Query 010853
Match_columns 499
No_of_seqs 690 out of 2678
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 15:39:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 8.2E-40 2.8E-44 320.5 44.2 445 23-489 91-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.4E-39 2.9E-43 313.3 39.1 442 27-493 64-565 (597)
3 4g26_A Pentatricopeptide repea 100.0 7E-32 2.4E-36 252.7 22.7 186 304-490 28-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-28 7.5E-33 225.9 43.3 154 26-188 9-162 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-28 1.9E-32 223.2 44.8 383 57-458 5-388 (388)
6 4g26_A Pentatricopeptide repea 100.0 2E-30 6.8E-35 242.9 23.9 185 269-455 29-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 2.7E-25 9.1E-30 213.5 36.0 433 22-471 12-477 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 7.3E-23 2.5E-27 193.0 37.1 367 91-495 26-442 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 3.3E-23 1.1E-27 195.3 34.8 387 34-461 10-443 (450)
10 2gw1_A Mitochondrial precursor 99.9 5E-23 1.7E-27 197.6 33.3 426 51-493 6-464 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.8E-22 6.3E-27 194.8 37.0 426 23-471 32-490 (537)
12 3fp2_A TPR repeat-containing p 99.9 5.6E-22 1.9E-26 191.4 39.1 395 22-439 65-493 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.7E-19 6E-24 164.3 37.1 326 129-488 6-350 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.1E-20 2.8E-24 166.6 34.3 325 51-437 3-335 (359)
15 3hym_B Cell division cycle pro 99.9 2.1E-19 7.3E-24 161.7 32.0 292 193-494 19-321 (330)
16 3hym_B Cell division cycle pro 99.9 9.4E-19 3.2E-23 157.5 33.5 287 124-418 20-314 (330)
17 2xm6_A Protein corresponding t 99.9 5.7E-17 2E-21 154.0 46.4 368 33-440 24-435 (490)
18 2ooe_A Cleavage stimulation fa 99.9 2.9E-17 9.9E-22 157.7 43.8 413 39-471 2-491 (530)
19 1b89_A Protein (clathrin heavy 99.9 4.2E-19 1.4E-23 158.4 26.3 291 20-361 7-305 (449)
20 2xm6_A Protein corresponding t 99.9 1.8E-16 6.1E-21 150.6 45.5 353 90-474 38-434 (490)
21 1fch_A Peroxisomal targeting s 99.8 4.3E-19 1.5E-23 162.4 25.1 290 174-469 38-356 (368)
22 2ooe_A Cleavage stimulation fa 99.8 1.4E-16 4.7E-21 152.9 40.4 393 90-493 12-478 (530)
23 1fch_A Peroxisomal targeting s 99.8 1.8E-18 6.3E-23 158.2 26.2 307 101-433 35-355 (368)
24 4eqf_A PEX5-related protein; a 99.8 4.2E-18 1.4E-22 155.6 23.7 264 199-468 68-352 (365)
25 4eqf_A PEX5-related protein; a 99.8 2.1E-18 7.2E-23 157.6 21.0 258 230-493 64-342 (365)
26 1b89_A Protein (clathrin heavy 99.8 8.5E-19 2.9E-23 156.5 17.0 284 63-396 15-305 (449)
27 3cv0_A Peroxisome targeting si 99.8 3E-17 1E-21 147.5 25.6 263 199-469 24-312 (327)
28 1xi4_A Clathrin heavy chain; a 99.8 1.6E-14 5.6E-19 144.2 45.5 410 17-493 951-1370(1630)
29 1xi4_A Clathrin heavy chain; a 99.8 1.7E-14 5.8E-19 144.1 43.6 378 20-464 989-1376(1630)
30 3cv0_A Peroxisome targeting si 99.8 6.4E-17 2.2E-21 145.2 24.5 279 126-434 21-312 (327)
31 3mkr_A Coatomer subunit epsilo 99.8 1.7E-16 5.8E-21 138.9 26.2 249 171-437 9-264 (291)
32 3mkr_A Coatomer subunit epsilo 99.8 1.7E-16 5.7E-21 139.0 25.3 256 205-479 8-269 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.8 7.8E-19 2.7E-23 169.3 10.9 152 336-492 125-286 (1134)
34 4g1t_A Interferon-induced prot 99.8 1.2E-15 4.2E-20 144.4 32.2 398 49-481 49-469 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.8 8.6E-18 2.9E-22 162.2 14.8 117 370-486 124-244 (1134)
36 4g1t_A Interferon-induced prot 99.7 1.2E-14 4.1E-19 137.6 31.2 383 22-438 57-460 (472)
37 3uq3_A Heat shock protein STI1 99.7 8.9E-15 3E-19 126.3 24.6 224 233-471 7-235 (258)
38 2pl2_A Hypothetical conserved 99.7 4.7E-15 1.6E-19 124.0 20.8 199 264-470 3-212 (217)
39 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-14 4.7E-19 135.4 25.7 378 56-470 8-419 (452)
40 3e4b_A ALGK; tetratricopeptide 99.7 3.4E-14 1.1E-18 132.8 27.7 380 20-436 7-420 (452)
41 3uq3_A Heat shock protein STI1 99.7 9.2E-15 3.1E-19 126.2 21.7 118 316-437 119-236 (258)
42 4e6h_A MRNA 3'-END-processing 99.7 5.6E-12 1.9E-16 121.7 40.8 446 32-490 48-586 (679)
43 2pl2_A Hypothetical conserved 99.7 1.8E-14 6E-19 120.5 20.2 193 234-434 8-211 (217)
44 3u4t_A TPR repeat-containing p 99.6 1E-13 3.4E-18 120.7 25.6 164 269-437 77-250 (272)
45 2vq2_A PILW, putative fimbrial 99.6 1.5E-13 5E-18 115.9 25.9 213 265-484 7-221 (225)
46 2ho1_A Type 4 fimbrial biogene 99.6 9.8E-14 3.4E-18 119.3 24.8 208 267-482 38-246 (252)
47 3u4t_A TPR repeat-containing p 99.6 1.5E-13 5E-18 119.7 26.0 251 233-491 5-268 (272)
48 2q7f_A YRRB protein; TPR, prot 99.6 3.2E-14 1.1E-18 121.6 20.1 212 264-484 21-233 (243)
49 2ho1_A Type 4 fimbrial biogene 99.6 3.9E-13 1.3E-17 115.5 26.6 201 232-438 38-239 (252)
50 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.6E-14 1.6E-18 123.1 20.2 247 208-466 17-269 (275)
51 2vq2_A PILW, putative fimbrial 99.6 3.9E-13 1.3E-17 113.3 25.2 202 231-437 8-211 (225)
52 2h6f_A Protein farnesyltransfe 99.6 2.3E-13 7.7E-18 123.1 23.9 246 233-489 99-364 (382)
53 1ouv_A Conserved hypothetical 99.6 3.8E-12 1.3E-16 110.8 30.3 222 232-473 7-252 (273)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 6.4E-14 2.2E-18 122.2 19.0 187 27-224 16-205 (275)
55 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.6E-18 118.3 19.5 198 234-438 26-223 (243)
56 1ouv_A Conserved hypothetical 99.6 4.4E-12 1.5E-16 110.3 29.1 178 244-438 55-252 (273)
57 2h6f_A Protein farnesyltransfe 99.6 5.4E-13 1.9E-17 120.7 22.4 246 163-454 99-364 (382)
58 3sf4_A G-protein-signaling mod 99.6 8.7E-14 3E-18 128.9 16.5 277 160-470 8-334 (406)
59 3sf4_A G-protein-signaling mod 99.5 2.1E-13 7.2E-18 126.2 17.5 307 124-459 7-363 (406)
60 4a1s_A PINS, partner of inscut 99.5 1.6E-13 5.6E-18 127.3 16.6 276 163-471 50-371 (411)
61 4a1s_A PINS, partner of inscut 99.5 2E-13 6.8E-18 126.7 16.9 233 25-258 57-330 (411)
62 3vtx_A MAMA; tetratricopeptide 99.5 2.4E-12 8E-17 104.7 21.3 171 301-478 4-174 (184)
63 2ond_A Cleavage stimulation fa 99.5 1.3E-11 4.6E-16 109.2 27.0 216 248-471 33-269 (308)
64 3ro2_A PINS homolog, G-protein 99.5 3.1E-13 1E-17 121.6 16.3 275 164-471 8-331 (338)
65 3ro2_A PINS homolog, G-protein 99.5 4.1E-13 1.4E-17 120.7 16.3 276 23-330 12-331 (338)
66 4e6h_A MRNA 3'-END-processing 99.5 4.6E-10 1.6E-14 108.5 37.7 424 18-453 65-584 (679)
67 3ulq_A Response regulator aspa 99.5 4.3E-12 1.5E-16 116.4 22.4 230 239-471 111-367 (383)
68 3vtx_A MAMA; tetratricopeptide 99.5 7.9E-12 2.7E-16 101.5 20.7 167 265-437 4-170 (184)
69 3ulq_A Response regulator aspa 99.5 1E-11 3.6E-16 113.8 23.1 233 202-436 109-367 (383)
70 3nf1_A KLC 1, kinesin light ch 99.5 3.8E-13 1.3E-17 119.5 12.3 205 266-471 69-306 (311)
71 4abn_A Tetratricopeptide repea 99.5 2.8E-12 9.4E-17 120.6 18.7 195 265-466 101-315 (474)
72 2ond_A Cleavage stimulation fa 99.5 7.3E-11 2.5E-15 104.4 26.9 220 213-438 33-271 (308)
73 4abn_A Tetratricopeptide repea 99.4 6.6E-12 2.3E-16 118.0 20.2 213 212-433 84-317 (474)
74 3nf1_A KLC 1, kinesin light ch 99.4 8.7E-13 3E-17 117.2 13.2 248 161-437 27-307 (311)
75 1hz4_A MALT regulatory protein 99.4 9.4E-11 3.2E-15 107.0 26.0 199 26-224 24-243 (373)
76 3q15_A PSP28, response regulat 99.4 5.6E-11 1.9E-15 108.7 23.4 229 239-471 109-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.4 1E-10 3.5E-15 94.9 20.2 164 303-471 9-172 (186)
78 1hz4_A MALT regulatory protein 99.4 5.2E-10 1.8E-14 102.1 26.5 273 165-437 18-322 (373)
79 3q15_A PSP28, response regulat 99.4 8.5E-10 2.9E-14 100.8 27.3 91 133-223 108-209 (378)
80 3as5_A MAMA; tetratricopeptide 99.3 1.2E-10 4.2E-15 94.4 19.4 167 266-438 8-174 (186)
81 4gyw_A UDP-N-acetylglucosamine 99.3 6.2E-11 2.1E-15 115.9 19.9 165 301-470 8-172 (723)
82 4i17_A Hypothetical protein; T 99.3 3.3E-10 1.1E-14 95.4 19.9 206 264-485 5-220 (228)
83 3edt_B KLC 2, kinesin light ch 99.3 7E-11 2.4E-15 103.2 15.3 229 242-471 12-280 (283)
84 4gyw_A UDP-N-acetylglucosamine 99.3 1.6E-10 5.3E-15 113.1 19.0 166 265-436 8-173 (723)
85 4i17_A Hypothetical protein; T 99.3 7.5E-10 2.6E-14 93.2 20.5 197 231-438 7-210 (228)
86 3edt_B KLC 2, kinesin light ch 99.3 1.2E-10 4.1E-15 101.7 15.8 230 207-437 12-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.2 1.1E-08 3.6E-13 87.8 25.3 185 285-479 85-287 (310)
88 2uy1_A Cleavage stimulation fa 99.2 6E-08 2.1E-12 91.0 30.3 208 248-471 196-412 (493)
89 1qqe_A Vesicular transport pro 99.2 1.6E-09 5.5E-14 94.9 17.9 165 59-223 45-226 (292)
90 4ga2_A E3 SUMO-protein ligase 99.1 3E-10 1E-14 88.3 10.5 143 347-494 6-150 (150)
91 1qqe_A Vesicular transport pro 99.1 1.7E-09 6E-14 94.7 16.6 198 24-223 45-267 (292)
92 3urz_A Uncharacterized protein 99.1 3E-09 1E-13 87.9 16.9 138 343-486 59-198 (208)
93 2fo7_A Synthetic consensus TPR 99.1 3.3E-09 1.1E-13 80.7 16.0 128 341-471 4-131 (136)
94 3qky_A Outer membrane assembly 99.1 5.3E-09 1.8E-13 90.0 19.0 100 266-367 15-126 (261)
95 3qky_A Outer membrane assembly 99.1 6.8E-09 2.3E-13 89.3 18.6 177 299-478 12-228 (261)
96 2fo7_A Synthetic consensus TPR 99.1 9.7E-09 3.3E-13 78.0 16.5 129 305-437 4-132 (136)
97 3mv2_B Coatomer subunit epsilo 99.1 6.4E-08 2.2E-12 83.0 22.8 28 267-294 137-164 (310)
98 3urz_A Uncharacterized protein 99.0 9.9E-09 3.4E-13 84.8 16.6 131 308-445 60-192 (208)
99 2pzi_A Probable serine/threoni 99.0 3.7E-09 1.3E-13 104.0 15.6 174 277-458 402-583 (681)
100 4ga2_A E3 SUMO-protein ligase 99.0 2.7E-09 9.1E-14 82.9 11.4 145 309-458 4-149 (150)
101 2r5s_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 82.0 15.2 157 309-470 13-171 (176)
102 2uy1_A Cleavage stimulation fa 99.0 2.3E-07 7.9E-12 87.1 25.7 347 63-469 6-380 (493)
103 3dra_A Protein farnesyltransfe 99.0 2.7E-07 9.1E-12 80.0 23.8 225 27-294 43-286 (306)
104 2pzi_A Probable serine/threoni 99.0 9.3E-09 3.2E-13 101.2 16.5 174 242-423 402-583 (681)
105 3rjv_A Putative SEL1 repeat pr 99.0 7E-08 2.4E-12 79.8 19.4 175 285-473 5-198 (212)
106 3dra_A Protein farnesyltransfe 99.0 3.2E-07 1.1E-11 79.5 24.0 217 248-471 50-286 (306)
107 2yhc_A BAMD, UPF0169 lipoprote 99.0 7.6E-08 2.6E-12 80.6 19.5 190 265-473 3-214 (225)
108 3qou_A Protein YBBN; thioredox 99.0 5E-08 1.7E-12 85.0 18.9 165 301-470 116-282 (287)
109 2r5s_A Uncharacterized protein 99.0 1.5E-08 5E-13 81.3 14.2 163 268-436 8-172 (176)
110 3qou_A Protein YBBN; thioredox 98.9 3.4E-08 1.1E-12 86.1 16.7 166 265-436 116-283 (287)
111 3rjv_A Putative SEL1 repeat pr 98.9 1.7E-07 5.9E-12 77.5 19.7 177 249-439 4-199 (212)
112 2vsy_A XCC0866; transferase, g 98.9 3.2E-08 1.1E-12 95.6 17.5 164 279-449 2-168 (568)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.8E-07 6.1E-12 78.3 19.8 188 231-439 4-215 (225)
114 2vsy_A XCC0866; transferase, g 98.9 3.4E-08 1.2E-12 95.5 17.5 156 244-405 2-160 (568)
115 2ifu_A Gamma-SNAP; membrane fu 98.9 2.2E-08 7.6E-13 88.3 14.5 159 29-188 4-182 (307)
116 3u3w_A Transcriptional activat 98.9 1.8E-07 6.2E-12 81.9 20.1 164 308-471 81-265 (293)
117 3u3w_A Transcriptional activat 98.9 6.6E-07 2.3E-11 78.3 23.1 166 271-436 80-265 (293)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 3.8E-08 1.3E-12 86.8 15.2 95 340-435 118-222 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.9E-07 1.3E-11 75.4 19.3 130 303-438 7-151 (213)
120 2qfc_A PLCR protein; TPR, HTH, 98.8 8.5E-07 2.9E-11 77.6 21.0 168 303-470 76-264 (293)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.8E-07 1.6E-11 74.9 18.4 130 267-404 7-152 (213)
122 3gyz_A Chaperone protein IPGC; 98.8 2.1E-08 7.2E-13 77.4 8.6 104 372-479 35-138 (151)
123 4gco_A Protein STI-1; structur 98.8 2.5E-07 8.5E-12 69.1 14.3 99 375-477 15-113 (126)
124 4f3v_A ESX-1 secretion system 98.7 2.4E-07 8.2E-12 78.4 14.5 195 27-225 17-237 (282)
125 3gw4_A Uncharacterized protein 98.7 1E-07 3.5E-12 78.3 12.1 161 27-188 3-174 (203)
126 2vgx_A Chaperone SYCD; alterna 98.7 6.2E-08 2.1E-12 74.8 10.1 97 373-471 21-117 (148)
127 1a17_A Serine/threonine protei 98.7 4.5E-07 1.5E-11 71.6 15.5 129 339-470 14-144 (166)
128 2qfc_A PLCR protein; TPR, HTH, 98.7 2.6E-06 8.9E-11 74.4 21.7 170 267-436 76-265 (293)
129 3q7a_A Farnesyltransferase alp 98.7 7.3E-06 2.5E-10 71.9 23.9 231 247-485 70-344 (349)
130 3q7a_A Farnesyltransferase alp 98.7 7.6E-06 2.6E-10 71.7 23.9 174 27-210 65-256 (349)
131 4gco_A Protein STI-1; structur 98.7 4.3E-07 1.5E-11 67.8 13.8 108 339-449 14-121 (126)
132 2e2e_A Formate-dependent nitri 98.7 1.7E-07 5.7E-12 75.1 11.8 120 314-437 22-144 (177)
133 2lni_A Stress-induced-phosphop 98.7 7.3E-07 2.5E-11 67.3 14.4 96 374-471 17-112 (133)
134 1na0_A Designed protein CTPR3; 98.7 9.5E-07 3.3E-11 65.6 14.5 95 375-471 11-105 (125)
135 2vyi_A SGTA protein; chaperone 98.7 5.8E-07 2E-11 67.5 13.5 115 340-457 14-128 (131)
136 1a17_A Serine/threonine protei 98.7 9.7E-07 3.3E-11 69.6 15.2 129 303-435 14-144 (166)
137 2lni_A Stress-induced-phosphop 98.7 8.3E-07 2.8E-11 66.9 14.1 120 335-457 13-132 (133)
138 4f3v_A ESX-1 secretion system 98.7 2.3E-07 7.9E-12 78.5 11.7 198 278-485 18-248 (282)
139 3gw4_A Uncharacterized protein 98.7 3.7E-07 1.3E-11 74.9 12.8 120 278-399 4-133 (203)
140 1na0_A Designed protein CTPR3; 98.6 1.4E-06 4.7E-11 64.7 14.6 116 338-456 9-124 (125)
141 2xcb_A PCRH, regulatory protei 98.6 2.7E-07 9.1E-12 70.8 10.2 95 341-437 21-115 (142)
142 4gcn_A Protein STI-1; structur 98.6 7.4E-07 2.5E-11 66.6 12.2 107 375-484 10-122 (127)
143 2c2l_A CHIP, carboxy terminus 98.6 8.2E-07 2.8E-11 77.0 14.2 192 232-436 5-198 (281)
144 3upv_A Heat shock protein STI1 98.6 1.1E-06 3.8E-11 65.6 12.9 96 374-471 5-100 (126)
145 2c2l_A CHIP, carboxy terminus 98.6 4.3E-07 1.5E-11 78.7 11.9 194 265-471 3-198 (281)
146 3gyz_A Chaperone protein IPGC; 98.6 4.7E-07 1.6E-11 69.8 10.8 99 338-438 36-134 (151)
147 2e2e_A Formate-dependent nitri 98.6 4.1E-07 1.4E-11 72.8 11.0 119 350-471 22-143 (177)
148 2vgx_A Chaperone SYCD; alterna 98.6 6.4E-07 2.2E-11 69.1 11.1 100 337-438 20-119 (148)
149 1p5q_A FKBP52, FK506-binding p 98.6 1.5E-06 5.2E-11 77.4 15.1 94 374-469 197-291 (336)
150 2vyi_A SGTA protein; chaperone 98.5 2.5E-06 8.5E-11 63.9 13.7 95 268-366 14-108 (131)
151 3upv_A Heat shock protein STI1 98.5 3E-06 1E-10 63.2 13.2 97 339-437 5-101 (126)
152 1p5q_A FKBP52, FK506-binding p 98.5 2.7E-06 9.2E-11 75.8 14.9 96 338-435 196-292 (336)
153 1elw_A TPR1-domain of HOP; HOP 98.5 6.6E-06 2.2E-10 60.2 14.6 96 374-471 5-100 (118)
154 1elw_A TPR1-domain of HOP; HOP 98.5 7.6E-06 2.6E-10 59.9 14.2 98 339-438 5-102 (118)
155 3sz7_A HSC70 cochaperone (SGT) 98.4 2.8E-06 9.6E-11 66.9 11.9 100 337-438 10-109 (164)
156 3dss_A Geranylgeranyl transfer 98.4 0.00021 7.2E-09 62.3 24.5 187 282-477 90-307 (331)
157 2xcb_A PCRH, regulatory protei 98.4 2.6E-06 8.8E-11 65.2 11.3 98 372-471 17-114 (142)
158 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-07 1E-11 75.2 6.0 95 374-470 89-184 (198)
159 4gcn_A Protein STI-1; structur 98.4 4.8E-06 1.7E-10 62.1 12.2 104 340-446 10-119 (127)
160 3q49_B STIP1 homology and U bo 98.4 7.9E-06 2.7E-10 61.9 13.5 97 372-470 8-104 (137)
161 2dba_A Smooth muscle cell asso 98.4 1.7E-05 6E-10 60.8 15.7 115 372-489 27-144 (148)
162 4b4t_Q 26S proteasome regulato 98.4 1.1E-05 3.8E-10 74.9 17.1 201 23-223 11-243 (434)
163 1elr_A TPR2A-domain of HOP; HO 98.4 5.4E-06 1.8E-10 62.1 12.3 110 375-487 6-121 (131)
164 2fbn_A 70 kDa peptidylprolyl i 98.4 5.6E-06 1.9E-10 67.5 13.1 156 277-436 15-185 (198)
165 1hxi_A PEX5, peroxisome target 98.4 3.4E-06 1.2E-10 62.3 10.5 92 378-471 22-113 (121)
166 3sz7_A HSC70 cochaperone (SGT) 98.4 8.1E-06 2.8E-10 64.2 13.3 99 301-402 10-108 (164)
167 2kck_A TPR repeat; tetratricop 98.4 4.8E-06 1.6E-10 60.4 11.0 97 374-471 7-105 (112)
168 4b4t_Q 26S proteasome regulato 98.4 2.1E-05 7.1E-10 73.1 17.8 199 238-436 11-244 (434)
169 3q49_B STIP1 homology and U bo 98.3 1.2E-05 4.2E-10 60.8 13.0 99 337-437 8-106 (137)
170 2xev_A YBGF; tetratricopeptide 98.3 1.2E-05 4.1E-10 60.1 12.7 92 379-471 8-104 (129)
171 1elr_A TPR2A-domain of HOP; HO 98.3 4.8E-06 1.6E-10 62.4 10.3 110 339-451 5-120 (131)
172 3dss_A Geranylgeranyl transfer 98.3 0.00074 2.5E-08 58.9 25.1 183 249-438 92-305 (331)
173 2kck_A TPR repeat; tetratricop 98.3 9.6E-06 3.3E-10 58.7 11.5 96 341-437 9-106 (112)
174 3ro3_A PINS homolog, G-protein 98.3 4.2E-06 1.5E-10 65.4 10.2 137 52-188 10-156 (164)
175 2dba_A Smooth muscle cell asso 98.3 2.5E-05 8.4E-10 59.9 14.3 99 337-438 27-129 (148)
176 1hxi_A PEX5, peroxisome target 98.3 8.5E-06 2.9E-10 60.1 10.2 96 340-437 19-114 (121)
177 3rkv_A Putative peptidylprolyl 98.2 1.6E-05 5.5E-10 62.3 11.8 62 409-471 64-125 (162)
178 3k9i_A BH0479 protein; putativ 98.2 4.2E-06 1.4E-10 61.5 7.4 85 386-471 3-89 (117)
179 1wao_1 Serine/threonine protei 98.2 6.5E-06 2.2E-10 77.1 9.9 116 349-467 17-134 (477)
180 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4.2E-10 62.7 10.1 134 22-155 15-158 (164)
181 2xev_A YBGF; tetratricopeptide 98.1 7.9E-05 2.7E-09 55.5 13.7 95 343-438 7-106 (129)
182 1ihg_A Cyclophilin 40; ppiase 98.1 3.8E-05 1.3E-09 69.2 13.3 91 372-464 272-362 (370)
183 3k9i_A BH0479 protein; putativ 98.1 7.3E-06 2.5E-10 60.1 6.9 86 245-332 4-91 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 4.3E-05 1.5E-09 71.2 13.6 88 374-463 318-405 (457)
185 2hr2_A Hypothetical protein; a 98.1 0.00018 6.3E-09 54.8 14.1 76 410-485 59-149 (159)
186 1wao_1 Serine/threonine protei 98.1 3.3E-05 1.1E-09 72.3 12.3 119 239-362 14-134 (477)
187 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 6.3E-05 2.1E-09 70.1 14.1 130 304-435 270-413 (457)
188 3rkv_A Putative peptidylprolyl 98.1 6.6E-05 2.3E-09 58.7 12.1 66 372-438 62-127 (162)
189 1ihg_A Cyclophilin 40; ppiase 98.0 6.9E-05 2.4E-09 67.5 13.3 91 337-429 272-362 (370)
190 1dce_A Protein (RAB geranylger 98.0 0.00033 1.1E-08 66.8 18.5 135 354-493 89-241 (567)
191 1dce_A Protein (RAB geranylger 98.0 0.00054 1.8E-08 65.4 18.4 173 282-461 45-244 (567)
192 1klx_A Cysteine rich protein B 97.9 0.00052 1.8E-08 51.8 14.4 111 352-473 9-127 (138)
193 2if4_A ATFKBP42; FKBP-like, al 97.9 4.6E-05 1.6E-09 67.8 9.8 59 341-400 233-291 (338)
194 2hr2_A Hypothetical protein; a 97.9 5.6E-05 1.9E-09 57.6 8.7 102 52-154 12-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.9 2.9E-05 9.8E-10 69.2 8.3 149 301-471 178-327 (338)
196 3n71_A Histone lysine methyltr 97.8 0.00011 3.7E-09 68.4 10.7 124 348-471 319-463 (490)
197 1zu2_A Mitochondrial import re 97.8 4.5E-05 1.5E-09 58.0 6.6 88 348-437 12-120 (158)
198 2kat_A Uncharacterized protein 97.8 0.00032 1.1E-08 51.0 10.6 78 357-436 4-81 (115)
199 3n71_A Histone lysine methyltr 97.7 0.00017 5.7E-09 67.2 10.7 128 27-154 320-463 (490)
200 2kat_A Uncharacterized protein 97.7 0.00029 9.9E-09 51.2 9.7 79 391-471 3-81 (115)
201 1na3_A Designed protein CTPR2; 97.7 0.00048 1.7E-08 47.2 10.1 61 410-471 11-71 (91)
202 2l6j_A TPR repeat-containing p 97.7 0.00019 6.5E-09 51.6 8.1 63 374-437 5-67 (111)
203 1klx_A Cysteine rich protein B 97.6 0.0024 8.1E-08 48.1 14.0 17 421-437 110-126 (138)
204 2l6j_A TPR repeat-containing p 97.6 0.00052 1.8E-08 49.3 10.0 84 407-493 3-93 (111)
205 1zu2_A Mitochondrial import re 97.6 0.00023 7.8E-09 54.1 7.4 100 385-488 14-134 (158)
206 3ma5_A Tetratricopeptide repea 97.5 0.00042 1.4E-08 48.8 8.2 85 407-492 6-91 (100)
207 1na3_A Designed protein CTPR2; 97.5 0.0009 3.1E-08 45.8 9.6 79 374-454 10-88 (91)
208 3ma5_A Tetratricopeptide repea 97.4 0.00052 1.8E-08 48.3 7.2 63 265-329 6-68 (100)
209 3ly7_A Transcriptional activat 97.3 0.0052 1.8E-07 53.9 13.9 76 405-484 274-349 (372)
210 3lvg_A Clathrin heavy chain 1; 97.3 6.1E-06 2.1E-10 73.6 -4.5 246 50-323 53-325 (624)
211 3ly7_A Transcriptional activat 97.0 0.012 4E-07 51.7 12.4 74 370-447 274-347 (372)
212 1pc2_A Mitochondria fission pr 96.9 0.0039 1.3E-07 46.8 7.8 64 407-471 31-99 (152)
213 3qww_A SET and MYND domain-con 96.9 0.0067 2.3E-07 55.5 10.7 88 29-116 311-407 (433)
214 3mkq_A Coatomer beta'-subunit; 96.8 0.023 8E-07 57.3 15.4 123 101-256 609-732 (814)
215 3bee_A Putative YFRE protein; 96.8 0.017 5.7E-07 39.6 9.9 64 407-471 5-71 (93)
216 3qww_A SET and MYND domain-con 96.6 0.0059 2E-07 55.8 8.5 25 375-399 342-366 (433)
217 3bee_A Putative YFRE protein; 96.6 0.017 5.8E-07 39.6 8.8 68 370-438 3-73 (93)
218 3qwp_A SET and MYND domain-con 96.6 0.019 6.7E-07 52.5 11.7 105 380-484 294-415 (429)
219 3qwp_A SET and MYND domain-con 96.6 0.01 3.6E-07 54.3 9.8 92 345-436 294-399 (429)
220 1wy6_A Hypothetical protein ST 96.6 0.13 4.4E-06 37.2 14.1 66 408-474 91-156 (172)
221 3mkq_A Coatomer beta'-subunit; 96.5 0.2 6.8E-06 50.5 20.0 128 270-432 633-760 (814)
222 2kc7_A BFR218_protein; tetratr 96.5 0.024 8.3E-07 39.2 9.6 56 381-437 8-64 (99)
223 2kc7_A BFR218_protein; tetratr 96.5 0.032 1.1E-06 38.6 10.0 58 414-472 6-64 (99)
224 3mkq_B Coatomer subunit alpha; 96.4 0.23 8E-06 38.3 14.5 130 309-469 12-141 (177)
225 1pc2_A Mitochondria fission pr 96.3 0.04 1.4E-06 41.3 9.8 82 354-437 14-100 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.3 0.052 1.8E-06 38.1 10.1 64 374-437 6-75 (104)
227 3mkq_B Coatomer subunit alpha; 96.3 0.22 7.4E-06 38.5 13.9 130 273-434 12-141 (177)
228 1wy6_A Hypothetical protein ST 96.2 0.23 7.7E-06 36.0 14.3 138 279-440 20-157 (172)
229 2v5f_A Prolyl 4-hydroxylase su 96.1 0.041 1.4E-06 38.7 8.6 72 50-121 4-76 (104)
230 3u64_A Protein TP_0956; tetrat 96.1 0.056 1.9E-06 45.5 10.4 92 354-447 179-281 (301)
231 4h7y_A Dual specificity protei 96.0 0.079 2.7E-06 39.2 9.6 112 337-451 12-136 (161)
232 4b4t_P 26S proteasome regulato 95.9 0.62 2.1E-05 42.8 17.8 58 165-222 141-203 (445)
233 3u64_A Protein TP_0956; tetrat 95.9 0.64 2.2E-05 39.2 18.3 121 104-228 134-272 (301)
234 3lvg_A Clathrin heavy chain 1; 95.9 0.00022 7.4E-09 63.9 -4.9 237 23-286 61-324 (624)
235 4h7y_A Dual specificity protei 95.9 0.12 4.1E-06 38.3 10.1 107 49-158 11-126 (161)
236 1nzn_A CGI-135 protein, fissio 95.5 0.1 3.5E-06 37.6 8.6 84 353-437 16-103 (126)
237 1nzn_A CGI-135 protein, fissio 95.3 0.13 4.3E-06 37.1 8.5 89 386-478 14-107 (126)
238 4ady_A RPN2, 26S proteasome re 94.5 4.4 0.00015 40.6 30.0 259 206-471 384-657 (963)
239 2ff4_A Probable regulatory pro 93.9 0.51 1.8E-05 42.4 11.1 74 412-486 175-253 (388)
240 3ffl_A Anaphase-promoting comp 93.7 0.66 2.3E-05 35.2 9.4 64 18-81 22-93 (167)
241 4ady_A RPN2, 26S proteasome re 93.4 7.3 0.00025 39.1 35.8 296 130-436 343-657 (963)
242 4b4t_P 26S proteasome regulato 93.2 5 0.00017 36.8 18.1 242 244-490 29-305 (445)
243 3o48_A Mitochondria fission 1 93.0 1.6 5.5E-05 31.6 10.1 73 405-479 37-112 (134)
244 4gns_B Protein CSD3, chitin bi 92.9 7.8 0.00027 38.0 22.5 126 165-293 252-398 (754)
245 1v54_E Cytochrome C oxidase po 92.4 1.7 6E-05 29.5 9.1 48 389-436 26-73 (109)
246 4gns_B Protein CSD3, chitin bi 92.0 1 3.5E-05 44.1 10.6 53 416-469 345-397 (754)
247 2ff4_A Probable regulatory pro 92.0 0.69 2.4E-05 41.6 9.0 65 27-92 182-246 (388)
248 4fhn_B Nucleoporin NUP120; pro 91.7 5.5 0.00019 41.7 16.5 191 271-471 817-1049(1139)
249 1y8m_A FIS1; mitochondria, unk 91.1 3.5 0.00012 30.3 12.4 71 406-478 37-110 (144)
250 1v54_E Cytochrome C oxidase po 90.5 3 0.0001 28.4 10.0 45 356-400 28-72 (109)
251 2y69_E Cytochrome C oxidase su 90.2 3.7 0.00013 29.7 9.1 46 391-436 71-116 (152)
252 3o48_A Mitochondria fission 1 89.8 4.3 0.00015 29.4 9.5 68 370-437 37-107 (134)
253 4fhn_B Nucleoporin NUP120; pro 89.6 8.4 0.00029 40.4 15.6 143 343-492 817-985 (1139)
254 2wpv_A GET4, UPF0363 protein Y 89.4 9.6 0.00033 32.7 16.3 25 160-184 133-157 (312)
255 2y69_E Cytochrome C oxidase su 88.3 5.7 0.0002 28.7 10.0 45 356-400 71-115 (152)
256 3lpz_A GET4 (YOR164C homolog); 87.1 14 0.00048 32.0 17.2 22 53-74 37-58 (336)
257 4b4t_R RPN7, 26S proteasome re 86.6 4.2 0.00015 37.1 10.0 101 52-155 132-237 (429)
258 3ffl_A Anaphase-promoting comp 86.5 5.6 0.00019 30.2 8.7 64 269-332 23-93 (167)
259 1y8m_A FIS1; mitochondria, unk 86.3 8.2 0.00028 28.4 11.4 68 370-437 36-106 (144)
260 3lpz_A GET4 (YOR164C homolog); 86.2 16 0.00054 31.6 18.7 170 267-471 36-215 (336)
261 4b4t_R RPN7, 26S proteasome re 82.4 13 0.00045 33.8 11.3 97 127-223 132-235 (429)
262 1qsa_A Protein (soluble lytic 79.8 44 0.0015 32.1 27.0 55 380-435 292-346 (618)
263 3esl_A Checkpoint serine/threo 78.9 20 0.00069 28.2 9.5 53 389-441 95-148 (202)
264 2wpv_A GET4, UPF0363 protein Y 78.6 31 0.0011 29.6 19.5 177 27-223 24-215 (312)
265 2p58_C Putative type III secre 78.3 6.8 0.00023 26.6 5.6 47 136-188 50-96 (116)
266 3esl_A Checkpoint serine/threo 77.5 21 0.00071 28.1 9.2 54 141-194 94-148 (202)
267 2p58_C Putative type III secre 76.8 15 0.00051 25.0 7.7 49 241-295 50-98 (116)
268 2uwj_G Type III export protein 76.6 14 0.00048 25.1 6.7 51 240-296 48-98 (115)
269 1zbp_A Hypothetical protein VP 76.5 6.5 0.00022 32.6 6.4 55 100-155 6-60 (273)
270 1zbp_A Hypothetical protein VP 75.7 13 0.00044 30.9 7.9 117 25-155 6-129 (273)
271 3txn_A 26S proteasome regulato 74.2 48 0.0016 29.6 26.9 218 236-473 104-344 (394)
272 4b4t_S RPN3, 26S proteasome re 74.0 38 0.0013 31.4 11.4 65 91-155 231-299 (523)
273 3hra_A Ankyrin repeat family p 73.1 31 0.0011 26.8 10.7 115 98-221 9-128 (201)
274 1wdy_A 2-5A-dependent ribonucl 70.3 45 0.0015 27.6 12.6 12 102-113 47-58 (285)
275 3txn_A 26S proteasome regulato 68.0 67 0.0023 28.7 24.5 92 131-222 104-207 (394)
276 4a1g_A Mitotic checkpoint seri 65.0 41 0.0014 25.1 9.7 53 143-195 82-135 (152)
277 4b4t_S RPN3, 26S proteasome re 63.6 37 0.0013 31.5 9.0 66 266-331 231-299 (523)
278 4a1g_A Mitotic checkpoint seri 63.6 44 0.0015 25.0 8.7 52 427-478 84-136 (152)
279 1n11_A Ankyrin; clathrin, BAND 63.0 87 0.003 28.2 13.4 20 97-116 50-69 (437)
280 2nsz_A Programmed cell death p 61.8 40 0.0014 24.3 7.4 65 375-440 9-75 (129)
281 4g8k_A 2-5A-dependent ribonucl 61.2 79 0.0027 27.2 13.0 105 358-478 219-329 (337)
282 3eu9_A Huntingtin-interacting 59.1 31 0.0011 27.7 7.5 53 415-471 181-235 (240)
283 2wvi_A Mitotic checkpoint seri 59.0 56 0.0019 24.7 8.8 50 427-476 79-129 (164)
284 4ets_A Ferric uptake regulatio 58.6 22 0.00075 27.0 5.8 71 319-390 14-86 (162)
285 3kea_A K1L; tropism, ANK repea 57.8 83 0.0028 26.3 10.3 14 360-373 210-223 (285)
286 3jxi_A Vanilloid receptor-rela 56.1 15 0.00051 30.4 5.0 55 98-152 9-72 (260)
287 1qsa_A Protein (soluble lytic 56.0 1.5E+02 0.005 28.5 37.2 115 211-329 229-346 (618)
288 4gq2_M Nucleoporin NUP120; bet 55.6 85 0.0029 32.1 11.1 108 379-492 816-950 (950)
289 2wvi_A Mitotic checkpoint seri 54.8 67 0.0023 24.3 9.3 54 143-196 77-131 (164)
290 2keb_A DNA polymerase subunit 54.2 47 0.0016 22.4 6.4 62 34-97 27-88 (101)
291 2ion_A PDCD4, programmed cell 52.8 37 0.0013 25.4 6.0 65 375-440 11-77 (152)
292 2uwj_G Type III export protein 52.6 52 0.0018 22.4 8.1 78 353-438 21-98 (115)
293 2fe3_A Peroxide operon regulat 52.2 38 0.0013 25.0 6.1 60 329-389 13-72 (145)
294 3eu9_A Huntingtin-interacting 52.2 88 0.003 24.9 9.8 13 27-39 17-29 (240)
295 4aez_C MAD3, mitotic spindle c 50.9 82 0.0028 25.3 8.0 52 143-194 131-183 (223)
296 2jul_A Calsenilin; EF-hand, ca 50.5 1E+02 0.0035 25.2 11.1 135 86-222 106-255 (256)
297 2zu6_B Programmed cell death p 49.0 91 0.0031 26.7 8.6 24 96-119 8-31 (307)
298 2xig_A Ferric uptake regulatio 48.6 47 0.0016 24.7 6.2 61 328-389 17-77 (150)
299 2d2s_A Exocyst complex compone 47.3 1E+02 0.0035 25.1 8.3 22 233-254 93-114 (235)
300 3eyy_A Putative iron uptake re 46.9 45 0.0015 24.6 5.8 60 328-389 9-68 (145)
301 2fe3_A Peroxide operon regulat 46.8 61 0.0021 23.9 6.5 36 173-208 33-68 (145)
302 3ltm_A Alpha-REP4; protein eng 46.6 1E+02 0.0035 24.1 18.8 17 160-176 63-79 (211)
303 2d2s_A Exocyst complex compone 46.1 1.2E+02 0.0041 24.7 8.7 25 57-81 24-48 (235)
304 2ion_A PDCD4, programmed cell 46.0 90 0.0031 23.3 8.4 65 340-405 11-77 (152)
305 2fu4_A Ferric uptake regulatio 45.9 57 0.0019 20.9 5.8 58 434-492 8-66 (83)
306 2xig_A Ferric uptake regulatio 44.5 60 0.002 24.1 6.2 42 167-208 32-73 (150)
307 1k1a_A B-cell lymphoma 3-encod 44.3 1.2E+02 0.0041 24.2 8.9 26 134-159 14-39 (241)
308 3hra_A Ankyrin repeat family p 40.7 1.2E+02 0.0042 23.2 8.4 60 383-443 113-173 (201)
309 1mzb_A Ferric uptake regulatio 40.5 58 0.002 23.6 5.5 16 176-191 33-48 (136)
310 3twr_A Tankyrase-2; ankyrin re 39.9 1.1E+02 0.0038 22.5 8.4 19 98-116 12-30 (165)
311 2nsz_A Programmed cell death p 39.8 1E+02 0.0035 22.1 9.7 65 340-405 9-75 (129)
312 2w57_A Ferric uptake regulatio 39.7 64 0.0022 23.9 5.7 34 176-209 32-65 (150)
313 2keb_A DNA polymerase subunit 39.4 86 0.003 21.1 6.5 58 426-485 27-89 (101)
314 1wdy_A 2-5A-dependent ribonucl 39.3 1.6E+02 0.0054 24.1 13.4 114 97-219 8-125 (285)
315 3l6a_A Eukaryotic translation 39.0 2E+02 0.0069 25.3 11.3 26 233-258 14-39 (364)
316 4ets_A Ferric uptake regulatio 38.3 74 0.0025 24.0 5.9 45 236-280 37-83 (162)
317 1mzb_A Ferric uptake regulatio 38.2 72 0.0025 23.1 5.7 59 329-388 9-68 (136)
318 3bu8_A Telomeric repeat-bindin 38.1 69 0.0024 25.4 5.5 24 132-155 120-143 (235)
319 3eyy_A Putative iron uptake re 38.1 54 0.0018 24.2 5.0 15 177-191 33-47 (145)
320 2zu6_B Programmed cell death p 37.5 1.9E+02 0.0066 24.6 12.0 75 410-485 168-244 (307)
321 4gq2_M Nucleoporin NUP120; bet 37.2 3.6E+02 0.012 27.6 15.0 108 344-457 816-950 (950)
322 3b7b_A Euchromatic histone-lys 37.2 1.5E+02 0.0053 23.4 12.3 46 20-70 12-60 (237)
323 2pnn_A Transient receptor pote 36.8 64 0.0022 26.7 6.0 56 97-152 16-80 (273)
324 3eiq_C Programmed cell death p 36.6 2.2E+02 0.0075 25.0 15.1 59 233-293 56-116 (358)
325 3kae_A CDC27, possible protein 35.9 1.5E+02 0.005 22.8 7.3 52 382-433 71-139 (242)
326 4aez_C MAD3, mitotic spindle c 35.2 1.7E+02 0.006 23.4 8.6 52 426-477 132-184 (223)
327 1ug3_A EIF4GI, eukaryotic prot 34.4 2.3E+02 0.0078 24.6 9.7 23 165-187 15-37 (339)
328 2r9g_A AAA ATPase, central reg 34.2 1.7E+02 0.0058 23.0 8.9 38 350-388 26-63 (204)
329 2b7e_A PRE-mRNA processing pro 33.9 43 0.0015 20.1 3.0 32 425-456 3-35 (59)
330 3ltm_A Alpha-REP4; protein eng 33.6 1.7E+02 0.0058 22.8 19.8 17 372-388 125-141 (211)
331 1bpo_A Protein (clathrin); cla 33.4 2.8E+02 0.0097 25.3 10.5 33 191-223 356-388 (494)
332 2etb_A Transient receptor pote 31.5 1.7E+02 0.0058 23.7 7.7 15 140-154 57-71 (256)
333 2dzn_A Probable 26S proteasome 31.5 1.7E+02 0.0059 22.9 7.7 17 100-116 8-24 (228)
334 4e2i_2 DNA polymerase alpha su 30.2 76 0.0026 20.4 3.8 56 35-92 5-60 (78)
335 3bge_A Predicted ATPase; struc 29.9 2E+02 0.0069 22.5 7.9 38 350-387 19-56 (201)
336 3ltj_A Alpharep-4; protein eng 29.5 1.9E+02 0.0066 22.2 18.1 9 272-280 158-166 (201)
337 3ltj_A Alpharep-4; protein eng 29.3 1.9E+02 0.0066 22.2 17.1 121 125-258 58-178 (201)
338 3ygs_P Procaspase 9; apoptosis 29.0 82 0.0028 21.2 4.3 31 107-141 53-83 (97)
339 3t8k_A Uncharacterized protein 28.8 2E+02 0.0067 22.0 8.0 129 347-475 44-183 (186)
340 3f3f_C Nucleoporin NUP85; stru 28.7 1.3E+02 0.0045 28.2 6.7 27 410-436 518-544 (570)
341 1s6c_A KV4 potassium channel-i 28.6 1.9E+02 0.0064 21.7 11.8 25 197-221 157-181 (183)
342 3bqo_A Telomeric repeat-bindin 28.4 1.1E+02 0.0038 24.0 5.1 69 107-177 94-166 (211)
343 1n11_A Ankyrin; clathrin, BAND 27.7 3.3E+02 0.011 24.3 14.7 48 21-72 16-65 (437)
344 2yru_A Steroid receptor RNA ac 27.6 1.6E+02 0.0056 20.7 7.4 52 67-119 38-89 (118)
345 1bd8_A P19INK4D CDK4/6 inhibit 27.3 1.3E+02 0.0045 21.8 5.8 19 98-116 6-24 (156)
346 1bpo_A Protein (clathrin); cla 27.3 3.6E+02 0.012 24.7 9.5 25 162-186 362-386 (494)
347 3bu8_A Telomeric repeat-bindin 27.1 2.4E+02 0.0082 22.5 12.3 21 416-436 122-142 (235)
348 3t8k_A Uncharacterized protein 27.0 2.1E+02 0.0072 21.9 11.3 91 102-196 14-109 (186)
349 1k1a_A B-cell lymphoma 3-encod 26.5 2.4E+02 0.0081 22.3 11.7 90 20-118 10-103 (241)
350 3eiq_C Programmed cell death p 26.5 3.3E+02 0.011 23.9 14.3 25 95-119 58-82 (358)
351 2w57_A Ferric uptake regulatio 26.4 2E+02 0.0067 21.3 7.1 34 354-387 33-66 (150)
352 2o03_A Probable zinc uptake re 26.0 1.5E+02 0.0051 21.2 5.5 45 131-175 15-59 (131)
353 1oai_A Nuclear RNA export fact 26.0 47 0.0016 19.9 2.3 24 279-302 33-56 (59)
354 2qx5_A Nucleoporin NIC96; mRNA 25.7 4.6E+02 0.016 25.4 20.3 340 96-469 157-564 (661)
355 2o03_A Probable zinc uptake re 25.7 88 0.003 22.5 4.3 44 22-65 16-59 (131)
356 1zl8_A LIN-7; heterodimer, alp 25.6 1E+02 0.0035 17.7 3.8 21 30-50 7-27 (53)
357 4g8k_A 2-5A-dependent ribonucl 25.5 3.1E+02 0.011 23.3 16.7 48 349-407 281-328 (337)
358 3ljn_A Hypothetical protein; a 25.5 3.1E+02 0.011 23.7 8.7 18 99-116 25-42 (364)
359 2rfa_A Transient receptor pote 25.5 2.5E+02 0.0084 22.1 12.2 17 100-116 9-25 (232)
360 2dod_A Transcription elongatio 25.1 91 0.0031 20.3 3.7 32 318-350 16-47 (82)
361 3aji_A 26S proteasome non-ATPa 24.7 2.5E+02 0.0087 22.0 11.0 20 98-117 10-29 (231)
362 3mwm_A ZUR, putative metal upt 24.5 1.3E+02 0.0045 21.8 5.1 45 131-175 18-62 (139)
363 1oxz_A ADP-ribosylation factor 24.4 2.5E+02 0.0085 21.8 8.3 27 37-63 36-62 (186)
364 3jxi_A Vanilloid receptor-rela 24.2 2.7E+02 0.0091 22.4 7.7 56 132-187 8-72 (260)
365 3l6a_A Eukaryotic translation 24.0 3.7E+02 0.013 23.6 12.5 25 129-153 15-39 (364)
366 3ctd_A Putative ATPase, AAA fa 24.0 2.7E+02 0.0093 22.1 8.3 38 350-387 47-84 (213)
367 2fu4_A Ferric uptake regulatio 23.3 1.5E+02 0.0051 18.8 7.0 8 392-399 36-43 (83)
368 3mwm_A ZUR, putative metal upt 23.3 1.4E+02 0.0047 21.7 5.0 44 237-280 19-62 (139)
369 2crb_A Nuclear receptor bindin 23.2 1.7E+02 0.0059 19.5 5.8 27 54-80 18-44 (97)
370 1uzc_A Hypothetical protein FL 23.1 85 0.0029 19.7 3.1 32 318-350 14-45 (71)
371 3gvo_A Pumilio 2, pumilio homo 22.9 3.7E+02 0.013 23.3 10.9 119 377-496 218-351 (351)
372 2f6m_A Suppressor protein STP2 22.6 1.4E+02 0.0049 18.3 4.4 45 410-455 4-48 (65)
373 3gvo_A Pumilio 2, pumilio homo 22.6 1.1E+02 0.0039 26.6 5.2 55 412-471 218-278 (351)
374 4fke_A Aminopeptidase N; zinc 22.2 6.3E+02 0.022 25.7 18.3 89 131-224 691-786 (909)
375 1bd8_A P19INK4D CDK4/6 inhibit 21.9 1.9E+02 0.0065 20.8 5.8 19 133-151 6-24 (156)
376 1ug3_A EIF4GI, eukaryotic prot 21.9 2.7E+02 0.0093 24.1 7.4 25 269-293 14-38 (339)
377 3f3f_C Nucleoporin NUP85; stru 21.7 2.3E+02 0.0077 26.7 6.9 74 141-216 496-569 (570)
378 1wty_A Hypothetical protein TT 21.2 2.2E+02 0.0075 19.9 7.4 26 354-381 4-29 (119)
379 2yru_A Steroid receptor RNA ac 21.1 1.8E+02 0.0062 20.5 4.8 19 348-366 71-89 (118)
380 2cos_A Serine/threonine protei 21.0 1.4E+02 0.0046 17.5 3.3 36 429-469 11-48 (54)
381 2ijq_A Hypothetical protein; s 20.7 2.8E+02 0.0094 20.9 8.7 63 373-436 33-103 (161)
382 3mv2_A Coatomer subunit alpha; 20.2 4.2E+02 0.014 22.8 11.6 28 411-438 210-237 (325)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-40 Score=320.48 Aligned_cols=445 Identities=11% Similarity=-0.015 Sum_probs=381.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
...+.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..++.++. ...++..+++.++.+|.
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKED-------LYNRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC-------GGGTCHHHHHHHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh-------ccccchhHHHHHHHHHH
Confidence 34448999999999999999864 4788899999999999999999998765442 13567889999999999
Q ss_pred cCCCHhHHHHHHHhccCC---------------CCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHH
Q 010853 103 REGYVNEVFRIAEDMPQG---------------KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSI 167 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l 167 (499)
+.|++++|.++|+++... +..++..+|+.++.+|.+.|++++|.++|+++.+.+.. +...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l 240 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQL 240 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHH
Confidence 999999999999964332 22346789999999999999999999999999987432 33333332
Q ss_pred --------------------------------------HHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 168 --------------------------------------VHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 168 --------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
+..|.+.|++++|.++|+++.+. +++..++..++..|.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHh
Confidence 45566788999999999998775 57889999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 210 SDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVL 289 (499)
Q Consensus 210 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 289 (499)
|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.++|
T Consensus 319 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 319 SRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999998643 4467789999999999999999999999998665 347889999999999999999999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 010853 290 NDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 369 (499)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 369 (499)
+++.+.. +.+..+|..++.+|.+.|++++|+++|++++... +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 397 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 397 SKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9998754 5678899999999999999999999999976543 4577899999999999999999999999998865
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
+.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++.+.+ +.+.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 550 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDA 550 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh
Confidence 557899999999999999999999999999765 55677 7899999999999999999999999999876 3478
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhc
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 489 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 489 (499)
.+|..+..+|.+.|++++|.+.++++.+ +.|+ ...+..+..+|.
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHh
Confidence 8999999999999999999999999988 4564 567777766664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-39 Score=313.30 Aligned_cols=442 Identities=10% Similarity=0.013 Sum_probs=369.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
.+.|.+..+...+..+.. ++...|+.++..+.+.|++++|..++.++... .|+..++..++.+|.+.|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~ 132 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-------TGNPNDAFWLAQVYCCTGD 132 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHHTTC
T ss_pred cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-------CCCchHHHHHHHHHHHcCc
Confidence 345556666666655432 57889999999999999999999988777632 3466888999999999999
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc---------------CCCCChhhHHHHHHHH
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR---------------GLTPSLVSYNSIVHGL 171 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------g~~p~~~~~~~l~~~~ 171 (499)
+++|..+|+.+... .++..+++.++.+|.+.|++++|.++|+++... |..++..+|+.++.+|
T Consensus 133 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (597)
T 2xpi_A 133 YARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210 (597)
T ss_dssp HHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence 99999999998653 477889999999999999999999999853222 2234578999999999
Q ss_pred HccCChhHHHHHHHHHHhCCCCCC-cccHH--------------------------------------HHHHHHhcCCCH
Q 010853 172 CKHGGCMRAYQLLEEGIQFGYLPS-EHTYK--------------------------------------VLVEGLCGESDL 212 (499)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--------------------------------------~l~~~~~~~~~~ 212 (499)
.+.|++++|.++|++|.+.+ |+ ...+. .++..|.+.|++
T Consensus 211 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 288 (597)
T 2xpi_A 211 TNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL 288 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchH
Confidence 99999999999999998854 33 22222 225566688999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 213 EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDM 292 (499)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 292 (499)
++|.++|+++.+. +++..++..++..+.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|..+++++
T Consensus 289 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 289 RRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999998754 578889999999999999999999999999987644 7888999999999999999999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC
Q 010853 293 VAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD 372 (499)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 372 (499)
.+.. +.+..++..++..|.+.|++++|.+.|.+++... +.+..+|+.++..+.+.|++++|.++|+++.+.+ +.+
T Consensus 366 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 440 (597)
T 2xpi_A 366 VDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGT 440 (597)
T ss_dssp HHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTC
T ss_pred HhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 8654 6789999999999999999999999999976543 4467799999999999999999999999999875 568
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN--IVCY 446 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~ 446 (499)
..++..++.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 899999999999999999999999999876544 7889999999999999999999999999876 66777 6799
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCC
Q 010853 447 NVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|+
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999998854 3478999999999999987
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7e-32 Score=252.67 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=127.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC---------HHHHHHHHHHHhhCCCCcCHH
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR---------VEEAKEVFNCMLGIGVVADST 374 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 374 (499)
.++.+|.+|++.|++++|+++|++ |...|+.||..+|+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~-M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 345555555555555555555555 3345555555555555555554332 566777777777777777777
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 010853 455 KLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 490 (499)
+.|+.++|.+++++|++.|..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777766654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-28 Score=225.93 Aligned_cols=154 Identities=13% Similarity=0.050 Sum_probs=66.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCC
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREG 105 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (499)
+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...+...+..- +.+..+|..+...+.+.|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCC
Confidence 345555555555555554432 2233444444455555555555554444333321 113344444444444444
Q ss_pred CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 010853 106 YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLE 185 (499)
Q Consensus 106 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 185 (499)
++++|++.|+++.+..+ .+..++..+..++.+.|++++|.+.|+.+.+.... +...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 44444444444433221 22233444444444444444444444444433211 12233333344444444444444444
Q ss_pred HHH
Q 010853 186 EGI 188 (499)
Q Consensus 186 ~~~ 188 (499)
++.
T Consensus 160 ~al 162 (388)
T 1w3b_A 160 KAI 162 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.98 E-value=5.6e-28 Score=223.19 Aligned_cols=383 Identities=13% Similarity=0.055 Sum_probs=329.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHH
Q 010853 57 LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSL 136 (499)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 136 (499)
+...+.+.|++++|...+.++++..|. +...+..+...+.+.|++++|...++...+..+ .+..+|..+..++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHH
Confidence 456778899999999998888775433 456777788899999999999999999877654 5678899999999
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHhcCCCHHHH
Q 010853 137 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCGESDLEKA 215 (499)
Q Consensus 137 ~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 215 (499)
.+.|++++|.+.|+++.+.... +..+|..+..++...|++++|.+.|+++.+.. |+ ...+..+...+...|++++|
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHH
Confidence 9999999999999999987422 45679999999999999999999999998854 54 45677788899999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 216 RKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
.+.|+++... .+.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++....
T Consensus 155 ~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999854 4455678999999999999999999999999987643 6778899999999999999999999998876
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHh
Q 010853 296 KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTT 375 (499)
Q Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 375 (499)
. +.+..++..+...+...|++++|...+.+++... +.+..+|..+..++.+.|++++|...++++.+.. +.+..+
T Consensus 233 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 307 (388)
T 1w3b_A 233 S--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADS 307 (388)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred C--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHH
Confidence 4 5568899999999999999999999999987554 3356688999999999999999999999999875 678889
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
+..+...+...|++++|...++++.+..+ .+..++..+..+|.+.|++++|.+.|+++.+..+. +...|..+...+..
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHH
Confidence 99999999999999999999999986543 36778999999999999999999999999986432 56788888888777
Q ss_pred cCC
Q 010853 456 LSM 458 (499)
Q Consensus 456 ~g~ 458 (499)
.|+
T Consensus 386 ~~~ 388 (388)
T 1w3b_A 386 MQD 388 (388)
T ss_dssp TCC
T ss_pred ccC
Confidence 653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2e-30 Score=242.85 Aligned_cols=185 Identities=15% Similarity=0.165 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC---------CHHHHHHHHHHHhccCCCCCchh
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG---------RIQEALNLLYQVMPQRGYSPGIV 339 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 339 (499)
++.+|++|++.|++++|+++|++|.+.+. .||..+|+.+|.+|.+.+ ..+.|.++|.+ |...|+.||..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~-M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ-MIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHH-HHHTTCCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHH-HHHhCCCCCHH
Confidence 45555555555555555555555555543 555555555555555433 35677777777 45677778888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888887888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
+.|+.++|.++|++|.+.|..|+..||+.++..|..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888877777765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.7e-25 Score=213.46 Aligned_cols=433 Identities=9% Similarity=-0.049 Sum_probs=270.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
....+.+.|++++|+..|+++...+ |++.+|..++.++.+.|++++|...+.++++.-| .+..++..++.++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP------DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh------HHHHHHHHHHHHH
Confidence 3455588999999999999998875 7888999999999999999999998888776432 2567888899999
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHH
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAY 181 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 181 (499)
.+.|++++|...|+.+...++ ++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999887765 3344444455544444333334333333322222222221111111111111111111
Q ss_pred HHHHHHHhCCCC--------C-CcccHHHHHHHHhc---CCCHHHHHHHHHHHHh-----CCC--------CCchhhHHH
Q 010853 182 QLLEEGIQFGYL--------P-SEHTYKVLVEGLCG---ESDLEKARKVLQFMLS-----KKD--------VDRTRICNI 236 (499)
Q Consensus 182 ~~~~~~~~~~~~--------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ 236 (499)
.+...+...... | +...+......+.. .|+++.|..+++++.. ... +.....+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 111111111111 1 12233333333333 6777777777777765 211 112345666
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 316 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (499)
+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++.+.... +.+...+..+...+...|
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhC
Confidence 677777777777777777777766543 6667777777777777777777777777654 445666777777777777
Q ss_pred CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHH
Q 010853 317 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 396 (499)
++++|...+.+.+... +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+
T Consensus 319 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp CTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7777777777765433 2344566667777777777777777777776653 345566777777777777777777777
Q ss_pred HHHhcCCCCC-C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 397 DDIVWPSNIH-D----NYVYAAMIKGLCR---SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 397 ~~~~~~~~~~-~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
+++....... + ...|..+..++.. .|++++|.+.++++.+... .+..++..+...|.+.|++++|...+++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7765432221 1 3367777777777 7777778777777776642 2556677777777777888888777777
Q ss_pred HHH
Q 010853 469 MRK 471 (499)
Q Consensus 469 m~~ 471 (499)
+.+
T Consensus 475 a~~ 477 (514)
T 2gw1_A 475 SAD 477 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=7.3e-23 Score=192.97 Aligned_cols=367 Identities=12% Similarity=0.045 Sum_probs=214.2
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHH
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG 170 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 170 (499)
...+..++..+.+.|++++|+.+|+.+.+..+ .+..++..+..++...|++++|...|+.+.+.+.. +...+..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 33444455555555555555555555443322 23444444555555555555555555555444221 33444445555
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC-c---ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPS-E---HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKN 246 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (499)
+...|++++|.+.|+++.+.. |+ . ..+..+...+.. ..+......+...|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 555555555555555544422 21 1 222222222000 001112334566677
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLY 326 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 326 (499)
+++|...++.+.+..+ .+...+..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...+.
T Consensus 159 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777666543 256666777777777777777777777766543 4556677777777777777777777777
Q ss_pred HHhccCCCCCchhhHHHH------------HHHHHhcCCHHHHHHHHHHHhhCCCCcC-----HHhHHHHHHHHHhcCCh
Q 010853 327 QVMPQRGYSPGIVTYNAV------------LRGLFRLRRVEEAKEVFNCMLGIGVVAD-----STTYAIVIDGLCESNQL 389 (499)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~ 389 (499)
+++... +.+...+..+ ...+...|++++|...|+.+.+.. |+ ...+..+..++.+.|++
T Consensus 236 ~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 236 ECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCH
Confidence 655332 2222233333 667778888888888888887743 33 34677778888888888
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH------------HHhcC
Q 010853 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG------------ACKLS 457 (499)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g 457 (499)
++|...++++....+ .+..+|..+..+|...|++++|.+.++++.+..+. +...+..+..+ |...|
T Consensus 312 ~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 888888888765432 25677888888888888888888888888875322 34455555422 33334
Q ss_pred -----ChHHHHHHHHHH-HHCCCCCC-----------HhHHHHHHHHhcccCCCc
Q 010853 458 -----MKREAYQILREM-RKNGLNPD-----------AVTWRILDKLHGNRGNDF 495 (499)
Q Consensus 458 -----~~~~a~~~~~~m-~~~g~~p~-----------~~~~~~l~~~~~~~g~~~ 495 (499)
+.+++.+.++++ .+ ..|| ...+..+..+|.-.||..
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred CCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 556778888763 33 2333 236777778887777643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=3.3e-23 Score=195.33 Aligned_cols=387 Identities=12% Similarity=0.042 Sum_probs=228.1
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHH
Q 010853 34 VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRI 113 (499)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 113 (499)
.+...+.++.... +.+...+..++..+.+.|++++|...+.++++. .+.+..++..++.++...|++++|...
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG------DPDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444555555542 557788999999999999999999988887753 223688999999999999999999999
Q ss_pred HHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-h---hhHHHHHHHHHccCChhHHHHHHHHHHh
Q 010853 114 AEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS-L---VSYNSIVHGLCKHGGCMRAYQLLEEGIQ 189 (499)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 189 (499)
|+.+.+.++ .+..++..+..++.+.|++++|.+.|+.+.+.. |+ . ..+..+...+...
T Consensus 83 ~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--------------- 144 (450)
T 2y4t_A 83 LTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ--------------- 144 (450)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH---------------
Confidence 999988765 457788999999999999999999999999873 44 3 5666665441110
Q ss_pred CCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH
Q 010853 190 FGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269 (499)
Q Consensus 190 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (499)
.+..+...+...|++++|...++++... .+.+..++..+..++...|++++|...++.+.+... .+..++
T Consensus 145 --------~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 214 (450)
T 2y4t_A 145 --------RLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAF 214 (450)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 0111222333344444444444444421 222333444444445555555555555544444321 244555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH------------HHHHHccCCHHHHHHHHHHHhccCCCCCc
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI------------IFGLLNVGRIQEALNLLYQVMPQRGYSPG 337 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (499)
..+..+|...|++++|...|+++.... +.+...+..+ ...+.+.|++++|...|.+++......+.
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 555555666666666666665555432 2233333332 56666667777777776665543311111
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 010853 338 --IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 415 (499)
Q Consensus 338 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 415 (499)
...+..+..++.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+..+. +...+..+.
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 370 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 2355666666667777777777777666543 345666667777777777777777777777654332 344444444
Q ss_pred HH------------HHhcC-----CHHHHHHHHHH-HHHcCCCCCh-----------hhHHHHHHHHHhcCChHH
Q 010853 416 KG------------LCRSG-----KIHEAVHFLYE-LVDSGVTPNI-----------VCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 416 ~~------------~~~~g-----~~~~a~~~~~~-~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~ 461 (499)
.+ |...| +.+++.+.+++ .... .||. ..|..+..+|...++.++
T Consensus 371 ~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22 33333 45666777776 3332 2221 245555556655555543
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5e-23 Score=197.62 Aligned_cols=426 Identities=10% Similarity=-0.019 Sum_probs=306.1
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
...+......+.+.|++++|...|.+++..- |+..++..+..++.+.|++++|+..++.+.+.++ .+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 77 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHH
Confidence 4567778888999999999999887776542 5678888999999999999999999998887664 4567888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
.+..++...|++++|...|+.+.+.+. ++......++..+........+.+.+..+...+..|+...+..-........
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 889999999999999999999888753 3445555555554444333333333333322222222211111111111111
Q ss_pred CHHHHHHHHHHHHhCCC---------CCchhhHHHHHHHHhc---cCChHHHHHHHHHHHh-----cCC--------CCC
Q 010853 211 DLEKARKVLQFMLSKKD---------VDRTRICNIYLRALCL---IKNPTELLNVLVFMLQ-----TQC--------QPD 265 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~ 265 (499)
.......+...+..... +.+...+......+.. .|++++|...++++.+ ... +.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 11111111111111111 1223344444444444 8999999999999987 311 223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...+.+.+... +.+...+..+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 311 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHH
Confidence 5677888999999999999999999998764 338889999999999999999999999977544 44566888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
..+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999875 456778999999999999999999999999865443 5678899999999999999
Q ss_pred HHHHHHHHHHHcCCCC-C----hhhHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccCC
Q 010853 426 EAVHFLYELVDSGVTP-N----IVCYNVVIDGACK---LSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 493 (499)
+|.+.++++.+..... + ...+..+...+.. .|++++|...++++.+.. +.+...+..+..+|.+.|+
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcC
Confidence 9999999998753221 1 3388899999999 999999999999998743 2356788888899988887
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.8e-22 Score=194.81 Aligned_cols=426 Identities=11% Similarity=0.019 Sum_probs=284.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
...+.+.|++++|++.|+++.... +.++.++..+..++.+.|++++|...+.++++.-+ .+..++..+..++.
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP------DHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------chHHHHHHHHHHHH
Confidence 444488999999999999998864 45788899999999999999999998888876532 25678888999999
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCChhhHHHHHHHHHccCChhHH
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL--TPSLVSYNSIVHGLCKHGGCMRA 180 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~~~~~~a 180 (499)
..|++++|...|+.+.. .+.+. ...+..+...+....|...++.+..... .+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL-NGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc-CCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 99999999999974432 22111 1234455556667788888888866411 11111122333334444555544
Q ss_pred HHHHHHHHhCCCCCCcc-cHHHHHHHHhcC--------CCHHHHHHHHHHHHhCCCCCch-------hhHHHHHHHHhcc
Q 010853 181 YQLLEEGIQFGYLPSEH-TYKVLVEGLCGE--------SDLEKARKVLQFMLSKKDVDRT-------RICNIYLRALCLI 244 (499)
Q Consensus 181 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 244 (499)
...+..... ..+... ....+...+... |++++|..+++++.+.. +.+. .++..+...+...
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 444332211 111111 222222222222 46778888888877432 2222 2455566677778
Q ss_pred CChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL 324 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 324 (499)
|++++|...++...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888887764 346677778888888888888888888877654 45677788888888888888888888
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
+.+.+... +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+
T Consensus 333 ~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 88776544 2345567777788888888888888888887764 44566777888888888888888888887754321
Q ss_pred -----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 405 -----IHDNYVYAAMIKGLCRS----------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 405 -----~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
......+..+..++... |++++|...|+++.+... .+...+..+...|...|++++|.+.|+++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11222344455666666 888888888888887643 35677788888888888888888888888
Q ss_pred HH
Q 010853 470 RK 471 (499)
Q Consensus 470 ~~ 471 (499)
.+
T Consensus 489 l~ 490 (537)
T 3fp2_A 489 AI 490 (537)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.6e-22 Score=191.39 Aligned_cols=395 Identities=7% Similarity=-0.030 Sum_probs=289.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...+.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...+. .+... |+ .....+..+
T Consensus 65 la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~-------~~--~~~~~~~~~ 133 (537)
T 3fp2_A 65 ISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN-------GD--FDGASIEPM 133 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------------------CH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC-------CC--CChHHHHHH
Confidence 3445589999999999999999875 4578889999999999999999998774 33221 11 111234455
Q ss_pred HcCCCHhHHHHHHHhccCCCCC--CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh-hHHHHHHHHHc-----
Q 010853 102 CREGYVNEVFRIAEDMPQGKSV--NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV-SYNSIVHGLCK----- 173 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~----- 173 (499)
...+...+|...++.+....+. +........+..+....+.+.+...+...... .+... ....+...+..
T Consensus 134 ~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 134 LERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp HHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhh
Confidence 5666778899999998765321 11122233455555666666555444332221 12211 22333333222
Q ss_pred ---cCChhHHHHHHHHHHhCCCCCC--------cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010853 174 ---HGGCMRAYQLLEEGIQFGYLPS--------EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 242 (499)
Q Consensus 174 ---~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (499)
.|++++|..+++++.+.. |+ ..++..+...+...|++++|...++.+.... |+...+..+...+.
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 247889999999988743 43 2246667778889999999999999998643 44778888999999
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010853 243 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 322 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 322 (499)
..|++++|...++...+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999887643 67889999999999999999999999998765 456778899999999999999999
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CcCHHhHHHHHHHHHhc----------C
Q 010853 323 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-----VADSTTYAIVIDGLCES----------N 387 (499)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g 387 (499)
..+.+.+... +.+...+..+...+...|++++|...++.+.+... ......+.....++... |
T Consensus 365 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 AFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999987654 44566888889999999999999999999876421 11222344555677777 9
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
++++|...++++.+..+. +..++..+..+|...|++++|.+.|++..+...
T Consensus 443 ~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999876543 677899999999999999999999999998753
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.7e-19 Score=164.32 Aligned_cols=326 Identities=12% Similarity=0.037 Sum_probs=155.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 129 CGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
+..+...+...|++++|...|+.+.+.... +..++..+..++...|++++|...++++.+.. +.+...+..+...+..
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 334444444445555555555444443211 33444444444555555555555555444422 1123344444445555
Q ss_pred CCCHHHHHHHHHHHHhCCCC--CchhhHHH------------HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 010853 209 ESDLEKARKVLQFMLSKKDV--DRTRICNI------------YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN 274 (499)
Q Consensus 209 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 274 (499)
.|++++|...++++.+.... .+...+.. ....+...|++++|...++.+.+..+ .+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 55555555555554422110 11112211 12334444444444444444444332 13344444444
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCH
Q 010853 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRV 354 (499)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 354 (499)
++...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.+.... .+...+..+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~---------- 228 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHY---------- 228 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHH----------
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHH----------
Confidence 5555555555555555544432 33444444444444455555555554444332221 111111100
Q ss_pred HHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 010853 355 EEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----YVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~ 430 (499)
..+. .......+...+...|++++|...++++....+. +. ..+..+..++...|++++|.+.
T Consensus 229 -------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 229 -------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp -------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 0000 0001112245566677777777777776654333 22 1244466677777777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHh
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLH 488 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~ 488 (499)
+++..+.. +.+..++..+...+...|++++|.+.++++.+ +.|+ ...+..+.++.
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 77777653 22566777777777777777777777777766 3454 34444554444
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=8.1e-20 Score=166.55 Aligned_cols=325 Identities=10% Similarity=0.017 Sum_probs=168.2
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHH
Q 010853 51 SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG 130 (499)
Q Consensus 51 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 130 (499)
+..+..+...+...|++++|...+.++++.. +.+..++..+...+...|++++|...++.+.+..+ .+..++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 75 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHH
Confidence 3445555555555555555555555444321 11334455555555555555555555555444332 2334444
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCC----ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTP----SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGL 206 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 206 (499)
.+..++...|++++|...|+...+. .| +...+..+..... ...+..+...+
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 4555555555555555555555443 22 1122222211000 00011224566
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 010853 207 CGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 286 (499)
...|++++|..+++++.+. .+.+...+..+...+...|++++|...++...+..+ .+...+..+...+...|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 7777888888888777643 344556777777777888888888888887777653 36777888888888889999998
Q ss_pred HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 287 KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 366 (499)
..++...+.. +.+...+..+.... .......+...+...|++++|...++.+.+
T Consensus 209 ~~~~~a~~~~--~~~~~~~~~~~~~~------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 209 SEVRECLKLD--QDHKRCFAHYKQVK------------------------KLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHH------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--ccchHHHHHHHHHH------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888887654 23333322111000 011111223334444555555555554444
Q ss_pred CCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 367 IGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 367 ~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.. +.+. ..+..+..++...|++++|...++++.+..+. +..+|..+..++...|++++|.+.|+++.+.
T Consensus 263 ~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 263 TE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32 1111 12233444555555555555555555443221 3445555555555555555555555555544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-19 Score=161.72 Aligned_cols=292 Identities=11% Similarity=0.022 Sum_probs=212.3
Q ss_pred CCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHH
Q 010853 193 LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV 272 (499)
Q Consensus 193 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 272 (499)
..+...+..+...+...|++++|..+++++... .+.+...+..++..+...|++++|...++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 345555666666666667777777777666643 3334445555666666677777777777776665432 56677777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc
Q 010853 273 INGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 351 (499)
Q Consensus 273 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 351 (499)
...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888887654 4456777888888888888888888888866544 23345566677788888
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHhcCC
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--------NIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 423 (499)
|++++|...++++.+.. +.+..++..+...+...|++++|...++++.... ......++..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888888765 5567788888888888888888888888876431 12345678888889999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHh-cccCCC
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLH-GNRGND 494 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~-~~~g~~ 494 (499)
+++|.+.+++..+.... +...+..+...+...|++++|.+.++++.+ +.| +...+..+..++ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 99999999998887533 667888888889999999999999998876 445 566777777777 455554
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=9.4e-19 Score=157.49 Aligned_cols=287 Identities=8% Similarity=-0.016 Sum_probs=167.8
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 203 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 203 (499)
.+...+..+...+...|++++|.++|+.+.+.... +...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455566667777777777777777777766332 44556666677777777777777777776643 22456666677
Q ss_pred HHHhcCC-CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 204 EGLCGES-DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 204 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
..+...| ++++|...++++... .+.+...+..+...+...|++++|...++...+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 777777777777643 2333445666666666666666666666666655432 334455566666666777
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC-------CCCchhhHHHHHHHHHhcCCHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVTYNAVLRGLFRLRRVE 355 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~ 355 (499)
++|...++++.+.. +.+...+..+...+...|++++|...+.+.+.... .+....++..+..++...|+++
T Consensus 176 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 77777776666543 44556666666666666666666666665543211 0122334555555555555555
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
+|...+++..+.. +.+..++..+..++...|++++|...++++.+..+. +...+..+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHH
Confidence 5555555555433 234444555555555555555555555555433221 334444444444
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=5.7e-17 Score=153.97 Aligned_cols=368 Identities=9% Similarity=-0.051 Sum_probs=295.2
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc----C
Q 010853 33 DVAYKVFDEMRHCGVLPNSLTYSVLVRGVLR----TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR----E 104 (499)
Q Consensus 33 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 104 (499)
..++..++...+.| ++..+..+...+.. .+++++|...+.+..+. + +...+..+...|.. .
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~---~~~a~~~Lg~~y~~g~g~~ 92 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----G---YTPAEYVLGLRYMNGEGVP 92 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T---CHHHHHHHHHHHHHTSSSC
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHcCCCCC
Confidence 34566677766654 77888888888888 89999999988777653 1 46678888888988 8
Q ss_pred CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCC
Q 010853 105 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK----HGG 176 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~ 176 (499)
+++++|.+.|+...+.+ +..++..|...|.. .+++++|...|++..+.| +...+..+...|.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999987765 44666778888887 789999999999998875 67778888888877 789
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----cCChH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL----IKNPT 248 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 248 (499)
+++|.+.|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...+.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999988864 56777788888877 899999999999988654 44566667777765 78999
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc-----CCHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-----GRIQ 319 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~ 319 (499)
+|..+++...+.+ +...+..+...|.. .++.++|...|+...+.+ +...+..+...|... ++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 9999999988775 45566777777777 889999999999988743 556677777888776 8999
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhH
Q 010853 320 EALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEA 392 (499)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 392 (499)
+|...+.+..+.. +...+..+...+...| ++++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 314 ~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 314 QAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998876432 4456666777776656 7899999999998875 67788888888888 8999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 010853 393 KRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVT 440 (499)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 440 (499)
...+++..+.+ +...+..|...|.. .+++++|...|++..+.+..
T Consensus 387 ~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 387 AIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999998764 56678888888888 89999999999999988643
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.9e-17 Score=157.66 Aligned_cols=413 Identities=8% Similarity=0.021 Sum_probs=280.4
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhcc
Q 010853 39 FDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP 118 (499)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 118 (499)
|++..+.. +-+...|..++.. .+.|++++|..+++++++..| -+...|...+..+.+.|++++|..+|++..
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P------~~~~~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP------SSGRFWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444432 3366677777774 667788888777776665433 245677777777788888888888888877
Q ss_pred CCCCCCchhhHHHHHHHH-HhcCChhhHHH----HHHHHHhc-CCCC-ChhhHHHHHHHHHc---------cCChhHHHH
Q 010853 119 QGKSVNEEFACGHMIDSL-CRSGRNHGASR----VVYVMRKR-GLTP-SLVSYNSIVHGLCK---------HGGCMRAYQ 182 (499)
Q Consensus 119 ~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~~~-g~~p-~~~~~~~l~~~~~~---------~~~~~~a~~ 182 (499)
... |+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..
T Consensus 74 ~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 74 MKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp TTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred hcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 765 4555666555422 34566666654 56555443 4443 34566666655543 577788888
Q ss_pred HHHHHHhCCCCCCc---ccHHHHHHHH-------------hcCCCHHHHHHHHHHH------HhCC---CCCc-------
Q 010853 183 LLEEGIQFGYLPSE---HTYKVLVEGL-------------CGESDLEKARKVLQFM------LSKK---DVDR------- 230 (499)
Q Consensus 183 ~~~~~~~~~~~~~~---~~~~~l~~~~-------------~~~~~~~~a~~~~~~~------~~~~---~~~~------- 230 (499)
+|++.++. |.. ..|....... ...+++..|..+++.+ .+.. .+|.
T Consensus 152 ~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 152 VYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 88887762 322 2222221110 1345567777766652 2221 2332
Q ss_pred -hhhHHHHHHHHhc----cCCh----HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh-------cCCHH-------HHHH
Q 010853 231 -TRICNIYLRALCL----IKNP----TELLNVLVFMLQTQCQPDVITLNTVINGFCK-------MGRIE-------EALK 287 (499)
Q Consensus 231 -~~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~ 287 (499)
...|...+..... .++. +++..+|++.....+ .+...|..+...+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 1345554433222 1232 367788888887643 367788888888775 78877 8999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-h-hhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-I-VTYNAVLRGLFRLRRVEEAKEVFNCML 365 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 365 (499)
+|++..+.-. +.+...|..++..+.+.|++++|..+|++++.. .|+ . ..|...+..+.+.|++++|..+|+...
T Consensus 308 ~~~~Al~~~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 308 IYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHTTTTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999986321 456888999999999999999999999998754 443 2 478888888889999999999999998
Q ss_pred hCCCCcCHHhHHHHHHH-HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-
Q 010853 366 GIGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-TPN- 442 (499)
Q Consensus 366 ~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~- 442 (499)
+.. +.+...+...... +...|+.++|..+|+...+..+ .+...|..++..+.+.|+.++|..+|++....+. .|+
T Consensus 384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 863 2233333333222 3468999999999999986643 3678899999999999999999999999998743 222
Q ss_pred -hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 443 -IVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 443 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...|...+......|+.+.+..+.+++.+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34788888888889999999999999876
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.85 E-value=4.2e-19 Score=158.43 Aligned_cols=291 Identities=14% Similarity=0.126 Sum_probs=136.1
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVD 99 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (499)
.+...++-+.|++++|.+.++++.. +.+|+.++.++.+.|++++|+..|.+ .+|..+|..++.
T Consensus 7 ~a~~~ll~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik-----------a~D~~~y~~V~~ 69 (449)
T 1b89_A 7 SAVQVLIEHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc-----------CCCHHHHHHHHH
Confidence 3455566888999999999999933 35899999999999999999987633 246778999999
Q ss_pred HHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 010853 100 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 179 (499)
.+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988877664 3557788899999999999999998885 3788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHh
Q 010853 180 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQ 259 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (499)
|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 99999976 47999999999999999999999988 36789999999999999999996655432
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHhccCCCCC-
Q 010853 260 TQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV--GRIQEALNLLYQVMPQRGYSP- 336 (499)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~- 336 (499)
...+.....++..|.+.|.+++|..+++...... +.....|+.+.-+|++- ++..+.++.|. ..-+++|
T Consensus 204 ---~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~ 275 (449)
T 1b89_A 204 ---VVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKV 275 (449)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHH
T ss_pred ---HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHH
Confidence 2334445578999999999999999999998655 45667777776666653 44445555443 3444444
Q ss_pred -----chhhHHHHHHHHHhcCCHHHHHHHH
Q 010853 337 -----GIVTYNAVLRGLFRLRRVEEAKEVF 361 (499)
Q Consensus 337 -----~~~~~~~ll~~~~~~~~~~~a~~~~ 361 (499)
+...|..+...|...++++.|....
T Consensus 276 ~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 276 LRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 4667888998999999999887753
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.8e-16 Score=150.57 Aligned_cols=353 Identities=8% Similarity=-0.050 Sum_probs=294.4
Q ss_pred CHHhHHHHHHHHHc----CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCCh
Q 010853 90 NNAAFANLVDSLCR----EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSL 161 (499)
Q Consensus 90 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~g~~p~~ 161 (499)
+...+..+...|.. .+++++|+..|+...+.+ +..++..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 56677778888887 899999999999987764 45677778888888 899999999999998875 67
Q ss_pred hhHHHHHHHHHc----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc----CCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 162 VSYNSIVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 162 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 789999999999998865 55677778888876 789999999999998764 5667
Q ss_pred HHHHHHHHhc----cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHH
Q 010853 234 CNIYLRALCL----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTF 305 (499)
Q Consensus 234 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 305 (499)
+..+...|.. .++.++|..+++...+.+ +...+..+...|.. .+++++|..+|++..+.+ +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 7788888877 899999999999998875 56677788888876 789999999999998743 55667
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCCcCHHhH
Q 010853 306 TTIIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTY 376 (499)
Q Consensus 306 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 376 (499)
..+...|.. .++.++|+..|.+.... -+...+..+...+... +++++|..+|++..+.| +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 777777777 89999999999997643 2445666777777776 89999999999999876 45677
Q ss_pred HHHHHHHHhcC---ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 377 AIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 377 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
..+...|...| ++++|.+.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 77888887766 7899999999998763 67788889999988 899999999999999875 56788888
Q ss_pred HHHHHh----cCChHHHHHHHHHHHHCCC
Q 010853 450 IDGACK----LSMKREAYQILREMRKNGL 474 (499)
Q Consensus 450 ~~~~~~----~g~~~~a~~~~~~m~~~g~ 474 (499)
...|.. .+++++|...|++..+.|.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888988 8999999999999988664
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=4.3e-19 Score=162.38 Aligned_cols=290 Identities=13% Similarity=0.006 Sum_probs=196.1
Q ss_pred cCChhHHHH-HHHHHHhCCC---CCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHH
Q 010853 174 HGGCMRAYQ-LLEEGIQFGY---LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTE 249 (499)
Q Consensus 174 ~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (499)
.|++++|.+ .+++...... ..+...+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554332211 112344555666666666666666666666543 23344556666666666666666
Q ss_pred HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHH---------------HHHHHHc
Q 010853 250 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTT---------------IIFGLLN 314 (499)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 314 (499)
|...++...+..+ .+..++..+..++...|++++|...++++.... +.+...+.. .+..+..
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 6666666665543 255666667777777777777777777766543 122222211 1233337
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 010853 315 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 394 (499)
Q Consensus 315 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 394 (499)
.|++++|...+.+++......++..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888999999998877655333357788888889999999999999999988764 4567888999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHHHhcCChHHHHH
Q 010853 395 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP----------NIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
.++++....+ .+..++..+..+|...|++++|...|+++.+..... ...+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999876543 367788999999999999999999999988753221 15788999999999999999998
Q ss_pred HHHHH
Q 010853 465 ILREM 469 (499)
Q Consensus 465 ~~~~m 469 (499)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.4e-16 Score=152.94 Aligned_cols=393 Identities=10% Similarity=0.044 Sum_probs=281.8
Q ss_pred CHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHH
Q 010853 90 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVH 169 (499)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 169 (499)
+...|..++. +.+.|++++|..+|+++.+..+ .+...|..++..+.+.|++++|..+|++.... .|+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 5678888888 4789999999999999998765 56778999999999999999999999999987 478777777775
Q ss_pred HH-HccCChhHHHH----HHHHHHh-CCCCC-CcccHHHHHHHHhc---------CCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 170 GL-CKHGGCMRAYQ----LLEEGIQ-FGYLP-SEHTYKVLVEGLCG---------ESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 170 ~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
.. ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34677777665 7776654 35544 34566666665543 6889999999999986321111234
Q ss_pred HHHHHHHH-------------hccCChHHHHHHHHHHH------hcC---CCCC--------HhhHHHHHHHHHhc----
Q 010853 234 CNIYLRAL-------------CLIKNPTELLNVLVFML------QTQ---CQPD--------VITLNTVINGFCKM---- 279 (499)
Q Consensus 234 ~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~---- 279 (499)
|....... ...++++.|..++..+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 44332211 13445667776666532 221 2333 23455554433221
Q ss_pred CCH----HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHhccCCCCCchhhH
Q 010853 280 GRI----EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-------VGRIQ-------EALNLLYQVMPQRGYSPGIVTY 341 (499)
Q Consensus 280 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 341 (499)
++. ..+..+|++..... +.+...|..++..+.+ .|+++ +|..++++.+... .+.+...|
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-CcccHHHH
Confidence 232 47778888888754 5578888888887775 68876 8999999976421 23457788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC-H-HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-H
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD-S-TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-L 418 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~ 418 (499)
..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHH
Confidence 88889999999999999999999985 443 3 57888888899999999999999999865432 33333332222 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC--HhHHHHHHHHhcccCC
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL-NPD--AVTWRILDKLHGNRGN 493 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~--~~~~~~l~~~~~~~g~ 493 (499)
...|++++|..+|++..+... .+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+....+.|+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 468999999999999988742 3678899999999999999999999999988632 332 3478777777777776
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.8e-18 Score=158.19 Aligned_cols=307 Identities=9% Similarity=-0.041 Sum_probs=189.5
Q ss_pred HHcCCCHhHHHH-HHHhccCCCC---CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 010853 101 LCREGYVNEVFR-IAEDMPQGKS---VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 101 ~~~~~~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 176 (499)
+...|++++|.. .++....... ..+...+..+...+.+.|++++|...|+.+.+.... +..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 334578888887 7776554432 123556777888888889999999999888887433 66778888888888899
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 177 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
+++|...++++.+.. +.+..++..+...+...|++++|...++++....... ...+...... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHH-------hh-------
Confidence 999998888887754 2356777888888888888888888888887543221 1111111000 00
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 336 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 336 (499)
...+. ..+..+.. +...|++++|...++++.+.....++..++..+...+...|++++|...+.+.+... +.
T Consensus 178 ----~~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~ 249 (368)
T 1fch_A 178 ----GAGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN 249 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ----hhccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 00000 01111222 226667777777777766543211146667777777777777777777777665443 33
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC----------
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---------- 406 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 406 (499)
+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++....+..
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 45566677777777777777777777776653 4456667777777777777777777777765432211
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
...+|..+..+|...|++++|..++++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156777777777777777777776654
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=4.2e-18 Score=155.56 Aligned_cols=264 Identities=10% Similarity=-0.033 Sum_probs=173.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
+..+...+.+.|++++|..+|+++... .+.+..++..+...+...|++++|...+++..+..+ .+..++..+..+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence 444444444444444444444444432 222334444455555555555555555555544432 245666677777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPD----------AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
.|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+.+++......++..++..+...+
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 777777777777766532 111 22233457778888888888888888776653333677888888888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+..+. +..+|..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence 88899999999999888764 556788888999999999999999999988765433 5778888999999999999999
Q ss_pred HHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 429 HFLYELVDSGVT-----------PNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 429 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
+.|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999988864311 1356788899999999999888877654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=2.1e-18 Score=157.59 Aligned_cols=258 Identities=10% Similarity=-0.064 Sum_probs=208.9
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 010853 230 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 309 (499)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (499)
+...+......+.+.|++++|...++.+.+..+. +..++..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 3446888899999999999999999999987643 78899999999999999999999999998765 56788999999
Q ss_pred HHHHccCCHHHHHHHHHHHhccCCCCCc--------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHhHHHH
Q 010853 310 FGLLNVGRIQEALNLLYQVMPQRGYSPG--------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIV 379 (499)
Q Consensus 310 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 379 (499)
..|...|++++|...+.+++....-.++ ...+..+...+...|++++|...++++.+.. +. +..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHH
Confidence 9999999999999999997754311111 1222344778889999999999999999864 33 68899999
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCh
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (499)
...|...|++++|...++++.+..+. +..+|..+..+|...|++++|.+.|+++.+.... +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999876543 6789999999999999999999999999987533 578899999999999999
Q ss_pred HHHHHHHHHHHHCCC---C--------CCHhHHHHHHHHhcccCC
Q 010853 460 REAYQILREMRKNGL---N--------PDAVTWRILDKLHGNRGN 493 (499)
Q Consensus 460 ~~a~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~ 493 (499)
++|...++++.+..- . .+...|..+..++...|+
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 999999999876210 1 136788888888877775
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=8.5e-19 Score=156.47 Aligned_cols=284 Identities=11% Similarity=0.087 Sum_probs=132.0
Q ss_pred ccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCCh
Q 010853 63 RTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRN 142 (499)
Q Consensus 63 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 142 (499)
+.|+.++|.+.++++ + ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++
T Consensus 15 ~~~~ld~A~~fae~~----~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~ 77 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----N-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 77 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----C-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCH
Confidence 567788898755433 2 2358899999999999999999999753 5667899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 143 HGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
++|..+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 78 EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 78 EELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 9999988877764 4567889999999999999999988874 377789999999999999999999999977
Q ss_pred HhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH
Q 010853 223 LSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 302 (499)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 302 (499)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~a 207 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHA 207 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCH
Confidence 36999999999999999999999988 278999999999999999999966555432 333
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhh-CCCCc------CHHh
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-IGVVA------DSTT 375 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~ 375 (499)
.-...++..|.+.|.+++|..+++..+... +-....|+.+.-.+++- .+++..+.++...+ .+++| +...
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345578899999999999999999977544 33455666666556553 34444444433322 23333 4567
Q ss_pred HHHHHHHHHhcCChhhHHHHH
Q 010853 376 YAIVIDGLCESNQLDEAKRFW 396 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~ 396 (499)
|..++..|..-++++.|....
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHHHH
Confidence 888999999999999887643
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3e-17 Score=147.46 Aligned_cols=263 Identities=8% Similarity=-0.081 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 199 YKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 199 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...+++..+..+ .+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 344444444445555555555444432 222333444444555555555555555555544432 245556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTI--------------IF-GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
.|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...+.+.+... +.+...+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 177 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHAS 177 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHHH
Confidence 666666666666665543 2222222222 22 3677888899999888876544 345677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+..++...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc
Confidence 8888999999999999999988764 456788889999999999999999999998765433 67788999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 424 IHEAVHFLYELVDSGVTP-----------NIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
+++|.+.++++.+..... +...|..+..++...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998764332 4678889999999999999999988764
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=1.6e-14 Score=144.19 Aligned_cols=410 Identities=12% Similarity=0.072 Sum_probs=272.7
Q ss_pred CChhhHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhH
Q 010853 17 PPVASLTSALAITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 94 (499)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 94 (499)
.+...|..++...+...+ ++.++.....+ .-++.--+..+++|...|.+.+|.++++++.-. ...+.-+...-
T Consensus 951 ~d~~lW~~vl~~~n~~RR--~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPYRR--PLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcCCcHHHH--HHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHH
Confidence 445556666644443322 23333222211 235555677788888888888888888777632 11223344555
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 174 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 174 (499)
+.++....+. +..+..+..+.+.... ..-+...+...|.+++|..+|++... .....+.++. ..
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i 1089 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HI 1089 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HH
Confidence 5566666555 4455555555554211 22366777888888888888887531 2222333332 66
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
+++++|.++.++. -+..+|..+..++...|++++|...|.+. .+...|..++.++.+.|++++|.+++
T Consensus 1090 ~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1090 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7788888888754 24677888888888889999888888553 45567777888888889999998888
Q ss_pred HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC
Q 010853 255 VFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGY 334 (499)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 334 (499)
....+... +....+.++.+|++.+++++...+. + .++...|..+...|...|++++|...|...
T Consensus 1158 ~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------ 1221 (1630)
T 1xi4_A 1158 QMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 1221 (1630)
T ss_pred HHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------
Confidence 87776643 3333335888888888887544432 2 456667777888888899999998888762
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 414 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (499)
..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..+
T Consensus 1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A 1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence 37888888888889999998888876 25578888888888888888888876643 2355567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCC------CHhHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL--SMKREAYQILREMRKNGLNP------DAVTWRILDK 486 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~p------~~~~~~~l~~ 486 (499)
+..|.+.|.+++|+.+++...... +-....|+-+...|++. ++.-++.+.|..-. ++.| +...|..++-
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHH
Confidence 888899999999999998877654 33445666666666653 33344444443221 2222 4567888888
Q ss_pred HhcccCC
Q 010853 487 LHGNRGN 493 (499)
Q Consensus 487 ~~~~~g~ 493 (499)
+|.+.|+
T Consensus 1364 LY~~~~e 1370 (1630)
T 1xi4_A 1364 LYDKYEE 1370 (1630)
T ss_pred HHHhccc
Confidence 8877665
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.7e-14 Score=144.12 Aligned_cols=378 Identities=12% Similarity=0.108 Sum_probs=287.2
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
......+...|.+.+|++++++....+- .-+....+.++.+..+. +..+...+. .+.. ......+
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI----~kLd--------~~d~~eI 1055 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI----NRLD--------NYDAPDI 1055 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH----HHhh--------hccHHHH
Confidence 4446666899999999999999985421 12445666677766666 455554432 2221 1113348
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
...+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++.. +..+|..+..++...|++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence 8889999999999999999742 1122233332 6789999999998652 578999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHH
Q 010853 178 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 257 (499)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (499)
++|...|.+. -|...|..++.++.+.|++++|.+++....+.. +++.....++.+|++.+++++...+.
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 9999999663 467788999999999999999999999887644 33334445899999999988655443
Q ss_pred HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc
Q 010853 258 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 337 (499)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 337 (499)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+.+. .+
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA-------~n 1249 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-------NS 1249 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CC
Confidence 1 346667778999999999999999999974 37999999999999999999999874 35
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++...... .-....|+.+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 689999999999999999998876643 4466778899999999999999999999887555 3355577777777
Q ss_pred HHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCChHHHHH
Q 010853 418 LCRS--GKIHEAVHFLYELVDSGVTP------NIVCYNVVIDGACKLSMKREAYQ 464 (499)
Q Consensus 418 ~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~ 464 (499)
|++- ++..++.++|..-. ++++ +...|..++..|.+.|+++.|..
T Consensus 1324 yaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7765 34445555554322 2222 45679999999999999999883
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=6.4e-17 Score=145.24 Aligned_cols=279 Identities=13% Similarity=-0.008 Sum_probs=146.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 010853 126 EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG 205 (499)
Q Consensus 126 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (499)
...+..+...+...|++++|..+|+++.+.... +...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344455556666666666666666666655322 44556666666666666666666666665532 1244555566666
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHH-HH-HHHhcCCHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTV-IN-GFCKMGRIE 283 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 283 (499)
+...|++++|...++++..... .....+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 6666666666666666654321 111111111000 0000111111 11 244455555
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 284 EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNC 363 (499)
Q Consensus 284 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 363 (499)
+|...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...+++
T Consensus 156 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 231 (327)
T 3cv0_A 156 ECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNR 231 (327)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555433 3345555555555555566666655555544332 22344555555666666666666666666
Q ss_pred HhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010853 364 MLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-----------DNYVYAAMIKGLCRSGKIHEAVHFLY 432 (499)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~ 432 (499)
+.+.. +.+..++..+..++...|++++|...++++....+.. +..+|..+..++...|++++|..+++
T Consensus 232 a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 232 ALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55543 3345556666666666666666666666665432221 34566666677777777777766665
Q ss_pred HH
Q 010853 433 EL 434 (499)
Q Consensus 433 ~~ 434 (499)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.7e-16 Score=138.93 Aligned_cols=249 Identities=10% Similarity=0.023 Sum_probs=104.9
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChH
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 248 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (499)
....|++..|+...+..... .|+ ......+.++|...|+++.|...++. ..+|+...+..+...+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33455555555555544322 122 12333445555555555555543322 12223334444444444444445
Q ss_pred HHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555554444433222 223333333444444555555444443 12334444444444444444444444444
Q ss_pred HhccCCCCCchhhH---HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 328 VMPQRGYSPGIVTY---NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 328 ~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
+.... |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++...|++++|...++++....+
T Consensus 156 ~~~~~---p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQD---EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHC---TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhC---cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33221 221100 111122222344444444444444432 33444444444444444444444444444443322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDS 437 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 437 (499)
. +..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 2 33344444444444444433 33444444443
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=1.7e-16 Score=138.98 Aligned_cols=256 Identities=11% Similarity=0.063 Sum_probs=156.3
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCch--hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 205 GLCGESDLEKARKVLQFMLSKKDVDRT--RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
.....|++..|+..++.... ..|+. .....+.++|...|+++.|...++. .-+|+..++..+...+...++.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 34456777777776665532 22222 2445556677777777777665533 1244566666667777777777
Q ss_pred HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 283 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 362 (499)
Q Consensus 283 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 362 (499)
++|++.++++...+..+.+...+..+...+...|++++|++.+.+ +.+...+..+...+.+.|++++|...++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777665432133455556666677777777777776644 3455566666777777777777777777
Q ss_pred HHhhCCCCcCHHhH---HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 363 CMLGIGVVADSTTY---AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 363 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
.+.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...|+.+..++...|++++|.+.|+++.+...
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 776653 332211 1222333445677777777777765533 3666677777777777777777777777776643
Q ss_pred CCChhhHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHh
Q 010853 440 TPNIVCYNVVIDGACKLSMKRE-AYQILREMRKNGLNPDAV 479 (499)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~ 479 (499)
. +..++..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 2 55667777777777777654 4567776665 345443
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=7.8e-19 Score=169.33 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=124.9
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 336 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG---IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 336 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
.-..||+++|.+|++.|++++|.++|.+|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988764 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HhHHHHHH
Q 010853 413 AMIKGLCRSGK-IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD------AVTWRILD 485 (499)
Q Consensus 413 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~l~ 485 (499)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999987 478899999999999999999999888766553 455555555 4456655 55566666
Q ss_pred HHhcccC
Q 010853 486 KLHGNRG 492 (499)
Q Consensus 486 ~~~~~~g 492 (499)
+.|.+.|
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777655
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-15 Score=144.44 Aligned_cols=398 Identities=11% Similarity=-0.040 Sum_probs=239.8
Q ss_pred CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC---CccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCC-----
Q 010853 49 PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED---LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----- 120 (499)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 120 (499)
.....|+.+...+...|++++|+..+.+.++-.+...+ ..-...+|+.+..+|...|++++|...++...+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34667999999999999999999999988776554322 1223567889999999999999998888775421
Q ss_pred --CCCCchhhHHHHHHHHHh--cCChhhHHHHHHHHHhcCCCCChhhHHHHHHH---HHccCChhHHHHHHHHHHhCCCC
Q 010853 121 --KSVNEEFACGHMIDSLCR--SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHG---LCKHGGCMRAYQLLEEGIQFGYL 193 (499)
Q Consensus 121 --~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 193 (499)
.......++..+..++.. .+++++|.+.|++..+..+. ++..+..+..+ +...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 111223445555445544 45789999999998887432 44455544444 3456777888888888776431
Q ss_pred CCcccHHHHHHHHh----cCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH
Q 010853 194 PSEHTYKVLVEGLC----GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269 (499)
Q Consensus 194 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (499)
.+...+..+...+. ..+++++|.+++++.... .+....++..+...+...|++++|...+.+..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 23344444444433 356778888888887743 4455667777888888888888888888888776533 45556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..+..+|...+... .... ...... .....+..+.|...+.+..... +.+..++..+...+.
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~--~~~~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR--ENGMYG------KRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC--------C------HHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---------hhHH--HHHHHH------HHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHH
Confidence 66655553221111 0000 000000 0111223567777777766544 344567788888999
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHH--hHHHHHH-HHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADST--TYAIVID-GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
..|++++|...|++..+....+... .+..+.. .....|++++|...+++..+..+ +..... +..+.
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHH
Confidence 9999999999999988765333221 2223322 24567899999999999876543 322221 22344
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTW 481 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 481 (499)
+.+++++....+ +.+..+|..+...|...|++++|++.|++.++.| ..|+..+|
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 556666666654 3367899999999999999999999999998754 23454444
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=162.22 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=108.1
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
..-..||++||++|++.|++++|.++|++|. ..|..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3456789999999999999999999998875 4578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 447 NVVIDGACKLSMK-REAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 447 ~~l~~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
+++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~ 244 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccC
Confidence 9999999999985 789999999999999999999994443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.2e-14 Score=137.61 Aligned_cols=383 Identities=9% Similarity=-0.055 Sum_probs=234.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCC-c-cCH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHC--------GVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL-S-VNN 91 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-~~~ 91 (499)
+..++...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+.++.+-.+...+. . ...
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 344558899999999999987542 112245678999999999999999999998887755543221 1 234
Q ss_pred HhHHHHHHHHHc--CCCHhHHHHHHHhccCCCCCCchhhHHHHHHH---HHhcCChhhHHHHHHHHHhcCCCCChhhHHH
Q 010853 92 AAFANLVDSLCR--EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS---LCRSGRNHGASRVVYVMRKRGLTPSLVSYNS 166 (499)
Q Consensus 92 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~ 166 (499)
.++..+..++.. .+++++|++.|++..+..+ .+...+..+..+ +...++.++|++.+++..+.... +..++..
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~ 214 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHH
Confidence 566666666554 4579999999999887664 334455444444 44568889999999998877432 4556665
Q ss_pred HHHHHHc----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010853 167 IVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 242 (499)
Q Consensus 167 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (499)
+...+.. .+++++|.+.+++..... +.+...+..+...|...|++++|...+++..+. .+.+..++..+..+|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CCChHHHHHHHHHHHH
Confidence 5555544 567889999999887754 235677888999999999999999999999853 3444556666655543
Q ss_pred ccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010853 243 LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 322 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 322 (499)
..+... .... ...........+..+.|...++...... +.+..++..+...+...|++++|.
T Consensus 293 ~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 293 AKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHH
Confidence 211110 0000 0000111111234567777777776654 455666777888888888888888
Q ss_pred HHHHHHhccCCCCCch-hhHHHHHH-HHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 323 NLLYQVMPQRGYSPGI-VTYNAVLR-GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 323 ~~~~~~~~~~~~~~~~-~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
..|.+.+....-..+. ..+..+.. .....|++++|+..|.+..+.. |+...... ....+..+++...
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l 423 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHH
Confidence 8888766433111111 11222221 2346788888888888887753 33322221 2233445555555
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 401 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 401 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..++. +..+|..+..+|...|++++|++.|++.++.+
T Consensus 424 ~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 424 SKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44432 56678888888888898899999998888765
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.9e-15 Score=126.31 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=164.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCC----HHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPD----AVTFTT 307 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~~ 307 (499)
.+..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...+++..+... ..++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555566666666666666666666655 4666777777777777777777777777665321 0111 466777
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+...+...|++++|...+.+.+... |+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7778888888888888887766432 332 33556677888888888888764 445667788888888889
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILR 467 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 467 (499)
++++|...++++....+. +..+|..+..++...|++++|.+.++++.+... .+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999888765543 677888888899999999999999999888753 357788888888999999999999998
Q ss_pred HHHH
Q 010853 468 EMRK 471 (499)
Q Consensus 468 ~m~~ 471 (499)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=4.7e-15 Score=124.03 Aligned_cols=199 Identities=11% Similarity=0.021 Sum_probs=140.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++.+... +.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 455566667777777777777777777777654 4566777777777777777777777777766543 334556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 344 VLRGLFRL-----------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 344 ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
+..++... |++++|...+++..+.. +.+...+..+..++...|++++|...++++.+.. .+...+.
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 67777777 88999999998888764 4467788888888999999999999999888776 5778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.+..+|...|++++|+..|++..+..+. +...+..+...+...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8889999999999999999998887533 66778888888889999999988887764
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1.4e-14 Score=135.40 Aligned_cols=378 Identities=9% Similarity=-0.036 Sum_probs=199.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCH---hHHHHHHHhccCCCCCCchhhHHHH
Q 010853 56 VLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV---NEVFRIAEDMPQGKSVNEEFACGHM 132 (499)
Q Consensus 56 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l 132 (499)
.+...+.+.|++++|...+.++.+. + +...+..+...+...|+. ++|++.|+...+. +..++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-----g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~L 75 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-----G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----T---CCTGGGTCC--------------------------------CHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHH
Confidence 4677788888888888877666432 2 334455566667777777 7888888777654 34455556
Q ss_pred HHHHHhcC-----ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChh---HHHHHHHHHHhCCCCCCcccHHHHHH
Q 010853 133 IDSLCRSG-----RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCM---RAYQLLEEGIQFGYLPSEHTYKVLVE 204 (499)
Q Consensus 133 ~~~~~~~~-----~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~ 204 (499)
...+...+ ++++|...|++..+.| +...+..|...|...+..+ .+.+.+......| +......+..
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~ 149 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVL 149 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 66454444 6678888888877765 2336666666666554433 3444554444433 3455566666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC---ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc--
Q 010853 205 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIK---NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKM-- 279 (499)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 279 (499)
.|...+.++.+......+.......++..+..+...|...| +.++|+..|+...+.|.. +...+..+...|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 66666644433333222222111222236666666666677 677777777777776643 444445556666544
Q ss_pred --CCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH-H--HccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC--
Q 010853 280 --GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG-L--LNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR-- 352 (499)
Q Consensus 280 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 352 (499)
+++++|...|+... .+ +...+..+... + ...+++++|+..|.+.... + +...+..+...|. .|
T Consensus 229 ~~~d~~~A~~~~~~aa-~g----~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA-PG----YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp SSCCHHHHHHHHHHHG-GG----STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSS
T ss_pred CCCCHHHHHHHHHHHc-CC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCC
Confidence 57777777777766 22 33344444444 2 4567777777777775532 2 4445555555554 44
Q ss_pred ---CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----c
Q 010853 353 ---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----S 421 (499)
Q Consensus 353 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 421 (499)
++++|..+|++.. .| +...+..|...|.. ..++++|...|++..+.|. ......|...|.. .
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBC
T ss_pred CCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCC
Confidence 7777777777766 33 45556666655554 3377777777777766543 2234455555543 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 422 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 422 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.+.++|...|+...+.|.. +.......+......++.++|.++.++..
T Consensus 372 ~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4677777777777766532 22222222222223334555666655543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=3.4e-14 Score=132.77 Aligned_cols=380 Identities=11% Similarity=-0.013 Sum_probs=252.4
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH---HHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV---ERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
..+...+.+.|++++|++.|++..+.| ++..+..|...+...|+. ++|...|.+..+. ++..+..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------~~~A~~~ 74 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------CHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------CHHHHHH
Confidence 335666689999999999999998876 455667777788888888 8998877766532 4456666
Q ss_pred HHHHHHcCC-----CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChh---hHHHHHHHHHhcCCCCChhhHHHHH
Q 010853 97 LVDSLCREG-----YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH---GASRVVYVMRKRGLTPSLVSYNSIV 168 (499)
Q Consensus 97 l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~g~~p~~~~~~~l~ 168 (499)
+...+...+ ++++|+..|+...+.|.. .++..|...|...+..+ ++.+.+......| +...+..+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777565555 788999999998876642 36777888887766544 4555565555554 466777788
Q ss_pred HHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC---CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc-
Q 010853 169 HGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES---DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI- 244 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 244 (499)
..|...+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.+ .+....+..+...|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 888888866655554333332222334458888888999999 9999999999998655 44444445666666654
Q ss_pred ---CChHHHHHHHHHHHhcCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC--
Q 010853 245 ---KNPTELLNVLVFMLQTQCQPDVITLNTVING-F--CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG-- 316 (499)
Q Consensus 245 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 316 (499)
+++++|..+|+... . -+...+..+... + ...+++++|...|++..+.+ +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCC
Confidence 79999999999987 3 355666677766 4 56899999999999998754 6677777777777 55
Q ss_pred ---CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----
Q 010853 317 ---RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE---- 385 (499)
Q Consensus 317 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 385 (499)
++++|...|.+.. +-+...+..+...|.. ..++++|..+|+...+.|. ......|...|..
T Consensus 299 ~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGT 370 (452)
T ss_dssp SCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTB
T ss_pred CCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCC
Confidence 9999999998855 3355666667666665 3499999999999999873 3455666666664
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..+.++|...++...+.|.. +.......+......++.++|.++.++.+.
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46899999999999877643 222222222222333466777777777654
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.2e-15 Score=126.22 Aligned_cols=118 Identities=10% Similarity=-0.033 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHH
Q 010853 316 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 395 (499)
Q Consensus 316 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 395 (499)
|++++|...+.+..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...
T Consensus 119 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44444444444433221 1223344444445555555555555555554433 33445555555555555666666665
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 396 WDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++++.+..+. +...|..+..++...|++++|.+.+++..+.
T Consensus 196 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555543322 3445555666666666666666666655543
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.66 E-value=5.6e-12 Score=121.72 Aligned_cols=446 Identities=10% Similarity=-0.013 Sum_probs=303.5
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC---Hh
Q 010853 32 MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY---VN 108 (499)
Q Consensus 32 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~ 108 (499)
..+.+..|++.+... +-|...|..++..+.+.++++.+..+|++++...|. ....|..-+..-.+.|+ ++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~------~~~lW~~Yi~~E~~~~~~~~~~ 120 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL------MANIWCMRLSLEFDKMEELDAA 120 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTC--CCCHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHhhCCcchHH
Confidence 455666677766654 468999999999999999999999998888876554 45677778888888888 99
Q ss_pred HHHHHHHhccCCCC-CCchhhHHHHHHHHHhcCCh--------hhHHHHHHHHHh-cCC-CCC-hhhHHHHHHHHHc---
Q 010853 109 EVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGRN--------HGASRVVYVMRK-RGL-TPS-LVSYNSIVHGLCK--- 173 (499)
Q Consensus 109 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~-~g~-~p~-~~~~~~l~~~~~~--- 173 (499)
.+..+|++.....+ .|++..|...+....+.++. +...++|+.... .|. .|+ ...|...+.....
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 99999999887652 36777888887766665553 334577877554 366 554 4577777765432
Q ss_pred ------cCChhHHHHHHHHHHhCCCCCCcccHHH---HHHHHh----------cCCCHHHHHHHHHHHHh--CCC---CC
Q 010853 174 ------HGGCMRAYQLLEEGIQFGYLPSEHTYKV---LVEGLC----------GESDLEKARKVLQFMLS--KKD---VD 229 (499)
Q Consensus 174 ------~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~----------~~~~~~~a~~~~~~~~~--~~~---~~ 229 (499)
.++++.+..+|+..+......-..+|.. ...... ...+++.|...+.++.. .+. .|
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 3456788899999875211111122321 111110 01123344445544321 011 01
Q ss_pred c--------------------hhhHHHHHHHHhccC-------ChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 010853 230 R--------------------TRICNIYLRALCLIK-------NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 282 (499)
Q Consensus 230 ~--------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 282 (499)
. ...|...+..--..+ ..+.+..+|++.+...+ -+...|-..+..+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcH
Confidence 0 124555544332222 12345667877776643 3777888888888889999
Q ss_pred HHHH-HHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCC--------CCC------------chhhH
Q 010853 283 EEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG--------YSP------------GIVTY 341 (499)
Q Consensus 283 ~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~------------~~~~~ 341 (499)
++|. ++|+...... +.+...|...+...-+.|+++.|.++|++++.... -.| ....|
T Consensus 360 ~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 360 STVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp TTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 9996 9999988643 56677778888888899999999999998775310 013 12357
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc-CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 342 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 342 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
...+....+.|+.+.|..+|....+.-.......|...+..-.+. ++.+.|..+|+...+.- ..+...|..++.....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF-ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHh
Confidence 777777788899999999999998861122334444333333344 45999999999998763 3366778899998899
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 010853 421 SGKIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 490 (499)
.|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.++.+++.+ ..|+......+.+-|.-
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~--~~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE--KFPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH--HSTTCCHHHHHHHHTCB
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHhcC
Confidence 999999999999998874322 345788888888889999999999999988 45776677777666643
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.8e-14 Score=120.50 Aligned_cols=193 Identities=15% Similarity=0.036 Sum_probs=98.8
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
+..+...+...|++++|...++...+..+. +...+..+..++.+.|++++|+..+++..+.. +.+...+..+...+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 333333444444444444444444333221 44445555555555555555555555555433 334445555555555
Q ss_pred cc-----------CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 314 NV-----------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 314 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
.. |++++|+..+.+.+... +.+...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 55 66666666666655433 2234455566666666666666666666666654 456666666666
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
+...|++++|...++++.+..+. +...+..+..++...|++++|++.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66667777777776666654433 4556666666666677777776666554
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=1e-13 Score=120.75 Aligned_cols=164 Identities=9% Similarity=0.005 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
|..+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~ 152 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAY 152 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHH
Confidence 4555555555555555555555555433 2344455555555555566666655555544321 22233333333122
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCC-CCCC------HHHHHHHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPS-NIHD------NYVYAAMIKGL 418 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~ 418 (499)
...+++++|...|+++.+.. +.+...+..+..++...|+ ++.|...++++.+.. ..|+ ..+|..+...|
T Consensus 153 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 153 YYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 33345555555555555432 2234444444455554444 444555554443211 0011 12344444455
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010853 419 CRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~ 437 (499)
...|++++|.+.++++.+.
T Consensus 232 ~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 5555555555555555444
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=1.5e-13 Score=115.89 Aligned_cols=213 Identities=9% Similarity=-0.027 Sum_probs=150.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 44556667777777777777777777776643 4456677777777777777777777777765443 3345566777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHhhCCCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 345 LRGLFRL-RRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 345 l~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
...+... |++++|...++.+.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+..++...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 7777777 88888888888777632222 3566777777888888888888888887765433 5667788888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 423 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 423 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
++++|.+.++++.+.....+...+..+...+...|+.+.+..+++.+.+ ..|+......+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~ 221 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 8888888888887765324566677777777888888888888888765 34655544443
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=9.8e-14 Score=119.30 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 346 (499)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.+.+.+... +.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 345555555666666666666666655443 3445556666666666666666666666654332 224445555666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
.+...|++++|..+++++.+.+..| +...+..+..++...|++++|...++++...... +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666522222 3445566666666777777777777666654332 4556666777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHH
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWR 482 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 482 (499)
+|...++++.+... .+...+..+...+...|++++|.+.++++.+ ..|+...+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 246 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTSHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCCHHHH
Confidence 77777777666532 3455666666667777777777777777765 335444433
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=1.5e-13 Score=119.73 Aligned_cols=251 Identities=10% Similarity=0.010 Sum_probs=189.4
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC--HHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD--AVTFTTIIF 310 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~ 310 (499)
.+......+...|++++|...+++..+..+. +...+..+..++...|++++|+..+++..+... .++ ...|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHH
Confidence 3444556666677777777777777665432 555788888899999999999999999987331 222 445889999
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
.+...|++++|+..+.+.+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654 3355688899999999999999999999998874 556777777773444556999
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHhcCChH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSG-VTPN------IVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~ 460 (499)
+|...++++.+..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999876543 56778888888888888 888999999888642 1233 257788889999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HhHHHHHHHHhccc
Q 010853 461 EAYQILREMRKNGLNPD-AVTWRILDKLHGNR 491 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 491 (499)
+|.+.++++.+ +.|+ ...+..+.......
T Consensus 239 ~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 239 KADAAWKNILA--LDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHC------
T ss_pred HHHHHHHHHHh--cCccHHHHHHHhhhhhccc
Confidence 99999999988 4565 44554544444433
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=3.2e-14 Score=121.58 Aligned_cols=212 Identities=15% Similarity=0.144 Sum_probs=151.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHH
Confidence 345567777778888888888888888887754 5567788888888888888888888888876543 345667778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...... +...+..+...+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCC
Confidence 8888888899999999998888764 456778888888899999999999999988765433 66788888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHH
Q 010853 424 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRIL 484 (499)
Q Consensus 424 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l 484 (499)
+++|.+.++++.+... .+..++..+..+|...|++++|.+.++++.+ ..|+ ...+..+
T Consensus 175 ~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~ 233 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHAK 233 (243)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHHH
Confidence 9999999999888753 3577888888999999999999999999887 3454 3344333
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=3.9e-13 Score=115.53 Aligned_cols=201 Identities=12% Similarity=0.004 Sum_probs=157.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010853 232 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 311 (499)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (499)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHH
Confidence 4556666667777777777777777766543 356777888888888888888888888887654 4567788888888
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
+...|++++|.+.+.+.+. .+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 8889999999998888765 22233 45677778888888999999999999888764 446778888888999999999
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|...++.+.+... .+...+..+...+...|++++|.+.++++.+..
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999876544 366778888888999999999999999988864
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=4.6e-14 Score=123.13 Aligned_cols=247 Identities=11% Similarity=-0.044 Sum_probs=163.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCC---CchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 010853 208 GESDLEKARKVLQFMLSKKDV---DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 284 (499)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 284 (499)
..|++++|...++++.+.... .+..++..+...+...|++++|...+++..+..+. +...+..+..++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 446677777777776654211 12345666667777777777777777777665432 56777778888888888888
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (499)
|...|+++.+.. +.+...+..+...+...|++++|...+.+++... |+.......+..+...|++++|...+...
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888888877654 4456777788888888888888888888766443 33333344444556668888888888777
Q ss_pred hhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010853 365 LGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 441 (499)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 441 (499)
.... +++...+ .++..+...++.++|...++.+....... +..++..+..+|...|++++|...|+++.+.+ |
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 6643 3333333 36666777778888888888876433211 14577888888888889999998888888763 3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 442 NIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 233355667777777777665
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.9e-13 Score=113.25 Aligned_cols=202 Identities=8% Similarity=-0.036 Sum_probs=153.8
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (499)
...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 44566666667777777777777777666543 256677778888888888888888888887654 456777888888
Q ss_pred HHHcc-CCHHHHHHHHHHHhccCCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 311 GLLNV-GRIQEALNLLYQVMPQRGY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 311 ~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
.+... |++++|...+.+.+. .+. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 88888 888888888888765 222 2335667778888888899999999988887764 4457788888888899999
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+++|...++++....+..+...+..+...+...|+.+++..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988876554246667777888888889999999988888765
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=2.3e-13 Score=123.13 Aligned_cols=246 Identities=7% Similarity=0.081 Sum_probs=169.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR-IEEALKVLNDMVAGKFCAPDAVTFTTIIFG 311 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (499)
.+..+...+...|++++|+..+++.++..+. +...|+.+..++...|+ +++|+..|+++.... +.+...|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 4555555666666666666666666665433 56677777777777785 888888888777654 4567777777778
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh-cCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 390 (499)
+...|++++|+..|.+++... +-+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 888888888888887776554 3456677777777778888888888888887765 4467777777777777 55546
Q ss_pred hH-----HHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC------
Q 010853 391 EA-----KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG--KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS------ 457 (499)
Q Consensus 391 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 457 (499)
+| ...+++++...+. +...|..+..++...| ++++|++.+.++ +.+ ..+...+..+...|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4677777665544 5667777777777777 578888888777 332 335567777777777763
Q ss_pred ---ChHHHHHHHHHH-HHCCCCCC-HhHHHHHHHHhc
Q 010853 458 ---MKREAYQILREM-RKNGLNPD-AVTWRILDKLHG 489 (499)
Q Consensus 458 ---~~~~a~~~~~~m-~~~g~~p~-~~~~~~l~~~~~ 489 (499)
..++|+++++++ .+ +.|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 247788888887 55 4553 455665555443
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.8e-12 Score=110.76 Aligned_cols=222 Identities=9% Similarity=-0.083 Sum_probs=162.2
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHH
Q 010853 232 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTT 307 (499)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (499)
..+..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 79 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHH
Confidence 344555555666666666666666665522 44566667777777 778888888887777643 5666777
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHH
Q 010853 308 IIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIV 379 (499)
Q Consensus 308 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 379 (499)
+...|.. .+++++|+..+.+..... +...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 7777777 788888888887766432 55667777777777 788888888888888765 55666777
Q ss_pred HHHHHh----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 380 IDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 380 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777 888888888888887653 45677778888888 888888888888888764 2567777778
Q ss_pred HHHh----cCChHHHHHHHHHHHHCC
Q 010853 452 GACK----LSMKREAYQILREMRKNG 473 (499)
Q Consensus 452 ~~~~----~g~~~~a~~~~~~m~~~g 473 (499)
.|.. .+++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 888888999888888754
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=6.4e-14 Score=122.20 Aligned_cols=187 Identities=11% Similarity=-0.055 Sum_probs=134.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCC---CChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHc
Q 010853 27 AITGEMDVAYKVFDEMRHCGVL---PNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 103 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (499)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...+.++++.-+ .+..++..+...+..
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHH
Confidence 4568889999999998886321 2456788888888899999999888877776422 246678888888888
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQL 183 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~ 183 (499)
.|++++|.+.|+...+..+ .+..++..+..++...|++++|...|+.+.+. .|+.......+..+...|++++|...
T Consensus 90 ~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888888888776554 34567777888888888888888888888776 34544444455555667888888888
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 184 LEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+.+..... |+......++..+...++.++|...++....
T Consensus 167 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 167 LKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 87766542 2223333466666777777777777777653
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.1e-13 Score=118.33 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=118.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 33344444444555555555554444322 245556666666666667777766666666543 345666666666677
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777776655433 2344556666666777777777777777766653 345666777777777777777777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..++++...... +..++..+..+|...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777655432 55677777777778888888888887777754
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=4.4e-12 Score=110.31 Aligned_cols=178 Identities=8% Similarity=-0.074 Sum_probs=105.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc----c
Q 010853 244 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN----V 315 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 315 (499)
.+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+. .+...+..+...|.. .
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVT 127 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcc
Confidence 444444444444444443 34455555555555 66666666666666553 245555556666665 6
Q ss_pred CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh----cC
Q 010853 316 GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SN 387 (499)
Q Consensus 316 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 387 (499)
+++++|+..+.+..... +...+..+...+.. .+++++|...|++..+.+ +...+..+...|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCc
Confidence 66666666666654322 33444555555555 666777777777666653 34556666666666 67
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 438 (499)
++++|...+++..+.+. ...+..+...|.. .+++++|.+.|++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777665432 4456666666666 677777777777776654
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.57 E-value=5.4e-13 Score=120.65 Aligned_cols=246 Identities=10% Similarity=0.062 Sum_probs=138.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCC-HHHHHHHHHHHHhCCCCCchhhHHHHHHHH
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD-LEKARKVLQFMLSKKDVDRTRICNIYLRAL 241 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (499)
.|..+..++...|++++|++.+++.++... -+...|..+..++...|+ +++|+..+++++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al------------------ 159 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAII------------------ 159 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHH------------------
Confidence 455555555555666666666665555321 133445555555555554 555555555554
Q ss_pred hccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHH
Q 010853 242 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 321 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 321 (499)
+..+. +...|..+..++...|++++|+..|+++.+.. +.+...|..+..++...|++++|
T Consensus 160 -----------------~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 160 -----------------EEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp -----------------HHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTH
T ss_pred -----------------HHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHH
Confidence 33322 44555555566666666666666666665543 44555666666666666666666
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHh-cCCHHHH-----HHHHHHHhhCCCCcCHHhHHHHHHHHHhcC--ChhhHH
Q 010853 322 LNLLYQVMPQRGYSPGIVTYNAVLRGLFR-LRRVEEA-----KEVFNCMLGIGVVADSTTYAIVIDGLCESN--QLDEAK 393 (499)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~ 393 (499)
+..+.+++... +.+...|+.+..++.. .|..++| +..+++..+.. +-+...|..+..++...| ++++|.
T Consensus 220 l~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHH
Confidence 66666655443 2344555555555555 3443555 46666666543 345566777777777666 577777
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCC-ChhhHHHHHHHHH
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSG---------KIHEAVHFLYEL-VDSGVTP-NIVCYNVVIDGAC 454 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 454 (499)
+.+.++ +.. ..+...+..+..+|.+.| ..++|+++++++ .+. .| ....|..+...+.
T Consensus 297 ~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 297 NQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 777776 332 235566777777777653 247788888777 554 33 3344555544443
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=8.7e-14 Score=128.86 Aligned_cols=277 Identities=13% Similarity=0.108 Sum_probs=139.7
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHhcCCCHHHHHHHHHHHHhC----CCCC-
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-----EHTYKVLVEGLCGESDLEKARKVLQFMLSK----KDVD- 229 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 229 (499)
....+......+...|++++|...|++..+.. |+ ...+..+...+...|+++.|...+++.... +..+
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 44455666777777888888888888777643 32 245666677777777777777777765431 1111
Q ss_pred chhhHHHHHHHHhccCChHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH
Q 010853 230 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQ-PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 308 (499)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 308 (499)
...++..+...+...|++++|...+.+..+.... ++. .....++..+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~~~~~~l 133 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK--------------------------------VGEARALYNL 133 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------------------------------cchHHHHHHH
Confidence 1224444445555555555555555444432100 010 0012233444
Q ss_pred HHHHHccCC--------------------HHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 309 IFGLLNVGR--------------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 309 ~~~~~~~~~--------------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (499)
...+...|+ +++|...+.+.+... +. +....++..+...+...|++++|...+++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444444 444444444332210 00 111234445555555566666666666555
Q ss_pred hhC----CCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 365 LGI----GVV-ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN----IH-DNYVYAAMIKGLCRSGKIHEAVHFLYEL 434 (499)
Q Consensus 365 ~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 434 (499)
.+. +.. ....++..+..+|...|++++|...+++...... .+ ...++..+...|...|++++|.+.+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 432 100 0122455555666666666666666665542110 00 1334555666666666666666666665
Q ss_pred HHcCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 435 VDSGVT-PN----IVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 435 ~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.+.... .+ ..++..+...|...|++++|.+.+++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 542100 01 3345556666666666666666666654
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.1e-13 Score=126.24 Aligned_cols=307 Identities=12% Similarity=0.061 Sum_probs=195.8
Q ss_pred CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCC-
Q 010853 124 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLP- 194 (499)
Q Consensus 124 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 194 (499)
.....+......+...|++++|...|+...+.+.. + ...+..+...+...|++++|...+++.... +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34455667788899999999999999999987432 3 356888899999999999999999987543 2112
Q ss_pred CcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHhccCC-------------hHHHHHHHHH
Q 010853 195 SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-DR----TRICNIYLRALCLIKN-------------PTELLNVLVF 256 (499)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~-------------~~~a~~~~~~ 256 (499)
...++..+...+...|++++|...+++....... .+ ..++..+...+...|+ ++++...
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 2456778888999999999999999987642100 00 1234444444444444 0000000
Q ss_pred HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 257 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG----KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+++|...+++.... +.......++..+...+...|++++|...+.+.+...
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444444433221 1001123455666666777777777777766654332
Q ss_pred CCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 333 GYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 333 ~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
.-.++ ..++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++.....
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 11111 235666777777888888888888776542 1111 14567778888888899999888888775321
Q ss_pred CC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCh
Q 010853 404 NI-----HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVT-PNIVCYNVVIDGACKLSMK 459 (499)
Q Consensus 404 ~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 459 (499)
.. ....++..+..+|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 11 11446778888899999999999999887653 111 1234566677777777765
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=1.6e-13 Score=127.26 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=160.4
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc-----ccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHH
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-----HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 237 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (499)
.+..+...+...|++++|...|+++.+.. |+. ..+..+...+...|++++|...+++......
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------- 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK---------- 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 44455666777778888888777777643 332 3566666777777777777777776643200
Q ss_pred HHHHhccCChHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCCHHHHHHHHHHH
Q 010853 238 LRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK----FCAPDAVTFTTIIFGL 312 (499)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 312 (499)
..+ .......+..+...|...|++++|...+++..+.. .......++..+...|
T Consensus 118 ---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 118 ---------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 000 01122334444445555555555555554443210 0011233445555555
Q ss_pred HccCC-----------------HHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-
Q 010853 313 LNVGR-----------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV- 370 (499)
Q Consensus 313 ~~~~~-----------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 370 (499)
...|+ +++|...+.+.+... +. .....++..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55555 555555555433211 11 112235566666777777777777777776543100
Q ss_pred cC----HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--
Q 010853 371 AD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-----HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV-- 439 (499)
Q Consensus 371 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-- 439 (499)
.+ ..++..+..+|...|++++|...++++...... ....++..+...|...|++++|.+.+++..+...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 226677777788888888888888776532111 1134677788888888888888888888765311
Q ss_pred ---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 440 ---TPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 440 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.....++..+...|...|++++|.+.+++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11134677778888888888888888888765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=2e-13 Score=126.68 Aligned_cols=233 Identities=14% Similarity=0.027 Sum_probs=152.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDS 100 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (499)
.+...|++++|+..|+++.+.+ +.+. .++..+...+...|++++|...+.+.++......+......++..+...
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3378899999999999998864 2233 4688888999999999999999988887655543334455678888889
Q ss_pred HHcCCCHhHHHHHHHhccCCC-----CCCchhhHHHHHHHHHhcCC-----------------hhhHHHHHHHHHhc---
Q 010853 101 LCREGYVNEVFRIAEDMPQGK-----SVNEEFACGHMIDSLCRSGR-----------------NHGASRVVYVMRKR--- 155 (499)
Q Consensus 101 ~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~~--- 155 (499)
+...|++++|...+++..+.. ......++..+...+...|+ +++|.+.+++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888765431 11234467777788888888 88888887775442
Q ss_pred -CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-CC----cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 010853 156 -GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 156 -g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 228 (499)
+..+ ...++..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...+++.......
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1111 1236667777777888888888888776543111 01 125666667777777777777777665432100
Q ss_pred -----CchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 229 -----DRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 229 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
....++..+...+...|++++|...+++..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 012234444444444555555554444443
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.4e-12 Score=104.65 Aligned_cols=171 Identities=10% Similarity=0.045 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
+...|..+...|...|++++|+..|++.++.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 44556666666666666666666666655443 2344556666666666666666666666665543 33455566666
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (499)
..+...++++.+...+.+.....+. +...+..+..+|...|++++|++.|++..+.++. +..+|..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 6666677777777777766654433 5556667777777777777777777777766432 5566777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 010853 461 EAYQILREMRKNGLNPDA 478 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~~ 478 (499)
+|++.|++..+ +.|+.
T Consensus 159 ~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHh--CCccC
Confidence 77777777766 34543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.52 E-value=1.3e-11 Score=109.19 Aligned_cols=216 Identities=7% Similarity=-0.017 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhC-CCCCCCHHHHHHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFC-------KMGRI-------EEALKVLNDMVAG-KFCAPDAVTFTTIIFGL 312 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 312 (499)
++|...|++.....+ .+...|..++..+. +.|++ ++|..+|++..+. . +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 455566666655432 25556666555554 34664 7777777777762 2 34556777777777
Q ss_pred HccCCHHHHHHHHHHHhccCCCCCc-hh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHH-hcCCh
Q 010853 313 LNVGRIQEALNLLYQVMPQRGYSPG-IV-TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQL 389 (499)
Q Consensus 313 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 389 (499)
...|++++|..+|++.+.. .|+ .. .|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence 7777888888877776643 333 22 57777777777778888888888777754 334444443333322 25788
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 390 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTP--NIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 390 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
+.|..+|++..+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888777655433 56677777777777888888888888877753 343 3456777777777778888888888
Q ss_pred HHHHH
Q 010853 467 REMRK 471 (499)
Q Consensus 467 ~~m~~ 471 (499)
+++.+
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=3.1e-13 Score=121.57 Aligned_cols=275 Identities=13% Similarity=0.096 Sum_probs=170.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHH
Q 010853 164 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 238 (499)
Q Consensus 164 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 238 (499)
+......+...|++++|...|+++.+.. |+ ...+..+...+...|++++|...+++.....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 4444555666677777777777666542 22 2345556666666666666666666554210
Q ss_pred HHHhccCChHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC----HHHHHHHHHHHH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD----AVTFTTIIFGLL 313 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 313 (499)
...+. +.....+..+...+...|++++|...+++..+.....++ ..++..+...+.
T Consensus 74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00000 112334555566666666666666666654432100111 335556666666
Q ss_pred ccCC--------------------HHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 010853 314 NVGR--------------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIG- 368 (499)
Q Consensus 314 ~~~~--------------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 368 (499)
..|+ +++|...+.+.+... +. ......+..+...+...|++++|...+++..+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6666 677766665543221 11 1123456677777888899999988888876431
Q ss_pred ---C-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 010853 369 ---V-VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-H----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG- 438 (499)
Q Consensus 369 ---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~- 438 (499)
. .....++..+...+...|++++|...+++....... . ...++..+...+...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 0 111236778888889999999999999887532111 1 14467888889999999999999999887531
Q ss_pred ---C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 439 ---V-TPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 439 ---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
- .....++..+...|...|++++|...++++.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 11134677888899999999999999999876
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=4.1e-13 Score=120.75 Aligned_cols=276 Identities=14% Similarity=0.058 Sum_probs=168.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
...+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+.+.++.............++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 445588999999999999998864 223 367788899999999999999999888776655433333466788888
Q ss_pred HHHHcCCCHhHHHHHHHhccCCCC-----CCchhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGR--------------------NHGASRVVYVMR 153 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~ 153 (499)
..+...|++++|...+++..+... .....++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 889999999999888887653211 0113366677777888888 777777776654
Q ss_pred hc----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCC-C----CcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 154 KR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-P----SEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 154 ~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+. +..| ...++..+...+...|++++|.+.+++..+.... + ...++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 32 1111 1235666666777777777777777665532100 0 11244555555566666666666665543
Q ss_pred hCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----C
Q 010853 224 SKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----C 298 (499)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~ 298 (499)
.... ..+. .....++..+...+...|++++|...+++...... .
T Consensus 251 ~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 251 LLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 2100 0000 00133445555566666666666666655543210 0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhc
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 330 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 330 (499)
.....++..+...+...|++++|...+.+.+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11133555566666666666666666666543
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.50 E-value=4.6e-10 Score=108.51 Aligned_cols=424 Identities=8% Similarity=0.018 Sum_probs=278.4
Q ss_pred ChhhHHHHH---HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHHHhhhccCCccCH
Q 010853 18 PVASLTSAL---AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD---VERANVLMFKLWERMKEEEDLSVNN 91 (499)
Q Consensus 18 ~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ 91 (499)
+...|...+ .+.+.++.+..+|+++... .+.....|...+..-.+.++ ++.+..+|++.+...+ ..|+.
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~----~~~sv 139 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL----GNNDL 139 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS----CCCCH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC----CCCCH
Confidence 556666666 5678999999999999986 35567788889998888888 9999887776654321 13677
Q ss_pred HhHHHHHHHHHcCCCH--------hHHHHHHHhccC-CCC-CC-chhhHHHHHHHHHh---------cCChhhHHHHHHH
Q 010853 92 AAFANLVDSLCREGYV--------NEVFRIAEDMPQ-GKS-VN-EEFACGHMIDSLCR---------SGRNHGASRVVYV 151 (499)
Q Consensus 92 ~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~ 151 (499)
..|..-+....+.++. +.+.++|+.... .|. .+ +...|...+..... .++++.+..+|+.
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 7777777665555443 334577776443 233 23 34577777765442 3456788999999
Q ss_pred HHhcCCCCChhhHHHHHHHHHc-------------cCChhHHHHHHHHHHhC--CCC---CC------------------
Q 010853 152 MRKRGLTPSLVSYNSIVHGLCK-------------HGGCMRAYQLLEEGIQF--GYL---PS------------------ 195 (499)
Q Consensus 152 ~~~~g~~p~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~~---~~------------------ 195 (499)
........-..+|......-.. ..+++.|...+.++... ++. |.
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8864222112233222111111 11234445555443211 111 11
Q ss_pred --cccHHHHHHHHhcCC-------CHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHH-HHHHHHHhcCCCCC
Q 010853 196 --EHTYKVLVEGLCGES-------DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELL-NVLVFMLQTQCQPD 265 (499)
Q Consensus 196 --~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~ 265 (499)
...|...+..--..+ ..+.+..+|++.+. ..+....+|...+..+...|+.++|. .+++...... +.+
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~-~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s 377 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ-HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCC
Confidence 022333443322222 13445677888875 34557778888888888899999996 9999988754 346
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--------CCC------------CHHHHHHHHHHHHccCCHHHHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKF--------CAP------------DAVTFTTIIFGLLNVGRIQEALNLL 325 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~ 325 (499)
...|-..+....+.|+++.|.++|+.+..... ..| ....|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66677888888999999999999999875310 013 2346777788888889999999999
Q ss_pred HHHhcc-CCCCCchhhHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 326 YQVMPQ-RGYSPGIVTYNAVLRGLFRL-RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 326 ~~~~~~-~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
.+++.. ....+ ..|......-.+. ++.+.|..+|+...+. .+.+...+...+......|+.+.|+.+|++.+...
T Consensus 458 ~~A~~~~~~~~~--~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 458 GKCRRLKKLVTP--DIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHTGGGSCT--HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHhcCCCCh--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 998755 22222 2333322222333 4589999999999886 35566777788888888999999999999998765
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 404 NIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 404 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+ ....|..++..-.+.|+.+.+..+.+++.+.- |+......++.-|
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 422 44589999999999999999999999999874 4444444444333
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=4.3e-12 Score=116.37 Aligned_cols=230 Identities=7% Similarity=-0.053 Sum_probs=143.1
Q ss_pred HHHhccCChHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----CHHHHHHH
Q 010853 239 RALCLIKNPTELLNVLVFMLQT----QCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-----DAVTFTTI 308 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l 308 (499)
..+...|++++|...+++..+. +-.+ ...++..+...|...|+++.|...+++..+.....+ ...++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444455555555555555432 1111 234566666777777777777777766554211011 23466667
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCc----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CcCHHhHHHH
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GV-VADSTTYAIV 379 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 379 (499)
...|...|++++|...+.+.+....-.++ ..++..+..++...|++++|...+++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 77777788888887777766533211111 235667777788888888888888877652 22 3345667778
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPN-IVCYNVVID 451 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 451 (499)
..+|...|++++|...+++..... .......+..+...+...|+ +++|+.++++. +..|+ ...+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 888888888888888887765321 11112235667777778888 66666666655 22222 346667788
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88888898888888888754
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.48 E-value=7.9e-12 Score=101.51 Aligned_cols=167 Identities=10% Similarity=0.104 Sum_probs=131.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...|..+...|...|++++|++.|++..+.. +.+..++..+..++.+.|++++|...+.+..... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 56677888888888888888888888887764 5567778888888888888888888887765444 3345566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
...+...++++.+...+.+..+.. +.+...+..+..++...|++++|.+.++++.+..+. +..+|..+..+|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 777788888888888888887764 456777888888888889999999888888766544 667888888888899999
Q ss_pred HHHHHHHHHHHHc
Q 010853 425 HEAVHFLYELVDS 437 (499)
Q Consensus 425 ~~a~~~~~~~~~~ 437 (499)
++|++.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888875
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=1e-11 Score=113.79 Aligned_cols=233 Identities=9% Similarity=0.025 Sum_probs=154.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhC----CCCC-chhhHHHHHHHHhccCChHHHHHHHHHHHhcCC------CCCHhhHH
Q 010853 202 LVEGLCGESDLEKARKVLQFMLSK----KDVD-RTRICNIYLRALCLIKNPTELLNVLVFMLQTQC------QPDVITLN 270 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 270 (499)
....+...|++++|...+++.... +..+ ...++..+...+...|++++|...+.+..+... .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455566666666666666532 1111 123566666666667777776666666554211 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHhcc---CCC-CCchhhHH
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ---RGY-SPGIVTYN 342 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 342 (499)
.+..+|...|++++|...+++..+.....+ ...++..+...|...|++++|...+.+.+.. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888888999999888887764311011 2346778888899999999999988887642 122 33356678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC----CCCcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGI----GVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMI 415 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li 415 (499)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.. ........+..+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 8888899999999999999887653 112223345667788888888 777777777662 1122334677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..|...|++++|.+.+++..+
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.8e-13 Score=119.53 Aligned_cols=205 Identities=13% Similarity=0.005 Sum_probs=100.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC-----CC
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-----GY 334 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~ 334 (499)
...+..+...|...|++++|...+++.... ...+.....+..+...+...|++++|...+.+.+... +.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 334455555555555555555555554432 1102234455555566666666666666665544321 11
Q ss_pred -CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----
Q 010853 335 -SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI------G-VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP---- 402 (499)
Q Consensus 335 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 402 (499)
+.....+..+...+...|++++|..+++++.+. + .+....++..+..+|...|++++|...++++...
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122344555566666666666666666665543 1 1122345566666666667777776666666531
Q ss_pred ---CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 403 ---SNIHD-------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 403 ---~~~~~-------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...+. ...+..+...+...+.+.++...++...... +.+..++..+..+|.+.|++++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 00111 0112222222333344445555555554432 22445677777788888888888888877754
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2.8e-12 Score=120.62 Aligned_cols=195 Identities=10% Similarity=-0.055 Sum_probs=110.0
Q ss_pred CHhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 265 DVITLNTVINGFCKMGRI-EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|.+.+.. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHH
Confidence 444445555555555555 55555555554432 333455555555555555555555555554432 233444555
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc--------CChhhHHHHHHHHhcCCCC-
Q 010853 344 VLRGLFRL---------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVWPSNI- 405 (499)
Q Consensus 344 ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~- 405 (499)
+...+... |++++|...+++..+.. +.+...+..+..+|... |++++|...|+++.+..+.
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 66666666666665543 33455566666666665 6666666666666554321
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 406 -HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 406 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
.+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 25556666666777777777777777766665422 4455666666666666666666544
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=7.3e-11 Score=104.43 Aligned_cols=220 Identities=10% Similarity=-0.016 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHh-------ccCCh-------HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 010853 213 EKARKVLQFMLSKKDVDRTRICNIYLRALC-------LIKNP-------TELLNVLVFMLQTQCQPDVITLNTVINGFCK 278 (499)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 278 (499)
++|..+|++.+.. .+.+...|..++..+. ..|+. ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4566666666542 3344555555555544 24664 7777777777763112355677888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH-hcCCHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF-RLRRVEE 356 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~ 356 (499)
.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|.+.+... +++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888743 22333 77888888888888888888888876543 233334433332222 3689999
Q ss_pred HHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 357 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIH--DNYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
|..+|+...+.. +.+...+..++..+.+.|++++|..+|+++.... ..| ....|..++..+...|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999887753 4467788888888889999999999999998753 233 456888888888899999999999999
Q ss_pred HHHcC
Q 010853 434 LVDSG 438 (499)
Q Consensus 434 ~~~~~ 438 (499)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88764
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=6.6e-12 Score=118.03 Aligned_cols=213 Identities=9% Similarity=-0.006 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh-HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLN 290 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 290 (499)
++.+...++.... ..+.+...+..+...+...|++ ++|...+++..+.... +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555442 2334455666666666666666 6777666666665432 56677778888888888888888888
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc--------CC
Q 010853 291 DMVAGKFCAPDAVTFTTIIFGLLNV---------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL--------RR 353 (499)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~ 353 (499)
+..+. .|+...+..+...+... |++++|+..+.+.+... +.+...|..+..++... |+
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 87765 35567777777778777 88888888888876554 33466777777777777 88
Q ss_pred HHHHHHHHHHHhhCCCC---cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVV---ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 430 (499)
+++|...|++..+.. + .+...+..+..+|...|++++|...|+++.+..+. +...+..+..++...|++++|++.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888753 3 47778888888888889999998888888766543 566778888888888888888765
Q ss_pred HHH
Q 010853 431 LYE 433 (499)
Q Consensus 431 ~~~ 433 (499)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=8.7e-13 Score=117.21 Aligned_cols=248 Identities=14% Similarity=0.078 Sum_probs=130.6
Q ss_pred hhhHHHHHHHHHccCChhHHHHHHHHHHhC-------CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhh
Q 010853 161 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 233 (499)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (499)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 345566666666777777777777666542 111233445555666666666666666666554310
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHH
Q 010853 234 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTT 307 (499)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ 307 (499)
........+.....+..+...|...|++++|...++++.+. +..+.....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112344555566666666666666666655442 110123445566
Q ss_pred HHHHHHccCCHHHHHHHHHHHhcc------CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcC--
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVAD-- 372 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-- 372 (499)
+...+...|++++|...+.+.+.. ...+....++..+...+...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 666666777777777766665433 111222345666667777777777777777776642 11111
Q ss_pred -----HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 373 -----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 373 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
...+..+...+...+.+.++...++...... .....++..+..+|...|++++|.+.|++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1122223333444556666666776665432 225567888999999999999999999988764
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=9.4e-11 Score=107.05 Aligned_cols=199 Identities=14% Similarity=-0.037 Sum_probs=133.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 26 LAITGEMDVAYKVFDEMRHCGVLPNSL----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 26 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
+...|++++|...+++........+.. +++.+...+...|++++|...+.+.+...+..+.......++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 378899999999999988754222222 4666778888999999999999888876665432222234566778888
Q ss_pred HcCCCHhHHHHHHHhccCC----CCC--C-chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC----ChhhHHHHHHH
Q 010853 102 CREGYVNEVFRIAEDMPQG----KSV--N-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP----SLVSYNSIVHG 170 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~ 170 (499)
...|++++|...+++.... +.. | ....+..+...+...|++++|...+++..+..... ...++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 8999999998888876532 111 2 23455667778888899999988888876653221 12356667777
Q ss_pred HHccCChhHHHHHHHHHHhCCCCCCc-ccHH-----HHHHHHhcCCCHHHHHHHHHHHHh
Q 010853 171 LCKHGGCMRAYQLLEEGIQFGYLPSE-HTYK-----VLVEGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 171 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~ 224 (499)
+...|++++|...+++.......++. ..+. ..+..+...|+++.|...+++...
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 88888888888888877643211211 1111 122335677777777777777653
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=5.6e-11 Score=108.65 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=148.1
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCC-C----CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CCHHHHHHH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQ-P----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCA-----PDAVTFTTI 308 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l 308 (499)
..+...|++++|...+++..+.... + ...++..+...|...|+++.|...+++..+..... ....++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3444556666666666655543110 1 23456667777777888888877777665421101 124566777
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCC----chhhHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCcCHHhHHHH
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSP----GIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-----IGVVADSTTYAIV 379 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 379 (499)
...|...|++++|.+.+.+.+....-.+ ...++..+..++...|++++|...+++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 7788888888888888777654321111 134566777788888888888888888776 33 3336677888
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-hhhHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPN-IVCYNVVID 451 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 451 (499)
..++.+.|++++|...+++..... .......+..+...+...++ +.+|+..+++ .+..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 888888999999988888876422 12223345666666777777 6677776665 222222 235667788
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|...|++++|...+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 88889999999998888754
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=1e-10 Score=94.91 Aligned_cols=164 Identities=12% Similarity=0.039 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
..+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345555666666677777777666644322 2345556666666667777777777777766553 3456666667777
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 462 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 462 (499)
+...|++++|...++++....+ .+...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777777765433 2556677777777777777888777777776642 2556777777777777888888
Q ss_pred HHHHHHHHH
Q 010853 463 YQILREMRK 471 (499)
Q Consensus 463 ~~~~~~m~~ 471 (499)
.+.++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777765
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.36 E-value=5.2e-10 Score=102.09 Aligned_cols=273 Identities=10% Similarity=-0.039 Sum_probs=151.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc----cHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCc----hhhHH
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH----TYKVLVEGLCGESDLEKARKVLQFMLSKKD-VDR----TRICN 235 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 235 (499)
......+...|++++|...+++........+.. ++..+...+...|+++.|...+++...... ..+ ...+.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667888888888888876643211111 345556667778888888888877654211 111 12344
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC-CHHHH
Q 010853 236 IYLRALCLIKNPTELLNVLVFMLQT----QCQ--P-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC--AP-DAVTF 305 (499)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~-~~~~~ 305 (499)
.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... .+ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 5566666777777777777666543 111 1 2234455666667777777777777766543210 11 13445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCc---CHHhHH
Q 010853 306 TTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN-----AVLRGLFRLRRVEEAKEVFNCMLGIGVVA---DSTTYA 377 (499)
Q Consensus 306 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 377 (499)
..+...+...|++++|...+.+.............+. ..+..+...|++++|...++........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 5666666777777777777766543211111111111 12233556677777777777665533211 122345
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWP----SNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.+...+...|++++|...++..... +..++. .++..+..++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5566666777777777776665421 111111 24455556666677777777777766653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.35 E-value=8.5e-10 Score=100.80 Aligned_cols=91 Identities=8% Similarity=-0.141 Sum_probs=52.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCC-----CC-CcccHHH
Q 010853 133 IDSLCRSGRNHGASRVVYVMRKRGL-TPS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-----LP-SEHTYKV 201 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~~ 201 (499)
...+...|++++|...|++..+... .++ ..++..+..+|...|+++.|...+.+..+... .+ ...++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667777777777777655411 112 23556666677777777777777666543210 00 1234555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 010853 202 LVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+...|...|++++|...+++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 6666666666666666666654
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=1.2e-10 Score=94.43 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=132.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 345 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 345 (499)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 3456667777888888888888888877654 4567778888888888888888888888876543 34566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 010853 346 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 346 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (499)
..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++...... +...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHH
Confidence 88888899999999988887764 456778888888899999999999999888765433 5678888889999999999
Q ss_pred HHHHHHHHHHHcC
Q 010853 426 EAVHFLYELVDSG 438 (499)
Q Consensus 426 ~a~~~~~~~~~~~ 438 (499)
+|.+.++++.+..
T Consensus 162 ~A~~~~~~~~~~~ 174 (186)
T 3as5_A 162 EALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 9999998887653
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.34 E-value=6.2e-11 Score=115.91 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
+..+++.+...+.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..|++..+.. +-+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34556666666666666666666666655443 2234556666666666666666666666666543 33455666666
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChH
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (499)
.+|...|++++|.+.|+++++..+. +...|+.+..+|...|++++|++.|++.++.... +...+..+..++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 6666677777777777666654433 4556666777777777777777777776665422 4556666666777777777
Q ss_pred HHHHHHHHHH
Q 010853 461 EAYQILREMR 470 (499)
Q Consensus 461 ~a~~~~~~m~ 470 (499)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.30 E-value=3.3e-10 Score=95.41 Aligned_cols=206 Identities=12% Similarity=0.035 Sum_probs=154.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHH
Q 010853 264 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 264 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 343 (499)
.|+..+......+...|++++|...|++..+... .++...+..+..++...|++++|+..+.+.+... +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence 4567888889999999999999999999987652 2777888889999999999999999999977544 335667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-------HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC---HHHHHH
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADS-------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAA 413 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ 413 (499)
+..++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++.+. .|+ ...|..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 8899999999999999999998864 3345 45777888889999999999999999765 343 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
+..+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+ +.|+......++
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 777776544 34455555543 22344444433 3345678999999999988 557654444333
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=7e-11 Score=103.16 Aligned_cols=229 Identities=13% Similarity=0.007 Sum_probs=155.5
Q ss_pred hccCChHHHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHHH
Q 010853 242 CLIKNPTELLNVLVFMLQT-------QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTI 308 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 308 (499)
...|++++|...+++..+. ..+....++..+...|...|++++|...++++.+. ...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777666542 22334667888899999999999999999988754 2113346678889
Q ss_pred HHHHHccCCHHHHHHHHHHHhccC-----C-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------C-CCcCHHh
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQR-----G-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI------G-VVADSTT 375 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 375 (499)
...+...|++++|...+.+.+... . .+....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999876541 1 1334567888888899999999999999988764 1 1223567
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHhcC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCC
Q 010853 376 YAIVIDGLCESNQLDEAKRFWDDIVWP-------SNIH-DNYVYAAMIKGLCRSGKIH------EAVHFLYELVDSGVTP 441 (499)
Q Consensus 376 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~ 441 (499)
+..+..+|...|++++|...++++... ...+ ....|..+...+...+... .+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888889999999999999999988642 1111 2223444444443333322 22222221111 1112
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 442 NIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
...++..+...|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788889999999999999999998875
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.28 E-value=1.6e-10 Score=113.12 Aligned_cols=166 Identities=17% Similarity=0.098 Sum_probs=110.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...++.+..+|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++.++.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 34566667777777777777777777766543 3456667777777777777777777777665443 2345566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
..++...|++++|++.|++..+.. +-+...+..+..+|...|++++|...|+++.+..+. +...|..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 777777777777777777776653 345666777777777777777777777777655433 455677777777777777
Q ss_pred HHHHHHHHHHHH
Q 010853 425 HEAVHFLYELVD 436 (499)
Q Consensus 425 ~~a~~~~~~~~~ 436 (499)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666553
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=7.5e-10 Score=93.21 Aligned_cols=197 Identities=12% Similarity=-0.001 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 310 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (499)
+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHHH
Confidence 345555555666666666666666666655543455666667777777777777777777777654 445666777777
Q ss_pred HHHccCCHHHHHHHHHHHhccCCCCCch-----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--CHHhHHHHHHHH
Q 010853 311 GLLNVGRIQEALNLLYQVMPQRGYSPGI-----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVIDGL 383 (499)
Q Consensus 311 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 383 (499)
.+...|++++|...+.+.+....-.+.. ..|..+...+...|++++|...|++..+.. +. +...+..+..+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHHH
Confidence 7777777777777777766544221111 346666667777888888888888887753 22 345666666666
Q ss_pred HhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 384 CESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 384 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
...| ..+++++...... +...|.... ....+.+++|...+++..+..
T Consensus 164 ~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 5443 3344444433222 333343333 233466788888888888764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=1.2e-10 Score=101.67 Aligned_cols=230 Identities=14% Similarity=0.079 Sum_probs=160.6
Q ss_pred hcCCCHHHHHHHHHHHHh-------CCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhc------CC-CCCHhhHHHH
Q 010853 207 CGESDLEKARKVLQFMLS-------KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT------QC-QPDVITLNTV 272 (499)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 272 (499)
...|+++.|..++++..+ ...+....++..+...+...|++++|...+++..+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777766654 222334568889999999999999999999988765 22 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhcc------CCCCCchhh
Q 010853 273 INGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVT 340 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 340 (499)
..+|...|++++|...+++.... ...+....++..+...+...|++++|...+.+.+.. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 111234677888999999999999999999998754 112234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCc-CHHhHHHHHHHHHhcCChhhH------HHHHHHHhcCCCCC
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVA-DSTTYAIVIDGLCESNQLDEA------KRFWDDIVWPSNIH 406 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~a------~~~~~~~~~~~~~~ 406 (499)
+..+...+...|++++|...+++..+. ...+ ....+..+...+...+....+ ...++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998763 1122 222333333344333333332 222222211 1122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
...++..+..+|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3447888999999999999999999988753
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=1.1e-08 Score=87.81 Aligned_cols=185 Identities=9% Similarity=0.073 Sum_probs=111.2
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 364 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 364 (499)
++..|++....+ .++..++..+..++...|++++|++++.+.+......-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566666665543 344555556677777777777777777775433211234556667777777778888888888777
Q ss_pred hhCCCCc-----CHHhHHHHHHHH--HhcC--ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 365 LGIGVVA-----DSTTYAIVIDGL--CESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 365 ~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
.+. .| +..+...|+.++ ...| ++..|..+|+++.... |+..+-..++.++...|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 664 34 244555555452 2223 7777777887775432 332222333346777788888887777655
Q ss_pred HcC-----C----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 010853 436 DSG-----V----TPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 436 ~~~-----~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
+.. . +-|..++..+|......|+ +|.++++++.+ ..|+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 431 0 2255566455555555665 67777777776 445543
No 88
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.18 E-value=6e-08 Score=91.02 Aligned_cols=208 Identities=9% Similarity=-0.027 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 327 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 327 (499)
+.+..+|++++...+ .+...|...+..+.+.|+.+.|..+++..... +.+...+. .|....+.++..+.+.+
T Consensus 196 ~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHHHHHHHH
Confidence 456677777776543 35677777788888888899999999888875 22222222 12221111111111111
Q ss_pred HhccCC--------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHh-cCChhhHHHHHHH
Q 010853 328 VMPQRG--------YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEAKRFWDD 398 (499)
Q Consensus 328 ~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 398 (499)
...... .......|...+....+.++.+.|..+|+.. ... ..+...|...+..-.. .++.+.|..+|+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 110000 0111245666666666778899999999999 321 2344445433322222 3369999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 399 IVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..+..+. +...|...++.....|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 346 al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8865432 44567778888888999999999999872 2567788888777778999999998888763
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=1.6e-09 Score=94.86 Aligned_cols=165 Identities=10% Similarity=-0.093 Sum_probs=81.7
Q ss_pred HHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCC---C--chhhHHHHH
Q 010853 59 RGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV---N--EEFACGHMI 133 (499)
Q Consensus 59 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~ 133 (499)
..+...|++++|...+.+.++..+...+......+|+.+..+|.+.|++++|+..++...+.... + -..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556677777776666665544332111112345666666666666666666666554332110 0 123445555
Q ss_pred HHHHhc-CChhhHHHHHHHHHhcCCCC-C----hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc------cHHH
Q 010853 134 DSLCRS-GRNHGASRVVYVMRKRGLTP-S----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------TYKV 201 (499)
Q Consensus 134 ~~~~~~-~~~~~A~~~~~~~~~~g~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 201 (499)
.+|... |++++|...|++..+..... + ..++..+...+...|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 555554 66666666655554431100 0 2234555555555555555555555555432211111 2344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH
Q 010853 202 LVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 202 l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+..++...|+++.|...+++..
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555544
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=3e-10 Score=88.34 Aligned_cols=143 Identities=14% Similarity=0.028 Sum_probs=104.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE 426 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (499)
.+...|++++|+..+....... +.+...+..+...|...|++++|.+.|+++++..+. +..+|..+..+|...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3445567788888887776642 223445666778888888888888888888766544 67788888888888888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCC-CHhHHHHHHHHhcccCCC
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI-LREMRKNGLNP-DAVTWRILDKLHGNRGND 494 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 494 (499)
|+..|++..+.++. +...|..+...|.+.|++++|.+. +++..+ +.| ++..|....+++.+.|+|
T Consensus 84 A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 84 AVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCcC
Confidence 88888888887533 567788888888888888766654 577776 455 456677777777777765
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=1.7e-09 Score=94.66 Aligned_cols=198 Identities=13% Similarity=0.028 Sum_probs=145.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 24 SALAITGEMDVAYKVFDEMRHC----GVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
.++...|++++|+..|++.... |.+++ ..+|+.+..++.+.|++++|...+.+.++..+..+.......+++.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3447899999999999988653 32222 568899999999999999999999999887665433222356788899
Q ss_pred HHHHcC-CCHhHHHHHHHhccCCCCCC-----chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh------hHHH
Q 010853 99 DSLCRE-GYVNEVFRIAEDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV------SYNS 166 (499)
Q Consensus 99 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~------~~~~ 166 (499)
..+... |++++|+..|++..+..+.. ...++..+...+.+.|++++|...|++..+........ .|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 999996 99999999999876543211 13467888999999999999999999999875432221 4677
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcc------cHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH------TYKVLVEGLC--GESDLEKARKVLQFML 223 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~~~~~~a~~~~~~~~ 223 (499)
+..++...|++++|...|++..+. .|+.. .+..++..+. ..+++++|+..|+.+.
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888899999999999999998763 34321 2334555554 4566777777776654
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=3e-09 Score=87.94 Aligned_cols=138 Identities=11% Similarity=-0.034 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.+..++...|++++|...|++..+.. +.+...+..+..++...|++++|...|+++.+..+. +..+|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHh
Confidence 36677778888888888888887764 446777788888888888888888888888766544 5667777777776554
Q ss_pred C--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 010853 423 K--IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 486 (499)
Q Consensus 423 ~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 486 (499)
+ .+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3 3344555554431 222223344445556667888888888888876 5677666655554
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=3.3e-09 Score=80.68 Aligned_cols=128 Identities=10% Similarity=0.146 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...... +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4455666666777777777777766543 345566666777777777777777777777654332 45566777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 421 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.|++++|.+.++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7778888777777776542 2456677777777778888888887777765
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.13 E-value=5.3e-09 Score=90.02 Aligned_cols=100 Identities=9% Similarity=0.008 Sum_probs=49.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhH
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTY 341 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 341 (499)
...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..++.+.|++++|+..|.+.+....-.|. ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 3344444555555555555655555555432 112 344555555555555666665555555443321111 2234
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhhC
Q 010853 342 NAVLRGLFR--------LRRVEEAKEVFNCMLGI 367 (499)
Q Consensus 342 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~ 367 (499)
..+..++.. .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 444444444 55666666666655543
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.10 E-value=6.8e-09 Score=89.32 Aligned_cols=177 Identities=9% Similarity=-0.026 Sum_probs=138.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CcCHHh
Q 010853 299 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV--VADSTT 375 (499)
Q Consensus 299 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 375 (499)
+.+...+-.+...+.+.|++++|+..|.+++....-.|. ...+..+..++...|++++|...|+...+... +.....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456777888888999999999999999998765522221 56777888899999999999999999988631 122456
Q ss_pred HHHHHHHHHh--------cCChhhHHHHHHHHhcCCCCCCHHHH-----------------HHHHHHHHhcCCHHHHHHH
Q 010853 376 YAIVIDGLCE--------SNQLDEAKRFWDDIVWPSNIHDNYVY-----------------AAMIKGLCRSGKIHEAVHF 430 (499)
Q Consensus 376 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~ 430 (499)
+..+..++.. .|++++|...|++++...+. +.... ..+...|...|++++|+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 99999999999999865443 22223 5568889999999999999
Q ss_pred HHHHHHcCCCC--ChhhHHHHHHHHHhc----------CChHHHHHHHHHHHHCCCCCCH
Q 010853 431 LYELVDSGVTP--NIVCYNVVIDGACKL----------SMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 431 ~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
|+++++..... ....+..+..+|... |++++|...++++.+ ..|+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCCC
Confidence 99999874332 234677788888866 889999999999987 34654
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=9.7e-09 Score=78.01 Aligned_cols=129 Identities=10% Similarity=0.180 Sum_probs=80.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHH
Q 010853 305 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 384 (499)
Q Consensus 305 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (499)
+..+...+...|++++|...+.++.... +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4445555566666666666666544332 2234455555666666666666666666666543 334556666667777
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..|++++|...++++....+. +...+..+...+...|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777776654332 4556677777777777777777777777654
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=6.4e-08 Score=83.00 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVA 294 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 294 (499)
..+...+..+.+.|+.+.|.+.++.|.+
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.05 E-value=9.9e-09 Score=84.76 Aligned_cols=131 Identities=6% Similarity=0.015 Sum_probs=89.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+..++.+.|++++|+..|.+.+... +.+...+..+..++...|++++|...|++..+.. +.+..++..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 7778888888888888888877554 3456677788888888888888888888888764 456777777777776554
Q ss_pred C--hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 010853 388 Q--LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 445 (499)
Q Consensus 388 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 445 (499)
+ .+.+...++.+.. ..|....+.....++...|++++|+..|++.++. .|+...
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 3 3445555555432 2333334444566667778889999999888775 455443
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.03 E-value=3.7e-09 Score=104.03 Aligned_cols=174 Identities=10% Similarity=-0.029 Sum_probs=125.9
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 010853 277 CKMGRIEEALKVLNDMV--------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 348 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 348 (499)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|+..+.+.+... +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 66788888888888877 332 4456677777888888888888888888876554 33556777777788
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...|++++|...|++..+.. +.+...+..+..++...|++++ ...|+++.+.++. +...|..+..++...|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887764 4466777788888888888888 8888888766544 5667888888888888888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSM 458 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (499)
+.|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888887765322 34566666666655444
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=2.7e-09 Score=82.91 Aligned_cols=145 Identities=7% Similarity=-0.041 Sum_probs=91.2
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
...+...|++++|+..+.+..... +.+...+..+...|...|++++|++.|++..+.. +-+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 344455666777777776644322 2234455566677777777777777777777654 4466677777777777777
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF-LYELVDSGVTPNIVCYNVVIDGACKLSM 458 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (499)
+++|...|+++.+..+. +..+|..+...|.+.|++++|.+. +++..+..+. ++..|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 77777777777665443 556777777777777777665544 4666665432 45556655555555553
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.02 E-value=1.1e-08 Score=81.98 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=74.7
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH-HHhcC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESN 387 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 387 (499)
...+...|++++|...+.+.+... +.+...+..+..++...|++++|...++...+.. |+...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 334444444555544444433222 2223344444444444555555555554444332 122222111111 11111
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChHHHHHHH
Q 010853 388 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQIL 466 (499)
Q Consensus 388 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 466 (499)
....|...+++..+..+. +...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222345555555543332 45556666666666666666666666666554332 2345666666666666666666666
Q ss_pred HHHH
Q 010853 467 REMR 470 (499)
Q Consensus 467 ~~m~ 470 (499)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=2.3e-07 Score=87.05 Aligned_cols=347 Identities=7% Similarity=-0.081 Sum_probs=198.4
Q ss_pred ccCC-HHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCC
Q 010853 63 RTRD-VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 141 (499)
Q Consensus 63 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 141 (499)
+.|+ ...|+.+|..++...|. |+++.+..+|++....- |+...|...+....+.++
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------------~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~ 62 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------------KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQ 62 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC-
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------------CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCc
Confidence 3455 66667766666655542 88999999999988743 688888888887777663
Q ss_pred -hhhHHHHHHHHHhc-CCCC-ChhhHHHHHHHHH----ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHh---cCCC
Q 010853 142 -NHGASRVVYVMRKR-GLTP-SLVSYNSIVHGLC----KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC---GESD 211 (499)
Q Consensus 142 -~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~ 211 (499)
.+....+|+..... |..| +...|...+..+. .+++.+.+..+|+..+.. |.. .+..+-..|. ...+
T Consensus 63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~ 138 (493)
T 2uy1_A 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELN 138 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhc
Confidence 45677788876654 5333 5567777776654 245677888888888773 211 1122222221 1112
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-------CHHH
Q 010853 212 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-------RIEE 284 (499)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 284 (499)
...+..++.+.. +.+..|..++..+...-...+...|...+..-...+ ..+.
T Consensus 139 ~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 139 KITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHH
T ss_pred cccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHH
Confidence 222333332211 122223333333222100113345555444432211 1345
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHH-HHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEA-KEVFNC 363 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-~~~~~~ 363 (499)
+..+|+++.... +.+...|...+..+.+.|+.+.|..++.+.+.. +.+...+. .|......++. ..+.+.
T Consensus 198 v~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 198 MHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHHHHHHHHH
Confidence 677888887754 556788888888888999999999999998865 33332222 22222111121 122221
Q ss_pred HhhCC-----C---CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 010853 364 MLGIG-----V---VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHFLYEL 434 (499)
Q Consensus 364 ~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~ 434 (499)
..... . .....+|...+....+.++.+.|..+|+.+ .. ...+..+|......-... ++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 11000 0 112245666777777788899999999999 32 223445554333322233 3699999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 435 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
.+.... ++..+...+....+.|+.+.|..+|+++
T Consensus 347 l~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 347 LLKHPD-STLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 886422 4455666777778899999999888875
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.99 E-value=2.7e-07 Score=80.04 Aligned_cols=225 Identities=8% Similarity=-0.071 Sum_probs=138.0
Q ss_pred HhcCC-hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC--CHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH--
Q 010853 27 AITGE-MDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR--DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL-- 101 (499)
Q Consensus 27 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 101 (499)
.+.|. .++|+++++.++... +-+..+|+.-..++...+ ++++++..+..++..-|+ +..+|+.....+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk------~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK------NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT------CCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHH
Confidence 44444 568999999999864 235566888888888888 999999998888876544 234454444444
Q ss_pred --HcC---CCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChh--hHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 010853 102 --CRE---GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH--GASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 174 (499)
Q Consensus 102 --~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 174 (499)
... ++++++++.++.+.+.++ .+..+|+.-..++.+.|.++ ++++.++.+.+..+. |...|+.....+...
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 444 677888888888777665 55667777777777777777 788888888777554 666676655555555
Q ss_pred CC------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCH-HHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCh
Q 010853 175 GG------CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDL-EKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 247 (499)
Q Consensus 175 ~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (499)
+. ++++++.+++++.... -|...|+.+-..+.+.|+. +.+..+..++...+
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~--------------------- 251 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE--------------------- 251 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG---------------------
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc---------------------
Confidence 44 5555555555554321 2344444444444444432 22333333332211
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 294 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 294 (499)
..-..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 252 ------------~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 252 ------------KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp ------------GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 00122455566666666666666667766666654
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=9.3e-09 Score=101.16 Aligned_cols=174 Identities=11% Similarity=0.006 Sum_probs=141.5
Q ss_pred hccCChHHHHHHHHHHH--------hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 010853 242 CLIKNPTELLNVLVFML--------QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 313 (499)
Q Consensus 242 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (499)
...|++++|.+.+++.. +.. +.+...+..+..++...|++++|+..|+++.+.. +.+...|..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 77899999999999988 433 2356778888899999999999999999998765 567888999999999
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 393 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 393 (499)
..|++++|...|++.+... +.+...+..+..++...|++++ ...|++..+.. +.+...+..+..++...|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987665 3356678888889999999999 99999998865 557788999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 010853 394 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 423 (499)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (499)
..|+++.+.++. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 999999765433 45577777777766554
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=7e-08 Score=79.84 Aligned_cols=175 Identities=10% Similarity=-0.053 Sum_probs=96.2
Q ss_pred HHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC----CHHHHHHH
Q 010853 285 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR----RVEEAKEV 360 (499)
Q Consensus 285 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 360 (499)
|.+.|++..+. -+...+..+...|...+++++|+..|.+..... +...+..+...|.. + ++++|..+
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 34444444442 244445555555555555555555555544221 33344444444444 4 56666666
Q ss_pred HHHHhhCCCCcCHHhHHHHHHHHHh----cCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 010853 361 FNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCR----SGKIHEAVHFL 431 (499)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~ 431 (499)
|++..+.| +...+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665544 44455555555555 56666677766666554321 014456666666666 56677777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHHCC
Q 010853 432 YELVDSGVTPNIVCYNVVIDGACKL-S-----MKREAYQILREMRKNG 473 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g 473 (499)
++..+. ..+...+..|...|... | ++++|...+++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777665 12334555555555542 2 6677777777776665
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.98 E-value=3.2e-07 Score=79.51 Aligned_cols=217 Identities=6% Similarity=0.016 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHH----Hcc---CCH
Q 010853 248 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL----LNV---GRI 318 (499)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 318 (499)
++|+.....++...+. +...|+.--.++...| +++++++.++.+.... +.+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3455555544444322 3334444444444444 5555555555555443 22333333222222 222 455
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC------hh
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------LD 390 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 390 (499)
++++..+.+++... +-+..+|+.-.-.+.+.|.++ ++++.++.+.+.. +-|...|+.-...+...+. ++
T Consensus 127 ~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 55555555554433 334444444444444555555 6666666665544 3355555544444444444 55
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDSG--VTPNIVCYNVVIDGACKLSMKREAYQILR 467 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 467 (499)
++.+.+++++...+. |...|+.+-..+.+.|+..+ +.++..++.+.+ -..+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 666666666555443 55566666555555555322 334444444322 11244556666666666666666666666
Q ss_pred HHHH
Q 010853 468 EMRK 471 (499)
Q Consensus 468 ~m~~ 471 (499)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=7.6e-08 Score=80.57 Aligned_cols=190 Identities=9% Similarity=-0.000 Sum_probs=119.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch-hhHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYN 342 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 342 (499)
+...+..+...+.+.|++++|...|+++.+.....+ ....+..+..++.+.|++++|+..|.+.+....-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344556667778889999999999999887532122 24567778888999999999999998877655332221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 343 AVLRGLFR------------------LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 343 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
.+..++.. .|++++|...|+++.+.. +-+.......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 34444433 345555555555555542 1111111111000 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 473 (499)
......+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113456778899999999999999998743311 2467888899999999999999999988753
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=5e-08 Score=84.98 Aligned_cols=165 Identities=14% Similarity=0.079 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHH-H
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI-V 379 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 379 (499)
+...+..+...+...|++++|...|++.+... +.+...+..+...+...|++++|...++.+.... |+...... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34444455555556666666666666555443 2234455555556666666666666666555432 33322221 1
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSM 458 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 458 (499)
...+...++.+.|...+++.....+. +...+..+...+...|++++|.+.|+++....... +...+..++..+...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22244555556666666666554432 45566666666666666666666666666653321 14456666666666666
Q ss_pred hHHHHHHHHHHH
Q 010853 459 KREAYQILREMR 470 (499)
Q Consensus 459 ~~~a~~~~~~m~ 470 (499)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 666666665543
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1.5e-08 Score=81.27 Aligned_cols=163 Identities=12% Similarity=0.003 Sum_probs=120.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
.+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..... |+...+......
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHH
Confidence 44566677888899999999998877654 4567788888888999999999999888765443 233222221111
Q ss_pred -HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHH
Q 010853 348 -LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIH 425 (499)
Q Consensus 348 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 425 (499)
+...+....|...+++..+.. +.+...+..+..++...|++++|...++++.+..+.+ +...+..+..++...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 122223345788888887754 4467888889999999999999999999998776543 3567888999999999999
Q ss_pred HHHHHHHHHHH
Q 010853 426 EAVHFLYELVD 436 (499)
Q Consensus 426 ~a~~~~~~~~~ 436 (499)
+|...|++...
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999887654
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=3.4e-08 Score=86.11 Aligned_cols=166 Identities=10% Similarity=-0.008 Sum_probs=125.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH-H
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN-A 343 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ 343 (499)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+.+.... .|+..... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 45556677778888899999999998887765 556778888888889999999999988875543 34433222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcC
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSG 422 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g 422 (499)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...++++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223556677788888888888765 5577888888899999999999999999988765442 2567888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 010853 423 KIHEAVHFLYELVD 436 (499)
Q Consensus 423 ~~~~a~~~~~~~~~ 436 (499)
+.++|...+++...
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 98888888877653
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1.7e-07 Score=77.46 Aligned_cols=177 Identities=11% Similarity=-0.015 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC----CHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG----RIQEALNL 324 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 324 (499)
+|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ +...+..+...|.. + ++++|...
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3455555555553 56677777778888888888888888887743 56667777777777 6 78888888
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC-cCHHhHHHHHHHHHh----cCChhhHHHH
Q 010853 325 LYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCE----SNQLDEAKRF 395 (499)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~ 395 (499)
|.+.... -+...+..+...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8886532 245566666666766 77888999999888887621 126677778888877 7789999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 010853 396 WDDIVWPSNIHDNYVYAAMIKGLCRS-G-----KIHEAVHFLYELVDSGV 439 (499)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~~ 439 (499)
|++..+.+ .+...+..|...|... | ++++|...|++..+.|.
T Consensus 152 ~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99887652 2444666777777643 3 88999999998888763
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=3.2e-08 Score=95.61 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.+... +.+...+..+..++...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999988764 5568889999999999999999999999977554 345678888889999999999999
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---GKIHEAVHFLYELV 435 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 435 (499)
..+++..+.. +.+...+..+..+|...|++++|.+.++++.+.... +...+..+..++... |++++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999998865 456788899999999999999999999999876543 667888899999999 99999999999999
Q ss_pred HcCCCCChhhHHHH
Q 010853 436 DSGVTPNIVCYNVV 449 (499)
Q Consensus 436 ~~~~~~~~~~~~~l 449 (499)
+.+.. +...|..+
T Consensus 156 ~~~p~-~~~~~~~l 168 (568)
T 2vsy_A 156 AQGVG-AVEPFAFL 168 (568)
T ss_dssp HHTCC-CSCHHHHT
T ss_pred hcCCc-ccChHHHh
Confidence 87543 33444433
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=1.8e-07 Score=78.29 Aligned_cols=188 Identities=8% Similarity=-0.069 Sum_probs=130.9
Q ss_pred hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH-HHHHH
Q 010853 231 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA-VTFTT 307 (499)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 307 (499)
...+......+...|++++|...|+.+.+..+... ...+..+..++.+.|++++|+..|+++.+.....+.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44566677888999999999999999998654321 3567788999999999999999999998754212221 24555
Q ss_pred HHHHHHc------------------cCCHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 308 IIFGLLN------------------VGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIG 368 (499)
Q Consensus 308 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 368 (499)
+..++.. .|++++|...|.+.+... |+. ..+..... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHH----------HHHHHHHHH---
Confidence 5555553 578999999999977554 332 22221111 001111110
Q ss_pred CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 010853 369 VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV 439 (499)
Q Consensus 369 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 439 (499)
.....+...|.+.|++++|...|+++++..+... ...+..+..+|.+.|++++|.+.++.+...++
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 1123456778899999999999999986544321 24688889999999999999999999887643
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=3.4e-08 Score=95.45 Aligned_cols=156 Identities=13% Similarity=-0.053 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 010853 244 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 323 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 323 (499)
.|++++|...+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998876533 67888999999999999999999999999865 5678899999999999999999999
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc---CChhhHHHHHHHHh
Q 010853 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQLDEAKRFWDDIV 400 (499)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 400 (499)
.+++.+... +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..
T Consensus 79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999987654 4456788889999999999999999999998865 45678889999999999 99999999999998
Q ss_pred cCCCC
Q 010853 401 WPSNI 405 (499)
Q Consensus 401 ~~~~~ 405 (499)
+.+..
T Consensus 156 ~~~p~ 160 (568)
T 2vsy_A 156 AQGVG 160 (568)
T ss_dssp HHTCC
T ss_pred hcCCc
Confidence 76554
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=2.2e-08 Score=88.29 Aligned_cols=159 Identities=11% Similarity=-0.042 Sum_probs=73.3
Q ss_pred cCChHHHHHHHHHHHhCCC------CCCh----hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHH
Q 010853 29 TGEMDVAYKVFDEMRHCGV------LPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLV 98 (499)
Q Consensus 29 ~~~~~~a~~~~~~~~~~~~------~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (499)
.|++++|.+++++..+... .++. ..|...+..+...|++++|...+.+.++..+.......-..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677788888887765210 1111 13444445555566666666655555544333211111233455555
Q ss_pred HHHHcCCCHhHHHHHHHhccCC----CCC-CchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-C----hhhHHHHH
Q 010853 99 DSLCREGYVNEVFRIAEDMPQG----KSV-NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP-S----LVSYNSIV 168 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p-~----~~~~~~l~ 168 (499)
..|.+.|++++|+..|++..+. +-. .-..++..+..+|.. |++++|+..|++..+..... + ..++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5555555555555555543221 110 012334444444544 55555555555443321000 0 22344444
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 010853 169 HGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~ 188 (499)
.++...|++++|+..|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 45555555555555554443
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=1.8e-07 Score=81.89 Aligned_cols=164 Identities=14% Similarity=0.083 Sum_probs=114.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHhccCCCCCchh----hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cC----HHhHHH
Q 010853 308 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-AD----STTYAI 378 (499)
Q Consensus 308 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 378 (499)
.+..+...|++++|...+.+........|+.. .+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888877665443334422 2334555566677888888888888763222 22 236788
Q ss_pred HHHHHHhcCChhhHHHHHHHHhc----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hhhHH
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVW----P-SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN-IVCYN 447 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 447 (499)
+..+|...|++++|...++++.+ . +..+ ...++..+..+|...|++++|.+.+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888889999999988888762 1 1111 2237788889999999999999999887753 22222 56788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 010853 448 VVIDGACKLSM-KREAYQILREMRK 471 (499)
Q Consensus 448 ~l~~~~~~~g~-~~~a~~~~~~m~~ 471 (499)
.+..+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88889999995 6999999988753
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.89 E-value=6.6e-07 Score=78.26 Aligned_cols=166 Identities=11% Similarity=-0.004 Sum_probs=122.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc----hhhHH
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYN 342 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 342 (499)
..+..+...|++++|..++++..+.....|+. ..+..+...+...+++++|+..+.+.+....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888999999999999988754323332 23345666777888999999999988753322233 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhh----C-CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhc----CCCCC-CHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLG----I-GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVW----PSNIH-DNYVY 411 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~ 411 (499)
.+..+|...|++++|...|+++.+ . +..+ ...++..+..+|...|++++|...+++..+ .+..+ -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999998874 1 1122 234788899999999999999999988763 22222 25688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 010853 412 AAMIKGLCRSGK-IHEAVHFLYELVD 436 (499)
Q Consensus 412 ~~li~~~~~~g~-~~~a~~~~~~~~~ 436 (499)
..+..+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999988764
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=3.8e-08 Score=86.81 Aligned_cols=95 Identities=9% Similarity=-0.033 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----CCCCC-HH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHD-NY 409 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~ 409 (499)
++..+...|.. |++++|+..|++..+. +... ...++..+...|...|++++|...+++.... +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444444544 6666666665555432 1000 1245556666666677777777666666432 11111 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
.+..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555556666677777777777766
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.85 E-value=3.9e-07 Score=75.44 Aligned_cols=130 Identities=11% Similarity=-0.041 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
..+..+...+...|++++|...+.+.+ .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 345556667777888888888777643 4566777777777888888888888888877654 4466777777788
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHD---------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|++++|...++++.+...... ...+..+..+|...|++++|.+.|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888887776543211 1566777777788888888888888777654
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=8.5e-07 Score=77.57 Aligned_cols=168 Identities=13% Similarity=0.068 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CcC--H
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV---VAD--S 373 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 373 (499)
..+...+..+...|++++|.+.+.+.+......++. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344445666777778888877777655433222211 1233345556677888888888888765321 111 4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHh---cCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-C
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNI-H--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----VTP-N 442 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 442 (499)
.+++.+...|...|++++|...++++. +.... + ...++..+..+|...|++++|.+.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888888888999999999888876 22111 1 12578888889999999999999998877532 111 1
Q ss_pred hhhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010853 443 IVCYNVVIDGACKLSMKREA-YQILREMR 470 (499)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 470 (499)
..+|..+..+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45778888889999999999 77677764
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=4.8e-07 Score=74.92 Aligned_cols=130 Identities=10% Similarity=-0.058 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 346 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~ 346 (499)
..+..+...+...|++++|...|++.. .|+...+..+...+...|++++|+..+.+.+... +.+...+..+..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~ 79 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 344556667777888888888887663 5677778888888888888888888887766543 345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCH----------------HhHHHHHHHHHhcCChhhHHHHHHHHhcCCC
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVADS----------------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 404 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 404 (499)
++...|++++|...|+...+.. +.+. ..+..+..++...|++++|...++.+.+..+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 7888888888888888877653 2222 5677777778888888888888888776543
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.79 E-value=2.1e-08 Score=77.38 Aligned_cols=104 Identities=8% Similarity=-0.035 Sum_probs=77.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+...+..+...+...|++++|...|+++....+. +...|..+..+|...|++++|++.|++..+..+. +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 3446666777777888888888888888766543 6667778888888888888888888888776533 5667777788
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 010853 452 GACKLSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
+|...|++++|...|++..+ +.|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 88888888888888888776 345543
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=2.5e-07 Score=69.09 Aligned_cols=99 Identities=10% Similarity=0.044 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
.+......|.+.|++++|...|++.++..+. +..+|..+..+|...|++++|++.+++.++.+.. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 4555566666667777777777666654433 5556666667777777777777777776665422 4556666666777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 010853 455 KLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
..|++++|++.|++..+ +.|+
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~ 113 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPS 113 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT
T ss_pred HCCCHHHHHHHHHHHHH--HCcC
Confidence 77777777777777666 4454
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.75 E-value=2.4e-07 Score=78.38 Aligned_cols=195 Identities=10% Similarity=-0.053 Sum_probs=127.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHhccCCHHHHHHHHHHHHHHhhhccCCccC---------
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVL-------VRGVLRTRDVERANVLMFKLWERMKEEEDLSVN--------- 90 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------- 90 (499)
...++...|++.|.++.+.. +-....|..+ ...+.+.++..++...+...++.-+..-+...+
T Consensus 17 ~~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 17 MLPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred ccCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 36899999999999999864 3356677777 455555555555544333332211111111111
Q ss_pred ------HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--hh
Q 010853 91 ------NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LV 162 (499)
Q Consensus 91 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~--~~ 162 (499)
..........+...|++++|.++|+.+...++ +......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 22334466778888999999999998887663 32255556667888899999999887554431 111 23
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSK 225 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 225 (499)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 567778888888888888888888764332243 234555666777888888888888888754
No 125
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=1e-07 Score=78.29 Aligned_cols=161 Identities=9% Similarity=-0.080 Sum_probs=103.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCC
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 106 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (499)
...|++++|.+.++.+... ......++..+...+...|++++|...+.+.+......+.......++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578999999966655442 223567788889999999999999999888887665543333345677778888888888
Q ss_pred HhHHHHHHHhccCC----CCCC--chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccC
Q 010853 107 VNEVFRIAEDMPQG----KSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT-PS----LVSYNSIVHGLCKHG 175 (499)
Q Consensus 107 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~ 175 (499)
+++|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+.... .+ ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888877765432 1011 2344566667777777777777777766542100 11 123455666666667
Q ss_pred ChhHHHHHHHHHH
Q 010853 176 GCMRAYQLLEEGI 188 (499)
Q Consensus 176 ~~~~a~~~~~~~~ 188 (499)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777666666544
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.74 E-value=6.2e-08 Score=74.85 Aligned_cols=97 Identities=9% Similarity=-0.058 Sum_probs=51.2
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 452 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (499)
...+..+...+...|++++|...|+.+....+. +...|..+..+|...|++++|+..|++....+.. +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 334444555555555555555555555443322 4445555555555555555555555555554322 34455555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 010853 453 ACKLSMKREAYQILREMRK 471 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~ 471 (499)
|...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=4.5e-07 Score=71.57 Aligned_cols=129 Identities=10% Similarity=-0.043 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+..+...+...|++++|...|+...+.. +.+..++..+..++...|++++|...+++.....+. +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345566666777788888888888777654 446677777788888888888888888887765433 566778888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV--IDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 470 (499)
...|++++|.+.++++.+.... +...+..+ +..+...|++++|++.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888888876432 44444333 333667788888888887664
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=2.6e-06 Score=74.44 Aligned_cols=170 Identities=11% Similarity=-0.015 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc----h
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 338 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 338 (499)
..+...+..+...|++++|.+.+.+..+.....++. ..+..+...+...|++++|+..+.+.+.......+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 345556777888999999999988877654211111 22344556677888999999998887643221112 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhh---C-CCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC----CCC-C
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLG---I-GVVA--DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-D 407 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 407 (499)
.+++.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788888889999999999999998862 1 1111 12578888999999999999999998876321 111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 010853 408 NYVYAAMIKGLCRSGKIHEA-VHFLYELVD 436 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 436 (499)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 777877653
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=7.3e-06 Score=71.85 Aligned_cols=231 Identities=7% Similarity=0.059 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHcc-C-CHHHHHH
Q 010853 247 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-G-RIQEALN 323 (499)
Q Consensus 247 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~ 323 (499)
.++|+++++.++...+. +..+|+.--..+...| .+++++..++.+.... +.+..+|+.-...+.+. + +++++++
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34555555555555433 4444555445555555 3666666666666554 44555555554444444 4 5566666
Q ss_pred HHHHHhccCCCCCchhhHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC-------
Q 010853 324 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------- 388 (499)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 388 (499)
.+.+++... +.+...|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.+.
T Consensus 147 ~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 666655433 233444443333333333333 6666777666654 4466666666666666554
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCh
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI--------------------HEAVHFLYELVDSG-----VTPNI 443 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~ 443 (499)
++++.+.+++++...+. |...|+-+-..+.+.|+. ....++..++...+ -.++.
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 46666666666655444 666666655555555442 22333333332221 02456
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHhHHHHHH
Q 010853 444 VCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILD 485 (499)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~ 485 (499)
..+..++..|...|+.++|.++++.+.+. ..| ...-|+-..
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~ 344 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence 67777778888888888888888887643 333 334444433
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=7.6e-06 Score=71.71 Aligned_cols=174 Identities=7% Similarity=-0.113 Sum_probs=125.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC-
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR-DVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE- 104 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 104 (499)
.+.+..++|+++++.++... +-+..+|+.-..++...+ +++++...+..++..-++ +..+|+.....+.+.
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK------ny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK------SYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHC
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhc
Confidence 55566678999999999864 335667888888888888 599999988888765443 566777777777666
Q ss_pred C-CHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 105 G-YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNH--------GASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 105 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
+ +++++++.++.+.+.++ .+..+|+.-..++.+.|.++ ++++.++++.+..+. |...|+.....+.+.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred CCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 6 88999999999998776 56778877666666666666 888899988887655 7778888777777766
Q ss_pred C-------hhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCC
Q 010853 176 G-------CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 210 (499)
Q Consensus 176 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (499)
. ++++++.+++.+.... -|...|+.+-..+.+.|
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 5 5677777777766431 24455554444444333
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=4.3e-07 Score=67.79 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+......+.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|...++++++.++. +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 345566677778888888888888877764 456777777888888888888888888888765543 566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 419 CRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
...|++++|++.|++.++..+. +...+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~-~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPS-NEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcC-CHHHHHHH
Confidence 8888888888888888876432 34444433
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.70 E-value=1.7e-07 Score=75.10 Aligned_cols=120 Identities=8% Similarity=0.062 Sum_probs=53.2
Q ss_pred ccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH-HHhcCCh--h
Q 010853 314 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQL--D 390 (499)
Q Consensus 314 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 390 (499)
..|++++|...+.+.+... +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3444455555554444332 2233444444445555555555555555544432 2234444444444 4444554 5
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
+|...++++....+. +...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555554433222 3344444445555555555555555555443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=7.3e-07 Score=67.26 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=44.8
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...++++...... +...+..+..++...|++++|.+.+++..+... .+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence 34444444444444555555444444433221 334444444455555555555555555444321 1334444444455
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555443
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=9.5e-07 Score=65.64 Aligned_cols=95 Identities=11% Similarity=0.151 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
.+..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 334444444444444444444444443221 1333444444455555555555555555444321 13344444445555
Q ss_pred hcCChHHHHHHHHHHHH
Q 010853 455 KLSMKREAYQILREMRK 471 (499)
Q Consensus 455 ~~g~~~~a~~~~~~m~~ 471 (499)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555444
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=5.8e-07 Score=67.49 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.....+. +...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 33344444444455555555554444332 223344444444444444555544444444433221 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 420 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
..|++++|...+++..+.... +...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 445555555554444443211 3333444444444333
No 136
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.67 E-value=9.7e-07 Score=69.61 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHH
Q 010853 303 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 382 (499)
Q Consensus 303 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (499)
..+..+...+...|++++|...+.+.+... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344555566666677777777666655433 2345556666666777777777777777776653 3456667777777
Q ss_pred HHhcCChhhHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 010853 383 LCESNQLDEAKRFWDDIVWPSNIHDNYVYA--AMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+...|++++|...++++....+. +...+. ..+..+...|++++|++.+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77778888888887777655433 333443 33333666778888888777654
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.66 E-value=8.3e-07 Score=66.92 Aligned_cols=120 Identities=8% Similarity=-0.071 Sum_probs=100.3
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHH
Q 010853 335 SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAM 414 (499)
Q Consensus 335 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 414 (499)
+.+...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|...++++.+.... +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 4456778888899999999999999999998875 457888999999999999999999999999876543 67789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
..++...|++++|.+.|++..+.... +...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 99999999999999999999887432 4556666766666555
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=2.3e-07 Score=78.48 Aligned_cols=198 Identities=9% Similarity=-0.081 Sum_probs=131.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHHhccCCCCCch------------
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTI-------IFGLLNVGRIQEALNLLYQVMPQRGYSPGI------------ 338 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------ 338 (499)
..++...|.+.|.++.... +.....|..+ ...+...++..+++..+.+.+ ++.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCccc
Confidence 4677788888888777654 3445556555 334444334444444443322 222211
Q ss_pred ----------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC-
Q 010853 339 ----------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD- 407 (499)
Q Consensus 339 ----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 407 (499)
.........+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 122345566778899999999998888754 443355666668889999999999998665432 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 408 -NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 408 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++.. ..|+...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHHHHHHH
Confidence 23677788899999999999999998875433243 33566667788899999999999999987 45665555554
Q ss_pred H
Q 010853 485 D 485 (499)
Q Consensus 485 ~ 485 (499)
.
T Consensus 248 ~ 248 (282)
T 4f3v_A 248 K 248 (282)
T ss_dssp H
T ss_pred h
Confidence 4
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=3.7e-07 Score=74.89 Aligned_cols=120 Identities=13% Similarity=-0.022 Sum_probs=50.7
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccC---CCC-CchhhHHHHHHHHHhcCC
Q 010853 278 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR---GYS-PGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 278 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~ll~~~~~~~~ 353 (499)
..|++++|.+.++.+.... ......+..+...+...|++++|...+.+.+... +.. ....++..+...+...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3455555555333332211 2234455555555555555555555555443211 011 112334444444555555
Q ss_pred HHHHHHHHHHHhhC----CCC--cCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 354 VEEAKEVFNCMLGI----GVV--ADSTTYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 354 ~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+++|...+++..+. +-. ....++..+...+...|++++|...+++.
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555544331 100 01223344444444555555555554444
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=1.4e-06 Score=64.73 Aligned_cols=116 Identities=10% Similarity=0.158 Sum_probs=96.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....+. +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 5677888889999999999999999998764 457788899999999999999999999999866433 67788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 010853 418 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 456 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (499)
+...|++++|...++++.+.... +...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhc
Confidence 99999999999999999987532 455566555555443
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=2.7e-07 Score=70.78 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 420 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 420 (499)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++++....+. +...+..+..+|..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3334444555555555555555555433 334444555555555555555555555555443322 33344445555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 010853 421 SGKIHEAVHFLYELVDS 437 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~ 437 (499)
.|++++|.+.|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=7.4e-07 Score=66.63 Aligned_cols=107 Identities=12% Similarity=0.035 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----hhhHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PN----IVCYNV 448 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 448 (499)
.+..+...+.+.|++++|...|+++++..+. +...|..+..+|...|++++|++.+++.++.+.. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4555666667777777777777776655433 5556667777777777777777777776653211 11 124556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 449 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
+..++...|++++|++.|++..+ ..||+.....|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 66667777777777777777765 34565555444
No 143
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=8.2e-07 Score=76.99 Aligned_cols=192 Identities=9% Similarity=-0.029 Sum_probs=114.5
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 010853 232 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 311 (499)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (499)
..+..+...+...|++++|...++...+..+. +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34555566666677777777777766665432 66777788888888888888888888887654 5567778888888
Q ss_pred HHccCCHHHHHHHHHHHhccCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChh
Q 010853 312 LLNVGRIQEALNLLYQVMPQRGYSPGI-VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 312 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
+...|++++|...|.+.+... |+. ..+...+....+ ...+... ........+.+......+... ..|+++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 888888888888887766432 211 111111111111 1111111 122222334454444444332 257888
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHFLYELVD 436 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 436 (499)
+|.+.++...+..+. +......+...+.+. +.+++|.++|.++.+
T Consensus 153 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888877654321 333334444444444 567788888887654
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.1e-06 Score=65.62 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=59.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|+..+++..+.+.. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34455555666666666666666666554332 4556666666666666666666666666665422 455666666666
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|...+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666666666666666654
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=4.3e-07 Score=78.75 Aligned_cols=194 Identities=9% Similarity=0.030 Sum_probs=130.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHH
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 344 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 344 (499)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...+.+.+... +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45677788889999999999999999998764 4578899999999999999999999999977543 4456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 424 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (499)
..++...|++++|...|+...+.. +.+...+...+....+.. .+.. +..........+......+... ..|++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 899999999999999999987642 111111111222211111 1111 1112222333344444444332 26889
Q ss_pred HHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010853 425 HEAVHFLYELVDSGVTPNI-VCYNVVIDGACKL-SMKREAYQILREMRK 471 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 471 (499)
++|++.+++..+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988887765 4443 3333343334444 667889999987754
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.59 E-value=4.7e-07 Score=69.76 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
...+..+...+.+.|++++|...|+.+.+.. +.+...|..+..+|...|++++|...|+++....+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 4456667777788888888888888888765 456777888888888888888888888888766544 56677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 010853 418 LCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~ 438 (499)
|...|++++|...|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888764
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.58 E-value=4.1e-07 Score=72.77 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=70.4
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-LCRSGKI--HE 426 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 426 (499)
..|++++|...++...+.. +.+...+..+..+|...|++++|...++++....+. +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 4456666666666665543 345566666666666667777777766666544332 44555566666 5566666 66
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 427 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|...++++.+.+.. +...+..+...|...|++++|...++++.+
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77666666665422 445566666666666777777777666665
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=6.4e-07 Score=69.07 Aligned_cols=100 Identities=14% Similarity=0.020 Sum_probs=80.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...++++....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44556667777888899999999998888764 557778888888888999999999999888766543 5667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 010853 417 GLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|...|++++|.+.|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999998888753
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.56 E-value=1.5e-06 Score=77.43 Aligned_cols=94 Identities=4% Similarity=-0.114 Sum_probs=60.2
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
.++..+..+|.+.|++++|...+++++...+. +...|..+..+|...|++++|+..|++..+.... +...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 55666666677777777777777776655433 5556666777777777777777777777665422 455666666666
Q ss_pred HhcCChHHH-HHHHHHH
Q 010853 454 CKLSMKREA-YQILREM 469 (499)
Q Consensus 454 ~~~g~~~~a-~~~~~~m 469 (499)
...|+.++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 667776666 3344444
No 150
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=2.5e-06 Score=63.92 Aligned_cols=95 Identities=18% Similarity=0.119 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 010853 268 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 347 (499)
Q Consensus 268 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~ 347 (499)
.+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...+.+.+... +.+...+..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHH
Confidence 33444444444445555544444444322 2234444444444444444444444444433221 1123333334444
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 010853 348 LFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~ 366 (499)
+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4444444444444444443
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3e-06 Score=63.24 Aligned_cols=97 Identities=11% Similarity=-0.010 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+......+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 345556666777788888888888777654 446677777888888888888888888887765543 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 010853 419 CRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~ 437 (499)
...|++++|.+.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887765
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=2.7e-06 Score=75.83 Aligned_cols=96 Identities=8% Similarity=0.022 Sum_probs=73.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 338 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 338 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
...|..+..++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3567777778888888888888888887764 456778888888888888888888888888766543 56677888888
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 010853 418 LCRSGKIHEA-VHFLYELV 435 (499)
Q Consensus 418 ~~~~g~~~~a-~~~~~~~~ 435 (499)
+...|+.++| ...++.|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888877 44566654
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.49 E-value=6.6e-06 Score=60.23 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=62.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...++......+. +...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 44555666666677777777777666554332 4556666667777777777777777777665422 455666666777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777765
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=7.6e-06 Score=59.89 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 418 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 418 (499)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...++++....+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345555566666777777777777666543 335566666667777777777777777776654332 455666777777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 010853 419 CRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 419 ~~~g~~~~a~~~~~~~~~~~ 438 (499)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77777777777777776653
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.43 E-value=2.8e-06 Score=66.85 Aligned_cols=100 Identities=8% Similarity=-0.034 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++++...+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45567777777888888888888888887764 446777888888888888888888888888766543 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 010853 417 GLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+|...|++++|.+.|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887764
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.43 E-value=0.00021 Score=62.35 Aligned_cols=187 Identities=11% Similarity=0.060 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC-HHHHH
Q 010853 282 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG--RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VEEAK 358 (499)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~ 358 (499)
+++++.+++.+.... +.+..+|+.-...+.+.+ .+++++..+.+++... +-+...|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 344555555555433 344455554444444444 2555555555554433 2334444444444444454 35555
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhc--------------CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCES--------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS--- 421 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 421 (499)
+.++.+.+.. +-|...|+.....+... +.++++.+.+...+...+. |...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc
Confidence 5555555543 33444454444333332 3355666666666655443 555665444333333
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 422 --------GKIHEAVHFLYELVDSGVTPNIVCYNVVID---GACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 422 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
+.++++++.++++.+..+. +..++..++. +....|..+++...+.++.+ +.|-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~ 307 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPM 307 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGG
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcc
Confidence 3467888888888876432 2222222221 11235667788888888876 4553
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.43 E-value=2.6e-06 Score=65.19 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=73.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+...+..+...+...|++++|...|+.+...++. +...|..+..+|...|++++|+..|++....+.. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 3445566667777888888888888887765543 6667777888888888888888888888876533 5667777777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMRK 471 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~~ 471 (499)
+|...|++++|.+.|++..+
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888765
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=3e-07 Score=75.17 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=48.9
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
.++..+..+|...|++++|...++.+....+. +...+..+..+|...|++++|.+.|++..+.... +...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence 44555555666666666666666666544322 4455666666666666666666666666655322 444555555555
Q ss_pred HhcCChHHHH-HHHHHHH
Q 010853 454 CKLSMKREAY-QILREMR 470 (499)
Q Consensus 454 ~~~g~~~~a~-~~~~~m~ 470 (499)
...++.+++. ..+..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555444 3344443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.41 E-value=4.8e-06 Score=62.12 Aligned_cols=104 Identities=11% Similarity=0.112 Sum_probs=70.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC--CC----HHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HD----NYVYAA 413 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 413 (499)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++.++..+. ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777777654 445667777777777778877777777776543211 11 135667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 446 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 446 (499)
+..++...|++++|++.|++.+.. .||+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 777888888888888888887765 3454443
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=7.9e-06 Score=61.90 Aligned_cols=97 Identities=8% Similarity=-0.020 Sum_probs=49.5
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+...+..+...+...|+++.|...++......+. +...|..+..++...|++++|...+++..+.+.. +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 3444445555555555555555555555443322 3445555555555555555555555555554322 3445555555
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 010853 452 GACKLSMKREAYQILREMR 470 (499)
Q Consensus 452 ~~~~~g~~~~a~~~~~~m~ 470 (499)
++...|++++|...+++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555554
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.7e-05 Score=60.80 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=73.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVV 449 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 449 (499)
+...+..+...+...|++++|...+++..+..... ....|..+..+|...|++++|.+.+++..+.... +...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 45556666666677777777777777766543221 0456666777777777777777777777765322 45666677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHhc
Q 010853 450 IDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 489 (499)
Q Consensus 450 ~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 489 (499)
..++...|++++|...+++..+ +.|+ ...+..+..+..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHh
Confidence 7777777777777777777766 3343 344444444443
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.1e-05 Score=74.92 Aligned_cols=201 Identities=8% Similarity=-0.070 Sum_probs=118.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNS----------------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 86 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (499)
..-+.+.|++++|++.|..+.+....... .++..++..|.+.|++++|...+.++....+....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45568899999999999999875422111 23677888899999999998888777665543211
Q ss_pred CccCHHhHHHHHHHHHcCCCHhHHHHHHHhccC----CC-CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc--CCC-
Q 010853 87 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----GK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--GLT- 158 (499)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--g~~- 158 (499)
......+.+.+...+...|+.++|..+++.... .+ ......++..+...+...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 111112233333444456777777777665432 11 1122345566777777777777777777765443 111
Q ss_pred -C-ChhhHHHHHHHHHccCChhHHHHHHHHHHhC----CCCCC--cccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 159 -P-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLPS--EHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 159 -p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|+++.|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1235666667777777777777777665432 11111 1234444555566666666666655543
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=5.4e-06 Score=62.07 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----hhhHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PN----IVCYNV 448 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 448 (499)
.+..+...+...|+++.|...++++....+. +...+..+...+...|++++|...++++.+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4445555555566666666666655543322 4445555666666666666666666665543211 11 445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 010853 449 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKL 487 (499)
Q Consensus 449 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 487 (499)
+..++...|++++|.+.++++.+. .|+...+..+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 666666666666666666666552 3444444444433
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.39 E-value=5.6e-06 Score=67.48 Aligned_cols=156 Identities=9% Similarity=-0.091 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCc--------------hhhHH
Q 010853 277 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG--------------IVTYN 342 (499)
Q Consensus 277 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~ 342 (499)
...|+++++.+.++.-.... ......+..+...+...|++++|+..|.+.+....-.|+ ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 33455555555554222111 223455666777777888888888888776654432221 15666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 422 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (499)
.+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++.....+. +...+..+..++...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHH
Confidence 67777777888888888888777754 446677777777888888888888888877655433 5556666666666666
Q ss_pred CHHHHH-HHHHHHHH
Q 010853 423 KIHEAV-HFLYELVD 436 (499)
Q Consensus 423 ~~~~a~-~~~~~~~~ 436 (499)
+.+++. ..+..+..
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 666555 44444443
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.38 E-value=3.4e-06 Score=62.35 Aligned_cols=92 Identities=11% Similarity=-0.062 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 457 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (499)
.+...+.+.|++++|...++++.+..+. +...|..+..++...|++++|+..|++..+..+. +...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 3444455555555555555555544332 4445555555555556666666666555554322 3445555555555566
Q ss_pred ChHHHHHHHHHHHH
Q 010853 458 MKREAYQILREMRK 471 (499)
Q Consensus 458 ~~~~a~~~~~~m~~ 471 (499)
++++|+..+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=8.1e-06 Score=64.16 Aligned_cols=99 Identities=9% Similarity=-0.003 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
+...+..+...+...|++++|+..|.+.+... +.+...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45556666666777777777777776665443 2345566666666777777777777777766654 33566666666
Q ss_pred HHHHhcCChhhHHHHHHHHhcC
Q 010853 381 DGLCESNQLDEAKRFWDDIVWP 402 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~ 402 (499)
.+|...|++++|...|+++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777766543
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.36 E-value=4.8e-06 Score=60.36 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT-PNIVCYNVVIDG 452 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 452 (499)
..+..+...+...|++++|...++++.+.... +...|..+..++...|++++|.+.+++..+.... .+...+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 34444555555556666666665555543322 4445555566666666666666666666554211 034455555566
Q ss_pred HHhc-CChHHHHHHHHHHHH
Q 010853 453 ACKL-SMKREAYQILREMRK 471 (499)
Q Consensus 453 ~~~~-g~~~~a~~~~~~m~~ 471 (499)
+... |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 6666 666666666666554
No 168
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.1e-05 Score=73.09 Aligned_cols=199 Identities=9% Similarity=-0.024 Sum_probs=89.9
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCCH----------------hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 010853 238 LRALCLIKNPTELLNVLVFMLQTQCQPDV----------------ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD 301 (499)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 301 (499)
.+.+...|++++|.+.+..+.+....... ..+..+...|...|++++|.+.+..+.+.....++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34455666777777777666654332211 12445555666666666666666554432110111
Q ss_pred HH----HHHHHHHHHHccCCHHHHHHHHHHHhccC---CC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CC--
Q 010853 302 AV----TFTTIIFGLLNVGRIQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GV-- 369 (499)
Q Consensus 302 ~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-- 369 (499)
.. ..+.+...+...|+.+.+..++.+.+... +. .....++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 12222223334455555555555443211 11 111234444555555555555555555554321 00
Q ss_pred -CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCC--C-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 370 -VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--N-IH-D--NYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 370 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+....++..++..|...|++++|..++++..... . .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1112344555555555555555555555443110 0 11 0 12334444444555555555555555443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=1.2e-05 Score=60.81 Aligned_cols=99 Identities=11% Similarity=-0.073 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++.+....+. +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 45566677777777788888888777777654 445677777777888888888888888877765443 5667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 010853 417 GLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~ 437 (499)
++...|++++|...|++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888887764
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=1.2e-05 Score=60.09 Aligned_cols=92 Identities=12% Similarity=-0.037 Sum_probs=50.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHH
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN---IVCYNVVIDGA 453 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 453 (499)
+...+...|++++|...++.+....+... ...+..+..++...|++++|...|+++.+.... + ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHH
Confidence 34455556666666666665554332211 134555556666666666666666666654322 2 34455555566
Q ss_pred HhcCChHHHHHHHHHHHH
Q 010853 454 CKLSMKREAYQILREMRK 471 (499)
Q Consensus 454 ~~~g~~~~a~~~~~~m~~ 471 (499)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666655
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.31 E-value=4.8e-06 Score=62.37 Aligned_cols=110 Identities=9% Similarity=0.121 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC--CC----HHHHH
Q 010853 339 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI--HD----NYVYA 412 (499)
Q Consensus 339 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 412 (499)
..+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...++++...... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777766653 345666667777777777777777777776543221 11 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
.+..++...|++++|.+.|+++.+.. |+......+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 77778888888888888888887753 35444444433
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=0.00074 Score=58.93 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Q 010853 249 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR-IQEALNLL 325 (499)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 325 (499)
+++.+++.+....++ +..+|+.-.-++...+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.+
T Consensus 92 ~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 92 AELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444444443322 3444444433444444 2455555555555443 3444444444444444444 34555555
Q ss_pred HHHhccCCCCCchhhHHHHHHHHHhc--------------CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhc-----
Q 010853 326 YQVMPQRGYSPGIVTYNAVLRGLFRL--------------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES----- 386 (499)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 386 (499)
.+++... +-|...|+.....+.+. +.++++++.+....... +-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 5544333 22333333333333222 33566666666666543 44555555444444433
Q ss_pred ------CChhhHHHHHHHHhcCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHcC
Q 010853 387 ------NQLDEAKRFWDDIVWPSNIHDNYVYAAMI---KGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 387 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+.++++.+.++++.+..+. +.-.+..++ ......|..+++...+.++++.+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3466777777777654332 222222222 12224567788888888888764
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.31 E-value=9.6e-06 Score=58.69 Aligned_cols=96 Identities=16% Similarity=0.076 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHH
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLC 419 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~ 419 (499)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.... .+...+..+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3344444445555555555555544432 223444455555555555555555555555433211 02344555555555
Q ss_pred hc-CCHHHHHHHHHHHHHc
Q 010853 420 RS-GKIHEAVHFLYELVDS 437 (499)
Q Consensus 420 ~~-g~~~~a~~~~~~~~~~ 437 (499)
.. |++++|.+.+++....
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 55 5555555555555544
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.30 E-value=4.2e-06 Score=65.44 Aligned_cols=137 Identities=12% Similarity=-0.033 Sum_probs=81.0
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCC----C-CCch
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK----S-VNEE 126 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~ 126 (499)
.++..+...+...|++++|...+.+.++..+...+......++..+...+...|++++|.+.++...+.. . ....
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4566777778888888888888877776655542322223466667777777777777777776654321 1 0113
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRG----LTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (499)
.++..+...+...|++++|.+.+++..+.. ..+ ....+..+...+...|++++|.+.+++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345556666667777777777666654331 000 12344555555666666666666665544
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.5e-05 Score=59.94 Aligned_cols=99 Identities=15% Similarity=0.065 Sum_probs=67.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcC----HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 412 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 412 (499)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...+++.....+. +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 34455666666677777777777777776643 33 456666777777777777777777777654332 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 413 AMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 413 ~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
.+..++...|++++|...|++..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777777888888888887777653
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.25 E-value=8.5e-06 Score=60.14 Aligned_cols=96 Identities=14% Similarity=-0.016 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 419 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 419 (499)
.+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...++++.+..+. +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34455666778888888888888888764 456777888888888888888888888888776544 5667788888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 010853 420 RSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 420 ~~g~~~~a~~~~~~~~~~ 437 (499)
..|++++|...+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888888764
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=1.6e-05 Score=62.26 Aligned_cols=62 Identities=21% Similarity=0.110 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 409 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 409 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
..|..+..+|.+.|++++|+..+++.++.+.. +...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 35555666666666666666666666665422 455566666666666666666666666655
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=4.2e-06 Score=61.46 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=50.9
Q ss_pred cCChhhHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHH
Q 010853 386 SNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 463 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 463 (499)
.|++++|...|+++++.+. +.+...+..+..+|...|++++|++.|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 4566666666666665431 123345666666677777777777777777665433 4556666666677777777777
Q ss_pred HHHHHHHH
Q 010853 464 QILREMRK 471 (499)
Q Consensus 464 ~~~~~m~~ 471 (499)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.17 E-value=6.5e-06 Score=77.12 Aligned_cols=116 Identities=10% Similarity=-0.054 Sum_probs=58.0
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
.+.|++++|.+.+++..+.. +.+..++..+..+|.+.|++++|...++++.+..+. +...|..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555555442 234555555555555566666666666555544332 4445555555666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH--HHhcCChHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDG--ACKLSMKREAYQILR 467 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 467 (499)
+.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666665554321 22333333333 555555555555555
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.2e-05 Score=62.70 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=101.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHH
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVL-PN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 96 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (499)
+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+.+.++..+...+.......+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 344448899999999999998764211 11 1478889999999999999999999988876655333334567888
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCC----CC-CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQG----KS-VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
+...+...|++++|.+.+++..+. +. .....++..+...+...|++++|.+.+++..+.
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 899999999999999998886532 11 112356777888899999999999999887654
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=7.9e-05 Score=55.51 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH---HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC--HHHHHHHHHH
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD--NYVYAAMIKG 417 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~ 417 (499)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++.+....+... ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455667778888888877777643 2222 4666677777788888888888887765443311 4566777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 010853 418 LCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 418 ~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|++++|...|+++.+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888887763
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.11 E-value=3.8e-05 Score=69.17 Aligned_cols=91 Identities=5% Similarity=-0.082 Sum_probs=62.9
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
+..+|..+..+|.+.|++++|...++++++..+. +...|..+..+|...|++++|++.|++..+.... +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4456777777778888888888888887765433 5667777778888888888888888887776422 4556666666
Q ss_pred HHHhcCChHHHHH
Q 010853 452 GACKLSMKREAYQ 464 (499)
Q Consensus 452 ~~~~~g~~~~a~~ 464 (499)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.10 E-value=7.3e-06 Score=60.13 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHhcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 010853 245 KNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 322 (499)
Q Consensus 245 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 322 (499)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 34444444444444432 11133445555555556666666666666555443 334555555555566666666666
Q ss_pred HHHHHHhccC
Q 010853 323 NLLYQVMPQR 332 (499)
Q Consensus 323 ~~~~~~~~~~ 332 (499)
..+.+.+...
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6555554433
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=4.3e-05 Score=71.25 Aligned_cols=88 Identities=7% Similarity=-0.090 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
.+|..+..+|.+.|++++|...+++++...+. +...|..+..+|...|++++|+..|+++.+.... +...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44555555566666666666666665544332 4455555566666666666666666666554321 334555555555
Q ss_pred HhcCChHHHH
Q 010853 454 CKLSMKREAY 463 (499)
Q Consensus 454 ~~~g~~~~a~ 463 (499)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=0.00018 Score=54.75 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC-ChhhH----HHHHHHHHhcCChHHHHHHHHHHHH-----CCC
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDS-----GVTP-NIVCY----NVVIDGACKLSMKREAYQILREMRK-----NGL 474 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~-~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~ 474 (499)
.|..+..++.+.|++++|+..+++.++. .+.| +...| .....++...|++++|+..|++..+ .|+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777777765 1123 44566 7777777788888888888877754 455
Q ss_pred CCCHhHHHHHH
Q 010853 475 NPDAVTWRILD 485 (499)
Q Consensus 475 ~p~~~~~~~l~ 485 (499)
.+........+
T Consensus 139 ~~~~~~~~~~~ 149 (159)
T 2hr2_A 139 TPGKERMMEVA 149 (159)
T ss_dssp CTTHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55444444333
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=3.3e-05 Score=72.33 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=66.4
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCH
Q 010853 239 RALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 318 (499)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (499)
..+.+.|++++|.+.+++..+.... +...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence 3455566666777666666665322 45566666666666666666666666666553 34556666666666666666
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRG--LFRLRRVEEAKEVFN 362 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~ 362 (499)
++|.+.+++.++...- +...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666665544322 22233333333 555566666666665
No 187
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=6.3e-05 Score=70.13 Aligned_cols=130 Identities=10% Similarity=0.043 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC-------------chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 010853 304 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-------------GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 370 (499)
Q Consensus 304 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 370 (499)
.+..+...+.+.|++++|+..|.+.+......+ ....|..+..++.+.|++++|+..+++..+.. +
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 344444455555555555555555443221111 14567777888888888888888888888764 4
Q ss_pred cCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 010853 371 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH-FLYELV 435 (499)
Q Consensus 371 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~~~ 435 (499)
.+...+..+..+|...|++++|...|+++.+..+. +...+..+..++...++.+++.+ .++.|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888889999999998888765443 44577778888888887776653 444444
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.05 E-value=6.6e-05 Score=58.71 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=51.3
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 372 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+...|..+..+|.+.|++++|...++.++..++. +...|..+..+|...|++++|...|++..+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 3456777778888888888888888888766543 66678888888888888888888888888763
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.03 E-value=6.9e-05 Score=67.50 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=69.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 337 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
+...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+++.+..+. +...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34567778888888889999999988888764 446778888888888999999999999888765443 5666777777
Q ss_pred HHHhcCCHHHHHH
Q 010853 417 GLCRSGKIHEAVH 429 (499)
Q Consensus 417 ~~~~~g~~~~a~~ 429 (499)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666544
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.03 E-value=0.00033 Score=66.84 Aligned_cols=135 Identities=10% Similarity=0.049 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC--ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHF 430 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~ 430 (499)
++++++.++.+.+.. +-+..+|..-..++.+.+ +++++...++++.+.++. +..+|+.-..++.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 666777777766654 345566666666666666 557777777777666544 6666766666666666 67777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhc--------------CChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHhcccCC
Q 010853 431 LYELVDSGVTPNIVCYNVVIDGACKL--------------SMKREAYQILREMRKNGLNP-DAVTWRILDKLHGNRGN 493 (499)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~ 493 (499)
++++++.++. |...|+.....+.+. +.++++++.++++.. +.| |...|..+-.++.+.|.
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCC
Confidence 7777666544 566666665555542 446778888877776 334 56677777777776665
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.95 E-value=0.00054 Score=65.41 Aligned_cols=173 Identities=9% Similarity=-0.023 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhc
Q 010853 282 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR----------IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL 351 (499)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 351 (499)
.++|++.++++.... +.+...|+.--.++...++ ++++++.+++++... +-+..+|+.-.-++.+.
T Consensus 45 ~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 456677777777654 4445556555555555555 778888887776554 44555666666666777
Q ss_pred C--CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-------
Q 010853 352 R--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS------- 421 (499)
Q Consensus 352 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~------- 421 (499)
+ +++++++.++++.+.. +-+..+|+.-..++.+.| .++++.+.++++++.++. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 7 6688888888888765 457777777777777777 788888888888776655 677777776666553
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHH
Q 010853 422 -------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 461 (499)
Q Consensus 422 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (499)
+.++++++.+++++...+. |...|..+-..+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999999887543 67788887777777666443
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.92 E-value=0.00052 Score=51.76 Aligned_cols=111 Identities=4% Similarity=-0.062 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEA 427 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 427 (499)
+++++|..+|++..+.| .++.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677777777777776 33333 6666666677777888888777653 55667777777776 6788888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHCC
Q 010853 428 VHFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNG 473 (499)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 473 (499)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887764 45667777777777 778888888888887766
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=4.6e-05 Score=67.83 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 341 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 341 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
|..+..++.+.|++++|...++...+.. +.+...+..+..+|...|++++|...|+++.
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444555555555555444432 2234444444444444555555555544443
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.91 E-value=5.6e-05 Score=57.59 Aligned_cols=102 Identities=13% Similarity=-0.016 Sum_probs=58.9
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCC------ccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCC-----
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDL------SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----- 120 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 120 (499)
..+......+.+.|++++|...|.+.++..+..+.. ..+...|..+..++.+.|++++|+..++...+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345667777888888888888888888766552110 011225666666666666666666665555443
Q ss_pred --CCCCchhhH----HHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 121 --KSVNEEFAC----GHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 121 --~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
++ .+..+| .....++...|++++|+..|++..+
T Consensus 92 e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 32 233344 4455555555555555555555443
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=2.9e-05 Score=69.18 Aligned_cols=149 Identities=8% Similarity=-0.024 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHH
Q 010853 301 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 380 (499)
Q Consensus 301 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 380 (499)
....+..+...+.+.|++++|...|.+.+... |+... +...++.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 35556677777888888888888888766432 33221 222333333332221 13678888
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-HHhcCCh
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMK 459 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~ 459 (499)
.+|.+.|++++|...+++++...+. +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876543 6778999999999999999999999998765422 44455555544 3345667
Q ss_pred HHHHHHHHHHHH
Q 010853 460 REAYQILREMRK 471 (499)
Q Consensus 460 ~~a~~~~~~m~~ 471 (499)
+.+..+|+.|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 788888888875
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.00011 Score=68.42 Aligned_cols=124 Identities=13% Similarity=0.018 Sum_probs=84.6
Q ss_pred HHhcCCHHHHHHHHHHHhhC-----C--CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhc-----CCCC-C-CHHHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGI-----G--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSNI-H-DNYVYAA 413 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~ 413 (499)
+...|++++|+.++++..+. | .+....+++.|..+|...|++++|..++++... .|.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45677888888777766532 1 112245678888888888888888888877642 2221 2 2236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVD-----SGVT-PN-IVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|...|...|++++|..++++..+ .|.. |+ ..+.+.+..++...+++++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999998888888764 2322 22 23456666777788888999999888875
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.80 E-value=4.5e-05 Score=57.97 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh----------hhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 010853 348 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL----------DEAKRFWDDIVWPSNIHDNYVYAAMIKG 417 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~li~~ 417 (499)
..+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++.++.++. +...|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 345556777777777777654 44666676666666666554 3666666666555443 44556666666
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHc
Q 010853 418 LCRSG-----------KIHEAVHFLYELVDS 437 (499)
Q Consensus 418 ~~~~g-----------~~~~a~~~~~~~~~~ 437 (499)
|...| ++++|++.|++.++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 66553 566666666666654
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.76 E-value=0.00032 Score=50.96 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=35.2
Q ss_pred HHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 357 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 357 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
|...|++..+.. +.+...+..+..+|...|++++|...++++....+. +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 233444444444455555555555555544433222 333444444444455555555554444443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.74 E-value=0.00017 Score=67.16 Aligned_cols=128 Identities=8% Similarity=-0.107 Sum_probs=79.1
Q ss_pred HhcCChHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc-cCCccC-HHhHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCG---VLP----NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEE-EDLSVN-NAAFANL 97 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-~~~~~~l 97 (499)
..+|++++|+.++++.++.. ..| ...+++.|..+|..+|++++|..++.++++..... +...|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 57888999988888876421 112 23567888888888999999988888877654432 122333 3467777
Q ss_pred HHHHHcCCCHhHHHHHHHhccC-----CCCC-Cc-hhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQ-----GKSV-NE-EFACGHMIDSLCRSGRNHGASRVVYVMRK 154 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 154 (499)
...|...|++++|..++++... .|.. |+ ..+.+.+-.++...+.+++|..+|..+++
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777887777777666432 1210 11 22333444555555666666666665554
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.71 E-value=0.00029 Score=51.17 Aligned_cols=79 Identities=10% Similarity=-0.022 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 470 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 470 (499)
.|...++++.+..+. +...+..+..+|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666654433 5566777777777777777777777777766422 45566777777777777777777777765
Q ss_pred H
Q 010853 471 K 471 (499)
Q Consensus 471 ~ 471 (499)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00048 Score=47.24 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
.+..+...+...|++++|...+++..+... .+...+..+..++...|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444444444444444444444321 1333444444444444444444444444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00019 Score=51.64 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+..+...+...|++++|...+++.....+. +...|..+..++...|++++|++.+++..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555543322 4445555555555555566665555555544
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.63 E-value=0.0024 Score=48.06 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHHc
Q 010853 421 SGKIHEAVHFLYELVDS 437 (499)
Q Consensus 421 ~g~~~~a~~~~~~~~~~ 437 (499)
.+++++|.+.|++..+.
T Consensus 110 ~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 34444444444444443
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00052 Score=49.25 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------Hh
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-------AV 479 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~~ 479 (499)
+...|..+...+...|++++|++.|++..+.... +...+..+..++...|++++|++.+++..+ +.|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHH
Confidence 4567888999999999999999999999987533 678899999999999999999999999987 4565 44
Q ss_pred HHHHHHHHhcccCC
Q 010853 480 TWRILDKLHGNRGN 493 (499)
Q Consensus 480 ~~~~l~~~~~~~g~ 493 (499)
.+..+..++...|+
T Consensus 80 ~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 80 LQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.57 E-value=0.00023 Score=54.10 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=66.0
Q ss_pred hcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 010853 385 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI----------HEAVHFLYELVDSGVTPNIVCYNVVIDGAC 454 (499)
Q Consensus 385 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (499)
+.+.+++|...++...+..+. +...|..+..++...+++ ++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 445667777777777665544 666676666677666553 4777777777776433 5566777777776
Q ss_pred hcC-----------ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHh
Q 010853 455 KLS-----------MKREAYQILREMRKNGLNPDAVTWRILDKLH 488 (499)
Q Consensus 455 ~~g-----------~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 488 (499)
..| ++++|++.|++..+ +.|+...|..-++..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 653 67777777777776 567666666555443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.54 E-value=0.00042 Score=48.79 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHhHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG-LNPDAVTWRILD 485 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~ 485 (499)
+...+..+..+|...|++++|++.|++..+.+.. +...|..+..+|...|++++|.+.+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 3445555666666666666666666666655422 34455556666666666666666666554311 123444444444
Q ss_pred HHhcccC
Q 010853 486 KLHGNRG 492 (499)
Q Consensus 486 ~~~~~~g 492 (499)
..+...+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 4444433
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.52 E-value=0.0009 Score=45.83 Aligned_cols=79 Identities=9% Similarity=0.135 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 453 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (499)
..+..+...+...|++++|...+++.....+. +...+..+..++...|++++|.+.+++..+.... +...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34444455555555555555555555443222 3445555555555556666666655555554321 334444444444
Q ss_pred H
Q 010853 454 C 454 (499)
Q Consensus 454 ~ 454 (499)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.40 E-value=0.00052 Score=48.31 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=33.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 010853 265 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 329 (499)
Q Consensus 265 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 329 (499)
+...+..+..+|...|++++|+..|++..+.. +.+...|..+..+|...|++++|.+.+.+.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555443 2334455555555555555555555555543
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.33 E-value=0.0052 Score=53.91 Aligned_cols=76 Identities=18% Similarity=0.099 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 010853 405 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 484 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 484 (499)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 3466677777777777788888888888888875 6777777777788888888888888888877 56777666544
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.32 E-value=6.1e-06 Score=73.55 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=163.9
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhH
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 129 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 129 (499)
.+..|+.|..+..+.+...+|+.-| + -.-|+..|..++....+.|.+++-++.+....+.. .++..=
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy------I-----kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY------I-----KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS------C-----CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH------H-----hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccH
Confidence 4567999999999999998886532 1 12255677789999999999999999988877664 344555
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCC------------------
Q 010853 130 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG------------------ 191 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------ 191 (499)
+.|+-+|++.++..+-.+.+. .||..-...+.+-|...|.++.|.-+|..+....
T Consensus 120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999876544332 4677777888888888888888887776543211
Q ss_pred --CCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhH
Q 010853 192 --YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 269 (499)
Q Consensus 192 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (499)
-.-+..||..+-.+|...+++..|.-.--.+.-.... ...++..|-..|.+++.+.+++.-.... ......|
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmF 266 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 266 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHH
Confidence 1235677888888888888777776555444422211 2234566777888888888877666322 3456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------CHHHHHHHHHHHHccCCHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAP-------DAVTFTTIIFGLLNVGRIQEALN 323 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~ 323 (499)
+-|.-.|++- ++++..+-++..-.+-. .| ....|..++..|.+-.+++.|..
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriN-ipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVN-IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSC-CTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777765 44444444443322211 22 23457777777777777776654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.96 E-value=0.012 Score=51.71 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=51.2
Q ss_pred CcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 010853 370 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 447 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 447 (499)
+.+..++..+...+...|+++.|...++++...+ |+...|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566677766666666678888888887777654 56666666777777778888888888777776 34444543
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.92 E-value=0.0039 Score=46.81 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 4444444444444444 3334555555544432 12 223333333444555555555555555544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0067 Score=55.46 Aligned_cols=88 Identities=9% Similarity=-0.114 Sum_probs=41.3
Q ss_pred cCChHHHHHHHHHHHhC---CCCCC----hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcc-CCccCH-HhHHHHHH
Q 010853 29 TGEMDVAYKVFDEMRHC---GVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE-DLSVNN-AAFANLVD 99 (499)
Q Consensus 29 ~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~ 99 (499)
.|++++|+.++++.++. -..|+ ..+++.|..+|..+|++++|..++.++++-..... ...|++ .+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35556666666555431 11111 23455556666666666666665555554333221 122222 24444555
Q ss_pred HHHcCCCHhHHHHHHHh
Q 010853 100 SLCREGYVNEVFRIAED 116 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~ 116 (499)
.|..+|++++|..++++
T Consensus 391 ~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 391 LYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHH
Confidence 55555555555444444
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.82 E-value=0.023 Score=57.28 Aligned_cols=123 Identities=12% Similarity=0.050 Sum_probs=69.5
Q ss_pred HHcCCCHhHHHH-HHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhH
Q 010853 101 LCREGYVNEVFR-IAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMR 179 (499)
Q Consensus 101 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~ 179 (499)
....+++++|.+ ++..+. +......++..+.+.|..+.|+++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345677777766 443322 011225566667777777777765521 1 111333456777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHH
Q 010853 180 AYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 256 (499)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (499)
|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. +..+...+...++.+...++.+.
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77775432 3556777777777788888888777776631 33344444445555444444333
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.81 E-value=0.017 Score=39.64 Aligned_cols=64 Identities=14% Similarity=-0.008 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 407 DNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 407 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+...+..+..++...++ .++|..++++..+.+.. +......+...+...|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444443332 45555555555554322 444555555555555555555555555554
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.64 E-value=0.0059 Score=55.82 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=12.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHH
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDI 399 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~ 399 (499)
+++.|..+|...|++++|..+++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4444444555555555555444443
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.62 E-value=0.017 Score=39.61 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=45.3
Q ss_pred CcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 370 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
+.+...+..+..++...++ .++|..++++..+.++. +......+...+...|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3455666666666654443 57777777777765544 56666667777777777777777777777654
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.61 E-value=0.019 Score=52.48 Aligned_cols=105 Identities=14% Similarity=0.026 Sum_probs=70.6
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-hhh
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPS---NIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----G-VTPN-IVC 445 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~ 445 (499)
+..+...|++++|..++++..+.. ..+ ...+++.+..+|...|++++|..++++.++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888888776321 112 1236788888888899999999988887642 2 1222 246
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHhHHHHH
Q 010853 446 YNVVIDGACKLSMKREAYQILREMRK---NGLNPDAVTWRIL 484 (499)
Q Consensus 446 ~~~l~~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~l 484 (499)
++.|...|...|++++|+.++++..+ .-+.||......+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88888889999999999998888753 2233554433333
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.59 E-value=0.01 Score=54.28 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCC---CCc----CHHhHHHHHHHHHhcCChhhHHHHHHHHhc-----CCC-CCC-HHH
Q 010853 345 LRGLFRLRRVEEAKEVFNCMLGIG---VVA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSN-IHD-NYV 410 (499)
Q Consensus 345 l~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~ 410 (499)
+..+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|..+++++.. .|. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888776431 112 234677888888888888888888877642 122 122 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 78888899999999999998888764
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.56 E-value=0.13 Score=37.24 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 010853 408 NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGL 474 (499)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 474 (499)
.......+..+..+|+-++-.+++..+.. +-+|++...-.+..||.+.|+..++.+++.++.+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33445555556666666666666655432 2245555666666666666666666666666666654
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.2 Score=50.47 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 010853 270 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 349 (499)
Q Consensus 270 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 349 (499)
..++..+.+.|.++.|.++.++ |. .-.......|++++|.++.+. + .+...|..+...+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~--------~~-----~~f~~~l~~~~~~~A~~~~~~-~------~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD--------QD-----QKFELALKVGQLTLARDLLTD-E------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC--------HH-----HHHHHHHHHTCHHHHHHHHTT-C------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC--------cc-----hheehhhhcCCHHHHHHHHHh-h------CcHhHHHHHHHHHH
Confidence 5555566666666666654421 11 112234456666666665433 1 24556666666666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 429 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 429 (499)
+.++++.|++.|..+.. |..+...+...|+.+...++.+.....+. ++....+|.+.|++++|.+
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 77777777776666543 23344444445555554444444433221 2333334444455555554
Q ss_pred HHH
Q 010853 430 FLY 432 (499)
Q Consensus 430 ~~~ 432 (499)
++.
T Consensus 758 ~~~ 760 (814)
T 3mkq_A 758 LLI 760 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.55 E-value=0.024 Score=39.21 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHhcCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 381 DGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 381 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
..+...|++++|...++++.+..+. +.. .|..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555555443322 333 4555555555555555555555555554
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.51 E-value=0.032 Score=38.60 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 010853 414 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIV-CYNVVIDGACKLSMKREAYQILREMRKN 472 (499)
Q Consensus 414 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 472 (499)
....+...|++++|.+.++++.+.... +.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456778899999999999999987533 566 8888999999999999999999999874
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.23 Score=38.28 Aligned_cols=130 Identities=11% Similarity=0.109 Sum_probs=91.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 309 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 309 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
.......|+++.|.++.++. .+...|..+.......|+++-|++.|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 44566789999999877652 4677899999999999999999999988764 3455556777888
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 468 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 468 (499)
.+....+-+.....+. ++....++...|+++++.++|.+. |-.| -.+......|..+.|.++.++
T Consensus 76 ~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHH
Confidence 8887777766655442 566666777889999999988543 2222 111122335667778888776
Q ss_pred H
Q 010853 469 M 469 (499)
Q Consensus 469 m 469 (499)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.32 E-value=0.04 Score=41.34 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC---ChhhHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 428 (499)
...+.+-|.+..+.| +++..+...+..++++.+ +.+++..+++++.+.+ .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345566666666655 467777777888888877 5668888888887654 22 2344555666778888888888
Q ss_pred HHHHHHHHc
Q 010853 429 HFLYELVDS 437 (499)
Q Consensus 429 ~~~~~~~~~ 437 (499)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888876
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.30 E-value=0.052 Score=38.10 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHhcCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 374 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 374 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.-+..+...+...|++..|...++.+.+.. ..+...++..+..++.+.|++++|..+++++.+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 334444555555555555555555443210 1123334445555555555555555555555443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.22 Score=38.46 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=90.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcC
Q 010853 273 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 352 (499)
Q Consensus 273 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 352 (499)
.......|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.- -+..+.-.|...|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg 74 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhC
Confidence 34556789999999887654 578899999999999999999999987731 2445555567788
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 432 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 432 (499)
+.+....+-+.....| . ++.-...+.-.|+++++.+++.+.. ..|. -+-.....|-.+.|.++.+
T Consensus 75 ~~e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~---r~~e------A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG---SLPL------AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT---CHHH------HHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC---ChHH------HHHHHHHcCcHHHHHHHHH
Confidence 8888777776666655 2 4555556677899999999987652 1111 1112223466777877776
Q ss_pred HH
Q 010853 433 EL 434 (499)
Q Consensus 433 ~~ 434 (499)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.17 E-value=0.23 Score=36.00 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 358 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 358 (499)
.|.+++..++..+... +.+..-|+.++.-....-+-+-..++++..=.-..+ ...|+.....
T Consensus 20 dG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp TTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred hhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 4566666666666554 334444555544444444444444444442211111 1123333333
Q ss_pred HHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 359 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
..+-.+- .+.......+......|.-+.-.+++..+.. +..|++...-.+..+|.+.|+..++.+++.++.+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333221 1233344445555566666666666666432 234455555666666666666666666666666666
Q ss_pred CC
Q 010853 439 VT 440 (499)
Q Consensus 439 ~~ 440 (499)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 43
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.09 E-value=0.041 Score=38.68 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=45.7
Q ss_pred ChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccC-CccCHHhHHHHHHHHHcCCCHhHHHHHHHhccCCC
Q 010853 50 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED-LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGK 121 (499)
Q Consensus 50 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 121 (499)
+...+..+...+.+.+++..|...+..+++..+.... .......+..+..++.+.|+++.|+..++...+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 4556667788888888888888888777776544321 12234455666666666666666666666655433
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.08 E-value=0.056 Score=45.48 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhCCCCcC---HHhHHHHHHHHHh-----cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CCH
Q 010853 354 VEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCE-----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKI 424 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~ 424 (499)
...|...+++..+. .|+ ...|..+...|.. -|+.++|.++|++.++.++.-+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666667776664 344 5577777777777 488888888888887765543466777778888774 888
Q ss_pred HHHHHHHHHHHHcCCC--CChhhHH
Q 010853 425 HEAVHFLYELVDSGVT--PNIVCYN 447 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~--~~~~~~~ 447 (499)
+++.+.+++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887655 5544444
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.00 E-value=0.079 Score=39.23 Aligned_cols=112 Identities=11% Similarity=0.143 Sum_probs=66.4
Q ss_pred chhhHHHHHHHHHhcCCH------HHHHHHHHHHhhCCCCcCHH-hHHHHHH------HHHhcCChhhHHHHHHHHhcCC
Q 010853 337 GIVTYNAVLRGLFRLRRV------EEAKEVFNCMLGIGVVADST-TYAIVID------GLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 337 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .+...+. .+...+|.++|.++|+.+++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 334444444444444555 5666666666653 344321 1111111 1223478888888888886543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 010853 404 NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 451 (499)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 451 (499)
-.. ..+|......-.++|+...|.+++.+.+..+..| ...+...++
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 333 6677777777788888888888888888877654 344444443
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.62 Score=42.78 Aligned_cols=58 Identities=16% Similarity=-0.043 Sum_probs=31.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS-----EHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
..|...+...|++.+|..++.++...-...+ ...+...++.|...+++..|..++.++
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455566666666666666666543211111 123444555566666666666666554
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.93 E-value=0.64 Score=39.18 Aligned_cols=121 Identities=12% Similarity=0.018 Sum_probs=76.4
Q ss_pred CCCHhHHHHHHHhccCCCCCCchhhHHHHHHH-HHhc--CC------hhhHHHHHHHHHhcCCCCC---hhhHHHHHHHH
Q 010853 104 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDS-LCRS--GR------NHGASRVVYVMRKRGLTPS---LVSYNSIVHGL 171 (499)
Q Consensus 104 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~------~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~ 171 (499)
.++..+..+.+.++...+ +....|..++.+ +... |+ ...|..++++..+. .|+ ...|..+...|
T Consensus 134 ~~~~~~~~~~l~~~~~~d--ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVD--VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp SSCHHHHHHHHTTCCGGG--HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccc--cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHH
Confidence 344444444455444322 334455555543 2332 33 35677777777776 455 44778888888
Q ss_pred Hc-----cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCC
Q 010853 172 CK-----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-SDLEKARKVLQFMLSKKDV 228 (499)
Q Consensus 172 ~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 228 (499)
.. -|+.++|.+.|++..+.+..-+..++....+.++.. |+.+.+.+.+++.+.....
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 77 488888888888888754222366777777777774 8888888888888765544
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.90 E-value=0.00022 Score=63.94 Aligned_cols=237 Identities=9% Similarity=0.036 Sum_probs=128.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHH
Q 010853 23 TSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLC 102 (499)
Q Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (499)
..+..+.+++.+|++.|-+. .|+..|..++.+..+.|.+++-...+. |..+. .-++..=+.|+-+|+
T Consensus 61 gkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~-----MaRk~--~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 61 AKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ-----MARKK--ARESYVETELIFALA 127 (624)
T ss_dssp HHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHH-----TTSTT--CCSTTTTHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHH-----HHHHH--hcccccHHHHHHHHH
Confidence 44445556666665544221 245556667777777777666655332 11110 111122233666666
Q ss_pred cCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc--------------------CCCCChh
Q 010853 103 REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--------------------GLTPSLV 162 (499)
Q Consensus 103 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------g~~p~~~ 162 (499)
+.++..+..+.+ ..|+..-...+.+-|...|.++.|.-+|..+..- .-.-++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 666654432211 1133333344555555555555554444333110 0123678
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010853 163 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALC 242 (499)
Q Consensus 163 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (499)
||..+-.+|...+.+.-|.-.--.++- ...-...++..|-..|-+++.+.+++.-. .-......+|.-+.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl-glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL-GLERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT-TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh-CCCchhHHHHHHHHHHHH
Confidence 899999999999988877665444432 22234456777888999999999988876 233445567777777776
Q ss_pred ccCChHHHHHHHHHHHhc-CCC------CCHhhHHHHHHHHHhcCCHHHHH
Q 010853 243 LIKNPTELLNVLVFMLQT-QCQ------PDVITLNTVINGFCKMGRIEEAL 286 (499)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~ 286 (499)
+- ++++..+.++..-.. +++ -....|.-++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 555555555432221 111 02334556666666666666554
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.89 E-value=0.12 Score=38.31 Aligned_cols=107 Identities=9% Similarity=-0.024 Sum_probs=62.5
Q ss_pred CChhhHHHHHHHHhccCCH------HHHHHHHHHHHHHhhhccCCccCHHhHHHHHHH---HHcCCCHhHHHHHHHhccC
Q 010853 49 PNSLTYSVLVRGVLRTRDV------ERANVLMFKLWERMKEEEDLSVNNAAFANLVDS---LCREGYVNEVFRIAEDMPQ 119 (499)
Q Consensus 49 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~ 119 (499)
.|..+|-..+...-+.|+. ++.+.+|.+++..+|....... ..|.-+.-- +...++.++|.++|+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w--rrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN--ESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC--HHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3666777777777777777 7777777778777766521111 122211111 1223677777777776644
Q ss_pred CCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 010853 120 GKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLT 158 (499)
Q Consensus 120 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~ 158 (499)
.+-.- ...|......-.+.|++..|.+++......+.+
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 32222 445555555566677777777777777766555
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.53 E-value=0.1 Score=37.59 Aligned_cols=84 Identities=11% Similarity=0.093 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhh---HHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---AKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAV 428 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~ 428 (499)
....+.+-|......| .++..+-..+..++.+..+... +..+++.+.+.+.. -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3334444444443333 2444444444555555444333 44555554433200 01112223334444555555555
Q ss_pred HHHHHHHHc
Q 010853 429 HFLYELVDS 437 (499)
Q Consensus 429 ~~~~~~~~~ 437 (499)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.34 E-value=0.13 Score=37.12 Aligned_cols=89 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred cCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChH
Q 010853 386 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE---AVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKR 460 (499)
Q Consensus 386 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 460 (499)
......+++-+.+....+. ++..+-..+..++.+..+... ++.+++++...+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344455555555544333 455566666777777766554 777777776653 12 2334445556777788888
Q ss_pred HHHHHHHHHHHCCCCCCH
Q 010853 461 EAYQILREMRKNGLNPDA 478 (499)
Q Consensus 461 ~a~~~~~~m~~~g~~p~~ 478 (499)
+|.+.++.+.+ +.|+.
T Consensus 92 ~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHH--hCCCC
Confidence 88888888776 56644
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.51 E-value=4.4 Score=40.65 Aligned_cols=259 Identities=14% Similarity=0.103 Sum_probs=134.5
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCc--hhhHHHHHHHHhccCChHHHHHHHHHHHhcCC-------CCCHhhHHHHHHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKDVDR--TRICNIYLRALCLIKNPTELLNVLVFMLQTQC-------QPDVITLNTVINGF 276 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 276 (499)
....|+.+++..+++..+..+...+ ...-..+.-+....|..+++..++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566777777777766553211122 22333333444555555567777766654321 01111122222223
Q ss_pred HhcCC-HHHHHHHHHHHhhCCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCC
Q 010853 277 CKMGR-IEEALKVLNDMVAGKFCAPDAVTFT--TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR 353 (499)
Q Consensus 277 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 353 (499)
.-.|. -+++.+.+..+.... .+...... ++...+.-.|+.+....++..++... ..+..-...+.-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence 22332 245555555555432 11111122 23334556677766666666544321 1122222333334457788
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhH--HHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTY--AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
.+.+..+.+.+.... .|....- ..+.-+|+..|+.....++++.+.... ..+..-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888887642 2222222 233456778889888888988887532 223333333334455567766677777
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 010853 432 YELVDSGVTPNIVCYNVVIDGACKLSMK-REAYQILREMRK 471 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 471 (499)
+.+.+.+ .|....-..+..+....|.. .++..++..+..
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6555543 45555444555555555554 567777777763
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.89 E-value=0.51 Score=42.44 Aligned_cols=74 Identities=12% Similarity=0.137 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH-----HCCCCCCHhHHHHHHH
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVTWRILDK 486 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~l~~ 486 (499)
..++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|++.. +.|+.|+..+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445555566666666666666665553 2255566666666666666666666666653 2466666555444333
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.70 E-value=0.66 Score=35.16 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=48.0
Q ss_pred ChhhHHHHHHhcCChHHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 010853 18 PVASLTSALAITGEMDVAYKVFDEMRHCG-VLPNS-------LTYSVLVRGVLRTRDVERANVLMFKLWERM 81 (499)
Q Consensus 18 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (499)
........+...|.++.|+-+.+.+.... ..|+. .++..+.+++...++|.+|...|.++++.-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 45666777799999999998888865431 12332 356778899999999999999998876643
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.36 E-value=7.3 Score=39.14 Aligned_cols=296 Identities=12% Similarity=0.058 Sum_probs=148.5
Q ss_pred HHHHHHHHhcCChhhH-HHHH-HHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcc--cHHHHHHH
Q 010853 130 GHMIDSLCRSGRNHGA-SRVV-YVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH--TYKVLVEG 205 (499)
Q Consensus 130 ~~l~~~~~~~~~~~~A-~~~~-~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 205 (499)
.++.+++...|--... .... +.+.+. ++-...-.+.--+....|+.++++.++......+-..+.. .-..+.-+
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLG 420 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKA--QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLG 420 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHC--CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhcc--chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHH
Confidence 4566777777754333 2111 222222 1111112223334556788888887776544311011111 11223334
Q ss_pred HhcCCCHHHHHHHHHHHHhCCC-------CCchhhHHHHHHHH--hccCChHHHHHHHHHHHhcCCCCCHhhHH--HHHH
Q 010853 206 LCGESDLEKARKVLQFMLSKKD-------VDRTRICNIYLRAL--CLIKNPTELLNVLVFMLQTQCQPDVITLN--TVIN 274 (499)
Q Consensus 206 ~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~ 274 (499)
....|..+++..++...+.... .+....-..+.-++ ...++ +++.+.+..+....- +...... .+..
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGl 498 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGL 498 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhh
Confidence 4556655667777766554321 01111222222333 33343 345555555554321 1111112 2333
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCCchhhHH---HHHHHHHhc
Q 010853 275 GFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN---AVLRGLFRL 351 (499)
Q Consensus 275 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~ll~~~~~~ 351 (499)
.+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.+.+..+++.+.... .|.. -|. ++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~v-Rygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLASD--ESLL-RYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHH-HHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHH-HHHHHHHHHHHhcCC
Confidence 4556678888888888776532 2222223333334446777777777666543222 2222 232 233456778
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 010853 352 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI-HEAVHF 430 (499)
Q Consensus 352 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~ 430 (499)
|+......++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 89888888998888753 2233333333344556778777888887666543 34444334444444444443 678888
Q ss_pred HHHHHH
Q 010853 431 LYELVD 436 (499)
Q Consensus 431 ~~~~~~ 436 (499)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 888864
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.20 E-value=5 Score=36.77 Aligned_cols=242 Identities=8% Similarity=0.065 Sum_probs=132.3
Q ss_pred cCChHHHHHHHHHHHhc-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH----c
Q 010853 244 IKNPTELLNVLVFMLQT-----QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL----N 314 (499)
Q Consensus 244 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 314 (499)
.++++.|.+.+..+.+. ...........++..|...|+++...+.+..+.+..+.. ......+++.+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 36788888877666542 233345567778888999999998888887776654312 222333433322 2
Q ss_pred cCCHH--HHHHHHHHHhccCCCCCc--------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcC---HHhHHHH
Q 010853 315 VGRIQ--EALNLLYQVMPQRGYSPG--------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVAD---STTYAIV 379 (499)
Q Consensus 315 ~~~~~--~a~~~~~~~~~~~~~~~~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l 379 (499)
....+ .-..+... + ..+... ......+...+...|++.+|..++..+... |.... ...+...
T Consensus 107 ~~~~d~~~~~~~i~~-l--~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 107 SKSLDLNTRISVIET-I--RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HCTTHHHHHHHHHHC-C--SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH-H--HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22222 22222221 1 111111 112345667777888888888888887632 22211 2356666
Q ss_pred HHHHHhcCChhhHHHHHHHHh----cCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHH--
Q 010853 380 IDGLCESNQLDEAKRFWDDIV----WPSNIHD--NYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVI-- 450 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~----~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~-- 450 (499)
++.|...+++.+|..++.++. .....|+ ...+...+..+...+++.+|.+.|.++.+. ...-+...+..++
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 778888888888888888763 1212222 124566777777888888888877777652 1122233232222
Q ss_pred --HHHHhcCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcc
Q 010853 451 --DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 490 (499)
Q Consensus 451 --~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 490 (499)
.+..-.+....-..++........-++...+..|+++|..
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 1222233333333444444443333455666777766643
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.05 E-value=1.6 Score=31.60 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHh
Q 010853 405 IHDNYVYAAMIKGLCRSGKI---HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 479 (499)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 479 (499)
.|+..+--.+..++.+..+. .+++.+++++...+..-....+-.+.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 34444444455555555433 35666666666554221233444555566667777777777666665 455543
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.85 E-value=7.8 Score=38.04 Aligned_cols=126 Identities=14% Similarity=0.005 Sum_probs=76.1
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHHhCCCCCCcccH--HHHHHHHhcCC-CHHHHHHHHHHHHhC------CCCC-c---
Q 010853 165 NSIVHGLCKHGG-CMRAYQLLEEGIQFGYLPSEHTY--KVLVEGLCGES-DLEKARKVLQFMLSK------KDVD-R--- 230 (499)
Q Consensus 165 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~--- 230 (499)
..++..+...++ .+.|..+++++.+.. |....+ ..++..+...+ +--+|.+++.+..+. ...+ +
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555666 477888888887743 433332 23333333333 223455555554321 1111 1
Q ss_pred -------hhhHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 231 -------TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 231 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
......-...+...|+++-|+.+.++.....+ -+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222234455668888989988888877643 367788999999999999999998888774
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.42 E-value=1.7 Score=29.51 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 389 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
.=+.++-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555544
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.02 E-value=1 Score=44.09 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=42.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM 469 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 469 (499)
+.+...|+++-|+++.++....- +-+-.+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45667788899999888888763 225678889999999999999988888776
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.99 E-value=0.69 Score=41.62 Aligned_cols=65 Identities=5% Similarity=0.016 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
...|++.+|+..++.+.... +-+...+..++.++.+.|+..+|...|.++-..+.+.-++.|...
T Consensus 182 l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 45555666655555555432 234555555666666666666666555555555544445555543
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.65 E-value=5.5 Score=41.75 Aligned_cols=191 Identities=13% Similarity=0.109 Sum_probs=118.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCC--------------
Q 010853 271 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP-------------- 336 (499)
Q Consensus 271 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 336 (499)
.++..+...+..+.+.++..-. +.+....-.+..++...|++++|.+.|.+.. .++..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSCSSHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhhhhhcccccc
Confidence 4555566677777766655432 3344444556778889999999999997742 22211
Q ss_pred ---------chhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHhcCC
Q 010853 337 ---------GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEAKRFWDDIVWPS 403 (499)
Q Consensus 337 ---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 403 (499)
-..-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+....
T Consensus 889 ~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 889 AEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 1123677788888889999988888776654222222 257888999999999999999998876554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH------------HHHHHHHHH-Hc-CCCCChhhHHHHHHHHHhcCChHHHH-HHHHH
Q 010853 404 NIHDNYVYAAMIKGLCRSGKIHE------------AVHFLYELV-DS-GVTPNIVCYNVVIDGACKLSMKREAY-QILRE 468 (499)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~------------a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~ 468 (499)
.+ ......|+...+..|..+. ..+++..-. .. .+...+.-|..|-.-+...|++..|- -+|+.
T Consensus 969 ~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 43 3456777777776665443 333433211 11 11212233555555566777776554 44565
Q ss_pred HHH
Q 010853 469 MRK 471 (499)
Q Consensus 469 m~~ 471 (499)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.06 E-value=3.5 Score=30.29 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 406 HDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 406 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
|+..+--.+..++.+..+ ..+++.+++++...+..-.....-.|.-++.+.|++++|.+..+.+.+ +.|+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 444444445555555543 234556666665543222233444445566666666666666666666 45543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.47 E-value=3 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444444555555555555555555555555554443
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.20 E-value=3.7 Score=29.71 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=23.0
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 391 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 391 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
+..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-.+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555554443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.84 E-value=4.3 Score=29.43 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=36.2
Q ss_pred CcCHHhHHHHHHHHHhcCCh---hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 370 VADSTTYAIVIDGLCESNQL---DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.|+..+--.+..++.+..+. .++..+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44555555555555555433 345556665554432212333444555666666666666666666654
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.61 E-value=8.4 Score=40.41 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcC----C---------------
Q 010853 343 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----S--------------- 403 (499)
Q Consensus 343 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--------------- 403 (499)
.++..+...+..+.+.++.... +.+...--.+..+|...|++++|.++|++.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3455566666666666554433 223333345566777788888888888765210 0
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 404 ---NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI----VCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 404 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
...-..-|..++..+-+.|.++.+.++-+..++....-+. ..|..+.+++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0001123667777788888888888877776654222121 2577778888888888888888877765433
Q ss_pred CHhHHHHHHHHhcccC
Q 010853 477 DAVTWRILDKLHGNRG 492 (499)
Q Consensus 477 ~~~~~~~l~~~~~~~g 492 (499)
-....+.|+...+..|
T Consensus 970 r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3456666665555444
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.40 E-value=9.6 Score=32.71 Aligned_cols=25 Identities=16% Similarity=-0.023 Sum_probs=13.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHH
Q 010853 160 SLVSYNSIVHGLCKHGGCMRAYQLL 184 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~~~~a~~~~ 184 (499)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4444555555555555555555544
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.28 E-value=5.7 Score=28.74 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHh
Q 010853 356 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 400 (499)
Q Consensus 356 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 400 (499)
+..+-++.+....+.|++.+....+++|.+.+|+..|.++++-++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.14 E-value=14 Score=31.96 Aligned_cols=22 Identities=5% Similarity=0.007 Sum_probs=11.7
Q ss_pred hHHHHHHHHhccCCHHHHHHHH
Q 010853 53 TYSVLVRGVLRTRDVERANVLM 74 (499)
Q Consensus 53 ~~~~l~~~~~~~~~~~~a~~~~ 74 (499)
.|.++..-|.+++++++|.+++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL 58 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDIL 58 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHH
Confidence 4444555555555555555543
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.65 E-value=4.2 Score=37.06 Aligned_cols=101 Identities=8% Similarity=-0.163 Sum_probs=58.8
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhcc---CCCCCCchhh
Q 010853 52 LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMP---QGKSVNEEFA 128 (499)
Q Consensus 52 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~ 128 (499)
.+...+...+.+.|+++.|...+.++..... +...-...+-.+++.+...+++..+...++++. ..+..++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAI---STGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHT---CCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3566677777777777777777766655433 233445666777777777777777776666643 2222222211
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 129 --CGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 129 --~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
...-...+...+++..|...|-+....
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 111122234567777777777665543
No 258
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=86.48 E-value=5.6 Score=30.19 Aligned_cols=64 Identities=8% Similarity=0.027 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHhccC
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-------AVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 332 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 332 (499)
+-.-+..+...|.++.|+-+.+.+.......|+ ..++..+.+++...+++..|...|++.+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 334455556666666666555543321100122 1244555666777777777777776655433
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.28 E-value=8.2 Score=28.40 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=39.5
Q ss_pred CcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 010853 370 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 437 (499)
Q Consensus 370 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 437 (499)
.|+..+--.+..++.+..+ ..++..+++++...+..-.....-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555556666666554 3356666666655433222333344555677777777777777777765
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.22 E-value=16 Score=31.65 Aligned_cols=170 Identities=17% Similarity=0.146 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH---HHHhccCCCCCchhhHHH
Q 010853 267 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLL---YQVMPQRGYSPGIVTYNA 343 (499)
Q Consensus 267 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~ 343 (499)
.+|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++. -+.....++++|......
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r 99 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK 99 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345566666666666666666655432 2344455555444332 133445566677666666
Q ss_pred HHHHHHhcCCHH-HHHHHHHHHhh----CC--CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHH
Q 010853 344 VLRGLFRLRRVE-EAKEVFNCMLG----IG--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 416 (499)
Q Consensus 344 ll~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 416 (499)
++..+.....-+ .=..+.+.+.+ .| ..-|+.....+...|.+.+++.+|+..|= .+-.++...+..++.
T Consensus 100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Confidence 666655443211 11222222221 11 12245555666677777777777766662 122222244544443
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 417 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 417 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
-+...+...+ ++... ...+--|...++...|..+++...+
T Consensus 176 ew~~~~~~~e--------------~dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHT--------------APLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGG--------------HHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcc--------------HHHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333322111 11112 2233346667888888887777653
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.36 E-value=13 Score=33.82 Aligned_cols=97 Identities=11% Similarity=-0.056 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhC---CCCCCccc--H
Q 010853 127 FACGHMIDSLCRSGRNHGASRVVYVMRKRG--LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF---GYLPSEHT--Y 199 (499)
Q Consensus 127 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 199 (499)
.+...+...|.+.|+++.|.+.|.++...- ...-...+-..++.+...+++..+...+.+.... +-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678888888888888888888887652 2223456677778888888888888887776432 21121110 0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 200 KVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 200 ~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
..-...+...+++..|-..|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 111122344566666666665544
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.83 E-value=44 Score=32.06 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=28.5
Q ss_pred HHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010853 380 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 435 (499)
Q Consensus 380 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 435 (499)
+....+.|+++.|...|+.+..... ......-.+.+++...|+.++|..+|+++.
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3333455666666666666543211 122233344555556666666666666654
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.91 E-value=20 Score=28.21 Aligned_cols=53 Identities=15% Similarity=0.061 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 010853 389 LDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP 441 (499)
Q Consensus 389 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 441 (499)
...+..+|..|...++.. -...|......+...|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445666666665444422 23345555556666666666666666666655554
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.60 E-value=31 Score=29.58 Aligned_cols=177 Identities=13% Similarity=0.059 Sum_probs=93.9
Q ss_pred HhcCChHHHHHHHHHHHhCCC---CCC--hhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHH
Q 010853 27 AITGEMDVAYKVFDEMRHCGV---LPN--SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSL 101 (499)
Q Consensus 27 ~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (499)
...|++=+|.+.++.+..+-+ +.+ ......-...+.+.|+...|..+..-+++...+. +..++......++..+
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~-~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA-EVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCCSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Confidence 556666666666665543311 011 1112222334556677777766655555555444 6777777777777776
Q ss_pred HcCCCHh-----HHHHHHHhccCCC--CCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 010853 102 CREGYVN-----EVFRIAEDMPQGK--SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 174 (499)
Q Consensus 102 ~~~~~~~-----~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 174 (499)
......+ -..+...+..+.+ ...++..+..+...|.+.|++.+|...|-.-. .-+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHh
Confidence 5533211 1222222322221 22456677788888888888888887664111 11345555555444443
Q ss_pred ---CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 175 ---GGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 175 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
|...++--.+ ...+-.|...++...|..+++...
T Consensus 179 ~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3332221111 112223556788888888887765
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.32 E-value=6.8 Score=26.58 Aligned_cols=47 Identities=15% Similarity=0.053 Sum_probs=19.5
Q ss_pred HHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHH
Q 010853 136 LCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGI 188 (499)
Q Consensus 136 ~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 188 (499)
+...|++++|..+.+.+. .||...|..|... +.|-.+++...+..+-
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 344455555544443322 3444444433222 3444444444443433
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.53 E-value=21 Score=28.13 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=34.6
Q ss_pred ChhhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 010853 141 RNHGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 194 (499)
Q Consensus 141 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 194 (499)
....+.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35567777777776655433 3345666666667777777777777766665555
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.84 E-value=15 Score=24.98 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=20.6
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 010853 241 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG 295 (499)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 295 (499)
+...|++++|..+.+.. +.||...|..+.. .+.|..+++...+..+..+
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 33444444444443222 1344444433322 3444445555444444443
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.60 E-value=14 Score=25.06 Aligned_cols=51 Identities=12% Similarity=-0.039 Sum_probs=22.0
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010853 240 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 296 (499)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 296 (499)
.+...|++++|..+.+.. +.||...|..+.. .+.|..+++...+..+..++
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 334444444444433221 2344444433322 34455555555554444433
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.48 E-value=6.5 Score=32.64 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 100 SLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+.+.|++++|++....-.+..+ .|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566677777666666555554 45556666777777777777777777766665
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.66 E-value=13 Score=30.93 Aligned_cols=117 Identities=14% Similarity=0.133 Sum_probs=72.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcC
Q 010853 25 ALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCRE 104 (499)
Q Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (499)
-+.+.|++++|++....-.+.. +-|...-..+++.++-.|++++|...+..+.+ +. +...+....|..+|++-..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-l~--p~~~~~a~~yr~lI~aE~~- 80 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK-LF--PEYLPGASQLRHLVKAAQA- 80 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hC--chhhHHHHHHHHHHHHHHH-
Confidence 4578899999999888888764 45777788899999999999999887754433 22 2445555566666654211
Q ss_pred CCHhHHHHHHHhccCCCCCCc-----hhhHHHHHHHH--HhcCChhhHHHHHHHHHhc
Q 010853 105 GYVNEVFRIAEDMPQGKSVNE-----EFACGHMIDSL--CRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 105 ~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~ 155 (499)
=.++...+..|. ..-...++.+. ...|+.++|.++-....+.
T Consensus 81 ---------R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 81 ---------RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---------HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 112222221111 11223344443 3357888888777776554
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.24 E-value=48 Score=29.59 Aligned_cols=218 Identities=11% Similarity=0.014 Sum_probs=103.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCCHHHHHH--
Q 010853 236 IYLRALCLIKNPTELLNVLVFMLQTQCQPD-----VITLNTVINGFCKMGRIEEALKVLNDMVAGKF-CAPDAVTFTT-- 307 (499)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~-- 307 (499)
.++..|...|++.+|..++..+.+.-...| ...+..-+..|...+++.++...+........ +.+++..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 344555556666666555555544211111 22344556667777787777777766543211 0122222211
Q ss_pred --HHHHHH-ccCCHHHHHHHHHHHhccCCCC--C---chhhHHHHHHHHHhcCCHHHHHHHHH-HH-hhCCCCcCHHhHH
Q 010853 308 --IIFGLL-NVGRIQEALNLLYQVMPQRGYS--P---GIVTYNAVLRGLFRLRRVEEAKEVFN-CM-LGIGVVADSTTYA 377 (499)
Q Consensus 308 --l~~~~~-~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~~ 377 (499)
-...+. ..+++..|...|.+......-. | +...|.. +.+.. .++..+...++. .. ... ..|....+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl-~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIM-LGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHH-TTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHH-cCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 122345 6778888877777654322111 1 1112222 22222 233222222221 11 111 245555566
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhhHHHHHHH
Q 010853 378 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-----VTPNIVCYNVVIDG 452 (499)
Q Consensus 378 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~ 452 (499)
.++.+| ..+++.....+++.... .+..|......+ ..+++.++.++ .+-+..++..+...
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-------------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~ 325 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-------------GTLYDTMLEQNLCRIIEPYSRVQVAHVAES 325 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-------------HHHHHHHHHHHHHHHHTTCSEEEHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-------------HHHHHHHHHHHHHHHhHhhceeeHHHHHHH
Confidence 666654 45677777777766532 234454422111 11122222111 12245667777665
Q ss_pred HHhcCChHHHHHHHHHHHHCC
Q 010853 453 ACKLSMKREAYQILREMRKNG 473 (499)
Q Consensus 453 ~~~~g~~~~a~~~~~~m~~~g 473 (499)
+.- ..++++..+-+|...|
T Consensus 326 l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 326 IQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HTC--CHHHHHHHHHHHHHTT
T ss_pred HCc--CHHHHHHHHHHHHHCC
Confidence 543 5778888888888654
No 272
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.97 E-value=38 Score=31.38 Aligned_cols=65 Identities=6% Similarity=0.022 Sum_probs=35.6
Q ss_pred HHhHHHHHHHHHcCCCHhHHHHHHHhccCCCC-CCchh--hH-HHHHHHHHhcCChhhHHHHHHHHHhc
Q 010853 91 NAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEEF--AC-GHMIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~-~~l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
...+|.+++.|...+.++.|..+.....--.. .++.. .| --+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45666677777777777777777776542100 11111 11 11234455566777777777666554
No 273
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=73.06 E-value=31 Score=26.84 Aligned_cols=115 Identities=9% Similarity=-0.026 Sum_probs=51.3
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHHccC
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKHG 175 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~~~~ 175 (499)
+...+..|+.+....++..-...--..+..-++. +...++.|+.+ +++.+.+.|..++... -.+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 3344566777777777664431111122222232 33344555544 4444455565554322 112334445566
Q ss_pred ChhHHHHHHHHHHhCCCCCCc---ccHHHHHHHHhcCCCHHHHHHHHHH
Q 010853 176 GCMRAYQLLEEGIQFGYLPSE---HTYKVLVEGLCGESDLEKARKVLQF 221 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 221 (499)
+.+-+..+++. .+..++. .-. ..+...+..|+.+.+..+++.
T Consensus 84 ~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLED 128 (201)
T ss_dssp CHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHc
Confidence 66655555533 2222211 111 123334456666655555543
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.33 E-value=45 Score=27.61 Aligned_cols=12 Identities=8% Similarity=-0.114 Sum_probs=4.7
Q ss_pred HcCCCHhHHHHH
Q 010853 102 CREGYVNEVFRI 113 (499)
Q Consensus 102 ~~~~~~~~a~~~ 113 (499)
+..|+.+-+..+
T Consensus 47 ~~~g~~~~v~~L 58 (285)
T 1wdy_A 47 VQMSREDIVELL 58 (285)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 334444433333
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.96 E-value=67 Score=28.67 Aligned_cols=92 Identities=8% Similarity=-0.141 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHccCChhHHHHHHHHHHhC--CCCCCcccHHH--
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPS-----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF--GYLPSEHTYKV-- 201 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 201 (499)
.++..|...|++.+|.+++..+.+.=-+.| ..+|..-+..|...+++.++...+...... .+.+++.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466667777777777777766655310111 223445556666777777777777655432 11122221111
Q ss_pred --HHHHHh-cCCCHHHHHHHHHHH
Q 010853 202 --LVEGLC-GESDLEKARKVLQFM 222 (499)
Q Consensus 202 --l~~~~~-~~~~~~~a~~~~~~~ 222 (499)
-...+. ..++|..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 112234 567777776666554
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.04 E-value=41 Score=25.12 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCC
Q 010853 143 HGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS 195 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 195 (499)
+.+.++|..|..+|+--. ..-|......+...|++.+|.++|+.-++.+-.|-
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 457788888877765433 33566667777778888888888887777666553
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.64 E-value=37 Score=31.46 Aligned_cols=66 Identities=8% Similarity=0.079 Sum_probs=38.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCH--HHH-HHHHHHHHccCCHHHHHHHHHHHhcc
Q 010853 266 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA--VTF-TTIIFGLLNVGRIQEALNLLYQVMPQ 331 (499)
Q Consensus 266 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 331 (499)
...+|.+++.|...+.++.|..+..+..--....++. ..| -.+...+.-.+++.+|.+.+..++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3456777777777888888888877764211001111 112 12344556677888887777776543
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.60 E-value=44 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 427 AVHFLYELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 6666766666654433 234555566666677777777777777666666643
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.96 E-value=87 Score=28.20 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=10.3
Q ss_pred HHHHHHcCCCHhHHHHHHHh
Q 010853 97 LVDSLCREGYVNEVFRIAED 116 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~ 116 (499)
.+...+..|+.+-+..+++.
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhC
Confidence 34444455666555555544
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.83 E-value=40 Score=24.31 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--IHEAVHFLYELVDSGVT 440 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 440 (499)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.+. .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 356788888889999999999999852211 122344445555555432 35677778777766544
No 281
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=61.19 E-value=79 Score=27.16 Aligned_cols=105 Identities=11% Similarity=0.048 Sum_probs=53.3
Q ss_pred HHHHHHHhhCCCCcCHH---hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010853 358 KEVFNCMLGIGVVADST---TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH---DNYVYAAMIKGLCRSGKIHEAVHFL 431 (499)
Q Consensus 358 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 431 (499)
..+.+.+.+.|..++.. -.+. +...+..|..+.+..+++.- +..+ |..-.+.|. ..++.|+.+ +.
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~-L~~a~~~~~~~~v~~Ll~~~---~~~vn~~d~~G~TpL~-~A~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTP-LILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALL-LAVELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCH-HHHHHHTTCHHHHHHHHTST---TCCTTCBCTTSCBHHH-HHHHTTCHH----HH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCH-HHHHHHhhhhHHHHHHHHhc---CCcccCcCCCCCCHHH-HHHHcCCHH----HH
Confidence 34445556666554422 2223 33455677777766655421 2111 222223333 334556654 34
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 010853 432 YELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 478 (499)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 478 (499)
+.+++.|..+|..+ .+...++.|+.+ +++.+++.|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 45567787777665 233344566654 55566778877764
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.08 E-value=31 Score=27.72 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=24.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 415 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY--NVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 415 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
+...+..|+.+-+ +.+.+.|..++.... ...+....+.|+.+-+..+++...+
T Consensus 181 L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVI----SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHH----HHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 3444556665533 334445555543211 1234444556776655555544433
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.01 E-value=56 Score=24.75 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 010853 427 AVHFLYELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNP 476 (499)
Q Consensus 427 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p 476 (499)
+.++|..|..+|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444443322 1233344444444555555555555554444444
No 284
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=58.57 E-value=22 Score=26.98 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCcCHHhHHHHHHHHHhcCChh
Q 010853 319 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVADSTTYAIVIDGLCESNQLD 390 (499)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 390 (499)
+.+++.+.+.++..|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 445555555566667666543 344556666666667777777777765 54556666555666666666543
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.80 E-value=83 Score=26.31 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=6.0
Q ss_pred HHHHHhhCCCCcCH
Q 010853 360 VFNCMLGIGVVADS 373 (499)
Q Consensus 360 ~~~~~~~~~~~~~~ 373 (499)
+.+.+.+.|..++.
T Consensus 210 ~v~~Ll~~gad~~~ 223 (285)
T 3kea_A 210 MLQALFKYDINIYS 223 (285)
T ss_dssp HHHHHTTSCBCSTT
T ss_pred HHHHHHHcCCCCCC
Confidence 33334444544443
No 286
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.07 E-value=15 Score=30.35 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=26.5
Q ss_pred HHHHHcCCCHhHHHHHHHhccCCCCCCc-------hhhHHHHHHHHH--hcCChhhHHHHHHHH
Q 010853 98 VDSLCREGYVNEVFRIAEDMPQGKSVNE-------EFACGHMIDSLC--RSGRNHGASRVVYVM 152 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~--~~~~~~~A~~~~~~~ 152 (499)
+...++.|+.+....+++.+.+.+...+ ..-.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3344556777766666664333332222 112233333332 456666666666554
No 287
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=56.00 E-value=1.5e+02 Score=28.55 Aligned_cols=115 Identities=16% Similarity=0.033 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhCCCCCchh---hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 010853 211 DLEKARKVLQFMLSKKDVDRTR---ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 287 (499)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 287 (499)
+.+.|...+..........+.. ....+...+...+...++...+....... .+.......+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 6677777777765433222221 22333333344443445555555544332 233334444445556788888888
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHh
Q 010853 288 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 329 (499)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 329 (499)
.|..|.... .......--+..++...|+.++|..+|..+.
T Consensus 307 ~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 307 WLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888776532 1234434445566677788888888777654
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.56 E-value=85 Score=32.12 Aligned_cols=108 Identities=11% Similarity=-0.065 Sum_probs=62.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------------
Q 010853 379 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT------------------ 440 (499)
Q Consensus 379 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 440 (499)
++..|...|.++-+.++..-+ ..+...--.+.++|...|++++|.+.|+++- .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 444555566655554433222 1122222335556666677777777766532 1111
Q ss_pred --C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHhcccC
Q 010853 441 --P---NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA----VTWRILDKLHGNRG 492 (499)
Q Consensus 441 --~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g 492 (499)
+ ...-|..++..+.+.+.++-+.++.+.+.+.--..|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 1125788899999999999999999998864222233 25666667666554
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.85 E-value=67 Score=24.34 Aligned_cols=54 Identities=20% Similarity=0.187 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCc
Q 010853 143 HGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 196 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 196 (499)
+.+.++|..|..+|+--. ..-|......+-..|++.+|.++|..-++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 457778888887766533 335666677777788888888888887777666643
No 290
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=54.19 E-value=47 Score=22.37 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHHhHHHH
Q 010853 34 VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 97 (499)
Q Consensus 34 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (499)
.|.++.+++...|+.|+..+...++..|...+-- +..+..+.+.--....+..|+...++.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ld--a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQN--EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 4778888888889999988899999888887752 4443333332222334677776655443
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.82 E-value=37 Score=25.40 Aligned_cols=65 Identities=20% Similarity=0.315 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--IHEAVHFLYELVDSGVT 440 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~ 440 (499)
....++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456788889999999999999999853211 123344455555555332 45677788888776654
No 292
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.64 E-value=52 Score=22.40 Aligned_cols=78 Identities=21% Similarity=0.073 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010853 353 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 432 (499)
Q Consensus 353 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 432 (499)
..++|..+-+.+...+. ...+-.+=+..+...|++++|..+.+.. ..||...|-.|- -.+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45555555555555432 1111111123345556666665554433 245555554432 234455555555554
Q ss_pred HHHHcC
Q 010853 433 ELVDSG 438 (499)
Q Consensus 433 ~~~~~~ 438 (499)
++-..|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 444443
No 293
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.18 E-value=38 Score=25.01 Aligned_cols=60 Identities=15% Similarity=0.085 Sum_probs=33.4
Q ss_pred hccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
++..|++++..- ..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 445555555432 234444445555566777777776665555566655556666655543
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.17 E-value=88 Score=24.88 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.5
Q ss_pred HhcCChHHHHHHH
Q 010853 27 AITGEMDVAYKVF 39 (499)
Q Consensus 27 ~~~~~~~~a~~~~ 39 (499)
++.|+.+.+..++
T Consensus 17 ~~~g~~~~~~~Ll 29 (240)
T 3eu9_A 17 TQYGIYERCRELV 29 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCChHHHHHHH
Confidence 5566655443333
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.90 E-value=82 Score=25.30 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCC
Q 010853 143 HGASRVVYVMRKRGLTPS-LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLP 194 (499)
Q Consensus 143 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 194 (499)
+.+.++|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 577788888887766533 3456667777777888888888888877766555
No 296
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=50.54 E-value=1e+02 Score=25.22 Aligned_cols=135 Identities=7% Similarity=-0.014 Sum_probs=71.2
Q ss_pred CCccCHHhHHHHHHHHHcCC-CHhHHHHHHHhccCCCC-CCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChh
Q 010853 86 DLSVNNAAFANLVDSLCREG-YVNEVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLV 162 (499)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g-~~p~~~ 162 (499)
+-..+..-+..++..+...+ ....+..+|..+-..+- .-+..-|..++..+......++...+|+.+...| -..+..
T Consensus 106 ~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~ 185 (256)
T 2jul_A 106 TGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKE 185 (256)
T ss_dssp TSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHH
T ss_pred CCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHH
Confidence 34455566666666554333 33456777887754431 1223333344444433334455666666554332 122333
Q ss_pred hHHHHHHHHHc-cC-----------ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHHHHHHHH
Q 010853 163 SYNSIVHGLCK-HG-----------GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 222 (499)
Q Consensus 163 ~~~~l~~~~~~-~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 222 (499)
-+..++..+.. .| ..+.+..+|..+-..+ ....++.-++..+.+...+-.+...|+.+
T Consensus 186 Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 186 EMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 34444433321 13 2344566666653322 23467888888888888888888887764
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.96 E-value=91 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccC
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQ 119 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~ 119 (499)
.++.-|...|+.++|...++++..
T Consensus 8 ~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 8 PIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC
Confidence 467777777888888888887654
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.59 E-value=47 Score=24.67 Aligned_cols=61 Identities=11% Similarity=0.104 Sum_probs=32.4
Q ss_pred HhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 328 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
.++..|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344555555443 2234444555555666777777776655455555555555666555543
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.27 E-value=1e+02 Score=25.09 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=10.6
Q ss_pred hHHHHHHHHhccCChHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVL 254 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~ 254 (499)
.....+..+.+.|+.++|.++|
T Consensus 93 ~~r~~v~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 93 HLKSGTENMIKLGLPEQALDLF 114 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCChhHHHHHH
Confidence 3334444445555555555544
No 300
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.92 E-value=45 Score=24.63 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=33.7
Q ss_pred HhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCCh
Q 010853 328 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 389 (499)
Q Consensus 328 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (499)
.++..|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445566655432 23344444444 556777777777666555666655555666655543
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.76 E-value=61 Score=23.87 Aligned_cols=36 Identities=8% Similarity=-0.324 Sum_probs=15.8
Q ss_pred ccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 173 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
..+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 334444555555555544433333343333333333
No 302
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.60 E-value=1e+02 Score=24.08 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=7.5
Q ss_pred ChhhHHHHHHHHHccCC
Q 010853 160 SLVSYNSIVHGLCKHGG 176 (499)
Q Consensus 160 ~~~~~~~l~~~~~~~~~ 176 (499)
+...-...+.++...++
T Consensus 63 ~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGD 79 (211)
T ss_dssp CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCC
Confidence 44444444444444443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=46.08 E-value=1.2e+02 Score=24.67 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=16.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHh
Q 010853 57 LVRGVLRTRDVERANVLMFKLWERM 81 (499)
Q Consensus 57 l~~~~~~~~~~~~a~~~~~~~~~~~ 81 (499)
-++.+....++++|..++++.-...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l 48 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQL 48 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4566777778888877665554433
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=46.02 E-value=90 Score=23.26 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC--hhhHHHHHHHHhcCCCC
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ--LDEAKRFWDDIVWPSNI 405 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 405 (499)
....++.-|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46678899999999999999999985321 1122233444445544322 34566667666655544
No 305
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=45.87 E-value=57 Score=20.91 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=28.7
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHhcccC
Q 010853 434 LVDSGVTPNIVCYNVVIDGACKLS-MKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 492 (499)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 492 (499)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 445565554433 23334443332 34456666666665554445555555555544444
No 306
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=44.50 E-value=60 Score=24.11 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=18.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 010853 167 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 208 (499)
Q Consensus 167 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 208 (499)
++..+...+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 333333444445555555555444433333333333333333
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.26 E-value=1.2e+02 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=12.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCC
Q 010853 134 DSLCRSGRNHGASRVVYVMRKRGLTP 159 (499)
Q Consensus 134 ~~~~~~~~~~~A~~~~~~~~~~g~~p 159 (499)
...++.|+.+....+++.+.+.|..+
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33444555555555555544444433
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.69 E-value=1.2e+02 Score=23.23 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=25.1
Q ss_pred HHhcCChhhHHHHHHHH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 010853 383 LCESNQLDEAKRFWDDI-VWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI 443 (499)
Q Consensus 383 ~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 443 (499)
.+..|+.+-+..+++.- ...+ ..+..-.+.+..+.........-.++++.+.+.|..++.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 34456665555555443 1111 112222333333332222233334555666666655543
No 309
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.49 E-value=58 Score=23.62 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=7.3
Q ss_pred ChhHHHHHHHHHHhCC
Q 010853 176 GCMRAYQLLEEGIQFG 191 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~ 191 (499)
..-.|.++++.+.+.+
T Consensus 33 ~~~sa~ei~~~l~~~~ 48 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAG 48 (136)
T ss_dssp CSBCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHhhC
Confidence 3444444444444443
No 310
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=39.93 E-value=1.1e+02 Score=22.53 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=10.4
Q ss_pred HHHHHcCCCHhHHHHHHHh
Q 010853 98 VDSLCREGYVNEVFRIAED 116 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~ 116 (499)
+...++.|+.+....+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344555666666665543
No 311
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.80 E-value=1e+02 Score=22.12 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC--hhhHHHHHHHHhcCCCC
Q 010853 340 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ--LDEAKRFWDDIVWPSNI 405 (499)
Q Consensus 340 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 405 (499)
....++.-|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+...+.-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45678889999999999999999986321 1122233444445544432 35566677777655554
No 312
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.70 E-value=64 Score=23.94 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcC
Q 010853 176 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE 209 (499)
Q Consensus 176 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (499)
..-.|.++++.+.+.+...+..|....+..+...
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 65 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDA 65 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHC
Confidence 3444555555555444333333333333333333
No 313
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=39.38 E-value=86 Score=21.14 Aligned_cols=58 Identities=9% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH-----HHCCCCCCHhHHHHHH
Q 010853 426 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM-----RKNGLNPDAVTWRILD 485 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m-----~~~g~~p~~~~~~~l~ 485 (499)
.|.++.+++...|+.|+..+...++..|...+- + +.++.++. ...|..|+..+.+.+-
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 355666777777888888777777777776554 1 33332222 2457777777777665
No 314
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.29 E-value=1.6e+02 Score=24.12 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=54.9
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh--HHHHHHHHHcc
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS--YNSIVHGLCKH 174 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~--~~~l~~~~~~~ 174 (499)
.+...++.|+++....+++.-.......+..-++ .+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 4555667788877777776543332222222222 344455666654 4445555665554321 12334444556
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccH--HHHHHHHhcCCCHHHHHHHH
Q 010853 175 GGCMRAYQLLEEGIQFGYLPSEHTY--KVLVEGLCGESDLEKARKVL 219 (499)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~ 219 (499)
|+.+-+. .+.+.|..++.... ...+...+..|+.+-+..++
T Consensus 83 ~~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 125 (285)
T 1wdy_A 83 GSVKLLK----LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125 (285)
T ss_dssp TCHHHHH----HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHH----HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHH
Confidence 6654443 33445554433211 12333445566665444444
No 315
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=38.98 E-value=2e+02 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.041 Sum_probs=19.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
....++.-|...|+.++|.+.++++.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 35667777778888888888887775
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.29 E-value=74 Score=24.02 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=20.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhc--CCCCCHhhHHHHHHHHHhcC
Q 010853 236 IYLRALCLIKNPTELLNVLVFMLQT--QCQPDVITLNTVINGFCKMG 280 (499)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 280 (499)
.++..+...+..-.|.++++.+.+. ++..+..|.-.-++.+...|
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444455555555555544 44444444333444444444
No 317
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.24 E-value=72 Score=23.11 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=30.1
Q ss_pred hccCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 329 MPQRGYSPGIVTYNAVLRGLFRLR-RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 329 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
++..|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 334455544432 23444444444 455666666666665545555555555555555544
No 318
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=38.15 E-value=69 Score=25.44 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=15.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhc
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKR 155 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~ 155 (499)
.+..|.+.|.+++|.++|++....
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC
Confidence 344566777777777777766654
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=38.07 E-value=54 Score=24.19 Aligned_cols=15 Identities=13% Similarity=0.000 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHhCC
Q 010853 177 CMRAYQLLEEGIQFG 191 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~ 191 (499)
.-.|.++++.+.+.+
T Consensus 33 h~ta~ei~~~l~~~~ 47 (145)
T 3eyy_A 33 HATPDDILGEVRKTA 47 (145)
T ss_dssp SBCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhhC
Confidence 344444554444443
No 320
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.55 E-value=1.9e+02 Score=24.64 Aligned_cols=75 Identities=20% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM--KREAYQILREMRKNGLNPDAVTWRILD 485 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l~ 485 (499)
....++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+.+..++..+.+.|+-+.......+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3567888898999999999999888421111 11223333334444322 345667777776666555444433333
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.24 E-value=3.6e+02 Score=27.62 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=65.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC-----------------
Q 010853 344 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH----------------- 406 (499)
Q Consensus 344 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 406 (499)
++..|...|..+-+.++...+ +.++..--.+..+|...|++++|..+|+++- .++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 555666667766655433222 2344433456677888888888888887663 11110
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcC
Q 010853 407 ------DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI----VCYNVVIDGACKLS 457 (499)
Q Consensus 407 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 457 (499)
...-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1124678888888889999998888888864222222 24556666555443
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=37.19 E-value=1.5e+02 Score=23.42 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=20.9
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHhccCCHHHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNS---LTYSVLVRGVLRTRDVERA 70 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 70 (499)
.+.....+..|+.+- ++.+.+.|..++. .-++ .+...+..|+.+-+
T Consensus 12 ~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v 60 (237)
T 3b7b_A 12 RSPLHAAAEAGHVDI----CHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAV 60 (237)
T ss_dssp CCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH
T ss_pred CCHHHHHHHcCcHHH----HHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHH
Confidence 344444566777653 4444445544432 1122 23333445665544
No 323
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.84 E-value=64 Score=26.67 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=29.6
Q ss_pred HHHHHHcCCCHhHHHHHHHhccCCCCC-------CchhhHHHHHHHHH--hcCChhhHHHHHHHH
Q 010853 97 LVDSLCREGYVNEVFRIAEDMPQGKSV-------NEEFACGHMIDSLC--RSGRNHGASRVVYVM 152 (499)
Q Consensus 97 l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~ 152 (499)
.+...++.|+.+.+..+++...+.+.. .+..-++.|..++. +.|+.+-+..+++.-
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 344455677777777776654322211 12333444554443 347777666666654
No 324
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=36.61 E-value=2.2e+02 Score=24.98 Aligned_cols=59 Identities=10% Similarity=-0.034 Sum_probs=32.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHh
Q 010853 233 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR--IEEALKVLNDMV 293 (499)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 293 (499)
....++.-|...++.+++...++++..... .......++..-...++ -+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 456677777778888888888777643222 12222333433333332 344555555555
No 325
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.95 E-value=1.5e+02 Score=22.76 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHhcCChhhHHHHHHHHhcCCCCCC-----------------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010853 382 GLCESNQLDEAKRFWDDIVWPSNIHD-----------------NYVYAAMIKGLCRSGKIHEAVHFLYE 433 (499)
Q Consensus 382 ~~~~~g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~li~~~~~~g~~~~a~~~~~~ 433 (499)
+|-+..++..|...++.+....+..| ...|+.+...+...|+.++|+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
No 326
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=35.23 E-value=1.7e+02 Score=23.44 Aligned_cols=52 Identities=12% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 010853 426 EAVHFLYELVDSGVTPN-IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 477 (499)
Q Consensus 426 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~ 477 (499)
++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45566666666554432 23455555556666666666666666666555553
No 327
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.41 E-value=2.3e+02 Score=24.57 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=12.3
Q ss_pred HHHHHHHHccCChhHHHHHHHHH
Q 010853 165 NSIVHGLCKHGGCMRAYQLLEEG 187 (499)
Q Consensus 165 ~~l~~~~~~~~~~~~a~~~~~~~ 187 (499)
..++.-|...|+.++|.+.++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34455555555555555555554
No 328
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.24 E-value=1.7e+02 Score=23.00 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCC
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (499)
+-.+.+.|+.++.+|.+.| .|....-..++-+.-.-|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 4567888888888888887 5554444445555544443
No 329
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=33.95 E-value=43 Score=20.13 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHH-Hhc
Q 010853 425 HEAVHFLYELVDSGVTPNIVCYNVVIDGA-CKL 456 (499)
Q Consensus 425 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 456 (499)
++|.+.|.+|++..-.++..+|...++.+ ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 56777777777543333567788887777 543
No 330
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.56 E-value=1.7e+02 Score=22.77 Aligned_cols=17 Identities=18% Similarity=-0.072 Sum_probs=7.7
Q ss_pred CHHhHHHHHHHHHhcCC
Q 010853 372 DSTTYAIVIDGLCESNQ 388 (499)
Q Consensus 372 ~~~~~~~l~~~~~~~g~ 388 (499)
+..+-...+.++...|+
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 44444444444444444
No 331
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=33.45 E-value=2.8e+02 Score=25.34 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=16.5
Q ss_pred CCCCCcccHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010853 191 GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 223 (499)
Q Consensus 191 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 223 (499)
|++--...|..-...+...|++++|-++-....
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP 388 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAP 388 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc
Confidence 443334445545555555555555555554443
No 332
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.50 E-value=1.7e+02 Score=23.65 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=8.7
Q ss_pred CChhhHHHHHHHHHh
Q 010853 140 GRNHGASRVVYVMRK 154 (499)
Q Consensus 140 ~~~~~A~~~~~~~~~ 154 (499)
|+.+-+..+++.-..
T Consensus 57 g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 57 GVNACIMPLLQIDKD 71 (256)
T ss_dssp TBCTTHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCc
Confidence 666666666655443
No 333
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=31.47 E-value=1.7e+02 Score=22.90 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=9.2
Q ss_pred HHHcCCCHhHHHHHHHh
Q 010853 100 SLCREGYVNEVFRIAED 116 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~ 116 (499)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 8 QACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhc
Confidence 34455666555555554
No 334
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=30.25 E-value=76 Score=20.36 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH
Q 010853 35 AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 92 (499)
Q Consensus 35 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 92 (499)
+.++-+++...|+.|+..+...++..|...+.. +..+..++..-+...++..|+..
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~--~~e~V~ew~Afs~s~~~~~lt~~ 60 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQN--EEGMVGELIAFCTSTHKVGLTSE 60 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCC--HHHHHHHHTTHHHHTTCCCCCTT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCCCHH
Confidence 566778888889999888888899888887763 55555555544444445666544
No 335
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.86 E-value=2e+02 Score=22.53 Aligned_cols=38 Identities=11% Similarity=-0.058 Sum_probs=23.8
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+-.+.+.|+.++.+|++.|-.|....-..++-+.-.-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45678888888888888775555444444444444444
No 336
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.52 E-value=1.9e+02 Score=22.19 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=3.3
Q ss_pred HHHHHHhcC
Q 010853 272 VINGFCKMG 280 (499)
Q Consensus 272 l~~~~~~~~ 280 (499)
.+.++.+.|
T Consensus 158 A~~aL~~~~ 166 (201)
T 3ltj_A 158 AADALGEIG 166 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
No 337
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.33 E-value=1.9e+02 Score=22.17 Aligned_cols=121 Identities=13% Similarity=-0.004 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHH
Q 010853 125 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 204 (499)
Q Consensus 125 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 204 (499)
+...-...+.++...++.+.. ..+..+.. .++...-...+.++.+.++.+.. ..+..+.. .++...-...+.
T Consensus 58 ~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~ 129 (201)
T 3ltj_A 58 DAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAF 129 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH-HHHHHHHc---CCCHHHHHHHHH
Confidence 333444455555555554333 33333332 24666666666666666664333 33333332 245545555556
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCChHHHHHHHHHHH
Q 010853 205 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFML 258 (499)
Q Consensus 205 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (499)
++...++.+ +...+..+.. .++..+-...+.++...++.+ +...+..+.
T Consensus 130 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~~-~~~~L~~~l 178 (201)
T 3ltj_A 130 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGER-VRAAMEKLA 178 (201)
T ss_dssp HHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSHH-HHHHHHHHH
T ss_pred HHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCchh-HHHHHHHHH
Confidence 666555533 3333333332 234455555666666665533 334444433
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.01 E-value=82 Score=21.23 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=13.7
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHHHHHHHhcCC
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 141 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 141 (499)
.+.|.++++.+...|+ .+|..++.++...|+
T Consensus 53 ~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 53 RDQARQLIIDLETRGS----QALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHTTSCT----THHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCc
Confidence 4444444544444442 244444444433333
No 339
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.76 E-value=2e+02 Score=22.05 Aligned_cols=129 Identities=9% Similarity=0.008 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCcCHH---hHHHHHHHHHh-cCChhhHHHHHHHHhcCCCCCCHH---HHHHHHHHHH
Q 010853 347 GLFRLRRVEEAKEVFNCMLGIGVVADST---TYAIVIDGLCE-SNQLDEAKRFWDDIVWPSNIHDNY---VYAAMIKGLC 419 (499)
Q Consensus 347 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~ 419 (499)
..+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.....++.+.+++.|..++.. -.++.+...+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~ 123 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGG
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHH
Confidence 3344555555555566666665544432 12222222221 222333344555555555444322 1112222222
Q ss_pred hcCCH-HHHHHHHHHHHH-cCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 010853 420 RSGKI-HEAVHFLYELVD-SGVTPNIVCY--NVVIDGACKLSMKREAYQILREMRKNGLN 475 (499)
Q Consensus 420 ~~g~~-~~a~~~~~~~~~-~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 475 (499)
..+.. ..-.++++-+.+ .|..++.... .+-+....+.|..+-+.-+.+.+.+.+++
T Consensus 124 ~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp GCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred HcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 23322 344556666666 6665544321 12233334455554333333334444443
No 340
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=28.69 E-value=1.3e+02 Score=28.21 Aligned_cols=27 Identities=11% Similarity=-0.169 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 436 (499)
-...++..|.+.|-.+.|.++++.+-.
T Consensus 518 d~e~vL~iCa~l~L~~~ar~I~k~~g~ 544 (570)
T 3f3f_C 518 DIEWMLSICVEWRLPEIAKEIYTTLGN 544 (570)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344444555555555555555544433
No 341
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=28.63 E-value=1.9e+02 Score=21.75 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=12.6
Q ss_pred ccHHHHHHHHhcCCCHHHHHHHHHH
Q 010853 197 HTYKVLVEGLCGESDLEKARKVLQF 221 (499)
Q Consensus 197 ~~~~~l~~~~~~~~~~~~a~~~~~~ 221 (499)
.+|.-++..+.+...+-.....|+.
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhhc
Confidence 4555555555555445455444443
No 342
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=28.37 E-value=1.1e+02 Score=23.96 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HhHHHHHHHhccCCCCCCchhhHHHH----HHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 010853 107 VNEVFRIAEDMPQGKSVNEEFACGHM----IDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 177 (499)
Q Consensus 107 ~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 177 (499)
++.|+.+++.+.+....+-......+ +..|.+.|.+++|.++|++.... .++..-...-+....+..+.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~--~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD--PNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC--CCCchHHHHHHHHHHHccCC
No 343
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=27.72 E-value=3.3e+02 Score=24.28 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=27.7
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHhCCCCCChh--hHHHHHHHHhccCCHHHHHH
Q 010853 21 SLTSALAITGEMDVAYKVFDEMRHCGVLPNSL--TYSVLVRGVLRTRDVERANV 72 (499)
Q Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~ 72 (499)
+.....+..|+.+-+..++ +.|..|+.. ...+.+...+..|+.+-+.-
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~ 65 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLL----QRGASPNVSNVKVETPLHMAARAGHTEVAKY 65 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHH----HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 3344446778776554444 445555432 23357777888887765544
No 344
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.63 E-value=1.6e+02 Score=20.74 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCccCHHhHHHHHHHHHcCCCHhHHHHHHHhccC
Q 010853 67 VERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ 119 (499)
Q Consensus 67 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 119 (499)
.+++.+-+.-++..+... .+.++...--.-+..+...++++.|.++.-.+..
T Consensus 38 ~~D~~KRL~~LfdkLn~~-~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 38 CDDISRRLALLREQWAGG-KLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344544445555555544 4444433323333344555667666666655543
No 345
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.35 E-value=1.3e+02 Score=21.77 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=12.0
Q ss_pred HHHHHcCCCHhHHHHHHHh
Q 010853 98 VDSLCREGYVNEVFRIAED 116 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~ 116 (499)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444556777777777766
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.29 E-value=3.6e+02 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHH
Q 010853 162 VSYNSIVHGLCKHGGCMRAYQLLEE 186 (499)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~a~~~~~~ 186 (499)
..|..-...+...|++++|.++-..
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA~ 386 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAAN 386 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444445555555555555555443
No 347
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=27.12 E-value=2.4e+02 Score=22.50 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=12.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010853 416 KGLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 416 ~~~~~~g~~~~a~~~~~~~~~ 436 (499)
..|.+.|.+++|.+++++...
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHhcchHHHHHHHHHHhc
Confidence 345566666666666666554
No 348
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=27.03 E-value=2.1e+02 Score=21.86 Aligned_cols=91 Identities=8% Similarity=0.054 Sum_probs=45.2
Q ss_pred HcCCCHhHHHHHHHhccCCCCCCc-hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh---HHHHHHHHHc-cCC
Q 010853 102 CREGYVNEVFRIAEDMPQGKSVNE-EFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS---YNSIVHGLCK-HGG 176 (499)
Q Consensus 102 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~-~~~ 176 (499)
++.|+++....+++.-.. . .+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..+|... .+.|..++.. ..+
T Consensus 14 a~~g~~~~~~~l~~~~~~--~-~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~ 89 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYE--D-KESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGND 89 (186)
T ss_dssp HHHSCHHHHHHHHHHSSS--C-HHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTC
T ss_pred HHcCCHHHHHHHHhcCcc--c-ccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcc
Confidence 455777766666654211 1 11 1122 234445556666655667777777776665432 2222222211 223
Q ss_pred hhHHHHHHHHHHhCCCCCCc
Q 010853 177 CMRAYQLLEEGIQFGYLPSE 196 (499)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~ 196 (499)
.....++.+.+++.|..++.
T Consensus 90 ~~~~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSSS
T ss_pred hhhHHHHHHHHHHCCCCCCc
Confidence 33445566666666666554
No 349
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.53 E-value=2.4e+02 Score=22.28 Aligned_cols=90 Identities=7% Similarity=-0.007 Sum_probs=46.5
Q ss_pred hhHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCCHHHHHHHHHHHHHHhhhccCCccCHH--hHH
Q 010853 20 ASLTSALAITGEMDVAYKVFDEMRHCGVLPNSLT--YSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA--AFA 95 (499)
Q Consensus 20 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~ 95 (499)
.+.....++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-... +++. +..++.. .-.
T Consensus 10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~-----g~~~~~~~~~g~ 80 (241)
T 1k1a_A 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL----LVTA-----GASPMALDRHGQ 80 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH----HHHT-----TCCTTCCCTTSC
T ss_pred CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH----HHHc-----CCCccccCCCCC
Confidence 3444555788888888888887777665444321 1123344445666654432 2221 2211110 111
Q ss_pred HHHHHHHcCCCHhHHHHHHHhcc
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMP 118 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~ 118 (499)
+.+...+..|+.+-+..+++...
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAA 103 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCC
Confidence 23444556777777766666654
No 350
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.45 E-value=3.3e+02 Score=23.87 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCCHhHHHHHHHhccC
Q 010853 95 ANLVDSLCREGYVNEVFRIAEDMPQ 119 (499)
Q Consensus 95 ~~l~~~~~~~~~~~~a~~~~~~~~~ 119 (499)
..++.-|...++.++|...++++..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 4577778888888888888888764
No 351
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.41 E-value=2e+02 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433333333333333444443
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=26.05 E-value=1.5e+02 Score=21.23 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=25.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555556667777777766655445555444445554444
No 353
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.02 E-value=47 Score=19.94 Aligned_cols=24 Identities=8% Similarity=-0.093 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCH
Q 010853 279 MGRIEEALKVLNDMVAGKFCAPDA 302 (499)
Q Consensus 279 ~~~~~~a~~~~~~~~~~~~~~~~~ 302 (499)
.-+++.|...|.++...+.++|++
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 457888888888877666556554
No 354
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=25.68 E-value=4.6e+02 Score=25.36 Aligned_cols=340 Identities=10% Similarity=0.012 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHhHHHHHHHhccCCCCCCchhhHHHHHHHHH-------hcCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 010853 96 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLC-------RSGRNHGASRVVYVMRKRGLTPSLVSYNSIV 168 (499)
Q Consensus 96 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 168 (499)
.+|--|.++|++++|.++.++....--..+ ..|...+..|+ ....-++...-|+...+. .|+...|...+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d-~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~--~~~~DpyK~Av 233 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVE-QSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS--SLDGDPYRLAV 233 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC--------------------------------CHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhh-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC--CCCCCHHHHHH
Q ss_pred HHHHccCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHhcCC-----------CHHHHHHHHHHHHhCCCCCchhhHHH
Q 010853 169 HGLCKHGGCMRAYQLLEEGIQF-GYLPSEHTYKVLVEGLCGES-----------DLEKARKVLQFMLSKKDVDRTRICNI 236 (499)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (499)
-...-.-+.. -... .+..+..-|-.+=-.+.+.+ -+....+.+.+.-+....+ .
T Consensus 234 Y~Iig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------l 299 (661)
T 2qx5_A 234 YKLIGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------Y 299 (661)
T ss_dssp HHHHHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------C
T ss_pred HHHHhccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------H
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHc--
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-- 314 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 314 (499)
+...+.-.|+++.|.+++-.. ...+...+...+..|.-.+- -+.+..... .-...-+..|+..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~-~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKK-PKRDIRFANILANYTKSF 367 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCC-CcccccHHHHHHHHHHHh
Q ss_pred -cCCHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcCH-------------------H
Q 010853 315 -VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS-------------------T 374 (499)
Q Consensus 315 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------~ 374 (499)
..+..+|++.|.-+-...|..-.......+-......++++ .++..+...|..... .
T Consensus 368 ~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~---~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~ 444 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVLETKEFT---VLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHT 444 (661)
T ss_dssp TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH---HHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH---HHcCCcCCCCCcCcchHHHhhcccccccHHHHHHH
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHHc-
Q 010853 375 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK----------------IHEAVHFLYELVDS- 437 (499)
Q Consensus 375 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------~~~a~~~~~~~~~~- 437 (499)
.......-+...|++++|..+|+.+ .....-..+.|.++.-....-. ...|.++.+.....
T Consensus 445 i~~~aA~~ae~~G~~~dAi~LY~La--~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~ 522 (661)
T 2qx5_A 445 ITEQAARRADEDGRIYDSILLYQLA--EEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNA 522 (661)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHh--cCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCc
Q ss_pred ----CCCC-ChhhHHHHHHHH-----HhcCChHHHHHHHHHH
Q 010853 438 ----GVTP-NIVCYNVVIDGA-----CKLSMKREAYQILREM 469 (499)
Q Consensus 438 ----~~~~-~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m 469 (499)
.+.+ +..|+..|+... .+.|+++.|++.++++
T Consensus 523 ~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 523 GISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
No 355
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.67 E-value=88 Score=22.46 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=22.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC
Q 010853 22 LTSALAITGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTR 65 (499)
Q Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 65 (499)
...++...+..-.|.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666665544444445444445554444
No 356
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.58 E-value=1e+02 Score=17.66 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHhCCCCCC
Q 010853 30 GEMDVAYKVFDEMRHCGVLPN 50 (499)
Q Consensus 30 ~~~~~a~~~~~~~~~~~~~~~ 50 (499)
++..+|+++++.+.+.|--|.
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 467789999999988885554
No 357
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.52 E-value=3.1e+02 Score=23.27 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=21.8
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCCC
Q 010853 349 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD 407 (499)
Q Consensus 349 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 407 (499)
+..|+.+ +.+.+.+.|..++..+ . +...++.|+.+- .+.+++.|-.||
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~--~-L~~A~~~~~~~i----v~~Ll~~GA~~d 328 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD--L-VMTARRNYDHSL----VKVLLSHGAKED 328 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC--H-HHHHHHTTCHHH----HHHHHHTTCCC-
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC--H-HHHHHHcCCHHH----HHHHHHCcCCCC
Confidence 3455543 3344455665555443 2 233344565543 333444554444
No 358
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.49 E-value=3.1e+02 Score=23.66 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=9.5
Q ss_pred HHHHcCCCHhHHHHHHHh
Q 010853 99 DSLCREGYVNEVFRIAED 116 (499)
Q Consensus 99 ~~~~~~~~~~~a~~~~~~ 116 (499)
...+..|+.+.+..+++.
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666655555544
No 359
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.48 E-value=2.5e+02 Score=22.09 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=8.9
Q ss_pred HHHcCCCHhHHHHHHHh
Q 010853 100 SLCREGYVNEVFRIAED 116 (499)
Q Consensus 100 ~~~~~~~~~~a~~~~~~ 116 (499)
..++.|+.+....+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34455565555555543
No 360
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=25.06 E-value=91 Score=20.27 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh
Q 010853 318 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 350 (499)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 350 (499)
.++|...|.+++...++.|+. +|...+...+.
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i~~ 47 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKIVF 47 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 456666677777666666653 55555554443
No 361
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.72 E-value=2.5e+02 Score=21.97 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=12.0
Q ss_pred HHHHHcCCCHhHHHHHHHhc
Q 010853 98 VDSLCREGYVNEVFRIAEDM 117 (499)
Q Consensus 98 ~~~~~~~~~~~~a~~~~~~~ 117 (499)
+...++.|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44455567777666666553
No 362
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=24.50 E-value=1.3e+02 Score=21.82 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=25.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 010853 131 HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 175 (499)
Q Consensus 131 ~l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 175 (499)
.++..+...+..-.|.++++.+.+.+...+..|..--+..+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 355555555556667777777776655555555444444444444
No 363
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=24.44 E-value=2.5e+02 Score=21.79 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhc
Q 010853 37 KVFDEMRHCGVLPNSLTYSVLVRGVLR 63 (499)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 63 (499)
+.+.+++++|.+-|...-|.||...++
T Consensus 36 a~L~eLirs~~PeDL~~AN~LiK~m~~ 62 (186)
T 1oxz_A 36 KMLARLLKSSHPEDLRAANKLIKEMVQ 62 (186)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHhc
Confidence 466677776654456666777766654
No 364
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.24 E-value=2.7e+02 Score=22.44 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=34.1
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCChhh-------HHHHHHHHH--ccCChhHHHHHHHHH
Q 010853 132 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS-------YNSIVHGLC--KHGGCMRAYQLLEEG 187 (499)
Q Consensus 132 l~~~~~~~~~~~~A~~~~~~~~~~g~~p~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 187 (499)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34445677888888888887777766655333 233333332 557766666666554
No 365
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.01 E-value=3.7e+02 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 010853 129 CGHMIDSLCRSGRNHGASRVVYVMR 153 (499)
Q Consensus 129 ~~~l~~~~~~~~~~~~A~~~~~~~~ 153 (499)
...++.-|...|+.++|...++++.
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4567777777888888888887775
No 366
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.00 E-value=2.7e+02 Score=22.07 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHhhCCCCcCHHhHHHHHHHHHhcC
Q 010853 350 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 387 (499)
Q Consensus 350 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (499)
+-.+.+.|+.++.+|++.|-.|....-..++-+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45678888888888888775554444444444444444
No 367
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.30 E-value=1.5e+02 Score=18.81 Aligned_cols=8 Identities=13% Similarity=0.517 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 010853 392 AKRFWDDI 399 (499)
Q Consensus 392 a~~~~~~~ 399 (499)
+.++++.+
T Consensus 36 ~~el~~~l 43 (83)
T 2fu4_A 36 AEDLYKRL 43 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 368
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.28 E-value=1.4e+02 Score=21.72 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=21.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 010853 237 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG 280 (499)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 280 (499)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33444444444555555555555554445444444444444444
No 369
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.23 E-value=1.7e+02 Score=19.49 Aligned_cols=27 Identities=19% Similarity=-0.090 Sum_probs=16.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHH
Q 010853 54 YSVLVRGVLRTRDVERANVLMFKLWER 80 (499)
Q Consensus 54 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 80 (499)
+.-....+.+.|+|++|+..+.+...-
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 334556677777777777666555443
No 370
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=23.08 E-value=85 Score=19.73 Aligned_cols=32 Identities=6% Similarity=0.250 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHh
Q 010853 318 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 350 (499)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 350 (499)
.++|...|.+++...++.|+. +|...+..+..
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~-tWe~~~~~i~~ 45 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNA-SWEQAMKMIIN 45 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTC-CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHHcc
Confidence 456666666666666665543 55555554443
No 371
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=22.91 E-value=3.7e+02 Score=23.28 Aligned_cols=119 Identities=13% Similarity=0.147 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--------hhH
Q 010853 377 AIVIDGLCESNQLDEAKRFWDDIVWPSN--IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI--------VCY 446 (499)
Q Consensus 377 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~ 446 (499)
|.++..+...+..+.-..+++.+...-. .-+... ..++..+...+..+.-..+++++...+-.|.. ..-
T Consensus 218 n~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~g-s~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~yg 296 (351)
T 3gvo_A 218 NYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFA-SNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYA 296 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTH-HHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTH
T ss_pred HHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcch
Confidence 5566667777777666666665531100 001111 23444555566666556667776642111110 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHhHHHHHHHHhcccCCCcc
Q 010853 447 NVVIDGACKLSMKREAYQILREMRK-----NGLNPDAVTWRILDKLHGNRGNDFG 496 (499)
Q Consensus 447 ~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l~~~~~~~g~~~~ 496 (499)
|.++......++.+.-..+++.+.. ...+-.......+-+.+.+.+.|.|
T Consensus 297 nyViq~~L~~~~~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~~~~~~~~~~ 351 (351)
T 3gvo_A 297 NYVVQKMIDMAEPAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKYYLKNSPDLG 351 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhhcCccCC
Confidence 4456666666776665566665532 1223345666677778887777643
No 372
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.60 E-value=1.4e+02 Score=18.33 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 010853 410 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 455 (499)
Q Consensus 410 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (499)
.++.++..++...-.++++-.+.++.+.| ..+...|-.-++.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 35566666666666777777777777776 3355666555555554
No 373
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=22.57 E-value=1.1e+02 Score=26.60 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010853 412 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC------YNVVIDGACKLSMKREAYQILREMRK 471 (499)
Q Consensus 412 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~m~~ 471 (499)
|.++..+...+..+.-..+++.+. ++... -..++..|...+..+.-..+++++..
T Consensus 218 n~ViQ~~l~~~~~~~~~~i~~~l~-----~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~ 278 (351)
T 3gvo_A 218 NYVIQHVLEHGRPEDKSKIVSEIR-----GKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCC 278 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTT-----TCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCchhhHHHHHHHHH-----HHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 455666666777665555554432 22211 12345555555555555556666653
No 374
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=22.25 E-value=6.3e+02 Score=25.66 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=47.0
Q ss_pred HHHHHHHhcCC---hhhHHHHHHHHHhcC----CCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 010853 131 HMIDSLCRSGR---NHGASRVVYVMRKRG----LTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 203 (499)
Q Consensus 131 ~l~~~~~~~~~---~~~A~~~~~~~~~~g----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 203 (499)
.++...|..|. .+.|.+.|+.....+ +.||.. ..+...-.+.|+.++-..+++...... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34555566665 345677776665432 334432 222333334565555555555555432 223334566
Q ss_pred HHHhcCCCHHHHHHHHHHHHh
Q 010853 204 EGLCGESDLEKARKVLQFMLS 224 (499)
Q Consensus 204 ~~~~~~~~~~~a~~~~~~~~~ 224 (499)
.+++...+.....++++....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhC
Confidence 666666777777777666653
No 375
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.90 E-value=1.9e+02 Score=20.85 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=11.0
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 010853 133 IDSLCRSGRNHGASRVVYV 151 (499)
Q Consensus 133 ~~~~~~~~~~~~A~~~~~~ 151 (499)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344556666666666655
No 376
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.90 E-value=2.7e+02 Score=24.09 Aligned_cols=25 Identities=12% Similarity=0.464 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 010853 269 LNTVINGFCKMGRIEEALKVLNDMV 293 (499)
Q Consensus 269 ~~~l~~~~~~~~~~~~a~~~~~~~~ 293 (499)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4667788888888888888888775
No 377
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.67 E-value=2.3e+02 Score=26.72 Aligned_cols=74 Identities=4% Similarity=-0.154 Sum_probs=32.6
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHhcCCCHHHHH
Q 010853 141 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKAR 216 (499)
Q Consensus 141 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 216 (499)
+.........++..+=.--+..-...++..|.+.|-.+.|.++++.+-..-+. +...| ..+..|++.|+++.+.
T Consensus 496 ~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 496 TRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp CHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred chhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 34445555666555422224556677888888888888888888877654332 33444 5666778888877653
No 378
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=21.23 E-value=2.2e+02 Score=19.94 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhCCCCcCHHhHHHHHH
Q 010853 354 VEEAKEVFNCMLGIGVVADSTTYAIVID 381 (499)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 381 (499)
+.+|..-+++.... ++|......++.
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~ 29 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQ 29 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 44455555554433 234334444443
No 379
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.10 E-value=1.8e+02 Score=20.52 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHHhh
Q 010853 348 LFRLRRVEEAKEVFNCMLG 366 (499)
Q Consensus 348 ~~~~~~~~~a~~~~~~~~~ 366 (499)
+...++++.|..+...+..
T Consensus 71 al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 71 ELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555443
No 380
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.98 E-value=1.4e+02 Score=17.52 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHH
Q 010853 429 HFLYELVDSGVTPNIVCYNVVIDGACKLSM--KREAYQILREM 469 (499)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m 469 (499)
+.++.+++.|+.++ ....+..+.|. .+.|++.+.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 33455555555442 23334555555 66677766666
No 381
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=20.69 E-value=2.8e+02 Score=20.92 Aligned_cols=63 Identities=5% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHhcCChhhHHHHHHHHhcCCCCC--CHHHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 010853 373 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAMIK------GLCRSGKIHEAVHFLYELVD 436 (499)
Q Consensus 373 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~g~~~~a~~~~~~~~~ 436 (499)
...+..-+..|-. |++=+|.++|+.+=.....+ ....|..||. ...+.|+...|..++.+...
T Consensus 33 ~~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 382
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.18 E-value=4.2e+02 Score=22.79 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 010853 411 YAAMIKGLCRSGKIHEAVHFLYELVDSG 438 (499)
Q Consensus 411 ~~~li~~~~~~g~~~~a~~~~~~~~~~~ 438 (499)
...-+....+.+++..|..+.+++++.+
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3444555566666666666666666654
Done!