ......
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34478899999999999999864 34788899999999999999999999988876544321100 0 001112
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.....+.+.|++++|+..|+++.+..+ .+..++..+..++...|++++|.+.|++..+.... +...+..+...+. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hc
Confidence 335567889999999999999988765 45667778899999999999999999999987432 4556666777664 56
Q ss_pred ChhHHHHHHHHHHhCCCC--------CCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh
Q 010853 176 GCMRAYQLLEEGIQFGYL--------PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 247 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (499)
+.++|..+++.+...... .....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCH
Confidence 789999888765432100 11234556777888999999999999999853 344566788889999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHH---------HHHHHHHHHHccCCH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV---------TFTTIIFGLLNVGRI 318 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~ 318 (499)
++|...++++.+..+. +...+..+...+...++.++|+..++.+..... .++.. .+..+...+...|+.
T Consensus 512 ~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~-~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 512 SQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW-NSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc-ChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999876533 444555555667788999999999998764322 22221 123456678899999
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 398 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (499)
++|..++.. .+.+...+..+...+.+.|++++|...|+...+.. +.+...+..++..+...|++++|.+.++.
T Consensus 590 ~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999998863 14455667778888999999999999999999875 55788899999999999999999999998
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH-HC
Q 010853 399 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-----NIVCYNVVIDGACKLSMKREAYQILREMR-KN 472 (499)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~ 472 (499)
+...... +...+..+..++...|++++|.++++++....... +...+..+...+...|++++|+..|++.. ..
T Consensus 663 ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 663 LPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 8765332 55567778889999999999999999998754221 22456666788899999999999999975 34
Q ss_pred CCCC
Q 010853 473 GLNP 476 (499)
Q Consensus 473 g~~p 476 (499)
|+.|
T Consensus 742 ~~~~ 745 (1157)
T PRK11447 742 GITP 745 (1157)
T ss_pred CCCC
Confidence 5543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.2e-21 Score=198.14 Aligned_cols=451 Identities=13% Similarity=0.051 Sum_probs=297.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLT-YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
...++.+.|++++|++.|+.+...+ +|+... ...+.......|+.++|...++++.+..|. +...+..+...
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~------~~~~~~~LA~l 190 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG------NTGLRNTLALL 190 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC------CHHHHHHHHHH
Confidence 3445678888888888888887753 333321 111222223457888888877777665433 34566677788
Q ss_pred HHcCCCHhHHHHHHHhccCCCCC--------------------------------CchhhH-------------------
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSV--------------------------------NEEFAC------------------- 129 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~------------------- 129 (499)
+...|+.++|++.++++...... |+....
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 88888888888888776432210 000000
Q ss_pred --HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc-ccH-------
Q 010853 130 --GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTY------- 199 (499)
Q Consensus 130 --~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------- 199 (499)
......+...|++++|...|++..+.... +...+..+..++.+.|++++|...|++..+....... ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 01123456678888888888888776332 5677788888888888888888888887764321111 111
Q ss_pred -----HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHH---
Q 010853 200 -----KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNT--- 271 (499)
Q Consensus 200 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 271 (499)
......+.+.|++++|...|+++... .+.+...+..+...+...|++++|++.|++..+.... +...+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQV-DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 12234566788888888888888754 3344556667778888888888888888887765432 2222222
Q ss_pred ---------------------------------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 272 ---------------------------------------VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 272 ---------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
+...+...|++++|++.|++..+.. +.+...+..+...|
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 2334556788888888888887764 44566777788888
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHH--------------------------------------------HHH
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL--------------------------------------------RGL 348 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll--------------------------------------------~~~ 348 (499)
.+.|++++|...+++.+....- +...+..+. ..+
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 8889999998888887654322 222222222 223
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|+.++|..+++. .+.+...+..+...+.+.|++++|...++++....+. +...+..++..|...|++++|.
T Consensus 584 ~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 334444444444441 2445566777888889999999999999999876544 6778889999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C---CHhHHHHHHHHhcccCC
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN--P---DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--p---~~~~~~~l~~~~~~~g~ 493 (499)
+.++.+.+... .+...+..+..++...|++++|.++++++....-. | +...+..+.+.+.+.|+
T Consensus 658 ~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~ 726 (1157)
T PRK11447 658 AQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ 726 (1157)
T ss_pred HHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC
Confidence 99998876532 24556677788888999999999999998764221 1 22455555666666665
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.1e-21 Score=171.78 Aligned_cols=436 Identities=13% Similarity=0.055 Sum_probs=339.2
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
...+...+.+.|++..|.+--...-..+ +.+....-.+-..+.+..+++...+.-...++ ....-..+|..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r------~~~q~ae~ysn~a 123 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR------KNPQGAEAYSNLA 123 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhh------ccchHHHHHHHHH
Confidence 3444555567777777777666555543 22333333444555555555554432221222 1222457899999
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH-HHHHHHccCCh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS-IVHGLCKHGGC 177 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~~~~ 177 (499)
+.+-..|++++|+..++.+.+..+ ....+|..+..++...|+.+.|.+.|....+. .|+.....+ +...+...|+.
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhccc
Confidence 999999999999999999988765 45778999999999999999999999998876 555554433 44445558999
Q ss_pred hHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 178 MRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
++|...|.+.++. .|. ...|+.|...+...|++..|+..|++..+- .+.-...|-.+...|...+.+++|...+..
T Consensus 201 ~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 201 EEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred chhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999988774 343 467888999999999999999999998742 333356888899999999999999999988
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 336 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 336 (499)
.....+. ....+..+...|...|.++.|+..+++..+.. +.-...|+.|..++-..|+..+|.+.|.+.+.-. +.
T Consensus 278 Al~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~ 352 (966)
T KOG4626|consen 278 ALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--PN 352 (966)
T ss_pred HHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--Cc
Confidence 8776432 56677788888999999999999999998765 4447889999999999999999999999987554 22
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
.....+.+...+...|.++.|..+|....+.. +--....+.|...|-..|++++|...+++.+...+. -...|+.+..
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGn 430 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGN 430 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcch
Confidence 34567889999999999999999999998853 334567889999999999999999999999764332 2347899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
.|-..|+.+.|++.+.+.+..++. =...++.|...|-..|+..+|+.-+++..+ ++||
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 999999999999999999876432 346788999999999999999999999987 6776
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.7e-19 Score=175.53 Aligned_cols=424 Identities=11% Similarity=-0.010 Sum_probs=275.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 104 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (499)
.+.+.|++++|+..|++.... .|++..|..+..++.+.|++++|...+.++++.-+ -+...+..+..++...
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p------~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP------DYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHc
Confidence 347789999999999998875 47778888888899999999999888877765322 2456778888889999
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 184 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (499)
|++++|+.-|..+...+...+... ..++..+.. ..+........+.. .++...+..+.. +...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999887766544332222211 111211111 12222222222221 112223322222 21111111111111
Q ss_pred HHHHhCCCCCC-cccHHHHHHH---HhcCCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 185 EEGIQFGYLPS-EHTYKVLVEG---LCGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
....+ ..+. ...+..+... ....+++++|.+.|+.....+ .+.....+..+...+...|++++|...++...
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11111 1111 1111111111 123467888888888887654 22334467777778888889999998888888
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch
Q 010853 259 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 338 (499)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (499)
+..+. ....|..+..++...|++++|...|+++.+.. +.+...|..+...+...|++++|...|.+.+... +.+.
T Consensus 359 ~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~ 433 (615)
T TIGR00990 359 ELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFI 433 (615)
T ss_pred HcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCH
Confidence 76432 45577778888888889999999888887654 4567788888888888899999998888876543 3345
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH------HHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY------VYA 412 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~ 412 (499)
..+..+..++.+.|++++|+..|+...+.. +.+...++.+..++...|++++|...|++........+.. .++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 666677778888899999999998887753 4467788888888888899999999888887554321111 122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
..+..+...|++++|.+++++....+.. +...+..+...+...|++++|++.|++..+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2223344468888999988888776532 4456788888888899999999888888653
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4.5e-21 Score=177.55 Aligned_cols=302 Identities=12% Similarity=0.043 Sum_probs=178.2
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC---cccHHHHHHHHhcCCC
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS---EHTYKVLVEGLCGESD 211 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 211 (499)
.+...|++++|...|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++ ...+..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666666666666655321 334555555555666666666666655554321111 1233444444555555
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 291 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 291 (499)
++.|..+|+++. +.. +.+..++..++..+.+.|++++|.+.++.
T Consensus 123 ~~~A~~~~~~~l-----------------------------------~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 123 LDRAEELFLQLV-----------------------------------DEG-DFAEGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHHHHHHHH-----------------------------------cCC-cchHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 555555555544 332 22455566666666666666666666666
Q ss_pred HhhCCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 292 MVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 292 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
+.+.....+. ...+..+...+.+.|++++|...+.++.+.. +.+...+..+...+.+.|++++|.++++++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 167 LEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 6554321111 1233445556666777777777776655332 2234455666667777777777777777776643
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNV 448 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 448 (499)
......++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++.
T Consensus 245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~ 320 (389)
T PRK11788 245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHR 320 (389)
T ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHH
Confidence 22223456677777777777777777777776543 34455567777777777777777777777765 566667776
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHCCCCCCHh
Q 010853 449 VIDGACK---LSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 449 l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 6666554 446777777777777766666654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=2.1e-19 Score=174.25 Aligned_cols=330 Identities=12% Similarity=0.063 Sum_probs=142.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHH
Q 010853 55 SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 134 (499)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 134 (499)
..++..+.+.|++++|..++..++...+. +...+..++.++...|++++|...++.+....+ .+...+..+..
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~ 118 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 33444455555555555554444443222 122333344444445555555555555544433 23334444445
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (499)
.+...|++++|...++...+.... +...+..+..++...|++++|...++.+...... +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 555555555555555555443111 2334444455555555555555555544332211 11111111 22444455555
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHH
Q 010853 215 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE----ALKVLN 290 (499)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 290 (499)
|...++.+......++......+...+...|++++|...++...+..+. +...+..+...+...|++++ |...|+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 5555555443322222222233334444455555555555544443321 33344444444444554443 444444
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010853 291 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370 (499)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (499)
...+.. +.+...+..+...+...|++++|...+++.+... +.+...+..+..++...|++++|...++.+.+.+ +
T Consensus 275 ~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P 349 (656)
T PRK15174 275 HALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-G 349 (656)
T ss_pred HHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-c
Confidence 444432 2334444444444555555555555444443322 1122233334444444455555555554444432 1
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
.+...+..+..++...|+.++|...|++..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111222223334444455555555554444
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=9.5e-21 Score=175.37 Aligned_cols=309 Identities=14% Similarity=0.026 Sum_probs=231.3
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---hhhHHHHHHHHH
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS---LVSYNSIVHGLC 172 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~ 172 (499)
.....+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 344566788999999999999998765 4566888899999999999999999999988643222 246788899999
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
..|+++.|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+...
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------------- 177 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-------------------- 177 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH--------------------
Confidence 9999999999999998753 3466788889999999999999999999887543221100
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
.....+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.+.++....
T Consensus 178 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 178 -----------EIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred -----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 001123455666677777777777777776543 3345566677777777888888888777765332
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
......++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++
T Consensus 245 -p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 245 -PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred -hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 1111345677788888888888888888888775 355566678888888889999999988888654 56777888
Q ss_pred HHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChh
Q 010853 413 AMIKGLCR---SGKIHEAVHFLYELVDSGVTPNIV 444 (499)
Q Consensus 413 ~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 444 (499)
.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 77777664 457888888898888877777665
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=3.4e-19 Score=172.76 Aligned_cols=334 Identities=13% Similarity=0.062 Sum_probs=266.8
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
+...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...+.+++..-|. +...+..+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~------~~~a~~~l 116 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC------QPEDVLLV 116 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC------ChHHHHHH
Confidence 34455666689999999999999998863 446777888888889999999999988887765443 35567888
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
...+.+.|++++|...+++.....+ .+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++
T Consensus 117 a~~l~~~g~~~~Ai~~l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~ 193 (656)
T PRK15174 117 ASVLLKSKQYATVADLAEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRL 193 (656)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCH
Confidence 8999999999999999999987654 45677888999999999999999999988776433 23333333 347789999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHH----HHHH
Q 010853 178 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE----LLNV 253 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~ 253 (499)
++|...++.+.+....++...+..+...+...|++++|...+++.... .+.+...+..+...+...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-GLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 999999999877543344445556677888999999999999999854 45567788889999999999985 7999
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC
Q 010853 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 333 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 333 (499)
++...+..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...+.+++...
T Consensus 273 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 273 WRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 9998887543 67788999999999999999999999998765 4566778888999999999999999998876543
Q ss_pred CCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 334 YSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 334 ~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
|+. ..+..+..++...|+.++|...|+...+..
T Consensus 349 --P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 --GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred --ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 234445667889999999999999998763
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4e-20 Score=163.79 Aligned_cols=362 Identities=15% Similarity=0.054 Sum_probs=279.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH-hHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA-AFANLVDS 100 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 100 (499)
+...+...|++++|++.++.+.+.. +..+..|..+..++...|+.+.|...+...++- .|+.. ..+.+...
T Consensus 122 ~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql-------nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL-------NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc-------CcchhhhhcchhHH
Confidence 5566678899999999999998864 235778888999999999999888877666543 23322 22235555
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~ 179 (499)
+-..|++++|...+.+..+..+ --..+|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+.+++
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 6667888888888887766554 23467888888888899999999999988876 454 4578888888888999999
Q ss_pred HHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 180 AYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
|...|.+... ..|+ ...+..+...|...|.++.|+..+++.++. .+--+..|+.+..++-..|+..+|.+.+.+.+
T Consensus 271 Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL 347 (966)
T KOG4626|consen 271 AVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL 347 (966)
T ss_pred HHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence 9999888765 3454 467777888888899999999999988742 23335688889999988999999999998888
Q ss_pred hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-
Q 010853 259 QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG- 337 (499)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 337 (499)
..... ...+.+.|...|...|.++.|..+|....+-. +.-...++.|...|-+.|+.++|+..|++.++ +.|+
T Consensus 348 ~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f 421 (966)
T KOG4626|consen 348 RLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF 421 (966)
T ss_pred HhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence 76543 45677888889999999999999988887643 33466788888889999999999998888664 3454
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
...|+.+...|-..|+.+.|...+.+.+..+ +.-....+.|...|-..|++.+|++-++...+..+
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 4567888888888899999999998888764 34456788888889999999999999988876543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.8e-18 Score=170.09 Aligned_cols=405 Identities=11% Similarity=0.022 Sum_probs=238.3
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
+-+.-|+.+....|+.++|++++.+..... +.+...+..+..++...|++++|..++.++++.-|. +...+..
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~ 88 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ------NDDYQRG 88 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHH
Confidence 345668888899999999999999998632 345667899999999999999999988887764332 3556667
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
++..+...|++++|+..++++.+..+ .+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 88889999999999999999887754 4445 888888899999999999999999987433 45566667788888899
Q ss_pred hhHHHHHHHHHHhCCCCCCc------ccHHHHHHHHh-----cCCCH---HHHHHHHHHHHhC-CCCCchh-hH----HH
Q 010853 177 CMRAYQLLEEGIQFGYLPSE------HTYKVLVEGLC-----GESDL---EKARKVLQFMLSK-KDVDRTR-IC----NI 236 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 236 (499)
.+.|++.++.... .|+. .....++.... ..+++ +.|+..++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999998876554 2321 01111222221 11223 5566666666533 1112111 11 11
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--CHHHHHHHHHHHH
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP--DAVTFTTIIFGLL 313 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 313 (499)
.+..+...|++++|...|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.....+ .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 122334556666666666666655422 221 112235566666666666666666554321010 1233444555566
Q ss_pred ccCCHHHHHHHHHHHhccCC----------CCCch---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 314 NVGRIQEALNLLYQVMPQRG----------YSPGI---VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
..|++++|...+.++..... ..|+. ..+..+...+...|++++|+++++++.... +.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 66666666666665443221 01111 122233344445555555555555554432 33444445555
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+...|++++|++.++++....+. +...+...+..+...|++++|..+++++++.
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5555555555555555555443321 2333444444455555555555555555543
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=2.1e-17 Score=160.71 Aligned_cols=445 Identities=11% Similarity=0.056 Sum_probs=323.6
Q ss_pred hhHHHHH--HhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 20 ASLTSAL--AITGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 20 ~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
..+..++ .++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...+++... ..........
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~------p~n~~~~~ll 106 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS------SMNISSRGLA 106 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc------CCCCCHHHHH
Confidence 4454444 99999999999999999864 543 244 888888899999999987776651 1122333444
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.+...+...|++++|+++|+.+.+..+ .+...+..++..+...++.++|++.++.+... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 456788899999999999999998886 34667778889999999999999999999887 566666655555555566
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhh------HHHHHHHH-----hcc
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI------CNIYLRAL-----CLI 244 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~-----~~~ 244 (499)
+..+|++.++++.+.. +-+...+..+..+..+.|-...|.++.++-..- ..+.... ....++.- ...
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 7767999999999864 235677788889999999999999887764311 1111110 01111110 011
Q ss_pred CCh---HHHHHHHHHHHhc-CCCCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc
Q 010853 245 KNP---TELLNVLVFMLQT-QCQPDV-I----TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV 315 (499)
Q Consensus 245 ~~~---~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (499)
.++ +.|+.-++.+... +..|.. . ...-.+-++...|+..++++.++.+...+. +....+-..+..+|...
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDR 340 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhc
Confidence 222 3455555555542 222321 1 223445677889999999999999998764 33455788899999999
Q ss_pred CCHHHHHHHHHHHhccCC----CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----------Cc--CHH-hHH
Q 010853 316 GRIQEALNLLYQVMPQRG----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----------VA--DST-TYA 377 (499)
Q Consensus 316 ~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~--~~~-~~~ 377 (499)
+++++|..++.++....+ .+++......|.-++...+++++|..+++.+.+... .| |-. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 999999999999766543 233444457788899999999999999999987321 12 222 344
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
.++..+...|++.+|++.++++....+. |......+...+...|.+.+|.+.++....... -+..+......++...|
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhh
Confidence 5677788999999999999999876554 888999999999999999999999987776632 25667778888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHH
Q 010853 458 MKREAYQILREMRKNGLNPDAVTWRI 483 (499)
Q Consensus 458 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 483 (499)
++++|..+.+...+ ..|+......
T Consensus 499 e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 499 EWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred hHHHHHHHHHHHHh--hCCCchhHHH
Confidence 99999999988876 4565544443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=4.3e-18 Score=168.77 Aligned_cols=423 Identities=9% Similarity=-0.017 Sum_probs=310.5
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchh
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 127 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (499)
+.++.-..-.+.+....|+.++|+.++.++... -......+..+..++.+.|++++|.++++...+..+ .+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~ 84 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDD 84 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH
Confidence 345566667788888999999999866555431 123455688899999999999999999999887654 4456
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 010853 128 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 207 (499)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (499)
.+..+..++...|++++|...++++.+.... +.. +..+..++...|+.++|+..++++.+... .+...+..+...+.
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~ 161 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 6778888999999999999999999987332 455 88888999999999999999999988542 24455566777888
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCch------hhHHHHHHHHh-----ccCCh---HHHHHHHHHHHhc-CCCCCHh-hHH-
Q 010853 208 GESDLEKARKVLQFMLSKKDVDRT------RICNIYLRALC-----LIKNP---TELLNVLVFMLQT-QCQPDVI-TLN- 270 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~- 270 (499)
..+..+.|...++.+.. .|+. ......+.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 162 ~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 162 NNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 89999999999987653 2221 01112222222 12233 6788888888754 2223221 111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC--chhhHHHHH
Q 010853 271 ---TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP--GIVTYNAVL 345 (499)
Q Consensus 271 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll 345 (499)
..+..+...|++++|+..|+.+.+.+...|+. ....+...|...|++++|+..|.+++......+ .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11334567799999999999998865312332 223357789999999999999999765432221 123455666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-----------CcC---HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGV-----------VAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
.++...|++++|..+++.+.+... .|+ ...+..+...+...|++++|..+++++....+. +...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 678899999999999999987531 122 234566778889999999999999999876544 67789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
..+...+...|++++|++.+++.....+ .+...+......+...|++++|..+++++++ ..|+......+-+.+
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999999999998752 2456677777789999999999999999988 567766665555544
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=9.9e-18 Score=163.29 Aligned_cols=414 Identities=12% Similarity=-0.047 Sum_probs=261.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHH
Q 010853 55 SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 134 (499)
Q Consensus 55 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 134 (499)
......+.+.|++++|+..|.+.+.. .|+...|..+..++.+.|++++|++.++...+.++ .+..++..+..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~-------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~ 202 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC-------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 34455666666666666666555432 23445566666666666666666666666665543 33445555666
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEK 214 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 214 (499)
++...|++++|..-|......+...+. ....++..+.. ..+........+.. +++...+..+...+ .......
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~ 275 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKP 275 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCc
Confidence 666666666666666554433211111 11111111111 11111122221211 11122222221111 1111111
Q ss_pred HHHHHHHHHhCCCCCch-hhHHHHHHH---HhccCChHHHHHHHHHHHhcC-C-CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 010853 215 ARKVLQFMLSKKDVDRT-RICNIYLRA---LCLIKNPTELLNVLVFMLQTQ-C-QPDVITLNTVINGFCKMGRIEEALKV 288 (499)
Q Consensus 215 a~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (499)
...-+....+ ..+.. ..+..+... ....+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..
T Consensus 276 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1111111110 01110 011111111 123478899999999998765 2 23456678888889999999999999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 289 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
|++..... +.....|..+...+...|++++|...+.+.+... +.+...|..+...+...|++++|...|++..+..
T Consensus 354 ~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 354 LSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99998764 4457788889999999999999999999987654 3456788888899999999999999999999875
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh----
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV---- 444 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---- 444 (499)
+.+...+..+..++.+.|++++|...+++.....+. +...|+.+..++...|++++|++.|++........+..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 556778888899999999999999999999865433 67789999999999999999999999998864331111
Q ss_pred --hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 445 --CYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 445 --~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
.++..+..+...|++++|.+++++..+. .|+ ...+..+..++.+.|+
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccC
Confidence 1222222344579999999999998874 454 4567888888888887
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=4.1e-17 Score=162.02 Aligned_cols=173 Identities=12% Similarity=-0.021 Sum_probs=108.2
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 391 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (499)
+...|++++|...+.+++.. +|+...+..+..++.+.|++++|...++...+.. +.+...+..+.......|++++
T Consensus 519 l~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHH
Confidence 34566666666666654322 2333334444555666667777777776666553 2233333333334445577777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|...+++..+.. |+...|..+..++.+.|++++|...+++.....+. +...++.+..++...|++++|+..+++..+
T Consensus 595 Al~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777776543 34666777777777788888888888877776432 556667777777778888888888877776
Q ss_pred CCCCC-CHhHHHHHHHHhcccCC
Q 010853 472 NGLNP-DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 472 ~g~~p-~~~~~~~l~~~~~~~g~ 493 (499)
..| +...+..+..++...|+
T Consensus 672 --l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 672 --GLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred --hCCCCHHHHHHHHHHHHHCCC
Confidence 344 45566666677766665
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1e-17 Score=156.30 Aligned_cols=451 Identities=11% Similarity=0.030 Sum_probs=300.7
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhH
Q 010853 30 GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNE 109 (499)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (499)
..+..+..++...-... +.|++..+.|.+.+..-|++..+..+...++..+.. -..-...|..+.+++-..|++++
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~---~~~~aes~Y~~gRs~Ha~Gd~ek 325 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN---KSIKAESFYQLGRSYHAQGDFEK 325 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhhccHHH
Confidence 44556666666655432 457889999999999999999999988888776532 23345678889999999999999
Q ss_pred HHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC----ChhHHHHHHH
Q 010853 110 VFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG----GCMRAYQLLE 185 (499)
Q Consensus 110 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~ 185 (499)
|...|....+.........+.-+...+.+.|+.+.+...|+.+.+... -+..+...|...|...+ ..+.|..++.
T Consensus 326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 999999887766433244556688999999999999999999988732 24566777777776664 4566777777
Q ss_pred HHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH----HhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-
Q 010853 186 EGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM----LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT- 260 (499)
Q Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 260 (499)
+..+.- +.|...|..+...+.... ...++..|..+ ...+..+.+.+.|.+...+...|++++|...|...+..
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 766543 346667777776665543 33336655544 34556678889999999999999999999999887655
Q ss_pred --CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 261 --QCQPDV------ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 261 --~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
...++. .+--.+..++-..++.+.|.+.+..+.+.. +.-+..|..+.......+...+|...+.+.+...
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 222232 223345556666778888888888888754 3334455555544445677778888888877666
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHhHHHHHHHHHh------------cCChhhHHHHHHHH
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCE------------SNQLDEAKRFWDDI 399 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~ 399 (499)
...|+..+ .+...+.....+..|.+-|..+.+.- ..+|..+.-.|.+.|.. .+..++|.++|.++
T Consensus 561 ~~np~ars--l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 561 SSNPNARS--LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cCCcHHHH--HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 55555433 34445566666666666555544321 12455555555554432 23456677777776
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCCCH
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-KNGLNPDA 478 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~p~~ 478 (499)
++..+. |.+.-|.+.-+++..|++.+|..+|.+.++... -...+|..+..+|...|++..|+++|+... +..-.-+.
T Consensus 639 L~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~ 716 (1018)
T KOG2002|consen 639 LRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS 716 (1018)
T ss_pred HhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 655544 666666677777777777777777777776543 244566777777777777777777776643 34434456
Q ss_pred hHHHHHHHHhcccCC
Q 010853 479 VTWRILDKLHGNRGN 493 (499)
Q Consensus 479 ~~~~~l~~~~~~~g~ 493 (499)
.....|.+++.+.|.
T Consensus 717 ~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGK 731 (1018)
T ss_pred HHHHHHHHHHHHhhh
Confidence 666666666666554
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=1.5e-16 Score=158.17 Aligned_cols=220 Identities=13% Similarity=-0.016 Sum_probs=168.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 010853 246 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL 325 (499)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 325 (499)
++++|...+.+..... |+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+
T Consensus 491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344555444444332 33332223344446789999999999987654 344555667778889999999999999
Q ss_pred HHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC
Q 010853 326 YQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI 405 (499)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 405 (499)
.+.+... +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++.....+.
T Consensus 566 ~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd 641 (987)
T PRK09782 566 QQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN 641 (987)
T ss_pred HHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9876543 233333333444455669999999999999986 457888999999999999999999999999877654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 406 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
+...++.+..++...|++++|++.+++..+..+. +...+..+..++...|++++|+..+++..+ +.|+.
T Consensus 642 -~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~ 710 (987)
T PRK09782 642 -NSNYQAALGYALWDSGDIAQSREMLERAHKGLPD-DPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ 710 (987)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence 6678889999999999999999999999987543 677899999999999999999999999987 45654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=7.5e-17 Score=150.57 Aligned_cols=459 Identities=10% Similarity=0.018 Sum_probs=337.8
Q ss_pred CCCCChhhHHHH-HHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC
Q 010853 14 SPFPPVASLTSA-LAITGEMDVAYKVFDEMRHCGVLP--NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 90 (499)
Q Consensus 14 ~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 90 (499)
...|++.+...- +.-.|++..+..+.+.+....... -...|..+.+++-..|++++|...|.+....-+.. -
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----F 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----c
Confidence 445655444333 378899999999999998754211 23458889999999999999999886665432221 1
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcC----ChhhHHHHHHHHHhcCCCCChhhHHH
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG----RNHGASRVVYVMRKRGLTPSLVSYNS 166 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~g~~p~~~~~~~ 166 (499)
...+.-+...+.+.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+..+.-+ .|...|-.
T Consensus 342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~ 419 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLE 419 (1018)
T ss_pred cccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHH
Confidence 22334588999999999999999999988764 44556666777776664 45777777777776642 36777877
Q ss_pred HHHHHHccCChhHHHHHHHHHH----hCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCc------hhh
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGI----QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK---KDVDR------TRI 233 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~ 233 (499)
+...+... +...++..|.... ..+..+.+...|.+.......|++..|...|+..... ...++ ..+
T Consensus 420 laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~ 498 (1018)
T KOG2002|consen 420 LAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL 498 (1018)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH
Confidence 77776544 4444476665443 4555678889999999999999999999999988754 11122 223
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
-..+...+-..++++.|.+.|..+.+..+. -+..|..+.......+...+|...+.++.... ..++..++.+...+.
T Consensus 499 ~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~arsl~G~~~l 575 (1018)
T KOG2002|consen 499 KYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARSLLGNLHL 575 (1018)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHHHHHHHHH
Confidence 445566667788999999999999887432 23344444433344578889999999998766 455566667777888
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh------------cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR------------LRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
+...+..|.+-|..........+|..+.-.|.+.|.. .+..++|+++|.+..+.. +-|...-+.+.-
T Consensus 576 ~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgi 654 (1018)
T KOG2002|consen 576 KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGI 654 (1018)
T ss_pred hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhh
Confidence 8888888888777766665556777777677775543 345788999999998876 668888899999
Q ss_pred HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChH
Q 010853 382 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 460 (499)
+++..|++..|..+|.++.+.... ...+|-.+.++|..+|++..|+++|+...+. ....+......|.+++...|++.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999865542 4457889999999999999999999987654 44557788999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 461 EAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
+|.+.+.........-....++..+
T Consensus 734 eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHHHHHHHHHHhCCccchHHhHHHH
Confidence 9999998887743333344455443
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=5.3e-18 Score=145.13 Aligned_cols=464 Identities=11% Similarity=0.064 Sum_probs=320.1
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYS-VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
...+.+.|..+....+|+..|+-+.+...-||...+. .+...+.+.+.+.+|+..|+..+.+.|.- +........+.+
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~ni 282 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhc
Confidence 3445555677788889999999999888778776554 46788999999999999999888887754 334445567777
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh------------hHH
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV------------SYN 165 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~------------~~~ 165 (499)
.-.+.+.|+++.|+..|+...+.. |+..+-..|+-++.--|+.++..+.|.+|......||.. ..+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 778889999999999999988765 665554446666667799999999999998754333322 222
Q ss_pred HH-----HHHHHccC--ChhHHHHHHHHHHhCCCCCCcc-----cHHH----------------HHHHHhcCCCHHHHHH
Q 010853 166 SI-----VHGLCKHG--GCMRAYQLLEEGIQFGYLPSEH-----TYKV----------------LVEGLCGESDLEKARK 217 (499)
Q Consensus 166 ~l-----~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-----~~~~----------------l~~~~~~~~~~~~a~~ 217 (499)
.- ++.+-+.+ +-++++-.-.+++.--+.|+-. .... -.--+.+.|+++.|++
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie 440 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE 440 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence 21 22222211 1122222222222222222211 0000 1223678999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHh--ccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 218 VLQFMLSKKDVDRTRICNIYLRALC--LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
+++-+.+++.......-+.+...+. .-.++..|.++-+...... +-+......-.+.....|++++|.+.+++....
T Consensus 441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 9998877655544444443333222 2456677777766655332 112222222233344578999999999998854
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHh
Q 010853 296 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 375 (499)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (499)
.. .-....-.+.-.+-..|+.++|++.|.++.. -+..+......+...|-...+..+|++++.+.... ++.|+.+
T Consensus 520 da--sc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 520 DA--SCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred ch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 31 1122222233456678999999999977421 12345566677788888899999999999887765 5778899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-H
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-C 454 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 454 (499)
++-|...|-+.|+-..|.+.+-+--. -++-+..+...|...|....-+++++.+|++..- +.|+..-|..++..| .
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence 99999999999999999887655432 2445788888899999999999999999998754 589999999988765 5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCCc
Q 010853 455 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGNDF 495 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 495 (499)
+.|++.+|.++++...+. ++-|..+...|++.++..|-..
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 689999999999998653 7778999999999999888643
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=4.7e-15 Score=144.56 Aligned_cols=414 Identities=12% Similarity=0.043 Sum_probs=301.7
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
+..++.++...|+.++|+..+++..... +.+......+...+...|++++|.++++++++.-|. ++..+..++
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~------n~~~l~gLa 143 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT------NPDLISGMI 143 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHH
Confidence 4466777789999999999999998321 122333333466888899999999999998876544 345666788
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 178 (499)
..+...++.++|++.++.+....+ +...+..++..+...++..+|++.++++.+.... +...+..+..++.+.|-..
T Consensus 144 ~~y~~~~q~~eAl~~l~~l~~~dp--~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~ 220 (822)
T PRK14574 144 MTQADAGRGGVVLKQATELAERDP--TVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVE 220 (822)
T ss_pred HHHhhcCCHHHHHHHHHHhcccCc--chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcH
Confidence 899999999999999999988764 4445544555555566776799999999998433 5677788899999999999
Q ss_pred HHHHHHHHHHhCCCCCCcc------cHHHHHHHH---h--cCCC---HHHHHHHHHHHHhC-CCCCc-----hhhHHHHH
Q 010853 179 RAYQLLEEGIQFGYLPSEH------TYKVLVEGL---C--GESD---LEKARKVLQFMLSK-KDVDR-----TRICNIYL 238 (499)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~--~~~~---~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~ 238 (499)
.|+++..+-... +.+... ....+++.- . ...+ .+.|..-++.+... +..|. .....-.+
T Consensus 221 ~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl 299 (822)
T PRK14574 221 PALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRL 299 (822)
T ss_pred HHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 999887653211 111100 011111110 0 1122 34455555555532 12232 22344567
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCCHHHHHHHHHHHHc
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----CAPDAVTFTTIIFGLLN 314 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~ 314 (499)
-++...++..++.+.++.+...+.+....+-..+.++|...+++++|+.+++.+..... .+++......|..++..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 78889999999999999999988766667888999999999999999999999976431 12344446789999999
Q ss_pred cCCHHHHHHHHHHHhccCCC----------CCch---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 315 VGRIQEALNLLYQVMPQRGY----------SPGI---VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
.+++++|..+++++...... .|+. ..+..++..+...|+..+|++.++++.... |-|......+..
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~ 458 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALAS 458 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 99999999999996642220 1221 234456677889999999999999998875 778999999999
Q ss_pred HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 382 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
.+...|.+.+|++.++.+....+. +..+....+.++...|++++|..+.+.+.+. .|+.....
T Consensus 459 v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~ 521 (822)
T PRK14574 459 IYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQ 521 (822)
T ss_pred HHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHH
Confidence 999999999999999887655333 5667788889999999999999999999886 44444333
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=3.4e-15 Score=127.10 Aligned_cols=428 Identities=16% Similarity=0.138 Sum_probs=274.0
Q ss_pred hhHHHHH--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHh--ccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 20 ASLTSAL--AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL--RTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 20 ~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
.+-+.++ ..+|.+.++.-+|+.|...|+..++..--.|++... ...++.-|. ++-|-.|...+.- ++.+
T Consensus 117 ~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E---~~~Fv~~~~~~E~--S~~s-- 189 (625)
T KOG4422|consen 117 ETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAE---WEEFVGMRNFGED--STSS-- 189 (625)
T ss_pred cchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchh---HHHHhhccccccc--cccc--
Confidence 3445555 788999999999999999998777777666665433 233333222 1222233322111 1111
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.+.|.+.+ -+|+...+ ...++..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-..
T Consensus 190 ------WK~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~ 256 (625)
T KOG4422|consen 190 ------WKSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV 256 (625)
T ss_pred ------cccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc
Confidence 12343333 34444443 235777788888887777888888877777766777778887776654332
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHH----HHHHHHHHhCCCCCchhhHHHHHHHHhccCChHH-H
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA----RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE-L 250 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a 250 (499)
+ .+++.+|....+.||..|+|.++.+..+.|+++.| .+++.+|.+-|+.|...+|..++..+++.+++.+ +
T Consensus 257 ~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~a 332 (625)
T KOG4422|consen 257 G----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVA 332 (625)
T ss_pred c----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhh
Confidence 2 67777787777788888888888888888876654 4566667777888888888888888777777654 3
Q ss_pred HHHHHHHHhc----CC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCC---HHHHHHHHHHHHccC
Q 010853 251 LNVLVFMLQT----QC----QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPD---AVTFTTIIFGLLNVG 316 (499)
Q Consensus 251 ~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~---~~~~~~l~~~~~~~~ 316 (499)
..++.++... .+ +.|...|...+..|....+.+.|.++-.-+.... .+.|+ ..-|..+....++..
T Consensus 333 s~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 333 SSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 3344444321 12 2244556677777888888888887766554321 11222 334566677777777
Q ss_pred CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC-Ch------
Q 010853 317 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QL------ 389 (499)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~------ 389 (499)
..+.-...|+.+. -.-+-|+..+...++++..-.|.++-.-+++..+...|...+......++..+++.. +.
T Consensus 413 s~~~~~~~Y~~lV-P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 413 SIDVTLKWYEDLV-PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHhc-cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 8888888887754 445567777888888888888888888888888887775555554444444444433 11
Q ss_pred --------------hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHH---HHHH
Q 010853 390 --------------DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYN---VVID 451 (499)
Q Consensus 390 --------------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~l~~ 451 (499)
+..+..-.++.+. .......+.+.-.+.+.|..++|.++|..+...+ --|-....+ -++.
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 1111111222333 3345567888888999999999999999986543 223333444 5666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC
Q 010853 452 GACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
.-.+.++...|..+++-|...+.
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCc
Confidence 67778889999999999876553
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=7.9e-15 Score=124.94 Aligned_cols=363 Identities=14% Similarity=0.134 Sum_probs=242.3
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchh
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 127 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (499)
+.+..++..+|.++++....++|.++|.+.- .. ....+..+||.+|.+-.-.. -.+++.+|......||..
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~----~~-k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHR----AA-KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLF 274 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHH----Hh-hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchH
Confidence 3467889999999999988999988665442 22 56678888888887644332 267888888888889999
Q ss_pred hHHHHHHHHHhcCChhh----HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH-HHHHHHHHHhC----CCCC----
Q 010853 128 ACGHMIDSLCRSGRNHG----ASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR-AYQLLEEGIQF----GYLP---- 194 (499)
Q Consensus 128 ~~~~l~~~~~~~~~~~~----A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~---- 194 (499)
++|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++|
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 99999999999998765 56777888999999999999999998888877654 55555555432 2333
Q ss_pred CcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCC----CCc---hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHh
Q 010853 195 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKD----VDR---TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI 267 (499)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (499)
|...|...+..|.+..+.+.|.++..-+..... .++ ..-|..+....|.....+....+|+.|.-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 345567778888888888888888776654321 122 2245666777788888888888888888777777888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh---hHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV---TYNAV 344 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l 344 (499)
+...++++..-.|.++-..+++.++..-+. +++..+ -++++.. +-.....|+.. -+...
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh------t~r~~l-----------~eeil~~-L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGH------TFRSDL-----------REEILML-LARDKLHPLTPEREQLQVA 496 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhh------hhhHHH-----------HHHHHHH-HhcCCCCCCChHHHHHHHH
Confidence 888888888888888888888888776442 121111 1122222 22222223222 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCCCHHHHH---HHHHHHHh
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYA---AMIKGLCR 420 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~---~li~~~~~ 420 (499)
..-|+ ..-.+.....-.++.+. .......+.++-.+.+.|..++|.+++..+.+.+ -.|-....| .+++.-..
T Consensus 497 ~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 497 FAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 22221 11122222233344444 3455566777778899999999999999885443 333344445 45556667
Q ss_pred cCCHHHHHHHHHHHHHcCCC
Q 010853 421 SGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~ 440 (499)
.++...|...++-|...+..
T Consensus 574 ~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCCHHHHHHHHHHHHHcCch
Confidence 77888898888888766533
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=3.5e-13 Score=121.08 Aligned_cols=455 Identities=11% Similarity=0.044 Sum_probs=240.6
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
|+.+.+=.+.......+.|+-++.+..+.- +-+.. |..++++...|+.|..++.+.-+.+ +-+...|.+
T Consensus 377 P~sv~LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~i------ptd~~IWit 445 (913)
T KOG0495|consen 377 PRSVRLWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREII------PTDREIWIT 445 (913)
T ss_pred CchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhC------CCChhHHHH
Confidence 444444444444445555666666665541 12222 2333444455555655544443332 224455555
Q ss_pred HHHHHHcCCCHhHHHHHHHh----ccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHH
Q 010853 97 LVDSLCREGYVNEVFRIAED----MPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LVSYNSIVHG 170 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~ 170 (499)
....--.+|+.+...+++++ +...|+..+...|..=...|-..|..-.+..+.......|+.-. -.||..-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 55555556666555555443 34445555555555555555555555555555555555554421 2355555555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
|.+.+.++-|..+|....+. .+-+...|......--..|..+....+|++... ..+-....|......+-..|+...|
T Consensus 526 ~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~-~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE-QCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcchhHHHHHHHHHHhcCCcHHH
Confidence 66666666666666555442 112334444444444455555666666655553 2333344455555555555666666
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 330 (499)
..++....+..+. +...|-.-+.......+++.|..+|.+.... .|+...|..-+..--..++.++|.+++++.++
T Consensus 604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk 679 (913)
T KOG0495|consen 604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALK 679 (913)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH
Confidence 6666555555433 4455555555555555666666666555542 34555555444444455555666666555543
Q ss_pred cCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH
Q 010853 331 QRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV 410 (499)
Q Consensus 331 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 410 (499)
.. +.-...|..+.+.+-+.++.+.|.+.|..-.+. ++-....|-.|...--+.|.+-+|+.++++..-.++. +...
T Consensus 680 ~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~l 755 (913)
T KOG0495|consen 680 SF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALL 755 (913)
T ss_pred hC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchh
Confidence 32 222334445555555555555555555544433 1222333444444444555555666666555544443 4555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCCCChhhHHHHHHHHHhcCChHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDS-----------------------------GVTPNIVCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~~~l~~~~~~~g~~~~ 461 (499)
|-..|+.-.+.|+.+.|..+..+.++. ...-|++..-.+...|-...++++
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 555555555555555555544443321 123355566666677777778888
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCCC
Q 010853 462 AYQILREMRKNGLNPD-AVTWRILDKLHGNRGND 494 (499)
Q Consensus 462 a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~ 494 (499)
|.+.|.+..+. .|| -.+|.-+.+.+.++|.+
T Consensus 836 ar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 836 AREWFERAVKK--DPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHHHHHcc--CCccchHHHHHHHHHHHhCCH
Confidence 88888888773 344 46777788888888754
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.5e-13 Score=116.53 Aligned_cols=425 Identities=13% Similarity=0.106 Sum_probs=283.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
..++++..|..+|++.+..+ ..++..|-..+.+-.++.....|+.++...+..+|.. | ..|.--+..--..|+
T Consensus 84 esq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-----d-qlWyKY~ymEE~LgN 156 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-----D-QLWYKYIYMEEMLGN 156 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-----H-HHHHHHHHHHHHhcc
Confidence 66788899999999999865 4677788888888889999999999888888777653 2 233334444456689
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
+.-|.++|++..+ ..|+..+|.+.|..-.+-+.++.|..+++...-. .|++.+|--..+.-.++|+...|..+|+.
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 9999999998765 4488899999999999999999999999988765 68888888888888888988888888887
Q ss_pred HHhC-CC-CCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhC---------------------------------------
Q 010853 187 GIQF-GY-LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSK--------------------------------------- 225 (499)
Q Consensus 187 ~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------------------- 225 (499)
.++. |- ..+...+.+....-..+..++.|.-+|+-.+..
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 7653 10 011223333333333455566666555544421
Q ss_pred ----CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHh-hHHHHHH--------HHHhcCCHHHHHHHHHHH
Q 010853 226 ----KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVI-TLNTVIN--------GFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 226 ----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~--------~~~~~~~~~~a~~~~~~~ 292 (499)
..+.+-.+|-.++..-...|+.+...++++.....-++.+.. .|...|- .-....+.+.+.++++..
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 122333455555555556666666666666665543221111 1111111 112345666667777666
Q ss_pred hhCCCCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 293 VAGKFCAPDAVTFTTIIFGLL----NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
.+ .++....||..+--.|+ ++.+...|.+++-..+ |.-|...+|...|..-.+.+.++.+..+|++..+.+
T Consensus 393 l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 393 LD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred Hh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 65 22455556555544443 4667777777776643 556777788888877778888888888888888876
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
+-+..+|......-...|+.+.|..+|+-++... .......|.+.|+.-...|.++.|..+++++++.. +....|.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 5577788877777778888888888888876432 22344467778887788888888888888888752 3334554
Q ss_pred HHHHHHH-----hcC-----------ChHHHHHHHHHHH
Q 010853 448 VVIDGAC-----KLS-----------MKREAYQILREMR 470 (499)
Q Consensus 448 ~l~~~~~-----~~g-----------~~~~a~~~~~~m~ 470 (499)
+...--. ..+ ....|..+|+++.
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 4443222 222 4456777777653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=6.6e-13 Score=123.85 Aligned_cols=433 Identities=14% Similarity=0.128 Sum_probs=282.1
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.-.|+.++|.+++.++++.. +.+...|.+|...|-+.|+.+++......+ ..+ .+-|...|..+.....+.|+
T Consensus 150 farg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llA-AHL-----~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLA-AHL-----NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHH-Hhc-----CCCChHHHHHHHHHHHhccc
Confidence 45599999999999999975 457889999999999999999997754222 111 22255788888899999999
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH----HHHHHHHHccCChhHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY----NSIVHGLCKHGGCMRAYQ 182 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~----~~l~~~~~~~~~~~~a~~ 182 (499)
+++|.-.|.+..+..+ ++....---...|-+.|+...|...|.++.......|..-+ -.+++.+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998887 34344444667889999999999999999887432222222 234566777777788888
Q ss_pred HHHHHHhC-CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC---------------------------CchhhH
Q 010853 183 LLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV---------------------------DRTRIC 234 (499)
Q Consensus 183 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~~ 234 (499)
.++..... +-..+...++.++..+.+...++.+............. ++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 88877652 22345677888888888888888888877776541111 11112
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 235 NIYLRALCLIKNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 235 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
-.++-++...+..+....+...+.+.. +.-+...|..+..+|...|++..|+.+|..+..... .-+...|-.+..+|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchhhhHHHHHHH
Confidence 122334444444455555555555544 333455677777778888888888888887776543 44566777777788
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCCcCHHhHHHHHHHHH
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG--------IGVVADSTTYAIVIDGLC 384 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ 384 (499)
...|.+++|.+.|+..+...... .-.-..|-..+.+.|+.++|.+.+..+.. .+..|+..........+.
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~--~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDN--LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCc--hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 88888888888777766554222 22333455556777888888777777532 122333333334444455
Q ss_pred hcCChhhHHHHHHHHh---------------------------------------------------------------c
Q 010853 385 ESNQLDEAKRFWDDIV---------------------------------------------------------------W 401 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~---------------------------------------------------------------~ 401 (499)
..|+.++=..+...++ .
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 5555443222211110 0
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 402 PSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPNI---VCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 402 ~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+...+. ..+..++.++++.+++++|..+...+..... .++. ..=...+.+.+..+++..|...++.|..
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~ 694 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVIT 694 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0111111 1345667788889999999999888876532 1111 1223455667788999999999988865
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=4.5e-13 Score=124.93 Aligned_cols=351 Identities=13% Similarity=0.113 Sum_probs=220.0
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHH
Q 010853 138 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARK 217 (499)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (499)
..|++++|.+++.+..+.... +...|.+|..+|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 336777777777776666433 55666677777777776666666554432221 2244566666666666677777777
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 218 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL----NTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
+|.+.++. .+++...+---...|-+.|+...|..-+.++.+..++.|..-+ ..+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQA-NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhc-CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77766643 3333444444555666667777777776666665442222222 223444555566666666666665
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc--------------------------cCCCCCchhhHHHHHHH
Q 010853 294 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP--------------------------QRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~~~~~~ll~~ 347 (499)
.......+...++.++..+.+...++.+...+..... ..+..++... -.++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 5333244455556666666666666666665544322 0111222222 123334
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
+.+.+..+....+...+.+..+ .-+...|.-+..+|...|++.+|..++..+......-+..+|-.+.++|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 5566666677777777776663 34566788899999999999999999999987666667788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHhcccCC
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR--------KNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
+|.+.++..+...+. +...-..|...+-+.|++++|.++++.+. ..+..|+....-.....+...|+
T Consensus 467 ~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 999999999886422 44555667777889999999999998864 22334444444444444444443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.2e-16 Score=140.04 Aligned_cols=262 Identities=17% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCC-CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 010853 201 VLVEGLCGESDLEKARKVLQFMLSKK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 279 (499)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (499)
.+...+...|++++|.++++...... .+.+...|..+.......++++.|...++.+...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666677777777775443333 2334445555555666667777777777777665433 45566666666 678
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 010853 280 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 359 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 359 (499)
+++++|.++++..-+. .++...+..++..+.+.++++++.+++.+.......+.+...|..+...+.+.|+.++|..
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888776544 3456667777888888888888888888865444455677778888888888899999999
Q ss_pred HHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 360 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
.+++..+.. |.|......++..+...|+.+++.++++...+.. ..|...+..+..+|...|++++|+..|++....+
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 998888864 4457778888888888888888888887776543 3355567888888888899999999998888764
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 440 TPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+.|+.....+..++...|+.++|.++.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3377788888888888999999988887764
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.2e-12 Score=109.17 Aligned_cols=449 Identities=11% Similarity=0.034 Sum_probs=293.2
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHH-----------HHHhccCCHHHHHHHHHHHHHHhhhc
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLT--YSVLV-----------RGVLRTRDVERANVLMFKLWERMKEE 84 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~ 84 (499)
+..++...+..+..++.|.-.++...+. .+.+. |...+ ........+..-...+..+-..+...
T Consensus 80 ~~y~laks~fd~kEf~Raa~fL~~~~s~---k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le~~ 156 (559)
T KOG1155|consen 80 DIYLLAKSYFDCKEFERAAFFLQNCKSK---KSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLESK 156 (559)
T ss_pred chhhhHhhhhhhHHHHHHHHHHHhcchH---HHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHHHH
Confidence 4566777778888888888777766541 11111 11111 11111122222222222222222221
Q ss_pred -cCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 010853 85 -EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 163 (499)
Q Consensus 85 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~ 163 (499)
.+..-|...+....-.+.+.|..+.|...|......-+ ..|.+-+....-..+.+.+ ..+... ...|...
T Consensus 157 ~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P----~~W~AWleL~~lit~~e~~----~~l~~~-l~~~~h~ 227 (559)
T KOG1155|consen 157 HCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP----WFWSAWLELSELITDIEIL----SILVVG-LPSDMHW 227 (559)
T ss_pred HhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC----cchHHHHHHHHhhchHHHH----HHHHhc-CcccchH
Confidence 12333445445555556677777888777777654332 2333333322222222222 222211 1112221
Q ss_pred HH--HHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---chhhHHHHH
Q 010853 164 YN--SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD---RTRICNIYL 238 (499)
Q Consensus 164 ~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 238 (499)
.. .+..++-...+.+++.+-.+.....|...+...-+....+.....|+++|+.+|+++.+. .+- +..+|+.++
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHHH
Confidence 11 244566666788888888888888887655555555566667888999999999999865 332 334555554
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 318 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (499)
-.-..... +..+.+-...--+--+.|.-.+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+.
T Consensus 307 Yv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 307 YVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhccc
Confidence 43222111 1111111111012234566778888899999999999999999876 56788899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDD 398 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (499)
..|++-+..+++-. +.|-..|-.+.++|.-.+.+.=|+-.|++..+.. +-|...|..|..+|.+.++.++|+..|..
T Consensus 381 ~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999987655 6688899999999999999999999999999875 66889999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 399 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----G-VTP-NIVCYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
....+.. +...+..|...|-+.++.++|...|++-++. | +.| .......|..-+.+.+++++|.........
T Consensus 458 ai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~- 535 (559)
T KOG1155|consen 458 AILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK- 535 (559)
T ss_pred HHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-
Confidence 9876644 6678999999999999999999998887652 3 222 222333356667889999999887776655
Q ss_pred CCCCCHhHHHHHHHHhccc
Q 010853 473 GLNPDAVTWRILDKLHGNR 491 (499)
Q Consensus 473 g~~p~~~~~~~l~~~~~~~ 491 (499)
| .+...--+.|++-+.+.
T Consensus 536 ~-~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 536 G-ETECEEAKALLREIRKI 553 (559)
T ss_pred C-CchHHHHHHHHHHHHHh
Confidence 3 67777777777766554
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=3.3e-11 Score=108.70 Aligned_cols=443 Identities=12% Similarity=0.020 Sum_probs=337.1
Q ss_pred CCChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 16 FPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
.|...-+-.+|++...++.|..++....+. ++.++.+|.+....--.+|+.+....+..+-+..+... ++..+...|-
T Consensus 406 cp~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl 483 (913)
T KOG0495|consen 406 CPQSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWL 483 (913)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHH
Confidence 344555666778889999999999999885 56688899998888888999999999888888888776 8889999898
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCC--chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 173 (499)
.-...|-..|.+-.+..+......-|+.. -..+|..-...|.+.+.++-|..+|....+.-.. +...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHh
Confidence 88888888899888888888877666532 2457777788888899999999988888776322 55667777666667
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.|..++...+|++.... ++-....|-.....+-..|+...|..++.+..+. .+.+..+|-..+........++.|..+
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~-~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 78888888888888774 2334455666666777788888888888888754 333666888888888888888888888
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC
Q 010853 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG 333 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 333 (499)
|.+.... .|+...|.--+....-.+..++|.+++++..+.. +.-...|-.+.+.+-+.++.+.|.+.|..-.+ .
T Consensus 641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~ 714 (913)
T KOG0495|consen 641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--K 714 (913)
T ss_pred HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--c
Confidence 8877665 3466666666666666788888888888887753 33356677777888888888888888866432 2
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC-----------
Q 010853 334 YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----------- 402 (499)
Q Consensus 334 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------- 402 (499)
++.....|..+...--+.|.+-+|..+++..+-.+ +-+...|-..|++-.+.|+.+.|..+..++.+.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEa 793 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEA 793 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHH
Confidence 34445566666666667778888888888877765 557777888888888888888877766555321
Q ss_pred ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 010853 403 ------------------SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 403 ------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
....|.++.-.+...|....++++|.+.|.+.++.+.. +..+|..+...+.++|.-+.-.+
T Consensus 794 I~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred HHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHHHHHhCCHHHHHH
Confidence 12346667777778888888999999999999987643 67899999999999999988899
Q ss_pred HHHHHHH
Q 010853 465 ILREMRK 471 (499)
Q Consensus 465 ~~~~m~~ 471 (499)
++.....
T Consensus 873 v~~~c~~ 879 (913)
T KOG0495|consen 873 VLKKCET 879 (913)
T ss_pred HHHHHhc
Confidence 9988775
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=9.6e-13 Score=120.67 Aligned_cols=253 Identities=11% Similarity=0.061 Sum_probs=152.5
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHH--HHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICN--IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 284 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (499)
...|+++.+...+.++.+ ..|+..... .....+...|+++.|...++.+.+..+. +......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 455555566555555542 222222111 2234555556666666666665555433 45566666677777777777
Q ss_pred HHHHHHHHhhCCCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDA------VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
|.+++..+.+.....+.. .+|..++.......+.+...+++.+.-. ..+.++.....+...+...|+.++|.
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 777777776655422221 1222333333333444455555544221 12345666667777777888888888
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.++.+..+. +++.... ++.+....++.+++.+..+...+..+. |...+..+.+.+.+.|++++|.+.|+.+.+.
T Consensus 284 ~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~- 357 (398)
T PRK10747 284 QIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ- 357 (398)
T ss_pred HHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 888777763 4444322 223334557778888888777765443 5566777788888888888888888888775
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 439 VTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|+...+..+...+.+.|+.++|.+++++...
T Consensus 358 -~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 -RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 57777777778888888888888888777643
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.7e-16 Score=135.26 Aligned_cols=259 Identities=16% Similarity=0.141 Sum_probs=60.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
.+...+.+.|++++|+++++...... ...|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555666666666666664433332 1223334444444555566666666666666554322 34445555544 456
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKV 288 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (499)
+++++|.+++....+.. +++..+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666655443221 233334444444455555555555554443321 123344444444555555555555555
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 289 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
+++..+.. +.|......++..+...|+.+++..++....... +.|+..+..+..++...|+.++|..++++..+..
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 55554432 2234444444555555555554444444332221 2233334444444555555555555555544432
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDD 398 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 398 (499)
+.|+.+...+..++...|+.++|.++.++
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -TT-HHHHHHHHHHHT--------------
T ss_pred -ccccccccccccccccccccccccccccc
Confidence 33444444445555555555555544443
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=5.4e-13 Score=123.07 Aligned_cols=288 Identities=11% Similarity=0.031 Sum_probs=147.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHHHhcCCCHHHH
Q 010853 139 SGRNHGASRVVYVMRKRGLTPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH--TYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 139 ~~~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 215 (499)
.|+++.|.+.+....+. .|+.. .+-....+....|+++.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 45555555555544443 22222 22223344444555555555555544321 2222 122234444555555555
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHH-HHHHHH---HhcCCHHHHHHHHHH
Q 010853 216 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLN-TVINGF---CKMGRIEEALKVLND 291 (499)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~ 291 (499)
...++.+.+. .+.++.+...+...+...|+++++.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+..
T Consensus 173 l~~l~~l~~~-~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEM-APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5555555432 2333344555555555555555555555555555432 111111 111111 111222222223333
Q ss_pred HhhCCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh---HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 292 MVAGKF--CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT---YNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 292 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
+..... .+.+...+..+...+...|+.++|.+.+.+.++.. |+... ...........++.+.+.+.++...+
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 222210 01356666777777777777777777777765443 22221 11111122334666777777777666
Q ss_pred CCCCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 367 IGVVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 367 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 52 3344 556677777888888888888888543334456777777788888888888888888777543
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=1e-12 Score=121.29 Aligned_cols=292 Identities=13% Similarity=0.060 Sum_probs=202.9
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCccc-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 250 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 250 (499)
...|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+.+..+....+...+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3589999999999887664 344333 3444667778899999999999886433222223344457888889999999
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHH----HHHHHHHccCCHHHHHHHHH
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT----TIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 326 (499)
...++.+.+..+. +...+..+...+...|+++.|.+.+..+.+.+. .+...+. .........+..+++.+.+.
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999988754 667788889999999999999999999998763 2332221 11111122333333333343
Q ss_pred HHhccC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHh---HHHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 327 QVMPQR--GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT---YAIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 327 ~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
+..... ..+.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 333222 112367778888888999999999999999998864 33331 11122223345778888888888876
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 402 PSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 402 ~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5433 44 566788899999999999999999644444578888888999999999999999999988643
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=6.9e-13 Score=121.61 Aligned_cols=283 Identities=11% Similarity=0.035 Sum_probs=151.8
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH--HHHHHHHccCChhHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN--SIVHGLCKHGGCMRAY 181 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~ 181 (499)
.|+++.|.+.+....+....| ...+.....+..+.|+++.|.+.+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555443322111 111222233335556666666666655544 33332222 2244555556666666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchh-------hHHHHHHHHhccCChHHHHHHH
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR-------ICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
..++++.+.. +-+...+..+...|.+.|+++.|.+++..+.+....++.. .+..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666555533 1234455555555666666666666666655443332221 2222233333333444444555
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
+.+.+.- +.+......+...+...|+.++|.+++++..+. .++.... ++.+....++.+++++.+++..+..
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-- 324 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-- 324 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC--
Confidence 4443321 235556666777777777777777777776653 3443211 2223334477777777776655443
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445666667777777777777777777764 4666776777777777777777777777654
No 42
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.5e-12 Score=110.83 Aligned_cols=418 Identities=12% Similarity=0.039 Sum_probs=281.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
.+.+.+.+.+|++.|+-.+..-...+ ..+.+.+.-.+.+.|+++.|+.-|....+. .|+..+-..|+-+
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~-------~pn~~a~~nl~i~ 318 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE-------APNFIAALNLIIC 318 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh-------CccHHhhhhhhhh
Confidence 33677889999999988877532222 234555666788999999999988777653 3455555556667
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchh--------hHHHHHHHHHh---------cCC--hhhHHHHHHHHHhcCCCCCh
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEF--------ACGHMIDSLCR---------SGR--NHGASRVVYVMRKRGLTPSL 161 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~---------~~~--~~~A~~~~~~~~~~g~~p~~ 161 (499)
+..-|+.++..+.|..|......+|.. .-..|+.--.+ ..+ .++++-.--++..--+.|+-
T Consensus 319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f 398 (840)
T KOG2003|consen 319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF 398 (840)
T ss_pred heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence 777899999999999886543222211 11122222111 111 12222111222221223331
Q ss_pred hh---H----------H--------HHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHH--HHHHHHhcCCCHHHHHHH
Q 010853 162 VS---Y----------N--------SIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYK--VLVEGLCGESDLEKARKV 218 (499)
Q Consensus 162 ~~---~----------~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~ 218 (499)
.. | . .-..-+.++|+++.|.+++.-+.+..-+.-...-+ .++.......++..|..+
T Consensus 399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 11 1 0 01234668899999999998776543222111112 233333345578888888
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010853 219 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC 298 (499)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 298 (499)
-+..+.. ..-++.....-.......|++++|.+.+++.+..........||. .-.+-..|++++|++.|-++..--
T Consensus 479 ad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il-- 554 (840)
T KOG2003|consen 479 ADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL-- 554 (840)
T ss_pred HHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH--
Confidence 7777632 333333333334445668999999999999987644333334443 334567899999999998876432
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHH
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 378 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 378 (499)
..+......+.+.|-...+...|++++.+. ..-++.|+...+.+...|-+.|+-.+|.+.+-+--+. ++.+..+..-
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iew 631 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEW 631 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHH
Confidence 467778888899999999999999998663 3344667888899999999999999999887655443 4778899999
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
|...|....-++++..+|++.. -+.|+..-|..++..| .+.|++++|++++++.... ++-|..+...|++.+...|
T Consensus 632 l~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999999999999999884 3688999998888655 5679999999999998765 4558889999999888777
Q ss_pred Ch
Q 010853 458 MK 459 (499)
Q Consensus 458 ~~ 459 (499)
..
T Consensus 709 l~ 710 (840)
T KOG2003|consen 709 LK 710 (840)
T ss_pred ch
Confidence 53
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=5.3e-11 Score=103.38 Aligned_cols=418 Identities=10% Similarity=0.049 Sum_probs=249.0
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhH
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 129 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (499)
+...|....+--..++++.+|+++++..+.. -..+...|.--+..-.+...+..|..++++....-+..| ..|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdv------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlW 144 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDV------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLW 144 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHH
Confidence 4444555555555677888888877666542 233556677777888899999999999999876544333 355
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 130 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
--.+.+--..|++..|.++|+...+- .|+...|++.+..-.+.+.++.|..+|+..+- +.|++.+|......-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhc
Confidence 55666667789999999999998876 89999999999999999999999999999876 459999999999999999
Q ss_pred CCHHHHHHHHHHHHhC--CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 010853 210 SDLEKARKVLQFMLSK--KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD-VITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 286 (499)
|+...+..+|+...+. +.......+......-.++..++.|.-+|...++.-++.. ...|..+...--+.|+.....
T Consensus 221 g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIE 300 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIE 300 (677)
T ss_pred CcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999988753 1111223444444444456667777777766655432211 223333333333334433322
Q ss_pred HH--------HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--hhHHHH----HH-H---H
Q 010853 287 KV--------LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAV----LR-G---L 348 (499)
Q Consensus 287 ~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l----l~-~---~ 348 (499)
+. ++.+.+.+ +-|-.+|--.+..-...|+.+...++|++++. +++|-. ..|.-. |+ + -
T Consensus 301 d~Iv~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 301 DAIVGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred HHHhhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222 33444555555555555555555555555432 223311 011100 00 1 1
Q ss_pred HhcCCHHHHHHHHHHHhhC------------------------------------CCCcCHHhHHHHHHHHHhcCChhhH
Q 010853 349 FRLRRVEEAKEVFNCMLGI------------------------------------GVVADSTTYAIVIDGLCESNQLDEA 392 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~a 392 (499)
....+.+.+.++|+...+. |..|...++...|..-.+.++++..
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 1234445555555444331 3345555555555555556666666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..++++.+..++. +..+|......-...|+.+.|..+|.-.++.. .......|...|.--...|.++.|..+++++++
T Consensus 457 RkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 6666666555443 45556555555555666666666666555432 111123344444444456666666666666655
Q ss_pred CCCCCCHhHHHHHH
Q 010853 472 NGLNPDAVTWRILD 485 (499)
Q Consensus 472 ~g~~p~~~~~~~l~ 485 (499)
. .+....|-.+.
T Consensus 536 r--t~h~kvWisFA 547 (677)
T KOG1915|consen 536 R--TQHVKVWISFA 547 (677)
T ss_pred h--cccchHHHhHH
Confidence 2 23344554444
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3e-12 Score=111.36 Aligned_cols=410 Identities=13% Similarity=0.049 Sum_probs=209.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCRE 104 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 104 (499)
.++|++++|++.|.+.++. .|+ +..|.....+|...|++++..+-..+.++ +.|+ .-.+.....++-..
T Consensus 126 f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE-------l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE-------LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred hhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh-------cCcHHHHHHHHHHHHHHhh
Confidence 7889999999999999986 477 78888999999999999988775444433 2333 22455555666777
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHH-HHhcC--CCCChhhHHHHHHHHHccCChhHHH
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV-MRKRG--LTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
|++++|+.=..-..-.+.-.+..+- .++.-..+ ..|..-.++ +.+.+ +-|+.....+....+...-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~----- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK----- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc-----
Confidence 8888775322211111100111110 11111111 111111111 22121 23444444444433321100
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHh----c-CCCHHHHHHHHHHHHhC------CCCCch------hhHHHHHHHHhcc
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLC----G-ESDLEKARKVLQFMLSK------KDVDRT------RICNIYLRALCLI 244 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~a~~~~~~~~~~------~~~~~~------~~~~~l~~~~~~~ 244 (499)
.....+.......+..++. . ...+..+...+.+-... ....+. .+.......+.-.
T Consensus 267 -------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 267 -------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred -------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000011111111110 0 01122222222211100 000000 0111111222335
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 324 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 324 (499)
|+.-.+..-|+........++. .|.-+..+|....+.++....|.+..+.+ +.++.+|..-.+.+.-.+++++|..-
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 6666666666666665443222 25556666777777777777777776655 44555666666666666777777777
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
|++...-. +-+...|-.+--+..+.+.++++...|++..+. ++.-+..|+.....+...++++.|.+.|+..+....
T Consensus 417 F~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 417 FQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 76644222 222334444444445666777777777777665 355566777777777777777777777776654322
Q ss_pred C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 405 I-------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 405 ~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
. +.+.+--.++..- -.+++..|..++.+..+.+++ ....|..|...-.+.|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 1111112222211 236777777777777766533 44566777777777777777777777654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.6e-11 Score=104.93 Aligned_cols=366 Identities=12% Similarity=0.049 Sum_probs=260.3
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCc
Q 010853 46 GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE 125 (499)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 125 (499)
+...|+..+......+.+.|....|+..+..++... +..-..|..|...+ .+.+.+..+...+.. .+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~------P~~W~AWleL~~li---t~~e~~~~l~~~l~~----~~ 225 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY------PWFWSAWLELSELI---TDIEILSILVVGLPS----DM 225 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC------CcchHHHHHHHHhh---chHHHHHHHHhcCcc----cc
Confidence 445666667777777888888999988776665432 22333444444333 233333222222211 11
Q ss_pred hhhH-HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCcccHHHH
Q 010853 126 EFAC-GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVL 202 (499)
Q Consensus 126 ~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 202 (499)
...- -.+..++......+++.+-.+.+...|..-+...-+....+.-...++++|+.+|+++.+... .-|..+|..+
T Consensus 226 h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~ 305 (559)
T KOG1155|consen 226 HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNV 305 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHH
Confidence 1111 123455666668888888888888888776666556666667778999999999999988621 1156788877
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 203 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
+-.-..... ..++.+-...-..-.+.++..+..-|+-.++.++|...|+..++.++. ....|+.+..-|....+.
T Consensus 306 LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 306 LYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred HHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhccc
Confidence 744332222 223332222334455667888888899999999999999999988754 667899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (499)
..|.+-++...+-. +.|-..|-.+.++|.-.+...-|+-.|++...-. +.|...|.+|..+|.+.++.++|+..|.
T Consensus 381 ~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCyk 456 (559)
T KOG1155|consen 381 HAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYK 456 (559)
T ss_pred HHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998765 7899999999999999999999999998866444 5678999999999999999999999999
Q ss_pred HHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 363 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SN-IH-DNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
.....| ..+...+..|...|-+.++.++|.+.+++.++. |. .+ ....--.|..-+.+.+++++|.......
T Consensus 457 rai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 457 RAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999887 557788999999999999999999999877642 22 22 1122233556667777877776554443
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.3e-11 Score=104.98 Aligned_cols=293 Identities=14% Similarity=0.078 Sum_probs=210.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.|+|..|+++..+-.+++-. ....|..-.++.-..|+.+.+-.++.++.+....++....-...+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67777777777776665533 23345555566667778888888877776554455555666666777777888888877
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC------HHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 254 LVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD------AVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
+.++.+.++. +.........+|.+.|++.....++..+.+.+...+. ..+|..+++-....+..+.-...+++
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777777654 5667788888888888888888888888887753322 24566677666666666665556655
Q ss_pred HhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC
Q 010853 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 407 (499)
Q Consensus 328 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (499)
.- ...+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+ -.+.+.++.+.-.+..+...+..+. +
T Consensus 255 ~p--r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 255 QP--RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred cc--HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 32 23344556666788888899999999999999888876555 2222 2456677777777777776644333 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 408 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++....-..|+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 578889999999999999999999977765 78899999999999999999999999988764333443
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.9e-11 Score=108.42 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=228.1
Q ss_pred CCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 010853 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 273 (499)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (499)
-+......-.+-+...+++.+..++.+.+.+ ..++....+-.-|.++...|+..+...+-..+.+.-+. ...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle-~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLE-KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHh-hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHH
Confidence 3445555556667788999999999999985 46667777777788999999999998888888887544 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 274 NGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
--|...|+..+|.+.|.+..... +.-...|-.....|.-.+..++|+..+..+-+-. +-...-+--+.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhcc
Confidence 88999999999999999887654 3446788889999999999999999887653322 1122222234445888999
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC--CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP--SN----IHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~~li~~~~~~g~~~~a 427 (499)
++.|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+..... .. ..-..+++.|..+|.+.+.+++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999998864 667888888887778889999999999887611 01 11344688999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 010853 428 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 489 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 489 (499)
+..+++.+....+ +..++.++.-.|...|+++.|.+.|.+..- +.|+..+.+.+++.+.
T Consensus 475 I~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 475 IDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999987543 888999999999999999999999999886 8899988888876553
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=9.9e-12 Score=102.53 Aligned_cols=224 Identities=18% Similarity=0.133 Sum_probs=101.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC--HHhHHHHHHHHHcCCC
Q 010853 29 TGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--NAAFANLVDSLCREGY 106 (499)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 106 (499)
++++++|.++|-+|.+.+ +-+..+--+|.+.+-..|..++|+.++..+.+. ++...+ ......|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHhhh
Confidence 444555666666665532 112233334555555566666665554444321 122111 1223334444555555
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh----hHHHHHHHHHccCChhHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV----SYNSIVHGLCKHGGCMRAYQ 182 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~ 182 (499)
+|.|..+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.|.++... .|.-+...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 5555555555554332 222344445555555555555555555555553332211 23333344444445555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 183 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
++.+..+.+. -.+..-..+.+.....|+++.|.+.++.+.+.+..--+.+...+..+|...|++++....+..+.+
T Consensus 202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555444321 122233334444555555555555555554443333333344444444444444444444444333
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.2e-12 Score=118.30 Aligned_cols=281 Identities=13% Similarity=0.081 Sum_probs=213.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
+..+|...|.....+ +.-+..+...+..+|...+++++|+++|+.+.... ...+..+|...+.-+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 467788888885443 33344667778889999999999999999886432 122344566655444321 12222
Q ss_pred H-HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 254 L-VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 254 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+ +.+.+.. +-.+.+|-++.++|.-+++.+.|++.|++..+.. +....+|+.+..-+.....++.|...|...+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2222222 3467899999999999999999999999998764 45788999888888999999999999987653
Q ss_pred CCCCchhh---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH
Q 010853 333 GYSPGIVT---YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 409 (499)
Q Consensus 333 ~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (499)
.|+.. |-.+.-.|.+.++++.|+-.|++..+.+ +.+......+...+.+.|+.++|.++++++...+.+ |+.
T Consensus 484 ---~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 484 ---VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ---CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 34444 4456667889999999999999999976 567778888888999999999999999999877766 544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.--..+..+...+++++|++.++++++. .| +...|..+.+.|.+.|+.+.|+.-|--|.+..
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4445667777889999999999999886 44 45677788889999999999999998887743
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.4e-11 Score=100.31 Aligned_cols=263 Identities=13% Similarity=0.081 Sum_probs=152.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCch---hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 010853 201 VLVEGLCGESDLEKARKVLQFMLSKKDVDRT---RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 277 (499)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (499)
.|.+.|-+.|..+.|+++.+.+.++...+.. ....-+.+-|...|-++.|+.+|..+.+.+- .-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHH
Confidence 3444444444444444444444433222211 1233334444455555555555555554331 13445566777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPD----AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
...+|++|+++-+++.+.+. .+. ...|..+...+....+.+.|..++.+..... +..+..--.+.+.....|+
T Consensus 153 ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGD 229 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccc
Confidence 77777777777776665543 222 2345556666666777778888887766554 2233333345566777788
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....++. -..+...-....-.+.|..++.+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHH
Confidence 8888888888887765555667777888888888888888888877765444333 33333333334445566666555
Q ss_pred HHHcCCCCChhhHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 010853 434 LVDSGVTPNIVCYNVVIDGACK---LSMKREAYQILREMRK 471 (499)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~ 471 (499)
-+.. +|+...+..++..-.. .|...+-+.+++.|..
T Consensus 308 Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5444 6777778877776543 3445555666666653
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=2.8e-11 Score=103.05 Aligned_cols=293 Identities=10% Similarity=0.015 Sum_probs=157.9
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 183 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 183 (499)
.|+|.+|+++..+-.+.+..| ...|..-..+--+.|+.+.+-.++.+..+.-..++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466777776666655555432 2344445555666677777777776666653344555566666666666666666666
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC
Q 010853 184 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263 (499)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (499)
++++.+.+. -+........++|.+.|++.....++..+.+.+...+...-.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 666665442 244555666666667777777777666666655544432110
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
....+|+.+++-....+..+.-...++.....- ..++..-.+++.-+.+.|+.++|.+++.+.++. +..|+ ...
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~ 300 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCR 300 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHH
Confidence 012234444544444444444444454444332 333444455555555666666666666554432 22222 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
.-.+.+.++.+.-++..++-.+.. +.++..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+.+++.+.|+
T Consensus 301 -~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 301 -LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGE 376 (400)
T ss_pred -HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCC
Confidence 112344455554444444443332 33345555666666666666666666665533 34556666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 010853 424 IHEAVHFLYELVD 436 (499)
Q Consensus 424 ~~~a~~~~~~~~~ 436 (499)
..+|.+..++...
T Consensus 377 ~~~A~~~r~e~L~ 389 (400)
T COG3071 377 PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666655543
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.3e-12 Score=115.53 Aligned_cols=290 Identities=11% Similarity=-0.002 Sum_probs=223.8
Q ss_pred ChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCC--CCCcccHHHHHHHHhcCCCHHHHHH
Q 010853 141 RNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY--LPSEHTYKVLVEGLCGESDLEKARK 217 (499)
Q Consensus 141 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 217 (499)
+..+|...|+.+..+ .+| ..+...+.++|...+++++|..+|+.+.+... .-+...|...+..+-+ +-+..
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 457899999996665 334 45666788999999999999999999877421 1256778887766533 22333
Q ss_pred HHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 010853 218 VLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF 297 (499)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 297 (499)
.+.+-+-...+..+.+|-.+..+|.-+++.+.|++.|++..+.... ...+|+.+..-+....++|.|...|+......
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3333332445667889999999999999999999999998877532 67888888888999999999999999988432
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHH
Q 010853 298 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 377 (499)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (499)
+.+-.+|--+...|.+.++++.|.-.|.++..-+ +-+.+....+...+.+.|+.++|+.++++..... +-|+..--
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 2333444556778999999999999998876544 4456667777788889999999999999998876 34555555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
.-+..+...+++++|...++++++.-+. +..+|..+...|.+.|+.+.|+.-|--+.+.+++++.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5566778899999999999999865433 6668889999999999999999999999887655543
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.7e-10 Score=95.41 Aligned_cols=427 Identities=12% Similarity=0.061 Sum_probs=257.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
+....++..|+.+++.-...+-.-...+---+..++...|++++|...|.-+.+ .-.++...+-.|..+..-.|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~------~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN------KDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc------cCCCCcccchhHHHHHHHHH
Confidence 356788999999999887655333333444456677899999999998765543 12234445555777777789
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
.+.+|..+-....+.. ---..+++.--+.++-++-..+.+.+.+. ..--.+|.......-.+.+|+++|.
T Consensus 106 ~Y~eA~~~~~ka~k~p-----L~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTP-----LCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhCCCCh-----HHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999887775432 22233445555667766666665555542 2333344444444456889999999
Q ss_pred HHHhCCCCCCcccHHH-HHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC--
Q 010853 186 EGIQFGYLPSEHTYKV-LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-- 262 (499)
Q Consensus 186 ~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 262 (499)
.....+ |.-...+. +.-+|.+..-++.+.++++-.+. ..+.++...+..+....+.-+-..|++-...+.+.+-
T Consensus 176 rvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~-q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLR-QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH-hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 887654 34344443 34456778888888888887763 3444444555544444432222222222222221110
Q ss_pred ------------------------CC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH----
Q 010853 263 ------------------------QP-----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII---- 309 (499)
Q Consensus 263 ------------------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~---- 309 (499)
-| -+..--.++-.|.+.+++.+|..+.+++... .|-......+.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt---tP~EyilKgvv~aal 329 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT---TPYEYILKGVVFAAL 329 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC---ChHHHHHHHHHHHHh
Confidence 00 0111233445577889999999888876521 23222222222
Q ss_pred -HHHHccCCHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 310 -FGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 310 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+-........-|.+.| ++.-..+..-|. .--..+..++.-..++++++..++.+...=...|...+ .+..+++..|
T Consensus 330 GQe~gSreHlKiAqqff-qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg 407 (557)
T KOG3785|consen 330 GQETGSREHLKIAQQFF-QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG 407 (557)
T ss_pred hhhcCcHHHHHHHHHHH-HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence 2222233344555544 334444433332 23345566666677889999888888776433344444 4788999999
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCChHHHHHH
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVY-AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-YNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~ 465 (499)
++.+|+++|-.+....++ |..+| ..|.++|.+++.++.|++++-++-. +.+..+ ...+..-|.+.+.+--|.+.
T Consensus 408 ny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred ChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888655555 55666 5566899999999999988765532 222333 33445568888888888888
Q ss_pred HHHHHHCCCCCCHhHHH
Q 010853 466 LREMRKNGLNPDAVTWR 482 (499)
Q Consensus 466 ~~~m~~~g~~p~~~~~~ 482 (499)
|+.+.. ..|++..|.
T Consensus 484 Fd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 484 FDELEI--LDPTPENWE 498 (557)
T ss_pred hhHHHc--cCCCccccC
Confidence 888876 456655553
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=1.4e-08 Score=91.96 Aligned_cols=311 Identities=12% Similarity=0.130 Sum_probs=175.2
Q ss_pred CChhHHHHHHHHHHhCCCCCC------cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCc---hhhHHHHHHHHhccC
Q 010853 175 GGCMRAYQLLEEGIQFGYLPS------EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR---TRICNIYLRALCLIK 245 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 245 (499)
|+..+-...|.+.++. +.|. ...|..+.+.|-..|+++.|..+|++..+-..+.- ..+|......=.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3444445555554432 2231 23466677778888888888888888765433322 335555556666677
Q ss_pred ChHHHHHHHHHHHhcCCC-----------C------CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 010853 246 NPTELLNVLVFMLQTQCQ-----------P------DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 308 (499)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (499)
+++.|+++++....-... + +...|...++.--..|-++....+++.+.+.....|- .....
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~Ny 517 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINY 517 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHH
Confidence 777787777655422111 1 2333455555555667777777888888776643333 22222
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCcCHHhHHHHH--HHH
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR---LRRVEEAKEVFNCMLGIGVVADSTTYAIVI--DGL 383 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~ 383 (499)
...+-.+.-++++.+.|++-+.-...+.-...|+..+.-+.+ ...++.|..+|++..+ |.+|...-+-.|+ ..-
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 223445556788888887755443333233456665555543 2368999999999998 5565443222222 222
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHhcCC
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI---DGACKLSM 458 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~ 458 (499)
-+.|-...|..+++++... +.+.. ..||..|.--...=-+.....+|++.++. -|+...-...+ ..=.+.|.
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGE 673 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGE 673 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhh
Confidence 3467788888999887532 33222 26777765544443445566677777765 44544433322 23356777
Q ss_pred hHHHHHHHHHHHHCCCCC--CHhHHHHHHHHhcccCC
Q 010853 459 KREAYQILREMRKNGLNP--DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 459 ~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~ 493 (499)
.+.|..++..-.+. ..| +...|...-.-=.++|+
T Consensus 674 idRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 674 IDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 88887777655432 222 34445544444444454
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=3e-11 Score=112.65 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHH
Q 010853 86 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYN 165 (499)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~ 165 (499)
|+.||..||.++|..||..|+.+.|- +|.-|.-...+.....|+.++......++.+.+. .|...+|.
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 66666666666666666666666665 6665555555445556666666666666655554 45666666
Q ss_pred HHHHHHHccCChhH
Q 010853 166 SIVHGLCKHGGCMR 179 (499)
Q Consensus 166 ~l~~~~~~~~~~~~ 179 (499)
.|..+|...||...
T Consensus 88 ~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHhccchHH
Confidence 66666666666544
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=9.5e-12 Score=115.90 Aligned_cols=248 Identities=18% Similarity=0.156 Sum_probs=117.0
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC
Q 010853 184 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ 263 (499)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (499)
+..+...|+.|+..||..+|.-|+..|+++.|- +|..|..+..+.....++.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334444555555555555555555555555555 5555554444444555555555555555544433 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHH-----------------------HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEE-----------------------ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~-----------------------a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (499)
|...+|..|..+|...||+.. ...++..+.-.+..-||..+ .+......|.++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHH
Confidence 455555556666655555433 22233222221111222211 2222233344445
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+++++..+-......|. ..+++-+.... .+++-..+.+...+ .|+..+|..++.+-..+|+.+.|..++.+|
T Consensus 158 llkll~~~Pvsa~~~p~----~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPF----QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHhhCCcccccchH----HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 54444331111101111 11233332222 22333333333322 356666666666666666666666666666
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
.+.|+..+.+-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+...
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 666665555555555444 455555555566666666666666666555555553
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=1e-08 Score=93.04 Aligned_cols=427 Identities=13% Similarity=0.073 Sum_probs=263.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
-..+++...++..+.+.+. .+-...+.....-.+...|+.++|.......+. +-.-+.+.|+.+.-.+....+
T Consensus 18 yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr------~d~~S~vCwHv~gl~~R~dK~ 90 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR------NDLKSHVCWHVLGLLQRSDKK 90 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhc------cCcccchhHHHHHHHHhhhhh
Confidence 5667788888888888773 333455666666667778888888765443332 122245677777777778888
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
+++|++.|......+. .|...+.-+.-.-++.++++.....-..+.+.... ....|..+..++.-.|+...|..++++
T Consensus 91 Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 91 YDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999998888877665 55666666666667778888777777776665221 345677777777788888888888888
Q ss_pred HHhCC-CCCCcccHHHHH------HHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 187 GIQFG-YLPSEHTYKVLV------EGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 187 ~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
..+.. -.|+...|.... ....+.|.++.|.+.+.... ..+......-..-...+.+.++.++|..++..++.
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e-~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE-KQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh-hHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 77654 245555554332 23456777777777776554 22333333444556677788888899988888887
Q ss_pred cCCCCCHhhHH-HHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHHhccCCCCC
Q 010853 260 TQCQPDVITLN-TVINGFCKMGRIEEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN-LLYQVMPQRGYSP 336 (499)
Q Consensus 260 ~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~ 336 (499)
.. ||...|. .+..++.+-.+.-++. .+|....+.. |....-..+--.......+.+..+ ++...+ ..|+++
T Consensus 248 rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~ 321 (700)
T KOG1156|consen 248 RN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPS 321 (700)
T ss_pred hC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCc
Confidence 74 4444444 4444443333333333 5565554432 222211111112222233333333 333333 555544
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHH----HHHhhCC----------CCcCHHh--HHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVF----NCMLGIG----------VVADSTT--YAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
++..+...+-.....+-.+++. ..+...| -+|.... +..++..+-+.|+++.|...++..+
T Consensus 322 ---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 ---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred ---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 2333333332222111111111 1111111 1455444 4456788889999999999999997
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
...+. -+..|..=.+.+...|++++|..++++..+.+ .+|...-..-..-..++++.++|.++....-+.|.
T Consensus 399 dHTPT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 399 DHTPT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccCch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 65332 22355566688999999999999999999876 44665555677777889999999999999887764
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.4e-10 Score=99.31 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=121.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+.+.+... +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 3444555556666666666666666655433 3345555556666666666666666666554332 22334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
..+...|++++|...++...+... +.....+..+..++...|++++|...+++....... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 566666666666666666655321 123345555666677777777777777777654332 445666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
++|.+.+++..+.. +.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777776652 33455566666667777777777777776654
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=1.6e-10 Score=98.95 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=163.3
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 230 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
....+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Confidence 355777888899999999999999998887653 356777888889999999999999999888764 45667788888
Q ss_pred HHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
..+...|++++|.+.+.+.+.....+.....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCH
Confidence 89999999999999999877543333344566677788889999999999999988764 44567788888899999999
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++|...+++..... ..+...+..+...+...|+.++|..+.+.+...
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999987652 345666777888888899999999988877653
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=8.9e-10 Score=102.13 Aligned_cols=290 Identities=14% Similarity=0.080 Sum_probs=168.3
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh------cC
Q 010853 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC------GE 209 (499)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~ 209 (499)
+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+...|...+..+. ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34445555555555443322 11122333444445555555555555555555443 33333322222222 11
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh-HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKV 288 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 288 (499)
.+.+....+++++...- |.......+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....+..-..++
T Consensus 91 ~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 23455555555554221 2222222222222221222 2344455555666653 2455666666655555555555
Q ss_pred HHHHhhCC-------------CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 289 LNDMVAGK-------------FCAPDA--VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 289 ~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
+....... ..+|+. .++..+.+.|...|++++|+..+++.+... +..+..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCC
Confidence 55543221 113444 345667888889999999999999888654 2235567777888999999
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH------HH--HHHHHHHHhcCCHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY------VY--AAMIKGLCRSGKIH 425 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g~~~ 425 (499)
+.+|.+.++..++.. .-|..+-+-.+..+.++|++++|..++....+.+..|-.. +| .....+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999876 4577777788888899999999999999987666433221 22 44567888999999
Q ss_pred HHHHHHHHHHH
Q 010853 426 EAVHFLYELVD 436 (499)
Q Consensus 426 ~a~~~~~~~~~ 436 (499)
.|++.|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766553
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.7e-08 Score=87.38 Aligned_cols=226 Identities=15% Similarity=0.097 Sum_probs=138.0
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
++..+-......+|++++|.+...++...+ +.+...+.+=+-++.+.++|++|..+ ++.-. ....+..-+-.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~----ikk~~---~~~~~~~~~fE 84 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL----IKKNG---ALLVINSFFFE 84 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH----HHhcc---hhhhcchhhHH
Confidence 344555555589999999999999999975 45677788888899999999999753 33211 11112111112
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
-.-+.-+.+..++|+..++-... .+..+...-...+.+.|++++|+++|+.+.+.+.. .+...+.+-+..
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a-- 154 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA-- 154 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--
Confidence 23344578999999999983332 22335555667788999999999999999887432 222222211100
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHH---HHHHhcCCCHHHHHHHHHHHHh-------CCCCCch-------hhHHHHHH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVL---VEGLCGESDLEKARKVLQFMLS-------KKDVDRT-------RICNIYLR 239 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-------~~~~~l~~ 239 (499)
...+... +.+......| ..+|..+ ...++..|++..|+++++.... .+...+. .+-.-+..
T Consensus 155 ~~a~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 155 VAAALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHhhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 0011111 0122222223 3344443 3455678999999999988721 1111111 12333455
Q ss_pred HHhccCChHHHHHHHHHHHhcCC
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQC 262 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~ 262 (499)
.+...|+.++|..++...++..+
T Consensus 233 VlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHhcchHHHHHHHHHHHHhcC
Confidence 66778999999999988887764
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=2.3e-10 Score=109.88 Aligned_cols=267 Identities=9% Similarity=-0.013 Sum_probs=176.7
Q ss_pred CcccHHHHHHHHh-----cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh---------ccCChHHHHHHHHHHHhc
Q 010853 195 SEHTYKVLVEGLC-----GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC---------LIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 195 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 260 (499)
+...|...+.+.. ..+++++|..+|++..+. .+.....+..+..++. ..++.++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 3344445555431 123567888899888743 3333445555544433 234578899999888887
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh
Q 010853 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 340 (499)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 340 (499)
.+. +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.+......+ ..
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~--~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA--AA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh--hh
Confidence 644 66777788888888999999999999988765 55677788888889999999999999988775543222 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++..... .+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 3334445666788999999998887654233455567777888889999999999988754322 234445666667777
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 421 SGKIHEAVHFLYELVDSG-VTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.| ++|...++++.+.. -.+....+ +-..+.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766531 12222222 33345556776666555 7776643
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=4.9e-11 Score=98.64 Aligned_cols=235 Identities=14% Similarity=0.056 Sum_probs=191.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
-+-+.++|.+.|.+.+|.+.++..++.. |-+.||..|-+.|.+..+++.|+.++.+-.+.- +-|+....-+...+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHH
Confidence 3567789999999999999998888774 455677888999999999999999999888753 344444556777888
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..++.++|.++|+..++.. +.++.....+...|.-.++++.|+..|+.+.+.|+ -++..|+.+.-+|.-.++++-+.
T Consensus 302 am~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999887666 34556666777778888999999999999999995 58888999999999999999999
Q ss_pred HHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 394 RFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..|++....--.|+. .+|-.+.......|++..|.+.|+-....+.. +...++.|.-.-.+.|+.++|..+++...+
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 999988754443433 36777888888889999999999988877643 667888888888899999999999998876
Q ss_pred CCCCCCH
Q 010853 472 NGLNPDA 478 (499)
Q Consensus 472 ~g~~p~~ 478 (499)
+.|+.
T Consensus 458 --~~P~m 462 (478)
T KOG1129|consen 458 --VMPDM 462 (478)
T ss_pred --hCccc
Confidence 45553
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.5e-09 Score=94.91 Aligned_cols=401 Identities=12% Similarity=0.034 Sum_probs=234.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 132 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 132 (499)
+-...+-|.++|++++|+..|...++. .|+ +.-|.....+|...|++++..+--....+.++ .-+.++..-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l-------~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RR 189 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL-------CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRR 189 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc-------CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHH
Confidence 334556677888888888888777643 344 56677777888888888888877777766553 223344445
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH---------HHhC--CCCCCcccHHH
Q 010853 133 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE---------GIQF--GYLPSEHTYKV 201 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~--~~~~~~~~~~~ 201 (499)
..++-..|++++|+.=. |-..++..+....-...+.+++.+ +.+. .+.|+.....+
T Consensus 190 A~A~E~lg~~~eal~D~-------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~s 256 (606)
T KOG0547|consen 190 ASAHEQLGKFDEALFDV-------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIAS 256 (606)
T ss_pred HHHHHhhccHHHHHHhh-------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 55666666666664311 111222222222212222222221 1111 12333333333
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc--cCChHHHHHHHHHHHhc---CCCC---C------Hh
Q 010853 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL--IKNPTELLNVLVFMLQT---QCQP---D------VI 267 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~---~~~~---~------~~ 267 (499)
....+...-.. .+...+...+...-. .++.+.. ...+.++.+.+.+-... .... | ..
T Consensus 257 yf~sF~~~~~~--------~~~~~~~ksDa~l~~-~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 257 YFGSFHADPKP--------LFDNKSDKSDAALAE-ALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred HHhhccccccc--------cccCCCccchhhHHH-HHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 33332211000 000000000100000 0111111 11223333333221111 0111 1 11
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
+...-...+.-.|+.-.|..-|+...... +.+...|..+..+|....+.++....|.+...-..- ++.+|..-.+.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm 403 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQM 403 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHH
Confidence 12222223445688899999999988765 333344888888999999999999999887655533 44567677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
..-.+++++|..=|++.++.. +-+...|-.+.-+..+.+.++++...|++.+++- +.-+.+|+.....+..+++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHH
Confidence 778889999999999999875 4466677777777788999999999999998664 44777999999999999999999
Q ss_pred HHHHHHHHHcCCC-----CChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhcccCC
Q 010853 428 VHFLYELVDSGVT-----PNIVCY--NVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRGN 493 (499)
Q Consensus 428 ~~~~~~~~~~~~~-----~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 493 (499)
.+.|+..++.... .+...+ -.++ .+--.+++..|..++.+..+ +.|. ...|..|...-.+.|+
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~ 552 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGK 552 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhh
Confidence 9999999875322 122211 1222 12235889999999999987 4553 3566666655555544
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1.9e-10 Score=110.36 Aligned_cols=251 Identities=11% Similarity=0.029 Sum_probs=162.4
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH---------ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 140 GRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC---------KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 140 ~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
+.+++|.++|++..+.... +...|..+..++. ..+++++|...+++..+... -+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 4578888888888876322 3445555554443 22447888888888877542 25566777777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 290 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 290 (499)
++++|...+++..+. .+.+...+..+...+...|++++|...++...+..+. +...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLL-SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 899999999888754 3445567777888888889999999999888877544 22233334445666788899999888
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 010853 291 DMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG- 368 (499)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 368 (499)
+...... +.+...+..+..++...|+.++|...+.+.... .|+ ....+.+...+...| +.|...++.+.+..
T Consensus 431 ~~l~~~~-p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 431 ELRSQHL-QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHhcc-ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 8775431 224555677777888899999999988775433 333 333444445556666 47777777665431
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
-.+....+ +...+.-.|+.+.+... +++.+.+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11222222 33345556666666555 7766543
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=2.3e-07 Score=84.47 Aligned_cols=446 Identities=11% Similarity=0.098 Sum_probs=284.0
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCG-VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
...|.+.+.++|++..-+..|++.+..= +.-...+|...+......+-++-+..+|++.+.-- +..-..-
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---------P~~~eey 175 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---------PEAREEY 175 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---------HHHHHHH
Confidence 3556777789999999999999987642 11245678888888888888888888887776532 2334557
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCC------CCCchhhHHHHHHHHHhcCChhh---HHHHHHHHHhcCCCCCh--hhHHH
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGK------SVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSL--VSYNS 166 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~g~~p~~--~~~~~ 166 (499)
+..+++.+++++|.+.+..+.... .+.+...|..+.+..++.-+.-. ...++..+..+ -+|. ..|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 888899999999999888876432 23455667777666666544332 33344444333 3343 46899
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC----------------------CHHHHHHHHHHHHh
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES----------------------DLEKARKVLQFMLS 224 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~ 224 (499)
|.+.|.+.|.+++|..+|++.+..- .+..-|..+.++|+.-. +++-...-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 9999999999999999999877642 34444555555554311 12222333333332
Q ss_pred CC-----------CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCC------CHhhHHHHHHHHHhcCCHHHHHH
Q 010853 225 KK-----------DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP------DVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 225 ~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
.. .+.+...|..- .-...|+..+....+.+..+.- .| -...|..+.+.|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 21 11111122221 1223466667777777666541 11 13457888899999999999999
Q ss_pred HHHHHhhCCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHhccCC----------CCC------chhhHHHHHHH
Q 010853 288 VLNDMVAGKFCAPD----AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG----------YSP------GIVTYNAVLRG 347 (499)
Q Consensus 288 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~ll~~ 347 (499)
+|++..+... +. ..+|..-...=.+..+++.|++++.+...... .++ +...|...+..
T Consensus 409 ifeka~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 409 IFEKATKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL 486 (835)
T ss_pred HHHHhhcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH
Confidence 9999987553 33 34455555566678889999998877532111 011 22335555555
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhc---CC
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRS---GK 423 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~---g~ 423 (499)
--..|-++....+|+.+.+..+. ++.........+-...-++++.+++++-+..-..|+.. .|+..+.-+.+. -.
T Consensus 487 eEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 55678899999999999887654 33333333334555667889999998876555555554 788887776653 36
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHH
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVV--IDGACKLSMKREAYQILREMRKNGLNPD--AVTWRILD 485 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~ 485 (499)
.+.|..+|++.++ |++|...-+--| ...=-+.|....|+.++++... ++++. -..|++.|
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 8999999999999 555543322222 2222346888889999998754 24443 24666666
No 67
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2e-12 Score=79.17 Aligned_cols=49 Identities=39% Similarity=0.700 Sum_probs=26.3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhc
Q 010853 441 PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHG 489 (499)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 489 (499)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=2.2e-12 Score=78.97 Aligned_cols=50 Identities=36% Similarity=0.818 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 406 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
No 69
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=3.3e-08 Score=91.66 Aligned_cols=208 Identities=13% Similarity=0.026 Sum_probs=120.4
Q ss_pred CCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhH
Q 010853 86 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSL-VSY 164 (499)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~-~~~ 164 (499)
.+..++..|..+.-++...|+++.+.+.|+.....-. .....|..+-..+...|.-..|..+++.-......|+. ..+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 4556777777777778888888888888877654332 34456777777777777777777777766554323433 333
Q ss_pred HHHHHHHHc-cCChhHHHHHHHHHHhC--CC--CCCcccHHHHHHHHhc-----------CCCHHHHHHHHHHHHhCCCC
Q 010853 165 NSIVHGLCK-HGGCMRAYQLLEEGIQF--GY--LPSEHTYKVLVEGLCG-----------ESDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 165 ~~l~~~~~~-~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~ 228 (499)
-..-..|.+ .+..++++..-.+.+.. +. ......|..+.-+|.. ...-.++.+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 333333433 45555555554444431 10 1122223333222221 112334555666665432 3
Q ss_pred CchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 229 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.|+.+...+.--|+..++.+.|.+..++..+-+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 3334444455556667777777777777777655557777777777777777777777777665543
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.6e-07 Score=80.84 Aligned_cols=297 Identities=12% Similarity=0.052 Sum_probs=209.3
Q ss_pred cCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 252 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (499)
.++...+.+.+-.+... -++-|+.....+...+...|+.++|+..|++.... .+........+.-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44444444444333322 34557788889999999999999999999988632 23333445555556677888888877
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 253 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+...+....-. ....|-.-.......++++.|+.+-++..+.. +.+...+-.-...+...++.++|.-.|.....-.
T Consensus 288 L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 288 LMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred HHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 77776654311 22233333444556788999999988887755 4556666666677888999999998888754322
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH-HHHH-hcCChhhHHHHHHHHhcCCCCCCH-H
Q 010853 333 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI-DGLC-ESNQLDEAKRFWDDIVWPSNIHDN-Y 409 (499)
Q Consensus 333 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~ 409 (499)
+-+..+|..++.+|...|++.+|...-+...+. ++.+..+...+. ..|. ...--++|..++++.... .|+. .
T Consensus 365 --p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~ 439 (564)
T KOG1174|consen 365 --PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTP 439 (564)
T ss_pred --hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHH
Confidence 346789999999999999999998877766553 244666666552 3332 233457899999988654 3332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-hHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-VTWRI 483 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ 483 (499)
..+.+...+...|..++++.++++.... .||....+.|.+.+...+.+.+|.+.|....+ +.|+. .+...
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~G 510 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRG 510 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHH
Confidence 5567778888999999999999988775 78999999999999999999999999999887 45643 34433
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.9e-10 Score=95.21 Aligned_cols=231 Identities=15% Similarity=0.058 Sum_probs=192.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 010853 200 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 279 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (499)
+.+.++|.+.|.+.+|.+.++..++ ..|-+.+|..+-+.|.+..+++.|+.++.+-++.-+ -|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 5688999999999999999998874 456667889999999999999999999998887732 2444455677788889
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 010853 280 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 359 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 359 (499)
++.++|.++++...+.. +.++.....+...|...++++-|+..|.+++ +.|+ -++..|+.+.-+|.-.++++-++.
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999876 5678888888889999999999999999976 4444 356788888889999999999999
Q ss_pred HHHHHhhCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 360 VFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 360 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
-|......--.|+ ..+|..+.......||+..|.+.|+-....+.. ....++.|.-.-.+.|++++|..+++...+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9998876544444 346777888888899999999999999876654 6778999998899999999999999988775
Q ss_pred C
Q 010853 438 G 438 (499)
Q Consensus 438 ~ 438 (499)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=2.4e-07 Score=78.14 Aligned_cols=395 Identities=10% Similarity=-0.005 Sum_probs=226.6
Q ss_pred ChhhHHHHH-HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH-
Q 010853 18 PVASLTSAL-AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA- 95 (499)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (499)
++..|+..+ .+.|++++|+.++..+.+.. .++...+-.|...+.-.|.+.+|.++..+. |++....
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----------~k~pL~~R 125 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----------PKTPLCIR 125 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----------CCChHHHH
Confidence 344555555 78899999999999988865 466667777877888889999997743221 2222222
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHH-HHHHHHcc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNS-IVHGLCKH 174 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~-l~~~~~~~ 174 (499)
.+.....+.++-++.....+.+...- .-..+|.......-.+.+|++++...... .|+-...|. +.-+|.+.
T Consensus 126 LlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKl 198 (557)
T KOG3785|consen 126 LLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKL 198 (557)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhc
Confidence 34445556677666666655554321 11223444444445677788888777665 344444443 33445566
Q ss_pred CChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhc--CCC---------------------------------HHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLCG--ESD---------------------------------LEKARKV 218 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--~~~---------------------------------~~~a~~~ 218 (499)
.-++-+.++++--.+. + ||. ...+..+....+ .|+ -+.|.++
T Consensus 199 DYydvsqevl~vYL~q-~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqV 276 (557)
T KOG3785|consen 199 DYYDVSQEVLKVYLRQ-F-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQV 276 (557)
T ss_pred chhhhHHHHHHHHHHh-C-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHh
Confidence 6566666666554442 2 332 222222211111 111 1222222
Q ss_pred HHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHH-----HHHhcCCHHHHHHHHHHHh
Q 010853 219 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN-----GFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~ 293 (499)
+--+.+ .. +..--.++--|.+.++.++|..+..++.-. .|-......+.. -........-|.+.|.-.-
T Consensus 277 LP~L~~--~I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 277 LPSLMK--HI--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred chHHHh--hC--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 222110 11 123334555677889999999887765411 122222222211 1112223566777776655
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH
Q 010853 294 AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS 373 (499)
Q Consensus 294 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 373 (499)
.+.....+..--.++...+.-..++++.+-.+.. ++..-...|...|| +.++.+..|.+.+|+++|-.+....++.+.
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-i~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-IESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 4443222233344556666666778888887766 44444444555554 678888999999999999888766555444
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV-YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
.-...|.++|.+++.++.|+.++-++.. ..+..+ ...+..-|.+.+.+=-|-+.|+.+...+ |++..|
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW 497 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW 497 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc
Confidence 4445667899999999999888766532 223333 3444567888888888888888877664 444444
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.32 E-value=4.7e-09 Score=97.44 Aligned_cols=260 Identities=11% Similarity=0.088 Sum_probs=136.0
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----CC
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM-----GR 281 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~ 281 (499)
...|++++|++.++.-. ..+.............+.+.|+.++|..++..+++.++. |..-|..+..+..-. .+
T Consensus 15 ~e~g~~~~AL~~L~~~~-~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNE-KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred HHCCCHHHHHHHHHhhh-hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccccccc
Confidence 44455555555554432 223333344444455555555555555555555555422 333333333333111 23
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 282 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 361 (499)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (499)
.+...++++++.... |.......+.-.+.....+....+.|-...-..|+|+ +|+.+-..|......+-...++
T Consensus 93 ~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 93 VEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred HHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 455556666555432 3222222222222222223322222222222344433 3444444444333333334444
Q ss_pred HHHhhC----C----------CCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 362 NCMLGI----G----------VVADS--TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 362 ~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
...... + -+|+. .++..+...|...|++++|..++++.++..+. .+..|..-.+.+-+.|++.
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence 433221 1 12333 24455566777788888888888888766543 4557777778888888888
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+|.+.++..+..+.. |...-+..+..+.+.|+.++|.+++....+.+..|
T Consensus 246 ~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 246 EAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 888888888877644 66677777777888888888888888776655433
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.4e-08 Score=88.32 Aligned_cols=284 Identities=10% Similarity=-0.013 Sum_probs=165.1
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHH
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLR 239 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 239 (499)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+...+=.++.+ ..+..+.+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHH
Confidence 34444444455555666677777666665532 34455555555566666666666666666653 34444556666666
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHH
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (499)
-|...|+..+|.+.|.+....... =...|-.+...|+-.|..+.|...+....+-- +-...-+--+.--|.+.++..
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHH
Confidence 666667777777777655443322 23356666666777777777776666554421 111112222334466667777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C--CCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----G--VVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
.|.+.|.+.+... +.|+...+-+.-.....+.+.+|..+|+..... + ...-..+++.|..+|.+.+.+++|.
T Consensus 398 LAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 7777776654333 334555555554555566777777777665521 0 0012234666777777777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..++.......+ +..++.++.-.|...|+++.|++.|.+.... .|+..+-..++..+
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 777777655443 6667777777777777777777777776543 56655555555433
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=4e-07 Score=78.51 Aligned_cols=298 Identities=12% Similarity=0.065 Sum_probs=214.4
Q ss_pred HHHHHHh--cCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc-ccHHHHHHHHh
Q 010853 132 MIDSLCR--SGRNHGASRVVYVMRKRG-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTYKVLVEGLC 207 (499)
Q Consensus 132 l~~~~~~--~~~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 207 (499)
-+.+++. .++...|...+-.+.... +.-|+.....+.+++...|+.++|...|++.... .|+. .......-.+.
T Consensus 200 wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 200 WIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHH
Confidence 3444433 445555555554444433 3446777889999999999999999999987663 3332 22222333456
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 010853 208 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
..|+++....+...+.... .-...-|-.-+..+...+++..|+.+-++..+.... +...|..-...+...+++++|.-
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred hccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHH
Confidence 7889999888888887432 223334444555666788899999999888876543 55556555677888999999999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH-HHH-HhcCCHHHHHHHHHHHh
Q 010853 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL-RGL-FRLRRVEEAKEVFNCML 365 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~ 365 (499)
.|+...... +-+...|.-++.+|...|.+.+|.-+-...++.. +.+..+...+. ..| ....--++|..++++..
T Consensus 356 aFR~Aq~La--p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 356 AFRTAQMLA--PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHhcc--hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 999887654 5688999999999999999999988777766543 33444443331 122 22334588999999888
Q ss_pred hCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010853 366 GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 440 (499)
+.. +.-....+.+...|...|..+.+..+++.... ..||....+.|.+.+...+.+++|.+.|......++.
T Consensus 432 ~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 432 KIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred ccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 753 22345677888899999999999999999865 3678889999999999999999999999998876533
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=2.3e-07 Score=84.59 Aligned_cols=391 Identities=13% Similarity=0.074 Sum_probs=255.2
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcC
Q 010853 61 VLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 140 (499)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 140 (499)
|...+++.....+...++.+.++. ..+.....-.+...|+-++|......-...++ .+.+.|..+.-.+....
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK 89 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDK 89 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCcc------chhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhh
Confidence 346788999999888888866554 23444445556778999999999888877655 56678888888888889
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhcCCCHHHHHHHH
Q 010853 141 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDLEKARKVL 219 (499)
Q Consensus 141 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 219 (499)
++++|++.|......+.. |...|.-+.-.-+..++++..........+. .| ....|..++.++.-.|+...|..++
T Consensus 90 ~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987543 6677776666666778888877777776663 34 4456788888888999999999999
Q ss_pred HHHHhCCC-CCchhhHHHH------HHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 220 QFMLSKKD-VDRTRICNIY------LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
+...+... .|+...+... .......|..+.|.+.+......-+. ....-..-...+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 99986653 4554444332 34455678888888887665543221 2222344566788899999999999999
Q ss_pred hhCCCCCCCHHHHHHHH-HHHHccCCHHHHH-HHHHHHhccCCCCCchhhHHHH-HHHHHhcCCHHHHHHHHHHHhhCCC
Q 010853 293 VAGKFCAPDAVTFTTII-FGLLNVGRIQEAL-NLLYQVMPQRGYSPGIVTYNAV-LRGLFRLRRVEEAKEVFNCMLGIGV 369 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~ 369 (499)
... .||...|...+ .++.+-.+..++. .+|.. .... .|....-..+ +.......-.+..-.++..+.+.|+
T Consensus 246 l~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~-ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 246 LER---NPDNLDYYEGLEKALGKIKDMLEALKALYAI-LSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred Hhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH-Hhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 986 46666655544 4444444445555 44443 2222 2222111111 1111122234455667777788887
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHH----HHHhcC----------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFW----DDIVWP----------SNIHDNYVY--AAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~----------~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~ 433 (499)
++-. ..+...|-.....+-.+++. ..+... .-.|....| -.++..+-+.|+++.|..+++.
T Consensus 320 p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 6533 33333332222211111111 111111 013444444 4567788899999999999999
Q ss_pred HHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 434 LVDSGVTPNIV-CYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 434 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.+++ .|+.. .|..=.+.+.+.|+.++|..++++..+..
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 9887 55543 45555678999999999999999998743
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=2.6e-07 Score=85.90 Aligned_cols=429 Identities=13% Similarity=-0.004 Sum_probs=279.8
Q ss_pred hcCChHHHHHH----HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 28 ITGEMDVAYKV----FDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 28 ~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
-....+++... +.++....+.-++..|..+.-+....|+++.+.+.|++... ..--..+.|+.+...+..
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~------~~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP------FSFGEHERWYQLALSYSA 369 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH------hhhhhHHHHHHHHHHHHH
Confidence 33444555433 23333334456888899999999999999999887766543 223356788889999999
Q ss_pred CCCHhHHHHHHHhccCCCCCC-chhhHHHHHHHHHh-cCChhhHHHHHHHHHhc--CC--CCChhhHHHHHHHHHcc---
Q 010853 104 EGYVNEVFRIAEDMPQGKSVN-EEFACGHMIDSLCR-SGRNHGASRVVYVMRKR--GL--TPSLVSYNSIVHGLCKH--- 174 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~--g~--~p~~~~~~~l~~~~~~~--- 174 (499)
.|.-..|..+++........| +...+-..-..|.+ .+..++++++-.+.... +. ......|..+.-+|...
T Consensus 370 ag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~ 449 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ 449 (799)
T ss_pred hccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc
Confidence 999999999999876555333 34444433344443 46677777777666652 11 12344555555555432
Q ss_pred --------CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 175 --------GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 175 --------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
....++++.+++.++.+. -|+.....+.--|+..++++.|.+..++..+-+...+...|..+...+...++
T Consensus 450 a~~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 450 ANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 123567888888877543 24444444555678889999999999999988788889999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--------------------------CCC-CC
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA--------------------------GKF-CA 299 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~-~~ 299 (499)
+..|+.+.+.....-.. |-.....-+..-...++.++++.....+.. ... ..
T Consensus 529 ~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred hHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 99999999876654111 111111111122223444444433222211 000 01
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 010853 300 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA 371 (499)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 371 (499)
....++..+.......+ ..+. +...++...+.|.. ..|......+.+.+..++|...+.+..... +.
T Consensus 608 ~a~s~sr~ls~l~a~~~--~~~~--se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l 682 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQL--KSAG--SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PL 682 (799)
T ss_pred ccchhhHHHHHHHHhhh--hhcc--cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hh
Confidence 11223333322222111 1100 00112222223322 345666777888899999998888887753 55
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH--FLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l 449 (499)
....|......+...|..++|.+.|......++. ++.+..++..++.+.|+..-|.. ++..+.+.+.. +...|..+
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~L 760 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYL 760 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 6677777778888999999999999998766544 55678999999999998877777 99999998744 88899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 010853 450 IDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+.+.|+.+.|.+.|+...+
T Consensus 761 G~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 761 GEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHccchHHHHHHHHHHHh
Confidence 9999999999999999998876
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.4e-08 Score=93.22 Aligned_cols=243 Identities=19% Similarity=0.149 Sum_probs=122.0
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHhC-------CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-----CC-C
Q 010853 197 HTYKVLVEGLCGESDLEKARKVLQFMLSK-------KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-----QC-Q 263 (499)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 263 (499)
.+...+...|...|+++.|+.++++.+.. ..+.-....+.+...|...+++.+|..+|+++... |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444566666666666666666655432 11111223444566677777777777777666542 11 1
Q ss_pred C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh-hH
Q 010853 264 P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV-TY 341 (499)
Q Consensus 264 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~ 341 (499)
| -..+++.|..+|.+.|++++|...++...+- +++.. ....|.+. .+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~--~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLL--GASHPEVAAQL 328 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhh--ccChHHHHHHH
Confidence 1 2345666777788888887777777655431 10000 00011111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC-----CC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CCC---CC
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGI-----GV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNI---HD 407 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~ 407 (499)
+.+...|...+++++|..+++...+. |. +.-..+++.|...|...|++++|++++++++.. +.. -.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 23333344444455444444433221 10 011345566666666666666666666655421 111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 408 NYVYAAMIKGLCRSGKIHEAVHFLYELVD----SGVT-P-NIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...++.|...|.+.+++++|.++|.+... .|+. | ...+|..|...|...|++++|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22455566666666666666666555332 2211 1 22456666666777777777766666553
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=5.1e-09 Score=95.99 Aligned_cols=187 Identities=23% Similarity=0.264 Sum_probs=122.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccC----CC-CC-chhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CcCH-H
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQR----GY-SP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-----GV-VADS-T 374 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~ 374 (499)
+...|...+++.+|..+|++++... |- .| -..+++.|..+|.+.|++++|...++...+. |. .|.. .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 4555566666666666665543211 11 11 1234555555666777766666665554321 11 1222 2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhc---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVW---PSNIHD----NYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----G-VTP 441 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~ 441 (499)
.++.+...|...++++.|..+++...+ .-+.++ ..+++.|...|...|++++|.+++++++.. | ..+
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 456677788899999999999887642 112222 348999999999999999999999998753 1 122
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHHH----HCCC-CCC-HhHHHHHHHHhcccCCC
Q 010853 442 -NIVCYNVVIDGACKLSMKREAYQILREMR----KNGL-NPD-AVTWRILDKLHGNRGND 494 (499)
Q Consensus 442 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~g~-~p~-~~~~~~l~~~~~~~g~~ 494 (499)
....++.+...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|..+|.+.|+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~ 466 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNY 466 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccH
Confidence 24578889999999999999999998854 3332 123 46888999999999984
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=3.2e-08 Score=78.38 Aligned_cols=185 Identities=11% Similarity=0.028 Sum_probs=77.8
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHH
Q 010853 241 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320 (499)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (499)
|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++..... +.+....|....-+|..|++++
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChHH
Confidence 33344444444444444333221 33344444444444444444444444444432 2333444444444444444444
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
|...|.+.+......--..+|..+.-+..+.|+++.|...|++..+.. +-...+.-.+.....+.|++-.|...++...
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 444444444333222223344444444444444444444444444432 2223333344444444444444444444444
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
..+. ++..+.-..|+.-...|+.+.+-++
T Consensus 201 ~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 201 QRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred hccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 3332 3444444444444444444444333
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.19 E-value=5.2e-09 Score=90.44 Aligned_cols=223 Identities=14% Similarity=0.151 Sum_probs=126.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
....+.+++...|+.+.++ .++.... .|.......+...+...++-+.+..-+++.........+..........+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 3334445555555544332 2222222 44555444444444333445555555554443332122333333334456
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCC
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQ 388 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 388 (499)
...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.. .+.
T Consensus 113 ~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchh
Confidence 6678888887766431 245556667777888888888888888887753 23 334444444432 335
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQILR 467 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 467 (499)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++++..+.+.. ++.++..++-+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 78888888887644 4457777788888888888888888888887765533 566777777777777777 56677777
Q ss_pred HHHH
Q 010853 468 EMRK 471 (499)
Q Consensus 468 ~m~~ 471 (499)
++.+
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7765
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=8.4e-07 Score=79.29 Aligned_cols=425 Identities=12% Similarity=0.054 Sum_probs=219.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHc
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCR 103 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 103 (499)
+....|+++.|+..|-+.+... ++|++.|+.-..+++..|++++|..=..+.. ...|+ +-.|+....++.-
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~-------~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR-------RLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH-------hcCCchhhHHHHhHHHHHh
Confidence 3478899999999999999876 4589999999999999999999976332222 23333 3478888888889
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhh---HHHHHHHHHhc---CCCCChhhHHHHHHHHHccC--
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKR---GLTPSLVSYNSIVHGLCKHG-- 175 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~~-- 175 (499)
.|++++|+..|.+-.+..+ .+...++.+..++.......+ --.++..+... ........|..++...-+..
T Consensus 83 lg~~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred cccHHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999999999888765 455666666666511100000 00011111100 00001112222222221110
Q ss_pred -----ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh-cCCCHH----HHHHHHHHHHh-CCCCCchhhHHHHHHHHhcc
Q 010853 176 -----GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-GESDLE----KARKVLQFMLS-KKDVDRTRICNIYLRALCLI 244 (499)
Q Consensus 176 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 244 (499)
+.+...+..-.+...+. . .+...-.... ...... .......+..+ ........-...+..+..+.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred hhcccccHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 00011111100000000 0 0000000000 000000 00000000000 00000111244566777778
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHH-------HHHHHHHccCC
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFT-------TIIFGLLNVGR 317 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~ 317 (499)
.+++.+.+-+....+.. .+..-++....+|...|.+..+...-++..+.+. -...-|+ .+..+|.+.++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHh
Confidence 88888888888777765 3666667777788888888777777666655442 2222222 23445666778
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-HhHHHHHHHHHhcCChhhHHHHH
Q 010853 318 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
++.++..|.+.+.... .|+. ..+....+++........-.+ |.. .-...=...+.+.|++..|...|
T Consensus 314 ~~~ai~~~~kaLte~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHR-TPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HHHHHHHHHHHhhhhc-CHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 8888888887654432 2222 112223333433333333222 111 11112244555666777777777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 397 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
.++++..+. |...|....-+|.+.|.+..|++-.+..++.+ ++....|..=..++....++++|.+.|++.++ +.|
T Consensus 382 teAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp 457 (539)
T KOG0548|consen 382 TEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDP 457 (539)
T ss_pred HHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc
Confidence 766665533 55666666666777777666666666655543 11233344434445555666666666666665 335
Q ss_pred CHhHHH
Q 010853 477 DAVTWR 482 (499)
Q Consensus 477 ~~~~~~ 482 (499)
+..-+.
T Consensus 458 ~~~e~~ 463 (539)
T KOG0548|consen 458 SNAEAI 463 (539)
T ss_pred hhHHHH
Confidence 444333
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.15 E-value=1.1e-07 Score=75.46 Aligned_cols=209 Identities=14% Similarity=0.056 Sum_probs=170.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
+...+.-.|...|+...|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++.+... +-+....|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 45567778999999999999999999876 6678889999999999999999999999987655 3344566667777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCC-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGV-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
+|..|.+++|...|+.....-. ..-..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.+.....|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 8899999999999999887522 223567888888889999999999999999877655 44567788899999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
|..+++.....+. ++..+....|+.-...|+.+.+.+.=..+.+ .-|...-+..+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9999998887765 7888888888888889999888877766665 45666655544
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=5e-07 Score=82.71 Aligned_cols=202 Identities=13% Similarity=0.080 Sum_probs=116.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--hhHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVL 345 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll 345 (499)
....+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+.+.+......|+. ..|..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 33445566777888888888888887754 4556667777777888888888888887765443222332 2344566
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCC-CcCHHhH-H--HHHHHHHhcCChhhHHHH---HHHHhcCCC-CCCHHHHHHHHHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGV-VADSTTY-A--IVIDGLCESNQLDEAKRF---WDDIVWPSN-IHDNYVYAAMIKG 417 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~~~-~~~~~~~~~li~~ 417 (499)
..+...|++++|..++++...... .+..... + .++.-+...|....+.+. ......... ............+
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 677788888888888888754321 1111111 1 223333344433333332 111111100 1111222356677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTP--------NIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+...|+.++|..+++.+......+ ..........++...|++++|.+.+.....
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788889999999988887532210 111122223345678999999998888764
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=1.4e-07 Score=77.66 Aligned_cols=351 Identities=14% Similarity=0.078 Sum_probs=215.2
Q ss_pred hhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH-HH
Q 010853 19 VASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA-NL 97 (499)
Q Consensus 19 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~l 97 (499)
..+....+.+..++.+|++++..-.++. +.+...++.|..+|-...++..|...|.++-...|+. .-|. --
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~-------~qYrlY~ 84 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL-------EQYRLYQ 84 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-------HHHHHHH
Confidence 4455556688899999999999888864 2377788999999999999999998887765544432 2222 13
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHH--HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI--DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
..++-+.+.+.+|+++...|.... +...-..-+ ......+++..+..+.+.....| +..+.+...-...+.|
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~---~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNP---ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCH---HHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccc
Confidence 456677889999999998887642 111111112 22345788888998888877542 4455555555566899
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhH----HHHHHHHhccCChHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC----NIYLRALCLIKNPTELL 251 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~ 251 (499)
+++.|.+-|+...+.+---....|+..+.. .+.|+++.|.+...++.++|+...+..- .-.+. ....|++..
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~~-- 234 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTLV-- 234 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchHH--
Confidence 999999999988765433345667766544 4678999999999999887765433210 00000 000011100
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhcc
Q 010853 252 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 331 (499)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 331 (499)
|..++ =+..+|.-...+.+.|+++.|.+.+-+|..+.....|++|...+.-.-. .+++-+..+-+.-.+..
T Consensus 235 -----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 235 -----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ 305 (459)
T ss_pred -----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc
Confidence 00000 1223444455567889999999999998876655677887766543322 23333333333333444
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHh-cCChhhHHHHHHHH
Q 010853 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCE-SNQLDEAKRFWDDI 399 (499)
Q Consensus 332 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~ 399 (499)
..++ ..||..++-.||+..-++.|-+++.+-...-.. .+...|+ |++++.. .-..+++.+-++.+
T Consensus 306 nPfP--~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 306 NPFP--PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred CCCC--hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 4333 357888888899998889888887654332111 2333333 3344433 34555665555443
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=1.3e-07 Score=83.18 Aligned_cols=218 Identities=12% Similarity=-0.011 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhCCC-CC--chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKD-VD--RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 286 (499)
+..+.++.-+.+++.... .| ....|......+...|+.++|...|++..+..+. +...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555553211 11 1234555555566666666666666666655432 4566667777777777777777
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 287 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
..|+...+.. +.+..++..+..++...|++++|.+.+++.+... |+..........+...+++++|...+.....
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777766543 3345566666666667777777777776655433 2221111112223345567777777755443
Q ss_pred CCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc---CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 367 IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW---PSNI---HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.. .++... ..+ .....|+...+ ..++.+.+ ..+. .....|..+...+...|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 21 222211 122 22224444333 23333321 1110 122356666667777777777777777776654
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.12 E-value=9.4e-08 Score=84.09 Aligned_cols=228 Identities=14% Similarity=-0.003 Sum_probs=159.4
Q ss_pred cCChHHHHHHHHHHHhcCC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHH
Q 010853 244 IKNPTELLNVLVFMLQTQC-QP--DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 320 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (499)
.+..+.++.-+.+++.... .| ....|..+...|...|+.+.|...|++..+.. +.+...|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777775422 22 24557778888999999999999999998865 5678999999999999999999
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 321 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
|...|.+.++.. +.+..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...+++..
T Consensus 117 A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 117 AYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999977543 3345677788888899999999999999998864 333222222223445788999999997765
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS---GVT---PNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
... .++. |. ........|+..++ +.++.+.+. .+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~- 266 (296)
T PRK11189 193 EKL-DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN- 266 (296)
T ss_pred hhC-Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 332 2232 22 12233345555444 344444421 111 123578899999999999999999999999854
Q ss_pred CCCHhHHHH
Q 010853 475 NPDAVTWRI 483 (499)
Q Consensus 475 ~p~~~~~~~ 483 (499)
.||..-+..
T Consensus 267 ~~~~~e~~~ 275 (296)
T PRK11189 267 VYNFVEHRY 275 (296)
T ss_pred CchHHHHHH
Confidence 346555554
No 88
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=5.5e-07 Score=83.41 Aligned_cols=194 Identities=11% Similarity=0.038 Sum_probs=124.8
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
.+.+......|.+|+.+++.++.... -...|..+...|+..|+++.|.++|.+.- .++..+..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555667788888888888776432 34457778888888888888888886542 45667788888888
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 326 (499)
|+.|.++-.+.. |+......|..-..-.-+.|++.+|.+++-.+. .|+. .+.+|-+.|..++.++++.
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 888888776553 334455666666666777888888888776554 4543 4667788888888888776
Q ss_pred HHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 327 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 327 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
+..... -..|...+..-+-..|+...|++-|-+..+ |.+-+++|...+-++.|.++-
T Consensus 875 k~h~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChhh----hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 532111 122344455556666777777766654432 333444454555555544443
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=1.3e-06 Score=79.98 Aligned_cols=189 Identities=13% Similarity=0.036 Sum_probs=113.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH---HHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSL---TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA---NLVDS 100 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~ 100 (499)
...|+.+.+.+.+....... +++.. ........+...|++++|...+.++++..|.+ ...+. .....
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~------~~a~~~~~~~~~~ 89 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRD------LLALKLHLGAFGL 89 (355)
T ss_pred HhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc------HHHHHHhHHHHHh
Confidence 45567777666666655432 12221 12223345567888888888877777654332 22222 11111
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
....+..+.+.+.++...... .........+...+...|++++|...+++..+.... +...+..+..++...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHH
Confidence 223455556666665522211 122334444556777888888888888888877432 456677778888888888888
Q ss_pred HHHHHHHHhCCCC-CCc--ccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 181 YQLLEEGIQFGYL-PSE--HTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 181 ~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
...+++....... |+. ..|..+...+...|++++|..++++...
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888877664321 121 2344677778888888888888888753
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.08 E-value=3.8e-06 Score=87.28 Aligned_cols=374 Identities=11% Similarity=0.000 Sum_probs=221.2
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
....+...|++.+|............ -..............|+++.+..+++.+.......+..........+...|+
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~--~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQL--LRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHH--HHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34445556666666555444432110 0011111223345567777777776665322111233333444555567889
Q ss_pred hhHHHHHHHHHHhCCCC------CCc--ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCch----hhHHHHHHHHhcc
Q 010853 177 CMRAYQLLEEGIQFGYL------PSE--HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT----RICNIYLRALCLI 244 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 244 (499)
++++..++......--. +.. .....+...+...|+++.|...+++........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 99999988876542110 111 11222334456789999999999987653111111 2345566667789
Q ss_pred CChHHHHHHHHHHHhcCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CC-CHHHHHHHHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQC-----QPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----KFC-AP-DAVTFTTIIFGLL 313 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~~l~~~~~ 313 (499)
|++++|...+.+...... .....++..+...+...|+++.|...+++.... +.. .+ ....+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 999999999887764311 111234455667788899999999988776542 110 01 2333445566677
Q ss_pred ccCCHHHHHHHHHHHhccCC-CCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCcCHH--h--HHHHHHHHH
Q 010853 314 NVGRIQEALNLLYQVMPQRG-YSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG--VVADST--T--YAIVIDGLC 384 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~--~~~l~~~~~ 384 (499)
..|++++|...+.+...... ..+ ....+..+.......|+++.|...+....... ...... . ....+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 78999999988877543211 111 23344445566778899999999988875421 111111 1 011224445
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhc
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN-IVCYNVVIDGACKL 456 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~ 456 (499)
..|+.+.|...+............ ..+..+..++...|++++|...+++.... |..++ ..+...+..++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 688999999998776542221111 12346677888899999999999888753 22222 23566677788899
Q ss_pred CChHHHHHHHHHHHHC
Q 010853 457 SMKREAYQILREMRKN 472 (499)
Q Consensus 457 g~~~~a~~~~~~m~~~ 472 (499)
|+.++|...+.+..+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998763
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=4.8e-08 Score=84.52 Aligned_cols=222 Identities=14% Similarity=0.068 Sum_probs=119.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHH
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFC 277 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 277 (499)
...+.+++...|+++.+. .++.. +..|.......+...+...++.+.+..-+.+....... .+..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~-~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKK-SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-T-TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhcc-CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 344455555555544322 23322 22344444444444443333344444444333322222 12222222234455
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCC
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRR 353 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~ 353 (499)
..|++++|+++++.. .+.......+..|.+.++++.|.+.++.+- +. ..| .+...+..++.. .+.
T Consensus 114 ~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQ-QI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH-CC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH-hc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 567777777766532 345555666777777777777777777632 22 223 233344444332 235
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI-HEAVHFLY 432 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~ 432 (499)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+.. +..+...++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77888888887664 3567777777888888888888888888887765544 555666677777777766 56677777
Q ss_pred HHHHc
Q 010853 433 ELVDS 437 (499)
Q Consensus 433 ~~~~~ 437 (499)
++...
T Consensus 261 qL~~~ 265 (290)
T PF04733_consen 261 QLKQS 265 (290)
T ss_dssp HCHHH
T ss_pred HHHHh
Confidence 77765
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.8e-05 Score=71.80 Aligned_cols=387 Identities=11% Similarity=0.042 Sum_probs=207.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMI 133 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 133 (499)
+-+=++.+...+++++|.....+++... +-+...+..-+-++.+.+++++|+.+.+.-..... .+...|. -.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fE-KA 86 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFE-KA 86 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHH-HH
Confidence 3344567788899999998877776532 23456677777788999999999977665432111 1111111 22
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhcCCCH
Q 010853 134 DSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDL 212 (499)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 212 (499)
-+..+.+..++|+..++-.... +..+...-...+.+.|++++|+.+|+.+.+.+.+- +...-..++.+- --
T Consensus 87 Yc~Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~ 158 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AA 158 (652)
T ss_pred HHHHHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----Hh
Confidence 3345789999999998833322 34466777788899999999999999998765422 111111122111 11
Q ss_pred HHHHHHHHHHHhCCCCC--chhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-------CC------CHh-hHHHHHHHH
Q 010853 213 EKARKVLQFMLSKKDVD--RTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-------QP------DVI-TLNTVINGF 276 (499)
Q Consensus 213 ~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~------~~~-~~~~l~~~~ 276 (499)
-.+. +.+.. ...| +...+....-.+...|++.+|+++++...+.+. .- ... .-..+.-.+
T Consensus 159 l~~~-~~q~v---~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl 234 (652)
T KOG2376|consen 159 LQVQ-LLQSV---PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL 234 (652)
T ss_pred hhHH-HHHhc---cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence 1111 22222 2222 222333344556678999999999988732211 00 011 112344456
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH---HHHccCCHHH--HHHHHHHH-----------hccCCCCCchhh
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF---GLLNVGRIQE--ALNLLYQV-----------MPQRGYSPGIVT 340 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~ 340 (499)
...|+.++|..++..+.+.. .+|........+ +.....++.+ ++..++.. +... ......
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~--qk~~i~ 310 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK--QKQAIY 310 (652)
T ss_pred HHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHH
Confidence 77899999999999998876 455432222211 1111111111 11111110 0000 001111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh--cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE--SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
.|..+-.+ ..+..+.+.++...+.. ..|.. .+..++..+.+ ......+..++...-+........+.-.++...
T Consensus 311 ~N~~lL~l-~tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 311 RNNALLAL-FTNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11111111 12233344443333322 12332 33333333322 224667777777776555444455666677777
Q ss_pred HhcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 419 CRSGKIHEAVHFLY--------ELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 419 ~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...|+++.|.+++. .+.+.+..| .+...++..+.+.++.+.|..++.+..
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 88888888888888 444444333 455556666777776666666666554
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.5e-07 Score=77.52 Aligned_cols=331 Identities=13% Similarity=0.079 Sum_probs=200.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHH-HHHH
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKV-LVEG 205 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 205 (499)
--+++.+..+.+..+++.|++++....++..+ +......|..+|....++..|-..|+++-.. .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 34667777788889999999999888877432 6777888888999999999999999988663 354444432 2445
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
+.+.+.+..|.++...|... ......+...-.......+++..+..++++....+ +..+.+...-...+.|+++.|
T Consensus 88 LY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 66778888888888887532 11111222222233345677777777776654322 344455555556778888888
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch-------------h--------hHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-------------V--------TYNAV 344 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~--------~~~~l 344 (499)
.+-|+...+-++ -.....|+..+ +..+.++++.|++...+++ +.|++..+ . .-+.+
T Consensus 164 vqkFqaAlqvsG-yqpllAYniAL-aHy~~~qyasALk~iSEIi-eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 164 VQKFQAALQVSG-YQPLLAYNLAL-AHYSSRQYASALKHISEII-ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHhhcC-CCchhHHHHHH-HHHhhhhHHHHHHHHHHHH-HhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 888888887766 34455666554 4446678888888887754 55654211 1 11223
Q ss_pred HHH-------HHhcCCHHHHHHHHHHHhhC-CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 345 LRG-------LFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 345 l~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+.+ +.+.|+++.|.+-+..|--+ ....|+.|...+.-.- ..+++....+-+.-+...++ ....||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 322 34567777777777777422 1234555555443221 23444444444555544444 34567777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHh-cCChHHHHHHHHHHH
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACK-LSMKREAYQILREMR 470 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~ 470 (499)
.||++.-++-|-+++.+-...-. -.+...|+ |+.++.. .-..+++.+-++.+.
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 88888888888777654322111 11223333 3344433 345666666665553
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.3e-05 Score=75.66 Aligned_cols=400 Identities=12% Similarity=0.068 Sum_probs=196.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
-+.+++..-+..++.....|. -++.++|+|...|...++-.+- ++.. +..-| +..+.-||...+
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~------fLke-----N~yYD----s~vVGkYCEKRD 912 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER------FLKE-----NPYYD----SKVVGKYCEKRD 912 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH------hccc-----CCcch----hhHHhhhhcccC
Confidence 567778888888888888884 6888999999999987765543 2211 11112 224555666655
Q ss_pred HhHHHHHHHhccCC----CCCCchhhHHHHHHHHHhcCChhhHH-----------HHHHHHHhcCC--CCChhhHHHHHH
Q 010853 107 VNEVFRIAEDMPQG----KSVNEEFACGHMIDSLCRSGRNHGAS-----------RVVYVMRKRGL--TPSLVSYNSIVH 169 (499)
Q Consensus 107 ~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~~~~g~--~p~~~~~~~l~~ 169 (499)
+--|.-.+++-.-. ++......|....+-+.+..+.+--. ++++.....++ ..|+.....-+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 54443333221100 11122234444445455555443322 33344444332 235566667778
Q ss_pred HHHccCChhHHHHHHHHHHhCCCCC--CcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh
Q 010853 170 GLCKHGGCMRAYQLLEEGIQFGYLP--SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 247 (499)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (499)
++...+-..+-.+++++++-.+..- +...-+.++-.. -.-+..++.++.+++..- ..|+ +.......+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdny-Da~~------ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNY-DAPD------IAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccC-Cchh------HHHHHhhhhHH
Confidence 8888888888888888876432111 122223333332 333555566666665422 1221 12233334445
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
++|..+|+... .+....+.++. .-+..+.|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 55555554431 22333333332 1233444444433322 223455555555555555555554432
Q ss_pred HhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC
Q 010853 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 407 (499)
Q Consensus 328 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (499)
. .|+..|..++..+.+.|.+++....+...++..-.|.. -+.|+-+|++.++..+.++++. .||
T Consensus 1130 ---a----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN 1193 (1666)
T KOG0985|consen 1130 ---A----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPN 1193 (1666)
T ss_pred ---c----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCC
Confidence 1 24445555555555555555555555544444333322 2344445555555444433321 122
Q ss_pred HHH--------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 010853 408 NYV--------------------------YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 408 ~~~--------------------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (499)
..- |..|...+...|+++.|.+.-++. .+..||..+-.+|...+.+.-
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhH
Confidence 223 444555555555555554443332 244566666666655544432
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHhcccC
Q 010853 462 AYQILREMRKNGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 462 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 492 (499)
| +|.-..+.....-...|+..|...|
T Consensus 1268 A-----QiCGL~iivhadeLeeli~~Yq~rG 1293 (1666)
T KOG0985|consen 1268 A-----QICGLNIIVHADELEELIEYYQDRG 1293 (1666)
T ss_pred H-----HhcCceEEEehHhHHHHHHHHHhcC
Confidence 2 2333333444555556666665555
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=1.6e-05 Score=82.70 Aligned_cols=340 Identities=13% Similarity=-0.029 Sum_probs=212.3
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC------CCCh--hhHHHHHHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL------TPSL--VSYNSIVHG 170 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~------~p~~--~~~~~l~~~ 170 (499)
......|+++.+..+++.+.......+..........+...|++++|..++......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777777764322212223333445556778999999999987754310 1111 122233345
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CCc--hhhHHHHHHHH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSE----HTYKVLVEGLCGESDLEKARKVLQFMLSKKD---VDR--TRICNIYLRAL 241 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~ 241 (499)
+...|++++|...+++....-...+. ...+.+...+...|+++.|...+++...... .+. ......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56799999999999987663111111 2334556667789999999999988764211 111 22445566778
Q ss_pred hccCChHHHHHHHHHHHhc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCCHHHHHHHHHH
Q 010853 242 CLIKNPTELLNVLVFMLQT----QCQ--P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPDAVTFTTIIFG 311 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~ 311 (499)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ........+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998776542 211 1 12334455666777899999999988775421 101123445556677
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhH-----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHH
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTY-----NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGL 383 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~ 383 (499)
+...|++++|.+.+.+.............+ ...+..+...|+.+.|..++............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999887764321111111111 11223445678999999998776543211111 1134567788
Q ss_pred HhcCChhhHHHHHHHHhcC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 384 CESNQLDEAKRFWDDIVWP----SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
...|++++|...++++... +... ...+...+..++...|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999887642 2222 22356667788899999999999999998754
No 96
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.92 E-value=3.6e-05 Score=69.24 Aligned_cols=411 Identities=9% Similarity=0.043 Sum_probs=223.3
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchh
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEF 127 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 127 (499)
+-|..+|+.|++-+..+ ..++++..++++.. ...-.+..|..-+....+.++++...++|.+....- .+..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~------~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN------VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc------cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHh
Confidence 55788888888877666 88888877666543 233455677777788888888888888888876543 3455
Q ss_pred hHHHHHHHHHh-cCChhh----HHHHHHH-HHhcCCCCCh-hhHHHHHHHH---------HccCChhHHHHHHHHHHhCC
Q 010853 128 ACGHMIDSLCR-SGRNHG----ASRVVYV-MRKRGLTPSL-VSYNSIVHGL---------CKHGGCMRAYQLLEEGIQFG 191 (499)
Q Consensus 128 ~~~~l~~~~~~-~~~~~~----A~~~~~~-~~~~g~~p~~-~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~ 191 (499)
.|...++--.+ .|+... ..+.|+. +.+.|..+-. ..|+..+..+ ..+.+.+...++|+++...-
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 66655543222 233332 2233433 3334543322 2344444332 22334555666666665522
Q ss_pred CCCCcccHHHHHHH-------------HhcCCCHHHHHHHHHHHHh--CCCCCchhh---------------HHHHHHHH
Q 010853 192 YLPSEHTYKVLVEG-------------LCGESDLEKARKVLQFMLS--KKDVDRTRI---------------CNIYLRAL 241 (499)
Q Consensus 192 ~~~~~~~~~~l~~~-------------~~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~ 241 (499)
+.-=...|+-.... --+...+..|.++++++.. +|..-...+ |..+|.-=
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE 247 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE 247 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 11111222222110 0012234444455544431 122111111 11111110
Q ss_pred hccC------Ch--HHHHHHHHHHH-hcCCCCCHhhH-----HHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCCC
Q 010853 242 CLIK------NP--TELLNVLVFML-QTQCQPDVITL-----NTVINGFCKMGR-------IEEALKVLNDMVAGKFCAP 300 (499)
Q Consensus 242 ~~~~------~~--~~a~~~~~~~~-~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~ 300 (499)
-..+ .. ....-.+++.+ -.+..|+.... ...-+.+...|+ .+++..+++....... ..
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~-~~ 326 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL-KE 326 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH-HH
Confidence 0000 00 00111111111 11111111100 001112222332 3444444444433211 22
Q ss_pred CHHHHHHHHHHHH---ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-CHHhH
Q 010853 301 DAVTFTTIIFGLL---NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTY 376 (499)
Q Consensus 301 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 376 (499)
+..+|..+...-- .-+..+.....+.+........|+. +|...|+...+..-++.|..+|.+..+.+..+ +..++
T Consensus 327 ~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 327 NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 3333333322111 1113455566666655555556654 67788888888889999999999999987766 67778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHH
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--VCYNVVIDGAC 454 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 454 (499)
++++..|| .++.+-|.++|+.=.+.- ..++.--...+..+...++-..+..+|++....++.|+. ..|..++.-=.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES 483 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYES 483 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHH
Confidence 88887665 578899999998765432 223334467888888999999999999999988666554 68999999889
Q ss_pred hcCChHHHHHHHHHHHH
Q 010853 455 KLSMKREAYQILREMRK 471 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~ 471 (499)
.-|+...+.++-+++..
T Consensus 484 ~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 484 NVGDLNSILKLEKRRFT 500 (656)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999888754
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.1e-07 Score=82.67 Aligned_cols=224 Identities=15% Similarity=0.087 Sum_probs=130.4
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
+.+.|++.+|.-.|+..++ ..+.....|..+.......++-..|+..+++.++..+. +....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVk-qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVK-QDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHh-hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 4567777777777777764 35556667777777777777777777777777776543 666666777777777777777
Q ss_pred HHHHHHHhhCCCCCCCHHHHHH-------HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTT-------IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
++.|+....... |-...-.. .-..+..........++|-++....+..+|+.....|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 777777654321 10000000 001111222233344445554445554445555555555566666677777
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+.|+..+... +-|..+||.|...++...+.++|..-|+++++..+.. +.+...|.-.|...|.+++|.+.|-..+
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 7776666643 3455566666666666666667777666665432221 1233345556666666666666665544
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=6.6e-05 Score=71.09 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
...|.+++|..+|++-.+. ..|=..|-..|.+.+|.++.+. . +--.-..||..-..-+-..++
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~-------~-DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAET-------K-DRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhh-------c-cceehhhhHHHHHHHHHhhcc
Confidence 6778888888888887763 2333445557888888764321 1 222234566666777777788
Q ss_pred HhHHHHHHHhccCCC----------C---------CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010853 107 VNEVFRIAEDMPQGK----------S---------VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 167 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~----------~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 167 (499)
.+.|++.|++..... + ..|...|.--...+-..|+.+.|+.+|...++ |-++
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 888888877643211 0 01122222222223344555555555554432 3455
Q ss_pred HHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 168 VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
++..+-+|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+..
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 56666667777776665442 255566677888888888888888887654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.90 E-value=2.7e-05 Score=65.92 Aligned_cols=195 Identities=11% Similarity=0.079 Sum_probs=118.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 203 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
+..+...|+...|+.....+++ -.+-+...+..-..+|...|++..|+.-++...+.... ++.++--+-..+...|+.
T Consensus 162 l~s~~~~GD~~~ai~~i~~llE-i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~ 239 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLE-IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDA 239 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHh-cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhH
Confidence 4445566777777777777763 23444556666677777777777777666665544332 444555566666777777
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHH-------------HHHHHccCCHHHHHHHHHHHhccCCCCC--chhhHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTI-------------IFGLLNVGRIQEALNLLYQVMPQRGYSP--GIVTYNAVLRG 347 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~ 347 (499)
+.++...++..+. .||...+-.. +......+++.++++..+..|+...-.+ ....+..+-.+
T Consensus 240 ~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 240 ENSLKEIRECLKL---DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHHcc---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 7777777776654 3443222111 1223445666677776666664432111 11223344445
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
+...+++.+|++...+..... +.|..++.--..+|.-...++.|+.-|+.+.+.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 556677888888887777653 3447777777777777778888888887776543
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=2.6e-05 Score=66.01 Aligned_cols=318 Identities=13% Similarity=0.085 Sum_probs=204.7
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh-HHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS-YNSIV 168 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 168 (499)
+..-..-+...+...|++..|+.-|....+.++ .+-.++-.-...|...|+...|+.=|....+. +||-.. -..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 344455566666677777777777766665443 12222223344566666666666666666665 555322 22233
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChH
Q 010853 169 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 248 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (499)
..+.++|.++.|..-|+..+++. |+..+ ...++.+.--.++-. .....+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence 45556677777776666666543 32211 111221111111111 1223345566789999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 328 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 328 (499)
.|+.....+++..+ .|...+..-..+|...|++..|+.=++...+.. ..+..++-.+-..+...|+.+.++..+.+.
T Consensus 173 ~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 173 NAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999988764 478888888999999999999998888777654 456666777778888899999999888886
Q ss_pred hccCCCCCchhhH----HHH---------HHHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHHHhcCChhhH
Q 010853 329 MPQRGYSPGIVTY----NAV---------LRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEA 392 (499)
Q Consensus 329 ~~~~~~~~~~~~~----~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a 392 (499)
++ +.||.... -.+ +......++|.++.+-.+...+....... ..+..+-.++...+++.+|
T Consensus 250 LK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 250 LK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred Hc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 64 35654321 111 12234567788888888877776432122 3445566777888999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
++...++....+. |..++.--..+|.-...++.|+.-|+...+.+
T Consensus 327 iqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 327 IQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 9999998754322 47778888888988889999999998887754
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=1.2e-05 Score=75.01 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=88.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 203 VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 203 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
+.+....++|.+|+.+++.+... ...+..|..+..-|+..|+++.|.++|.+. ..++..|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 33444445555555555554322 222334444555555555555555555321 1234445555555555
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (499)
+.|.++-++.... ......|.+-..-+-+.|++.+|.++|-.. -.|+ ..|..|-+.|..+..+++..
T Consensus 808 ~da~kla~e~~~~---e~t~~~yiakaedldehgkf~eaeqlyiti-----~~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP---EATISLYIAKAEDLDEHGKFAEAEQLYITI-----GEPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHhcCc---hhHHHHHHHhHHhHHhhcchhhhhheeEEc-----cCch-----HHHHHHHhhCcchHHHHHHH
Confidence 5555554444321 223334444444444555555555544221 0222 23344555555555555444
Q ss_pred HHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 363 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
+-... .-..|...+..-+-..|++..|+..|-+.. -|.+-++.|-..+-+++|.++-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 33221 112233444445555566666655554432 1444455555555555555443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=3.6e-06 Score=83.61 Aligned_cols=238 Identities=9% Similarity=0.029 Sum_probs=165.7
Q ss_pred CCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 010853 226 KDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQP---DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 301 (499)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (499)
+.+.+...|-.+|......++.++|.++.++.+.. +++- -...|.++++.-..-|.-+...++|+++.+-. ..
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc---d~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC---DA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc---ch
Confidence 34444556666666777777777777777666543 1111 23356667776667777788888888888632 23
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cCHHhHHHHH
Q 010853 302 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-ADSTTYAIVI 380 (499)
Q Consensus 302 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 380 (499)
-..|..|...|.+.+.+++|.++++.|++..+ -....|...+..+.+.++-+.|..++.+..+.-.+ -......-.+
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHH
Confidence 45577888888888888888888888777665 45567888888888888888888888888765211 1233445556
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCC
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--VCYNVVIDGACKLSM 458 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 458 (499)
..-.+.|+.++++.+|+......++ -...|+.+|+.-.++|+.+.+..+|++.+..++.|-. ..|...+..=-..|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 6667889999999999888765544 4557999999999999999999999999988877654 356666655555677
Q ss_pred hHHHHHHHHHH
Q 010853 459 KREAYQILREM 469 (499)
Q Consensus 459 ~~~a~~~~~~m 469 (499)
-+.+..+=.++
T Consensus 1687 e~~vE~VKarA 1697 (1710)
T KOG1070|consen 1687 EKNVEYVKARA 1697 (1710)
T ss_pred hhhHHHHHHHH
Confidence 65555444444
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=5.2e-06 Score=82.54 Aligned_cols=242 Identities=13% Similarity=0.065 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC----chhhHHHHHHHHhccCChHHHHHHH
Q 010853 179 RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD----RTRICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
.|..+-+..+. -+-+...|...|......++++.|.++.++.+..-... ...+|.++++.-...|.-+...++|
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 44444443333 23345678889999999999999999999988542111 1347888888888888889999999
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
++..+..- ....|..|...|.+.+..++|.++++.|.+.- .-....|...+..+.+.++-+.|..++.+++....-
T Consensus 1521 eRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99887632 34578899999999999999999999999875 357788999999999999999999999998866533
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH--HHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--VYA 412 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~ 412 (499)
.-........+..-.+.|+.+++..+|+...... +-....|+..++.-.+.|+.+.++.+|+++...++.|-.. .|.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 2234445555666678999999999999998764 4567789999999999999999999999999887765332 455
Q ss_pred HHHHHHHhcCCHHHH
Q 010853 413 AMIKGLCRSGKIHEA 427 (499)
Q Consensus 413 ~li~~~~~~g~~~~a 427 (499)
-.+..--..|+-..+
T Consensus 1676 kwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHhcCchhhH
Confidence 555555555654433
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.8e-06 Score=80.04 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=167.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc
Q 010853 200 KVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM 279 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 279 (499)
..+...+.+.|-...|..+++++. .|..++.+|+..|+..+|..+..+..++ +|+...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345667788888888988888775 5778889999999999999988888773 67888888888887777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 010853 280 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 359 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 359 (499)
.-+++|.++.+....+ +-..+.....+.++++++.+.++..++.+.. ...+|-....+..+.++++.|.+
T Consensus 471 s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHH
Confidence 7788888888865432 1222222334478899999999887766644 34567777777788899999999
Q ss_pred HHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 360 VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.|..-.... +-+...||.+-.+|.+.++..+|...+.+..+.+. -+..+|...+....+.|.+++|++.+.++.+
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 998887753 44567899999999999999999999999987773 3556788888888899999999999888875
No 105
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=2.8e-06 Score=78.89 Aligned_cols=220 Identities=11% Similarity=0.045 Sum_probs=179.2
Q ss_pred CchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 010853 229 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 308 (499)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (499)
|-...-..+...+...|-...|..+++.+ ..|..++.+|...|+..+|..+..+-.+. +||+..|..+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~L 463 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLL 463 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHh
Confidence 33345556777888889999999998754 46778899999999999999999888773 7999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
.+......-+++|.++.+..+.. .-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 99988888899999988775432 11122222345789999999999887765 5567788888888899999
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
+..|.+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999998755433 56689999999999999999999999999988 44777888888889999999999999998
Q ss_pred HHH
Q 010853 469 MRK 471 (499)
Q Consensus 469 m~~ 471 (499)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 864
No 106
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=5.7e-06 Score=77.91 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=128.0
Q ss_pred HHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc-C--------CCCChhhHHHHHHHH
Q 010853 101 LCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-G--------LTPSLVSYNSIVHGL 171 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g--------~~p~~~~~~~l~~~~ 171 (499)
|...|+.|.|.+-++-++. ..+|..+.++|.+..+.+-|.-.+..|... | -.|+ .+=.-..-..
T Consensus 738 yvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 4556777777666666543 246667777777777766666555555321 0 0111 1111122223
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 251 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (499)
...|..++|+.+|.+-+. |..|=..|-..|.|++|.++-+.- +..--..+|.....-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~---DRiHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETK---DRIHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhc---cceehhhhHHHHHHHHHhhccHHHHH
Confidence 356667777777766554 233344455666777666665432 11112234555555555556666665
Q ss_pred HHHHHH----------HhcC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 010853 252 NVLVFM----------LQTQ---------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 252 ~~~~~~----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (499)
+.|++. +... -..|...|......+-..|+.+.|+.++...++ |-+++...
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 555422 1111 012445555566666667888888887776553 44566666
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 365 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (499)
+-.|+.++|-++-++ .-|......+.+.|-..|++.+|..+|.+.+
T Consensus 949 C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677777777776544 1244445566777777777777777777654
No 107
>PLN02789 farnesyltranstransferase
Probab=98.80 E-value=1.2e-05 Score=70.76 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=109.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH--HHH
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI--QEA 321 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a 321 (499)
+..++|+.+..++++..+. +..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.+.++. +++
T Consensus 51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhHHH
Confidence 4445555555555544322 3334444434444444 3566666666655543 33444444443334444432 445
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc---CCh----hhHHH
Q 010853 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQL----DEAKR 394 (499)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~ 394 (499)
+..+.+++... +-+..+|+...-++...|+++++++.++++++.+ +-|...|+....++.+. |.. ++...
T Consensus 128 l~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 55555544333 3344555555555555666666666666666654 33444554444443332 212 34455
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------------
Q 010853 395 FWDDIVWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS------------- 457 (499)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 457 (499)
+..+++...+. |...|+.+...+... ++..+|.+.+.+..+.++. +......|+..|+...
T Consensus 205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 55555544433 455566555555552 3334566666665554322 4556666666665421
Q ss_pred -----ChHHHHHHHHHHH
Q 010853 458 -----MKREAYQILREMR 470 (499)
Q Consensus 458 -----~~~~a~~~~~~m~ 470 (499)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 2366777777773
No 108
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=3.1e-05 Score=74.71 Aligned_cols=433 Identities=10% Similarity=-0.005 Sum_probs=208.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
...|....+..+|.+.|+...+.+ ..+..........|+...+++.|..+....-+.-+ ...-...|..+.-.+.
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~----a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAP----AFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhch----HHHHHhhhhhcccccc
Confidence 333344446666666666666543 23445555666666666666666554222111111 1111112222444455
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH--HHHHHccCChhHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI--VHGLCKHGGCMRA 180 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l--~~~~~~~~~~~~a 180 (499)
+.++...|+.-|+...+..+ .|...|..+..+|.+.|++..|.++|.+.... .|+. +|... .-.-+..|.+.++
T Consensus 574 ea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred CccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 66666666666666666554 55667777777777777777777777766654 2221 22211 1223346666666
Q ss_pred HHHHHHHHhC------CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH-------hCCCCCchhhHHHHHHHHh---cc
Q 010853 181 YQLLEEGIQF------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML-------SKKDVDRTRICNIYLRALC---LI 244 (499)
Q Consensus 181 ~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~---~~ 244 (499)
+..+...... +..--..++..+...+...|-..++..+++.-. ......+...|-.+-.++. ..
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 6666655432 111112233333333333333333333333221 1111111112221111111 10
Q ss_pred C-C-h-HHHHHHHH-HHHhcCCCC--------------------CHhhHHHHHHHHHh----c----CCHHHHHHHHHHH
Q 010853 245 K-N-P-TELLNVLV-FMLQTQCQP--------------------DVITLNTVINGFCK----M----GRIEEALKVLNDM 292 (499)
Q Consensus 245 ~-~-~-~~a~~~~~-~~~~~~~~~--------------------~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~ 292 (499)
. + + .....++. +....+.-+ +..+|..+...|.+ . .+...|...+...
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 0 0 0 00000110 011111111 12223233222222 1 1223455555555
Q ss_pred hhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 010853 293 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 372 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (499)
.+.. ..+..+|+.|.-. ...|.+.-+.-.|-+... ..+....+|..+.-.+....+++.|...|...+... +.+
T Consensus 810 V~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~n 883 (1238)
T KOG1127|consen 810 VSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLN 883 (1238)
T ss_pred HHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chh
Confidence 5433 4456666665444 444555555544433221 123345566666666777888999999998888764 445
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHH----hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------cCC
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDI----VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD---------SGV 439 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~ 439 (499)
...|-.........|+.-+...+|..- ...|-.++..-|-........+|+.++-+...+++.. .+.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 555555554455567766666666552 1233344544455555555666766655444333321 122
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 440 TPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+-+...|.+.....-+.+.++.|.+...+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345667777777777777777777766653
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.00024 Score=69.01 Aligned_cols=395 Identities=11% Similarity=0.064 Sum_probs=190.8
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVL--PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 94 (499)
.+...|..++...+-+. +++.++..+.+++ .|+..-+..+.++-..+-..+-+++++++.-. .+.++-+...-
T Consensus 950 ~D~~LW~~VL~e~n~~r--RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEENPYR--RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhccChHH--HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---Ccccccchhhh
Confidence 34444555553333222 3455555554432 25556666777777777777777766665432 11222222222
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-----------------
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL----------------- 157 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~----------------- 157 (499)
+.|+-...+ -+..+..+..+++-..+. |+ +...+...+-+++|..+|++....+-
T Consensus 1025 nLLiLtAik-ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1025 NLLILTAIK-ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYE 1096 (1666)
T ss_pred hhHHHHHhh-cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHH
Confidence 223322222 233344444444443332 22 22334444555555555554321100
Q ss_pred ----CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 158 ----TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 158 ----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
--.+..|..+..+-...|...+|.+-|-+. -|+..|..+++...+.|.+++..+++....++...|. +
T Consensus 1097 fAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--i 1168 (1666)
T KOG0985|consen 1097 FAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--I 1168 (1666)
T ss_pred HHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--c
Confidence 002334455555555555555544444221 2344455555555555555555555554443333332 2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
=..++-+|++.++..+.++++. -|+......+.+-|...|.++.|.-++.. ..-|..+...+.
T Consensus 1169 d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1169 DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN----------VSNFAKLASTLV 1231 (1666)
T ss_pred hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH----------hhhHHHHHHHHH
Confidence 2344445555555444444331 23444444455555555555555444432 223555555566
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..|++..|.+.-++ ..+..||..+-.+|...+.+..| +|...++.....-..-++..|...|-+++..
T Consensus 1232 ~LgeyQ~AVD~aRK-------Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElI 1299 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARK-------ANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELI 1299 (1666)
T ss_pred HHHHHHHHHHHhhh-------ccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHH
Confidence 66666666554433 12445666666666555444332 2333444445556677788888888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC------CChhhHHHHHHHHHhcCChHHHH
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVT------PNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
.+++...... ......|+.|.-.|.+- ++++..+.++-.-.+ +++ -....|+-++-.|.+-..++.|.
T Consensus 1300 sl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1300 SLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 8877663221 11333566666666654 345555444433321 110 02245666666666666665543
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=1.1e-08 Score=55.91 Aligned_cols=32 Identities=44% Similarity=0.877 Sum_probs=18.8
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 438 GVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
|+.||..||+.||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555666665555566665565555555
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.9e-06 Score=76.64 Aligned_cols=254 Identities=14% Similarity=0.084 Sum_probs=182.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC-CcccHHHHHHHHhcCCC
Q 010853 133 IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESD 211 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 211 (499)
..-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+.+..+. .| +......|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhh
Confidence 34467889999999999998888544 6788999999988999888999999888774 44 45667777788888888
Q ss_pred HHHHHHHHHHHHhCCCCC--------chhhHHHHHHHHhccCChHHHHHHHHHHH-hcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 212 LEKARKVLQFMLSKKDVD--------RTRICNIYLRALCLIKNPTELLNVLVFML-QTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
-..|...++..+....+- +...-.. ..+..........++|-++. +.+..+|..+...|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 888888887765322100 0000000 12222333444455554444 445456788888888889999999
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVF 361 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~ 361 (499)
++|.+.|+...... +-|...||.|...++...+..+|+..|.++++- .|. +.....|.-+|...|.+++|...|
T Consensus 447 draiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 99999999998875 678899999999999999999999999997643 555 334445566789999999999888
Q ss_pred HHHhh---C------CCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 362 NCMLG---I------GVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 362 ~~~~~---~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
-..+. . +..++..+|..|=.++...++.+.+.+..
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 76542 1 12234567777777777788877665554
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.5e-08 Score=55.40 Aligned_cols=32 Identities=38% Similarity=0.840 Sum_probs=20.5
Q ss_pred CCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010853 156 GLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 187 (499)
Q Consensus 156 g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (499)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=6.7e-05 Score=72.56 Aligned_cols=411 Identities=10% Similarity=0.022 Sum_probs=225.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.-..+...|+..|-+..+.++. =...|..|...|...-+..+|...|++.++--+ -+........+.|++..+
T Consensus 469 ~~rK~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae~~~ 541 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAEEST 541 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhcccc
Confidence 4455577888888887776532 245788999999888899999998888875322 145566778899999999
Q ss_pred HhHHHHHHHhccCCCCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSV-NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
++.|..+.-...+..+. .-...|....-.|...++...|..-|+...+..++ |...|..+..+|.++|++..|.++|.
T Consensus 542 we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 542 WEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhh
Confidence 99998884443332210 11122333444567788999999999998887655 77889999999999999999999998
Q ss_pred HHHhCCCCCCcccHHHH--HHHHhcCCCHHHHHHHHHHHHhC------CCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 186 EGIQFGYLPSEHTYKVL--VEGLCGESDLEKARKVLQFMLSK------KDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 186 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
+... +.|+. +|... ...-+..|.+.++...+..+... +...-..++-.+...+...|-..++.++++.-
T Consensus 621 kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 621 KASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 8766 34543 23222 22346788999999888877532 11111223333333333333333333333322
Q ss_pred -------HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH---H---HHHHH
Q 010853 258 -------LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI---Q---EALNL 324 (499)
Q Consensus 258 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~ 324 (499)
.......+...|..+-++ ..+|-.... . .|+......+..-.-..+.. + -+.+.
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~asda----------c~~f~q~e~-~--~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c 764 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVASDA----------CYIFSQEEP-S--IVNMHYLIILSKQLEKTGALKKNDLLFLGYEC 764 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhHH----------HHHHHHhcc-c--chHHHHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 222212233333332222 222222220 0 22222222222211111111 1 11111
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHh----c----CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFR----L----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
+-. ......+..+|..+...|.+ . .+...|...+....+.. .-+..+|+.|. .....|++.-+...|
T Consensus 765 ~~~---hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCf 839 (1238)
T KOG1127|consen 765 GIA---HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCF 839 (1238)
T ss_pred hhH---HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhh
Confidence 111 11111123333333333322 1 12345666666665542 23444555444 335567777777666
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 397 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
-......+. ...+|..+...+....+++.|...|.......+. |...|-.........|+.-+...+|..
T Consensus 840 Iks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 840 IKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 655544332 5556777777777777888887777777665322 444444433334445655555555554
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.72 E-value=6.3e-06 Score=67.39 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGK--IHEAV 428 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~a~ 428 (499)
++.+++...++...+.. +.+...|..+...|...|+++.|...+++.....+. +...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444443 445555555555555555555555555555544332 444444444442 34444 35555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+++++..+.+.. +...+..+...+...|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555432 444555555555555555555555555554
No 115
>PLN02789 farnesyltranstransferase
Probab=98.70 E-value=3e-05 Score=68.25 Aligned_cols=128 Identities=12% Similarity=0.065 Sum_probs=57.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010853 164 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGES-DLEKARKVLQFMLSKKDVDRTRICNIYLRAL 241 (499)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (499)
+..+-..+...+..++|+.++.++++.. |+ ..+|+..-.++...| ++++++..++++.+. .+.+..+|+.....+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-npknyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-CCcchHHhHHHHHHH
Confidence 3334444445556666666666665532 32 233333333344444 355566666555532 222333344333333
Q ss_pred hccCCh--HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 242 CLIKNP--TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 242 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+.++. +++..+++.+.+...+ +..+|+...-++...|+++++++.++++.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333331 3344444444443322 4444444444444444444444444444443
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=5.1e-05 Score=62.06 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
+.+..+++.|...++.|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444445555555555442 133444444444332 22344445555554321 23344444444445555555
Q ss_pred HHHHHHHHHHHHHc
Q 010853 424 IHEAVHFLYELVDS 437 (499)
Q Consensus 424 ~~~a~~~~~~~~~~ 437 (499)
+++|..+++...+.
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555444
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=4.4e-06 Score=71.37 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=123.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch-hhH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTY 341 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 341 (499)
.....+..+...+...|+++.|...|+++.......|. ...+..+..++...|++++|...+.+..+...-.|.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777778888899999999999988775411111 2456777888888999999999998876554322221 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHH
Q 010853 342 NAVLRGLFRL--------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 413 (499)
Q Consensus 342 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 413 (499)
..+..++... |+++.|.+.++.+.+.. +-+...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 3444444443 66778888888887653 222222222211110 000 00 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVT-P-NIVCYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
+...|.+.|++++|...+++..+.... | ....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 567788999999999999999876321 2 3467889999999999999999999888653
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.68 E-value=8.4e-06 Score=66.49 Aligned_cols=159 Identities=15% Similarity=0.068 Sum_probs=105.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh
Q 010853 306 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE 385 (499)
Q Consensus 306 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (499)
..+-..+...|+-+....+..+..... +.|.......+....+.|++..|...+.+..... ++|..+|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHH
Confidence 455556666666666666655533222 3344444556667777777777777777777664 6677777777777777
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 465 (499)
.|+++.|..-|.+..+.... +...++.+...+.-.|+.+.|..++......+.. |...-..+.......|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777777655433 4445667777777777777777777777665432 555666666677777777777776
Q ss_pred HHHH
Q 010853 466 LREM 469 (499)
Q Consensus 466 ~~~m 469 (499)
...-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5543
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=1.1e-05 Score=79.41 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 206 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (499)
.++..+..+|-+.|+.++|..+++++.+..+. |+.+.|.+...|... ++++|.+++.+.+.. +
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 45555666677777777777777777766533 566667777777666 777777766665442 4
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
...+++..+.+++.++... .+. +.+.-.++.+.+... +..--..++-.+-..|-..++++++
T Consensus 180 i~~kq~~~~~e~W~k~~~~-~~~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHY-NSD----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HhhhcchHHHHHHHHHHhc-Ccc----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 4455666666666665532 111 222222233333322 2222344455556667777778888
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
..+|+.+.+.. +.|.....-++.+|.
T Consensus 243 i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 88888887765 456666666666654
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.63 E-value=3.4e-06 Score=72.08 Aligned_cols=187 Identities=9% Similarity=-0.064 Sum_probs=94.3
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCch--hh
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE--FA 128 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 128 (499)
+..+..++..+...|++++|...+.+++...+.. .....++..+..++.+.|++++|...++.+.+..+.... .+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFS---PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445555566666666666666555554433211 111234455556666666666666666666544331111 12
Q ss_pred HHHHHHHHHhc--------CChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccH
Q 010853 129 CGHMIDSLCRS--------GRNHGASRVVYVMRKRGLTPSLV-SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY 199 (499)
Q Consensus 129 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 199 (499)
+..+..++... |++++|.+.|+.+.+. .|+.. .+..+..... . ..... ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~--------~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH--------HHH
Confidence 33333333332 5566677777776665 23321 2211111100 0 00000 001
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCC--CCchhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 200 KVLVEGLCGESDLEKARKVLQFMLSKKD--VDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
..+...+.+.|+++.|...++....... +.....+..+..++...|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1344556677777777777777664321 223456667777777777777777777666554
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.3e-05 Score=65.43 Aligned_cols=159 Identities=15% Similarity=0.142 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..+-..+...|+-+....+........ +.|.......+....+.|++..|...+.+.... -++|...|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHH
Confidence 445555666677666666666654432 345555556777777788888888877775433 3677777887777788
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+.|+++.|..-|.+..+.- +-+...++.+.-.+.-.|+.+.|..++......+.. |..+-..+..+....|++++|..
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888887777753 335566677777777778888888888777654433 56666777777777888888777
Q ss_pred HHHHH
Q 010853 430 FLYEL 434 (499)
Q Consensus 430 ~~~~~ 434 (499)
+..+-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 65543
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=1.5e-05 Score=65.26 Aligned_cols=149 Identities=8% Similarity=0.081 Sum_probs=103.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 352 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 352 (499)
+..|...|+++.+....+.+.. |. ..+...++.+++...+.+.+... +.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCC
Confidence 3456777777766544433221 11 01122455666766676666554 556777888888888888
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH-HhcCC--hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGL-CESNQ--LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+++.|...|+...+.. +.+...+..+..++ ...|+ .++|.+++++..+.++. +..++..+...+...|++++|+.
T Consensus 88 ~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888765 45677777777764 56666 48888888888877655 66778888888888888888888
Q ss_pred HHHHHHHcC
Q 010853 430 FLYELVDSG 438 (499)
Q Consensus 430 ~~~~~~~~~ 438 (499)
.|+++.+..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 888888764
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=1.2e-05 Score=78.24 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=58.7
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
+..+..|..+..+.|.+++|..++..+++.-|. +......++..+.+.+++++|+..+++.....+ .+.....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd------~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~ 158 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD------SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREIL 158 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHH
Confidence 444444444444555555554444444432221 222333344444455555555555555444443 2333344
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
.+..++.+.|++++|..+|+++...+. -+..++..+..++.+.|+.++|...|+...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444445555555555555444211 1234444444444445555555555544443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3.2e-05 Score=63.19 Aligned_cols=237 Identities=15% Similarity=0.123 Sum_probs=146.2
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHH
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (499)
-+.-.|++..++..-....... .+...-.-+-++|...|++.... .++.... .|.......+......-++.+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~--~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK--ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc--CChHHHHHHHHHHhhCcchhH
Confidence 3344455555554443333221 12222233445555555543322 2333222 344444444444444444444
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+-+.-+.+.+.......+......-...|++.+++++|++..+... +......=+..+.+..+++-|++.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443343434333333333333334456889999999999887621 3333444455677888999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRS----GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLN 475 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (499)
.+.. +..+.+.|..+|.+. +.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++..... .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 7532 556777777777653 5788999999999875 47889999999999999999999999999998754 3
Q ss_pred CCHhHHHHHHHHhcccCCC
Q 010853 476 PDAVTWRILDKLHGNRGND 494 (499)
Q Consensus 476 p~~~~~~~l~~~~~~~g~~ 494 (499)
-++.+..-++.+--..|++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKD 257 (299)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 3567777676666666654
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=4.2e-05 Score=74.55 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 010853 281 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 360 (499)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 360 (499)
...+++.-+....... +.+...+..|.....+.|.+++|..++....+.. +.+......+...+.+.+++++|...
T Consensus 67 ~~~~~~~~~~~~~~~~--~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 67 KPAAALPELLDYVRRY--PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred chHhhHHHHHHHHHhc--cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 3334443333333333 4568888888888889999999999888866443 33455666777888889999999999
Q ss_pred HHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010853 361 FNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 440 (499)
++...... +-+......+..++...|++++|..+|+++...++ -+..++..+..++...|+.++|...|++..+.. .
T Consensus 143 ~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~ 219 (694)
T PRK15179 143 IELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-G 219 (694)
T ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-C
Confidence 99988875 55667777888888899999999999999887433 256788888888899999999999999888753 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCHhHHHHHHHHhcccC
Q 010853 441 PNIVCYNVVIDGACKLSMKREAYQILREMRK----NGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~l~~~~~~~g 492 (499)
|....|+.++ ++...-..+++++.- .|...........+.-+++..
T Consensus 220 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 220 DGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred cchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 3445555443 233334555555532 233333445555555555543
No 126
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.00018 Score=64.89 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+.+.|++..|+..+.+++... +-|...|....-+|.+.|.+..|++=.+...+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 456778899999999999999987 33788999999999999999999988777766
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.54 E-value=8e-05 Score=73.50 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=30.5
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 198 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
.+..+..+|-+.|+.+++..+++++++.. +.++.+.+.+...|+.. +.++|.+++.+.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 44555555555555555555555555433 44444555555555555 555555554433
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=4.5e-06 Score=64.48 Aligned_cols=94 Identities=7% Similarity=-0.154 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
+..+..++...|++++|...|+.+....+. +...|..+..++...|++++|...|++....+. .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence 334455556666666666666666554433 555666666666666666666666666666542 255566666666666
Q ss_pred cCChHHHHHHHHHHHH
Q 010853 456 LSMKREAYQILREMRK 471 (499)
Q Consensus 456 ~g~~~~a~~~~~~m~~ 471 (499)
.|++++|...|+...+
T Consensus 105 ~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 105 MGEPGLAREAFQTAIK 120 (144)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666665
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=7e-06 Score=63.12 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=63.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 452 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (499)
......+...+...|++++|.+.++.+...++. +...|..+..++...|++++|...+++..+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344445555666666666666666666554332 55566666666666667777776666666554 2245555556666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
+...|++++|...|++..+ +.|+...+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 6667777777777766665 345544433
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=1.7e-05 Score=61.31 Aligned_cols=106 Identities=8% Similarity=-0.100 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+......+...|++++|...|+...... +.+...+..+..++...|++++|...|+.+...++. +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4456677888999999999999998875 567888889999999999999999999999876543 77788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 421 SGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
.|++++|+..|++..+.... +...+...
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~-~~~~~~~~ 132 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYA-DASWSEIR 132 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 99999999999999886422 33444333
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.00054 Score=61.36 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=83.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCH
Q 010853 276 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRV 354 (499)
Q Consensus 276 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~ 354 (499)
+...|+++.|+..++.+.... +-|...+......+.+.++..+|.+.+++++... |+ ....-.+..++.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHhcCCh
Confidence 345566777777777666543 4455555566666667777777777666655332 33 33444455666666777
Q ss_pred HHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 355 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
.+|+.+++...... +.|+..|..|.++|...|+..++..-.. ..|...|+++.|+..+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 77777766666553 5566667777777776666555543332 2344556666666666666
Q ss_pred HHc
Q 010853 435 VDS 437 (499)
Q Consensus 435 ~~~ 437 (499)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 554
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00045 Score=56.30 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHHhc---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHH
Q 010853 245 KNPTELLNVLVFMLQT---Q-CQPDVI-TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ 319 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (499)
.++++..+++.++... | ..++.. .|..++-+....|+.+.|...++.+..+- +.+...-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3445555555554431 2 333333 23445555566777777777777776653 222222222222344567777
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+|+++++..+... +.|..++-.=+...-..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888887766554 445555655555555566666777666666654 3567778888888888888888888888887
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCC
Q 010853 400 VWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGV 439 (499)
Q Consensus 400 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~ 439 (499)
.-..+. +...+..+...+.-.| +.+-+.++|.+.++...
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 654332 4444555655554444 45567777777776543
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.0028 Score=61.23 Aligned_cols=224 Identities=15% Similarity=0.131 Sum_probs=145.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH--HHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR--GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 104 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (499)
...+++..|++....+.+.. ||. .|..++. .+.+.|+.++|..+++... .. ...|..|...+-..|...
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~----~~--~~~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALY----GL--KGTDDLTLQFLQNVYRDL 90 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhc----cC--CCCchHHHHHHHHHHHHH
Confidence 56788999999999988863 554 3444444 4467899999986554332 11 122788899999999999
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccC-C------
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP-SLVSYNSIVHGLCKHG-G------ 176 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~-~------ 176 (499)
++.++|..++++..... |+......+..+|.+.+.+.+-.+.--++-+. .| +...+=++++...... .
T Consensus 91 ~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred hhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCccccc
Confidence 99999999999998776 45667777888899988887655544444443 22 3444444444443311 1
Q ss_pred ---hhHHHHHHHHHHhCC-CCCCcccHHHHHHHHhcCCCHHHHHHHHHH-HHhCCCCCchhhHHHHHHHHhccCChHHHH
Q 010853 177 ---CMRAYQLLEEGIQFG-YLPSEHTYKVLVEGLCGESDLEKARKVLQF-MLSKKDVDRTRICNIYLRALCLIKNPTELL 251 (499)
Q Consensus 177 ---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (499)
..-|....+.+.+.+ ..-+..-.......+...|++++|..++.. ..+.-...+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 122445555555543 111222222333445567889999999843 333334444455567778888889999999
Q ss_pred HHHHHHHhcCCC
Q 010853 252 NVLVFMLQTQCQ 263 (499)
Q Consensus 252 ~~~~~~~~~~~~ 263 (499)
++-.++...+..
T Consensus 247 ~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 247 ELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHhCCc
Confidence 999888888753
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.00035 Score=56.90 Aligned_cols=188 Identities=15% Similarity=0.123 Sum_probs=114.2
Q ss_pred cCChhHHHHHHHHHHh---CC-CCCCcc-cHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChH
Q 010853 174 HGGCMRAYQLLEEGIQ---FG-YLPSEH-TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 248 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (499)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|..+++++..+ .+.+..+-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 3456677777766653 23 344443 3556666777788888888888888743 3444444444444555567777
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 328 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 328 (499)
+|+++++.+++.. +.|..++..-+...-..|+--+|++-+.+..+.- ..|...|..+...|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7777777777665 3355556555555555666666666666666543 567777777777777777777777777776
Q ss_pred hccCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHhhC
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGI 367 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 367 (499)
+-.. |.++..+..+...+...| +.+.+.+.|....+.
T Consensus 181 ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 5433 223333333443333322 455566666666654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=3.2e-05 Score=59.45 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
.....+...+...|++++|...++.+...+ +.+...+..+..++...|+++.|...++.....++. +...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 345556666777888888888888887765 456777777888888888888888888887765433 556677777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
...|++++|...|++..+. .|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 8888888888888888775 34444433
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.4e-06 Score=48.56 Aligned_cols=33 Identities=42% Similarity=0.837 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777766
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=0.00056 Score=61.29 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=84.9
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC-HHhHHHHHHHHHhcCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD-STTYAIVIDGLCESNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 390 (499)
+...|++++|+..+...+... +.|+.........+...++.++|.+.++.+... .|+ ....-.+..++.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 345566677777776654332 334444445556666777777777777777665 333 444555666777777777
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|..+++......+. |+..|..|.++|...|+..++..-.. ..+...|+++.|+..+....
T Consensus 392 eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHH
Confidence 777777766654433 66667777777777777666544332 23455677777777777665
Q ss_pred HC
Q 010853 471 KN 472 (499)
Q Consensus 471 ~~ 472 (499)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 53
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.27 E-value=1.9e-06 Score=47.63 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
.+|+.++.+|.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666666655
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=6.4e-05 Score=67.62 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
..++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 344555555666777777777776653 33 3334566666666666777777666644332 555555566666777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
++++.|+++.+++....+ -+..+|..|..+|...|+++.|+..++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777766521 134577777777777777777776666553
No 140
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.22 E-value=2.7e-06 Score=47.35 Aligned_cols=34 Identities=32% Similarity=0.954 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888899889999999999888888888873
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=0.0001 Score=57.23 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC---HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH--HHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAM 414 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l 414 (499)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+.+......++. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3667777777777776653 222 122333446666777777777777777765433221 234445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
...+...|++++|+..++..... ......+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66777777777777777654322 223345556666777777777777777653
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.18 E-value=0.005 Score=56.08 Aligned_cols=432 Identities=9% Similarity=0.045 Sum_probs=241.8
Q ss_pred CCC-ChhhHHHHH--HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCH
Q 010853 15 PFP-PVASLTSAL--AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 91 (499)
Q Consensus 15 ~~~-~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (499)
.+| ++.+|..++ ..+...++++..++++... .+-.+..|..-+..-.+.++++..+.+|.+.+...- +.
T Consensus 15 ~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-------nl 86 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-------NL 86 (656)
T ss_pred cCCccHHHHHHHHHHHccCCHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-------hH
Confidence 344 678888888 6777999999999999885 344678899999999999999999988877765422 23
Q ss_pred HhHHHHHHHHHc-CCCHh----HHHHHHHhcc-CCCCC-CchhhHHHHHHH---------HHhcCChhhHHHHHHHHHhc
Q 010853 92 AAFANLVDSLCR-EGYVN----EVFRIAEDMP-QGKSV-NEEFACGHMIDS---------LCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 92 ~~~~~l~~~~~~-~~~~~----~a~~~~~~~~-~~~~~-~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~ 155 (499)
..|..-+.--.+ .|+.. ...+.|+-.. +.|.. .+-..|+..+.. +..+.+++...++++++...
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 344433332221 22222 2223333322 22321 122345544443 23344566677788877764
Q ss_pred CCCCChh-------hHHHHHHHH-------HccCChhHHHHHHHHHHh--CCCCCCccc---------------HHHHHH
Q 010853 156 GLTPSLV-------SYNSIVHGL-------CKHGGCMRAYQLLEEGIQ--FGYLPSEHT---------------YKVLVE 204 (499)
Q Consensus 156 g~~p~~~-------~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~ 204 (499)
-+. |.. .|..=|... -+...+..|.++++++.. .|+.....+ |..+|.
T Consensus 167 Pm~-nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 167 PMH-NLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 222 211 222111111 123456667777777653 233222111 222221
Q ss_pred HHhcCC------C--HHHHHHHHHHHHhCCCCCchhhHHHHHH-------HHhccCC-------hHHHHHHHHHHHhcCC
Q 010853 205 GLCGES------D--LEKARKVLQFMLSKKDVDRTRICNIYLR-------ALCLIKN-------PTELLNVLVFMLQTQC 262 (499)
Q Consensus 205 ~~~~~~------~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~-------~~~a~~~~~~~~~~~~ 262 (499)
-=...+ . -....-++++.+. -..-.+.+|..... .+...|+ .+++..+++.....-.
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll-~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLL-YLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 111100 0 0011112222111 01111122222211 2222333 3445555554443322
Q ss_pred CCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh
Q 010853 263 QPDVITLNTVINGFCKM---GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 263 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
..+..+|..+...--.. ...+.....++++.......|+ .+|...++...+..-...|..+|.++-+......++.
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVf 403 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVF 403 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhh
Confidence 22333333333221111 1355666677776665443443 4677788888888889999999999654444444778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKG 417 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 417 (499)
.++++|..+| .++.+-|.++|+.-.+.- ..++.-....+.-+...++-..++.+|+++...+..+ ...+|..+|..
T Consensus 404 Va~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 404 VAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 8888888765 478899999999766542 3344555667778888999999999999998774444 34589999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCh
Q 010853 418 LCRSGKIHEAVHFLYELVDSG---VTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~ 459 (499)
-..-|+...+.++-+++...- ..+....-..+++-|.-.+..
T Consensus 482 ES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 999999999999888876531 122223333444445444443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.4e-06 Score=46.10 Aligned_cols=33 Identities=24% Similarity=0.567 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 441 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 441 (499)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00022 Score=55.36 Aligned_cols=118 Identities=15% Similarity=0.041 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHHhccCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH--HhHHHHHHHHHhcCChhh
Q 010853 315 VGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS--TTYAIVIDGLCESNQLDE 391 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 391 (499)
.++...+...+..+....+-.+ .....-.+...+...|++++|...|+........++. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5556666555655444331111 1122333445566677777777777777765422221 233445666677777777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
|...++..... ......+....+.|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777664322 223445566667777777777777777653
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=6.4e-05 Score=67.92 Aligned_cols=122 Identities=11% Similarity=0.090 Sum_probs=76.2
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
+.+......+++.+....+.+.+..++.+.+.. ....-..|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666666666677666666554 111223344566777777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
.|++.+.+.|++..|.+++..|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777766666665555555555555555443
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.013 Score=56.86 Aligned_cols=189 Identities=13% Similarity=0.042 Sum_probs=127.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.+.|+.++|..+++.....+. .|..++..+-..|.+.++.++|..+|+++... .|+......+..+|.+.++
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-------~P~eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-------YPSEELLYHLFMAYVREKS 125 (932)
T ss_pred HHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------CCcHHHHHHHHHHHHHHHH
Confidence 899999999999999887653 37888999999999999999999988877654 3455666678888888887
Q ss_pred HhH----HHHHHHhccCCCCCCchhhHHHHHHHHHhc-CC---------hhhHHHHHHHHHhcC-CCCChhhHHHHHHHH
Q 010853 107 VNE----VFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GR---------NHGASRVVYVMRKRG-LTPSLVSYNSIVHGL 171 (499)
Q Consensus 107 ~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~ 171 (499)
+.+ |.+++....++.. ..|+ +++...+. .. ..-|.+.++.+.+.+ .--+..-...-...+
T Consensus 126 yk~qQkaa~~LyK~~pk~~y----yfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL 200 (932)
T KOG2053|consen 126 YKKQQKAALQLYKNFPKRAY----YFWS-VISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLIL 200 (932)
T ss_pred HHHHHHHHHHHHHhCCcccc----hHHH-HHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHH
Confidence 764 5566665544322 3333 33433322 11 123566667766654 222233333445556
Q ss_pred HccCChhHHHHHHHHHH-hCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 010853 172 CKHGGCMRAYQLLEEGI-QFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (499)
...|.+++|+.++..-. +.-..-+...-+.-+..+...+++.+..++-.++..++..
T Consensus 201 ~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 201 ELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 67889999999995332 3222223344456677888889999999999888876544
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00018 Score=64.81 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
....++..+...++++.|..+|+++.+.. |+. ...++..+...++..+|.+++.+.+... +.+......-...
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34556666777788888888888888653 443 4456777777788888888888877543 3345555555666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+.+.++++.|+.+.+++.+.. +.+..+|..|..+|...|+++.|...++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 778888888998888888864 4456688888889999999999888887764
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.04 E-value=7.2e-05 Score=67.63 Aligned_cols=123 Identities=12% Similarity=0.196 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHH
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYA 377 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 377 (499)
+.+......+++.+....+.+++.+++.+...... ...-..|..++++.|...|..+.+..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 56788888899999999999999999988654422 22334566799999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
.|++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988777666666666555555554
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.013 Score=55.17 Aligned_cols=206 Identities=8% Similarity=0.045 Sum_probs=115.8
Q ss_pred CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH------HHHHHHcCCCHhHHHHHHHhccCCC
Q 010853 48 LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN------LVDSLCREGYVNEVFRIAEDMPQGK 121 (499)
Q Consensus 48 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~~~~ 121 (499)
.|.+..|..+.....+.-.++.|+..|.+ ...-.|+..-...-.. -...-+--|.+++|.+++-++-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVr----c~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVR----CGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhh----hccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 48888898888777666666666654332 2211122110000000 0111122378888888887776654
Q ss_pred CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc
Q 010853 122 SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 197 (499)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 197 (499)
. .|..+.+.|++-...++++. -|-..| ...|+.+...+.....|++|.+.|..-..
T Consensus 765 L---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------- 824 (1189)
T KOG2041|consen 765 L---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------- 824 (1189)
T ss_pred h---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------
Confidence 3 45667777777766665542 111111 23677777777777778888777765321
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 010853 198 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 277 (499)
Q Consensus 198 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 277 (499)
....+.++.+..++++.+.+...+ +.+....-.+..++...|.-++|.+.+-+.. . | ...+..|.
T Consensus 825 -~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 825 -TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCV 889 (1189)
T ss_pred -hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHH
Confidence 124556666666666655554433 3344556666777777777777766553321 1 1 13355666
Q ss_pred hcCCHHHHHHHHHHH
Q 010853 278 KMGRIEEALKVLNDM 292 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~ 292 (499)
..+++.+|.++-+..
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 667777777665543
No 150
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.02 E-value=0.00037 Score=58.38 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=60.3
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
..+.+++.+|...|.+++...+. |...|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 34456666666666666655433 4555555666666666666666666665554321 334666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 463 YQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 463 ~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
++.|++.++ +.|+..+|..=++..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 666666665 566666665544443
No 151
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.02 E-value=5e-05 Score=53.31 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHccC--------ChhHHHHHHHHHHhCCCCCCcccHHH
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGL-TPSLVSYNSIVHGLCKHG--------GCMRAYQLLEEGIQFGYLPSEHTYKV 201 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (499)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777777 677777777776665532 23346667777777777777777777
Q ss_pred HHHHHh
Q 010853 202 LVEGLC 207 (499)
Q Consensus 202 l~~~~~ 207 (499)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 776554
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.97 E-value=0.00013 Score=51.32 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHhHHHH
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGV-TPNIVCYNVVIDGACKLS--------MKREAYQILREMRKNGLNPDAVTWRI 483 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 483 (499)
..|..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555777777777777777777 677777777777665432 23446677777777778888888887
Q ss_pred HHHHhcc
Q 010853 484 LDKLHGN 490 (499)
Q Consensus 484 l~~~~~~ 490 (499)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766543
No 153
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.3e-05 Score=43.03 Aligned_cols=29 Identities=41% Similarity=0.781 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00018 Score=62.65 Aligned_cols=130 Identities=10% Similarity=0.150 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
+|..++...-+.+..+.|..+|.++.+......+.....+.+. +...++.+.|..+|+...+. .+.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3445555555555555555555554433222222222222222 22234444455555555543 233444555555555
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
...++.+.|+.+|++.... ..++. ..|..++..=.+.|+.+.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555433 11111 2455555555555555555555555544
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.94 E-value=0.0022 Score=56.19 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=26.5
Q ss_pred HHHHcc-CChhHHHHHHHHHHhC----CCC-CCcccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 169 HGLCKH-GGCMRAYQLLEEGIQF----GYL-PSEHTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 169 ~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
..|... |+++.|.+.|++..+. +.. .-..++..+...+.+.|++++|.++|+++..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334444 5666666666554431 100 0113344455556666666666666666554
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.93 E-value=0.00037 Score=63.05 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
...+...|+++.|+..|+++++.. +.+...|..+..+|...|++++|...+++++..... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 345567788888888888888765 456677777778888888888888888888765543 556777778888888888
Q ss_pred HHHHHHHHHHHHcC
Q 010853 425 HEAVHFLYELVDSG 438 (499)
Q Consensus 425 ~~a~~~~~~~~~~~ 438 (499)
++|...|++....+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887753
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.89 E-value=0.00062 Score=51.90 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
.+...+...|++++|.++|+-+...++. +..-|-.|..++-..|++++|+..|......++ -|+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 3444455566666666666666544433 444555566666666666666666666666553 25555666666666666
Q ss_pred ChHHHHHHHHHHHH
Q 010853 458 MKREAYQILREMRK 471 (499)
Q Consensus 458 ~~~~a~~~~~~m~~ 471 (499)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.89 E-value=0.00067 Score=50.63 Aligned_cols=98 Identities=11% Similarity=-0.012 Sum_probs=54.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVI 450 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 450 (499)
++..+...+.+.|++++|...++.+...... .....+..+..++.+.|++++|...|+++....... ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3444555556666666666666666543221 112344456666666666666666666666542221 133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 010853 451 DGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
.++.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666653
No 159
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.88 E-value=0.00021 Score=57.10 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=38.0
Q ss_pred CcCHHhHHHHHHHHHh-----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 370 VADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
..+..+|..+++.|.+ .|..+-....+..|.+-|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4577788888877764 46677777777778788888888888888887754
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00037 Score=49.46 Aligned_cols=93 Identities=15% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
..+...+...|++++|...++.+.+.... +...+..+...+...|++++|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 33444555556666666666665543322 2344555555666666666666666666554322 334555555666666
Q ss_pred CChHHHHHHHHHHHH
Q 010853 457 SMKREAYQILREMRK 471 (499)
Q Consensus 457 g~~~~a~~~~~~m~~ 471 (499)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666665543
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=3.2e-05 Score=53.42 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=41.9
Q ss_pred cCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
.|+++.|..+++++.+..+. ++...+..+..+|.+.|++++|..++++ .+.+.. +......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666544332 1333444456666666666666666655 222111 22333344556666666666666
Q ss_pred HHHH
Q 010853 465 ILRE 468 (499)
Q Consensus 465 ~~~~ 468 (499)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.0051 Score=54.07 Aligned_cols=273 Identities=14% Similarity=0.064 Sum_probs=137.5
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLE 213 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 213 (499)
.+.+..++..|+..+....+..+. +..-|..-...+...|+++++..-.+.-++. +|. .......-.++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 345566677777777777776543 3444555555555666666666555443331 221 123333344444444555
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHhhHHHH-HHHHHhcCCHHHHHHHHHH
Q 010853 214 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTV-INGFCKMGRIEEALKVLND 291 (499)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 291 (499)
+|.+.++.-. .+ ....++..++....... +|...++..+ ..++...|+.++|.++-..
T Consensus 135 ~A~~~~~~~~---------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSKQ---------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhhh---------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 5554444110 00 01111111111111111 1223333322 2344556667776666666
Q ss_pred HhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH---HH----------HHHHHhcCCHHHHH
Q 010853 292 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN---AV----------LRGLFRLRRVEEAK 358 (499)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l----------l~~~~~~~~~~~a~ 358 (499)
+.+.. ..+....-.--.++-..++.+.+...|.+.+. ..|+...-. .. .+-..+.|.+..|.
T Consensus 195 ilkld--~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLD--ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcc--cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 65543 22222222222233445666667666665442 233322211 11 11234677888888
Q ss_pred HHHHHHhhC---CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 010853 359 EVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYV--YAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 359 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
+.|.+.+.. ++.++...|.....+..+.|+.++|..-.++....+ +..+ |..-..++...+++++|.+-+++
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887754 334556667667777778888888888777775422 1122 22223345556778888888877
Q ss_pred HHHcC
Q 010853 434 LVDSG 438 (499)
Q Consensus 434 ~~~~~ 438 (499)
..+..
T Consensus 347 a~q~~ 351 (486)
T KOG0550|consen 347 AMQLE 351 (486)
T ss_pred HHhhc
Confidence 76543
No 163
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.85 E-value=0.00039 Score=49.37 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
..+...+...|++++|..+++...+.. +.+...+..+..++...++++.|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 344555566677777777777766543 333455666666667777777777777776654332 334666666777777
Q ss_pred CCHHHHHHHHHHHHHc
Q 010853 422 GKIHEAVHFLYELVDS 437 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~ 437 (499)
|++++|...+.+..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 7777777777666543
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.83 E-value=0.0011 Score=53.18 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=53.2
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCc--hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNE--EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 167 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 167 (499)
....+..+...+...|++++|...|++..+....++ ...+..+..++.+.|++++|...+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 344566666667777777777777777654432221 345666777777777777777777777665322 34455555
Q ss_pred HHHHHccCCh
Q 010853 168 VHGLCKHGGC 177 (499)
Q Consensus 168 ~~~~~~~~~~ 177 (499)
..++...|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 5566555553
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.83 E-value=0.00061 Score=50.85 Aligned_cols=99 Identities=15% Similarity=0.033 Sum_probs=42.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCC--chhhHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVN--EEFACGH 131 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 131 (499)
+..++..+.+.|++++|...+.+++...+. .......+..+..++.+.|++++|...|+.+....+.. ...++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPK---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 444444455555555555544444332211 11112233334444555555555555555444332111 1223334
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
+..++.+.|+.++|...++.+.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHH
Confidence 444444555555555555555444
No 166
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=3e-05 Score=41.56 Aligned_cols=30 Identities=30% Similarity=0.761 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888877653
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.81 E-value=0.0016 Score=52.28 Aligned_cols=83 Identities=11% Similarity=-0.029 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++.....+. +...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44444445555555555555555554321111 234444555555555555555555555443222 233344444444
Q ss_pred HhcCCH
Q 010853 419 CRSGKI 424 (499)
Q Consensus 419 ~~~g~~ 424 (499)
...|+.
T Consensus 117 ~~~g~~ 122 (172)
T PRK02603 117 HKRGEK 122 (172)
T ss_pred HHcCCh
Confidence 444443
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.78 E-value=0.0014 Score=57.10 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
.+|..+++..-+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|..+|+..++.. +.+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4677888888888889999999999886553 233444444444 333566666899998887654 45566677778
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
..+...++.+.|..+|+..... +.++. ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888889999999999988876 33332 47888888888888988888888888653
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.0011 Score=52.97 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
..+...+...|++++|...|+........+ ...++..+..++...|++++|...++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333444444444444444443321111 11233444444444444444444444443
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.0013 Score=59.58 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=72.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
....+...|++++|++.|.+++... +.+...|..+..++...|++++|+..++.+.+.. +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 3456677888888888888877554 3455667777778888888888888888888765 446777888888888888
Q ss_pred ChhhHHHHHHHHhcCCC
Q 010853 388 QLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~ 404 (499)
+++.|...|++.....+
T Consensus 85 ~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 85 EYQTAKAALEKGASLAP 101 (356)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 88888888888876543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0026 Score=60.31 Aligned_cols=143 Identities=15% Similarity=0.018 Sum_probs=85.9
Q ss_pred CCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc--------CChhhHHHHHHHHhc
Q 010853 335 SPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVW 401 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 401 (499)
+.+...|...+++.... ++...|..+|++..+.. +-....+..+..++... .+...+.+..+....
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45566666666664332 23567777777777753 22334444433333221 112333333333322
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhH
Q 010853 402 P-SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVT 480 (499)
Q Consensus 402 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 480 (499)
. ....+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.+++... +.|...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCch
Confidence 2 123344567767666667788888888888888764 5677788888888888888888888888766 4565555
Q ss_pred HH
Q 010853 481 WR 482 (499)
Q Consensus 481 ~~ 482 (499)
|-
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 43
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0076 Score=52.85 Aligned_cols=135 Identities=12% Similarity=0.047 Sum_probs=64.3
Q ss_pred HHHhc-CCHHHHHHHHHHHhhC----CCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-----CCHH-HHHH
Q 010853 347 GLFRL-RRVEEAKEVFNCMLGI----GVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-----HDNY-VYAA 413 (499)
Q Consensus 347 ~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~-~~~~ 413 (499)
.|... |+++.|.+.|++..+. + .+ -..++..+...+.+.|++++|.++|+++...... .+.. .|-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 5666666666655432 2 11 1234455666677777777777777776543221 1111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSG--VTP--NIVCYNVVIDGACK--LSMKREAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
.+-++...|++..|.+.+++..... +.. .......|+.+|-. ...++.++.-|+.+. +.|..--..|++
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~----~ld~w~~~~l~~ 276 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS----RLDNWKTKMLLK 276 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-------HHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC----ccHHHHHHHHHH
Confidence 3345556677777777777766542 111 12345555655543 223444444444442 345444444443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.69 E-value=0.0013 Score=52.53 Aligned_cols=115 Identities=9% Similarity=-0.012 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHh-hCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 354 VEEAKEVFNCML-GIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 354 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
+..+...+..+. ..+..-....+..+...+...|++++|...+++.......+ ...+|..+...+...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444455553 33322234566777888888999999999999997654332 235788899999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-------hcCChHHHHHHHHHH
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGAC-------KLSMKREAYQILREM 469 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~m 469 (499)
+++....... ...++..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9999876322 3455666666666 788888666666554
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=0.00011 Score=50.81 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+.. +....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4444555555554443210 1222333344455555555555555544 111111 112222334445555555555554
Q ss_pred HH
Q 010853 431 LY 432 (499)
Q Consensus 431 ~~ 432 (499)
|+
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.66 E-value=0.0014 Score=49.94 Aligned_cols=93 Identities=10% Similarity=-0.042 Sum_probs=71.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.+..-+...|++++|..+|+.+.... +-+..-|..|.-++...|++++|...|......++. |+..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcC
Confidence 34444667888888888888887765 446666777888888888888888888888776653 6667777888888888
Q ss_pred CHHHHHHHHHHHHHc
Q 010853 423 KIHEAVHFLYELVDS 437 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~ 437 (499)
+.+.|.+.|+..+..
T Consensus 118 ~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 118 NVCYAIKALKAVVRI 132 (157)
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888877654
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0049 Score=52.17 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=81.4
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCChhhH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
+-|...|..|..+|...|+.+.|..-|....+.... +...+..+..++.... ...++.++|+++...+.. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 567888888888888888888888888888765433 5566666666655442 356788888888877533 66777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 447 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
..|...+...|++.+|...|+.|.+. -|....+..++
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHH
Confidence 77777888888888888888888874 34445555555
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.60 E-value=0.00024 Score=46.66 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
...|++++|+++|+++.+..+. +...+..+..+|.+.|++++|.++++++.. ..|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHH
Confidence 3567777777777777766433 556666677777777777777777777766 34554444444
No 178
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.59 E-value=0.05 Score=48.85 Aligned_cols=433 Identities=12% Similarity=0.097 Sum_probs=227.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhh------HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLT------YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
+.+++++.+|.++|.++...- ..++.. -+.++++|...+ ..++...+....+..+. ..|-.+..
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~n-----ld~Me~~l~~l~~~~~~----s~~l~LF~ 85 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLNN-----LDLMEKQLMELRQQFGK----SAYLPLFK 85 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHhh-----HHHHHHHHHHHHHhcCC----chHHHHHH
Confidence 378899999999999987642 223222 334566664432 23333333333332222 23333443
Q ss_pred H--HHcCCCHhHHHHHHHhccCC--CCC------------CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC----CC
Q 010853 100 S--LCREGYVNEVFRIAEDMPQG--KSV------------NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL----TP 159 (499)
Q Consensus 100 ~--~~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~----~p 159 (499)
+ +-+.+.+++|.+.+...... +.. +|...-+..++++...|++.++..+++++...=. .-
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 3 34778999999888776544 221 1223335567888999999999999988876532 35
Q ss_pred ChhhHHHHHHHHHcc--------CC-------hhHHHHHHHHHHhC------CCCCCcccHHHHHHHHhcC--CCHHHHH
Q 010853 160 SLVSYNSIVHGLCKH--------GG-------CMRAYQLLEEGIQF------GYLPSEHTYKVLVEGLCGE--SDLEKAR 216 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~ 216 (499)
+..+|+.++-.++++ .. ++.+.-...+|... .+.|.......++....-. ....--.
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 788888765555442 11 12222222333221 1233333333333332221 1222233
Q ss_pred HHHHHHHhCCCCCchh-hHHHHHHHHhccCChHHHHHHHHHHHhcCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 217 KVLQFMLSKKDVDRTR-ICNIYLRALCLIKNPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLND 291 (499)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 291 (499)
++++.....-+.|+.. +...+...+.. +.+++..+-+.+....+. .=..+|..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333334444433 33344444433 555555555444433221 1245677888888888888888888776
Q ss_pred HhhCCCCCCCHHHHHH-------HHHHHHc----cCCHHHHHHHHHHHhccCCCCCchh-hHHHHHH---HHHhcCC-HH
Q 010853 292 MVAGKFCAPDAVTFTT-------IIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIV-TYNAVLR---GLFRLRR-VE 355 (499)
Q Consensus 292 ~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~---~~~~~~~-~~ 355 (499)
+..- .|+...-.. +-+..+. ..+..+-+.++.. .+... .|.. ....++. -+-+.|. -+
T Consensus 324 L~~l---dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~-~qs~D--iDrqQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 324 LKIL---DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEE-IQSYD--IDRQQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHhc---CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHhhc--ccHHHHHHHHHHHHHHHHhcCCccH
Confidence 6543 233221111 1111110 1111222333322 22221 1211 1122222 2334454 78
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHH----HHHHh---cCChhhHHHHHHHHhcCCCCC----CHHHHHHHHHH--HHhcC
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVI----DGLCE---SNQLDEAKRFWDDIVWPSNIH----DNYVYAAMIKG--LCRSG 422 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~--~~~~g 422 (499)
+|..+++.+.+.. +-|...-+.+. .+|.. ...+.+-..+-+-+.+.|+.| +...-|.|.++ +...|
T Consensus 398 kalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 8899998887753 33444333322 23332 223333333434444556554 22344555443 45678
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.=
T Consensus 477 ey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 477 EYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred cHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 99988766655554 5789999999988888899999999998764 5666666543
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.53 E-value=0.025 Score=48.12 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=28.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCh-hhH---HHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNS-LTY---SVLVRGVLRTRDVERANVLMFKLWERMKE 83 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (499)
.+.|++++|.+.|+.+.... |+. ... -.++.++.+.+++++|...++++++..|.
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 55566666666666665542 221 111 22445555566666666655555555444
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.00046 Score=44.81 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+...|++++|.+.|+++++.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544311 344444455555555555555555555543
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.52 E-value=0.012 Score=50.08 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=29.7
Q ss_pred HHHHhccCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 238 LRALCLIKNPTELLNVLVFMLQT--QCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34445555555555555555543 122233445556666666666666666555443
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.52 E-value=0.0007 Score=54.20 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=50.6
Q ss_pred CHHhHHHHHHHHHc-----CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhH
Q 010853 90 NNAAFANLVDSLCR-----EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSY 164 (499)
Q Consensus 90 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~ 164 (499)
+..+|..+++.+.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- |. ..+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NFF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cHH
Confidence 44555555555543 25555555566666666666666666666655432 1110 00 000
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
.++..- --.+-+-|++++++|...|+.||..++..++..+.+.+
T Consensus 109 Q~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 109 QAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 000000 01123446666666666666666666666666665544
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0022 Score=53.96 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
-+.+.+++.+|+..|.+++.-. +-|.+.|..-..+|.+.|.++.|.+-.+..+... +-...+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4667888888888888877543 4456667777788888888888888888887754 334668888888888888888
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAA 413 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~ 413 (499)
+|.+.|++.++ +.|+..+|-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHH
Confidence 88888888865 4555555543
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.50 E-value=0.059 Score=51.06 Aligned_cols=92 Identities=11% Similarity=-0.039 Sum_probs=50.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCc---------
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR--------- 230 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 230 (499)
|....-.+...+...|.-++|.+.|-+... | ...+..|...++|.+|.++-+...-..+..-
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll 921 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL 921 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 555666777778888888888777654311 2 2345566666777777666554321110000
Q ss_pred -hhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 231 -TRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 231 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
..-..--+..+.+.|..-.|-+++.+|.+.
T Consensus 922 ~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 922 ADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred hhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 000112245566677776777777666543
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00065 Score=44.77 Aligned_cols=64 Identities=16% Similarity=0.142 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS-MKREAYQILREMRK 471 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 471 (499)
+..+|..+...+...|++++|+..|++.++.+.. +...|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456677777777777777777777777776433 5566777777777777 57777777777655
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.025 Score=44.08 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=46.7
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC---CCCHHHHH
Q 010853 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYA 412 (499)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~ 412 (499)
|++..-..+..+....|+..+|...|.+...--..-|....-.+.++....+++..|...++++.+..+ .|| ..-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 344334444445555555555555555544433333444444455555555555555555555443221 122 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+.+.+...|++.+|..-|+...+.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3444555555555555555555544
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.016 Score=55.22 Aligned_cols=66 Identities=14% Similarity=-0.016 Sum_probs=44.2
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.+...+..+.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++....+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344556655555555677777777777776554 456677777777777777777777777776653
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.43 E-value=0.0011 Score=43.09 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+...+...|++++|...|+.+++..+. +...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667778888888888887766533 6667777777888888888888888777765
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.43 E-value=0.011 Score=43.40 Aligned_cols=91 Identities=21% Similarity=0.215 Sum_probs=48.4
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCCHHHHHHHHHHHHcc
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNV 315 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 315 (499)
.++-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+|++....... .-+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554432 223445556666677777777777766654210 00122222233455566
Q ss_pred CCHHHHHHHHHHHh
Q 010853 316 GRIQEALNLLYQVM 329 (499)
Q Consensus 316 ~~~~~a~~~~~~~~ 329 (499)
|+.++|+..+-..+
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777766665543
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.016 Score=47.82 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH--
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI-- 380 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-- 380 (499)
.....++..+.-.+.+.-..+.+.+.++ ..-+.++.....+++.-.+.||.+.|...|+...+..-..|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3345566666667777777787777554 3334456677777777788888888888888776543344444444333
Q ss_pred ---HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 010853 381 ---DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 450 (499)
Q Consensus 381 ---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 450 (499)
..|.-.+++..|...+.++...+.. |....|.-.-+..-.|+..+|++.++.|+.. .|...+-++++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 3455567777888888777766544 4444454444555667888888888888876 34444444443
No 191
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.37 E-value=0.025 Score=43.90 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHhHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRI 483 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~ 483 (499)
+...++..+...|++++|.++.+.+....+ .+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+-..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 456667777788888888888888888753 377788888888888888888888888774 3688888766544
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.044 Score=42.80 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CcCHHhHH
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-VADSTTYA 377 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 377 (499)
.|+...--.+..++...|+..+|...|.+.+ ..-+..|......+.++....+++..|...++++.+... .-++.+.-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3444444455555555555555555555533 222334444455555555555555555555555544320 00112233
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhc
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
.+.+++...|.++.|+.-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344555555555555555555544
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.019 Score=48.76 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC---ChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
+-|...|..|..+|...|+++.|..-|....+.. +++...+..+..++.... ...++..+++++...+.. |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 4566777778888888888888888887777754 456666666666554432 345677788887766544 66666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.-|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 677777778888888888888887763
No 194
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.17 Score=49.21 Aligned_cols=179 Identities=9% Similarity=0.002 Sum_probs=103.0
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCGVLPN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
+..+-+..+.+...++-|+.+...-.. .++ .........-+.+.|++++|...|-+.+.. +.|.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~---d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------le~s----- 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL---DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------LEPS----- 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc------CChH-----
Confidence 445556666777777777766554322 122 122333445566788888887766444322 2222
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.++.-+.......+-...++.+.+.|. .+...-+.|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 266666666666666777777777776 344445668888888888777666655444 2211 112445666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
-.++|.-+-..... ....... .+-..+++++|.+.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 66666655443322 2222222 334567788888887655
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.0083 Score=44.11 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=54.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
...+-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++.+.....+.+ .. +......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~--~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-EL--NAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cc--cHHHHHHHHHH
Confidence 3444667888888888888877765443 2345556667777777777777776666554432 11 22222223345
Q ss_pred HHcCCCHhHHHHHHHhc
Q 010853 101 LCREGYVNEVFRIAEDM 117 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~ 117 (499)
+...|+.++|++.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 56666776666655443
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.30 E-value=0.00082 Score=44.11 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=24.7
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.|++++|.++++.+....+. +...+..+..+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555555555555443332 4444444555555555555555555555443
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.018 Score=47.53 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=12.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 010853 202 LVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+...|.+.|.+..|..-++.+++
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 44455666666666666666553
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.0034 Score=55.08 Aligned_cols=133 Identities=8% Similarity=-0.002 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHH----hhCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHh----cCCC-CCCH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCM----LGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIV----WPSN-IHDN 408 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~~~~ 408 (499)
..|..+...|.-.|+++.|+...+.- ++.|-. .....+..|.++++-.|+++.|.+.|+... +.+- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666666778999998776543 233322 123467788889999999999999887653 2222 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----c-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVD----S-GVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+.-+|...|.-..++++|+.++++-.. . +..-....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3556778888888889999988766432 1 1122456788899999999999999988877653
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.27 E-value=0.0015 Score=42.96 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=46.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHFLYELVDS 437 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~ 437 (499)
+..+|..+...+...|++++|...|++.++.++. +...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456677777777777777777777777765543 5567777777777777 677777777776654
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.13 Score=45.61 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
+.+..|.-+...|+...|.++-.+.. .|+..-|..-+.+++..+++++...+-.. +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33344444555566555555544442 34555566666666666666655554322 112234566666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 465 (499)
+.|+..+|..++.++ .+..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 666666666555441 123444455556666555544
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.22 E-value=0.099 Score=49.18 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=48.7
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV-------- 444 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------- 444 (499)
..+...+...+.+...+..|-++|.++-. ...++......+++++|..+-++..+. .||+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 33444444445555566666666666521 234555566666677766666554432 22221
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 445 ---CYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 445 ---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
-|.-.-++|.++|+-.+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 234445567777777777777777643
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.079 Score=49.79 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 148 VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 148 ~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
-+++++++|-.|+... +...++-.|.+.+|-++|.+
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 3455666666666543 23445556666666666654
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.18 E-value=0.1 Score=46.74 Aligned_cols=179 Identities=12% Similarity=0.013 Sum_probs=98.9
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCC---CCCchhhHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhH
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLCR---SGRNHGASRVVYVMRKRGLTPSLVSY 164 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~g~~p~~~~~ 164 (499)
..+...++-+|....+++..+++.+.+.... +......-....-++-+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 3344566677888999999999999987652 21222233344556666 78999999999886666667788888
Q ss_pred HHHHHHHHc---------cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHH
Q 010853 165 NSIVHGLCK---------HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICN 235 (499)
Q Consensus 165 ~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (499)
..+.+.|-. ....++|...|.+.-+. .|+...-..++..+...|.-.....-++++. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~-----------~ 287 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIG-----------V 287 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHH-----------H
Confidence 888877643 11345566666554332 2333322222222222222111110011110 0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 236 IYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+-....+.|.. ....+-..+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 288 ~l~~llg~kg~~-------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 288 KLSSLLGRKGSL-------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHhhccc-------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 000011111111 11234455677777888888888888888888765
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0056 Score=52.43 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=48.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
.+.|++++|+..|+.+.... |+. .++..+..++...|++++|...|..++...+.. ......+..++..+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s---~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS---PKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---cchhHHHHHHHHHHH
Confidence 34566666666666666542 332 355556666666666666666666655544432 112233333444555
Q ss_pred cCCCHhHHHHHHHhccCCC
Q 010853 103 REGYVNEVFRIAEDMPQGK 121 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~ 121 (499)
..|+.++|.+.|+.+.+..
T Consensus 229 ~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 5556666655555554433
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.023 Score=46.96 Aligned_cols=161 Identities=11% Similarity=0.002 Sum_probs=114.3
Q ss_pred HhcCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 27 AITGEM-DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 27 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
.+++.. +.-++++++=.. ...+.+++.+...|.+.-...++.+++++-+ ..++.....|++.-.+.|
T Consensus 159 ~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-----e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 159 LEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYP-----EQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-----cccHHHHHHHHHHHHhcc
Confidence 444444 556666665433 4677888888889999888888888887543 347788889999999999
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHH-----HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHH
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHM-----IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
|.+.|...|++..+..-..+...++.+ ...+.-.+++..|...+.++...+.. |+..-|.-.-+..-.|+...|
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHH
Confidence 999999999977655444444444333 34466678888899999888887543 555555555555567889999
Q ss_pred HHHHHHHHhCCCCCCcccHHHH
Q 010853 181 YQLLEEGIQFGYLPSEHTYKVL 202 (499)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~l 202 (499)
++.++.|+.. .|...+-+++
T Consensus 306 iK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 306 LKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHhcc--CCccchhhhH
Confidence 9999999874 4555444433
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.13 E-value=0.0046 Score=41.19 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTW 481 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 481 (499)
..|.+.+++++|.++++.+...++. +...+.....++.+.|++++|.+.++...+ ..|+....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHH
Confidence 3455666666666666666665433 455555566666666666666666666665 33444433
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.13 E-value=0.013 Score=50.23 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHH
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PNIVCYNVVID 451 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 451 (499)
|...+..+.+.|++++|...|+.+++..+... ...+..+..+|...|++++|...|+.+.+.... .....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666654433211 234555666666666666666666666654211 11233444445
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+...|+.++|.+++++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55566667777777666655
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.11 E-value=0.002 Score=43.63 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC-HHhHHHHHHHHHcCCCHhHHHHHHHhc
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN-NAAFANLVDSLCREGYVNEVFRIAEDM 117 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 117 (499)
..+|+.+...+...|++++|...+.+.++.....+...+. ..++..+..++...|++++|++.+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888888889999999998888887763333222333 456667777777777777777776654
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.10 E-value=0.2 Score=45.21 Aligned_cols=392 Identities=14% Similarity=0.125 Sum_probs=197.5
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 27 AITGEMDVAYKVFDEMRHC--GVLP------------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
-+.+++.+|++.+....+. +..| |-..=+..+..+...|++.+++.++.+++.++-.. ...++..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkr-E~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKR-ECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhh-hhcccHH
Confidence 6777888888877777654 2222 11122335567777888888888888877777655 6667777
Q ss_pred hHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 93 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 93 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
+|+.++-.+++.=-++ +-+. ...+.-|+ |--++..|.+.=.. ++.-.-..+.|-......++....
T Consensus 169 ~yd~~vlmlsrSYfLE----l~e~-~s~dl~pd---yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLE----LKES-MSSDLYPD---YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHHHHhHHHHHH----HHHh-cccccChH---HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHH
Confidence 7777665554421111 1111 11122222 11233333221100 000000011222222222222221
Q ss_pred c--cCChhHHHHHHHHHHhCCCCCCccc-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC----chhhHHHHHHHHhccC
Q 010853 173 K--HGGCMRAYQLLEEGIQFGYLPSEHT-YKVLVEGLCGESDLEKARKVLQFMLSKKDVD----RTRICNIYLRALCLIK 245 (499)
Q Consensus 173 ~--~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~ 245 (499)
- ..+..--.++++.....-+.|+-.. ...+...+.. +.+++..+.+.+......+ -...+..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112222333333333344454322 2233333333 5555555555554322111 1235667777777788
Q ss_pred ChHHHHHHHHHHHhcCCCCCHhhH-------HHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCH-HHHHHH---HH
Q 010853 246 NPTELLNVLVFMLQTQCQPDVITL-------NTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDA-VTFTTI---IF 310 (499)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l---~~ 310 (499)
+...|.+.+.-+.--.+ +...- ..+-+..+. .-+...-+.+++.+...+. |. ..-..+ ..
T Consensus 313 ~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di---DrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI---DRQQLVHYLVFGAK 387 (549)
T ss_pred hHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc---cHHHHHHHHHHHHH
Confidence 88888777766654432 22111 111222221 1122333445555544321 21 111112 23
Q ss_pred HHHccCC-HHHHHHHHHHHhccCCCCCchhhHHHHH----HHHH---hcCCHHHHHHHHHHHhhCCCCcC----HHhHHH
Q 010853 311 GLLNVGR-IQEALNLLYQVMPQRGYSPGIVTYNAVL----RGLF---RLRRVEEAKEVFNCMLGIGVVAD----STTYAI 378 (499)
Q Consensus 311 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ll----~~~~---~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 378 (499)
-+-+.|. -++|+++++.++.-. +-|..+-+.+. .+|. ....+.+-..+-+-+.+.|++|- ...-|.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 3444555 778888887755332 22333322222 2222 12345556666666677787763 334555
Q ss_pred HHHH--HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 379 VIDG--LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 379 l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.=
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 5544 4568999888766555533 5789999999999999999999999999875 6777777653
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.19 Score=44.75 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=55.4
Q ss_pred HHHccCCHHHHHHHHHHHhccC--CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 311 GLLNVGRIQEALNLLYQVMPQR--GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
-..+.|++..|.+.|.+.+... ++.|+...|.....+..+.|+.++|+.--+...+.. +.-...+..-..++...++
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEK 336 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHH
Confidence 3456788888888887765332 233445556666666677788888887777776542 1111222223345556677
Q ss_pred hhhHHHHHHHHhcCC
Q 010853 389 LDEAKRFWDDIVWPS 403 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~ 403 (499)
+++|.+-++...+..
T Consensus 337 ~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHhhc
Confidence 788877777775443
No 211
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.34 Score=46.71 Aligned_cols=118 Identities=13% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH
Q 010853 332 RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 411 (499)
Q Consensus 332 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 411 (499)
.+..-...+.+--+..+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+... ++.-|
T Consensus 678 ~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy 747 (829)
T KOG2280|consen 678 FGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGY 747 (829)
T ss_pred hccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCc
Confidence 3333344456666777888899999998877764 5788888888999999999998887766553 23457
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
..+..+|.+.|+.++|.+++.+... . .-.+.+|.+.|++.+|.++.-+
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 8888999999999999988865421 1 1567788889998888776543
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.01 E-value=0.06 Score=44.50 Aligned_cols=168 Identities=15% Similarity=0.044 Sum_probs=93.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVL--PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
.....|++.+|++.|+.+...... --....-.++.++.+.|++..|...+.++++..|..+. .+ ..+-.+..++.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~--~A~Y~~g~~~~ 90 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-AD--YALYMLGLSYY 90 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HH--HHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hh--hHHHHHHHHHH
Confidence 338899999999999999875311 12344556778899999999999999988888776521 11 12222222211
Q ss_pred cC-----------CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 010853 103 RE-----------GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 171 (499)
Q Consensus 103 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 171 (499)
.. +...+|... +..++.-|=...-..+|...+..+.+. =...--.+...|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 11 111223333 333444444444445555555444432 111112356778
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCc----ccHHHHHHHHhcCCCHHHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSE----HTYKVLVEGLCGESDLEKAR 216 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 216 (499)
.+.|.+..|..-++.+++.- |+. .....++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88889999888888887752 333 34566777777777776443
No 213
>PRK15331 chaperone protein SicA; Provisional
Probab=97.01 E-value=0.097 Score=40.47 Aligned_cols=87 Identities=9% Similarity=-0.029 Sum_probs=47.7
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
+...|++++|..+|+-+...++. +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 34456666666666655544333 344455555555556666666666655544432 2444444555556666666666
Q ss_pred HHHHHHHHH
Q 010853 463 YQILREMRK 471 (499)
Q Consensus 463 ~~~~~~m~~ 471 (499)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665554
No 214
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.94 E-value=0.25 Score=43.64 Aligned_cols=289 Identities=15% Similarity=0.072 Sum_probs=172.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh--cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC--GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL 251 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 251 (499)
.|+-..|.+.-.+..+ -+..|...+..++.+-. -.|+++.|.+-|+.|... ......-...+.-...+.|+.+.|.
T Consensus 97 AGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4566666665554432 13345555555555433 468888888888888631 1111112233333445678888888
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHH--HHHHHHHH---ccCCHHHHHHHHH
Q 010853 252 NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF--TTIIFGLL---NVGRIQEALNLLY 326 (499)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~---~~~~~~~a~~~~~ 326 (499)
++-+..-..-.. -...+...+...+..|+++.|+++++.-.....+.++..-- ..|+.+-. -..+...|.+.-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 777766555332 34566778888889999999999998877766556654322 22222211 1223444544332
Q ss_pred HHhccCCCCCchhh-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc-CCC
Q 010853 327 QVMPQRGYSPGIVT-YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-PSN 404 (499)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~ 404 (499)
+..++.||..- -.....++.+.|+..++-.+++.+-+.. |.+.++... .+.+.|+ .+..-+++..+ ...
T Consensus 254 ---~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~sl 324 (531)
T COG3898 254 ---EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKLESL 324 (531)
T ss_pred ---HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhc
Confidence 34455666432 2233467889999999999999999874 444443322 3445555 33333332211 112
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCC
Q 010853 405 IH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-CKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 405 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+| +..+-..+.++-...|++..|..--+..... .|....|..|.+.- ...|+-.++...+.+..+.--.|
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 22 4556667778888889998887776666554 67777887777764 44599999999988887643333
No 215
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.038 Score=46.39 Aligned_cols=100 Identities=17% Similarity=0.122 Sum_probs=74.0
Q ss_pred hhHHHHH--HhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHH
Q 010853 20 ASLTSAL--AITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 95 (499)
Q Consensus 20 ~~~~~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (499)
..|...+ .+.|++..|.+.|...++... ...+..+.-|..++...|++++|...|..+.+..++. .--+..+-
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s---~KApdall 219 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS---PKAPDALL 219 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC---CCChHHHH
Confidence 3566666 788999999999999888641 1134456678889999999999988888887766654 22335666
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKS 122 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 122 (499)
-|..+..+.|+-++|...|+.+.+.-+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 677778888888888888888877654
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.47 Score=45.78 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
+.+--+.-+...|+-.+|.++-.+. + -||...|-.-+.+++..+++++-+++-+.... +.-|.-.+.+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F-k----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF-K----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc-C----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 3334444445555555555544331 1 34555555555566666666655555443321 23345555666
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
.+.|+.++|..++.+... . .....+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~--l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--L-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCC--h-------HHHHHHHHHhccHHHHHHHH
Confidence 666666666666655521 1 13445566666666665544
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.86 E-value=0.024 Score=42.22 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHh--------------hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMV--------------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
.++..++.++++.|+.+....+++..= ......|+..+..+++.+|+..+++..|+++++...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 445555566666666655555554332 111123444444444444444444444444444444444
Q ss_pred CCCCchhhHHHHHH
Q 010853 333 GYSPGIVTYNAVLR 346 (499)
Q Consensus 333 ~~~~~~~~~~~ll~ 346 (499)
+++.+..+|..|++
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444444444443
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.81 E-value=0.013 Score=51.57 Aligned_cols=265 Identities=15% Similarity=0.103 Sum_probs=148.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHH--HH-hhhccCCccCHHhHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLW--ER-MKEEEDLSVNNAAFANL 97 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~~~~~~~~~~l 97 (499)
.+++.|+....+.+|+...+.|. -|. .+|+.|..+|.-.+++++|.+.+..=+ .+ +....+ ...+...|
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG---EAKssgNL 101 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG---EAKSSGNL 101 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc---cccccccc
Confidence 34999999999999999999873 333 456678888888999999987643211 11 111101 11122225
Q ss_pred HHHHHcCCCHhHHHHHHHhc----cCCC-CCCchhhHHHHHHHHHhcCC--------------------hhhHHHHHHHH
Q 010853 98 VDSLCREGYVNEVFRIAEDM----PQGK-SVNEEFACGHMIDSLCRSGR--------------------NHGASRVVYVM 152 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~ 152 (499)
.+.+--.|.+++|+-...+- .+.| ......++-.+...|...|+ ++.|.+.|.+-
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 55555567777775433221 1111 11222344446666655442 22344444332
Q ss_pred Hh----cCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHH----hCCCCC-CcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 153 RK----RGLT-PSLVSYNSIVHGLCKHGGCMRAYQLLEEGI----QFGYLP-SEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 153 ~~----~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
.+ .|-. .--..|..|...|.-.|+++.|+...+.-. +.|-+. ....+..+..+++-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 21 1100 011234445555555678888877655422 222111 2356677778888888888888888765
Q ss_pred Hh----CC-CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 223 LS----KK-DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ-----CQPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 223 ~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
.. .+ .......+..+...|.-..++++|+.++..-+..- .--....+-+|..+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 11 22234456667777777777888887765433210 1113445667778888888888887776654
Q ss_pred h
Q 010853 293 V 293 (499)
Q Consensus 293 ~ 293 (499)
.
T Consensus 342 l 342 (639)
T KOG1130|consen 342 L 342 (639)
T ss_pred H
Confidence 4
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.77 E-value=0.39 Score=43.38 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=111.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHH-HHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY-AAMI 415 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li 415 (499)
...|...+.+-.+..-.+.|..+|-++.+.| +.++..++++++..++ .|+...|..+|+.-... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456777777778888999999999999988 5678888899887655 58889999999865543 2344444 5677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 491 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 491 (499)
..+...++-+.|..+|+..+.. +..+ ...|..+|..-..-|+...+..+-++|.. +.|...+...+..-|+-.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik 548 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence 7888889999999999966543 1222 45889999888889999999988888876 566666666666555443
No 220
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.76 E-value=0.015 Score=48.58 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=34.7
Q ss_pred CcCHHhHHHHHHHHHh-----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 370 VADSTTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
.-|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 3466666666666643 35566666777777777777788888887777654
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.75 E-value=0.042 Score=40.89 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=44.2
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhc---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVW---------------PSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|..++..++.++++.|+.+....+++..=. ....|+..+..+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888888876521 11223444444444444444455555444444433
Q ss_pred -cCCCCChhhHHHHHH
Q 010853 437 -SGVTPNIVCYNVVID 451 (499)
Q Consensus 437 -~~~~~~~~~~~~l~~ 451 (499)
.+++.+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 233333444444443
No 222
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.75 E-value=0.37 Score=42.76 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=11.7
Q ss_pred HHHHHHHHhccCCHHHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVL 73 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~ 73 (499)
|..+.......|+..-|..+
T Consensus 3 ~a~IA~~A~~~GR~~LA~~L 22 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKL 22 (319)
T ss_pred HHHHHHHHHHcChHHHHHHH
Confidence 45555556666666666553
No 223
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.26 Score=42.03 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=90.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh
Q 010853 59 RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 138 (499)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (499)
......|++.+|..++..++...++. ...-..+..++...|+++.|..++..+..............-|..+.+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 45567788888888888887766554 233444778888888888888888888765433333333344555666
Q ss_pred cCChhhHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHhcCCC
Q 010853 139 SGRNHGASRVVYVMRKRGLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LPSEHTYKVLVEGLCGESD 211 (499)
Q Consensus 139 ~~~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 211 (499)
.....+...+-...... | |...-..+...+...|+.+.|++.+-.+.+... .-|...-..++..+.-.|.
T Consensus 216 aa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 66666555555555543 3 555556677777778888888777666654321 1234444555555555553
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.014 Score=45.41 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=40.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
...|+++.|.++++.+.... +.+...|..++.++...|+..+|...|.++...+.+.-|+.|+..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 56677777777777777654 346667777777777777777777777777666665556666654
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.58 E-value=0.0087 Score=40.46 Aligned_cols=61 Identities=18% Similarity=0.249 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDS----GVT-PN-IVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|+.+..+|...|++++|+..|++..+. |-. |+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666667777776666666532 111 11 3456666666777777777777776654
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.013 Score=39.05 Aligned_cols=49 Identities=29% Similarity=0.294 Sum_probs=19.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
.+.++++.|.++++.+.... +.+...+.....++.+.|++.+|...+.+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 33444444444444443332 22333333333344444444444444443
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.46 E-value=0.59 Score=41.51 Aligned_cols=279 Identities=15% Similarity=0.091 Sum_probs=175.3
Q ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHhCCCCCchhhHHHHH--HHHhccCChHHHHHHHHHHHhcCCCCCHh--hHHHH
Q 010853 199 YKVLVEGLC--GESDLEKARKVLQFMLSKKDVDRTRICNIYL--RALCLIKNPTELLNVLVFMLQTQCQPDVI--TLNTV 272 (499)
Q Consensus 199 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 272 (499)
|..|-.++. ..|+-..|.++-.+..+ -...+..-.-.++ ++-.-.|+++.|.+-|+.|... |... -...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 46788888887776542 2333333333333 3444589999999999999854 2221 12233
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhh--HHHHHHHHH-
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT--YNAVLRGLF- 349 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~ll~~~~- 349 (499)
.-.-.+.|..+.|.+.-+.....- +.-...+...+...+..|+++.|+++++......-+.++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333456789999999888877653 344677888999999999999999999886655555565432 222332221
Q ss_pred --hcCCHHHHHHHHHHHhhCCCCcCHHh-HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 350 --RLRRVEEAKEVFNCMLGIGVVADSTT-YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 350 --~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
-..+...|...-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--t 310 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--T 310 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--c
Confidence 123566666666655553 455432 223356789999999999999999776666553 32 223445555 3
Q ss_pred HHHHHHHHHHc-CCCC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc-CC
Q 010853 427 AVHFLYELVDS-GVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR-GN 493 (499)
Q Consensus 427 a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~ 493 (499)
++.-+++.... .++| +....-.+..+-...|++..|..--+...+ ..|....|-.|.+.-... ||
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGD 378 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGD 378 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCc
Confidence 44444443321 1233 455666777888889999888777776655 678888888777665433 54
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.042 Score=48.68 Aligned_cols=99 Identities=11% Similarity=-0.061 Sum_probs=51.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCcc---------CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCch
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV---------NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEE 126 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 126 (499)
.-.+.+.+.|++..|...|.+++..+.......+ -..++..+.-++.+.+++.+|++..+.....+. +|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cch
Confidence 3445788889999999888888777764433322 112333344444444444444444444444433 333
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+.-.-..++...|+++.|...|+.+.+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 33333344444444444444444444443
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.42 E-value=0.68 Score=41.71 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLN---VGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
..++-.|....+++...++.+.+.....+ ......-.....++.+ .|+.++|++++...+ .....+++.+|..+
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHHH
Confidence 33444566666677777777666653211 0111222233344444 666666666666532 22223444455555
Q ss_pred HHHH
Q 010853 345 LRGL 348 (499)
Q Consensus 345 l~~~ 348 (499)
...|
T Consensus 224 GRIy 227 (374)
T PF13281_consen 224 GRIY 227 (374)
T ss_pred HHHH
Confidence 5444
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=96.39 E-value=0.084 Score=40.80 Aligned_cols=87 Identities=10% Similarity=-0.041 Sum_probs=61.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
+...|++++|..+|.-+...+ +-+..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 456788888888888777655 345666677777777788888888888776544332 333455567778888888888
Q ss_pred HHHHHHHHH
Q 010853 428 VHFLYELVD 436 (499)
Q Consensus 428 ~~~~~~~~~ 436 (499)
...|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888877776
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.30 E-value=0.49 Score=41.49 Aligned_cols=61 Identities=11% Similarity=-0.004 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHhcCCCCChh--hHHHHHHHHHccCC--hhHHHHHHHHHHhCCCCCCcccHHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLV--SYNSIVHGLCKHGG--CMRAYQLLEEGIQFGYLPSEHTYKVLV 203 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 203 (499)
+.+..+|+.+.+.|...+.. ....++..+..... ...+.++++.+.+.|+++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 44566666666655543322 22222222221111 335666677777777666665555443
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.26 E-value=0.07 Score=48.54 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=73.6
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
+.+...++.+..+|...|++++|...|++.++.++.... .+|..+..+|...|+.++|++.+++.++.+ .+ .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 446778999999999999999999999998876544221 468999999999999999999999998852 11 232
Q ss_pred HHHH--HHHhcCChHHHHHHHHHHHHCCCC
Q 010853 448 VVID--GACKLSMKREAYQILREMRKNGLN 475 (499)
Q Consensus 448 ~l~~--~~~~~g~~~~a~~~~~~m~~~g~~ 475 (499)
.+.. .+....+..+..++++.+.+.|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 2111 112233445677788888777653
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.23 E-value=0.31 Score=35.86 Aligned_cols=64 Identities=14% Similarity=0.267 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 440 (499)
....+......|.-+.-.+++.++.+ +-.+++...-.+..+|.+.|+..++.+++.++.+.|++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34444555556666666666666543 23445555556666666666666666666666666543
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.21 E-value=0.32 Score=35.81 Aligned_cols=139 Identities=18% Similarity=0.219 Sum_probs=79.7
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
-.|..++..+++.+..... +..-+|.+|--....-+-+ .+++.+...|--.|. ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~---yvv~~LdsIGkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCD---YVVETLDSIGKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HH---HHHHHHHHHGGGS-G----------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC----Cccccceeeeecchhhchh---HHHHHHHHHhhhcCc----------hhhcchHHHH
Confidence 4566777777777655443 3334444443222222333 333333333322222 2345555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
..+-.+ ..+.......+..+..+|+-+.-.+++.++.+. -.+++...-.+..||.+.|+..++-+++.++.+.|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 554443 224455677788889999999999999998763 36788899999999999999999999999999998
Q ss_pred CC
Q 010853 474 LN 475 (499)
Q Consensus 474 ~~ 475 (499)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.21 E-value=0.53 Score=44.62 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=75.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhcCCHHH
Q 010853 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIV-IDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 426 (499)
..+.+.|.+++..+.+. -|+...|... .+.+...|++++|.+.+++...... +.....+-.+..++...+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34677888888888875 4565554433 4556678888888888887653111 1223345556667778888999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh-------HHHHHHHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMK-------REAYQILREMR 470 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~m~ 470 (499)
|.+.|..+.+.+ ..+..+|..+..+ +...|+. ++|.+++.+..
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999988888764 2244455444433 3456666 77777777764
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.20 E-value=0.14 Score=46.73 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=57.0
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
+.+...++.+..+|...|++++|+..|++..+.. |+. .+|..+..+|...|+.++|...++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999998864 443 35899999999999999999999999864
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.19 E-value=0.23 Score=46.26 Aligned_cols=129 Identities=14% Similarity=0.106 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
.+.++..+.+.|..+.|+++..+-. .-.....+.|+.+.|.++..+ .++...|..|....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L~~A~~~a~~-------~~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNLDIALEIAKE-------LDDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-HHHHHHHCCC-------CSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCHHHHHHHHHh-------cCcHHHHHHHHHHH
Confidence 4555555555666666655543211 112334455565555553322 12444566666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|+++-|++.|.+... +..|+-.|...|+.+...++.+.....+. ++....++...|+.++..
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHH
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHH
Confidence 666666666666555432 33444455555555555555555443331 333344444455555555
Q ss_pred HHHH
Q 010853 429 HFLY 432 (499)
Q Consensus 429 ~~~~ 432 (499)
+++.
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 238
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.63 Score=38.46 Aligned_cols=87 Identities=10% Similarity=0.083 Sum_probs=41.9
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHH
Q 010853 53 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHM 132 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 132 (499)
.|.....+|-...++++|...+.+..+-.... ...|. ....++.|.-+.+++.+.. --+..++..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnn------rslfh-------AAKayEqaamLake~~kls--Evvdl~eKA 97 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENN------RSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc------ccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHH
Confidence 34455566666777777776555554322211 11111 1122344444444443321 112334445
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 010853 133 IDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
...|..+|..+.|-..+++.-+
T Consensus 98 s~lY~E~GspdtAAmaleKAak 119 (308)
T KOG1585|consen 98 SELYVECGSPDTAAMALEKAAK 119 (308)
T ss_pred HHHHHHhCCcchHHHHHHHHHH
Confidence 5666677776666666655443
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.76 Score=39.32 Aligned_cols=49 Identities=18% Similarity=0.066 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
|...-..+...+...|+.++|.+.+-.+++...-.-|...-..++..+.
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 4444444555555555555555555554443322233333334444333
No 240
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.04 E-value=0.11 Score=48.36 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 010853 128 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 207 (499)
Q Consensus 128 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 207 (499)
..+.++..+.+.|..+.|+++-.+-.. -.....+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 345556666666666666654432221 234445566666666553321 24456666666666
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 010853 208 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
..|+++.|++.|.+... +..++-.|.-.|+.+...++.......|- ++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666666655431 34444444455555544444444443321 2333334444455555555
Q ss_pred HHH
Q 010853 288 VLN 290 (499)
Q Consensus 288 ~~~ 290 (499)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.069 Score=44.88 Aligned_cols=87 Identities=16% Similarity=0.071 Sum_probs=40.5
Q ss_pred cCCCHhHHHHHHHhccCCCCC--CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCC-hhhHHHHHHHHHccCChh
Q 010853 103 REGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL-TPS-LVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~-~p~-~~~~~~l~~~~~~~~~~~ 178 (499)
+.|++..|...|....+..+. -...++--|..++...|+++.|..+|..+.+.-. .|. +..+--|..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 334455555555554443321 0112233345555555555555555555544311 111 234444555555555555
Q ss_pred HHHHHHHHHHh
Q 010853 179 RAYQLLEEGIQ 189 (499)
Q Consensus 179 ~a~~~~~~~~~ 189 (499)
+|...|+++.+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 242
>PRK11906 transcriptional regulator; Provisional
Probab=95.97 E-value=0.36 Score=44.19 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc
Q 010853 317 RIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFR---------LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 386 (499)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (499)
..+.|+.+|.+........|+- ..|..+..++.. ..+..+|.+.-+...+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3557788888877555556653 344444333322 123456677777777776 66788888887777888
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHH
Q 010853 387 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIV-CYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~ 465 (499)
++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..+..+.--.. .....+..|+. ...++|+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 8899999999988765443 34455556666667889999999998877653221111 22222335554 445667777
Q ss_pred HHH
Q 010853 466 LRE 468 (499)
Q Consensus 466 ~~~ 468 (499)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 644
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.18 Score=44.89 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
+++.+.-++.+.+++..|+...++.+..+ +.|....-.=..+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34445555556666666666666665554 445555555555566666666666666666543
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.95 E-value=0.18 Score=38.08 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=27.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLP--NSLTYSVLVRGVLRTRDVERANVLMFKLWERMK 82 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (499)
.+.|+++.|.+.|+.+..+-... ...+.-.++.++.+.+++++|...++++++..|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 55566666666666655542111 122333355555555555555555555554443
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.90 E-value=0.34 Score=42.42 Aligned_cols=231 Identities=10% Similarity=-0.030 Sum_probs=128.9
Q ss_pred HHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 26 LAITGEMDVAYKVFDEMRHCG--VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
+..+.+.++|+..+......- ...--.+|-.+..+..++|.++++.......++-..+-.+...--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888887776531 001224566777888899988888765433333332222223333455666666666
Q ss_pred CCCHhHHHHHHHhccCC-CCCC---chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhHHHHHHHHHcc
Q 010853 104 EGYVNEVFRIAEDMPQG-KSVN---EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT-----PSLVSYNSIVHGLCKH 174 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-----p~~~~~~~l~~~~~~~ 174 (499)
.-++.+++.+-..-... |..| .-.....+..+....+.++++++.|+...+.... ....+|..|...|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66677776665553322 1111 1133344666777777888888888876653211 1234677888888888
Q ss_pred CChhHHHHHHHHHHh----CCCCCCcccH-----HHHHHHHhcCCCHHHHHHHHHHHHh----CCCCC-chhhHHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQ----FGYLPSEHTY-----KVLVEGLCGESDLEKARKVLQFMLS----KKDVD-RTRICNIYLRA 240 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 240 (499)
.|+++|.-+..+..+ .++..-..-| ..|.-++...|.+..|.+..++..+ .|..+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888887766554432 1221111112 2233455566777667666665432 22222 12244445555
Q ss_pred HhccCChHHHHHHHHH
Q 010853 241 LCLIKNPTELLNVLVF 256 (499)
Q Consensus 241 ~~~~~~~~~a~~~~~~ 256 (499)
|...|+.+.|+.-|+.
T Consensus 256 yR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHhcccHhHHHHHHHH
Confidence 6666666666555543
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.87 E-value=1.1 Score=39.21 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=33.1
Q ss_pred hHHHHHHHHHccCChh---HHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 163 SYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
++..++.+|...+..+ +|.++++.+.... .-...++..-++.+.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 4455566666655443 3444555553322 11234444555666666777777777777764
No 247
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.63 E-value=0.23 Score=42.50 Aligned_cols=76 Identities=13% Similarity=0.275 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHhHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK-----NGLNPDAVTWRILD 485 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~ 485 (499)
+..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 444445555555555555555555544322 444555555555555555555555544432 45555555555444
Q ss_pred HH
Q 010853 486 KL 487 (499)
Q Consensus 486 ~~ 487 (499)
+.
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.47 Score=41.14 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=101.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH----HHHHHHhcC
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA----VLRGLFRLR 352 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~ 352 (499)
.-.|+..+|-..++++.+.. +.|...+...-.+|...|+...-...+++++..- .+|...|.. ..-++...|
T Consensus 114 ~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhc
Confidence 34677777777888888765 6778888888888888888888888888876553 344333322 222344678
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP---SNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
-+++|++.-++..+.+ +.|.-.-..+...+.-.|+..++.++..+-... +.-.-...|-...-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 8888888888888765 556666667777777788888888877654311 000111123333345556678888888
Q ss_pred HHHHHH
Q 010853 430 FLYELV 435 (499)
Q Consensus 430 ~~~~~~ 435 (499)
+|+.=+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 886543
No 249
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.54 E-value=1.8 Score=39.34 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=83.1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC-YNVVID 451 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 451 (499)
.+|..++++-.+..-++.|+.+|-++.+.+ ..+++.++++++..++. |+..-|..+|+--... -||... -+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356667777778888999999999999888 67888899999988775 6788899999876554 344443 355666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHhcccCC
Q 010853 452 GACKLSMKREAYQILREMRKNGLNPD--AVTWRILDKLHGNRGN 493 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~ 493 (499)
-+...++-+.|..+|+..... +..+ ...|..++..=..-|+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~ 517 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGS 517 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcc
Confidence 778888888888888865432 2223 4566666654444443
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.50 E-value=0.63 Score=35.19 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHhhCCC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+.|++++|.+.|+.+...-. +-....--.|+.+|.+.++++.|...+++.++..+.....-|-..+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 355666666666666655410 11223344455556666666666666666655544433333444444443
No 251
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.49 E-value=3 Score=41.44 Aligned_cols=187 Identities=13% Similarity=0.130 Sum_probs=94.1
Q ss_pred HHHHHHHHHH-hCCCCC--ChhhHHHHHHHHh-ccCCHHHHHHHHHHHHHHhhhccCCc-cCHHhHHHHHHHHHcCCCHh
Q 010853 34 VAYKVFDEMR-HCGVLP--NSLTYSVLVRGVL-RTRDVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGYVN 108 (499)
Q Consensus 34 ~a~~~~~~~~-~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 108 (499)
-|++.++-+. ....+| +..++-.+...+. ...+++.|+..+.+.+...... +.. ..-..-..++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhcCHHH
Confidence 4566666666 333333 2344455666665 5677888888777665544331 211 11222334455555555544
Q ss_pred HHHHHHHhccCC----CCCCchhhHHHH-HHHHHhcCChhhHHHHHHHHHhcC---CCCChhhHHHHHHHHH--ccCChh
Q 010853 109 EVFRIAEDMPQG----KSVNEEFACGHM-IDSLCRSGRNHGASRVVYVMRKRG---LTPSLVSYNSIVHGLC--KHGGCM 178 (499)
Q Consensus 109 ~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~--~~~~~~ 178 (499)
|...++...+. +..+....|..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 76666653322 222333344433 333333468888888887766542 2233334444444443 345455
Q ss_pred HHHHHHHHHHhCC---------CCCCcccHHHHHHHH--hcCCCHHHHHHHHHHH
Q 010853 179 RAYQLLEEGIQFG---------YLPSEHTYKVLVEGL--CGESDLEKARKVLQFM 222 (499)
Q Consensus 179 ~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 222 (499)
.+.+.++.+.... ..|...+|..+++.+ ...|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666553211 122334555555544 3566666666555544
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=3.1 Score=41.16 Aligned_cols=179 Identities=13% Similarity=0.057 Sum_probs=112.3
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccC--HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 53 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
....-+..+.+..-++-|..+... .+..++ ...+..-.+-+.+.|++++|...|-+-... ..|+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~--------~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s----- 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS--------QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS----- 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----
Confidence 445566777777777777664321 122222 123333445556789999998766554321 1122
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
.+|.-|....+..+--.+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+..- .|.. ..-....+..+.+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 2566667777778888889999999887 77777889999999999998777766543 2221 123455667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 211 DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
-.+.|..+-..... ....... .+-..+++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 77777666554432 1222222 334467888888887655
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=95.42 E-value=2.1 Score=39.43 Aligned_cols=150 Identities=10% Similarity=-0.002 Sum_probs=98.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHcc---------CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh
Q 010853 281 RIEEALKVLNDMVAGKFCAPD-AVTFTTIIFGLLNV---------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 350 (499)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 350 (499)
..+.|+.+|.+........|+ ...|..+..++... ....+|.++-.+..+.. +.|......+..+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 467888899998843322443 66777777665432 23446666666655544 3456666666666677
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010853 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
.++++.|..+|+.....+ +....+|......+.-.|+.++|.+.+++..+.++.. -..+....++.|+.. ..+.|++
T Consensus 351 ~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 788999999999999875 3345566666667778999999999999976654422 222333344466654 4678888
Q ss_pred HHHHH
Q 010853 430 FLYEL 434 (499)
Q Consensus 430 ~~~~~ 434 (499)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 77543
No 254
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.41 E-value=1.4 Score=37.05 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=27.4
Q ss_pred HcCCCHhHHHHHHHhccCCCCC--CchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 102 CREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+.|++++|.+.|+.+....+. -...+.-.++-++.+.++++.|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455566666666555544321 11233333444555566666666666655554
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.83 Score=39.69 Aligned_cols=154 Identities=14% Similarity=0.040 Sum_probs=110.5
Q ss_pred hccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHH----HHHHHHHHccCC
Q 010853 242 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTF----TTIIFGLLNVGR 317 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~ 317 (499)
...|+..+|-..++++++.- +.|...++..=.+|.-.|+.+.....++++...- .+|...| .....++...|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 45677888888888888775 4488888888899999999999999999988653 3444333 344556678999
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCcCHHhHHHHHHHHHhcCChhhHHH
Q 010853 318 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYAIVIDGLCESNQLDEAKR 394 (499)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~ 394 (499)
+++|.+.-++.++-+ +-|.-.-.+....+-..+++.++.++..+-... +--.-..-|....-.+...+.++.|.+
T Consensus 191 y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999888866554 345555666777777889999999887655432 111112234445556677899999999
Q ss_pred HHHHHh
Q 010853 395 FWDDIV 400 (499)
Q Consensus 395 ~~~~~~ 400 (499)
+|+.-+
T Consensus 269 IyD~ei 274 (491)
T KOG2610|consen 269 IYDREI 274 (491)
T ss_pred HHHHHH
Confidence 998655
No 256
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.14 E-value=0.22 Score=41.96 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCchhhHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH
Q 010853 335 SPGIVTYNAVLRGLFR-----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 409 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 409 (499)
.-|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 4566778888877754 3567777778889999999999999999998775432 2222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (499)
++....--|-++ -+-+++++++|..+|+.||..+-..|+.++.+.+-.
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 222222223222 346788888888888888888888888888776654
No 257
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.09 E-value=3.1 Score=39.42 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=46.6
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHH-hcCChhhHHHHHHHHHhc-CCC-CChhhHHHHHHHHHc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC-RSGRNHGASRVVYVMRKR-GLT-PSLVSYNSIVHGLCK 173 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~-g~~-p~~~~~~~l~~~~~~ 173 (499)
....-.+.|..+.+.++|++-...- +-+...|......+. ..|+.+...+.|+..... |.. -+...|...|..-..
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~ai-p~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~ 163 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAI-PLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG 163 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc
Confidence 3344445566666666666655422 233444444433322 235555555555555443 211 123345555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 010853 174 HGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~ 189 (499)
++++.....+|+..++
T Consensus 164 qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 164 QKSWKRVANIYERILE 179 (577)
T ss_pred cccHHHHHHHHHHHHh
Confidence 6666666666666655
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.04 E-value=1.2 Score=34.20 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 010853 201 VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 280 (499)
Q Consensus 201 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (499)
.++..+...+.......+++.+...+ ..+....+.++..|++.+ .++..+.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555554433 233444455555554332 2222222221 012223334455555555
Q ss_pred CHHHHHHHHHHH
Q 010853 281 RIEEALKVLNDM 292 (499)
Q Consensus 281 ~~~~a~~~~~~~ 292 (499)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.01 E-value=1.2 Score=34.15 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..++..+...+.......+++.+...+ ..+....+.++..|++.. ..+.++.+.. ..+......+++.|.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 455666666667777777777766654 345566667777776543 2334444432 122334445666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc-CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
+.+.++++..++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 66777777777666532 11222223333 6666666666542 14445666655544
No 260
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.98 E-value=2.3 Score=37.37 Aligned_cols=128 Identities=11% Similarity=0.030 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHc--cC----ChhHHHHHHHHHHhCCC---CCCcccHHHHHHHHhcCCC---
Q 010853 144 GASRVVYVMRKRGLTPSLVSYNSIVHGLCK--HG----GCMRAYQLLEEGIQFGY---LPSEHTYKVLVEGLCGESD--- 211 (499)
Q Consensus 144 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--- 211 (499)
+...+++.|.+.|..-+..+|-+..-.... .. ....|..+|+.|++... .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455555555555444444332222111 11 13345566666655432 1222333333322 2222
Q ss_pred -HHHHHHHHHHHHhCCCCCchh--hHHHHHHHHhccCC--hHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 010853 212 -LEKARKVLQFMLSKKDVDRTR--ICNIYLRALCLIKN--PTELLNVLVFMLQTQCQPDVITLNTVI 273 (499)
Q Consensus 212 -~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (499)
.+.++.+|+.+...|...... ....++........ ..++.++++.+.+.|+++....|..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 234455555555544443322 22222222222222 235666777777777776666665443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.91 E-value=0.12 Score=30.07 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=11.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+..+|...|++++|.++|+++++.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.84 E-value=0.98 Score=39.74 Aligned_cols=229 Identities=12% Similarity=0.027 Sum_probs=111.3
Q ss_pred hcCCCHHHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc--CCC---CCHhhHHHHHHHHHhc
Q 010853 207 CGESDLEKARKVLQFMLSKK--DVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT--QCQ---PDVITLNTVINGFCKM 279 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~ 279 (499)
....+.++++..+.+.+.+- ....-.++..+..+.++.|.+++++..--.-.+. ... .-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777776665431 1112234555566666666666655432111110 000 0122333344444444
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc----hhhHHHHHHHHHhcC
Q 010853 280 GRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLR 352 (499)
Q Consensus 280 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~ 352 (499)
-++.+++.+-..-....+..|. .....++..++...+.++++++.|+..++-..-..| ...+..+-..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444554444443333222221 122334555666666677777777766644332222 235666666677777
Q ss_pred CHHHHHHHHHHHhh----CCCCcCHH-----hHHHHHHHHHhcCChhhHHHHHHHHhc----CCCCC-CHHHHHHHHHHH
Q 010853 353 RVEEAKEVFNCMLG----IGVVADST-----TYAIVIDGLCESNQLDEAKRFWDDIVW----PSNIH-DNYVYAAMIKGL 418 (499)
Q Consensus 353 ~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~ 418 (499)
|+++|.-+..+..+ .++..=.. +...+.-++...|....|.+..++..+ .|..+ -......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 77777666554432 22111111 122333455566666666666665532 22221 112334555666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 010853 419 CRSGKIHEAVHFLYELV 435 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~ 435 (499)
...|+.+.|+.-+++..
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 66777777666666554
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.80 E-value=0.42 Score=41.02 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SGVTPNIVCYNV 448 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 448 (499)
.++..++..+...|+.+.+...++++....+. +...|..++.+|.+.|+...|++.|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34556667777777777777777777765544 666777777777777777777777777654 577777776666
Q ss_pred HHHH
Q 010853 449 VIDG 452 (499)
Q Consensus 449 l~~~ 452 (499)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 264
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.79 E-value=1.8 Score=40.07 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=44.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..+-..+..++.+.|+.++|.+.++++.+..+.. +..+...|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3344556667777888888888888886543322 333667788888888888888888877543
No 265
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.78 E-value=3.7 Score=41.01 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=101.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHHH-HHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSL-------TYSVLVR-GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
..+.++.+|..++.++...-..|+.. .++.+-. .....|+++.+..+.+..+.+.++. ...+....+..+.
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~-~~~~r~~~~sv~~ 504 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA-AYRSRIVALSVLG 504 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-cchhhhhhhhhhh
Confidence 67788888888888876543222221 2333222 2345778888888888888777765 5566667777777
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCch---hhHHHHH--HHHHhcCCh--hhHHHHHHHHHhcCC--C----CChhhHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEE---FACGHMI--DSLCRSGRN--HGASRVVYVMRKRGL--T----PSLVSYN 165 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~--~~~~~~~~~--~~A~~~~~~~~~~g~--~----p~~~~~~ 165 (499)
.+..-.|++++|..+.....+....-+. ..|..+. ..+...|+. .+....|........ + +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7888888888888776665443221222 2222222 234455632 222333333322210 1 1122334
Q ss_pred HHHHHHHcc-CChhHHHHHHHHHHhCCCCCCcccH--HHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 166 SIVHGLCKH-GGCMRAYQLLEEGIQFGYLPSEHTY--KVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 166 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
.++.++.+. +...++..-+.-.......|-...+ ..|+......|+++.|...++++..
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444444441 1111122222221111111111122 2566667777888888777777654
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.64 E-value=2.3 Score=35.73 Aligned_cols=187 Identities=14% Similarity=0.104 Sum_probs=104.8
Q ss_pred CCCCChhhHHHHH--HhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCcc
Q 010853 14 SPFPPVASLTSAL--AITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 89 (499)
Q Consensus 14 ~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (499)
...|...-+...+ .+.|++++|.+-|+.+..+.. +-...+.-.++-++-+.++++.|....++.+...|.+ |
T Consensus 30 ~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~----~ 105 (254)
T COG4105 30 YNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH----P 105 (254)
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC----C
Confidence 3446666677777 899999999999999987641 1133445556678888999999999888887776654 3
Q ss_pred CHHhHHHHHHHHHcC-------CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 010853 90 NNAAFANLVDSLCRE-------GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV 162 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~ 162 (499)
| ..|..-|.+++.- .|...+.+.|..+. .++.-|=...-...|......+... ..
T Consensus 106 n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~-----LA 167 (254)
T COG4105 106 N-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA-----LA 167 (254)
T ss_pred C-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH-----HH
Confidence 3 2233334443321 12222222222211 1111111111112222222222211 00
Q ss_pred hH-HHHHHHHHccCChhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 163 SY-NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE---HTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 163 ~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
-+ ..+.+.|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|-.++|.+.-+-+.
T Consensus 168 ~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 168 GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 01 23556777888888888888888775 32222 345556677888888888877766554
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.64 E-value=2.8 Score=36.70 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=31.7
Q ss_pred cHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc
Q 010853 198 TYKVLVEGLCGESDLE---KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 260 (499)
Q Consensus 198 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (499)
++..++.++...+..+ +|.++++.+. ...+..+.++..-+..+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~-~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLE-SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3445556666555443 3444444443 222223344445555555566666666666666654
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.63 E-value=0.12 Score=30.01 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
++..+..+|...|++++|+++++++++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 344555666666666666666666655443
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.60 E-value=4.3 Score=38.64 Aligned_cols=164 Identities=16% Similarity=0.107 Sum_probs=102.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcC-CCCC-----HhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQ-CQPD-----VITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDA 302 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 302 (499)
.+..++....-.||-+..++.+.+..+.+ +.-. .-.|..++..++. ....+.|.+++..+.+. -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34555666666677777777776655432 2111 1123333333332 45678899999999876 3665
Q ss_pred HHHHH-HHHHHHccCCHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHH
Q 010853 303 VTFTT-IIFGLLNVGRIQEALNLLYQVMPQRGYSP--GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 379 (499)
Q Consensus 303 ~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (499)
..|.. -...+...|+.++|++.|++.......-+ ....+--+.-++....++++|...|..+.+.. ..+..+|..+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 55543 34566778999999999987653221111 22334455556777899999999999998865 4566666665
Q ss_pred HHH-HHhcCCh-------hhHHHHHHHHh
Q 010853 380 IDG-LCESNQL-------DEAKRFWDDIV 400 (499)
Q Consensus 380 ~~~-~~~~g~~-------~~a~~~~~~~~ 400 (499)
..+ +...|+. ++|..++.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 544 3456766 77888887763
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.43 E-value=0.9 Score=33.46 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=19.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 72 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 72 (499)
+..|+++.|++.|.+.+..- +.++..||.-.+++--+|+.++|..
T Consensus 54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHH
Confidence 34444444444444444321 2244444444444444444444443
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.29 E-value=1.9 Score=33.36 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=25.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhH-HHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTY-AIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
.+.++.+.+..++..+.-. .|..... ..-...+...|++.+|.++|+++..
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 3455666666666655543 2322221 1222334555666666666666543
No 272
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.27 E-value=1.9 Score=37.01 Aligned_cols=62 Identities=5% Similarity=-0.057 Sum_probs=30.0
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhc-CCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKR-GLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
++..+...++..++..+++.+-.+.++..... +..-|...|..+|+.-...|+..-...+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33334444555555555555555555444433 333345555555555555555444444433
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.12 E-value=5 Score=37.39 Aligned_cols=79 Identities=6% Similarity=0.044 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
..+-..+..++.+.|+.++|.+.++++.+.... -.......|+.++...+.+.++..++.+..+....+.-..+|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334445666667788888888888888765332 2334566778888888888888888887755432122344555544
No 274
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.82 E-value=1.1 Score=36.02 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=33.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGVLRTRDVERANVLMFKLWE 79 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (499)
....+.+.|+.+.|++.|.++......+.. ..+-.+|+.....+++..+.....++-.
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344446666666666666666665443432 3344566666666666666655544433
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.72 E-value=1.5 Score=32.42 Aligned_cols=92 Identities=16% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch--hhHHHHHHHHHhcC
Q 010853 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI--VTYNAVLRGLFRLR 352 (499)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~ 352 (499)
+....|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++.++-.|-+... ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4566777777777777766542 4566777777777777777777777777766555433211 12222233355567
Q ss_pred CHHHHHHHHHHHhhCC
Q 010853 353 RVEEAKEVFNCMLGIG 368 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~ 368 (499)
+.+.|..-|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777777777666655
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.46 E-value=7.2 Score=38.16 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh-cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH----hcCCHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC----RSGKIHEA 427 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a 427 (499)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|......|..+ . +-.+..+|. ...+...|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A--~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-A--IYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-H--HHHHHHHHHhCCCcCCCHHHH
Confidence 4455666666666655 3333333222222222 234556666666665555331 1 111111111 12255666
Q ss_pred HHHHHHHHHcC
Q 010853 428 VHFLYELVDSG 438 (499)
Q Consensus 428 ~~~~~~~~~~~ 438 (499)
..++.+..+.|
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 66666666655
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.27 E-value=4.3 Score=33.88 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=95.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
|.....+|....++++|...+.+..+ +...+...|. ..+.++.|.-+.+++.+.. --...|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 44445566666777777776665542 1111111111 1223344444444443321 123345555666667
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC----CCCCchhhHHHHHHHHHhcCCH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR----GYSPGIVTYNAVLRGLFRLRRV 354 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~ 354 (499)
+|.++.|-..+++.-+. ...-++++|+++|.+..... ....-...+...-+.+.+...+
T Consensus 104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77666666555544321 12233344444443322111 0011122233444455566666
Q ss_pred HHHHHHHHHHhhC----CCCcC-HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhcCCHHH
Q 010853 355 EEAKEVFNCMLGI----GVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN---IHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 355 ~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 426 (499)
++|-..+.+-... .--++ -..|-..|-.+....++..|+..++...+.+- .-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 6655544432211 00111 12344445556666788888888877432221 224556677777664 466666
Q ss_pred HHHHH
Q 010853 427 AVHFL 431 (499)
Q Consensus 427 a~~~~ 431 (499)
+..++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 65544
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.19 E-value=0.27 Score=27.05 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 279
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.14 E-value=3.5 Score=32.48 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=74.1
Q ss_pred hccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN 408 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 408 (499)
+...+++|+...+..++..+.+.|.+..... +...++-+|.......+-.+. +.+..+.++--+|.++= .
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL-~--- 89 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL-G--- 89 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh-h---
Confidence 4567788888888888888888887555443 444445555554443332222 22233333333332210 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+..+++.+...|++-+|.++.++.... +...-..++.+..+.++...-..+++-..+
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13566777888888888888888765322 222334566666667776655555555544
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.12 E-value=1.6 Score=35.06 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChh----h
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFLYELVDS---GVTPNIV----C 445 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----~ 445 (499)
.+..+...|.+.|+.+.|.+.+.++.+....+.. ..+-.+|+.....+++..+...+.+.... |-.++.. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666666666666666666666544333222 24455666666666666666665555432 1111111 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 446 YNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
|..+ ++...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345677777777765553
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.12 E-value=11 Score=38.02 Aligned_cols=227 Identities=14% Similarity=0.020 Sum_probs=118.8
Q ss_pred HccCChhHHHHHHHHHHhCCCCCCcc-------cHHHHH-HHHhcCCCHHHHHHHHHHHHhC----CCCCchhhHHHHHH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPSEH-------TYKVLV-EGLCGESDLEKARKVLQFMLSK----KDVDRTRICNIYLR 239 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 239 (499)
....++.+|..++.+....-..|+.. .++.+- ......|+++.+.++.+..... ...+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34678888888888765432233222 122221 2234578889988888877642 22233446667777
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHH-----HHHHhcCC--HHHHHHHHHHHhhCCC-----CCCCHHHHHH
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI-----NGFCKMGR--IEEALKVLNDMVAGKF-----CAPDAVTFTT 307 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~~~-----~~~~~~~~~~ 307 (499)
+..-.|++++|..+..+..+..-.-+...+..+. ..+...|+ ....+..|........ ..+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7888899999998887766543333444333222 23455663 2333333443332211 1122344555
Q ss_pred HHHHHHccCC-HHHHHHHHHHHhccCCCCCchhhH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCc----CHHhHHHHH
Q 010853 308 IIFGLLNVGR-IQEALNLLYQVMPQRGYSPGIVTY--NAVLRGLFRLRRVEEAKEVFNCMLGIGVVA----DSTTYAIVI 380 (499)
Q Consensus 308 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 380 (499)
++.++.+... ..++..-+.- .......|-...+ ..++......|+.++|...+.++......+ +..+....+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~-~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEV-GSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchh-hhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 5555555211 1112111111 1111112222222 256777888999999999988887543222 222222333
Q ss_pred H--HHHhcCChhhHHHHHHHH
Q 010853 381 D--GLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 381 ~--~~~~~g~~~~a~~~~~~~ 399 (499)
. .....|+.+.+.....+-
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hHHHhcccCCHHHHHHHHHhc
Confidence 2 234577877777766653
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.86 E-value=0.98 Score=31.21 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+.+-++.+...++-|++....+.++||.+.+++..|.++++-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555443
No 283
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.72 E-value=0.31 Score=26.76 Aligned_cols=26 Identities=8% Similarity=-0.139 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999964
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.71 E-value=2.5 Score=29.69 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+-++.+...++-|++....+.+++|.+.+++..|.++++-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444555555555555555555555555554443
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.60 E-value=5.5 Score=33.44 Aligned_cols=203 Identities=18% Similarity=0.137 Sum_probs=106.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+......+...+.+..+...+...............+......+...+.+..+...+.......... ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc--chHHHHHH
Confidence 3444555555666666666666666554310013344455555555556666666666665543221111 11111222
Q ss_pred H-HHHhcCCHHHHHHHHHHHhhCCC--CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 346 R-GLFRLRRVEEAKEVFNCMLGIGV--VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 346 ~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
. .+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 46666777777777776644211 01223333333345566677777777776654332213455666666666777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+++.+...+......... ....+..+...+...+..+.+...+.+...
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777776654222 123333344444455666777776666654
No 286
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.33 E-value=9.7 Score=35.63 Aligned_cols=180 Identities=11% Similarity=0.029 Sum_probs=98.8
Q ss_pred CCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 010853 194 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 273 (499)
Q Consensus 194 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 273 (499)
.|......++..+.....+.-++.+..+++.- ..+...+..++++|... ..++-..+|+++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 35556666777777777777777777776643 23444566666666666 556666666666665443 333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 274 NGFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 274 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..|-+ ++...+...|.++..+-.... -...|..+.... ..+.+..+.+..+.-...|...-...+..+-..|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 43333 666666666666654322100 112333333211 34455555655555444454445555556656666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
...++++|++++..+.+.. .-|...-..++.
T Consensus 217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 217 ENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred cccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 7777777777777776654 234443333433
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.30 E-value=8.8 Score=35.04 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=32.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 010853 24 SALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 83 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (499)
....+.|+++...+........ .++...+.++... ..++++++.....+....+..
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~ 61 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLD 61 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHH
Confidence 3446778888744444444332 1344444444333 788888887776666655443
No 288
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.26 E-value=6.4 Score=33.34 Aligned_cols=173 Identities=10% Similarity=0.061 Sum_probs=107.0
Q ss_pred CCCCChhhHHHHH----HhcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC
Q 010853 14 SPFPPVASLTSAL----AITGEMDVAYKVFDEMRHCGVLPNSL---TYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 86 (499)
Q Consensus 14 ~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (499)
.+.|++-.-++-| .+..++++|+.-|++..+........ ++-.++....+.+++++-...|.+++.-+...-.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4467776667766 67789999999999998864333333 3445778899999999999988888877665433
Q ss_pred CccCHHhHHHHHHHHHcCCCHhHHHHHHH-------hccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc----
Q 010853 87 LSVNNAAFANLVDSLCREGYVNEVFRIAE-------DMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---- 155 (499)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 155 (499)
...+..+-|++++......+.+-..+.++ +.+... ....+-+.|...|...+++.+..+++.++...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeR--LWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNER--LWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcce--eeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777776665555444333333 332221 11223345666677777777777777766543
Q ss_pred -CC------CCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010853 156 -GL------TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 156 -g~------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (499)
|- ..=...|..=|..|....+-.....+|++..
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 10 0113345555666666666666666666554
No 289
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.05 E-value=1.8 Score=35.02 Aligned_cols=42 Identities=2% Similarity=-0.133 Sum_probs=20.0
Q ss_pred CCCHhHHHHHHHhccC---CCCCCchhhHHHHHHHHHhcCChhhH
Q 010853 104 EGYVNEVFRIAEDMPQ---GKSVNEEFACGHMIDSLCRSGRNHGA 145 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A 145 (499)
..+.++++.++-+..+ .+-.+|+..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4445555544444321 12234555555555555555555554
No 290
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.04 E-value=0.2 Score=27.14 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a 427 (499)
+...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 333444444444444444443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.87 E-value=5.2 Score=31.51 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 010853 37 KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 72 (499)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 72 (499)
+.++.+.+.+++|++..+..+++.+.+.|++..-..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 444445555666666666666666666666554443
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.86 E-value=5.2 Score=31.42 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=9.3
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 010853 243 LIKNPTELLNVLVFMLQTQ 261 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~ 261 (499)
+.+..++|+.-|..+.+.|
T Consensus 70 ~~~k~d~Alaaf~~lektg 88 (221)
T COG4649 70 QENKTDDALAAFTDLEKTG 88 (221)
T ss_pred HcCCchHHHHHHHHHHhcC
Confidence 3444455555555555444
No 293
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.84 E-value=2.3 Score=40.23 Aligned_cols=150 Identities=15% Similarity=0.070 Sum_probs=85.1
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQ 182 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~ 182 (499)
-.|+++.|..++..+.+ ...+.+.+.+.+.|..++|+++- +|+.. -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 34666666555544442 23344566666677666665432 22221 1233446677777777
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC
Q 010853 183 LLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC 262 (499)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (499)
+..+. .+..-|..|.++....+++..|.+.|..... |..++..+...|+.+....+-....+.|.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 66543 2445677788888888888888887776542 44455555566666555555555554443
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 263 QPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 263 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
. |.-..+|...|+++++.+++..-
T Consensus 724 ~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c------chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 22233455567777776666543
No 294
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.82 E-value=15 Score=36.59 Aligned_cols=86 Identities=15% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc--
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-- 314 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 314 (499)
+...+.-.|.++.|.+++-. ..+...+...+...+..|.-.+-.+... ..+.......|...-+..|+..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34555566777777777765 1222334555444444332222111111 2121111001222556777777764
Q ss_pred -cCCHHHHHHHHHH
Q 010853 315 -VGRIQEALNLLYQ 327 (499)
Q Consensus 315 -~~~~~~a~~~~~~ 327 (499)
..+..+|.+.+.-
T Consensus 339 ~~td~~~Al~Y~~l 352 (613)
T PF04097_consen 339 EITDPREALQYLYL 352 (613)
T ss_dssp TTT-HHHHHHHHHG
T ss_pred hccCHHHHHHHHHH
Confidence 5677788887765
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.72 E-value=6.1 Score=32.03 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCCcccHHHHHHHHhcCCCHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF---GYLPSEHTYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 215 (499)
+.|.+.|-.+...+.--++.....|...|. ..+.+++.+++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455666666665554434444444444443 45566666666655432 2245566666666666666666655
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.62 E-value=0.48 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555444
No 297
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.30 E-value=6 Score=31.08 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=23.6
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEH-TYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
..+..++|+.-|.++.+.|...-+. ....+.......|+...|...|+++-
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 4455566666666665554321110 11112223345555555555555554
No 298
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.21 E-value=0.29 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
|++.++..+. |...|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 4556666533 7889999999999999999886
No 299
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=3.4 Score=35.76 Aligned_cols=48 Identities=13% Similarity=0.290 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
++++++.++..=+..|+-||..+++.+++.+.+.+++..|.++...+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555544443
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.71 E-value=8.2 Score=31.63 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 296 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 296 (499)
+.+||.+.--+...|+++.|.+.|+...+..+.-+-...|.-|..| -.|++..|.+-|-..-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHHHHHHhcC
Confidence 4466666666666777777777776666654433333333333322 3466666666555554443
No 301
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.64 E-value=1.7 Score=34.84 Aligned_cols=95 Identities=11% Similarity=0.019 Sum_probs=50.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh
Q 010853 59 RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 138 (499)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (499)
.-+.+.|++++|..-|...++..+.. ........|..-..++.+.+.++.|+.-.....+.++. ...+...-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~-~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPST-STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccc-cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 34556677777776666666555443 11333344555555666666666666666555555431 11222223344555
Q ss_pred cCChhhHHHHHHHHHhc
Q 010853 139 SGRNHGASRVVYVMRKR 155 (499)
Q Consensus 139 ~~~~~~A~~~~~~~~~~ 155 (499)
...++.|++=|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 55566666666655554
No 302
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.44 E-value=6.9 Score=34.01 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=63.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch
Q 010853 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI 338 (499)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 338 (499)
|......+...++..-....+++.++..+-++...... .|+. +-.+.++.+. .-++++++.++..- -..|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~np-IqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNP-IQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCc-chhccccch
Confidence 33445555555555555567777777777777653210 1111 1112222222 23556777777663 367888888
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
.+++.+|..+.+.+++..|..+...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888777766543
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.11 E-value=0.79 Score=24.45 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444555555555555555555444
No 304
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.03 E-value=40 Score=38.46 Aligned_cols=325 Identities=11% Similarity=-0.013 Sum_probs=151.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHh-ccCCCCCCchhhHHHHHH
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED-MPQGKSVNEEFACGHMID 134 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 134 (499)
.+..+=.+.+.+.+|...+++-.... . .-......|..+...|+.-+++|...-+... ... | .....|.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e--k-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~---sl~~qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE--K-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----P---SLYQQIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc--c-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----c---cHHHHHH
Confidence 44556667777877776554421000 0 1111223344444578888888877666553 211 1 1223445
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccH-HHHHHHHhcCCCHH
Q 010853 135 SLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTY-KVLVEGLCGESDLE 213 (499)
Q Consensus 135 ~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 213 (499)
.....|+++.|...|+.+.+.+.. ....++-++......|.++.+....+..... ..+....+ +.=+.+--+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchh
Confidence 566778888888888888877321 3566777776666677777766655444332 11222222 22233445666777
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHHHHhc--cCChHHHHHHHHHHHhcC--------CC-CCHhhHHHHHHHHHhcCCH
Q 010853 214 KARKVLQFMLSKKDVDRTRICNIYLRALCL--IKNPTELLNVLVFMLQTQ--------CQ-PDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 214 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~--------~~-~~~~~~~~l~~~~~~~~~~ 282 (499)
.....+. .++......-. +.....+ ..+.-.-.+.++-+.+.- .. .-...|..++....-.. .
T Consensus 1536 ~~e~~l~---~~n~e~w~~~~--~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l 1609 (2382)
T KOG0890|consen 1536 LLESYLS---DRNIEYWSVES--IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-L 1609 (2382)
T ss_pred hhhhhhh---cccccchhHHH--HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-H
Confidence 6666554 11221111110 1222221 122111112222222211 11 01123444444332211 1
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC----CC-CCchhhHHHHHHHHHhcCCHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR----GY-SPGIVTYNAVLRGLFRLRRVEEA 357 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a 357 (499)
+...+.+..........-+..-|..-+..-....+..+-+--+++.+... +. .--..+|....+.....|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111111111111001111222222222111112222222222222111 11 12245677777777778999998
Q ss_pred HHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 358 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
...+-...+.+ .| ..+--.+......|+...|..++++...
T Consensus 1690 ~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1690 QNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 88777776655 22 3444556667788999999998888763
No 305
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.02 E-value=3.3 Score=28.75 Aligned_cols=44 Identities=16% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 392 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 392 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+.+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444555555555555555555555555554444
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.99 E-value=1.2 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666777777777777777777765
No 307
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.86 E-value=2.5 Score=40.03 Aligned_cols=130 Identities=13% Similarity=0.084 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 010853 94 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173 (499)
Q Consensus 94 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 173 (499)
.+.++..+-++|..++|+++- +|.. .-.....+.|+++.|.++..+.. +..-|..|.++...
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344666677777777776542 2211 12334456777777777665433 56678888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|....++...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHH
Confidence 8888888888776543 44566666666776655555554443332 23444566677888877777
Q ss_pred HHH
Q 010853 254 LVF 256 (499)
Q Consensus 254 ~~~ 256 (499)
+..
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 643
No 308
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.79 E-value=11 Score=31.58 Aligned_cols=200 Identities=19% Similarity=0.113 Sum_probs=112.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH-
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQT-QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF- 310 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~- 310 (499)
........+...++...+...+...... ........+......+...+++..+...+........ .+.........
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 138 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP--DPDLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--CcchHHHHHHHH
Confidence 4444444444555555555554444431 1122344455555555566666667766666665332 11122222222
Q ss_pred HHHccCCHHHHHHHHHHHhccCCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-CHHhHHHHHHHHHhcC
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGY--SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESN 387 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 387 (499)
.+...|+++.+...+.+... ... ......+......+...++.+.+...+....... +. ....+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56677777777777766532 111 1122233333333556678888888888777753 22 3566777777777888
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+++.+...+......... ....+..+...+...+..+++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888887654332 2334444444555666788888888877765
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.78 E-value=5.4 Score=28.08 Aligned_cols=60 Identities=15% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010853 109 EVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 169 (499)
Q Consensus 109 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 169 (499)
+..+-++.+...+..|++....+.+.+|.+.+++..|.++|+-++.. ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 55666677777777777777777778888888888888887777655 1222225555543
No 310
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.74 E-value=13 Score=32.26 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=25.4
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP-SNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
++..+...++..++..+++.+-.++|+..... ++..|...|..+|+.....|+..-..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 34444444444444444444444444444322 23334444444444444444443333
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.15 E-value=9.1 Score=29.82 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=9.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010853 418 LCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~ 436 (499)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3445555555555555443
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.82 E-value=5.6 Score=33.94 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh---
Q 010853 202 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK--- 278 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 278 (499)
=|.+++..++|.++....-+.-+......+.+....|-.|.+.+++..+.++-...+...-.-+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 35667777777777665555443444445556677777777777777777777776665433344456666655544
Q ss_pred --cCCHHHHHHHH
Q 010853 279 --MGRIEEALKVL 289 (499)
Q Consensus 279 --~~~~~~a~~~~ 289 (499)
.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 57777777766
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.78 E-value=7.5 Score=31.39 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=60.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 421 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (499)
.-+...|++++|..-|...+..-.+... ..|..-..++.+.+.++.|..-..+.++.++. .......-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3467788999999988888876322121 23344445677788888888887777665443 122222334467777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 010853 422 GKIHEAVHFLYELVDSG 438 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~ 438 (499)
..+++|++-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888763
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.58 E-value=15 Score=31.69 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
....+.|..+|.+.+|.++.+.....++ .+...+..++..+...|+--.+.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3345667777777777777777776665 5566677777777777776666666665543
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.44 E-value=1.8 Score=22.98 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=17.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|..+...+...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777777665
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.14 E-value=1.6 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555544
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.07 E-value=4.1 Score=32.28 Aligned_cols=127 Identities=12% Similarity=0.036 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHHHhhhccCCccCH-HhHHHHHHHHHcCCCH
Q 010853 32 MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR---TRDVERANVLMFKLWERMKEEEDLSVNN-AAFANLVDSLCREGYV 107 (499)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 107 (499)
++.|++.++.-.... +.|+..++.-..++.. ..+..++..++++.+.+..+--.+.|+- .++..+..++...+.+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666644433 4566666655555444 4444567777777776666544455553 3445555554433211
Q ss_pred hHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010853 108 NEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 187 (499)
Q Consensus 108 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (499)
.|+.. .....+++|.+.|+..... +|+...|+.-+....+ |-++..++
T Consensus 86 ---------------~~d~~---------~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~k------ap~lh~e~ 133 (186)
T PF06552_consen 86 ---------------TPDTA---------EAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAAK------APELHMEI 133 (186)
T ss_dssp ------------------HH---------HHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHT------HHHHHHHH
T ss_pred ---------------cCChH---------HHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHh------hHHHHHHH
Confidence 01110 0112356677777777765 7888888887777643 55566666
Q ss_pred HhCC
Q 010853 188 IQFG 191 (499)
Q Consensus 188 ~~~~ 191 (499)
.+.+
T Consensus 134 ~~~~ 137 (186)
T PF06552_consen 134 HKQG 137 (186)
T ss_dssp HHSS
T ss_pred HHHH
Confidence 5554
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.02 E-value=1.5 Score=24.76 Aligned_cols=30 Identities=17% Similarity=-0.009 Sum_probs=21.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERM 81 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (499)
.+++.+...|...|++++|..++.+++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467778888888888888888777766543
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.96 E-value=0.23 Score=38.34 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... + +-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence 3556666777788888888888866655667778888888888877777777776221 1 22345666667777
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCCC
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 494 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 494 (499)
.++++.-++.++-... ..+..+...++++.|.+.+.+ .++...|..+++.+...++.
T Consensus 85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 7777766665432211 111112333444444433222 24678899999888877654
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.92 E-value=10 Score=29.01 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=29.6
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
..++++++..++..|.-. .|+.. .-..-...+...|++++|.++|+++...+
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 466777777777776653 23322 12222334566777777777777775443
No 321
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.14 E-value=18 Score=30.83 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH----HHHHccCCHHHHHHHHHHHh
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII----FGLLNVGRIQEALNLLYQVM 329 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~ 329 (499)
.|..-|..|....+-.+...++++...-...-|.+.....+- ....+.|++++|..-|.++.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 344455556555555555555555443322234443333221 22345566666655444444
No 322
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.10 E-value=16 Score=30.40 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=14.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHhC
Q 010853 204 EGLCGESDLEKARKVLQFMLSK 225 (499)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~~ 225 (499)
..-+..+++.+|+++|+++...
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777776543
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.09 E-value=5.3 Score=32.72 Aligned_cols=77 Identities=22% Similarity=0.154 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--VTPNIVCYNVVIDG 452 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 452 (499)
|.+..++.+.+.+.+.+++...+.-++.++. |...-..++..++-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455566777888888888888877766544 55566778888899999999887766555432 22234456666543
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.52 E-value=47 Score=35.05 Aligned_cols=82 Identities=12% Similarity=-0.060 Sum_probs=41.8
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
....+.....+++|.-.|+..- -....+.+|...|+|.+|..+..++.... .--..+-..|+.-+...+
T Consensus 945 ya~hL~~~~~~~~Aal~Ye~~G----------klekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 945 YADHLREELMSDEAALMYERCG----------KLEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHHhccccHHHHHHHHhc----------cHHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcc
Confidence 3344445566666655554321 12234556666777777777766654311 001112244555566666
Q ss_pred ChhhHHHHHHHHh
Q 010853 388 QLDEAKRFWDDIV 400 (499)
Q Consensus 388 ~~~~a~~~~~~~~ 400 (499)
++-+|-++..+..
T Consensus 1014 kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYL 1026 (1265)
T ss_pred cchhHHHHHHHHh
Confidence 6666666665543
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.31 E-value=4.2 Score=33.25 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+..+.+.+.+.+|+...+.-.+..+ .|......++..++-.|++++|..-++..-..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 44555566666666666655554443 34445555666666667777666666555443
No 326
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.58 E-value=4.1 Score=29.86 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+..+...++-|++......+++|.+.+++..|.++|+-.+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555554443
No 327
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.56 E-value=36 Score=32.81 Aligned_cols=408 Identities=11% Similarity=0.013 Sum_probs=204.1
Q ss_pred ChhhHHHHHHhcCC---hHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHh
Q 010853 18 PVASLTSALAITGE---MDVAYKVFDEMRHCGVLPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 93 (499)
Q Consensus 18 ~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 93 (499)
+...|..++....+ .+.+..++..++.. .|... -|-.....-.+.|..+.+..+|++.+..++ .....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip------~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP------LSVDL 115 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh------hHHHH
Confidence 34556666644433 45566677777653 46544 344555666778888888888777766443 34555
Q ss_pred HHHHHHHHH-cCCCHhHHHHHHHhccCCCC--CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010853 94 FANLVDSLC-REGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 170 (499)
Q Consensus 94 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 170 (499)
|...+..+. ..|+.+...+.|+....... -.+...|...|..-..++++.....+++++.+. ....|+....-
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~ 191 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHH
Confidence 555554433 56888888888888664321 123456777888878889999999999999876 23334433333
Q ss_pred HHc---c------CChhHHHHHHHHHHhC---C-CCCCcccHHHHHHHHh-cCCCHHHHHHHHHHHHhCCCCCchhhHHH
Q 010853 171 LCK---H------GGCMRAYQLLEEGIQF---G-YLPSEHTYKVLVEGLC-GESDLEKARKVLQFMLSKKDVDRTRICNI 236 (499)
Q Consensus 171 ~~~---~------~~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (499)
|.. . ...+++.++-...... + ..+.......-+.--. ..+..+.+.....+.. ..
T Consensus 192 f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~ 260 (577)
T KOG1258|consen 192 FKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SI 260 (577)
T ss_pred HHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HH
Confidence 322 1 1223333222222110 0 0000011111111000 0111111111111110 00
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQ-------CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
--..+............++.-.... ..++..+|...+..-.+.|+.+.+.-+|+...--- ..-...|-..+
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--A~Y~efWiky~ 338 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--ALYDEFWIKYA 338 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--hhhHHHHHHHH
Confidence 1111111222222222222222211 12245567777777778888888888887765210 11122333333
Q ss_pred HHHHccCCHHHHHHHHHHHhccC-CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-HhHHHHHHHHHhcC
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQR-GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESN 387 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 387 (499)
.-....|+.+-|..++....+-. .-.|....+.+.+ +-..|++..|..+++.+.+.- |+. ..-..-+....+.|
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhc
Confidence 33334477777766654432111 1122222222222 334578888888888887753 332 22233344556677
Q ss_pred ChhhHH---HHHHHHhcCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 388 QLDEAK---RFWDDIVWPSNIHDNYVYAAMIKG-----LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 388 ~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
+.+.+. .++........ +......+.-- +.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 415 ~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 415 NLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred chhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 777776 33333322111 22222222222 23356788888888888776 3556677777776655544
No 328
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=85.45 E-value=24 Score=30.73 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhcCCHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~ 428 (499)
..|..|+.+++..|+.+-.+
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 35777888888888776544
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.34 E-value=1.6 Score=22.93 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=15.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhh
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMK 82 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~ 82 (499)
.+..++.+.|++++|...+.+++++.|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344555556666666666655555443
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.89 E-value=25 Score=30.47 Aligned_cols=169 Identities=12% Similarity=0.063 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcc---------------------CCccCH
Q 010853 33 DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE---------------------DLSVNN 91 (499)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------~~~~~~ 91 (499)
.+|+++|.-+.... .-+.+-..++.+++...+..+|...+...+-++++.- +...|.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 57999999887753 2345667788999999999999887776665554421 111122
Q ss_pred HhHHHHHHHHHcC-CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010853 92 AAFANLVDSLCRE-GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 170 (499)
Q Consensus 92 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 170 (499)
.-|.+.++..-.. -.++++.++....+..-. ...++.-|...=+.+... -..+++.....
T Consensus 228 ~e~es~~rqi~~inltide~kelv~~ykgdyl---------------~e~~y~Waedererle~l----y~kllgkva~~ 288 (361)
T COG3947 228 QEYESLARQIEAINLTIDELKELVGQYKGDYL---------------PEADYPWAEDERERLEQL----YMKLLGKVARA 288 (361)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHhcCCcC---------------CccccccccchHHHHHHH----HHHHHHHHHHH
Confidence 2222222221111 112222222222211111 011111111111111100 11234445667
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
|..+|.+.+|.++.+..+... +.+...+..++..++..||--.+.+-++++.
T Consensus 289 yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 778888888888887776643 3466777778888888888666666666553
No 331
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.65 E-value=3.6 Score=36.05 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 352 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 352 (499)
.+-|.+.|.+++|++.|....... +-+.+++..-..+|.+...+..|..-....+.-. ..-...|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 345777777777777777666543 3377777777777777777776665444433211 111223444444444455
Q ss_pred CHHHHHHHHHHHhhC
Q 010853 353 RVEEAKEVFNCMLGI 367 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~ 367 (499)
...+|.+-++...+.
T Consensus 180 ~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL 194 (536)
T ss_pred hHHHHHHhHHHHHhh
Confidence 555665555555553
No 332
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=84.50 E-value=4.9 Score=23.84 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=24.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 487 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 487 (499)
..+.|-..++..++++|.+.|+..+...+..+++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34556666777777777777777777777766654
No 333
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.47 E-value=20 Score=28.99 Aligned_cols=57 Identities=9% Similarity=0.042 Sum_probs=25.1
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
|.+.....|.+|+|+..++.....+.. ......-.+.+...|+-++|..-|+.....
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 334444555555555555554443321 111122234444555555555555554444
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.36 E-value=3.7 Score=21.79 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555556666666666666665554
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.28 E-value=1.9 Score=22.94 Aligned_cols=28 Identities=14% Similarity=0.014 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577788899999999999999999876
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.89 E-value=2 Score=21.35 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=8.2
Q ss_pred HHHHHHcCCCHhHHHHHH
Q 010853 97 LVDSLCREGYVNEVFRIA 114 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~ 114 (499)
+...+...|++++|..++
T Consensus 7 la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 7 LARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344444444444444443
No 337
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.61 E-value=0.82 Score=35.24 Aligned_cols=83 Identities=7% Similarity=-0.041 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 211 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (499)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.+..+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4455555666666666666666554444555666666666666655555555541 111222345555555555
Q ss_pred HHHHHHHHHH
Q 010853 212 LEKARKVLQF 221 (499)
Q Consensus 212 ~~~a~~~~~~ 221 (499)
++.+.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 338
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.54 E-value=18 Score=27.73 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 160 SLVSYNSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
+...|..++.+.+.... --.+..+|.-+++.+.++++.-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544333 233445555555545555555555555555443
No 339
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=83.30 E-value=1.5 Score=32.47 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=29.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV 61 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 61 (499)
-+...|+-.+|.++|++|+.+|.+|| .|+.|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34667888899999999999998887 488887764
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.02 E-value=3.3 Score=23.99 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.01 E-value=2.9 Score=21.91 Aligned_cols=23 Identities=17% Similarity=0.472 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444555555555555444
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.84 E-value=22 Score=28.33 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
++|.+.|++..+. .|+..+|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3444444444443 45555555555444
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.66 E-value=20 Score=27.57 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=29.0
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
...++.+++..++..+---..-.+...++...+ +...|++++|..+|+.+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 346666666666655322222223334444443 456667777777777766653
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=82.61 E-value=70 Score=33.87 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcC
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY--VYAAMIKGLCRSG 422 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g 422 (499)
...+.....+++|.-.|+..-+. .--+.+|..+|++.+|..+..++... .+.. +-..|+.-+...+
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcc
Confidence 33344556666666666544221 23456777778888887777766421 1222 2255667777778
Q ss_pred CHHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELVD 436 (499)
Q Consensus 423 ~~~~a~~~~~~~~~ 436 (499)
++-+|-++..+...
T Consensus 1014 kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1014 KHYEAAKILLEYLS 1027 (1265)
T ss_pred cchhHHHHHHHHhc
Confidence 77777777766543
No 345
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.59 E-value=1e+02 Score=35.64 Aligned_cols=325 Identities=11% Similarity=0.000 Sum_probs=169.9
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCC--CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 173 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 173 (499)
.+..+-.+.+.+.+|.-.++.-..... ......+..+...|+.-+++|....+...-. . +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-a----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-A----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-c----CccHHH-HHHHHHh
Confidence 344556677888888888887421111 0122334445558888888888777665411 1 233333 3444567
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHH
Q 010853 174 HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 253 (499)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 253 (499)
.|++..|...|+.+.+.+ ++...+++.++......|.++..+...+-............++.-+.+-.+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 899999999999988754 2236778888887778888888877766665332222233445555666778888877776
Q ss_pred HHHHHhcCCCCCHhhHHHH--HHHHHhc--CCHHHHHHHHHHHhhCCCC--------CCCHHHHHHHHHHHHccCCHHHH
Q 010853 254 LVFMLQTQCQPDVITLNTV--INGFCKM--GRIEEALKVLNDMVAGKFC--------APDAVTFTTIIFGLLNVGRIQEA 321 (499)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a 321 (499)
+. +. +..+|... .....+. .+.-.-.+.++-+.+.-+. ..-...|..++....-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 65 11 22233322 2222221 1211111222222221110 11123444554443322211111
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHH-HHHHHHHhhC----CC-CcCHHhHHHHHHHHHhcCChhhHHHH
Q 010853 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-KEVFNCMLGI----GV-VADSTTYAIVIDGLCESNQLDEAKRF 395 (499)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 395 (499)
.. +...-......-+..-|..-+..-....+..+- ..+-+.+... +. .--..+|-...+....+|.++.|...
T Consensus 1614 ~~-l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 EE-LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HH-hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11 111111111111111121122111111111111 1111111111 11 12346788888888889999999988
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 396 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+-.+.+.+ . ...+-.....+...|+...|+.++++..+..
T Consensus 1693 ll~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1693 LLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 87776554 2 2356667778889999999999999988643
No 346
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=82.12 E-value=38 Score=30.49 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=8.0
Q ss_pred CCCHHHHHHHHHH
Q 010853 299 APDAVTFTTIIFG 311 (499)
Q Consensus 299 ~~~~~~~~~l~~~ 311 (499)
+-|..+|-.++..
T Consensus 16 P~di~~Wl~li~~ 28 (321)
T PF08424_consen 16 PHDIEAWLELIEF 28 (321)
T ss_pred cccHHHHHHHHHH
Confidence 4567777666643
No 347
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=81.79 E-value=57 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 456 LSMKREAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 456 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
.|++.+|.+.+-.+.+.++.|...-...|.+
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp -------------------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 4777777777777767667776554444443
No 348
>PRK09687 putative lyase; Provisional
Probab=81.73 E-value=36 Score=29.90 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 300 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 300 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
++...-...+.++.+.++ ..++..+.+.+... + .....+.++...|+. +|...+..+.+
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344444555555555555 23444444433221 1 122344445555553 34444444443
No 349
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.62 E-value=3.5 Score=23.91 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=13.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh
Q 010853 202 LVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666666553
No 350
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=81.00 E-value=30 Score=28.57 Aligned_cols=161 Identities=12% Similarity=0.039 Sum_probs=83.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
+.+||-+.--+...|+++.|.+.|+...+.. +....+...-.-++.--|++.-|.+-+...-....-.|-...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4567777777888899999999999887654 22233322222234456788888777666555554444444444333
Q ss_pred HHHHhcCCHHHHHHHH-HHHhhCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHhcCCC------CCCHHHHHHHHHH
Q 010853 346 RGLFRLRRVEEAKEVF-NCMLGIGVVADSTTYAIV-IDGLCESNQLDEAKRFWDDIVWPSN------IHDNYVYAAMIKG 417 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~li~~ 417 (499)
. ..-++.+|..-+ ++... .|..-|... +..|...=.. +.+++.+..-.- ..-..+|--+..-
T Consensus 177 E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred H---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2 223455554433 33322 233333322 2222211111 222232221110 0112356666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 010853 418 LCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|+.++|..+|+-.+..+
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 777788888888887776553
No 351
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.90 E-value=12 Score=33.06 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
.+.|.+.|.+++|++.|....... +-+..++..-..+|.+...+..|+.-...++
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456777788888888887766642 2366777766777777777777766666554
No 352
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.88 E-value=65 Score=32.32 Aligned_cols=105 Identities=12% Similarity=0.029 Sum_probs=68.2
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSV-NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
=++-+.+.+.+++|+++.+.....-.. .-.......|..+.-.|++++|-...-.|... +..-|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 345566778888888887776543221 12345677888888889999988888888765 6677777777776666
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
+......++ .......+...|..++..+..
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 654433332 111112356677777777766
No 353
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.49 E-value=66 Score=32.20 Aligned_cols=167 Identities=17% Similarity=0.094 Sum_probs=100.4
Q ss_pred hhHHHHH-HhcCChHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHh
Q 010853 20 ASLTSAL-AITGEMDVAYKVFDEMRHCGVLPNSL-----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 93 (499)
Q Consensus 20 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 93 (499)
..+..+| -...+++.|...+++....--+++-. ....+++.+.+.+... |...+.+.++..... +..+-...
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~-~~~~w~~~ 140 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY-GHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc-CchhHHHH
Confidence 3345555 58899999999999876543233222 2234566777766666 988888888776552 22223334
Q ss_pred HHHH-HHHHHcCCCHhHHHHHHHhccCCC---CCCchhhHHHHHHHHH--hcCChhhHHHHHHHHHhcCC---------C
Q 010853 94 FANL-VDSLCREGYVNEVFRIAEDMPQGK---SVNEEFACGHMIDSLC--RSGRNHGASRVVYVMRKRGL---------T 158 (499)
Q Consensus 94 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~g~---------~ 158 (499)
|.-+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..+.+.+.++.+..... .
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 4444 333334489999999988865432 2244445555555443 44656777777777644321 2
Q ss_pred CChhhHHHHHHHHH--ccCChhHHHHHHHHHH
Q 010853 159 PSLVSYNSIVHGLC--KHGGCMRAYQLLEEGI 188 (499)
Q Consensus 159 p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 188 (499)
|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556777776655 4677777776666554
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.08 E-value=8.2 Score=25.73 Aligned_cols=46 Identities=9% Similarity=0.069 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCChHHHHHH
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNI--VCYNVVIDGACKLSMKREAYQI 465 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~ 465 (499)
...+.++|+..+....+.-..+.. .++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666654333221 3556666667777776666554
No 355
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.93 E-value=93 Score=32.99 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=92.0
Q ss_pred HHhcCChHHHHHHHHHHHhC-----------------------CCCCC-----hhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010853 26 LAITGEMDVAYKVFDEMRHC-----------------------GVLPN-----SLTYSVLVRGVLRTRDVERANVLMFKL 77 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 77 (499)
|...|+.-+|+..|.+.... |-.|. ..-|-.+++.+-+.+..+.+.++....
T Consensus 930 yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~A 1009 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKA 1009 (1480)
T ss_pred eecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 36778888888888776531 21121 223556777888888888888887777
Q ss_pred HHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhh------------H
Q 010853 78 WERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG------------A 145 (499)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------------A 145 (499)
++..+.+. +--..+++.+.+.....|.+.+|...+-...... ........++..+..+|+++. .
T Consensus 1010 Ie~l~dd~--ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdse--rrrdcLRqlvivLfecg~l~~L~~fpfigl~~ev 1085 (1480)
T KOG4521|consen 1010 IENLPDDN--PSVALISTTVFNHHLDLGHWFQAYKAILRNPDSE--RRRDCLRQLVIVLFECGELEALATFPFIGLEQEV 1085 (1480)
T ss_pred HHhCCCcc--hhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHhccchHHHhhCCccchHHHH
Confidence 77766542 2223456677777788888888877765544321 112334456666666666533 2
Q ss_pred HH-HHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHH
Q 010853 146 SR-VVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLL 184 (499)
Q Consensus 146 ~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (499)
.. +++..-+....-....|+.|-..+...+++.+|-.++
T Consensus 1086 e~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1086 EDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 22 2222222222223445666666677777777766553
No 356
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.42 E-value=11 Score=26.47 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=28.9
Q ss_pred HhccCCHHHHHHHHHHHHHHhhhccCCc---cCHHhHHHHHHHHHcCCCHhHHHHHHHhc
Q 010853 61 VLRTRDVERANVLMFKLWERMKEEEDLS---VNNAAFANLVDSLCREGYVNEVFRIAEDM 117 (499)
Q Consensus 61 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 117 (499)
..+.|++..|.+.+.+.++......... .-....-.+.......|+.++|...+++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3567888888777777776554431111 01111222333444455555555555543
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.01 E-value=8.7 Score=25.59 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=31.6
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDN--YVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
...+.+.|...|..+.+....+.. .++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888777655443322 15667778888888888777653
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=77.91 E-value=57 Score=31.51 Aligned_cols=101 Identities=8% Similarity=0.012 Sum_probs=61.3
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
+...|+...|...+.........-.....-.|.+...+.|-...|..++.+..... ...+.++-.+.+++....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 33457777777777665543211122334455666666677777777776665443 22444667777888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHH
Q 010853 428 VHFLYELVDSGVTPNIVCYNVVI 450 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~ 450 (499)
++.|++..+.... +...-+.|.
T Consensus 696 ~~~~~~a~~~~~~-~~~~~~~l~ 717 (886)
T KOG4507|consen 696 LEAFRQALKLTTK-CPECENSLK 717 (886)
T ss_pred HHHHHHHHhcCCC-ChhhHHHHH
Confidence 8888888776432 344444433
No 359
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.89 E-value=75 Score=31.33 Aligned_cols=78 Identities=9% Similarity=0.034 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc----CChhhHHHHHHHHhcCCCCCCHHHHHHHHHH----HHhcCCH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES----NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG----LCRSGKI 424 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~ 424 (499)
+.+.+...+......| +......+-..|... .+++.|...+......+ ....|| +... ..... +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-h
Confidence 3445555555555444 333334444333322 24555666665555443 222222 1111 11223 6
Q ss_pred HHHHHHHHHHHHcC
Q 010853 425 HEAVHFLYELVDSG 438 (499)
Q Consensus 425 ~~a~~~~~~~~~~~ 438 (499)
..|.+++++....+
T Consensus 526 ~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 526 HLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHhcC
Confidence 67777777776643
No 360
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.74 E-value=49 Score=28.62 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=9.9
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 010853 133 IDSLCRSGRNHGASRVVYVMR 153 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~ 153 (499)
|-.|.+.+++..+.++-....
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334455555555544444433
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.74 E-value=4.1 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=16.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 451 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
-++.+.|++++|.+..+.+.+ ++|+..-...|-
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 345555555555555555555 455544444433
No 362
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=76.60 E-value=60 Score=29.57 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=25.8
Q ss_pred cCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHH
Q 010853 64 TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 112 (499)
Q Consensus 64 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 112 (499)
.++.+.|.+-+..+-.+.+...+...+...+..++..|...++|+.--+
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne 73 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNE 73 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4455555544444444444444455555566666666666666655433
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.78 E-value=18 Score=31.06 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHH
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 113 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 113 (499)
.+..-|.+.|++++|..++..+......++-..+...+...+..++.+.|+.+..+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3555666677777777776666555555544555555555666666666666655544
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.60 E-value=77 Score=29.80 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHH
Q 010853 58 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC 137 (499)
Q Consensus 58 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 137 (499)
|.--+..|+...|-+-+..++...+. .|+.... ........|+++.+...+......-. ....+...+++..-
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~----~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~-s~~~~~~~~~r~~~ 368 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQ----DPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIG-TTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCC----CchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhc-CCchHHHHHHHhhh
Confidence 34445566666665544444443322 2332222 22234456777777776665543321 22345566677777
Q ss_pred hcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC
Q 010853 138 RSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF 190 (499)
Q Consensus 138 ~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 190 (499)
+.|+++.|..+-+.|....++ ++..........-..|-++++.-.|++....
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred chhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 777777777777777766554 4444333333333455567777777666543
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.65 E-value=32 Score=25.51 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.+-+..+...++.|++.+...-++++.+.+++..|.++|+-++.
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344444455555666666666666666666666666655544
No 366
>PRK09687 putative lyase; Provisional
Probab=72.50 E-value=67 Score=28.22 Aligned_cols=137 Identities=16% Similarity=0.106 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHhHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-RVEEAKEVFNCMLGIGVVADSTTYAIV 379 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (499)
+...-...+.++.+.++ .+++..+...+.. ++...-...+.++.+.+ +.+.+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 44444455555555554 3445555554432 23333333444444432 13344444444443 3355555556
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
+.++.+.|+......+.+.+ +.+ + .....+.++...|.. +|...+.++.+. .||...-...+.+|.
T Consensus 213 ~~aLg~~~~~~av~~Li~~L-~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKEL-KKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCChhHHHHHHHHH-cCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66666666643333333332 221 1 233456666666664 566666666654 335555555555543
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.60 E-value=9 Score=19.14 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 010853 447 NVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
..+...+...|++++|...++...
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444444455555554444443
No 368
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.38 E-value=92 Score=29.32 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=44.4
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHH
Q 010853 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 215 (499)
+...|+++.+.+.+....+. +.....+...+++...+.|+++.|..+-+-|....+. ++.......-..-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 34556666666666544432 1223445556666666666666666666666554443 222222222222334556666
Q ss_pred HHHHHHHH
Q 010853 216 RKVLQFML 223 (499)
Q Consensus 216 ~~~~~~~~ 223 (499)
.-.++++.
T Consensus 411 ~~~wk~~~ 418 (831)
T PRK15180 411 YHYWKRVL 418 (831)
T ss_pred HHHHHHHh
Confidence 66666654
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.06 E-value=96 Score=30.12 Aligned_cols=163 Identities=10% Similarity=-0.039 Sum_probs=99.6
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 323 NLLYQVMPQRGYSPGIVTYNAVLRGLFRL--RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+.++--|....-.|+..+..+++.-.... ...+-+-.++..|... +.|-..+.|...-.+...|+...|...+..+.
T Consensus 556 ~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~ 634 (886)
T KOG4507|consen 556 KELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRAL 634 (886)
T ss_pred HHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHh
Confidence 33333343444456666655544322221 1234455555555432 24443344433333445789999999988876
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHh
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAV 479 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ 479 (499)
...+.-.......|.....+.|-..+|-.++.+..... ...+-++-.+.+++....+.+.|++.|+.+.+. .| +..
T Consensus 635 ~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~--~~~~~~ 711 (886)
T KOG4507|consen 635 NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL--TTKCPE 711 (886)
T ss_pred ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc--CCCChh
Confidence 44333333345567777778888888999988887765 336678888889999999999999999998774 33 344
Q ss_pred HHHHHHHHhc
Q 010853 480 TWRILDKLHG 489 (499)
Q Consensus 480 ~~~~l~~~~~ 489 (499)
.-+.|...-|
T Consensus 712 ~~~~l~~i~c 721 (886)
T KOG4507|consen 712 CENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHH
Confidence 4455544433
No 370
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.76 E-value=35 Score=24.15 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=20.8
Q ss_pred HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 382 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+...|++++|..+.+.. ..||...|-+|- -.+.|-.++...-+.+|-..
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 344455555555444433 244444443332 22334434444444444433
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.69 E-value=15 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=13.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
---.+|.+|...|++++|.+.++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555666666666666555554
No 372
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.63 E-value=56 Score=26.56 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=49.7
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
...+..++++++|...++........-+ ..+--.|.+.....|.+|+|+..++...+.+.. ......-...+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3455666777777777665542211100 111223445566667777777777655443221 112233345566777
Q ss_pred ChHHHHHHHHHHHHCC
Q 010853 458 MKREAYQILREMRKNG 473 (499)
Q Consensus 458 ~~~~a~~~~~~m~~~g 473 (499)
+-++|..-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 7777777777776654
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.04 E-value=36 Score=24.07 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=22.5
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 296 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 296 (499)
.+...|++++|..+.+.+ +.||...|..+.. .+.|..++...-+..+..++
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344445555554444332 2445444443322 34444444444444444433
No 374
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=69.42 E-value=76 Score=27.54 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=14.5
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHH
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVV 149 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 149 (499)
-++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34455566666666777666666554
No 375
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.16 E-value=46 Score=24.93 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHH
Q 010853 144 GASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 144 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
.+.++|..|...|+--. ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55666666655544322 23455555555556666666666553
No 376
>PRK11619 lytic murein transglycosylase; Provisional
Probab=69.07 E-value=1.3e+02 Score=30.26 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=76.7
Q ss_pred hHHHHH--HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 21 SLTSAL--AITGEMDVAYKVFDEMRHCGVLPNSL-TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 21 ~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
.|.... .+.|++..+.++...+... +..+. .|..+... .....+++... ++++.+ +.......-...
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~l~d~--pL~~yl~y~~L~~~-l~~~~~~ev~~----Fl~~~~---~~P~~~~Lr~~~ 105 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPTLKDY--PLYPYLEYRQLTQD-LMNQPAVQVTN----FIRANP---TLPPARSLQSRF 105 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhccCC--CcHhHHHHHHHHhc-cccCCHHHHHH----HHHHCC---CCchHHHHHHHH
Confidence 344444 7889998888888877542 11111 12222221 12224444433 333322 333333333345
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
+..+.+.+++.+.++.+..- +.+.........+....|+.++|......+-..|.. .+..++.++..+.+.|..
T Consensus 106 l~~La~~~~w~~~~~~~~~~-----p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 106 VNELARREDWRGLLAFSPEK-----PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HHHHHHccCHHHHHHhcCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCC
Confidence 55666777777766632121 234444455667777788877777777666655533 566777777777765544
Q ss_pred h
Q 010853 178 M 178 (499)
Q Consensus 178 ~ 178 (499)
.
T Consensus 180 t 180 (644)
T PRK11619 180 D 180 (644)
T ss_pred C
Confidence 3
No 377
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.38 E-value=1.4e+02 Score=30.06 Aligned_cols=224 Identities=12% Similarity=0.035 Sum_probs=95.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC-------hhHHHHHHHHHHhCCCCCCccc
Q 010853 126 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG-------CMRAYQLLEEGIQFGYLPSEHT 198 (499)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 198 (499)
...|. +|-.|.|+|++++|.++.....+. .......+...+..|....+ -+....-|++........|+
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp-- 187 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP-- 187 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H--
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh--
Confidence 34554 677788999999999999555543 34456677788888876532 23455555555543322232
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCchh--hHHHHHHHHhcc---------CChHHHHHHHHHHHhcCCCCCH
Q 010853 199 YKVLVEGLCGESDL-EKARKVLQFMLSKKDVDRTR--ICNIYLRALCLI---------KNPTELLNVLVFMLQTQCQPDV 266 (499)
Q Consensus 199 ~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~ 266 (499)
|...+-......+. ..-. ..+..+.. .|-.+...-... -..+...+.+...-+....++
T Consensus 188 yK~AvY~ilg~cD~~~~~~--------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~~- 258 (613)
T PF04097_consen 188 YKRAVYKILGRCDLSRRHL--------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNAG- 258 (613)
T ss_dssp HHHHHHHHHHT--CCC-S---------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT--
T ss_pred HHHHHHHHHhcCCccccch--------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhcccc-
Confidence 32222111111111 0000 00000111 111111110000 012223333333333333331
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 346 (499)
...-.....+.-.|+++.|.+.+-.... ...+.+.+...+..|.-..-.+... ...+....-.|...-+..+|.
T Consensus 259 ~~p~~Yf~~LlLtgqFE~AI~~L~~~~~---~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 259 SNPLLYFQVLLLTGQFEAAIEFLYRNEF---NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp -----HHHHHHHTT-HHHHHHHHHT--T----HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHhhcc---CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 1112234555678999999999887221 1566777776666554322222211 121211111122256778888
Q ss_pred HHHh---cCCHHHHHHHHHHHhhCC
Q 010853 347 GLFR---LRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 347 ~~~~---~~~~~~a~~~~~~~~~~~ 368 (499)
.|.+ ..+...|.+.+--+....
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHHHhccCHHHHHHHHHHHHHcC
Confidence 8876 457888999888777653
No 378
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.37 E-value=22 Score=21.04 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666677777777777777777766666554
No 379
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=68.24 E-value=97 Score=28.34 Aligned_cols=101 Identities=10% Similarity=-0.010 Sum_probs=60.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV------------INGFCKMGRIEEALKVLNDMVAGKFCAPD 301 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (499)
-..+....-..|+.++|..++.+. .+.||.++ ++.|...+++-.|.-+-+++...-.-.|+
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el-------~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~ 206 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCEL-------QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPD 206 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhc-------chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCcc
Confidence 344455556677777777776544 23344332 45666777777777776666655544555
Q ss_pred H-----HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhH
Q 010853 302 A-----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY 341 (499)
Q Consensus 302 ~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 341 (499)
. .-|..++......+.+-.+.+.|........+..|+.-|
T Consensus 207 ~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw 251 (439)
T KOG1498|consen 207 VQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKW 251 (439)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhh
Confidence 3 346777777777777777777776654433344433333
No 380
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.96 E-value=1.1e+02 Score=28.93 Aligned_cols=432 Identities=12% Similarity=0.023 Sum_probs=201.0
Q ss_pred HhcC--ChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHH-hccCCHHHHHHHHHHHHHHhhhccCC-ccCHHhHHHHHHH
Q 010853 27 AITG--EMDVAYKVFDEMRHCGVLPNS--LTYSVLVRGV-LRTRDVERANVLMFKLWERMKEEEDL-SVNNAAFANLVDS 100 (499)
Q Consensus 27 ~~~~--~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~ 100 (499)
..+| +...+++.++..-...++--+ .+--.+...+ .-..+++-|..-+++.|..+..-+.. .....+++.|...
T Consensus 18 rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~l 97 (629)
T KOG2300|consen 18 RTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHL 97 (629)
T ss_pred hhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHH
Confidence 4445 677788888877765322111 2222233332 33667888888888888776554333 3334466667777
Q ss_pred HHcCC-CHhHHHHHHHhccCCCCC-C--chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHH-----
Q 010853 101 LCREG-YVNEVFRIAEDMPQGKSV-N--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL----- 171 (499)
Q Consensus 101 ~~~~~-~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~----- 171 (499)
++... .+..+..++.+..+.... | .-.....|+....-..++..|.+++.---+. -.|-...|..++-.+
T Consensus 98 h~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~ftls~~~l 176 (629)
T KOG2300|consen 98 HHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLFTLSMLML 176 (629)
T ss_pred HHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHHHHHHHHH
Confidence 77666 777777777765443211 1 1112234556667778888888774321111 111222333222211
Q ss_pred -Hcc---CChhHHHHHHHHHHhCCCCCCccc--------HHHHHHHHhcCCCHHHHHHHHHHHHhC---CCCCchhhHHH
Q 010853 172 -CKH---GGCMRAYQLLEEGIQFGYLPSEHT--------YKVLVEGLCGESDLEKARKVLQFMLSK---KDVDRTRICNI 236 (499)
Q Consensus 172 -~~~---~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 236 (499)
... .++..+.+.-.+|.+. ..+|..- .+.-+..|...|+...+...++++... ...++ ..+..
T Consensus 177 l~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~-~~h~e 254 (629)
T KOG2300|consen 177 LIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSS-RGHDE 254 (629)
T ss_pred HHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCC-CCccc
Confidence 112 2334444444455443 3344321 112233345566666666666665432 11111 00000
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCC---CCHhhHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCCH-----HHHH
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQ---PDVITLNTVINGFCKM--GRIEEALKVLNDMVAGKFCAPDA-----VTFT 306 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~-----~~~~ 306 (499)
-+ .|.+ -...+..+.+..+. --......+..+|.+. +-.|+++...++.++.....|-. .+..
T Consensus 255 ~i-----lgsp--s~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 255 KI-----LGSP--SPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred cc-----cCCC--ChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 00 0000 00001100000000 0000011112222211 12234444444444332211111 1122
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhccCCCCCchh-------hHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCcCHHhH--
Q 010853 307 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV-------TYNAVLR-GLFRLRRVEEAKEVFNCMLGIGVVADSTTY-- 376 (499)
Q Consensus 307 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-- 376 (499)
.++.+=.-.|++.+|++-+.++..-..-.|.+. ....++. .|+..+.++.|+.-|....+.--..|...+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~n 407 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCN 407 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 223333457888888887777544333344421 1222222 344567889999888877654323333332
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CC----CChhh
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNY-----VYAAMIKGLCRSGKIHEAVHFLYELVDSG-VT----PNIVC 445 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-----~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~----~~~~~ 445 (499)
..+.-.|.+.|+.+.-.++++.+.-.+-.+ ... .+-...-.....+++.+|..++.+-.+.. -. ...-.
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~ 487 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACS 487 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 345567888888888888887764221111 110 11111112245789999999988876532 01 01111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 010853 446 YNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
...|...+...|+..++.....-
T Consensus 488 LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 488 LVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred HHHHHHHHHHhcchHHHHhccch
Confidence 22233345567887777766554
No 381
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.90 E-value=1.7e+02 Score=30.56 Aligned_cols=117 Identities=12% Similarity=0.132 Sum_probs=64.2
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCC---CCchhhHHHHHHHHhccCCh--HHHHHHHHHHHhcCCCCCHhhHHH
Q 010853 197 HTYKVLVEGLCGESDLEKARKVLQFMLSKKD---VDRTRICNIYLRALCLIKNP--TELLNVLVFMLQTQCQPDVITLNT 271 (499)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 271 (499)
.-|..|+..|...|+.++|.+++.+...... ......+..++.-+...+.. +-++++-+...+....-....+..
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 3477888888888888888888888765321 11122333344444444444 444444444443322111111111
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc
Q 010853 272 ------------VINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 314 (499)
Q Consensus 272 ------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (499)
.+-.|......+.+...++.+..... .++....+.++..|..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~-~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR-LTSTLLHTVLLKLYLE 638 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc-ccchHHHHHHHHHHHH
Confidence 22335556677777777877776554 4566666666666653
No 382
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=66.49 E-value=1e+02 Score=28.00 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---CHHhHHHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA---DSTTYAIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
..++..+...+.+.|.++.|...+..+...+... .+.+.-.-+......|+..+|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666665533111 222333334444555666666666655543
No 383
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.48 E-value=47 Score=24.05 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355566666666666666666666554
No 384
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=66.46 E-value=98 Score=27.71 Aligned_cols=57 Identities=23% Similarity=0.189 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC---CCCcCHHhHH--HHHHHHHhcCChhhHHHHHHHHhc
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGI---GVVADSTTYA--IVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
+...-+.++.++|.++++++.+. --.|+...|. ...+++...||..++++.+++..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33444556777777777776542 1134444443 334555566777777777766654
No 385
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.43 E-value=1.2e+02 Score=28.76 Aligned_cols=38 Identities=13% Similarity=0.005 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
.|...|++-.|.+.|.+.... +..++..|-.+..+|..
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 455667777777777776654 34466777777777754
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=66.02 E-value=49 Score=29.25 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
.+.-+-.+.|+..+|.+.|+++.+......-...-..++.++....-+.+...++.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455567888888888888876531111112233466666666666666555544
No 387
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=65.45 E-value=1.1e+02 Score=27.72 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=15.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
..+..+|..+.|..+++-+.+.++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHc
Confidence 344556777777777777666543
No 388
>PRK10941 hypothetical protein; Provisional
Probab=65.29 E-value=94 Score=27.10 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 346 (499)
+.+-.+|.+.++++.|+++.+.+..-. +.+..-+.--.-.|.+.|.+..|..-++..++...-.|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 445556677777777777777776643 444555555566677777777777766666655544555544444443
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.88 E-value=95 Score=27.02 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=60.3
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHh-------HHHHHHHHHhcCChhhHHHHHHHHh----cCCCCCCHHHHHHHH
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVADSTT-------YAIVIDGLCESNQLDEAKRFWDDIV----WPSNIHDNYVYAAMI 415 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li 415 (499)
-..+.+++++|+..+.++...|+..+..+ ...+...|...|++....+...... .-.-........+|+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 34455666666666666666665554433 3345556666666554444332221 101111223444455
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 416 KGLCRS-GKIHEAVHFLYELVDSGVTPNI-----VCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 416 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
..+-.. ..++..+.+....++-..+-+. ..=..++..+.+.|++.+|+.+...+
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 444333 2344444444443321111111 12234677788899999988766544
No 390
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.44 E-value=39 Score=23.63 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=9.8
Q ss_pred HHHccCCHHHHHHHHHHHh
Q 010853 311 GLLNVGRIQEALNLLYQVM 329 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~ 329 (499)
.....|++++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444555555555555544
No 391
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.60 E-value=58 Score=31.98 Aligned_cols=90 Identities=12% Similarity=0.155 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC--CCCcCHHhHHHHHHHHHhcCChh------hHHHHHHHHhcCCCCCCHHHHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLD------EAKRFWDDIVWPSNIHDNYVYAAM 414 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 414 (499)
.++.+|...|++.++..+++..... |-+.-...+|..++...+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888899999999999998888754 22333456777788888888754 3445555443 44566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~ 435 (499)
+.+-..--+..-..-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 665544323333333444443
No 392
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.49 E-value=1.9e+02 Score=30.12 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=15.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWE 79 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 79 (499)
|..|+..|...|..++|.+++.++..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55666666666666666665555444
No 393
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.40 E-value=91 Score=26.30 Aligned_cols=137 Identities=14% Similarity=0.134 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
.....-+..|.+.-++..|-...+++.+ ...+-.++++ |.+..+..--.++.+-....++..+......++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHHc------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDS------------GVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
...|+...|+.-++.-... --.|.+.....++..|. .+++++|.+++.++.+.|+.|....-+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 394
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=63.36 E-value=8.6 Score=28.72 Aligned_cols=29 Identities=14% Similarity=0.437 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 452 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (499)
|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444566667777777766655 55555544
No 395
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=63.31 E-value=64 Score=25.93 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhCCCCcC--HHhH-----HHHHHHHHhcCChhhHHHHHHHHhc
Q 010853 354 VEEAKEVFNCMLGIGVVAD--STTY-----AIVIDGLCESNQLDEAKRFWDDIVW 401 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~ 401 (499)
.+.|..+|+.+.+.--.|. .... ...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 5666667666665432221 1111 1223345566666666666665543
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.08 E-value=83 Score=25.70 Aligned_cols=35 Identities=29% Similarity=0.288 Sum_probs=26.5
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 440 TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
.|+..+|..++.++...|+.++|.++.+++.. +-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 67777777777778888888888887777766 455
No 397
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.40 E-value=73 Score=24.54 Aligned_cols=80 Identities=13% Similarity=0.203 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSN-----IHDNYVYAAMIKGLCRSGK-IHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
.+.++......+++....++++.+..-.. ..+...|.+++.+.....- ---+..+|.-|.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34455544555555555555555521100 1122344444444433322 12233444444444444555555555
Q ss_pred HHHHHh
Q 010853 450 IDGACK 455 (499)
Q Consensus 450 ~~~~~~ 455 (499)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 554443
No 398
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=59.27 E-value=1.7e+02 Score=28.06 Aligned_cols=180 Identities=11% Similarity=0.006 Sum_probs=117.8
Q ss_pred CCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 010853 228 VDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT 307 (499)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (499)
+.+......++..+.....++-++.+..+|+..|- +...|..++.+|... ..+.-..+++++.+-. -.|...-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHH
Confidence 34445667778888888888888888889888763 667788899999888 6677888888777654 234444445
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCc------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCcCHHhHHHHH
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPG------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-GVVADSTTYAIVI 380 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 380 (499)
+...|-+ ++.+.+...|.+++... -|. ...|..+... -..+.+....+..++... |...-...+.-+-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5555544 77777877777754221 221 1234443321 135677777777777643 3333445556666
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
.-|....++++|.+++..+.+.+.+ |...-..++..+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 7788899999999999988766543 554444555443
No 399
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=59.16 E-value=1e+02 Score=27.57 Aligned_cols=107 Identities=9% Similarity=0.070 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCC---CCCCchhhH--HHHHHHHHhcCChhhH
Q 010853 71 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG---KSVNEEFAC--GHMIDSLCRSGRNHGA 145 (499)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~A 145 (499)
.++|..++..... .+.|-.. ...++...-+.++.++|++.++++.+. .-.|+...| ..+.+++...|+..++
T Consensus 58 l~lY~NFvsefe~--kINplsl-vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~ 134 (380)
T KOG2908|consen 58 LQLYLNFVSEFET--KINPLSL-VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEI 134 (380)
T ss_pred HHHHHHHHHHHhh--ccChHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHH
Confidence 3444444444332 3333322 223444445555777777777665432 122444443 3445566677888888
Q ss_pred HHHHHHHHh-----cCCCCChh-hHHHHHHHHH-ccCChhHH
Q 010853 146 SRVVYVMRK-----RGLTPSLV-SYNSIVHGLC-KHGGCMRA 180 (499)
Q Consensus 146 ~~~~~~~~~-----~g~~p~~~-~~~~l~~~~~-~~~~~~~a 180 (499)
.+.+++..+ .|++|++. .|..+-.-|. +.|++...
T Consensus 135 kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 135 KKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHH
Confidence 888777766 46666554 3444444443 34555443
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.13 E-value=49 Score=25.53 Aligned_cols=27 Identities=26% Similarity=0.181 Sum_probs=11.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCC
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYL 193 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~ 193 (499)
++..+...++.-.|.++|+.+.+.+..
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~ 52 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPG 52 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCC
Confidence 333444444444445555554444433
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.75 E-value=27 Score=22.14 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|-.-.-.+|.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333445566777777777777777766654
No 402
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.43 E-value=1.2e+02 Score=25.85 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=74.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHh-HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTT-YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIH 425 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 425 (499)
|.....++.|...|.+.+.. .|+..+ |+.=+.++.+..+++.+..--.+.++ +.||.. ..-.+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 55566788888877776664 466544 44455677778888888777766654 344444 3334555666677888
Q ss_pred HHHHHHHHHHH----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 426 EAVHFLYELVD----SGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 426 ~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
+|+..+++..+ ..+.+-......|..+=-+.=...+..++.++..
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 89888888754 3344445566666655444444455666666553
No 403
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.93 E-value=50 Score=26.98 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=13.0
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCML 365 (499)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (499)
|+...|..++.++...|+.++|.++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 404
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=57.09 E-value=58 Score=25.15 Aligned_cols=59 Identities=19% Similarity=0.067 Sum_probs=37.1
Q ss_pred hccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
++..|++++.. -..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 12 lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 12 LKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 44566665543 335566666666667788888888777666666665555666665554
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.05 E-value=1.6e+02 Score=27.18 Aligned_cols=17 Identities=6% Similarity=-0.017 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHHhhC
Q 010853 351 LRRVEEAKEVFNCMLGI 367 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~ 367 (499)
.+++..++++++++...
T Consensus 317 ~sky~~cl~~L~~~k~~ 333 (466)
T KOG0686|consen 317 SSKYASCLELLREIKPR 333 (466)
T ss_pred hhhHHHHHHHHHHhccc
Confidence 46788888888887653
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=57.00 E-value=25 Score=30.75 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
|+..|....+.||+++|+.++++....|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666676666666666655333343
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=55.43 E-value=78 Score=31.20 Aligned_cols=91 Identities=9% Similarity=0.156 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCChhhHHHH
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWP--SNIHDNYVYAAMIKGLCRSGKIH------EAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
+|+.+|...|++.++.++++.+... +-+.-...+|..|+.+.+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7899999999999999999998743 22334457888999999999764 3444555444 45577888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 010853 450 IDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+.+-...-+..-..-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8776654444444555555543
No 408
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=55.15 E-value=1.6e+02 Score=26.57 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 445 CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 445 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
.|.++++.....|.+++++.+|++++..|..|=...-..++..+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34444444455555555555555555555555444444444333
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.13 E-value=67 Score=22.10 Aligned_cols=65 Identities=12% Similarity=0.145 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 357 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .|.. .|..++.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhh
Confidence 3455555555553 222223333222234466666666666665 3322 355666666665554433
No 410
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=55.12 E-value=1.5e+02 Score=26.33 Aligned_cols=58 Identities=7% Similarity=-0.110 Sum_probs=35.8
Q ss_pred CcccccCCCCChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 010853 8 PTTGFYSPFPPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 66 (499)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 66 (499)
..+.+.++.++...-..-+..++++.+.++-++...... +--........+++.+.|.
T Consensus 91 g~T~L~~p~ad~~~~~~~~~~~~~~~~Ll~~~E~sl~~~-pfWLDgq~~~~qal~~lG~ 148 (301)
T TIGR03362 91 GRTRLAPPPADRVADYQELLAQADWAALLQRVEQSLSLA-PFWLDGQRLSAQALERLGY 148 (301)
T ss_pred CCccCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-chhhHHHHHHHHHHHHCCC
Confidence 334455555555555555567788888888888887752 2233334456677777774
No 411
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=54.99 E-value=1.5e+02 Score=26.16 Aligned_cols=139 Identities=12% Similarity=0.152 Sum_probs=72.2
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
.+.++..+.+.+--++.+++| +|+..+-......+...|--+-..-.-.++.. ..-...-..|..-..
T Consensus 199 i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~elvey~~~q~~~----~a~kElq~~L~~q~s 266 (412)
T KOG2297|consen 199 INDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKELVEYHRNQQSE----GARKELQKELQEQVS 266 (412)
T ss_pred HHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc
Confidence 344555555544444444444 66666666666666555543322211111110 001111233444455
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCch---hhHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGI---VTYNAVLRGLFRLRRVE-EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
+...+++....+.+.|+..+++... ..|..+|++---.+.-+ -|.+.++++ .+|..|+.+++..|+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~s 337 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQS 337 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChH
Confidence 5666777777777777666654332 35777776654432221 233333333 4578888888888887
Q ss_pred hhHH
Q 010853 390 DEAK 393 (499)
Q Consensus 390 ~~a~ 393 (499)
+...
T Consensus 338 EL~L 341 (412)
T KOG2297|consen 338 ELEL 341 (412)
T ss_pred HHHH
Confidence 6543
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.87 E-value=1e+02 Score=26.42 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhc----C-CCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 010853 130 GHMIDSLCRSGRNHGASRVVYVMRKR----G-LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG 187 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~----g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 187 (499)
..+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+..+.+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34666777888888888888776422 3 2344556667777888888888777665554
No 413
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.86 E-value=1.5e+02 Score=25.99 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=61.0
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhcc---CCCCCchhhHHH-HHHHHHhcCCHHHHHHHHHHH
Q 010853 289 LNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ---RGYSPGIVTYNA-VLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~ 364 (499)
+++....++-......+..+...|++.++.+.+.++..+.|.. .|.+.|+...-. +.-.|....-.++-++..+.|
T Consensus 102 i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~ 181 (412)
T COG5187 102 IREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDI 181 (412)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 3444433322334567777888888888888888877776543 244444322111 111233333456777777888
Q ss_pred hhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 365 LGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 365 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
.+.|-..+. .+|..+. +....++.+|-.++-+..
T Consensus 182 iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 182 IEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHh
Confidence 877754332 2333332 223456777777776654
No 414
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.79 E-value=1.8e+02 Score=26.86 Aligned_cols=56 Identities=20% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHH-hcCChhhHHHHHHHHh
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQLDEAKRFWDDIV 400 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 400 (499)
|..+.+.|.+..|.++.+-+......-|+......|+.|+ ++++++-..++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3345566666666666666666553335555555555543 4555555555555543
No 415
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.05 E-value=2.5e+02 Score=28.45 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHH----------HHHHHHHHHHc
Q 010853 248 TELLNVLVFMLQTQCQPD---VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV----------TFTTIIFGLLN 314 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~ 314 (499)
++....+.+|...--.|+ ..+...++-.|....+++...++.+.+++ -||.. .|...++--.+
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~----iP~t~~vve~~nv~f~YaFALNRRNr 255 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR----IPDTLKVVETHNVRFHYAFALNRRNR 255 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh----CcchhhhhccCceEEEeeehhcccCC
Confidence 445556666665533333 34455666677777888888888888876 34321 23333444445
Q ss_pred cCCHHHHHHHHHHHhccCC-CCCchhhHHHHH-------HHHHhcCCHHHHHHHHHHHhhCCCCcCHH
Q 010853 315 VGRIQEALNLLYQVMPQRG-YSPGIVTYNAVL-------RGLFRLRRVEEAKEVFNCMLGIGVVADST 374 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 374 (499)
-|+-++|+...-.+.+..| +.||..+...-| +.|...+..+.|.++|++.-+. .|+..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~ 321 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEY 321 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--Cchhh
Confidence 6778888887766655443 456654322111 1233445667788888877663 45444
No 416
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.73 E-value=31 Score=30.13 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=34.3
Q ss_pred CCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 440 TPNIV-CYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 440 ~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
.|+.. -|+..|....+.|+.++|+.+++++++.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34444 46799999999999999999999999999765444443
No 417
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=53.45 E-value=1.2e+02 Score=24.64 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+++..|.+.-++.+..++++.+.+.
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el 161 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHEL 161 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888877654
No 418
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=53.41 E-value=1.6e+02 Score=25.96 Aligned_cols=125 Identities=10% Similarity=0.016 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC-------ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----c
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-------QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----S 421 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 421 (499)
+..+|..+|....+.|..+...+...+...|.... +...|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 66777777777777664332222333333333321 2235677777665544 33334444444432 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------------ChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS---------------MKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
.+..+|...|.+..+.|. ......+. .+...| +...|...+......|..........+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 467788888888877764 22222222 333333 777888888888888777666666633
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.98 E-value=1.9e+02 Score=26.82 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHccCCHHHHHHHHHHHhccCCCCCchh--hHHHHHHHHH--hcCCHHHHHHHHHHHhhC
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQRGYSPGIV--TYNAVLRGLF--RLRRVEEAKEVFNCMLGI 367 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 367 (499)
..+.+.+++..|.+++.++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445677777777777775533 444433 3333333333 345667777777766554
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.03 E-value=2e+02 Score=26.72 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=8.3
Q ss_pred cCCHHHHHHHHHHH
Q 010853 315 VGRIQEALNLLYQV 328 (499)
Q Consensus 315 ~~~~~~a~~~~~~~ 328 (499)
.|+++.|...+.++
T Consensus 254 ~gryddAvarlYR~ 267 (379)
T PF09670_consen 254 QGRYDDAVARLYRA 267 (379)
T ss_pred cCCHHHHHHHHHHH
Confidence 56666666555554
No 421
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.69 E-value=1.1e+02 Score=23.37 Aligned_cols=67 Identities=10% Similarity=0.139 Sum_probs=29.3
Q ss_pred cCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 371 ADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPS-NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++..+--.+..++.+..+ ..+...+++++.+.. +.-......-|.-++.+.+++++++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444444445555554433 333444555554311 1111112222334455555555555555555544
No 422
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.53 E-value=74 Score=25.35 Aligned_cols=63 Identities=17% Similarity=0.068 Sum_probs=38.6
Q ss_pred HHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 327 QVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 327 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
+.++..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 334455665554332 445555555566677888888877776666666666666676666544
No 423
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=1.6e+02 Score=25.10 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=78.9
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCchh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHH-hHHHHHHHHHhcCC
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIV-TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST-TYAIVIDGLCESNQ 388 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 388 (499)
.|.....+..|+..|.+.+. +.|+.. -|..-+.++.+..+++.+..--....+. .||.. ....+..+......
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc
Confidence 46667788999998877654 356664 4455666788889999988877777764 45543 34445566777888
Q ss_pred hhhHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 389 LDEAKRFWDDIV----WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 389 ~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
++.|...+.+.. ...+.+....+..|..+--..=...+..++.++.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 999999998873 3444455556666666544444445555555544
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.94 E-value=1.1e+02 Score=24.48 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=21.5
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
++..+...++.-.|.++++.+.+.+..++..|....+..+...|
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33333334445555556655555554444444444444444444
No 425
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=49.86 E-value=1.7e+02 Score=25.36 Aligned_cols=147 Identities=14% Similarity=-0.004 Sum_probs=76.7
Q ss_pred HHHHhcCChHHHHHHHHH----HHhCCCCCChhhHHHHHHHHhccCCHH-HHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 24 SALAITGEMDVAYKVFDE----MRHCGVLPNSLTYSVLVRGVLRTRDVE-RANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
..+.+.|+...|-++--- ..+.+.+.+......++..+...+.-+ +-..+..+++.+-.......-++..+..+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 334777887766555444 444577777777677777776654332 334555666666632223344677888899
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM 178 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~ 178 (499)
..+.+.|++.+|...|-.-.. ++...+..++......|...++ +...-. .+-.|.-.++..
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~l~n~~ 158 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLCLGNLR 158 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHHTTBHH
T ss_pred HHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHHhcCHH
Confidence 999999999999877654322 3333332234333333333322 111112 223344567777
Q ss_pred HHHHHHHHHHh
Q 010853 179 RAYQLLEEGIQ 189 (499)
Q Consensus 179 ~a~~~~~~~~~ 189 (499)
.|...++...+
T Consensus 159 ~A~~~~~~f~~ 169 (260)
T PF04190_consen 159 DANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 426
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=48.96 E-value=2.5e+02 Score=26.91 Aligned_cols=244 Identities=11% Similarity=0.085 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC------ChHHHHHHHHHHHhcC-CCC-CHhhHHHHHHHHHhcCCH-
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK------NPTELLNVLVFMLQTQ-CQP-DVITLNTVINGFCKMGRI- 282 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~- 282 (499)
.+....+|+... ...++...|+.++..+...- .....+.+++.....+ ..+ ....|..+.-++......
T Consensus 298 ~s~~~~v~ee~v--~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 298 ESRCCAVYEEAV--KTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 344446776665 24555666666666554422 2344455555544432 222 344555555555555543
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC-H--HHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-V--EEAK 358 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~--~~a~ 358 (499)
+.|..+..+.. ..+...|-.-++...+. .+++--...+....+..-..+....|+... .++ . ..-.
T Consensus 376 ~~a~~l~~e~f-----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~ 445 (568)
T KOG2396|consen 376 EVAVKLTTELF-----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLD 445 (568)
T ss_pred HHHHHhhHHHh-----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHH
Confidence 33333333333 34555555544444422 122222111111121211122223333332 222 1 1222
Q ss_pred HHHHHHhhCCCCcCHHhH-HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 010853 359 EVFNCMLGIGVVADSTTY-AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS--GKIHEAVHFLYELV 435 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 435 (499)
.++......+ .|+..++ +.+++-+...|-.++|..++..+... ++|+...|..+|..-..+ -+..-+..+++.|.
T Consensus 446 ~Ii~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 446 LIISALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 3344444443 4444443 56777788888899999999888644 456777787777643221 23677788888877
Q ss_pred H-cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 436 D-SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 436 ~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
. .| .|+..|-..+.--...|..+.+-.++.++.+
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 5 45 4777887777766788888888888777654
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=48.63 E-value=28 Score=32.53 Aligned_cols=107 Identities=11% Similarity=0.030 Sum_probs=68.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV-IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
...+...++++.|..++.++++. .||...|... ..++.+.+++..|..=+..+++..+. -...|-.=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 34455677889999999998885 5655554333 36788888888888888777765422 11223333344555566
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
+.+|+..|+.... +.|+..-....+.-|-+.
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 6677777766655 477777777777666443
No 428
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.55 E-value=2.4e+02 Score=26.56 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
...|+.-|...|+..+|.+.++++--.-+ ....++.+++.+.-+.|+-...+.+++...+.|. .|-+.+-++|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45688889999999999999998753322 2455789999999999998888888888887754 466777777766
Q ss_pred cC--------ChHHHHHHHHHHHHC
Q 010853 456 LS--------MKREAYQILREMRKN 472 (499)
Q Consensus 456 ~g--------~~~~a~~~~~~m~~~ 472 (499)
.. +...|.+.|+...+.
T Consensus 587 V~dsl~DlsLDvPna~ekf~~~Ve~ 611 (645)
T KOG0403|consen 587 VYDSLPDLSLDVPNAYEKFERYVEE 611 (645)
T ss_pred hhccCcccccCCCcHHHHHHHHHHH
Confidence 43 234455566555443
No 429
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.29 E-value=96 Score=22.43 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=29.2
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCC--hhhHHHHHHHHHhcC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR--NHGASRVVYVMRKRG 156 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~g 156 (499)
.++..|...|+.++|...+.++.... -.......++..+...++ -+....++..+.+.+
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 35666677788888888777764321 111222333333333322 233455556666554
No 430
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=47.21 E-value=1.1e+02 Score=22.18 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=8.8
Q ss_pred HHHHHhcCChhhHHHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~ 399 (499)
+.-|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444445555555555443
No 431
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.17 E-value=2e+02 Score=25.21 Aligned_cols=146 Identities=11% Similarity=0.088 Sum_probs=82.7
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCcc
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYS-------VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 89 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 89 (499)
|.......-..+.+++++|+..+.++...|+..+..+.| .+...|...|++..-.+.....-+.|..- ..+-
T Consensus 4 ~~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f-tk~k 82 (421)
T COG5159 4 KSSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF-TKPK 82 (421)
T ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh-cchh
Confidence 344556666688999999999999999999877765544 47788888888776655544443333322 1111
Q ss_pred CHHhHHHHHHHHHcC-CCHhHHHHHHHhccCCCCC-----CchhhHHHHHHHHHhcCChhhHHHHHH----HHHhcCCCC
Q 010853 90 NNAAFANLVDSLCRE-GYVNEVFRIAEDMPQGKSV-----NEEFACGHMIDSLCRSGRNHGASRVVY----VMRKRGLTP 159 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~g~~p 159 (499)
.+....+++..+-.. ..++.-+++.....+-... .....-..++..+.+.|.+.+|+.+.. ++++.+-+|
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~ 162 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKI 162 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcc
Confidence 223334444443322 3344444444332211100 011122346777788888888876654 344444455
Q ss_pred Chhh
Q 010853 160 SLVS 163 (499)
Q Consensus 160 ~~~~ 163 (499)
+..+
T Consensus 163 ~Li~ 166 (421)
T COG5159 163 NLIT 166 (421)
T ss_pred ceee
Confidence 5444
No 432
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.71 E-value=1.3e+02 Score=26.53 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 358 KEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.++|+.+.+.++.|.-.++.-+.-.+...=.+..+..+|+.+.. |..-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45666666667777766666665556666666677777776653 2222555555554
No 433
>PRK11619 lytic murein transglycosylase; Provisional
Probab=46.69 E-value=3.3e+02 Score=27.63 Aligned_cols=116 Identities=16% Similarity=0.038 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCch---hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 010853 209 ESDLEKARKVLQFMLSKKDVDRT---RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 285 (499)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 285 (499)
..+.+.|...+..+......... .+...+.......+...++...+....... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 34556777777665433222111 123333333333322344444444433221 1333344444444566777777
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010853 286 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 328 (499)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 328 (499)
...+..|.... .....-.--+..++...|+.++|...|.+.
T Consensus 332 ~~~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665433 223333344555555567777777766654
No 434
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.45 E-value=4.1e+02 Score=28.72 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=64.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchh----hH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPD-AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV----TY 341 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~ 341 (499)
-|..+++.+-+.+..+.+.++-....+.-. ..|+ ..+++.+.+.....|.+.+|...+-+ .||.. +.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcL 1057 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHH
Confidence 356677777777777777776655544321 1122 45567777777888888888766544 23332 34
Q ss_pred HHHHHHHHhcCCHH------------HHHH-HHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHH
Q 010853 342 NAVLRGLFRLRRVE------------EAKE-VFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 395 (499)
Q Consensus 342 ~~ll~~~~~~~~~~------------~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 395 (499)
..++..++..|.++ +... +++..-+.........|..|-.-+...+++.+|-.+
T Consensus 1058 RqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 44555555555443 3333 222222222122233445444445666776665543
No 435
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.39 E-value=2.6e+02 Score=26.30 Aligned_cols=15 Identities=13% Similarity=0.062 Sum_probs=7.5
Q ss_pred HHcCCCHhHHHHHHH
Q 010853 101 LCREGYVNEVFRIAE 115 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~ 115 (499)
.++.|+.+-+..+++
T Consensus 9 A~~~g~~~iv~~Ll~ 23 (413)
T PHA02875 9 AILFGELDIARRLLD 23 (413)
T ss_pred HHHhCCHHHHHHHHH
Confidence 344556555544444
No 436
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.29 E-value=78 Score=20.34 Aligned_cols=49 Identities=6% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 406 HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
|....++.++..+++..-.++++..+.++...|. .+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4445666667766666666777777777776663 345555555555544
No 437
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=46.27 E-value=96 Score=21.36 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
.++++.+.+.++- +......+-.+-...|+.+.|.+++..+. .|. ..|...+.++...|..+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3444455444432 22222322222234466666666666665 432 2556666666665554433
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.19 E-value=2.1e+02 Score=25.16 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=47.6
Q ss_pred HHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhc----cCCCCCCchhhHHH-HHHHHHhcCChhhHHHHHHHHH
Q 010853 79 ERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM----PQGKSVNEEFACGH-MIDSLCRSGRNHGASRVVYVMR 153 (499)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~ 153 (499)
+...+..|-.-...++..+..-|++.++.+.+.++..+. ...|..-|+..... |.-.|....-.++-++..+.|.
T Consensus 103 ~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~i 182 (412)
T COG5187 103 REKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDII 182 (412)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 333333344444555555666666666666555544432 23343333322211 1112222233455555666666
Q ss_pred hcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010853 154 KRGLTPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 154 ~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (499)
+.|-.-+ -.+|..+.. ....++.+|-.++.+..
T Consensus 183 EkGgDWeRrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 183 EKGGDWERRNRYKVYKGIFK--MMRRNFKEAAILLSDIL 219 (412)
T ss_pred HhCCCHHhhhhHHHHHHHHH--HHHHhhHHHHHHHHHHh
Confidence 6553211 123332221 12345666666665544
No 439
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.66 E-value=3.7e+02 Score=27.93 Aligned_cols=258 Identities=12% Similarity=0.121 Sum_probs=121.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSL--VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
+-..|...|++++|+++-.. .|+. .++..-...|...+++..|-++|.++.+ .|..+.--+...
T Consensus 364 vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEI 429 (911)
T ss_pred HHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhc
Confidence 44557777888888765432 1232 2333445566777888888888888733 344444445555
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHH-----HHHHHHh-ccCCh----HHHHHHHHHHH--------h-cCCCCCHhhHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICN-----IYLRALC-LIKNP----TELLNVLVFML--------Q-TQCQPDVITLN 270 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~-~~~~~----~~a~~~~~~~~--------~-~~~~~~~~~~~ 270 (499)
.+.+....++.+=++ ..+|...+-. .++..+. +.++. +++..-++.-. . .....+.....
T Consensus 430 ~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nre 508 (911)
T KOG2034|consen 430 NQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRE 508 (911)
T ss_pred CCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 555543344333222 2333322211 1222221 12221 22222221110 0 00111222233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 350 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 350 (499)
+....+...|+.+....+-.-+.. |..++..+.+.+.+++|++++.+. ..|. ++-..--. ..
T Consensus 509 tv~~l~~~~~~~e~ll~fA~l~~d----------~~~vv~~~~q~e~yeeaLevL~~~-----~~~e--l~yk~ap~-Li 570 (911)
T KOG2034|consen 509 TVYQLLASHGRQEELLQFANLIKD----------YEFVVSYWIQQENYEEALEVLLNQ-----RNPE--LFYKYAPE-LI 570 (911)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhc-----cchh--hHHHhhhH-HH
Confidence 444445556666666655544442 566777788888888888877552 1122 11111111 11
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc---CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 351 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 351 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
...+.+....+..+... .+......++..+.+. .....+...++-....-...+...+|.++..|++..+-+
T Consensus 571 ~~~p~~tV~~wm~~~d~---~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ 645 (911)
T KOG2034|consen 571 THSPKETVSAWMAQKDL---DPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDD 645 (911)
T ss_pred hcCcHHHHHHHHHcccc---CchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccc
Confidence 22334444444333332 2222333344444443 223344444444443333447777888888887765533
No 440
>PRK09857 putative transposase; Provisional
Probab=45.35 E-value=1.9e+02 Score=25.71 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=12.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+...|.-+++.++..+|...|+.++
T Consensus 250 L~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 250 LRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333333455556666665555433
No 441
>PRK10941 hypothetical protein; Provisional
Probab=44.37 E-value=2.2e+02 Score=24.92 Aligned_cols=79 Identities=10% Similarity=-0.081 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHhHHHHHHHHhc
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKN-GLNPDAVTWRILDKLHG 489 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~ 489 (499)
.+.+-.+|.+.++++.|+++.+.+....+. ++.-+.--.-.|.+.|.+..|..=++...+. .-.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 344455666666667776666666665322 3444444444566666666666666666432 22344555555555444
Q ss_pred c
Q 010853 490 N 490 (499)
Q Consensus 490 ~ 490 (499)
.
T Consensus 263 ~ 263 (269)
T PRK10941 263 Q 263 (269)
T ss_pred h
Confidence 3
No 442
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=44.15 E-value=3.4e+02 Score=27.05 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=36.8
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 157 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~ 157 (499)
....|..|++.+. .=+.+...++++++.. . + ...+..++++....|......-+.+.+....+
T Consensus 309 ~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~ 371 (574)
T smart00638 309 AAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKI 371 (574)
T ss_pred hHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 3445555555443 3445556666666543 1 1 45677777777777777666666666665544
No 443
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=43.75 E-value=1.4e+02 Score=22.68 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC
Q 010853 337 GIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
+..+--.+.-++.+.. +..+.+.+++++.+...+ -.......|.-++.+.++++++.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3333333334444443 345556666666652211 12223344555666777777777777666544
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.61 E-value=2.4e+02 Score=25.26 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=75.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhcc---CCCCCc
Q 010853 261 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ---RGYSPG 337 (499)
Q Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 337 (499)
.+..|...++.|... +..++++-.+..++..+..+-.--...+.....-|++-|+.+.|++.+.+.+.. .|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 345566666665542 223445555555555544221223445666777899999999999888775533 355566
Q ss_pred hhhHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 338 IVTYNAVLRGL-FRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 338 ~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+..+..-+..+ ....-..+-++..+.+.+.|-..+. .+|..+- |....++.+|-.+|-+..
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 65544333222 2222334555555566666644332 3444432 344567888888887765
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.56 E-value=45 Score=16.84 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 010853 424 IHEAVHFLYELVD 436 (499)
Q Consensus 424 ~~~a~~~~~~~~~ 436 (499)
.+.|..+|+++..
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 446
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.21 E-value=2.6e+02 Score=25.50 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=32.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFR 112 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 112 (499)
.+.+..++.+.+.+........+.+.+|....+ . -+.....++..+.+.+++..+..
T Consensus 105 c~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~-q-lT~~H~~l~~~~L~ak~y~~~~p 161 (422)
T KOG2582|consen 105 CHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG-Q-LTSIHADLLQLCLEAKDYASVLP 161 (422)
T ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccCcc-c-hhhhHHHHHHHHHHhhcccccCC
Confidence 344556666667777666666667776665432 1 22334446666666666655443
No 447
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.82 E-value=1e+02 Score=27.18 Aligned_cols=70 Identities=9% Similarity=0.166 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----------cCChHHH
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK----------LSMKREA 462 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~a 462 (499)
.++|+.+...++.|.-+.+..+.-.+.+.=.+.+++.+++.+.. |..-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 57888888899999999999888888888899999999999875 33347777777764 3666655
Q ss_pred HHHHH
Q 010853 463 YQILR 467 (499)
Q Consensus 463 ~~~~~ 467 (499)
.++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 55543
No 448
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.77 E-value=73 Score=23.24 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=28.6
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 010853 21 SLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 66 (499)
Q Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 66 (499)
.....+...+..-.|.++++.+.+.+...+..|-...++.+.+.|-
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3444555556666777777777776655566665556666666554
No 449
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=42.08 E-value=1.3e+02 Score=25.22 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=13.6
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQG 120 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~ 120 (499)
+.....+.|+.++|.+.|..+...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334445556666666666665544
No 450
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.97 E-value=2.2e+02 Score=24.23 Aligned_cols=151 Identities=7% Similarity=-0.037 Sum_probs=69.0
Q ss_pred HhcCChHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHC-----GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+-.+++++|.++|.+.... ....--..|......+.+.|+-.+|-..|.+...-.... +..--...+...|..|
T Consensus 25 gg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIY 103 (288)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHH
Confidence 4455778888887765431 000111233344445555555555544444443332221 1111122333444555
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhc-CChhhHHHHHHHHHhc--CCCCChh---hHHHHHHHHHccC
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRS-GRNHGASRVVYVMRKR--GLTPSLV---SYNSIVHGLCKHG 175 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--g~~p~~~---~~~~l~~~~~~~~ 175 (499)
...|++..|-+..- .+...|-.. .++++|+..|+..-+- |-+.+.. .+.-+...-+..+
T Consensus 104 t~~Grf~~aAk~~~---------------~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~le 168 (288)
T KOG1586|consen 104 TDMGRFTMAAKHHI---------------EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLE 168 (288)
T ss_pred HhhhHHHHHHhhhh---------------hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHH
Confidence 55555554433222 233333332 4455555555544331 2121222 2223333344567
Q ss_pred ChhHHHHHHHHHHhCCCC
Q 010853 176 GCMRAYQLLEEGIQFGYL 193 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~ 193 (499)
++.+|..+|++.....+.
T Consensus 169 qY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 169 QYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 778888888877665443
No 451
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.74 E-value=1.2e+02 Score=23.53 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=32.8
Q ss_pred hccCCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRL-RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
+...|++++..- ..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344455544432 2344444443 34667777777777666555666655555666665543
No 452
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.55 E-value=4.3e+02 Score=27.56 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=97.3
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
.-..++++.+.+.+...--| .++|..+.+.|..+-|+...+.-..+ ...+...|+.+.|+
T Consensus 604 Li~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~al 663 (1202)
T KOG0292|consen 604 LLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEVAL 663 (1202)
T ss_pred HHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHHHH
Confidence 34466777777666544333 23566666777777776654432211 23345677777777
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 010853 182 QLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQ 261 (499)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (499)
+.-..+ -+..+|..|.......|+.+-|+..|++... |..+-..|.-.|+.++..++.......
T Consensus 664 e~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r- 727 (1202)
T KOG0292|consen 664 EAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR- 727 (1202)
T ss_pred HHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh-
Confidence 665442 3566788888888888888888888877652 344444556667777666655544322
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 010853 262 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 328 (499)
Q Consensus 262 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 328 (499)
.|..+. ... -.-.|+.++=.++++..-. .| ..|. ....+|.-++|.++.++.
T Consensus 728 --~D~~~~--~qn-alYl~dv~ervkIl~n~g~----~~--layl----ta~~~G~~~~ae~l~ee~ 779 (1202)
T KOG0292|consen 728 --NDATGQ--FQN-ALYLGDVKERVKILENGGQ----LP--LAYL----TAAAHGLEDQAEKLGEEL 779 (1202)
T ss_pred --hhhHHH--HHH-HHHhccHHHHHHHHHhcCc----cc--HHHH----HHhhcCcHHHHHHHHHhh
Confidence 122211 111 1124666666666654332 11 1121 122356666777766553
No 453
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.43 E-value=24 Score=31.37 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-HhHHHHHHHHHhcCChhhH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQLDEA 392 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 392 (499)
..|.++.|++.+...+... ++....|..-.+++.+.+.+..|+.=++...+.+ ||. .-|-.=-.+....|++++|
T Consensus 126 n~G~~~~ai~~~t~ai~ln--p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN--PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccC--CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHH
Confidence 3445555555554433222 2233333333344444555555555444444432 221 1222222222334555555
Q ss_pred HHHHHHHhcCCC
Q 010853 393 KRFWDDIVWPSN 404 (499)
Q Consensus 393 ~~~~~~~~~~~~ 404 (499)
...++...+.+.
T Consensus 202 a~dl~~a~kld~ 213 (377)
T KOG1308|consen 202 AHDLALACKLDY 213 (377)
T ss_pred HHHHHHHHhccc
Confidence 555555444433
No 454
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.11 E-value=3.1e+02 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 010853 271 TVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
.+..-+...|.++.|.+++++-.
T Consensus 123 ~laadhvAAGsFetAm~LLnrQi 145 (422)
T PF06957_consen 123 SLAADHVAAGSFETAMQLLNRQI 145 (422)
T ss_dssp -SHHHHHHCT-HHHHHHHHHHHC
T ss_pred CcHHHHHHhCCHHHHHHHHHHHh
Confidence 34555777888888888887654
No 455
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.50 E-value=51 Score=32.61 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=17.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
.-.-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.+.|+...+..+.+.+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444445455544444444443322111 11234444444455555554444444443
No 456
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.47 E-value=1.4e+02 Score=21.62 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 67777777777777777777777665
No 457
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.26 E-value=1.5e+02 Score=24.46 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 92 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
...+.++..|...|+++.|.++|.-+.......-...|..-+..+.+.+.-....+.++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 458
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.05 E-value=2.8e+02 Score=27.07 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
-.++.++...++.+.|.++++++.+
T Consensus 212 f~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 212 FYVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred EEEeEEEEEeccHHHHHHHHHHHHh
Confidence 3344455555555555555555554
No 459
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.51 E-value=27 Score=31.01 Aligned_cols=119 Identities=13% Similarity=-0.045 Sum_probs=77.1
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 427 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 427 (499)
....|.++.|++.|...++.. ++....|.-=.+++.+.+....|++=+......+.. ...-|-.--.+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 346788899999988888875 556666666677788888888888888877654332 112333334445556889999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 428 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...|....+.++.+....|. =...-+.+..++-...+++.+
T Consensus 202 a~dl~~a~kld~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL--KEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHhccccHHHHHHH--HHhccchhhhhhchhHHHHHH
Confidence 99998888887665444332 223444455555445555444
No 460
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.36 E-value=1.6e+02 Score=22.82 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
..-.|.++++.+.+.+...+..|....+..+..
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e 64 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 344455555555444433333333333333333
No 461
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.25 E-value=1.2e+02 Score=22.06 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=10.0
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 010853 453 ACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g 473 (499)
+.++...++|+++++-|.+.|
T Consensus 71 lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 71 LRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHhCcHHHHHHHHHHHHHhC
Confidence 334444445555555554444
No 462
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.66 E-value=3.6e+02 Score=25.84 Aligned_cols=108 Identities=9% Similarity=-0.005 Sum_probs=72.5
Q ss_pred HHHhcCChhhHHHHHHHHh---cCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCh---
Q 010853 382 GLCESNQLDEAKRFWDDIV---WPSNIHD-----NYVYAAMIKGLCRSGKIHEAVHFLYELVD-------SGVTPNI--- 443 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~---~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~--- 443 (499)
.+.-.|++.+|.+++-..- ..|...+ -..||.|...+.+.|.+..+..+|.+... .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 4556788888888876542 1221111 12357777777778888888888777663 4555432
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhccc
Q 010853 444 --------VCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNR 491 (499)
Q Consensus 444 --------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 491 (499)
.+||.=+ .|...|++-.|.+.|.+.... +.-++..|--|..+|...
T Consensus 329 ls~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 2355433 578899999999999998764 667889998888877543
No 463
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.59 E-value=4.5e+02 Score=26.92 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLP---NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
-+..+.+.+.+++|++..+..... .| -....-..+..+...|++++|....-+++.. +..-|..-+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---------~~~eWe~~V 430 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---------NAAEWELWV 430 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---------hHHHHHHHH
Confidence 355568889999999888776553 23 2345667888888999999998765554432 344455555
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR 138 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (499)
..+...++... ++.-++......+...|..++..+..
T Consensus 431 ~~f~e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 431 FKFAELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHhccccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 55555555443 33344444444556677777777665
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.46 E-value=2.2e+02 Score=23.06 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=11.9
Q ss_pred HHHHHccCChhHHHHHHHHHHh
Q 010853 168 VHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 168 ~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445555555555555555544
No 465
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.10 E-value=1.4e+02 Score=20.54 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
++|+-....|+..|...|..+++...-.=..+...++++.+.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555556666666665555554445555555555553
No 466
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.60 E-value=1.6e+02 Score=21.47 Aligned_cols=38 Identities=26% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
++..+.++...++|+++.+.|.+.| ..+...-+.|-..
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455667788899999999998888 5566555544433
No 467
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.56 E-value=3.2e+02 Score=24.58 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCcCHHhHHHHHHH-HHhcCChhhHHHHHHHHhcCCCCCCH----H
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLG----IGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDN----Y 409 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 409 (499)
..+......|++.||.+.|++.+....+ .|.+.|...+..=+.. |....-+.+-.+..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3455666779999999999988876543 4666666554432222 22222233333333444444443332 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+|..+- +....++.+|-.+|-+...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 454443 3344678888888877654
No 468
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.54 E-value=71 Score=17.06 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 459 KREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 459 ~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
++.|..+|++... +.|+..+|-
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 3455555555554 345555443
No 469
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=36.27 E-value=72 Score=21.20 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=18.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 421 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
.|+.+.+.+++++..+.|..|.......+..+....
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 355566666666666665555444444444444433
No 470
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.23 E-value=2.8e+02 Score=23.80 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.++...|++-++++.-.+...... -|...|-.-.++.+..-+.++|..=|....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 344444555555555555554432 2444444444444444455555555555444
No 471
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.21 E-value=4.9e+02 Score=26.62 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=62.7
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCC------Cc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCCCC
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV------NE-EFACGHMIDSLCRSGRNHGASRVVYVMRKR--GLTPS 160 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~p~ 160 (499)
...+...++-.|....+++..+++.+.++...-. ++ .+.|...++---+.|+-++|+...-.+.+. .+.||
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4456677888888889999999998887754210 11 112222233333457788888887776665 35566
Q ss_pred hhhHH-----HH--HHHHHccCChhHHHHHHHHHHhCCCCCCcc
Q 010853 161 LVSYN-----SI--VHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 197 (499)
Q Consensus 161 ~~~~~-----~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 197 (499)
..... -+ -..|...+..+.|.++|++.-+ +.|+..
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 54322 11 1223345567778888887655 455543
No 472
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.66 E-value=1.1e+02 Score=18.75 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.-++.+.|++++|.+..+.+.+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555666666666666666654
No 473
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.31 E-value=1.3e+02 Score=21.82 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=22.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444444455556666666666555445544444444444444
No 474
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.22 E-value=1.7e+02 Score=20.75 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
....+.++++...+. ..-+-....|.-.|.+.|+.+.+.+-|+. +...-|...+|..
T Consensus 54 ~~le~~~ek~~ak~~-~vpPG~HAhLGlLys~~G~~e~a~~eFet---EKalFPES~~fmD 110 (121)
T COG4259 54 AALEKYLEKIGAKNG-AVPPGYHAHLGLLYSNSGKDEQAVREFET---EKALFPESGVFMD 110 (121)
T ss_pred HHHHHHHHHHhhcCC-CCCCcHHHHHHHHHhhcCChHHHHHHHHH---hhhhCccchhHHH
Confidence 344455555554443 11112223344456677777777666654 3334455554443
No 475
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.92 E-value=1.1e+02 Score=28.79 Aligned_cols=107 Identities=8% Similarity=-0.019 Sum_probs=72.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTY-NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 386 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (499)
-+..+...+.++.|..++.++++. .|+...| ..--.++.+.+++..|..=+..+.+.. +--...|-.=..++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l---dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL---DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc---CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhH
Confidence 356677888999999999987754 4554443 333467889999999998888888764 22233343344566667
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 387 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 387 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+.+.+|...|+.... ..|+..-....+.-|-+
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 778888888887754 46666666666655443
No 476
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.82 E-value=2.7e+02 Score=22.85 Aligned_cols=27 Identities=26% Similarity=0.043 Sum_probs=16.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWER 80 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (499)
++...-.....|++++|..-+.++.+.
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~ 58 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEA 58 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444445556778888887766655443
No 477
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.71 E-value=86 Score=20.16 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 383 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (499)
...++.++...+...-.+.++..+.+....|. .+..+|---++.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~L 52 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSL 52 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 33444455545444445555555555555442 3334443333333
No 478
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=5.8e+02 Score=26.72 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=93.6
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
+|.-+-+.|-.+-|+...++ ..+ -...+...|+.+.|++.-..+- +..+|..|......+|+
T Consensus 626 iIaYLqKkgypeiAL~FVkD---------~~t---RF~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn 687 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKD---------ERT---RFELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGN 687 (1202)
T ss_pred HHHHHHhcCCcceeeeeecC---------cch---heeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcc
Confidence 55556666766666554332 222 2334567788888877655433 67889999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
.+-|.-.|+..+. |..|--.|.-.|+.++..++.+....++... .......-.|+.++-.+++..
T Consensus 688 ~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D~~------~~~qnalYl~dv~ervkIl~n 752 (1202)
T KOG0292|consen 688 HQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRNDAT------GQFQNALYLGDVKERVKILEN 752 (1202)
T ss_pred hHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhH------HHHHHHHHhccHHHHHHHHHh
Confidence 9999999988755 2333344667888888877776664332111 111111224555555555433
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 296 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 296 (499)
. |.. + ..|.. -...|.-+.|.++.++...+.
T Consensus 753 ~---g~~-~-laylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 753 G---GQL-P-LAYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred c---Ccc-c-HHHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 2 221 1 12211 123577788888888877643
No 479
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=32.25 E-value=1.3e+02 Score=22.85 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 453 ACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
+.+.|-..+...++++|.++|+..+...|+..++-.
T Consensus 119 ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 119 AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 344566666777777777777777777777666543
No 480
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.88 E-value=1.9e+02 Score=20.55 Aligned_cols=59 Identities=7% Similarity=-0.095 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
+.-.+.+++....+....+-....|.-.|++.|+.+.|.+-|+.=+. +-|.+.+|.-++
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFL 112 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFL 112 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHH
Confidence 33445566666554333333444555567888888888777776544 566666655444
No 481
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.76 E-value=2.2e+02 Score=21.21 Aligned_cols=57 Identities=5% Similarity=-0.050 Sum_probs=32.9
Q ss_pred HhcCChHHHHHHHHHHH--hCCCCC---------ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhh
Q 010853 27 AITGEMDVAYKVFDEMR--HCGVLP---------NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 83 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~--~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 83 (499)
...|.+++|..-.+... .+.++| |..++..|-.++...|++++++.-....+.-...
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 56677887777666642 233433 2344555777888888888887655554444333
No 482
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.68 E-value=1.9e+02 Score=20.44 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
.+...+++....... ....|+..|+.++...|.-..|..+-+.+.+.|
T Consensus 47 ~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 455566665555432 234567777777777777777777766666655
No 483
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=31.21 E-value=2.8e+02 Score=22.31 Aligned_cols=111 Identities=11% Similarity=0.047 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
....++..+.+.|.-.|...-...+..-.+.| ..-..+.+++...|+ +..+....+..+......+.|..++.+-.
T Consensus 53 ~Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~ 128 (174)
T COG2137 53 IIEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKF 128 (174)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 35666666677776666665555666555555 444556666666664 44445555554555555555655555443
Q ss_pred HcC-CCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 010853 436 DSG-VTPNIVCYNVVIDGACKLS-MKREAYQILREMR 470 (499)
Q Consensus 436 ~~~-~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~ 470 (499)
... ..++..-...+.+.+...| .++.+..++..+.
T Consensus 129 ~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~~ 165 (174)
T COG2137 129 KRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEAE 165 (174)
T ss_pred CccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 332 3445444555555555555 3444555555443
No 484
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.81 E-value=2.1e+02 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=7.1
Q ss_pred hcCCHHHHHHHHHHHhh
Q 010853 278 KMGRIEEALKVLNDMVA 294 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~ 294 (499)
+.|-.+++...+.++..
T Consensus 81 klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 81 KLGLASALESRLTRLAS 97 (116)
T ss_dssp HCT-HHHHHHHHHHHCT
T ss_pred hhccHHHHHHHHHHHHh
Confidence 44444444444444443
No 485
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.43 E-value=4e+02 Score=23.85 Aligned_cols=194 Identities=14% Similarity=0.042 Sum_probs=0.0
Q ss_pred hHHHHHHhcCChHHHHHHHHHH-HhCCCCCChhhHHHHHHHHhccC------CHHHHH-------HHHHHHHHHhhhccC
Q 010853 21 SLTSALAITGEMDVAYKVFDEM-RHCGVLPNSLTYSVLVRGVLRTR------DVERAN-------VLMFKLWERMKEEED 86 (499)
Q Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~-------~~~~~~~~~~~~~~~ 86 (499)
.+.-+-...-++..+++++..+ .. .++...|..++..+.... +..... .++..+++++.....
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~---E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 121 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPN---ETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPR 121 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT-----SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccC---CCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q ss_pred --CccCHHhHHHHHHHHHcCCCHh---HHHHHHHhccCC-CC---CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 010853 87 --LSVNNAAFANLVDSLCREGYVN---EVFRIAEDMPQG-KS---VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL 157 (499)
Q Consensus 87 --~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~ 157 (499)
-..........+-.++- |+.+ +|.+.|+..... .. ..++.....++....+.|+.+....+++.....
T Consensus 122 ~~~~~~~~~lr~~~~~~a~-~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~-- 198 (324)
T PF11838_consen 122 PGEDHNDRLLRALLLSLAC-GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS-- 198 (324)
T ss_dssp --SCHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT--
T ss_pred ccccHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc--
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH-hcCCCHHHHHHHHHH
Q 010853 158 TPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL-CGESDLEKARKVLQF 221 (499)
Q Consensus 158 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 221 (499)
++......++.+.+-..+.+...++++.....+..++......+.... ......+.+.+.+..
T Consensus 199 -~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 -TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp -STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred -CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 486
>PRK09857 putative transposase; Provisional
Probab=30.30 E-value=3.9e+02 Score=23.74 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 442 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 442 (499)
..++......++.++..++++.+.+... .......++..-+...|.-+++.++..+|...|+.++
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSP-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444444455666556666655544322 1222334555666666666677888888888887654
No 487
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.11 E-value=1.3e+02 Score=22.05 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=24.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 455555555556667777777776665555554444444444444
No 488
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=30.11 E-value=2.2e+02 Score=21.65 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 010853 251 LNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 301 (499)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (499)
..+.+..++.|-.-...++..++--+...|+++.|+++.+.+.+.+...|+
T Consensus 33 ~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 33 LPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred HHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
No 489
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.88 E-value=1.8e+02 Score=19.61 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=6.2
Q ss_pred HcCCCHhHHHHHHH
Q 010853 102 CREGYVNEVFRIAE 115 (499)
Q Consensus 102 ~~~~~~~~a~~~~~ 115 (499)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 490
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.88 E-value=1.5e+02 Score=18.80 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=14.4
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMID 134 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 134 (499)
...|++=+|-++++.+=.....+....+..+|.
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq 42 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQ 42 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHH
Confidence 345555556666555543322233334444443
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=29.66 E-value=82 Score=23.22 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=25.2
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 65 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 65 (499)
......+..++..-.|.++++.+.+.+...+..|...-+..+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3344455555556667777777776665555555444455555544
No 492
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.63 E-value=4.8e+02 Score=24.49 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=66.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH--hHHHHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLT--YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFANLVDSLC 102 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 102 (499)
.+.|+.+-+. .+.+.|..|+... ..+.+...+..|+.+-+.-+ ++. +..|+.. ...+.+...+
T Consensus 10 ~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~L----l~~-----ga~~~~~~~~~~t~L~~A~ 76 (413)
T PHA02875 10 ILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLL----MKH-----GAIPDVKYPDIESELHDAV 76 (413)
T ss_pred HHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHH----HhC-----CCCccccCCCcccHHHHHH
Confidence 5566665444 4445566565432 23344555567776644332 221 2222211 1122455566
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHHccCChhHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~~~~~~~~a 180 (499)
..|+.+.+..+++.-.......+..-. +.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+
T Consensus 77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 77 EEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred HCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 778888877777643221111111111 233334455554 45555566676665432 12344555567776554
Q ss_pred HHHH
Q 010853 181 YQLL 184 (499)
Q Consensus 181 ~~~~ 184 (499)
..++
T Consensus 152 ~~Ll 155 (413)
T PHA02875 152 ELLI 155 (413)
T ss_pred HHHH
Confidence 4444
No 493
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.28 E-value=3.5e+02 Score=22.87 Aligned_cols=175 Identities=14% Similarity=-0.000 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
.+.....++++.+...+. .+..-...+...+...+.... ....+.....-..|....-..-.-.+...+++++|.+.+
T Consensus 24 ~s~~~L~~Ll~~i~~~~~-~~~~K~~l~~YlLlD~~~~~~-~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L 101 (226)
T PF13934_consen 24 KSDNDLRALLDLILSSNV-SLLKKHSLFYYLLLDLDDTRP-SELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL 101 (226)
T ss_pred cCHHHHHHHHHHHhcCCc-CHHHhHHHHHHHHHhcCcccc-ccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
..+......-..++..+...|+...|+.+++.... ..+...-..+......++.+.+|...-+......+-
T Consensus 102 -----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p----~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~~~~~ 172 (226)
T PF13934_consen 102 -----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGP----PLSSPEALTLYFVALANGLVTEAFSFQRSYPDELRR 172 (226)
T ss_pred -----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCC----CCCCHHHHHHHHHHHHcCCHHHHHHHHHhCchhhhH
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEV 360 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~ 360 (499)
.--...+..++..+.+.+..++...+
T Consensus 173 ~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 173 RLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhC
No 494
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.12 E-value=3.3e+02 Score=24.72 Aligned_cols=64 Identities=13% Similarity=-0.005 Sum_probs=48.5
Q ss_pred HhHHHHHHHhccCCCCCCc----hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNE----EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 172 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 172 (499)
.++++.+++++.+.- |+ +.-|-.+.......|.++..+.+|++....|..|=...-..++.++-
T Consensus 119 ~eei~~~L~~li~~I--P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKNI--PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346777777655432 33 34577888888889999999999999999998888777777777765
No 495
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=28.61 E-value=3.5e+02 Score=22.65 Aligned_cols=22 Identities=14% Similarity=0.049 Sum_probs=13.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHC
Q 010853 451 DGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
....+.|+.++|.+.|.++...
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcC
Confidence 3445566666666666666543
No 496
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.42 E-value=2.3e+02 Score=20.53 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 010853 281 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 360 (499)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 360 (499)
..++|..+.+-+...+ ......--+-+..+.+.|++++|+. . ......||...|.++ +-.+.|-.+++...
T Consensus 21 cH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl---~--~~~~~~pdL~p~~AL--~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALL---L--PQCHCYPDLEPWAAL--CAWKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHH---H--HTTS--GGGHHHHHH--HHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHH---h--cccCCCccHHHHHHH--HHHhhccHHHHHHH
Confidence 3455666665555533 1122222233445666777777722 1 123335665555444 33466666777777
Q ss_pred HHHHhhCC
Q 010853 361 FNCMLGIG 368 (499)
Q Consensus 361 ~~~~~~~~ 368 (499)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 76666655
No 497
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=28.24 E-value=64 Score=20.57 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDA 302 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~ 302 (499)
.-+++.|...|.++...+.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 447888888888888766656554
No 498
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=27.98 E-value=2.1e+02 Score=19.84 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhcc
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ 331 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 331 (499)
|....-.+...+...|++++|++.+-++++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444444555555555555555555554433
No 499
>PRK12356 glutaminase; Reviewed
Probab=27.80 E-value=4.5e+02 Score=23.66 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=7.9
Q ss_pred CCccCHHhHHHHHHHH
Q 010853 86 DLSVNNAAFANLVDSL 101 (499)
Q Consensus 86 ~~~~~~~~~~~l~~~~ 101 (499)
+..|+...||+++..-
T Consensus 93 G~EPSG~~FNsi~~Le 108 (319)
T PRK12356 93 GADPTGLPFNSVIAIE 108 (319)
T ss_pred CCCCCCCCcchHHHhh
Confidence 4445555555554443
No 500
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=27.67 E-value=1.9e+02 Score=19.14 Aligned_cols=32 Identities=19% Similarity=0.104 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc
Q 010853 281 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN 314 (499)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 314 (499)
+.+.|..++.++.... ..++..|+++.+.+.+
T Consensus 12 DtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchh--hcChHHHHHHHHHHHH
Confidence 4566777777776554 5666777776655543
Done!