BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010854
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 134 bits (338), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 132/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVEKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 132/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 132/506 (26%), Positives = 210/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 132/506 (26%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L + ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVAKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 131/506 (25%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S ++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 131/506 (25%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R G PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/506 (25%), Positives = 209/506 (41%), Gaps = 39/506 (7%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
KGD +AI MPM A + LA G V I F+ +A + S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADE 188
Query: 62 ILRGGRKFPLYSKVLGA-------APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYH 114
+R GR PL V A + IVL G+D+ +DL W+D +
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS-- 245
Query: 115 PRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHI-DLKVGDVYC 173
P + N D + IL++SG+TG+PK + T + A + ++ D GD+Y
Sbjct: 246 --PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYW 302
Query: 174 WPTNLGWVMG-PVILFSSFLNGATLALYQGSPLERSFGKFVQ---DAGVTVLGTVPSLVK 229
++GWV G +L+ GAT +++G P + + Q V +L T P+ ++
Sbjct: 303 CTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362
Query: 230 AW--RNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ 287
A +EG D + +R S GE N + W W E C +
Sbjct: 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWY----WKKIGKEKCPVVDTWWQTET 418
Query: 288 GSLLQPQAFGAFSTATMTAGL-------VILDECGVPYPDDQPCVGEVGLFPLYLGASDR 340
G + GA +A ++D G +P + G + + + G + R
Sbjct: 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDSWPGQA-R 475
Query: 341 LLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE 400
L DHE +K M GD +R GY + GR DD +N+ G + + EIE
Sbjct: 476 TLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 401 RVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPL 460
A I E A + + A G + + +V L G P+ L ++ ++ PL
Sbjct: 534 SAL-VAHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPSPE-LYAEVRNWVRKEIGPL 590
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLR 486
++ P+T S K++RR+LR
Sbjct: 591 ATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 118/513 (23%), Positives = 217/513 (42%), Gaps = 48/513 (9%)
Query: 4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
KGD +A+ MPM A+I LAI G + + F++ + R+ +K + T D
Sbjct: 138 KGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESN 197
Query: 64 RGGRKFP---LYSKVLGAAP-LKAIVLPAIGNDVGIPLRE-QDLSWKDFLSSVDYHPRPN 118
RGG+ + L P ++ +++ N+ + +DL W + +
Sbjct: 198 RGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW-----ATEKKKYKT 252
Query: 119 YYSPVYNPVDAV--VNILFSSGTTGEPKAIPWTQ-------LSSIRCTAEGWAHIDLKVG 169
YY PVD+ + +L++SG+TG PK + + L ++R T D
Sbjct: 253 YYP--CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT------FDTHQE 304
Query: 170 DVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGSPLERSFGKF---VQDAGVTVLGTVP 225
DV+ ++GW+ G +++ L G +++G+P ++ ++ + + VT P
Sbjct: 305 DVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAP 364
Query: 226 SLVKAWRNT--NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNA--IIESCGGTEL 281
+ ++ + + +E +R S GE + W S K N I+++ TE
Sbjct: 365 TALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424
Query: 282 SSAYIQ--GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASD 339
S + + P G+ S V+LD + G + + + +
Sbjct: 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFA- 483
Query: 340 RLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
R + +H+ + Y G GD + GYI + GR DD +N+ G + S+ EI
Sbjct: 484 RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEI 541
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG---FTSQPDKLKMIFSK---AI 453
E + D + E A + + G + + FVVLK T+ D+L+ I +
Sbjct: 542 EAAIIE-DPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTV 599
Query: 454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLR 486
+ + P L+ +V + P+T S K++RR+LR
Sbjct: 600 RKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 632
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 156/367 (42%), Gaps = 26/367 (7%)
Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVYCWPTNL--GWVMG 183
D + L+SSG+TG+PK T +++ TAE +A L + DV L + +G
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTH-ANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 184 PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243
+ F + + + + + F + V+ TV VP+L + L
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRP-TVFYGVPTLYANMLVSPNLPARADV 300
Query: 244 KIRSFASTGETSNVDDDLWLSSKAWYNA-IIESCGGTELSSAYIQGSLLQPQAFGAFSTA 302
IR S GE + ++ A + I++ G TE+ ++ + +G
Sbjct: 301 AIRICTSAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVE-YGTTGRP 357
Query: 303 TMTAGLVILDECGVPYPDDQPCVGEVGLFPLYL-GASDRLLNADHEEVYFRGMPMYKGMC 361
+ + DE G PD GEVG LY+ G S ++ ++ E + + G
Sbjct: 358 VPGYEIELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNRE---KSRATFLGEW 407
Query: 362 LRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPA 421
+R GD R G + GR+DD + + G S VE+E V Q D ++LE A + V
Sbjct: 408 IRS-GDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVVGVD-- 463
Query: 422 GGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481
GG FVVLK+ F + L ++ +L P + V + P+TA+ K+
Sbjct: 464 HGGLVKTRAFVVLKREFAPS-EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 482 RRVLRDQ 488
R LR+Q
Sbjct: 523 RFKLREQ 529
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 123/500 (24%), Positives = 191/500 (38%), Gaps = 67/500 (13%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
+KGD +A+ MP +V ++ G V V I AA E++ L S +K
Sbjct: 65 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSK------V 118
Query: 62 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
++ G P+ + A V IG D L E+ S +V+ N +
Sbjct: 119 VIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAERLRSAAADEPAVECGGDDNLF- 174
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGW 180
I+++SGTTG PK + T S+ A WA ID++ D P +
Sbjct: 175 -----------IMYTSGTTGHPKGVVHTH-ESVHSAASSWASTIDVRYRDRLLLPLPMFH 222
Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
V + S + G TL + + V++ V + G VP+++ R L
Sbjct: 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VCIGGAVPAILNFMRQVPEFAEL 281
Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AIIESCGGTELSSAYIQGSLLQP 293
D R F + G + + A N A+ ESCGG L LL
Sbjct: 282 DAPDFRYFITGGAPM---PEALIKIYAAKNIEVVQGYALTESCGGGTL--------LLSE 330
Query: 294 QAF---GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVY 350
A G+ ATM + + + GV + GEV + SD LL +E +
Sbjct: 331 DALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVVI------KSDILL----KEYW 377
Query: 351 FRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADE 408
R R GDI + GY+ ++ R D + GG EIE V
Sbjct: 378 NRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGV-P 436
Query: 409 SILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV 468
+ E A I + G E+ VV + S+ ++ ++ + KL KV +
Sbjct: 437 GVSEVAVIGLPDEKWG-EIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPK--KVIFAEA 493
Query: 469 VPEFPRTASNKLLRRVLRDQ 488
+P P + K+L+ VLR+Q
Sbjct: 494 IPRNP---TGKILKTVLREQ 510
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 124/536 (23%), Positives = 205/536 (38%), Gaps = 102/536 (19%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I D
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD- 154
Query: 62 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD--LSWKDFLSSVDYHPRPNY 119
+V+ A P++ + + + D L++K L+
Sbjct: 155 ------------EVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEAS-----TT 197
Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPT 176
+ V I F+SGT+G PK + SS+ A+ GW L+ D+ +
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWT--GLQASDIMWTIS 254
Query: 177 NLGWV-------MGPVIL-----------FSSFLNGATLALY-----QGSPL-------- 205
+ GW+ M P L F + TL+ Y G+P+
Sbjct: 255 DTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314
Query: 206 ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 263
+ S KF +G +P ++ WR GLD + TG T V + +
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKI 371
Query: 264 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP 323
K Y SC ++ +G++L P G + G+ +P
Sbjct: 372 --KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG---------------DIGIRVKPIRP 412
Query: 324 CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 383
+G+F Y+ N D RG GD + GY GRA
Sbjct: 413 ----IGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRA 455
Query: 384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-P 442
DD +N G + E+E + +++ETA IS SP EV+ FVVL F S P
Sbjct: 456 DDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDPVRGEVVKAFVVLASQFLSHDP 513
Query: 443 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSR 498
++L + ++S P ++ V P+T + K+ R LRD+ + ++S ++R
Sbjct: 514 EQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK-EWKMSGKAR 568
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 124/536 (23%), Positives = 205/536 (38%), Gaps = 102/536 (19%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
+GD +A+ +P ++ L I AG + + + +I RL++SKAK I D
Sbjct: 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD- 154
Query: 62 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQD--LSWKDFLSSVDYHPRPNY 119
+V+ A P++ + + + D L++K L+
Sbjct: 155 ------------EVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEAS-----TT 197
Query: 120 YSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPT 176
+ V I F+SGT+G PK + SS+ A+ GW L+ D+ +
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWT--GLQASDIMWTIS 254
Query: 177 NLGWV-------MGPVIL-----------FSSFLNGATLALY-----QGSPL-------- 205
+ GW+ M P L F + TL+ Y G+P+
Sbjct: 255 DTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ 314
Query: 206 ERSFGKFVQDAGVTVLGT--VPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWL 263
+ S KF +G +P ++ WR GLD + TG T V + +
Sbjct: 315 DLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKI 371
Query: 264 SSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQP 323
K Y SC ++ +G++L P G + G+ +P
Sbjct: 372 --KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG---------------DIGIRVKPIRP 412
Query: 324 CVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA 383
+G+F Y+ N D RG GD + GY GRA
Sbjct: 413 ----IGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRA 455
Query: 384 DDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ-P 442
DD +N G + E+E + +++ETA IS SP EV+ FVVL F S P
Sbjct: 456 DDIINSSGYRIGPSEVENALME-HPAVVETAVIS-SPDPVRGEVVKAFVVLASQFLSHDP 513
Query: 443 DKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHELSVRSR 498
++L + ++S P ++ V P+T + K+ R LRD+ + ++S ++R
Sbjct: 514 EQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK-EWKMSGKAR 568
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 358 KGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAIS 417
KG R GD+ G++ Q R + + G + E+E + + E++ + A I
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXK-HEAVXDVAVIG 471
Query: 418 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTAS 477
P EV F+VLK + + D+ +I + ++ +++ +V V+ V E PRTAS
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGKVDEEDII--EWVRERISGYKRVREVEFVEELPRTAS 528
Query: 478 NKLLRRVLRDQ 488
KLLRR+LR++
Sbjct: 529 GKLLRRLLREK 539
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 111/318 (34%), Gaps = 65/318 (20%)
Query: 114 HPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQ---LSSIRCTAEGWAHIDLKVGD 170
HP ++ + +P D V S GTTG PK IP T S+R + E +
Sbjct: 171 HPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVE-ICQFTQQTRY 228
Query: 171 VYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
+ P + M FL G T+ L F ++ V V VP V
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCF-PLIEKHQVNVTALVPPAVSL 287
Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQ--- 287
W +EG ++ S + GG LS+
Sbjct: 288 WLQA-LIEGESRAQLASLK-----------------------LLQVGGARLSATLAARIP 323
Query: 288 ---GSLLQPQAFGAFSTATMTAGLV-----------ILDECGVPY-PDDQPCVGEVGLFP 332
G LQ Q FG M GLV I+ G P PDD+ V + P
Sbjct: 324 AEIGCQLQ-QVFG------MAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNP 376
Query: 333 LYLGASDRLLNADHEEVYFRGM---PMYKGMCLRRHG-----DIIKRTVGGYIIVQGRAD 384
L G RL+ FRG P + +G D+I GYI VQGR
Sbjct: 377 LPQGEVGRLMT--RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREK 434
Query: 385 DTMNLGGIKTSSVEIERV 402
D +N GG K ++ EIE +
Sbjct: 435 DQINRGGEKIAAEEIENL 452
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 18/162 (11%)
Query: 328 VGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTM 387
VGLF Y +R H+ Y GD+ GY+ GRADD +
Sbjct: 432 VGLFVHYGKDPERTEETWHDGYY-------------HTGDMAWMDEDGYLWFVGRADDII 478
Query: 388 NLGGIKTSSVEIERVCDQADESILETAAISV-SPAGGGPEVLVIFVVLKKGFTSQPDKLK 446
G K E+E Q ++LE A V P G +V+ +VL K +T D LK
Sbjct: 479 KTSGYKVGPFEVESALIQH-PAVLECAITGVPDPVRG--QVIKATIVLTKDYTPS-DSLK 534
Query: 447 MIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQ 488
+++ P +++ VPE P+T S K+ R +RD+
Sbjct: 535 NELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDK 576
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 95/405 (23%), Positives = 150/405 (37%), Gaps = 104/405 (25%)
Query: 130 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 189
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 190 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVL------------------------- 221
+ L GA L G PLE G+ V GVT+L
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAI 332
Query: 222 -----GTVPSLVKAWRNTNCLE-GLDWTKIRSFASTGETSNVDDDLW---------LSSK 266
+VP + KA R+ L G + S T + V DL L+ K
Sbjct: 333 TGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK 392
Query: 267 AWY--NAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPC 324
Y + ++ L Y+ G+ L A G S +TA + D P
Sbjct: 393 RAYVLDDDLKPAANGALGELYVAGAGL---AHGYVSRPALTAERFVAD----------PF 439
Query: 325 VGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRAD 384
G G E +Y R GD+ +R G + GRAD
Sbjct: 440 AGPGG-----------------ERMY-------------RTGDLARRRADGVLEYVGRAD 469
Query: 385 DTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD- 443
D + + G + E+E + AA+ + G + LV +VV ++ + PD
Sbjct: 470 DQVKIRGFRVEPGEVE--ARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERA-DAPPDA 526
Query: 444 -KLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRVL 485
+L+ ++A+ + + P V+ VP E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVP------VECVPVDELPRTPNGKLDRRAL 565
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 6/130 (4%)
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
R GDI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +S+
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAMVSMPDQFL 468
Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
G E +F++ + + + + + + P V+ V FP+T K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 484 VLRDQIKHEL 493
LR+ I +L
Sbjct: 524 ALREAISEKL 533
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
R GDI++ T GYI+V+GRA D +N GG K ++ E+E A ++ + A +S
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHL-LAHPAVHDAAXVSXPDQFL 468
Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
G E +F++ + + + + + + P V+ V FP+T K+ ++
Sbjct: 469 G-ERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIP----DRVEFVESFPQTGVGKVSKK 523
Query: 484 VLRDQIKHEL 493
LR+ I +L
Sbjct: 524 ALREAISEKL 533
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 110/288 (38%), Gaps = 34/288 (11%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
+KGD +A+ MP +V ++ G V V I AA E++ L S +K
Sbjct: 51 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSK------V 104
Query: 62 ILRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYS 121
++ G P+ + A V IG D L E+ S +V+ N +
Sbjct: 105 VIYGAPSAPVIDAIRAQADPPGTVTDWIGAD---SLAERLRSAAADEPAVECGGDDNLF- 160
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH-IDLKVGDVYCWPTNLGW 180
I+++SGTTG PK + T S+ A WA ID++ D P +
Sbjct: 161 -----------IMYTSGTTGHPKGVVHTH-ESVHSAASSWASTIDVRYRDRLLLPLPMFH 208
Query: 181 VMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240
V + S + G TL + + V++ V + G VP+++ R L
Sbjct: 209 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER-VCIGGAVPAILNFMRQVPEFAEL 267
Query: 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYN-------AIIESCGGTEL 281
D R F + G + + A N A+ ESCGG L
Sbjct: 268 DAPDFRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTL 312
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 149/391 (38%), Gaps = 45/391 (11%)
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQ----LSSIRCT-AEGWAHIDLKVGDVYCWPT 176
PV P A + +++GTTG PK + ++ L S+ + +G A L DV
Sbjct: 170 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA---LSEKDVVLPVV 226
Query: 177 NLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236
+ V + +++ L GA L S + GVT VP++ A +
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLE 286
Query: 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQG-------S 289
G +R G S L + + + G TE S +Q S
Sbjct: 287 STGHRLKTLRRLVVGG--SAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344
Query: 290 LLQPQAFGAFSTATMTAGLVIL---DECGVPYPDDQPCVGEVGLFPL-----YLGASDRL 341
L + + + + LV L DE G P P D +GEV L Y G +
Sbjct: 345 LSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEAT 404
Query: 342 LNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401
+A + +FR GDI GY+ ++ R D + GG SSV++E
Sbjct: 405 RSALTPDGFFRT------------GDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN-PL 460
+ E A +++ L VV+ +G P++L KA +K P
Sbjct: 453 AL-MGHPKVKEAAVVAIPHPKWQERPLA--VVVPRGEKPTPEELNEHLLKAGFAKWQLPD 509
Query: 461 FKVSLVKVVPEFPRTASNKLLRRVLRDQIKH 491
V E PRT++ K L+R LR+Q K+
Sbjct: 510 AYV----FAEEIPRTSAGKFLKRALREQYKN 536
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 102/506 (20%), Positives = 190/506 (37%), Gaps = 61/506 (12%)
Query: 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 61
+GD I + +P + V+ +L G ++ + E+A + S+AK + TQ
Sbjct: 71 IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQAC 130
Query: 62 ILRGGRKFPLYSKV----LGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP 117
+ F S V + +AP D + E + ++ VD P
Sbjct: 131 YYEKVKDFARESDVKVMCVDSAP-----------DGCLHFSELTQADENEAPQVDISP-- 177
Query: 118 NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTN 177
D VV + +SSGTTG PK + T I A+ +D ++Y +
Sbjct: 178 ----------DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ---QVDGDNPNLYFHSED 224
Query: 178 LGWVMGPVILFSSFLNGATLALYQGSPLE-------RSFGKFVQDAGVTVLGTVPSLVKA 230
+ + P+ + + L G+P+ S ++ V++ VP ++ +
Sbjct: 225 VILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284
Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 290
+ L+ D + +R S G + + + +K + + G TE
Sbjct: 285 IAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLA 344
Query: 291 LQPQAF----GAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNAD 345
+ F GA T A + I+D E G P +QP GE+ + D+++
Sbjct: 345 FAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICI------RGDQIMKGY 396
Query: 346 HEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQ 405
+ + K L IV R + + G + + E+E +
Sbjct: 397 LNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD-RLKELIKYKGFQVAPAELEALL-I 454
Query: 406 ADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF--KV 463
A I + A + + G EV V FVV + + D++K SK + +F ++
Sbjct: 455 AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEIKQYISKQV------IFYKRI 507
Query: 464 SLVKVVPEFPRTASNKLLRRVLRDQI 489
V + P+ S K+LR+ L++++
Sbjct: 508 KRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 106/523 (20%), Positives = 188/523 (35%), Gaps = 81/523 (15%)
Query: 3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 62
++ D + + +P V+ +LA G + F EIA + + S K I T+
Sbjct: 111 NQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARY 170
Query: 63 LRGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSP 122
+ + PL + +V+ I ++ +P+ E L + + S S
Sbjct: 171 VDKIK--PLQND-------DGVVIVCIDDNESVPIPEGCLRFTELTQST------TEASE 215
Query: 123 VYNPV----DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNL 178
V + V D VV + +SSGTTG PK + T + A+ +D + ++Y ++
Sbjct: 216 VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGENPNLYFHSDDV 272
Query: 179 GWVMGPV--------ILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
+ P+ I+ GA + + + + +Q VTV VP +V A
Sbjct: 273 ILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-ELIQRCKVTVAPMVPPIVLA 331
Query: 231 WRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL 290
++ E D + IR S + + +++K + + G TE
Sbjct: 332 IAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLG 391
Query: 291 LQPQAF----GAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADH 346
+ F GA T A + I+D PD D L
Sbjct: 392 FAKEPFPVKSGACGTVVRNAEMKIVD------PD----------------TGDSLSRNQP 429
Query: 347 EEVYFRGMPMYKGMCLRRHGDIIKRTVGGY--------------IIVQGRADDTMNLGGI 392
E+ RG + KG G+ + + R + + G
Sbjct: 430 GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGF 489
Query: 393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKA 452
+ + E+E + I + A +++ G EV V FVV K D +K SK
Sbjct: 490 QVAPAELEALL-IGHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVKQFVSKQ 547
Query: 453 I--QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 493
+ ++N +F P+ S K+LR+ LR ++ + L
Sbjct: 548 VVFYKRINKVF------FTESIPKAPSGKILRKDLRAKLANGL 584
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 84/374 (22%), Positives = 149/374 (39%), Gaps = 34/374 (9%)
Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFL 192
I+++SGTTG+PK T ++I+ + ++ D + +N + ++S L
Sbjct: 612 IMYTSGTTGKPKGNITTH-ANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASML 670
Query: 193 NGATLALYQGSPL---ERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK-IRSF 248
N A L + L ER +Q+ V V+ +L + G DW K +R
Sbjct: 671 NAARLIIADEHTLLDTERLTDLILQE-NVNVMFATTALFNLLTDA----GEDWMKGLRCI 725
Query: 249 ASTGETSNVDDDLWLSSKAWYNAIIESCGGTE---LSSAYIQGSLLQPQAFGAFSTATMT 305
GE ++V +I G TE ++A++ L +
Sbjct: 726 LFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISN 785
Query: 306 AGLVILDECGVPYPDDQPCVGEVGLFPLY-LGASDRLLN-ADHEEVYFRGMPMYKGMCLR 363
A + IL+E P G VG + +G S +N AD + F P G L
Sbjct: 786 ASVYILNEQSQLQP-----FGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLY 840
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI-LETAAISVSPAG 422
R GD+ + G I GR DD + + G + +E+E + Q E ++ A +
Sbjct: 841 RTGDLARWLPDGTIEYAGRIDDQVKIRGHR---IELEEIEKQLQEYPGVKDAVVVADRHE 897
Query: 423 GGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLR 482
G + ++V + +++ +K K + + + P + E P T + K+ +
Sbjct: 898 SGDASINAYLVNRTQLSAE--DVKAHLKKQLPAYMVP----QTFTFLDELPLTTNGKVNK 951
Query: 483 RVL----RDQIKHE 492
R+L +DQ+ E
Sbjct: 952 RLLPKPDQDQLAEE 965
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 19/161 (11%)
Query: 4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63
KGD + +P I++ A++ AG VV++ S E+ ++ + K +L
Sbjct: 79 KGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPK-------LL 131
Query: 64 RGGRKFPLYSKVLGAAPLKAIVLPAIGNDVGIPLREQ--DLSWKDFLSSVDYHPRPNYYS 121
G R+ ++S L + L ++ + L Q D D++ + P +
Sbjct: 132 IGSRQHEVFSNNQFIDSLHDVNLSP---EIILMLNHQATDFGLLDWIET----PAETFVD 184
Query: 122 PVYNPVDAVVNILFSSGTTGEPKAIPWTQLS---SIRCTAE 159
P D V S G+TG PK IP T S+R +AE
Sbjct: 185 FSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE 225
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
GD+++RT G + V GR D +N GG K +S EIE++ E ++ A +++ G
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPE-VMHAALVAIVDEQFG- 478
Query: 426 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFPRTASNKLLRRV 484
E F+V + P+ ++ + + +K+ +K++ P TA K+ ++
Sbjct: 479 EKSCAFIV-----SRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQ 533
Query: 485 LR 486
LR
Sbjct: 534 LR 535
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 366 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425
GD+ K GY+ + GR D + GG EIE D A ++E+A I V A G
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AXPGVVESAVIGVPHADFGE 439
Query: 426 EVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVL 485
V + VV KG T D+ +++ + +L V V + PR K+ + VL
Sbjct: 440 GVTAV-VVRDKGATI--DEAQVL--HGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVL 494
Query: 486 RDQIK 490
R+ K
Sbjct: 495 RETYK 499
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 152/390 (38%), Gaps = 45/390 (11%)
Query: 118 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 172
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 173 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 231 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 287
G L +R G T D L + + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNAYGTTEAMNSLYMR 316
Query: 288 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 343
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 344 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTAP-GVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALD-TFCRS--SELAD 472
Query: 460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 489
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 45/390 (11%)
Query: 118 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 172
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 173 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 231 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 287
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNGYGTTEAMNSLYMR 316
Query: 288 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 343
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 344 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALD-TFCRS--SELAD 472
Query: 460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 489
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 350 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 405 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
A ++E+A I V A G E + FVVL + F P + +++ + +L
Sbjct: 420 -AMPGVVESAVIGVPHADFG-EGVTAFVVLXREFA--PSEAQVL--HGLDGQLAXFXMPX 473
Query: 465 LVKVVPEFPRTASNKLLRRVLRD 487
V V + PR + VLR+
Sbjct: 474 XVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 45/390 (11%)
Query: 118 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 172
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 173 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 231 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 287
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 288 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 343
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 344 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTA-PGVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALD-TFCRS--SELAD 472
Query: 460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 489
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 72/341 (21%), Positives = 129/341 (37%), Gaps = 27/341 (7%)
Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 187
D I+++SG+TG PK + T + T +L+ G V+ + + + +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDI 203
Query: 188 FSSFLNGATLALYQGSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 245
+ S + G TL + R F ++ + + V + PS + +
Sbjct: 204 YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNM 263
Query: 246 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST---- 301
++F GE + L + I+ + G TE + A + G + + + +
Sbjct: 264 KTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVA-VTGIHVTEEVLDQYKSLPVG 322
Query: 302 -ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
L+I+ E G PD + GE+ + +G S + E+ + M G
Sbjct: 323 YCKSDCRLLIMKEDGTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE---RVCDQADESILETAAIS 417
+ GD G + GR D + L G + EIE R C S +E A I
Sbjct: 377 RAYKTGD-AGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC-----SYVEGAVI- 429
Query: 418 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 458
P G + + V+ G S + K+ + AI+ +LN
Sbjct: 430 -VPIKKGEKYDYLLAVVVPGEHSFEKEFKL--TSAIKKELN 467
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 72/341 (21%), Positives = 129/341 (37%), Gaps = 27/341 (7%)
Query: 128 DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVIL 187
D I+++SG+TG PK + T + T +L+ G V+ + + + +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDI 203
Query: 188 FSSFLNGATLALYQGSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKI 245
+ S + G TL + R F ++ + + V + PS + +
Sbjct: 204 YPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNM 263
Query: 246 RSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFST---- 301
++F GE + L + I+ + G TE + A + G + + + +
Sbjct: 264 KTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVA-VTGIHVTEEVLDQYKSLPVG 322
Query: 302 -ATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGM 360
L+I+ E G PD + GE+ + +G S + E+ + M G
Sbjct: 323 YCKSDCRLLIMKEDGTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGE 376
Query: 361 CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE---RVCDQADESILETAAIS 417
+ GD G + GR D + L G + EIE R C S +E A I
Sbjct: 377 RAYKTGD-AGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRAC-----SYVEGAVI- 429
Query: 418 VSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 458
P G + + V+ G S + K+ + AI+ +LN
Sbjct: 430 -VPIKKGEKYDYLLAVVVPGEHSFEKEFKL--TSAIKKELN 467
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 57/143 (39%), Gaps = 9/143 (6%)
Query: 350 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 405 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
A ++E+A I V A G E + FVVL + F + L + +L
Sbjct: 420 -AMPGVVESAVIGVPHADFG-EGVTAFVVLXREFAPS-EILAEELXAFVXDRLAXFXMPX 476
Query: 465 LVKVVPEFPRTASNKLLRRVLRD 487
V V + PR + VLR+
Sbjct: 477 XVIFVDDLPRNTMGAVQXNVLRE 499
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 95/390 (24%), Positives = 151/390 (38%), Gaps = 45/390 (11%)
Query: 118 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 172
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 173 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 231 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 287
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 288 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 343
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 344 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
V + P L+ R D+ T G + + GR DD + GG EI
Sbjct: 363 -----VGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEI 417
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTAP-GVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALDT-FCRS--SELAD 472
Query: 460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 489
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 364 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGG 423
R D+ T G + + GR DD + GG EIERV A + E I ++
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAP-GVTEVVVIGLADQRW 440
Query: 424 GPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRR 483
G V VV + G T D L F ++ S+L + ++ + P+ A NK+LRR
Sbjct: 441 GQSVTAC-VVPRLGETLSADALDT-FCRS--SELADFKRPKRYFILDQLPKNALNKVLRR 496
Query: 484 VLRDQI 489
L Q+
Sbjct: 497 QLVQQV 502
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 94/390 (24%), Positives = 150/390 (38%), Gaps = 45/390 (11%)
Query: 118 NYYSPVYNPVDAVVN---ILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVG--DVY 172
+Y P+ +P I ++SGTTG PKA Q ++ + L+ G +V
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVV 199
Query: 173 CWPTNLGWVMG--PVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKA 230
L V+G V++ + L+G + + + P++ + VQ VT L P+ + A
Sbjct: 200 LGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--QLVQQEQVTSLFATPTHLDA 257
Query: 231 WRNTNCLEG--LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE-LSSAYIQ 287
G L +R G T D L + + G TE ++S Y++
Sbjct: 258 LAAAAAHAGSSLKLDSLRHVTFAGATMP-DAVLETVHQHLPGEKVNIYGTTEAMNSLYMR 316
Query: 288 ----GSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLN 343
G+ + P F + G+ D+ GE G L + ASD
Sbjct: 317 QPKTGTEMAPGFFSEVRIVRIGGGV-----------DEIVANGEEG--ELIVAASDSAF- 362
Query: 344 ADHEEVYFRGMPMYKGMCLR----RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399
V + P L+ R D+ T G + + GR D + GG EI
Sbjct: 363 -----VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEI 417
Query: 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNP 459
ERV A + E I ++ G V VV + G T D L F ++ S+L
Sbjct: 418 ERVLGTAP-GVTEVVVIGLADQRWGQSVTAC-VVPRLGETLSADALD-TFCRS--SELAD 472
Query: 460 LFKVSLVKVVPEFPRTASNKLLRRVLRDQI 489
+ ++ + P+ A NK+LRR L Q+
Sbjct: 473 FKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 351 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 410
F+G P Y GDI T ++ GR D + G + +E+E V Q ++S
Sbjct: 376 FKGQPAY------HTGDIGSLTEDNILLYGGRLDFQIKYAGYR---IELEDVSQQLNQSP 426
Query: 411 LETAAISVSPAGGGPEV--LVIFVVLKKGFTSQPDKLKMIFSKAIQSKLN 458
+ +A++V +V L+ ++V+K G + D+ ++ +KAI++ +
Sbjct: 427 MVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR-ELELTKAIKASVK 475
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 130 VVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFS 189
V ++F+SG+TG PK + + ++ T G + +V+ + + W + LF
Sbjct: 216 VACVMFTSGSTGRPKGV-MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFG 274
Query: 190 SFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSL 227
+ L GA L G PLE G+ V GVT+L SL
Sbjct: 275 ALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 3/144 (2%)
Query: 112 DYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDV 171
D P P +P D + ++++SGTTG PK +P + + A + D D
Sbjct: 160 DAEPGPVTGAPGPGAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR 218
Query: 172 YCWPTNLGWVMGPVILFSSFLNGATLAL--YQGSPLERSFGKFVQDAGVTVLGTVPSLVK 229
+ +L + ++ +F GA L + + + + + D GVTV+ P+
Sbjct: 219 WLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFL 278
Query: 230 AWRNTNCLEGLDWTKIRSFASTGE 253
A G D + +R GE
Sbjct: 279 ALTEAAVRGGRDVSGLRYVIFGGE 302
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 83/387 (21%), Positives = 149/387 (38%), Gaps = 51/387 (13%)
Query: 133 ILFSSGTTGEPKAIPWTQLSSIRCTA-EGWAHIDLKV--GDVYCWPTNLGWVMGPVILFS 189
I+++SG+TG PK + Q+S+ + W D V G ++ + + + L+
Sbjct: 148 IIYTSGSTGNPKGV---QISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204
Query: 190 SFLNGATLALYQGSPLERSFGKF--VQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTK--- 244
+G TL + + F ++ +G+ V + PS V+ CL +++
Sbjct: 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQM-----CLMDPGFSQDLL 259
Query: 245 --IRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTE----LSSAYIQGSLLQPQAFGA 298
+F GE V L + I + G TE ++S I ++
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319
Query: 299 FSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPL--------YLGASDRLLNADHEEVY 350
A + I+DE G P P+ GE G + YLG + E+ +
Sbjct: 320 VGFAKPDMNIFIMDEEGQPLPE-----GEKGEIVIAGPSVSRGYLGEPELT-----EKAF 369
Query: 351 FRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESI 410
F ++G R GD G I QGR D + L G + EIE Q+
Sbjct: 370 FS----HEGQWAYRTGD-AGFIQDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQ--Y 422
Query: 411 LETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470
+ +A + G E L+ +V ++ + +L K + + L P + + +
Sbjct: 423 VRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASL-PAYMIPRKFIYQ 481
Query: 471 EFPRTASNKLLRRVLRDQIKHELSVRS 497
+ + +N ++ R +I E+ VRS
Sbjct: 482 DHIQMTANG---KIDRKRIGEEVLVRS 505
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 350 YFRGMPMYKGMCLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCD 404
Y+R MP R G I +G GY+ + GR D + GG EIE D
Sbjct: 361 YWR-MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 405 QADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS 464
A ++E+A I V A G V + VV G T D+ +++ + +L
Sbjct: 420 -AMPGVVESAVIGVPHADFGEGVTAV-VVRDXGATI--DEAQVL--HGLDGQLAXFXMPX 473
Query: 465 LVKVVPEFPRTASNKLLRRVLRD 487
V V + PR + VLR+
Sbjct: 474 XVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIR-CTAEGWAHIDLKVGDVYCWPTNLGWVMGPV 185
D + I FSSGTTG PKAI T R C + + ++ + P L + +
Sbjct: 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSP--LSFDAATL 220
Query: 186 ILFSSFLNGATLALYQGSPLE 206
++ + LNG L PL+
Sbjct: 221 EIWGALLNGGCCVLNDLGPLD 241
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 127 VDAVVNILFSSGTTGEPKAIPWT 149
+D + +I+F+SGTTG KA+P T
Sbjct: 162 LDDIASIMFTSGTTGPQKAVPQT 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,771,774
Number of Sequences: 62578
Number of extensions: 649448
Number of successful extensions: 1336
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1222
Number of HSP's gapped (non-prelim): 75
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)