Query 010854
Match_columns 499
No_of_seqs 129 out of 2186
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 15:40:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 3.3E-70 1.1E-74 558.9 40.5 454 2-491 71-535 (536)
2 4fuq_A Malonyl COA synthetase; 100.0 1.7E-69 5.8E-74 549.1 42.4 450 2-493 50-502 (503)
3 1pg4_A Acetyl-COA synthetase; 100.0 4.4E-69 1.5E-73 561.6 44.3 475 2-493 129-623 (652)
4 2d1s_A Luciferase, luciferin 4 100.0 3.8E-69 1.3E-73 552.0 41.1 464 2-495 74-547 (548)
5 3etc_A AMP-binding protein; ad 100.0 7.5E-69 2.6E-73 552.3 42.8 462 2-492 108-580 (580)
6 3g7s_A Long-chain-fatty-acid-- 100.0 2.1E-69 7.2E-74 554.6 36.6 461 2-496 74-547 (549)
7 3e7w_A D-alanine--poly(phospho 100.0 1.4E-68 4.7E-73 544.0 42.0 453 2-496 49-508 (511)
8 3fce_A D-alanine--poly(phospho 100.0 2.7E-69 9.1E-74 549.7 35.0 456 2-497 48-510 (512)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 6.9E-69 2.3E-73 549.3 36.9 459 2-495 72-535 (539)
10 3r44_A Fatty acyl COA syntheta 100.0 5.4E-69 1.9E-73 547.2 34.0 450 2-494 65-516 (517)
11 1ry2_A Acetyl-coenzyme A synth 100.0 2.8E-68 9.5E-73 555.7 39.4 475 2-492 136-638 (663)
12 3rix_A Luciferase, luciferin 4 100.0 5.1E-69 1.7E-73 551.9 32.1 466 2-495 72-545 (550)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.8E-67 6.1E-72 535.0 42.2 440 2-490 51-503 (504)
14 1v25_A Long-chain-fatty-acid-C 100.0 6.4E-69 2.2E-73 549.7 31.4 458 2-495 69-540 (541)
15 3c5e_A Acyl-coenzyme A synthet 100.0 3.7E-67 1.3E-71 539.0 43.7 457 2-492 96-563 (570)
16 3o83_A Peptide arylation enzym 100.0 1.6E-68 5.4E-73 547.2 29.0 460 2-492 77-541 (544)
17 3l8c_A D-alanine--poly(phospho 100.0 9.6E-68 3.3E-72 539.7 34.7 457 2-498 51-519 (521)
18 2v7b_A Benzoate-coenzyme A lig 100.0 3.2E-66 1.1E-70 529.2 41.4 454 2-487 70-528 (529)
19 1amu_A GRSA, gramicidin synthe 100.0 1E-66 3.5E-71 534.9 37.4 437 2-489 86-527 (563)
20 4gr5_A Non-ribosomal peptide s 100.0 1.5E-67 5.1E-72 543.0 30.5 439 2-488 122-568 (570)
21 3ivr_A Putative long-chain-fat 100.0 3.2E-67 1.1E-71 534.0 29.7 451 2-496 53-506 (509)
22 3nyq_A Malonyl-COA ligase; A/B 100.0 3.4E-66 1.2E-70 524.8 35.2 430 2-487 65-504 (505)
23 3rg2_A Enterobactin synthase c 100.0 3.3E-65 1.1E-69 530.2 41.7 459 2-494 72-537 (617)
24 3tsy_A Fusion protein 4-coumar 100.0 2E-66 6.9E-71 566.4 32.8 466 2-495 110-586 (979)
25 4dg8_A PA1221; ANL superfamily 100.0 1.5E-65 5.2E-70 530.5 36.9 433 2-492 74-514 (620)
26 3ipl_A 2-succinylbenzoate--COA 100.0 7.5E-65 2.6E-69 515.8 36.6 450 4-492 47-498 (501)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.7E-63 5.9E-68 516.4 31.2 458 2-492 62-568 (590)
28 2vsq_A Surfactin synthetase su 100.0 5.4E-63 1.8E-67 552.3 36.3 443 2-490 511-959 (1304)
29 3ite_A SIDN siderophore synthe 100.0 1.2E-63 4E-68 514.0 26.6 447 4-492 78-544 (562)
30 3gqw_A Fatty acid AMP ligase; 100.0 2.9E-61 1E-65 498.6 35.9 447 2-496 71-568 (576)
31 4gs5_A Acyl-COA synthetase (AM 100.0 1.9E-53 6.5E-58 411.0 20.8 318 127-493 36-356 (358)
32 3qov_A Phenylacetate-coenzyme 100.0 4.6E-48 1.6E-52 385.3 24.6 326 124-484 81-430 (436)
33 3t5a_A Long-chain-fatty-acid-- 100.0 1.8E-47 6.2E-52 386.4 22.1 345 4-382 81-480 (480)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.6E-46 5.3E-51 375.1 22.7 327 125-485 89-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 2E-46 6.9E-51 373.6 23.2 326 124-484 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.6E-30 8.9E-35 251.4 16.6 238 124-392 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 1.8E-15 6E-20 118.5 7.6 96 381-482 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 3.4E-15 1.2E-19 116.6 8.3 96 381-483 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.9 3.4E-08 1.2E-12 98.7 15.9 162 224-417 277-477 (609)
40 4eql_A 4-substituted benzoates 98.8 3.6E-08 1.2E-12 98.4 14.9 134 242-407 296-448 (581)
41 4epl_A Jasmonic acid-amido syn 98.8 8.4E-08 2.9E-12 95.5 15.7 145 242-417 301-472 (581)
42 3ivr_A Putative long-chain-fat 84.6 4.5 0.00015 39.9 10.2 95 126-230 19-116 (509)
43 3rix_A Luciferase, luciferin 4 84.3 2 6.9E-05 43.0 7.5 85 147-232 50-137 (550)
44 1v25_A Long-chain-fatty-acid-C 84.1 7 0.00024 38.9 11.4 99 127-231 32-133 (541)
45 3g7s_A Long-chain-fatty-acid-- 83.0 5 0.00017 40.0 9.9 103 127-232 33-139 (549)
46 3c5e_A Acyl-coenzyme A synthet 82.2 9.2 0.00031 38.4 11.4 102 126-232 56-161 (570)
47 3ni2_A 4-coumarate:COA ligase; 80.3 4.5 0.00016 40.2 8.3 98 126-231 35-135 (536)
48 3t5a_A Long-chain-fatty-acid-- 78.5 9.6 0.00033 37.1 10.0 107 126-234 37-149 (480)
49 1t5h_X 4-chlorobenzoyl COA lig 77.5 8.9 0.0003 37.7 9.4 97 127-231 16-117 (504)
50 1ry2_A Acetyl-coenzyme A synth 76.3 6.9 0.00024 40.1 8.4 97 126-226 95-195 (663)
51 3r44_A Fatty acyl COA syntheta 76.0 9.5 0.00032 37.7 9.1 96 126-229 29-127 (517)
52 1amu_A GRSA, gramicidin synthe 75.7 11 0.00038 37.7 9.6 95 127-231 53-150 (563)
53 3etc_A AMP-binding protein; ad 74.4 10 0.00036 38.0 9.1 96 126-226 69-167 (580)
54 2d1s_A Luciferase, luciferin 4 71.9 8.2 0.00028 38.5 7.5 84 147-231 52-138 (548)
55 3ezx_A MMCP 1, monomethylamine 71.4 24 0.00081 30.1 9.3 87 171-259 94-191 (215)
56 1pg4_A Acetyl-COA synthetase; 70.5 9 0.00031 39.2 7.6 95 127-225 90-187 (652)
57 4gr5_A Non-ribosomal peptide s 69.5 16 0.00054 36.6 9.1 93 126-228 88-183 (570)
58 3kxw_A Saframycin MX1 syntheta 68.8 24 0.00081 35.4 10.3 102 126-233 24-131 (590)
59 4fuq_A Malonyl COA synthetase; 68.4 6.4 0.00022 38.8 5.8 80 147-227 28-110 (503)
60 3tsy_A Fusion protein 4-coumar 68.0 6.7 0.00023 42.4 6.2 96 126-229 74-172 (979)
61 2v7b_A Benzoate-coenzyme A lig 67.5 11 0.00037 37.3 7.3 96 126-231 36-134 (529)
62 3o83_A Peptide arylation enzym 67.1 16 0.00054 36.3 8.4 91 126-226 43-136 (544)
63 1mdb_A 2,3-dihydroxybenzoate-A 62.2 21 0.00071 35.4 8.2 89 127-225 39-130 (539)
64 3fce_A D-alanine--poly(phospho 59.5 20 0.0007 35.1 7.5 88 127-224 15-105 (512)
65 3ipl_A 2-succinylbenzoate--COA 59.3 17 0.00059 35.5 7.0 79 147-226 26-104 (501)
66 3l8c_A D-alanine--poly(phospho 58.8 21 0.00073 35.1 7.6 80 146-226 28-110 (521)
67 4dg8_A PA1221; ANL superfamily 55.2 39 0.0013 34.2 8.9 90 126-225 40-132 (620)
68 3ite_A SIDN siderophore synthe 54.7 52 0.0018 32.6 9.8 98 126-226 33-135 (562)
69 3gqw_A Fatty acid AMP ligase; 54.6 30 0.001 34.4 8.0 86 145-231 47-142 (576)
70 3qov_A Phenylacetate-coenzyme 54.0 17 0.00057 34.9 5.7 61 2-63 127-189 (436)
71 2y27_A Phenylacetate-coenzyme 53.2 26 0.00089 33.5 7.0 60 2-62 131-192 (437)
72 2y4o_A Phenylacetate-coenzyme 50.7 30 0.001 33.1 7.0 60 2-62 133-194 (443)
73 4h1h_A LMO1638 protein; MCCF-l 47.7 85 0.0029 28.6 9.1 58 2-59 9-85 (327)
74 3e7w_A D-alanine--poly(phospho 44.7 42 0.0014 32.8 7.1 78 146-224 25-106 (511)
75 3sr3_A Microcin immunity prote 44.2 1E+02 0.0036 28.2 9.1 58 2-59 10-86 (336)
76 3tla_A MCCF; serine protease, 42.4 1.1E+02 0.0038 28.5 9.0 58 2-59 40-116 (371)
77 3rg2_A Enterobactin synthase c 40.5 46 0.0016 33.5 6.7 90 127-226 39-131 (617)
78 4e5s_A MCCFLIKE protein (BA_56 39.5 1.1E+02 0.0036 28.1 8.3 58 2-59 9-85 (331)
79 3tbh_A O-acetyl serine sulfhyd 36.6 64 0.0022 29.6 6.4 59 2-60 68-126 (334)
80 3nyq_A Malonyl-COA ligase; A/B 36.3 49 0.0017 32.3 6.0 78 146-226 47-124 (505)
81 1eg5_A Aminotransferase; PLP-d 33.8 1.1E+02 0.0037 28.0 7.8 57 3-60 87-147 (384)
82 3vc3_A Beta-cyanoalnine syntha 31.0 89 0.003 28.7 6.4 59 2-60 83-141 (344)
83 3dzz_A Putative pyridoxal 5'-p 30.8 1.3E+02 0.0044 27.7 7.8 56 2-60 106-168 (391)
84 2i2x_B MTAC, methyltransferase 29.9 1.1E+02 0.0037 26.8 6.5 85 170-258 124-217 (258)
85 1yj7_A ESCJ; mixed alpha/beta, 29.9 1.2E+02 0.004 24.6 6.2 70 396-470 92-163 (171)
86 3ri6_A O-acetylhomoserine sulf 29.5 1.7E+02 0.0059 27.7 8.4 56 2-59 118-174 (430)
87 1zsy_A Mitochondrial 2-enoyl t 26.6 1.7E+02 0.006 26.7 7.7 57 2-59 165-223 (357)
88 3bul_A Methionine synthase; tr 26.3 2.4E+02 0.0081 28.1 8.8 85 171-259 100-193 (579)
89 3a2k_A TRNA(Ile)-lysidine synt 25.7 1.8E+02 0.0061 28.0 7.8 60 1-60 14-86 (464)
90 4hvk_A Probable cysteine desul 25.4 1.5E+02 0.0053 26.8 7.3 57 3-60 86-146 (382)
91 3a2b_A Serine palmitoyltransfe 24.6 2.2E+02 0.0076 26.2 8.2 55 2-60 124-181 (398)
92 2e7j_A SEP-tRNA:Cys-tRNA synth 24.5 2.5E+02 0.0085 25.4 8.5 56 2-60 90-155 (371)
93 2y9j_Y Lipoprotein PRGK, prote 24.5 2.3E+02 0.008 22.8 7.0 63 397-463 91-160 (170)
94 4eb5_A Probable cysteine desul 24.3 1.3E+02 0.0044 27.5 6.4 56 3-59 86-145 (382)
95 2vsq_A Surfactin synthetase su 23.4 1.2E+02 0.0042 33.7 7.0 81 147-228 489-572 (1304)
96 1ni5_A Putative cell cycle pro 23.0 1.7E+02 0.0059 27.8 7.0 59 2-60 10-81 (433)
97 1wy5_A TILS, hypothetical UPF0 22.4 2.4E+02 0.0081 25.4 7.6 60 1-60 20-92 (317)
98 3hgu_A EHPF; phenazine, antibi 22.3 2.1E+02 0.007 26.2 7.4 59 2-62 132-215 (369)
99 3n75_A LDC, lysine decarboxyla 22.2 2.2E+02 0.0076 29.2 8.0 57 2-61 232-307 (715)
100 2cvi_A 75AA long hypothetical 21.3 2E+02 0.0068 19.5 5.7 46 396-453 15-60 (83)
101 2z61_A Probable aspartate amin 21.0 2.1E+02 0.0073 25.9 7.2 52 2-59 110-161 (370)
102 1zl0_A Hypothetical protein PA 21.0 3.1E+02 0.011 24.6 7.9 58 2-59 14-87 (311)
103 1y80_A Predicted cobalamin bin 20.9 3.6E+02 0.012 22.3 9.5 86 171-258 90-184 (210)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=3.3e-70 Score=558.95 Aligned_cols=454 Identities=19% Similarity=0.228 Sum_probs=375.7
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+.........
T Consensus 71 v~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~ 144 (536)
T 3ni2_A 71 IQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDV 144 (536)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCc
Confidence 68999999999999999999999999999999999999999999999999999999987542 222222222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
..+.+.. ...+...+.++...... ........++++++++|||||||.||||+++|+++...+....
T Consensus 145 ~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~ 211 (536)
T 3ni2_A 145 KVMCVDS--------APDGCLHFSELTQADEN-----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQV 211 (536)
T ss_dssp EEEESSC--------CCTTCEETHHHHTSCGG-----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHH
T ss_pred eEEEecC--------CCCCccCHHHHhhcccc-----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHH
Confidence 2222211 11234456666543221 1223345689999999999999999999999999988766543
Q ss_pred e----eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854 162 A----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236 (499)
Q Consensus 162 ~----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~ 236 (499)
. .+++.++|++++.+|++|.+++.. ++.+++.|+++++.+ .+++..+++.++++++|++.++|+++..|++...
T Consensus 212 ~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 290 (536)
T 3ni2_A 212 DGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD 290 (536)
T ss_dssp CSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC
T ss_pred hhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc
Confidence 3 456889999999999999999865 889999999999987 5678999999999999999999999999999887
Q ss_pred CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCC----CCCCCccccccccCCCceEEEEC
Q 010854 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD 312 (499)
Q Consensus 237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~i~d 312 (499)
....+++++|.+++||+++++++.+.++..++++++++.||+||++.....+. .......+++|.|+++++++|+|
T Consensus 291 ~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d 370 (536)
T 3ni2_A 291 LDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVD 370 (536)
T ss_dssp GGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC
T ss_pred cccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEe
Confidence 77788999999999999999999999999988899999999999986654432 12234568899999999999999
Q ss_pred -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854 313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 390 (499)
Q Consensus 313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~ 390 (499)
++|++++.|+ .|||+| ++..+.+ ++.+++.+...| ++++||+|||+|++|++|+++++||.||+||++
T Consensus 371 ~~~~~~~~~g~--~GEl~v~g~~v~~G--Y~~~p~~t~~~~------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 440 (536)
T 3ni2_A 371 PETGASLPRNQ--PGEICIRGDQIMKG--YLNDPEATSRTI------DKEGWLHTGDIGYIDDDDELFIVDRLKELIKYK 440 (536)
T ss_dssp TTTCCBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEECSCCEEET
T ss_pred CCCCcCCCCCC--ccEEEEeCcccchh--hcCChhHHHhhc------cCCCceEcccEEEEcCCceEEEEecccceEEEC
Confidence 7899999999 599999 6655543 333444444444 356899999999999999999999999999999
Q ss_pred ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470 (499)
Q Consensus 391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~ 470 (499)
|++|+|.+||++|. .||+|.+++|++++++..+ +.++++|+..++...+.++++++ ++++|+.|+.|..+++++
T Consensus 441 G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~v~ 514 (536)
T 3ni2_A 441 GFQVAPAELEALLI-AHPEISDAAVVGLKDEDAG-EVPVAFVVKSEKSQATEDEIKQY----ISKQVIFYKRIKRVFFIE 514 (536)
T ss_dssp TEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HHTTSCGGGCCSEEEECS
T ss_pred CEEECHHHHHHHHH-hCCCcceEEEEeeecCCCC-ceeEEEEEecCCCCCCHHHHHHH----HHHhccCCccccEEEEEe
Confidence 99999999999996 9999999999999988888 99999999988766676666555 567899999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHh
Q 010854 471 EFPRTASNKLLRRVLRDQIKH 491 (499)
Q Consensus 471 ~iP~t~~GKv~r~~l~~~~~~ 491 (499)
+||+|++|||+|++|++++++
T Consensus 515 ~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 515 AIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp CCCBCTTSCBCHHHHHTC---
T ss_pred cCCCCCCCCeeHHHHHHHhcc
Confidence 999999999999999987753
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.7e-69 Score=549.06 Aligned_cols=450 Identities=20% Similarity=0.217 Sum_probs=372.1
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.........
T Consensus 50 v~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 123 (503)
T 4fuq_A 50 LQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGA 123 (503)
T ss_dssp CCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCc
Confidence 68999999999999999999999999999999999999999999999999999999988543 222222222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
....+.. . ....+.+...... .........++++++++|||||||.||||+++|+++.+.+....
T Consensus 124 ~~~~~~~--~--------~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 188 (503)
T 4fuq_A 124 TVETLGP--D--------GRGSLTDAAAGAS-----EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLV 188 (503)
T ss_dssp EEEECCT--T--------SCSHHHHHHHTSC-----SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHH
T ss_pred eEEEecC--C--------cccccchhhhcCC-----CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHH
Confidence 2222211 0 1112222222111 12223345689999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 240 (499)
..++++++|+++..+|++|.+++.. ++.+++.|+++++.+ .++++.+++.++ ++|++.++|+++..+++.......
T Consensus 189 ~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~ 265 (503)
T 4fuq_A 189 DYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKE 265 (503)
T ss_dssp HHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTT
T ss_pred HHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCcccc
Confidence 8889999999999999999999765 788999999999987 568889999998 899999999999999998877777
Q ss_pred cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCCCCCC
Q 010854 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYP 319 (499)
Q Consensus 241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~ 319 (499)
+++++|.+++||+++++++.+.+...+ ++.+++.||+||++.... .........+++|+|+|+++++|+| ++|++++
T Consensus 266 ~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~ 343 (503)
T 4fuq_A 266 TTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELP 343 (503)
T ss_dssp TTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCC
T ss_pred chhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCc
Confidence 789999999999999999999988776 788999999999987543 3333445568899999999999999 8999999
Q ss_pred CCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHH
Q 010854 320 DDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVE 398 (499)
Q Consensus 320 ~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~ 398 (499)
.|+ +|||+| ++..+.+ ++.+++.+...| +.++||+|||+|++|++|+++++||.||+||++|++|+|.|
T Consensus 344 ~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 413 (503)
T 4fuq_A 344 RGD--IGMIEVKGPNVFKG--YWRMPEKTKSEF------RDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKE 413 (503)
T ss_dssp TTC--CEEEEEESTTSCCC--BTTCHHHHHHTB------CTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHH
T ss_pred CCC--ceEEEEECCchhhh--hcCChhhhHhhh------CCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHH
Confidence 999 599999 6655543 334445454444 34679999999999999999999999999999999999999
Q ss_pred HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854 399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN 478 (499)
Q Consensus 399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G 478 (499)
||++|. .||+|.+++|++++++..+ +.++++|+..++...+.+++.++ ++++|+.|+.|..|+++++||+|++|
T Consensus 414 IE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~G 487 (503)
T 4fuq_A 414 IESEID-AMPGVVESAVIGVPHADFG-EGVTAVVVRDKGATIDEAQVLHG----LDGQLAKFKMPKKVIFVDDLPRNTMG 487 (503)
T ss_dssp HHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HBTTBCGGGCCSEEEEESCCCBCTTS
T ss_pred HHHHHH-hCCCeeEEEEEEeEchhcC-ceeEEEEEeCCCCCCCHHHHHHH----HHhhcccCCCCCEEEEECCCCCCccc
Confidence 999996 9999999999999988888 89999999988777776665555 66789999999999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 010854 479 KLLRRVLRDQIKHEL 493 (499)
Q Consensus 479 Kv~r~~l~~~~~~~~ 493 (499)
|++|++|++++++..
T Consensus 488 Ki~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 488 KVQKNVLRETYKDIY 502 (503)
T ss_dssp CBCHHHHHHHTTTTT
T ss_pred ceeHHHHHHHHHHhh
Confidence 999999999987653
No 3
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.4e-69 Score=561.59 Aligned_cols=475 Identities=25% Similarity=0.352 Sum_probs=376.8
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCcccc---chhhhhhc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFP---LYSKVLGA 78 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~ 78 (499)
|++||+|+|+++|++++++++|||+++|++++|+++.++++++.+++++++++++|+++......+..+ ........
T Consensus 129 v~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 208 (652)
T 1pg4_A 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN 208 (652)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTS
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhc
Confidence 789999999999999999999999999999999999999999999999999999999876533211111 11222222
Q ss_pred CC----CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854 79 AP----LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 154 (499)
Q Consensus 79 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~ 154 (499)
.+ ...+++......... .......|.+++..... ........++++++++|||||||.||||+++|++++
T Consensus 209 ~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~ 282 (652)
T 1pg4_A 209 PNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP-----EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYL 282 (652)
T ss_dssp TTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS-----CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHH
T ss_pred CCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC-----CCCccccCCCCCEEEEeccCCCCCCceEEECchHHH
Confidence 11 122222211111110 01123457777654321 122234567999999999999999999999999987
Q ss_pred HHhh-hcceeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHH
Q 010854 155 RCTA-EGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVK 229 (499)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~ 229 (499)
..+. .....++++++|++++..|++|.+++. .++.++++|+++++.+.. .++..+++.|+++++|+++++|++++
T Consensus 283 ~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~ 362 (652)
T 1pg4_A 283 VYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIR 362 (652)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHH
Confidence 7654 344457889999999999999999984 589999999999998752 46789999999999999999999999
Q ss_pred HHHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc--cCceeccccccceeeeeecCCCC-CCCccccccccCC
Q 010854 230 AWRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATM 304 (499)
Q Consensus 230 ~l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~ 304 (499)
.|++... ....++++||.++++||++++++.+++.+.+. .+.+++.||+||++..+...... .....+++|.|++
T Consensus 363 ~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~ 442 (652)
T 1pg4_A 363 ALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFF 442 (652)
T ss_dssp HHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCT
T ss_pred HHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcC
Confidence 9998754 34567899999999999999999999988763 27899999999998765544322 2446689999999
Q ss_pred CceEEEECCCCCCCCCCCCcceeeEe-c--ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEec
Q 010854 305 TAGLVILDECGVPYPDDQPCVGEVGL-F--PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQG 381 (499)
Q Consensus 305 ~~~~~i~d~~g~~~~~g~~~~Gei~v-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~g 381 (499)
|++++|+|++|++++.|+ .|||+| + +..+.+ ++.+++.+...|- ...++||+|||+|++|+||+|+++|
T Consensus 443 g~~v~i~d~~g~~v~~g~--~GEl~i~g~~p~~~~g--Y~~~~e~~~~~~~----~~~~g~y~TGDlg~~d~dG~l~i~G 514 (652)
T 1pg4_A 443 GVQPALVDNEGHPQEGAT--EGNLVITDSWPGQART--LFGDHERFEQTYF----STFKNMYFSGDGARRDEDGYYWITG 514 (652)
T ss_dssp TCCEEEECTTCCBCCSSE--EEEEEECSCCTTCCCE--ETTCHHHHHHHHH----SSSTTSEEEEEEEEECTTSCEEEEE
T ss_pred CCeEEEECCCCCCcCCCc--eEEEEEccCCCchhhh--hcCCHHHHHhhhh----hcCCCEEECCcEEEEcCCCcEEEEe
Confidence 999999999999999998 599999 4 233332 2223332222221 1235799999999999999999999
Q ss_pred ccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCce
Q 010854 382 RADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLF 461 (499)
Q Consensus 382 R~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~ 461 (499)
|.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+ +++.+.++++++++|+.|+
T Consensus 515 R~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~Vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~ 591 (652)
T 1pg4_A 515 RVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHGEEPS-PELYAEVRNWVRKEIGPLA 591 (652)
T ss_dssp ESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHTCGGG
T ss_pred cCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEEEEECCCCCCC-HHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999996 8999999999999988777 8999999998765433 3466678888889999999
Q ss_pred eeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854 462 KVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 493 (499)
Q Consensus 462 ~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~ 493 (499)
.|..|+++++||+|++|||+|++|++.+.+++
T Consensus 592 ~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 592 TPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp CCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred CCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 99999999999999999999999999998753
No 4
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.8e-69 Score=551.96 Aligned_cols=464 Identities=19% Similarity=0.172 Sum_probs=375.1
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP- 80 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~- 80 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.......+
T Consensus 74 v~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 147 (548)
T 2d1s_A 74 LVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTT 147 (548)
T ss_dssp CCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTT
T ss_pred CCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCC
Confidence 68999999999999999999999999999999999999999999999999999999987532 12222222222
Q ss_pred CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCC-CCCCCCC-CCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854 81 LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPN-YYSPVYN-PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 158 (499)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~ 158 (499)
...++.. .... ...+...+.++.........+. ...+... .++++++++|||||||.||||+++|+++...+.
T Consensus 148 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~ 222 (548)
T 2d1s_A 148 IKTIVIL-DSKV----DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFS 222 (548)
T ss_dssp CCEEEET-TCSS----CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHH
T ss_pred CCEEEEe-CCcc----cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHH
Confidence 1222221 1110 0112345667665432100000 0000011 238999999999999999999999999998887
Q ss_pred hccee---ccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854 159 EGWAH---IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 234 (499)
Q Consensus 159 ~~~~~---~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 234 (499)
..... ++++++|+++..+|++|.+++.. ++.++ .|+++++.+ .++++.+++.|+++++|+++++|+++..|.+.
T Consensus 223 ~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 300 (548)
T 2d1s_A 223 HARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKS 300 (548)
T ss_dssp HHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHC
T ss_pred HhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhC
Confidence 76665 67889999999999999999877 66677 999999987 56889999999999999999999999999987
Q ss_pred CCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-C
Q 010854 235 NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-E 313 (499)
Q Consensus 235 ~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~ 313 (499)
......+++++|.+++||+++++++.+.+...++++.+++.||+||++..+.... ......+++|+|+|+++++|+| +
T Consensus 301 ~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~ 379 (548)
T 2d1s_A 301 ELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLD 379 (548)
T ss_dssp SCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTT
T ss_pred cccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCC
Confidence 7666677899999999999999999999998887788999999999987655432 2334568999999999999999 8
Q ss_pred CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854 314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 392 (499)
Q Consensus 314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~ 392 (499)
+|++++.|+ .|||+| ++..+.+ ++.+++.+...| ..++||+|||+|++|++|+++++||.||+||++|+
T Consensus 380 ~~~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~ 449 (548)
T 2d1s_A 380 TKKSLGPNR--RGEVCVKGPMLMKG--YVNNPEATKELI------DEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGY 449 (548)
T ss_dssp TCCBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTC
T ss_pred cCccCCCCC--CeEEEECCHHHhhh--hcCChHHhhhcc------cCCcEEEccCEEEEcCCCeEEEeccccceEEECCE
Confidence 999999999 599999 5555443 333444444444 24679999999999999999999999999999999
Q ss_pred eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeee-EEEEcCC
Q 010854 393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVS-LVKVVPE 471 (499)
Q Consensus 393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~-~~~~~~~ 471 (499)
+|+|.+||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.++++++ ++++|+.|+.|. .++++++
T Consensus 450 ~v~p~eIE~~l~-~~p~V~~a~V~~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~p~~~i~~v~~ 523 (548)
T 2d1s_A 450 QVPPAELESVLL-QHPSIFDAGVAGVPDPVAG-ELPGAVVVLESGKNMTEKEVMDY----VASQVSNAKRLRGGVRFVDE 523 (548)
T ss_dssp CBCHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCCHHHHHHH----HHTTSCGGGSCTTCEEECSS
T ss_pred EECHHHHHHHHH-hCCCccEEEEEEEEcCCCC-eeeEEEEEEcCCCCCCHHHHHHH----HHHhccccccccccEEEccC
Confidence 999999999996 8999999999999988887 89999999987766666555555 667899999998 9999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhhhh
Q 010854 472 FPRTASNKLLRRVLRDQIKHELSV 495 (499)
Q Consensus 472 iP~t~~GKv~r~~l~~~~~~~~~~ 495 (499)
||+|++||++|++|++++++.+++
T Consensus 524 lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 524 VPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp CCBCTTSCBCHHHHHHHHHSCC--
T ss_pred CCCCCcchhHHHHHHHHHhhhhhc
Confidence 999999999999999999887653
No 5
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=7.5e-69 Score=552.31 Aligned_cols=462 Identities=19% Similarity=0.208 Sum_probs=356.5
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC-
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP- 80 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~- 80 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.+.. ....+.......+
T Consensus 108 v~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~ 183 (580)
T 3etc_A 108 IGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGD 183 (580)
T ss_dssp CCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCS
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCC
Confidence 78999999999999999999999999999999999999999999999999999999987421 0011222222222
Q ss_pred --CceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854 81 --LKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 158 (499)
Q Consensus 81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~ 158 (499)
...+.+. .. ...+..++.+.+...... ...........++|+++++|||||||.||+|+++|.++...+.
T Consensus 184 ~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~ 255 (580)
T 3etc_A 184 IPLKKAKVG--GD-----VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHIL 255 (580)
T ss_dssp CCCEEEEES--SS-----CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHH
T ss_pred cceEEEEeC--Cc-----cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHH
Confidence 2222221 11 123445666665543321 0011111346789999999999999999999999998888777
Q ss_pred hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854 159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236 (499)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~ 236 (499)
.....+++.++++++...|++|..+.+. ++.++..|+++++.+ ..++++.+++.|+++++|+++++|++++.|++. .
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~ 334 (580)
T 3etc_A 256 TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-D 334 (580)
T ss_dssp HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-C
T ss_pred HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-c
Confidence 6666678899999999999999988876 888999999998874 466889999999999999999999999999886 3
Q ss_pred CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCC
Q 010854 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGV 316 (499)
Q Consensus 237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~ 316 (499)
....++++||.++++||++++++.+++.+.+ ++++++.||+||++..+.... ......+++|+|+|+++++|+|++|+
T Consensus 335 ~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~ 412 (580)
T 3etc_A 335 LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGR 412 (580)
T ss_dssp C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSC
T ss_pred cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCC
Confidence 4456789999999999999999999998765 789999999999986554433 33456789999999999999999999
Q ss_pred CCCCCCCcceeeEec------ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854 317 PYPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 390 (499)
Q Consensus 317 ~~~~g~~~~Gei~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~ 390 (499)
+++.|+ .|||+|+ +..+. .++.+++.+...|. ++||+|||+|++|+||+|+++||.||+||++
T Consensus 413 ~~~~g~--~GEl~v~~~~g~~~~~~~--gY~~~p~~t~~~f~-------~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~ 481 (580)
T 3etc_A 413 LCEVGE--EGEIVINTMEGKPVGLFV--HYGKDPERTEETWH-------DGYYHTGDMAWMDEDGYLWFVGRADDIIKTS 481 (580)
T ss_dssp BCCTTC--CEEEEEECTTCCCTTCCC--EETTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEESSSCEEET
T ss_pred CCCCCC--ceEEEEecCCCCCCeeec--cccCCHhHHHhhcC-------CCEEecCcEEEECCCCcEEEEecCCCEEEEC
Confidence 999999 5999994 22332 24445555555553 4799999999999999999999999999999
Q ss_pred ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470 (499)
Q Consensus 391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~ 470 (499)
|++|+|.|||++|. .||+|.+++|++++++..+ +.++++|++.++...+ +++.+.+++++++.|+.|+.|+.+++++
T Consensus 482 G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~ 558 (580)
T 3etc_A 482 GYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYTPS-DSLKNELQDHVKNVTAPYKYPRIIEFVP 558 (580)
T ss_dssp TEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCCCC-HHHHHHHHHHHHHHSCGGGCCSEEEEEC
T ss_pred CEEECHHHHHHHHH-hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCCCC-HHHHHHHHHHHHhhCCCccCCeEEEEeC
Confidence 99999999999996 8999999999999998888 9999999998876533 4566678888889999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhh
Q 010854 471 EFPRTASNKLLRRVLRDQIKHE 492 (499)
Q Consensus 471 ~iP~t~~GKv~r~~l~~~~~~~ 492 (499)
+||+|++|||+|++|+++++++
T Consensus 559 ~lP~t~sGKi~R~~Lr~~~~~q 580 (580)
T 3etc_A 559 ELPKTISGKIRRVEIRDKDQSQ 580 (580)
T ss_dssp C---------------------
T ss_pred CCCCCCCcCCcHHHHHhHhhcC
Confidence 9999999999999999988753
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.1e-69 Score=554.64 Aligned_cols=461 Identities=18% Similarity=0.180 Sum_probs=338.3
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..+.........
T Consensus 74 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~ 147 (549)
T 3g7s_A 74 VRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGV 147 (549)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCC
Confidence 68999999999999999999999999999999999999999999999999999999988542 222233333332
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCC-CCCeEEEEecCCCCCCCceEEecchhhHHHhhhc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNP-VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEG 160 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~ 160 (499)
..++... ....++.++...... ........ ++++++++|||||||.||||+++|+++...+...
T Consensus 148 ~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~ 212 (549)
T 3g7s_A 148 ERVFVVG----------GEVNSLSEVMDSGSE-----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQL 212 (549)
T ss_dssp CEEEEET----------CSSSCHHHHHHHSCS-----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHH
T ss_pred cEEEEeC----------CCCcCHHHHHhcCcc-----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHH
Confidence 2222221 134466776654432 11122223 3899999999999999999999999999999888
Q ss_pred ceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc-
Q 010854 161 WAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG- 239 (499)
Q Consensus 161 ~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~- 239 (499)
...+++.++|+++..+|++|.+++..++.++..|+++++.+ .++++.+++.|+++++|+++++|+++..|++......
T Consensus 213 ~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 291 (549)
T 3g7s_A 213 AVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK 291 (549)
T ss_dssp HHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC
T ss_pred HHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc
Confidence 88889999999999999999999888888999999999987 5688999999999999999999999999987654333
Q ss_pred -ccccceeEEEeecCCCChhhHHHHHhh----cc--cCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC
Q 010854 240 -LDWTKIRSFASTGETSNVDDDLWLSSK----AW--YNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD 312 (499)
Q Consensus 240 -~~l~~l~~i~~~G~~l~~~~~~~~~~~----~~--~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d 312 (499)
.+++++|.+++||+++++++.+.+... +. ..++++.||+||++..+............++|.|+++++++|+|
T Consensus 292 ~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 371 (549)
T 3g7s_A 292 TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVIS 371 (549)
T ss_dssp CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEEC
T ss_pred cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEe
Confidence 678899999999999999999888766 32 27899999999999877766655556678999999999999999
Q ss_pred -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854 313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 390 (499)
Q Consensus 313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~ 390 (499)
++|++++.|+ .|||+| ++..+.+ ++.+++.+...|... .++.+||+|||+|++|++|+|+++||.||+||++
T Consensus 372 ~~~g~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~--~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 445 (549)
T 3g7s_A 372 LEDGRELGVGE--SGEIVIRGPNIFKG--YWKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYK 445 (549)
T ss_dssp SSSCCEECTTC--CEEEEEESTTSCSE--ETTCTTGGGTSEEEC--TTCCEEEEEEEEEEECTTSCEEEEEEC-------
T ss_pred CCCCcCCCCCC--ceEEEEECcchhhh--hCCChhhhhhhhhcc--CCCCceEccCcEEEEcCCceEEEeccccceEEEC
Confidence 9999999999 599999 6555543 333444444444211 1345699999999999999999999999999999
Q ss_pred ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCC--CCCCHHHHHHHHHHHHHhhcCCceeeeEEEE
Q 010854 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG--FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKV 468 (499)
Q Consensus 391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~ 468 (499)
|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++ ...+.++++++ ++++|+.|+.|..+++
T Consensus 446 G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~ 519 (549)
T 3g7s_A 446 GYTIAPFELEALLM-KHEAVMDVAVIGKPDEEAG-EVPKAFIVLKPEYRGKVDEEDIIEW----VRERISGYKRVREVEF 519 (549)
T ss_dssp -----CHHHHHHHT-TSTTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHH----HHTTCC-----CCCCE
T ss_pred CEEECHHHHHHHHH-hCCCeeeEEEEeeEccccC-ceEEEEEEECCCccCcCCHHHHHHH----HHHhccCcccceEEEE
Confidence 99999999999996 9999999999999988888 899999999876 34455555554 6678999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHhhhhhc
Q 010854 469 VPEFPRTASNKLLRRVLRDQIKHELSVR 496 (499)
Q Consensus 469 ~~~iP~t~~GKv~r~~l~~~~~~~~~~~ 496 (499)
+++||+|++|||+|++|++++.++-.++
T Consensus 520 v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 520 VEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp EEECC-----------------------
T ss_pred eccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 9999999999999999999988765544
No 7
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-68 Score=544.05 Aligned_cols=453 Identities=19% Similarity=0.178 Sum_probs=380.5
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.... ...
T Consensus 49 ~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-----~~~--------- 114 (511)
T 3e7w_A 49 GEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSI-----DAV--------- 114 (511)
T ss_dssp SSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCT-----TCC---------
T ss_pred CCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccc-----hhc---------
Confidence 457899999999999999999999999999999999999999999999999999999663210 000
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
.......++.++...... .........++++++++|||||||.||+|+++|+++...+.+..
T Consensus 115 --------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 176 (511)
T 3e7w_A 115 --------------GQQIQTVSAEELLENEGG----SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC 176 (511)
T ss_dssp --------------CCSSCEEEHHHHHTSCSC----CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH
T ss_pred --------------ccccceecHhhhhccccC----CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH
Confidence 000112334444433221 11122335678999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
..+++.++|+++..+|++|.+++..++.+++.|+++++.+.. .++..+++.++++++|++.++|+++..++.......
T Consensus 177 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 256 (511)
T 3e7w_A 177 ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ 256 (511)
T ss_dssp HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCST
T ss_pred HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccc
Confidence 888999999999999999999988899999999999998642 467889999999999999999999999998877777
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG 315 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g 315 (499)
..++++|.++++|+++++++.+.+.+.++++++++.||+||++..+...... ......++|.|.|+++++|+|++|
T Consensus 257 ~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g 336 (511)
T 3e7w_A 257 DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEG 336 (511)
T ss_dssp TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTS
T ss_pred ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCC
Confidence 7789999999999999999999999998889999999999998655433221 223456799999999999999999
Q ss_pred CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854 316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 394 (499)
Q Consensus 316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v 394 (499)
++++.|+ +|||+| ++..+.+ ++.+++.+...|.. ..+.+||+|||+|++ +||+|+++||.||+||++|++|
T Consensus 337 ~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~---~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v 408 (511)
T 3e7w_A 337 QPLPEGE--KGEIVIAGPSVSRG--YLGEPELTEKAFFS---HEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRM 408 (511)
T ss_dssp CBCCTTC--CEEEEEESTTSCCC--BTTCHHHHHHHEEE---SSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEE
T ss_pred CCCCCCC--ceEEEEecCccChh--hCCCcccchhhhcC---CCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEe
Confidence 9999999 599999 6655543 33444544444432 135668999999999 5999999999999999999999
Q ss_pred chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR 474 (499)
Q Consensus 395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~ 474 (499)
+|.+||++|. .||+|.+++|++++++..+ +.++++|++.++...+..++.+.++++++++|+.|+.|..++++++||+
T Consensus 409 ~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~ 486 (511)
T 3e7w_A 409 ELEEIEFHVR-QSQYVRSAVVIPYQPNGTV-EYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQM 486 (511)
T ss_dssp EHHHHHHHHH-HSTTEEEEEEEEECSSSSC-CEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCB
T ss_pred CHHHHHHHHH-hCCCcceEEEEEEcCCCCc-eEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCC
Confidence 9999999996 8999999999999988777 8999999998876666667788888999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhhhc
Q 010854 475 TASNKLLRRVLRDQIKHELSVR 496 (499)
Q Consensus 475 t~~GKv~r~~l~~~~~~~~~~~ 496 (499)
|++|||+|++|++++.++-...
T Consensus 487 t~~GKi~R~~L~~~~~~~~~~~ 508 (511)
T 3e7w_A 487 TANGKIDRKRIGEEVLVRSHHH 508 (511)
T ss_dssp CTTSCBCHHHHHHHHHHHHTCC
T ss_pred CCCcCccHHHHHhHHhhhcccc
Confidence 9999999999999998865443
No 8
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.7e-69 Score=549.72 Aligned_cols=456 Identities=18% Similarity=0.168 Sum_probs=373.8
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++..... .. . .
T Consensus 48 ~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~-----~~-------~-~ 114 (512)
T 3fce_A 48 PDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV-----TD-------L-P 114 (512)
T ss_dssp TTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS-----SC-------C-S
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc-----cc-------c-c
Confidence 689999999999999999999999999999999999999999999999999999999754210 00 0 0
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
... . ....+.++...... ..........++++++++|||||||.||+|+++|+++.+.+.+..
T Consensus 115 ~~~-~-------------~~~~~~~~~~~~~~---~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~ 177 (512)
T 3fce_A 115 VRI-V-------------SEDNLKDIFFTHKG---NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV 177 (512)
T ss_dssp SEE-E-------------ETHHHHHHHHHTTT---CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH
T ss_pred cce-e-------------chhhhhhhcccccc---cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH
Confidence 000 0 00112222211111 111122345679999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
..++++++|++++.+|++|.+++..++.+++.|+++++.+.. .++..+++.++++++|++.++|+++..++.......
T Consensus 178 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 257 (512)
T 3fce_A 178 EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSE 257 (512)
T ss_dssp HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCST
T ss_pred HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccc
Confidence 888999999999999999999998899999999999998742 467899999999999999999999999998877777
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECCCC
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDECG 315 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~~g 315 (499)
.+++++|.++++|+++++++.+.+.+.++++.+++.||+||++..+...... ......++|.|.++++++|+|++|
T Consensus 258 ~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g 337 (512)
T 3fce_A 258 SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDG 337 (512)
T ss_dssp TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSS
T ss_pred hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCC
Confidence 7889999999999999999999999998889999999999998765433222 122456899999999999999999
Q ss_pred CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854 316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 394 (499)
Q Consensus 316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v 394 (499)
++++.|+ .|||+| ++..+.+ ++.+++.+...|. ..++++||+|||+|++ ++|++++.||.||+||++|++|
T Consensus 338 ~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~---~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v 409 (512)
T 3fce_A 338 TIAPDGE--KGEIVIVGPSVSVG--YLGSPELTEKAFT---MIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRM 409 (512)
T ss_dssp CBCCTTS--CEEEEEESTTSCSC--BTTCHHHHHHHEE---EETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEE
T ss_pred CCCCCCC--eEEEEEeccccChh--hcCCchhhhhccc---cCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEE
Confidence 9999999 599999 6655543 3344444444442 1356789999999999 7999999999999999999999
Q ss_pred chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCC
Q 010854 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPR 474 (499)
Q Consensus 395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~ 474 (499)
+|.+||++|. .||+|.+++|+++++...+ +.++++|++.++...+..++.+.++++++++|+.|+.|+.++++++||+
T Consensus 410 ~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~ 487 (512)
T 3fce_A 410 ELEEIEHHLR-ACSYVEGAVIVPIKKGEKY-DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPM 487 (512)
T ss_dssp CHHHHHHHHH-HSTTEEEEEEEEEEETTEE-EEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCB
T ss_pred CHHHHHHHHH-hCCCcceEEEEEEecCCCc-eEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCC
Confidence 9999999996 8999999999999887777 8899999998766556667778899999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhhhcc
Q 010854 475 TASNKLLRRVLRDQIKHELSVRS 497 (499)
Q Consensus 475 t~~GKv~r~~l~~~~~~~~~~~~ 497 (499)
|++||++|++|++.++++-...+
T Consensus 488 t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 488 TPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp CTTSSBCHHHHHHHHHC------
T ss_pred CCCcChHHHHHHhhhhhcccccc
Confidence 99999999999999988776554
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=6.9e-69 Score=549.27 Aligned_cols=459 Identities=19% Similarity=0.198 Sum_probs=367.5
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++.... ..............+.
T Consensus 72 v~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~ 150 (539)
T 1mdb_A 72 IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPT 150 (539)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTT
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999999999999999875310 0000111122222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...++..... ..+.++...... ........++++++++|||||||.||||+++|+++.+.+....
T Consensus 151 ~~~~~~~~~~----------~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~ 215 (539)
T 1mdb_A 151 LKNIIVAGEA----------EEFLPLEDLHTE-----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSV 215 (539)
T ss_dssp CCCEEEESCC----------TTSEEGGGCCCC-----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHH
T ss_pred ccEEEEcCCc----------cchhhhhhcccc-----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHH
Confidence 1111111100 012222211111 1112345679999999999999999999999999999888887
Q ss_pred eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
..++++++|++++.+|++|.+++.. ++.+++.|+++++.+ .++++.+++.|+++++|++.++|+++..|++......
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 294 (539)
T 1mdb_A 216 EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR 294 (539)
T ss_dssp HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC
T ss_pred HhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC
Confidence 7788999999999999999999864 889999999999987 4678999999999999999999999999988765556
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCC-ceEEEECCCCCCC
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMT-AGLVILDECGVPY 318 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~i~d~~g~~~ 318 (499)
.+++++|.+++||+++++++.+++.+.+ ++.+++.||+||++..+...........+++|+|+++ .+++|+|++|+++
T Consensus 295 ~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~ 373 (539)
T 1mdb_A 295 DDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDV 373 (539)
T ss_dssp CCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBC
T ss_pred CCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCC
Confidence 6789999999999999999999888776 7899999999997644332221112345789999976 5899999999999
Q ss_pred CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854 319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 397 (499)
Q Consensus 319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~ 397 (499)
+.|+ +|||+| ++..+.+ ++.+++.+...|. .++||+|||+|++|++|+|+++||.||+||++|++|+|.
T Consensus 374 ~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~------~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 443 (539)
T 1mdb_A 374 KPGE--TGHLLTRGPYTIRG--YYKAEEHNAASFT------EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAE 443 (539)
T ss_dssp CTTC--CEEEEEECTTSCSS--CTTCHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHH
T ss_pred cCCC--cceEEeeCcccchh--hcCChhhhhhhcc------CCCCeecCceEEECCCCcEEEeccccceEEECCEEECHH
Confidence 9999 599999 6655543 3334444444442 357999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhh-cCCceeeeEEEEcCCCCCCC
Q 010854 398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSK-LNPLFKVSLVKVVPEFPRTA 476 (499)
Q Consensus 398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~-l~~~~~p~~~~~~~~iP~t~ 476 (499)
|||++|. .||+|.+++|++.+++..+ +.++++|++.+ ...+.+++.++ ++++ |+.|+.|..++++++||+|+
T Consensus 444 eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~l~~~----l~~~~L~~~~~P~~i~~v~~lP~t~ 516 (539)
T 1mdb_A 444 EVENHLL-AHPAVHDAAMVSMPDQFLG-ERSCVFIIPRD-EAPKAAELKAF----LRERGLAAYKIPDRVEFVESFPQTG 516 (539)
T ss_dssp HHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS-SCCCHHHHHHH----HHHTTCCGGGSCSEEEECSSCCBCT
T ss_pred HHHHHHH-hCCCcceEEEEeccccccC-ceEEEEEEECC-CCCCHHHHHHH----HHhCCCCcccCCCEEEEeccCCCCC
Confidence 9999996 9999999999999988777 89999999874 34455566555 4455 99999999999999999999
Q ss_pred CcHHHHHHHHHHHHhhhhh
Q 010854 477 SNKLLRRVLRDQIKHELSV 495 (499)
Q Consensus 477 ~GKv~r~~l~~~~~~~~~~ 495 (499)
+||++|++|++++.+++++
T Consensus 517 ~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 517 VGKVSKKALREAISEKLLA 535 (539)
T ss_dssp TSCBCHHHHHHHHHHHHHT
T ss_pred CcCEeHHHHHHHHHHHHhc
Confidence 9999999999999988765
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=5.4e-69 Score=547.22 Aligned_cols=450 Identities=22% Similarity=0.210 Sum_probs=365.1
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... +...........
T Consensus 65 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 138 (517)
T 3r44_A 65 IAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADP 138 (517)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSC
T ss_pred CCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCC
Confidence 68999999999999999999999999999999999999999999999999999999987532 122222211111
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...++.. .....+.+....... ........++++++++|||||||.||||+++|+++.+.+....
T Consensus 139 ~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 203 (517)
T 3r44_A 139 PGTVTDW----------IGADSLAERLRSAAA-----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA 203 (517)
T ss_dssp CTTCCEE----------EEHHHHHHHHHHCCC-----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHH
T ss_pred ccEEEEc----------cCcccHHHHhhccCc-----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHH
Confidence 0000000 001123333332221 1223345689999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 241 (499)
..++++++|++++.+|++|.+++...+.+++.|+++++.+ .+++..+++.++++++|++.++|+++..|.+.......+
T Consensus 204 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 282 (517)
T 3r44_A 204 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD 282 (517)
T ss_dssp HHSCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC
T ss_pred HhcCCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC
Confidence 8889999999999999999999987555555999999987 568899999999999999999999999998876666677
Q ss_pred ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCCCC
Q 010854 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPD 320 (499)
Q Consensus 242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~~~ 320 (499)
++++|.+++||+++++++.+.+... ++++++.||+||++...+..... .....+++|.|.++++++++|++|.+++.
T Consensus 283 ~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 360 (517)
T 3r44_A 283 APDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREH 360 (517)
T ss_dssp CTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESS
T ss_pred CCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCC
Confidence 8999999999999999999988765 78999999999997655443332 24566899999999999999999999988
Q ss_pred CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHH
Q 010854 321 DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEI 399 (499)
Q Consensus 321 g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~i 399 (499)
|. |||+| ++..+.+ ++.+++.+...| .++||+|||+|++|++|+|+++||.||+||++|++|+|.||
T Consensus 361 g~---GEl~v~g~~v~~G--Y~~~p~~t~~~f-------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eI 428 (517)
T 3r44_A 361 GE---GEVVIKSDILLKE--YWNRPEATRDAF-------DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEI 428 (517)
T ss_dssp EE---EEEEEEETTSCSE--ETTCHHHHHHTE-------ETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHH
T ss_pred CC---eEEEEeCcchhhh--hCCChhhhHhhh-------cCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHH
Confidence 83 99999 6555543 334455554445 25799999999999999999999999999999999999999
Q ss_pred HHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcH
Q 010854 400 ERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNK 479 (499)
Q Consensus 400 E~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GK 479 (499)
|++|. .||+|.+++|++.+++..+ +.++++| ..++...+.++++++ ++++|+.|+.|..++++++||+|++||
T Consensus 429 E~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~v-~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~GK 501 (517)
T 3r44_A 429 ESVII-GVPGVSEVAVIGLPDEKWG-EIAAAIV-VADQNEVSEQQIVEY----CGTRLARYKLPKKVIFAEAIPRNPTGK 501 (517)
T ss_dssp HHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEE-EECTTTCCHHHHHHH----HHHHSCGGGSCSEEEECSCCCBCTTCC
T ss_pred HHHHH-hCCCEeEEEEEeccccccC-ceEEEEE-ECCCCCCCHHHHHHH----HHHhCCCCCCCCEEEEECCCCCCCCcC
Confidence 99996 9999999999999988887 8888888 555555566666555 557899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 010854 480 LLRRVLRDQIKHELS 494 (499)
Q Consensus 480 v~r~~l~~~~~~~~~ 494 (499)
++|++|+++|.+++.
T Consensus 502 i~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 502 ILKTVLREQYSATVP 516 (517)
T ss_dssp BCHHHHHHHHGGGCC
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999987753
No 11
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=2.8e-68 Score=555.66 Aligned_cols=475 Identities=23% Similarity=0.358 Sum_probs=371.2
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccc---hhhhhhc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPL---YSKVLGA 78 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~ 78 (499)
|++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++...+..+..+. +......
T Consensus 136 v~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 215 (663)
T 1ry2_A 136 VRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE 215 (663)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTS
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999998865332222111 1222222
Q ss_pred CCC--ceEEecccCC-CCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH
Q 010854 79 APL--KAIVLPAIGN-DVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR 155 (499)
Q Consensus 79 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~ 155 (499)
.+. ..+++..... .... .......|.++...... ........++++++|+|||||||.||||+++|.++..
T Consensus 216 ~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~ 289 (663)
T 1ry2_A 216 TPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYKT-----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLL 289 (663)
T ss_dssp CTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSCS-----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHH
T ss_pred CCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcCC-----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHH
Confidence 222 2222221111 1110 01123456776653221 1223345679999999999999999999999999876
Q ss_pred Hhh-hcceeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHHH
Q 010854 156 CTA-EGWAHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVKA 230 (499)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~ 230 (499)
.+. .....++++++|++++..|++|..++. .++.+++.|+++++.+.. .++..+++.|+++++|+++++|++++.
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~ 369 (663)
T 1ry2_A 290 GALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRL 369 (663)
T ss_dssp HHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 654 334457889999999999999999984 488999999999998752 467899999999999999999999999
Q ss_pred HHccCC--CCcccccceeEEEeecCCCChhhHHHHHhhcc--cCceeccccccceeeeeecCCC--CCCCccccccccCC
Q 010854 231 WRNTNC--LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW--YNAIIESCGGTELSSAYIQGSL--LQPQAFGAFSTATM 304 (499)
Q Consensus 231 l~~~~~--~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~i~~~yg~tE~~~~~~~~~~--~~~~~~~~~g~~~~ 304 (499)
|++... ....++++||.++++||++++++.+++.+.+. .+.+++.||+||++..+..... ......+++|.|++
T Consensus 370 l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~ 449 (663)
T 1ry2_A 370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFF 449 (663)
T ss_dssp HTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECT
T ss_pred HHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcC
Confidence 988764 34567899999999999999999999988763 2789999999999866554432 23456789999999
Q ss_pred CceEEEECC-CCCCCCC-CCCcceeeEe-cc--cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEE
Q 010854 305 TAGLVILDE-CGVPYPD-DQPCVGEVGL-FP--LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIV 379 (499)
Q Consensus 305 ~~~~~i~d~-~g~~~~~-g~~~~Gei~v-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~ 379 (499)
|++++|+|+ +|++++. |+ .|||++ ++ ..+.+ ++.+++.+...|. .+.++||+|||+|++|+||+|++
T Consensus 450 g~~v~i~d~~~g~~v~~~g~--~Gel~i~g~~p~~~~g--y~~~~~~~~~~~~----~~~~g~y~TGDlg~~d~dG~l~i 521 (663)
T 1ry2_A 450 GIDAVVLDPNTGEELNTSHA--EGVLAVKAAWPSFART--IWKNHDRYLDTYL----NPYPGYYFTGDGAAKDKDGYIWI 521 (663)
T ss_dssp TCCEEEECSSSTTCEECSSC--EEEEEESSCCTTSCCE--ETTCHHHHHHHHT----SSSTTSEEEEEEEEECTTCCEEE
T ss_pred CCeEEEEcCCCCCcCCCCCc--ceEEEEecCCCchhcc--cccChHHHHHhhh----cCCCCEEEcCCEEEEcCCCCEEE
Confidence 999999997 9999988 77 599999 42 33332 2333333222221 12357999999999999999999
Q ss_pred ecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC---CCHH---HHHHHHHHHH
Q 010854 380 QGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT---SQPD---KLKMIFSKAI 453 (499)
Q Consensus 380 ~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~---~~~~---~l~~~~~~~~ 453 (499)
+||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|+++++.. ...+ ++.+.+++++
T Consensus 522 ~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l 599 (663)
T 1ry2_A 522 LGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTV 599 (663)
T ss_dssp CSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCCTTS-CCCEEEEEEC------------CCSHHHHHHHHH
T ss_pred EeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHH
Confidence 9999999999999999999999996 9999999999999988777 88999999987643 2112 4667788888
Q ss_pred HhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854 454 QSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492 (499)
Q Consensus 454 ~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~ 492 (499)
+++|++|+.|..|+++++||+|++||++|++|++++.++
T Consensus 600 ~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 600 RKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp HHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred HHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 899999999999999999999999999999999988765
No 12
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.1e-69 Score=551.90 Aligned_cols=466 Identities=17% Similarity=0.184 Sum_probs=279.5
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.......+.
T Consensus 72 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 145 (550)
T 3rix_A 72 LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPI 145 (550)
T ss_dssp CCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTT
T ss_pred CCCCCEEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCC
Confidence 68999999999999999999999999999999999999999999999999999999988532 222233333332
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCC--CCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRP--NYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 159 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~ 159 (499)
...++...... ......++.++.......... .........++++++++|||||||.||||+++|+++...+..
T Consensus 146 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~ 221 (550)
T 3rix_A 146 IQKIIIMDSKT----DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSH 221 (550)
T ss_dssp CCEEEETTCSS----CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred cceEEEEcCCc----cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHH
Confidence 22222221111 123445666666543321110 111112234588999999999999999999999999888776
Q ss_pred ccee---ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854 160 GWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236 (499)
Q Consensus 160 ~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~ 236 (499)
.... +++.+++++++.+|++|.+++..++.+++.|+++++.+ .++++.+++.|+++++|++.++|+++..|++...
T Consensus 222 ~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 300 (550)
T 3rix_A 222 ARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL 300 (550)
T ss_dssp HTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG
T ss_pred hhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc
Confidence 6554 57889999999999999999988889999999999986 5678999999999999999999999999999887
Q ss_pred CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CCC
Q 010854 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-ECG 315 (499)
Q Consensus 237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g 315 (499)
..+.+++++|.+++||+++++++.+++.+.++...+++.||+||++..+..... .....+++|+|+|+++++|+| ++|
T Consensus 301 ~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~ 379 (550)
T 3rix_A 301 IDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTG 379 (550)
T ss_dssp GGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTC
T ss_pred ccccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCC
Confidence 777889999999999999999999999988754569999999999876655443 345668999999999999999 789
Q ss_pred CCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854 316 VPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 394 (499)
Q Consensus 316 ~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v 394 (499)
++++.|+ .|||+| ++..+.+ ++.+++.+...| +.++||+|||+|++|++|+++++||.||+||++|++|
T Consensus 380 ~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~~------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v 449 (550)
T 3rix_A 380 KTLGVNQ--RGELCVRGPMIMSG--YVNNPEATNALI------DKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQV 449 (550)
T ss_dssp CBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTCCEEEC--------------
T ss_pred cCCCCCC--CeEEEEeCCCcchh--hcCChhhhhhhc------CCCCCeecCcEEEEeCCceEEEEecchheeEECCEEE
Confidence 9999999 599999 6655543 334444444444 3567999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceee-eEEEEcCCCC
Q 010854 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKV-SLVKVVPEFP 473 (499)
Q Consensus 395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p-~~~~~~~~iP 473 (499)
+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.+++.++ ++++|+.|+.| ..++++++||
T Consensus 450 ~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~l~~~~~~~~~i~~v~~lP 523 (550)
T 3rix_A 450 APAELESILL-QHPNIFDAGVAGLPDDDAG-ELPAAVVVLEHGKTMTEKEIVDY----VASQVTTAKKLRGGVVFVDEVP 523 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHH-hCCCcceEEEEEeecCCCC-ceEEEEEEecCCCCCCHHHHHHH----HHHhcccccccCCceEEEeecC
Confidence 9999999996 8999999999999998888 89999999887766666666655 45677777666 5799999999
Q ss_pred CCCCcHHHHHHHHHHHHhhhhh
Q 010854 474 RTASNKLLRRVLRDQIKHELSV 495 (499)
Q Consensus 474 ~t~~GKv~r~~l~~~~~~~~~~ 495 (499)
+|++||++|++|++++.++.+.
T Consensus 524 ~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 524 KGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ----------------------
T ss_pred CCCCcceeHHHHHHHHHhhccc
Confidence 9999999999999999876544
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.8e-67 Score=534.95 Aligned_cols=440 Identities=19% Similarity=0.165 Sum_probs=354.1
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEe--cccccccCccccchhhhhhcC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVLGAA 79 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~ 79 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++.+|+ +.... .......
T Consensus 51 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~~~~~ 121 (504)
T 1t5h_X 51 LRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAIFQSG 121 (504)
T ss_dssp CCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHHHHHC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hhhhhcc
Confidence 689999999999999999999999999999999999999999999999999999999 55321 1110111
Q ss_pred CCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh
Q 010854 80 PLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE 159 (499)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~ 159 (499)
....+ + .+.++...................++++++++|||||||.||||+++|+++.+.+..
T Consensus 122 ~~~~~-~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~ 184 (504)
T 1t5h_X 122 SGARI-I----------------FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184 (504)
T ss_dssp CCCEE-E----------------EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHH
T ss_pred cccee-E----------------EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHH
Confidence 11111 1 122222211000000111113456799999999999999999999999999988877
Q ss_pred cceeccC--cCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854 160 GWAHIDL--KVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236 (499)
Q Consensus 160 ~~~~~~~--~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~ 236 (499)
....+++ .++|++++.+|++|.+++.. ++.+++.|+++++.+ .+++..+++.|+++++|+++++|+++..|++...
T Consensus 185 ~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 263 (504)
T 1t5h_X 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAA 263 (504)
T ss_dssp HHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHC
T ss_pred HHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhc
Confidence 7766777 88999999999999999854 889999999999987 4678999999999999999999999999987652
Q ss_pred --CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCC
Q 010854 237 --LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDEC 314 (499)
Q Consensus 237 --~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~ 314 (499)
....+++++|.+++||+++++++.+.+...+ +..+++.||+||++..+... ....+++|.|.++++++++|+.
T Consensus 264 ~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~----~~~~~~~g~p~~~~~~~i~~~~ 338 (504)
T 1t5h_X 264 HAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLYMR----QPKTGTEMAPGFFSEVRIVRIG 338 (504)
T ss_dssp CTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEEEE----SCSSSSEEBCCTTCCEEEECTT
T ss_pred cccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeecccccccccccc----CCCCCccccCCCCCceeEEecc
Confidence 2445688999999999999999999998876 67899999999984333221 2355789999999999999987
Q ss_pred C---CCCCCCCCcceeeEec-c-cccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeee
Q 010854 315 G---VPYPDDQPCVGEVGLF-P-LYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNL 389 (499)
Q Consensus 315 g---~~~~~g~~~~Gei~v~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~ 389 (499)
+ ++++.|+ .|||+|+ . ..+. .++.+++.+...|. ++||+|||+|++|+||+|+++||.||+||+
T Consensus 339 ~~~~~~~~~g~--~GEl~v~gg~~~~~--GY~~~~~~t~~~f~-------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~ 407 (504)
T 1t5h_X 339 GGVDEIVANGE--EGELIVAASDSAFV--GYLNQPQATAEKLQ-------DGWYRTSDVAVWTPEGTVRILGRVDDMIIS 407 (504)
T ss_dssp SCTTCBCCTTC--CEEEEEECCTTSCC--CBTTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEE
T ss_pred CCCCCcCCCCC--cceEEEeCCceeec--eecCCchhhhhhhc-------CCccccCcEEEECCCceEEEeCcccCEEEE
Confidence 7 8999998 5999995 3 2222 23344444444442 469999999999999999999999999999
Q ss_pred CceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEEE
Q 010854 390 GGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKV 468 (499)
Q Consensus 390 ~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~~ 468 (499)
+|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.+++.++ +++ +|+.|+.|+++++
T Consensus 408 ~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----~~~~~L~~~~~P~~i~~ 481 (504)
T 1t5h_X 408 GGENIHPSEIERVLG-TAPGVTEVVVIGLADQRWG-QSVTACVVPRLGETLSADALDTF----CRSSELADFKRPKRYFI 481 (504)
T ss_dssp TTEEECHHHHHHHHT-TSTTEEEEEEEEEECSSSS-EEEEEEEEECTTCCCCHHHHHHH----HHTSSCCGGGSCSEEEE
T ss_pred CCEEECHHHHHHHHH-hCCCcceEEEEEeecCCCC-cEEEEEEEecCCcCcCHHHHHHH----HhhccCcccccceEEEE
Confidence 999999999999996 9999999999999998888 99999999987766666666555 556 8999999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHHHH
Q 010854 469 VPEFPRTASNKLLRRVLRDQIK 490 (499)
Q Consensus 469 ~~~iP~t~~GKv~r~~l~~~~~ 490 (499)
+++||+|++|||+|++|+++++
T Consensus 482 v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 482 LDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CSCCCBCTTSCBCHHHHHHHHC
T ss_pred hhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999999999999999874
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.4e-69 Score=549.74 Aligned_cols=458 Identities=22% Similarity=0.223 Sum_probs=334.3
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... +.+.......+.
T Consensus 69 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 142 (541)
T 1v25_A 69 VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKT 142 (541)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSS
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCC
Confidence 68999999999999999999999999999999999999999999999999999999987542 122222222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh--
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE-- 159 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~-- 159 (499)
...++...... ......+.++...... .....++++++++|||||||.||||+++|+++......
T Consensus 143 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 209 (541)
T 1v25_A 143 VQHFVVMDEKA-----PEGYLAYEEALGEEAD--------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS 209 (541)
T ss_dssp CCEEEESSSCC-----CTTCEEHHHHCCSCCC--------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT
T ss_pred ccEEEEecCCC-----CcccccHHHHhhccCC--------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh
Confidence 22222111111 1123356665443221 12345789999999999999999999999999876654
Q ss_pred cceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 160 GWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
....++++++|++++.+|++|.+++..++.+++.|+++++.+..++++.+++.++++++|++.++|+++..|++......
T Consensus 210 ~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 289 (541)
T 1v25_A 210 LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG 289 (541)
T ss_dssp STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT
T ss_pred hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC
Confidence 33456788999999999999999987788899999999998766688999999999999999999999999988655455
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCC----------CCccccccccCCCceEE
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQ----------PQAFGAFSTATMTAGLV 309 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~ 309 (499)
.+++++|.+++||+++++++.+.+ ..+ ++++++.||+||++..++...... .....++|+|+|+++++
T Consensus 290 ~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 367 (541)
T 1v25_A 290 HRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLR 367 (541)
T ss_dssp CCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEE
T ss_pred CcchhccEEEECCCCCCHHHHHHH-HHh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEE
Confidence 678899999999999999999988 454 789999999999987665443221 02357899999999999
Q ss_pred EECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeee
Q 010854 310 ILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMN 388 (499)
Q Consensus 310 i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~ 388 (499)
|+|++|++++.+...+|||+| ++..+.+ ++.+++.+...|. .++||+|||+|++|++|+|+++||.||+||
T Consensus 368 i~d~~g~~~~~~~~~~GEl~v~g~~v~~G--Y~~~p~~t~~~f~------~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik 439 (541)
T 1v25_A 368 VADEEGRPVPKDGKALGEVQLKGPWITGG--YYGNEEATRSALT------PDGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439 (541)
T ss_dssp EECTTSCBCCSSSCCCEEEEEESTTSBSS--CBTCHHHHHTTBC------TTSCEEEEEEEEECTTCCEEEEEESSCEEE
T ss_pred EECCCCCCCCCCCCcceEEEEeCcchhcc--ccCChhhhhhhcc------CCCCeEcCCEEEEcCCceEEEeecccceee
Confidence 999999999853111599999 6655543 3334444444442 367999999999999999999999999999
Q ss_pred eCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEE
Q 010854 389 LGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVK 467 (499)
Q Consensus 389 ~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~ 467 (499)
++|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++. +...+.+++.++ +.+ +|+.|+.|..++
T Consensus 440 ~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~-~~~~~~~~l~~~----~~~~~L~~~~~P~~i~ 512 (541)
T 1v25_A 440 SGGEWISSVDLENALM-GHPKVKEAAVVAIPHPKWQ-ERPLAVVVPR-GEKPTPEELNEH----LLKAGFAKWQLPDAYV 512 (541)
T ss_dssp ETTEEEEHHHHHCC-----------CEEEEECSSSS-EEEEECC------------------------CCCTTTSCSBC-
T ss_pred eCCEEECHHHHHHHHH-hCCCceEEEEEEecCCCcC-ceEEEEEEEC-CCCCCHHHHHHH----HHhccCccccCCcEEE
Confidence 9999999999999996 8999999999999998888 8999999876 333344445444 555 899999999999
Q ss_pred EcCCCCCCCCcHHHHHHHHHHHHhhhhh
Q 010854 468 VVPEFPRTASNKLLRRVLRDQIKHELSV 495 (499)
Q Consensus 468 ~~~~iP~t~~GKv~r~~l~~~~~~~~~~ 495 (499)
++++||+|++||++|++|++.+++++++
T Consensus 513 ~v~~lP~t~~GKi~r~~L~~~~~~~~~~ 540 (541)
T 1v25_A 513 FAEEIPRTSAGKFLKRALREQYKNYYGG 540 (541)
T ss_dssp -------------CCTTHHHHSTTSSCC
T ss_pred EeCCCCCCCccCeeHHHHHHHHHHhhCC
Confidence 9999999999999999999998876543
No 15
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.7e-67 Score=539.02 Aligned_cols=457 Identities=22% Similarity=0.277 Sum_probs=368.9
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.......+.
T Consensus 96 v~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 169 (570)
T 3c5e_A 96 LQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPS 169 (570)
T ss_dssp CCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTT
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCc
Confidence 68999999999999999999999999999999999999999999999999999999987532 122222222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHH--Hhhh
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIR--CTAE 159 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~--~~~~ 159 (499)
...++...... ..+...+.+++..... ........++++++++|||||||.||||+++|+ ++. ....
T Consensus 170 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~ 238 (570)
T 3c5e_A 170 LRIKLLVSEKS-----CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD 238 (570)
T ss_dssp CCEEEEESSSC-----CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH
T ss_pred eeEEEEecccC-----ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh
Confidence 21222111110 1123456666554322 111233567999999999999999999999999 444 3333
Q ss_pred cceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854 160 GWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237 (499)
Q Consensus 160 ~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 237 (499)
. ..++++++|+++..+|++|.+++.. ++.+++.|+++++.+. .+++..+++.|+++++|+++++|++++.|++.. .
T Consensus 239 ~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~ 316 (570)
T 3c5e_A 239 A-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-L 316 (570)
T ss_dssp T-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-T
T ss_pred h-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-c
Confidence 3 5678899999999999999999874 8899999999999864 567899999999999999999999999998863 3
Q ss_pred CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 317 (499)
Q Consensus 238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~ 317 (499)
...+++++|.++++|+++++++.+.+...+ ++++++.||+||++..+.... ......+++|.|+++++++|+|++|++
T Consensus 317 ~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~ 394 (570)
T 3c5e_A 317 SSYKFPHLQNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNV 394 (570)
T ss_dssp TTCCCTTCCEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCB
T ss_pred cccccccceEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCC
Confidence 345678999999999999999999998776 788999999999986554433 223456899999999999999999999
Q ss_pred CCCCCCcceeeEec------ccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCc
Q 010854 318 YPDDQPCVGEVGLF------PLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGG 391 (499)
Q Consensus 318 ~~~g~~~~Gei~v~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G 391 (499)
++.|+ +|||+|. +..+. +++.+++.+...|. ++||+|||+|++|++|+|+++||.||+||++|
T Consensus 395 ~~~G~--~GEl~v~~~~~~g~~v~~--GY~~~~~~t~~~f~-------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G 463 (570)
T 3c5e_A 395 LPPGT--EGDIGIRVKPIRPIGIFS--GYVDNPDKTAANIR-------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSG 463 (570)
T ss_dssp CCTTC--CEEEEEECSSBCCTTCCC--EETTCHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETT
T ss_pred CCCCC--CCeeEEeccCCCCchhhc--cccCChhHhhhhhc-------CCccccceeEEEcCCceEEEEecCCCEEEECC
Confidence 99999 5999994 22222 23334444444442 47999999999999999999999999999999
Q ss_pred eeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCC-CCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854 392 IKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFT-SQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470 (499)
Q Consensus 392 ~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~ 470 (499)
++|+|.+||++|. .||+|.+++|++.+++..+ +.++++|++.++.. .+.+.+.+.++++++++|+.|+.|..|++++
T Consensus 464 ~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~ 541 (570)
T 3c5e_A 464 YRIGPSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVL 541 (570)
T ss_dssp EEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEES
T ss_pred EEECHHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEec
Confidence 9999999999996 8999999999999988777 89999999876532 2345567778888889999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhh
Q 010854 471 EFPRTASNKLLRRVLRDQIKHE 492 (499)
Q Consensus 471 ~iP~t~~GKv~r~~l~~~~~~~ 492 (499)
+||+|++||++|++|++.+.+.
T Consensus 542 ~lP~t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 542 NLPKTVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp CCCBCTTCCBCHHHHHHHHTC-
T ss_pred cCCCCCCcCCcHHHHHHHHHhh
Confidence 9999999999999999988654
No 16
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-68 Score=547.19 Aligned_cols=460 Identities=18% Similarity=0.201 Sum_probs=282.1
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++..... ................
T Consensus 77 v~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~-~~~~~~~~~~~~~~~~ 155 (544)
T 3o83_A 77 LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV-FSNNQFIDSLHDVNLS 155 (544)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG-GSSSHHHHHHHHTTCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc-ccHHHHHHHHhhcccC
Confidence 689999999999999999999999999999999999999999999999999999999875310 0011111122222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...++...... ....+.++...... .........++++++++|||||||.||||+++|+++...+....
T Consensus 156 ~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~ 224 (544)
T 3o83_A 156 PEIILMLNHQA-------TDFGLLDWIETPAE----TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASA 224 (544)
T ss_dssp CSEEEEETCCT-------TSEEHHHHHHSCCS----SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHH
T ss_pred cceEEEecCCc-------cccchhhhhhcccc----cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHH
Confidence 22222111110 11234444433221 11112345689999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
..+++.++|++++.+|++|.+++.. ++.+++.|+++++.+ .+++..+++.|+++++|++.++|+++..|++......
T Consensus 225 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 303 (544)
T 3o83_A 225 EICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYK 303 (544)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTH
T ss_pred HHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcc
Confidence 8889999999999999999998764 889999999999987 4678999999999999999999999999998877667
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCCCC
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGVPY 318 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~~~ 318 (499)
.+++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+............++|.|+ ++++++|+|++++++
T Consensus 304 ~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~ 382 (544)
T 3o83_A 304 DQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREV 382 (544)
T ss_dssp HHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBC
T ss_pred ccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCC
Confidence 7789999999999999999999998776 78999999999988655443333333457899996 899999999999999
Q ss_pred CCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechH
Q 010854 319 PDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSV 397 (499)
Q Consensus 319 ~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~ 397 (499)
+.|+ +|||+| ++..+.+ ++.+++.+...| ..++||+|||+|++|++|+++++||.||+||++|++|+|.
T Consensus 383 ~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~ 452 (544)
T 3o83_A 383 PEGE--IGMLATRGPYTFCG--YYQSPEHNSQVF------DEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASE 452 (544)
T ss_dssp CTTC--CEEEEEECTTSCSC--CTTCHHHHHHHB------CTTCCEEEEEEEEECTTSCEEEEEEEC-------------
T ss_pred CCCC--eeEEEEecCCcchh--hcCChhhhhhhC------CCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHH
Confidence 9999 599999 6555443 334444444444 3467999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEEEcCCCCCCC
Q 010854 398 EIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPRTA 476 (499)
Q Consensus 398 ~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~~~~~iP~t~ 476 (499)
|||++|. .||+|.+++|++++++..+ +.++++|+..+. ..+.++++++ +.+ .|+.|+.|..++++++||+|+
T Consensus 453 eIE~~l~-~~p~V~~a~vv~~~~~~~g-~~~~a~vv~~~~-~~~~~~l~~~----~~~~~l~~~~~P~~i~~v~~lP~t~ 525 (544)
T 3o83_A 453 EIEKLIL-LHPEVMHAALVAIVDEQFG-EKSCAFIVSRNP-ELKAVVLRRH----LMELGIAQYKLPDQIKLIESLPLTA 525 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-hCCCccEEEEEeccCCCCC-ceEEEEEEeCCC-CCCHHHHHHH----HHhCCCCcccCCcEEEEeccCCCCC
Confidence 9999996 8999999999999998888 889999987752 2344444444 445 799999999999999999999
Q ss_pred CcHHHHHHHHHHHHhh
Q 010854 477 SNKLLRRVLRDQIKHE 492 (499)
Q Consensus 477 ~GKv~r~~l~~~~~~~ 492 (499)
+||++|++|++++++.
T Consensus 526 ~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 526 VGKVDKKQLRSILNTS 541 (544)
T ss_dssp ----------------
T ss_pred CCCCcHHHHHHHHhhc
Confidence 9999999999988764
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=9.6e-68 Score=539.65 Aligned_cols=457 Identities=15% Similarity=0.128 Sum_probs=360.1
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... .
T Consensus 51 ~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-------------~ 117 (521)
T 3l8c_A 51 LLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-------------G 117 (521)
T ss_dssp CCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-------------T
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc-------------c
Confidence 689999999999999999999999999999999999999999999999999999999875321000 0
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
.....+.++...... ...........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus 118 -----------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 178 (521)
T 3l8c_A 118 -----------------ISLVSLSEIESAKLA--EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMI 178 (521)
T ss_dssp -----------------SEEEEHHHHHHHHHH--TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHH
T ss_pred -----------------Ccccchhhhhhcccc--cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHh
Confidence 011122222111100 0011123345689999999999999999999999999998777665
Q ss_pred ee--ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854 162 AH--IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237 (499)
Q Consensus 162 ~~--~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 237 (499)
.. +++..+++++...|++|..++..++.+++.|+++++.+.. .++..+++.++++++|++.++|+++..++.....
T Consensus 179 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 258 (521)
T 3l8c_A 179 EDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDF 258 (521)
T ss_dssp HCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTC
T ss_pred hccccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcc
Confidence 54 6788999999999999999988899999999999998743 2678899999999999999999999999888776
Q ss_pred CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC----CCCccccccccCCCceEEEECC
Q 010854 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL----QPQAFGAFSTATMTAGLVILDE 313 (499)
Q Consensus 238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~i~d~ 313 (499)
...+++++|.++++|+++++++.+.+.+.++++++++.||+||++..++..... ......++|+|+|+++++|+|+
T Consensus 259 ~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~ 338 (521)
T 3l8c_A 259 CQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE 338 (521)
T ss_dssp STTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECT
T ss_pred ccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECC
Confidence 777789999999999999999999999898889999999999998755433221 1224568999999999999999
Q ss_pred CCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCce
Q 010854 314 CGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGI 392 (499)
Q Consensus 314 ~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~ 392 (499)
+|++++.|+ .|||+| ++..+.+ ++.+++.+...|.. .++++||+|||+|++|++|++++.||.||+||++|+
T Consensus 339 ~g~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~---~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~ 411 (521)
T 3l8c_A 339 DGKELSSGE--QGEIIVTGPAVSKG--YLNNPEKTAEAFFT---FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGY 411 (521)
T ss_dssp TSCBCCTTC--CEEEEEESTTSCSC--BTTCHHHHHHHEEE---ETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC----
T ss_pred CcCCCCCCC--ceEEEecccccChh--hcCCchHhhccCcC---CCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCE
Confidence 999999999 599999 6655543 33444544444421 246789999999999999999999999999999999
Q ss_pred eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCceeeeEEEEc
Q 010854 393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPLFKVSLVKVV 469 (499)
Q Consensus 393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~~~~~~~l~~~~~p~~~~~~ 469 (499)
+|+|.+||++|. .||+|.+++|++..+...+.+.++++|++.++... ...++.+.++++++++|+.|+.|..++++
T Consensus 412 ~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v 490 (521)
T 3l8c_A 412 RIELEDVSQQLN-QSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYR 490 (521)
T ss_dssp -CBHHHHHHHHH-TSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEEC
T ss_pred EeCHHHHHHHHH-cCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEe
Confidence 999999999996 89999999999887654433889999999876432 22345677888899999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhhhhccC
Q 010854 470 PEFPRTASNKLLRRVLRDQIKHELSVRSR 498 (499)
Q Consensus 470 ~~iP~t~~GKv~r~~l~~~~~~~~~~~~~ 498 (499)
++||+|++|||+|++|+++++++..+.+|
T Consensus 491 ~~lP~t~~GKidr~~L~~~~~~~~~~~~~ 519 (521)
T 3l8c_A 491 DSLPLTPNGKIDIKTLINEVNNREGHHHH 519 (521)
T ss_dssp SSCCBCTTSSBCHHHHHHHTC--------
T ss_pred cccCCCCCcCccHHHHhhhhhcCCccccC
Confidence 99999999999999999999887766543
No 18
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.2e-66 Score=529.20 Aligned_cols=454 Identities=22% Similarity=0.244 Sum_probs=355.3
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++... ..+.........
T Consensus 70 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 143 (529)
T 2v7b_A 70 VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEH 143 (529)
T ss_dssp CCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC--
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccc
Confidence 68999999999999999999999999999999999999999999999999999999987532 112222211111
Q ss_pred --ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhh-HHHhh
Q 010854 82 --KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSS-IRCTA 158 (499)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~-~~~~~ 158 (499)
..++....... .......++++...... ........++|+++++|||||||.||+|+++|+++ .....
T Consensus 144 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~ 214 (529)
T 2v7b_A 144 DGCQLIVSQPRES----EPRLAPLFEELIDAAAP-----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAEL 214 (529)
T ss_dssp -CCEEEEECC----------CCCBHHHHHHTSCC-----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHH
T ss_pred cCceEEEeccccc----ccccccchhhhhccCCC-----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHH
Confidence 11221111100 01112356666543221 11223456799999999999999999999999999 66666
Q ss_pred hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCC
Q 010854 159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCL 237 (499)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 237 (499)
.....+++.++|+++..+|++|.+++.. ++.+++.|+++++.+..++++.+++.++++++|++.++|+++..+++....
T Consensus 215 ~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~ 294 (529)
T 2v7b_A 215 YAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL 294 (529)
T ss_dssp TCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC
T ss_pred HhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc
Confidence 6666778999999999999999999876 778999999999886567889999999999999999999999999887554
Q ss_pred CcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854 238 EGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 317 (499)
Q Consensus 238 ~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~ 317 (499)
......++|.+++||+++++++.+.+.+.+ ++++++.||+||++..+...... ....+++|+|+++++++|+|++|++
T Consensus 295 ~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~ 372 (529)
T 2v7b_A 295 PARADVAIRICTSAGEALPREIGERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHA 372 (529)
T ss_dssp CCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCB
T ss_pred ccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCC
Confidence 433123899999999999999999998776 78999999999997655444332 2456889999999999999999999
Q ss_pred CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854 318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396 (499)
Q Consensus 318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~ 396 (499)
++.|+ +|||+| ++..+.+ ++.+++.+...|. ++||+|||+|+++++|+++++||.||+||++|++|+|
T Consensus 373 ~~~g~--~GEl~v~g~~~~~g--Y~~~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p 441 (529)
T 2v7b_A 373 VPDGE--VGDLYIKGPSAAVM--YWNNREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSP 441 (529)
T ss_dssp CCTTS--CEEEEEECTTCCCC--BTTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCH
T ss_pred CCCCC--ccEEEEecCCcccc--cCCChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECH
Confidence 99999 599999 5555443 3444444444443 4699999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854 397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 476 (499)
Q Consensus 397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~ 476 (499)
.+||++|. .||+|.+++|++. ++..+ +.++++|++.++... .+.+.+.++++++++|+.|+.|..++++++||+|+
T Consensus 442 ~eIE~~l~-~~p~V~~~~vv~~-~~~~~-~~~~a~vv~~~~~~~-~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 517 (529)
T 2v7b_A 442 VEVEMVLV-QHDAVLEAAVVGV-DHGGL-VKTRAFVVLKREFAP-SEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTA 517 (529)
T ss_dssp HHHHHHHT-TSTTEEEEEEEEE-EETTE-EEEEEEEEECTTCCC-CHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCT
T ss_pred HHHHHHHH-hCCCcceEEEEEe-cCCCc-eEEEEEEEecCCCCc-chhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCC
Confidence 99999996 8999999999999 55555 889999998765321 23344567778889999999999999999999999
Q ss_pred CcHHHHHHHHH
Q 010854 477 SNKLLRRVLRD 487 (499)
Q Consensus 477 ~GKv~r~~l~~ 487 (499)
+||++|++|++
T Consensus 518 ~GKi~r~~L~~ 528 (529)
T 2v7b_A 518 TGKIQRFKLRE 528 (529)
T ss_dssp TSCBCHHHHHC
T ss_pred ccchhHHhHhh
Confidence 99999999985
No 19
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1e-66 Score=534.94 Aligned_cols=437 Identities=17% Similarity=0.158 Sum_probs=352.6
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... .+ . ...
T Consensus 86 v~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~------~~-~-~~~ 157 (563)
T 1amu_A 86 IGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH------NI-Q-FNG 157 (563)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT------TS-C-CCS
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhh------hc-c-ccC
Confidence 689999999999999999999999999999999999999999999999999999999875321100 00 0 001
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
....+. ... +.. .. .........++|+++++|||||||.||||+++|+++.+.+....
T Consensus 158 ~~~~~~--~~~--------------~~~-~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~ 215 (563)
T 1amu_A 158 QVEIFE--EDT--------------IKI-RE-----GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFE 215 (563)
T ss_dssp EEEECC--CST--------------TTT-SC-----CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHH
T ss_pred ceeeec--chh--------------hcc-cc-----CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHH
Confidence 111110 000 000 00 00111234578999999999999999999999999998888777
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
..++++++|++++.+|++|..++..++.+++.|+++++.+.. .++..+++.++++++|++.++|+++..+...
T Consensus 216 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----- 290 (563)
T 1amu_A 216 NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE----- 290 (563)
T ss_dssp HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-----
T ss_pred HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-----
Confidence 778899999999999999999988888999999999998642 4678899999999999999999999877532
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC--CCCccccccccCCCceEEEECCCCCC
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL--QPQAFGAFSTATMTAGLVILDECGVP 317 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~i~d~~g~~ 317 (499)
.++++|.+++||+++++++.+.+... +.+++.||+||++..+...... ......++|+|+++++++|+|++|++
T Consensus 291 -~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~ 366 (563)
T 1amu_A 291 -RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQL 366 (563)
T ss_dssp -TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCB
T ss_pred -ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCC
Confidence 35789999999999999998888653 7899999999998654433221 22345789999999999999999999
Q ss_pred CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeech
Q 010854 318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSS 396 (499)
Q Consensus 318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~ 396 (499)
++.|+ +|||+| ++..+.+ ++.+++.+...|...+...+++||+|||+|++|++|+|+++||.||+||++|++|+|
T Consensus 367 ~~~g~--~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p 442 (563)
T 1amu_A 367 KSVGE--AGELCIGGEGLARG--YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL 442 (563)
T ss_dssp CCTTC--EEEEEEEETTCCCE--ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEH
T ss_pred CCCCC--cEEEEEechhhChh--hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCH
Confidence 99999 599999 6665543 445666666667666666788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCC
Q 010854 397 VEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTA 476 (499)
Q Consensus 397 ~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~ 476 (499)
.+||++|. .||+|.+++|++.+++..+ +.++++|+... ..+.++++++ ++++|+.|+.|..++++++||+|+
T Consensus 443 ~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~~----l~~~L~~y~~P~~i~~v~~lP~t~ 514 (563)
T 1amu_A 443 EEVESILL-KHMYISETAVSVHKDHQEQ-PYLCAYFVSEK--HIPLEQLRQF----SSEELPTYMIPSYFIQLDKMPLTS 514 (563)
T ss_dssp HHHHHHHT-TSTTEEEEEEEEEECTTSC-EEEEEEEEESS--CCCHHHHHHH----HHHHSCGGGSCSEEEECSSCCBCT
T ss_pred HHHHHHHH-hCCCcceEEEEEeecCCCC-eEEEEEEEeCC--CCCHHHHHHH----HHhhCchhhCCcEEEEecccCCCC
Confidence 99999996 8999999999999988777 89999998764 3355555554 667899999999999999999999
Q ss_pred CcHHHHHHHHHHH
Q 010854 477 SNKLLRRVLRDQI 489 (499)
Q Consensus 477 ~GKv~r~~l~~~~ 489 (499)
+||++|++|++..
T Consensus 515 ~GKi~r~~L~~~~ 527 (563)
T 1amu_A 515 NGKIDRKQLPEPD 527 (563)
T ss_dssp TSSBCGGGSCCCC
T ss_pred CcChhHHhcCCcc
Confidence 9999999998754
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.5e-67 Score=543.00 Aligned_cols=439 Identities=19% Similarity=0.205 Sum_probs=272.2
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++....... ..
T Consensus 122 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~ 188 (570)
T 4gr5_A 122 VAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TG 188 (570)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CS
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cC
Confidence 68999999999999999999999999999999999999999999999999999999987532110 01
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...+...... ... ...........++|+++++|||||||.||||+++|+++.+.+.. .
T Consensus 189 ~~~~~~~~~~----------------~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~ 246 (570)
T 4gr5_A 189 TTTLYVEDEA----------------ASD-----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-Q 246 (570)
T ss_dssp SEEEECCC----------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-C
T ss_pred Ccceeeeccc----------------ccc-----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-h
Confidence 1111110000 000 01112223456899999999999999999999999999877665 3
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC-CCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG-SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 240 (499)
..+++.++|+++..+|++|..+...++.+++.|+++++.+. ..++..+++.|+++++|++.++|+++..|++... .
T Consensus 247 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~ 323 (570)
T 4gr5_A 247 DYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---E 323 (570)
T ss_dssp CSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---G
T ss_pred hhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---h
Confidence 55688999999999999998887778999999999998864 4578899999999999999999999999987643 3
Q ss_pred cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCCceEEEECCCCCC
Q 010854 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGVP 317 (499)
Q Consensus 241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~g~~ 317 (499)
+++++|.+++||++++++..+.+...++++++++.||+||++......... ......++|+|+++++++|+|+++++
T Consensus 324 ~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~ 403 (570)
T 4gr5_A 324 AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKP 403 (570)
T ss_dssp GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCB
T ss_pred hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCC
Confidence 578999999999999999988888888889999999999988655433221 22344679999999999999999999
Q ss_pred CCCCCCcceeeEe-cccccccccccccccccchhhcCCCC--CCCccccccCceeEeecCceEEEecccCCeeeeCceee
Q 010854 318 YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPM--YKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKT 394 (499)
Q Consensus 318 ~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v 394 (499)
++.|+ +|||+| ++..+.+ ++.+++.+...|...+. ..+++||+|||+|++|++|+|+++||.||+||++|++|
T Consensus 404 ~~~G~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v 479 (570)
T 4gr5_A 404 AANGA--LGELYVAGAGLAHG--YVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRV 479 (570)
T ss_dssp CCTTC--EEEEEEEETTCCCE--ETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------
T ss_pred CCCCC--cEEEEEeecccchh--cCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEe
Confidence 99999 599999 6665553 44455556556654433 24568999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCC-CCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854 395 SSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGF-TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP 473 (499)
Q Consensus 395 ~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP 473 (499)
+|.|||++|. .||+|.+++|++.+++.++ +.++++|+...+. ..+.+++++ +++++|+.|+.|..++++++||
T Consensus 480 ~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~-~~~~a~vv~~~~~~~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP 553 (570)
T 4gr5_A 480 EPGEVEARLV-GHPAVRQAAVLAQDSRLGD-KQLVAYVVAERADAPPDAAELRR----HVAEALPAYMVPVECVPVDELP 553 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHh-cCCCcceEEEEEeeCCCCC-eEEEEEEEecCCCCCcCHHHHHH----HHHhhCccccCCcEEEEcccCC
Confidence 9999999996 8999999999999888777 8899999876532 234444444 4667899999999999999999
Q ss_pred CCCCcHHHHHHHHHH
Q 010854 474 RTASNKLLRRVLRDQ 488 (499)
Q Consensus 474 ~t~~GKv~r~~l~~~ 488 (499)
+|++|||+|++|++.
T Consensus 554 ~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 554 RTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------
T ss_pred CCCCcCcchHhhhcc
Confidence 999999999999875
No 21
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.2e-67 Score=533.99 Aligned_cols=451 Identities=16% Similarity=0.143 Sum_probs=269.6
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ............
T Consensus 53 v~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 126 (509)
T 3ivr_A 53 VHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGG 126 (509)
T ss_dssp CCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSS
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCC
Confidence 68999999999999999999999999999999999999999999999999999999987542 111122222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...++.... ....+.++...... .........++++++++|||||||.||||+++|+++.+.+.+..
T Consensus 127 ~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 193 (509)
T 3ivr_A 127 VKKAYAIGD---------GSGPFAPFKDLASD----TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLV 193 (509)
T ss_dssp CCEEEESSC---------CCSSCEEGGGTCCC----SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHH
T ss_pred ceEEEEcCC---------CCcChhhHhhccCC----CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHH
Confidence 222222111 11122222221111 11223446789999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD 241 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 241 (499)
..++++++|+++..+|++|.+++...+.+++.|++.++.. .+++..+++.|+++++|++.++|+++..|++.. ...+
T Consensus 194 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~ 270 (509)
T 3ivr_A 194 DAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQ 270 (509)
T ss_dssp HHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGG
T ss_pred HhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccc
Confidence 8889999999999999999999988666666666666665 678899999999999999999999999998876 3556
Q ss_pred ccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCCCCCC
Q 010854 242 WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDD 321 (499)
Q Consensus 242 l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g 321 (499)
++++|.++.+|++ +..+.+...++++++++.||+||++...+..... ....++|+|+++++++|+|+++++++.|
T Consensus 271 l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g 345 (509)
T 3ivr_A 271 LASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPG 345 (509)
T ss_dssp GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTT
T ss_pred hhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCC
Confidence 7899999999986 7777787788789999999999998765544332 2234589999999999999999999999
Q ss_pred CCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc--CCeeeeCceeechHH
Q 010854 322 QPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVE 398 (499)
Q Consensus 322 ~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~--~d~i~~~G~~v~~~~ 398 (499)
+ +|||+| ++..+.+ ++.+++.+...|. ++||+|||+|++|++|++++.||. +|+||++|++|+|.+
T Consensus 346 ~--~GEl~v~g~~~~~g--Y~~~~~~t~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~e 414 (509)
T 3ivr_A 346 E--VGEIVLRGPTVFKG--YWNNAAATQHAFR-------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE 414 (509)
T ss_dssp C--CEEEEEESTTSCCE--ETTCHHHHHHHTG-------GGSEEEEEEEEECTTSCEEEEEEC-----------------
T ss_pred C--ceEEEEecCCcccc--ccCCHHHhHHHhh-------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHH
Confidence 9 599999 5555443 3344555554452 579999999999999999999999 999999999999999
Q ss_pred HHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCc
Q 010854 399 IERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASN 478 (499)
Q Consensus 399 iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~G 478 (499)
||++|. .||+|.+++|++.+++..+ +.++++|++.++...+.++++++ ++++|+.|+.|..++++++||+|++|
T Consensus 415 iE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~v~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~G 488 (509)
T 3ivr_A 415 VEGALK-QHPAIADAVVIGVPDPQWS-EAIKAVCVCKPGESIAADALAEF----VASLIARYKKPKHVVFVEALPKDAKG 488 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-hCCCceeEEEEeccccccC-cEEEEEEEeCCCCCCCHHHHHHH----HHhhCcccCCCcEEEEecCCCCCCCC
Confidence 999996 8999999999999998887 88999999887665555555555 55689999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 010854 479 KLLRRVLRDQIKHELSVR 496 (499)
Q Consensus 479 Kv~r~~l~~~~~~~~~~~ 496 (499)
||+|++|++++++.-.++
T Consensus 489 Kidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 489 AIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp ------------------
T ss_pred CccHHHHHHHHhhccccc
Confidence 999999999998765543
No 22
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.4e-66 Score=524.75 Aligned_cols=430 Identities=19% Similarity=0.194 Sum_probs=333.8
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
++.||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++.... ..... ..
T Consensus 65 L~~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~--------~~~~~---~~ 133 (505)
T 3nyq_A 65 IGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE--------LPPAL---GA 133 (505)
T ss_dssp CC---CEEEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC--------CCGGG---TT
T ss_pred ccCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc--------cchhh---cc
Confidence 45799999999999999999999999999999999999999999999999999999986410 00000 00
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...+... . . ...........++++++++|||||||.||||+++|+++...+....
T Consensus 134 ~~~~~~~-~---------------------~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 188 (505)
T 3nyq_A 134 LERVDVD-V---------------------R---ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALA 188 (505)
T ss_dssp SEEEECC-T---------------------T---CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHH
T ss_pred ccccccc-c---------------------c---cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHH
Confidence 0000000 0 0 0011112335678999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC--
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE-- 238 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~-- 238 (499)
..+++.++|++++.+|++|..++.. ++.+++.|+++++.+ .++++.+++.+ ++++|+++++|+++..+++.....
T Consensus 189 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 189 DAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp HHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred HHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 8889999999999999999999875 899999999999886 56788888888 889999999999999998753322
Q ss_pred -cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEECCCCCC
Q 010854 239 -GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILDECGVP 317 (499)
Q Consensus 239 -~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~ 317 (499)
..+++++|.+++||+++++++.+++...+ ++++++.||+||++..+.... ......+++|+|+++++++|+|++|++
T Consensus 267 ~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~ 344 (505)
T 3nyq_A 267 LAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTP 344 (505)
T ss_dssp HHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----C
T ss_pred hhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCC
Confidence 24577899999999999999999988765 789999999999987655433 334556899999999999999999999
Q ss_pred CCC---CCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEeccc-CCeeeeCce
Q 010854 318 YPD---DQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGI 392 (499)
Q Consensus 318 ~~~---g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~-~d~i~~~G~ 392 (499)
++. |+ +|||+| ++..+.+ ++.+++.+...| ..++||+|||+|++|++|+++++||. ||+||++|+
T Consensus 345 ~~~~~~g~--~GEl~v~g~~v~~G--Y~~~~~~t~~~f------~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~ 414 (505)
T 3nyq_A 345 IAALDGES--VGEIQVRGPNLFTE--YLNRPDATAAAF------TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGY 414 (505)
T ss_dssp CCCCCSCC--CEEEEEESTTSCCE--ETTCHHHHHHTB------CTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTE
T ss_pred cccCCCCc--eEEEEEecCchhhh--hCCChhHhhhhh------cCCCCCccCCeEEECCCccEEEeCCccCceEEeCCE
Confidence 876 66 599999 5555443 333444444444 24679999999999999999999998 589999999
Q ss_pred eechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCC-CCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCC
Q 010854 393 KTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKG-FTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPE 471 (499)
Q Consensus 393 ~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~ 471 (499)
+|+|.|||++|. .||+|.+++|++.+++..+ +.++++|++.+. ...+.++++++ ++++|+.|+.|..++++++
T Consensus 415 ~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~l~a~vv~~~~~~~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~ 488 (505)
T 3nyq_A 415 KIGAGEIENALL-EHPEVREAAVTGEPDPDLG-ERIVAWIVPADPAAPPALGTLADH----VAARLAPHKRPRVVRYLDA 488 (505)
T ss_dssp EECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESSTTSCCCHHHHHHH----HHHHTCGGGSCSEEEECSC
T ss_pred EECHHHHHHHHH-HCcCccEEEEEeeECCCCC-cEEEEEEEECCCCCCCCHHHHHHH----HHhhCCCCcCccEEEEECC
Confidence 999999999996 9999999999999998888 999999998763 33444555544 6678999999999999999
Q ss_pred CCCCCCcHHHHHHHHH
Q 010854 472 FPRTASNKLLRRVLRD 487 (499)
Q Consensus 472 iP~t~~GKv~r~~l~~ 487 (499)
||+|++||++|++|++
T Consensus 489 lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 489 VPRNDMGKIMKRALNR 504 (505)
T ss_dssp CCC-------------
T ss_pred CCCCCCcCeeHHhhcc
Confidence 9999999999999986
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.3e-65 Score=530.19 Aligned_cols=459 Identities=18% Similarity=0.196 Sum_probs=369.0
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++++++++++++...... ...............
T Consensus 72 v~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~-~~~~~~~~~~~~~~~ 150 (617)
T 3rg2_A 72 IKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF-SGDDFLNTFVTEHSS 150 (617)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHHSTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEeccccccc-ccHHHHHHHhhcCCc
Confidence 6899999999999999999999999999999999999999999999999999999998753200 000111122222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
...+..... .....+.+....... ........++++|+++|||||||.||||+++|+++.+.+....
T Consensus 151 ~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~ 217 (617)
T 3rg2_A 151 IRVVQLLND--------SGEHNLQDAINHPAE-----DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSV 217 (617)
T ss_dssp CCEEEEETC--------CSTTBHHHHHHSCCS-----SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHH
T ss_pred cceeeeccc--------ccccchhhhhccccc-----ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHH
Confidence 222221111 112234444433221 1222345679999999999999999999999999999998888
Q ss_pred eeccCcCCcEEEeecCccccchhhh--hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCC-
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVI--LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLE- 238 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~--~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~- 238 (499)
..+++.++|++++.+|++|.+++.. ++.+++.|+++++.+ ..++..+++.++++++|++.++|+++..|++.....
T Consensus 218 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 296 (617)
T 3rg2_A 218 EICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGE 296 (617)
T ss_dssp HHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTC
T ss_pred HhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccc
Confidence 8889999999999999999988764 899999999999987 457889999999999999999999999988754322
Q ss_pred -cccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccC-CCceEEEECCCCC
Q 010854 239 -GLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTAT-MTAGLVILDECGV 316 (499)
Q Consensus 239 -~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~i~d~~g~ 316 (499)
..+++++|.+++|||++++++.+.+...+ ++++++.||+||++..+............++|.|+ ++.+++|+|++++
T Consensus 297 ~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~ 375 (617)
T 3rg2_A 297 SRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGN 375 (617)
T ss_dssp CTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSC
T ss_pred ccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCC
Confidence 33688999999999999999999988776 78999999999998755443332223446889997 7889999999999
Q ss_pred CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854 317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 395 (499)
Q Consensus 317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~ 395 (499)
+++.|+ +|||+| ++....+ ++.+++.+...| ..++||+|||+|++++||+|+++||.||+||++|++|+
T Consensus 376 ~~p~G~--~GEl~i~G~~v~~G--Y~~~p~~t~~~f------~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~ 445 (617)
T 3rg2_A 376 PLPQGE--VGRLMTRGPYTFRG--YYKSPQHNASAF------DANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIA 445 (617)
T ss_dssp BCCTTC--CEEEEEECSSSCSC--CTTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEE
T ss_pred CCCCCC--ceEEEecCccccch--hcCChhhhhhcc------CCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeC
Confidence 999999 599999 5555443 344555555555 24579999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHh-hcCCceeeeEEEEcCCCCC
Q 010854 396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQS-KLNPLFKVSLVKVVPEFPR 474 (499)
Q Consensus 396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~p~~~~~~~~iP~ 474 (499)
|.|||++|. .||+|.+++|++.+++..+ +.++++++..+ ..+.+++.++ +.+ .|+.|+.|..++++++||+
T Consensus 446 ~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a~vv~~~--~~~~~~l~~~----l~~~~lp~~~vP~~~~~v~~lP~ 517 (617)
T 3rg2_A 446 AEEIENLLL-RHPAVIYAALVSMEDELMG-EKSCAYLVVKE--PLRAVQVRRF----LREQGIAEFKLPDRVECVDSLPL 517 (617)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----HHTTTCCGGGSCSEEEECSCCCB
T ss_pred HHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEEEEEEeCC--CCCHHHHHHH----HHhCCCccccCCcEEEEecccCC
Confidence 999999996 8999999999999888777 88999999876 3455555555 445 6999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhhhh
Q 010854 475 TASNKLLRRVLRDQIKHELS 494 (499)
Q Consensus 475 t~~GKv~r~~l~~~~~~~~~ 494 (499)
|++||++|++|++++.+...
T Consensus 518 t~~GKidR~~L~~~~~~~~~ 537 (617)
T 3rg2_A 518 TAVGKVDKKQLRQWLASRAS 537 (617)
T ss_dssp CTTSSBCHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHhcccc
Confidence 99999999999998876543
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2e-66 Score=566.37 Aligned_cols=466 Identities=20% Similarity=0.227 Sum_probs=288.8
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+|+++|++++++++|||+++|++++|++|.++++++.+++++++++++|+++... ..+.........
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~ 183 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYV------DKIKPLQNDDGV 183 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTT------TTSHHHHHTSCC
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHH------HHHHHHhhcCCc
Confidence 68999999999999999999999999999999999999999999999999999999988543 222333222222
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
..+.+. .. .......+...+.++...... ...........++|+++++|||||||.||||+++|+++...+....
T Consensus 184 ~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 184 VIVCID-DN--ESVPIPEGCLRFTELTQSTTE--ASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEEECC-CC--TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred eEEEeC-Cc--ccccCCcccccHHHHhhcccc--ccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 222221 11 111122334455555433221 1112223346789999999999999999999999999988776543
Q ss_pred e----eccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCC
Q 010854 162 A----HIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNC 236 (499)
Q Consensus 162 ~----~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~ 236 (499)
. .+++.++|++++.+|++|.+++.. ++.++..|+++++.+ .++++.+++.|+++++|++.++|+++..|++...
T Consensus 259 ~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred HhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 3 456889999999999999999865 888999999999987 5678999999999999999999999999999887
Q ss_pred CCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCC----CCCCCccccccccCCCceEEEEC
Q 010854 237 LEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGS----LLQPQAFGAFSTATMTAGLVILD 312 (499)
Q Consensus 237 ~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~i~d 312 (499)
....+++++|.+++||+++++++.+++...++++++++.||+||++....... .......+++|.|+++++++|+|
T Consensus 338 ~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d 417 (979)
T 3tsy_A 338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVD 417 (979)
T ss_dssp GGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEEC
T ss_pred ccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEe
Confidence 77788999999999999999999999998888899999999999987654432 12234567899999999999999
Q ss_pred -CCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeC
Q 010854 313 -ECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLG 390 (499)
Q Consensus 313 -~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~ 390 (499)
++|++++.|+ .|||+| ++..+.+ ++.+++.+...| ..++||+|||+|++|++|+|+++||.||+||++
T Consensus 418 ~~~~~~~~~g~--~GEl~i~g~~v~~G--Y~~~p~~t~~~f------~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~ 487 (979)
T 3tsy_A 418 PDTGDSLSRNQ--PGEICIRGHQIMKG--YLNNPAATAETI------DKDGWLHTGDIGLIDDDDELFIVDRLKELIKYK 487 (979)
T ss_dssp TTSCCBCCTTC--CEEEEEESTTSCSE--ETTCHHHHHHHB------CTTSCEEEEEEEEECTTSCEEEEEESCC-----
T ss_pred CCCCCCCCCCC--ccEEEEECCCcccc--ccCChhhhhhhc------cCCCcEEcCCEEEEcCCceEEEecCCCCEEEEC
Confidence 7799999999 499999 6655543 334444444444 356799999999999999999999999999999
Q ss_pred ceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854 391 GIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470 (499)
Q Consensus 391 G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~ 470 (499)
|++|+|.|||++|. .||+|.+++|++.+++..+ +.++++|+..++...+.++++++ ++++|+.|+.|..+++++
T Consensus 488 G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~l~~~----l~~~l~~~~~p~~i~~v~ 561 (979)
T 3tsy_A 488 GFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSKDSELSEDDVKQF----VSKQVVFYKRINKVFFTE 561 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECCCCCCCHHHHHHH----HHHhcccccCCeEEEEeC
Confidence 99999999999996 8999999999999988887 89999999877655555555554 567899999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhhhh
Q 010854 471 EFPRTASNKLLRRVLRDQIKHELSV 495 (499)
Q Consensus 471 ~iP~t~~GKv~r~~l~~~~~~~~~~ 495 (499)
+||+|++||++|++|++++.+.+++
T Consensus 562 ~lP~t~~GKi~r~~L~~~~~~~~~~ 586 (979)
T 3tsy_A 562 SIPKAPSGKILRKDLRAKLANGLGS 586 (979)
T ss_dssp -------------------------
T ss_pred CcCcCCCCCeeHHHHHHHHHhhcCC
Confidence 9999999999999999998875543
No 25
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.5e-65 Score=530.49 Aligned_cols=433 Identities=19% Similarity=0.164 Sum_probs=343.6
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++..... ... .
T Consensus 74 v~~g~~V~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~------~~~-------~ 140 (620)
T 4dg8_A 74 PQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPT------PAN-------G 140 (620)
T ss_dssp CSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCC------CCT-------T
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccc------ccc-------C
Confidence 689999999999999999999999999999999999999999999999999999997653210 000 0
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
.... .+... .. ...........++++|+++|||||||.||||+++|+++.+.+.. .
T Consensus 141 ~~~~-----------------~~~~~---~~---~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~ 196 (620)
T 4dg8_A 141 LPCV-----------------PVRHL---PA---APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-Q 196 (620)
T ss_dssp SCEE-----------------EGGGC---CC---CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-C
T ss_pred Ccee-----------------eeccC---Cc---CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-H
Confidence 0000 00000 00 01111222346799999999999999999999999999887766 4
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecC-CCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCcc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ-GSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGL 240 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 240 (499)
..+++.++++++...|++|..++..++.+++.|+++++.+ ...++..+++.|+++++|++.++|+++..|++.. ..
T Consensus 197 ~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~ 273 (620)
T 4dg8_A 197 SFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PD 273 (620)
T ss_dssp GGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GG
T ss_pred HhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hh
Confidence 5678899999999999999999988999999999999874 3457889999999999999999999999998753 34
Q ss_pred cccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCC---CCCCccccccccCCCceEEEECCCCCC
Q 010854 241 DWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSL---LQPQAFGAFSTATMTAGLVILDECGVP 317 (499)
Q Consensus 241 ~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~i~d~~g~~ 317 (499)
+++++|.+++|||+++++..+.+...++++++++.||+||++...+.... .......++|+|+++++++|+|+++++
T Consensus 274 ~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~ 353 (620)
T 4dg8_A 274 CLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQE 353 (620)
T ss_dssp GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCB
T ss_pred hCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCC
Confidence 57899999999999998888888778778999999999999865443222 123345789999999999999998888
Q ss_pred -CCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCc--cccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854 318 -YPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGM--CLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 393 (499)
Q Consensus 318 -~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~ 393 (499)
++.|+ +|||+| ++..+.+ ++.+++.+...|...+. .+. +||+|||+|++++||+|+++||.||+||++|++
T Consensus 354 ~~~~g~--~GEl~i~G~~v~~G--Y~~~p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~r 428 (620)
T 4dg8_A 354 IAEPDR--AGEIVAFGAGLAQG--YRNDAARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYR 428 (620)
T ss_dssp CCSSSC--CEEEEEEETTCCSE--ETTCHHHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEE
T ss_pred CCCCCC--ceEEEEeccccccc--cCCChhhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEE
Confidence 78888 599999 6655543 34455666666654332 233 799999999999999999999999999999999
Q ss_pred echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCC
Q 010854 394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFP 473 (499)
Q Consensus 394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP 473 (499)
|+|.|||++|. .||+|.+++|++.++... ..++++++... +.+.+ ++.++|+.|+.|..++++++||
T Consensus 429 i~~~eIE~~l~-~~p~V~~a~Vv~~~~~~~--~~lv~~~~~~~------~~~~~----~l~~~Lp~y~~P~~~~~v~~lP 495 (620)
T 4dg8_A 429 LDLPALEQRFR-RQPGILDCALLVRERNGV--KQLLCAWTGKA------DASPQ----ALLRQLPTWQRPHACVRVEALP 495 (620)
T ss_dssp EEHHHHHHHHH-TSTTEEEEEEEEEEETTE--EEEEEEEEECT------TCCCH----HHHHHSCGGGSCSEEEECSSCC
T ss_pred cCHHHHHHHHH-hCCCccEEEEEEEeCCCc--eEEEEEEecCh------HHHHH----HHHHhChhhcCCcEEEEECcCC
Confidence 99999999997 899999999999887644 34444444321 11222 3456899999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 010854 474 RTASNKLLRRVLRDQIKHE 492 (499)
Q Consensus 474 ~t~~GKv~r~~l~~~~~~~ 492 (499)
+|++||++|++|++.+.+.
T Consensus 496 ~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 496 LTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp CC----CCHHHHHHHTCSC
T ss_pred CCcccCHhHHHHhhccccc
Confidence 9999999999999877554
No 26
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.5e-65 Score=515.77 Aligned_cols=450 Identities=16% Similarity=0.177 Sum_probs=330.2
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCce
Q 010854 4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 83 (499)
Q Consensus 4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (499)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++........ ..........
T Consensus 47 ~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~------~~~~~~~~~~ 120 (501)
T 3ipl_A 47 QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGF------QIVSLDDIEF 120 (501)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTS------EEEETTC---
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccc------ccccccccee
Confidence 7999999999999999999999999999999999999999999999999999999875432110 0000000000
Q ss_pred EEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhccee
Q 010854 84 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH 163 (499)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~ 163 (499)
......... .........+.....................+++++++++|||||||.||+|+++|+++...+......
T Consensus 121 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~ 198 (501)
T 3ipl_A 121 AGRDITTNG--LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES 198 (501)
T ss_dssp -------------------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH
T ss_pred eeeeccccc--ccccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh
Confidence 000000000 000000000000000000000000111234568999999999999999999999999999998888888
Q ss_pred ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccccc
Q 010854 164 IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWT 243 (499)
Q Consensus 164 ~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~ 243 (499)
+++.++|++++.+|++|.+++..++.+++.|+++++.+ .++++.+++.|+++++|++.++|+++..|++.......
T Consensus 199 ~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--- 274 (501)
T 3ipl_A 199 LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY--- 274 (501)
T ss_dssp TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---
T ss_pred hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---
Confidence 89999999999999999999988999999999999987 46889999999999999999999999999887654432
Q ss_pred ceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC-CCCccccccccCCCceEEEECCCCCCCCCCC
Q 010854 244 KIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL-QPQAFGAFSTATMTAGLVILDECGVPYPDDQ 322 (499)
Q Consensus 244 ~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~ 322 (499)
++|.+++||+++++++.+.+.. + ++++++.||+||+++.+...... ......++|.|+++++++|+|++ .++
T Consensus 275 ~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~ 347 (501)
T 3ipl_A 275 NLQKILLGGAKLSATMIETALQ-Y-NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG 347 (501)
T ss_dssp TCCEEEECSSCCCHHHHHHHHH-T-TCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC
T ss_pred cccEEEEeCCCCCHHHHHHHHH-h-CCCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC
Confidence 8999999999999999888875 3 78999999999998655443322 22356789999999999999965 334
Q ss_pred CcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHH
Q 010854 323 PCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER 401 (499)
Q Consensus 323 ~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~ 401 (499)
.|||+| ++..+.++ +.+++.+.. + .++||+|||+|++|++|++++.||.||+||++|++|+|.+||+
T Consensus 348 --~GEl~v~g~~~~~gY--~~~~~~t~~-~-------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~ 415 (501)
T 3ipl_A 348 --HGELMIKGANVMNGY--LYPTDLTGT-F-------ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIET 415 (501)
T ss_dssp --CEEEEEESTTSCSCC--SBSTTCCCS-E-------ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHH
T ss_pred --ccEEEEeccchhhhh--CcChhhcch-h-------cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHH
Confidence 499999 65555432 222222221 1 3579999999999999999999999999999999999999999
Q ss_pred HHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHH
Q 010854 402 VCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLL 481 (499)
Q Consensus 402 ~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~ 481 (499)
+|. .||+|.+++|++.+++..+ +.++++++... ..+.++++++ ++++|+.|+.|..++++++||+|++||++
T Consensus 416 ~l~-~~p~V~~~~vv~~~~~~~g-~~~~a~v~~~~--~~~~~~l~~~----l~~~L~~~~~P~~i~~v~~lP~t~~GKi~ 487 (501)
T 3ipl_A 416 VAK-QFPGISDAVCVGHPDDTWG-QVPKLYFVSES--DISKAQLIAY----LSKHLAKYKVPKHFEKVDTLPYTSTGKLQ 487 (501)
T ss_dssp HHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEESS--CCCHHHHHHH----HHHHSCGGGSCSEEEECSSCC--------
T ss_pred HHH-hCCCccEEEEEEEecccCC-ceEEEEEEeCC--CCCHHHHHHH----HHhhCccccCCCEEEEecccCCCCCCCEe
Confidence 996 9999999999999988888 88999988743 3455555555 55689999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 010854 482 RRVLRDQIKHE 492 (499)
Q Consensus 482 r~~l~~~~~~~ 492 (499)
|++|++...++
T Consensus 488 R~~l~~~~~~~ 498 (501)
T 3ipl_A 488 RNKLYREGHHH 498 (501)
T ss_dssp -----------
T ss_pred HHHHhhccccc
Confidence 99999887664
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.7e-63 Score=516.39 Aligned_cols=458 Identities=14% Similarity=0.088 Sum_probs=352.2
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCC---CHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF---AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGA 78 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 78 (499)
+++||+|+++++|++++++++|||+++|++++|+++.. +.+++.++++.+++++++++........... ......
T Consensus 62 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~ 139 (590)
T 3kxw_A 62 AKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADE--LNTNPK 139 (590)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-------CCE
T ss_pred CCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhh--hhhccc
Confidence 68999999999999999999999999999999999988 4578999999999999999875431111000 000000
Q ss_pred CCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854 79 APLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 158 (499)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~ 158 (499)
... ..++ ..+++..... .........++++++++|||||||.||||+++|+++...+.
T Consensus 140 ~~~-~~~~----------------~~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~ 197 (590)
T 3kxw_A 140 FLK-IPAI----------------ALESIELNRS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN 197 (590)
T ss_dssp ETT-EEEE----------------EGGGCCGGGG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHH
T ss_pred ccc-ccee----------------echhcccccc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHH
Confidence 000 0000 0111100000 11122345689999999999999999999999999999999
Q ss_pred hcceeccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCCC---ChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854 159 EGWAHIDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGSP---LERSFGKFVQDAGVTVLGTVPSLVKAWRNT 234 (499)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 234 (499)
+....+++.++|++++++|++|.+++.. ++.+++.|+++++.+... ++..+++.|+++++|++.++|+++..+++.
T Consensus 198 ~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 277 (590)
T 3kxw_A 198 KIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKR 277 (590)
T ss_dssp HHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHH
T ss_pred HHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHH
Confidence 8888899999999999999999999987 899999999999986432 578899999999999999999999988775
Q ss_pred C---CCCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCC---------------
Q 010854 235 N---CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLL--------------- 291 (499)
Q Consensus 235 ~---~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~--------------- 291 (499)
. .....+++++|.+++||+++++++.+.+...+. +..+++.||+||++..++.....
T Consensus 278 ~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (590)
T 3kxw_A 278 IREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQD 357 (590)
T ss_dssp CCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSS
T ss_pred hhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhc
Confidence 3 334567899999999999999999999887763 35799999999998766543221
Q ss_pred -----------CCCccccccccCCCceEEEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCC
Q 010854 292 -----------QPQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYK 358 (499)
Q Consensus 292 -----------~~~~~~~~g~~~~~~~~~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (499)
......++|.|+++ ++|+|++ +++++.|+ +|||+| ++..+.+ ++.+++.+...|...+...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~g~--~GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~ 431 (590)
T 3kxw_A 358 HRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDFDQ--VGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDD 431 (590)
T ss_dssp SBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCTTB--CEEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC
T ss_pred CceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCCCC--EEEEEEeCCccccc--ccCChhHHHHHHhccccCC
Confidence 11234688999998 8889955 99999998 599999 6665553 4556666666675443333
Q ss_pred --CccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccce--eeeEEEeCCCCCCceEEEEEEEe
Q 010854 359 --GMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESIL--ETAAISVSPAGGGPEVLVIFVVL 434 (499)
Q Consensus 359 --~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~--~~~v~~~~~~~~~~~~~~~~v~~ 434 (499)
+.+||+|||+|++| +|+|+++||.||+||++|++|+|.|||++|.+.+|+|. +++|++++++. + +.++++++.
T Consensus 432 ~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~ 508 (590)
T 3kxw_A 432 ERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEV 508 (590)
T ss_dssp ---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEE
T ss_pred CCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEe
Confidence 34499999999999 99999999999999999999999999999944899998 79999988765 4 788888888
Q ss_pred cCCC--CCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhh
Q 010854 435 KKGF--TSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHE 492 (499)
Q Consensus 435 ~~~~--~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~ 492 (499)
.++. ..+.+++.+++++.+...+.....+..++.+++||+|++|||+|++|++++.+.
T Consensus 509 ~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 509 KNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp SCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred ccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 7654 234556777776666443222122334444589999999999999999998764
No 28
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.4e-63 Score=552.30 Aligned_cols=443 Identities=18% Similarity=0.182 Sum_probs=363.0
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCC
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPL 81 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 81 (499)
+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++..........+ ...
T Consensus 511 v~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~--------~~~ 582 (1304)
T 2vsq_A 511 AGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP--------YTG 582 (1304)
T ss_dssp CCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC--------CCS
T ss_pred cCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC--------CCC
Confidence 689999999999999999999999999999999999999999999999999999999875421110000 001
Q ss_pred ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc
Q 010854 82 KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW 161 (499)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~ 161 (499)
..+++.. ...... . .........++++|+++|||||||.||||+++|+++.+. .+..
T Consensus 583 ~~~~~~~---------------~~~~~~-~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~ 639 (1304)
T 2vsq_A 583 TTLFIDD---------------QTRFEE-Q------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHV 639 (1304)
T ss_dssp EEEESSC---------------GGGGGS-C------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSC
T ss_pred cEEEecc---------------cccccc-c------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHH
Confidence 1111110 000000 0 011122356799999999999999999999999999876 4555
Q ss_pred eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC--CChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCc
Q 010854 162 AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS--PLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEG 239 (499)
Q Consensus 162 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 239 (499)
..+++.++|+++...|++|..+...++.+++.|+++++.+.. .++..+.+.|+++++|++.++|++++.+.+.. .
T Consensus 640 ~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~ 716 (1304)
T 2vsq_A 640 DYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---E 716 (1304)
T ss_dssp CSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---S
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---h
Confidence 667889999999999999999988899999999999998753 46789999999999999999999999998653 2
Q ss_pred ccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCC---CCCccccccccCCCceEEEECCCCC
Q 010854 240 LDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLL---QPQAFGAFSTATMTAGLVILDECGV 316 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~i~d~~g~ 316 (499)
..++++|.+++|||+++++..+.+...+++.++++.||+||++..++..... ......++|+|+++++++|+|++++
T Consensus 717 ~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~ 796 (1304)
T 2vsq_A 717 DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQ 796 (1304)
T ss_dssp HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSC
T ss_pred hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcC
Confidence 3467899999999999999988888777678899999999998655433221 2234568999999999999999999
Q ss_pred CCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeec
Q 010854 317 PYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 395 (499)
Q Consensus 317 ~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~ 395 (499)
+++.|+ +|||+| +++...+ ++.+++.+...|...|...+++||+|||+|++++||+|+++||.||+||++|++|+
T Consensus 797 ~~p~G~--~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie 872 (1304)
T 2vsq_A 797 LQPFGA--VGELCISGMGVSKG--YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIE 872 (1304)
T ss_dssp BCCTTC--CEEEEEEETTCCCC--BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEE
T ss_pred CCCCCC--ceEEEEeccccCcc--ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeC
Confidence 999999 599999 6665543 44566667777776777778899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcCCCCCC
Q 010854 396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRT 475 (499)
Q Consensus 396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t 475 (499)
|.|||++|. .+|+|.+++|++.++...+ +.++++++... ..+.++++++ ++++|+.|++|..++++++||+|
T Consensus 873 ~~eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~--~~~~~~l~~~----l~~~Lp~ymvP~~~~~l~~lP~t 944 (1304)
T 2vsq_A 873 LEEIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRT--QLSAEDVKAH----LKKQLPAYMVPQTFTFLDELPLT 944 (1304)
T ss_dssp HHHHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSS--SSCHHHHHHH----HHHHSCGGGSCSEEEEESCCCCC
T ss_pred HHHHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCC--CCCHHHHHHH----HHHhChHhhhccEEEEecccCCC
Confidence 999999996 8999999999999887777 89999999765 3455555544 66789999999999999999999
Q ss_pred CCcHHHHHHHHHHHH
Q 010854 476 ASNKLLRRVLRDQIK 490 (499)
Q Consensus 476 ~~GKv~r~~l~~~~~ 490 (499)
++|||+|++|++...
T Consensus 945 ~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 945 TNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp SSCSSCCSCCCCCCG
T ss_pred CCcccCHhhcCCcch
Confidence 999999999876443
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.2e-63 Score=513.99 Aligned_cols=447 Identities=18% Similarity=0.199 Sum_probs=259.3
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCCCce
Q 010854 4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAPLKA 83 (499)
Q Consensus 4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (499)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... .....
T Consensus 78 ~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~ 146 (562)
T 3ite_A 78 HGRAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPET 146 (562)
T ss_dssp SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTC
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccc
Confidence 6999999999999999999999999999999999999999999999999999999864321100 00111
Q ss_pred EEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce-
Q 010854 84 IVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA- 162 (499)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~- 162 (499)
.++.. ....+.+....... ........++++++++|||||||.||||+++|+++.+.+.....
T Consensus 147 ~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 210 (562)
T 3ite_A 147 KVLDT-----------KNQSFIENLSTQDT-----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKL 210 (562)
T ss_dssp EEEET-----------TCHHHHHHHHHSCC-----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH
T ss_pred eeecc-----------cchhhhhhcccccc-----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhh
Confidence 11110 11122222222211 11122345788999999999999999999999999877655433
Q ss_pred -------eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccC
Q 010854 163 -------HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTN 235 (499)
Q Consensus 163 -------~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~ 235 (499)
.+.+...+++++..|++|..++..++.++..|+++++.+.....+.+.+.++++++|++.++|++++.+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~- 289 (562)
T 3ite_A 211 IGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV- 289 (562)
T ss_dssp HHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC-
T ss_pred hccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC-
Confidence 245778899999999999988888889999999999876443457788999999999999999999887443
Q ss_pred CCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeeecCCCCCCCccccccccCCCceEEEEC-CC
Q 010854 236 CLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTATMTAGLVILD-EC 314 (499)
Q Consensus 236 ~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~ 314 (499)
..+++++|.+++||+++++++.+.+... .++.+++.||+||++..+............++|.|+++++++|+| +.
T Consensus 290 ---~~~~~~lr~~~~gG~~l~~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~ 365 (562)
T 3ite_A 290 ---PEDAPHLVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGS 365 (562)
T ss_dssp ---GGGSTTCCEEEEESSCCCHHHHHHHTTC-SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTS
T ss_pred ---ccccCceEEEEEecCCCCHHHHHHHhhC-CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCC
Confidence 4567899999999999999999988764 478999999999998765554444455667899999999999999 67
Q ss_pred CCCCCCCCCcceeeEe-cccccccccccccccccchhhcCCCCCCCccccccCceeEeecCceEEEecccCCeeeeCcee
Q 010854 315 GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 393 (499)
Q Consensus 315 g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~ 393 (499)
+++++.|+ +|||+| ++..+.+ ++.+++.+...+ .++++||+|||+|++|++|+|+++||.||+||++|++
T Consensus 366 ~~~~~~g~--~GEl~v~g~~v~~G--Y~~~p~~t~~~~-----~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~ 436 (562)
T 3ite_A 366 NEHVKKGM--AGELVIEGSLVANG--YLNRPDAKGFCD-----INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQR 436 (562)
T ss_dssp SCBCCTTS--CEEEEEESTTSCCE--ESSCTTCCSEEE-----ETTEEEEEEEEEEEECTTSCEEEEEEC----------
T ss_pred CCCCCCCC--ceEEEEeccccchh--hCCCcccccccc-----CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEE
Confidence 88999999 599999 6555443 222333222111 2456799999999999999999999999999999999
Q ss_pred echHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCC---------HHHHHHHHHHHHHhhcCCceeee
Q 010854 394 TSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQ---------PDKLKMIFSKAIQSKLNPLFKVS 464 (499)
Q Consensus 394 v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~l~~~~~~~~~~~l~~~~~p~ 464 (499)
|+|.|||++|.+.++.+.+++|++.+++..+ +..++.++...+.... ...+.+.++++++++|+.|++|+
T Consensus 437 v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~ 515 (562)
T 3ite_A 437 LELGEVSEVIRSLSPTDIDVVTLLLNHPGTS-KQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPD 515 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ECHHHHHHHHHhcCCCceeEEEEEecCCCCc-ceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCc
Confidence 9999999999733488889998888887777 5444444443322211 12234467777888999999999
Q ss_pred EEEEcCCCCCC-CCcHHHHHHHHHHHHhh
Q 010854 465 LVKVVPEFPRT-ASNKLLRRVLRDQIKHE 492 (499)
Q Consensus 465 ~~~~~~~iP~t-~~GKv~r~~l~~~~~~~ 492 (499)
.|+++++||+| ++||++|++|++++++.
T Consensus 516 ~i~~v~~lP~t~~~GKi~r~~L~~~~~~~ 544 (562)
T 3ite_A 516 FIIPISFIPLRDTSAKTDAKALEHMFHTL 544 (562)
T ss_dssp -----------------------------
T ss_pred EEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence 99999999998 89999999999998754
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.9e-61 Score=498.56 Aligned_cols=447 Identities=17% Similarity=0.184 Sum_probs=345.7
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCC-------HHHHHHHhhcCCeeEEEecccccccCccccchhh
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSK 74 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~ 74 (499)
+++||+|+++++|++++++++|||+++|++++|+++.++ .+++.+++++++++++|+++... +....
T Consensus 71 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~ 144 (576)
T 3gqw_A 71 LKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNA 144 (576)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHH
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHH
Confidence 689999999999999999999999999999999999998 89999999999999999987542 11111
Q ss_pred hhhcCCCceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhH
Q 010854 75 VLGAAPLKAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSI 154 (499)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~ 154 (499)
..........+. ......... .........++++++++|||||||.||||+++|+++.
T Consensus 145 ~~~~~~~~~~~~-----------------~~~~~~~~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~ 202 (576)
T 3gqw_A 145 ATHDNPELHVLS-----------------HAWFKALPE-----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVM 202 (576)
T ss_dssp HGGGCTTCEEEE-----------------HHHHHTSCC-----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHH
T ss_pred hhccCCcceecc-----------------hhhhhcccc-----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHH
Confidence 111111111110 011111111 1112223457999999999999999999999999998
Q ss_pred HHhhhccee-ccCcCCcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHHH
Q 010854 155 RCTAEGWAH-IDLKVGDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLVK 229 (499)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~ 229 (499)
..+...... +++.++|++++++|++|.+++.. ++.++..|+++++.+.. .++..+++.++++++|++.++|+++.
T Consensus 203 ~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~ 282 (576)
T 3gqw_A 203 ANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYE 282 (576)
T ss_dssp HHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHH
T ss_pred HHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHH
Confidence 888776544 78999999999999999999876 78889999999887631 35788999999999999999999998
Q ss_pred HHHccCC---CCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCCCC--------
Q 010854 230 AWRNTNC---LEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQP-------- 293 (499)
Q Consensus 230 ~l~~~~~---~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~~~-------- 293 (499)
.+.+... ....+++++|.++++|+++++++.+.+...++ +..+++.||+||++..+........
T Consensus 283 ~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~ 362 (576)
T 3gqw_A 283 LCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDR 362 (576)
T ss_dssp HHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEH
T ss_pred HHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccch
Confidence 8876543 23456889999999999999999999887764 6789999999999876654432111
Q ss_pred -------------------CccccccccCCCceEEEECCCCCCCCCCCCcceeeEe-cccccccccccccccccchhhcC
Q 010854 294 -------------------QAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG 353 (499)
Q Consensus 294 -------------------~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~ 353 (499)
....++|+|+|+++++|+|++|++++.|+ +|||+| ++..+.+ ++.+++.+...+
T Consensus 363 ~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~--~GEl~v~g~~~~~g--Y~~~~~~~~~~~-- 436 (576)
T 3gqw_A 363 DILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPVAERV--VGHICISGPSLMSG--YFGDQVSQDEIA-- 436 (576)
T ss_dssp HHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEECTTSCBCCTTB--CEEEEEESTTSCCC--BTTCHHHHHHHH--
T ss_pred hhhcccCcccccCccccCccceeecCCcCCCCeEEEECCCCCCCCCCC--eEEEEEeCcccccc--ccCCcccccccc--
Confidence 11237899999999999999999999999 599999 5555443 222333222222
Q ss_pred CCCCCCccccccCceeEeecCceEEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEE
Q 010854 354 MPMYKGMCLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV 433 (499)
Q Consensus 354 ~~~~~~~~~~~TGD~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~ 433 (499)
.++||+|||+|++ +||+|+++||.||+||++|++|+|.|||++|. .||+|.++.++++.++.. ...++++
T Consensus 437 -----~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~---~~~~~~~ 506 (576)
T 3gqw_A 437 -----ATGWLDTGDLGYL-LDGYLYVTGRIKDLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVTAQE---KIILQIQ 506 (576)
T ss_dssp -----HHSCEEEEEEEEE-ETTEEEEEEETTTCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEECTTS---CEEEEEE
T ss_pred -----CCCeeeccceEEE-ECCEEEEEecCcceEEECCEEECHHHHHHHHH-hCcccccccEEEEEcCCc---cEEEEEE
Confidence 3579999999999 79999999999999999999999999999996 999999999988876533 3344444
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhhc-CCceeeeEEEEcC--CCCCCCCcHHHHHHHHHHHHhhhhhc
Q 010854 434 LKKGFTSQPDKLKMIFSKAIQSKL-NPLFKVSLVKVVP--EFPRTASNKLLRRVLRDQIKHELSVR 496 (499)
Q Consensus 434 ~~~~~~~~~~~l~~~~~~~~~~~l-~~~~~p~~~~~~~--~iP~t~~GKv~r~~l~~~~~~~~~~~ 496 (499)
..... +...+.+.+.+.+.+ +.|+.|..+.+++ +||+|++||++|++|+++++++....
T Consensus 507 ~~~~~----~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~ 568 (576)
T 3gqw_A 507 CRISD----EERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAAS 568 (576)
T ss_dssp CCCCC----HHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTCC
T ss_pred EecCc----hhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhhc
Confidence 43322 222333444454555 5678888888887 99999999999999999999887654
No 31
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.9e-53 Score=411.04 Aligned_cols=318 Identities=17% Similarity=0.131 Sum_probs=265.4
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCCh
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLE 206 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 206 (499)
.|++|+|+|||||||.||||+++|+++.+.+......++++++|++++++|++|.+|+..++.+++.|+++++.++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~-- 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTA-- 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCS--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCccc--
Confidence 378999999999999999999999999999988888899999999999999999999988999999999999987543
Q ss_pred hHHHHHHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCChhhHHHHHhhcccCceeccccccceeeeee
Q 010854 207 RSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGGTELSSAYI 286 (499)
Q Consensus 207 ~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~tE~~~~~~ 286 (499)
..++.|+++++|++.++|+++..|++.... ..+++++|.+++||+++++++.+++... +.++++.||+||++....
T Consensus 114 -~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 114 -NPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp -CTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred -cHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 345678899999999999999999887653 4468999999999999999999988753 789999999999987655
Q ss_pred cCCCCCCCccccccccCCCceEEEECCCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccC
Q 010854 287 QGSLLQPQAFGAFSTATMTAGLVILDECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHG 366 (499)
Q Consensus 287 ~~~~~~~~~~~~~g~~~~~~~~~i~d~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TG 366 (499)
.... .....+.+|.+.|++++.+.+ .||+++...+ ..++||+||
T Consensus 190 ~~~~-~~~~~g~~~~~~pgv~~~~~~------------~Gel~~~g~~-----------------------~~~g~~~TG 233 (358)
T 4gs5_A 190 LKAL-NGPEASELYVFLPGIQYGVDE------------RGCLHISGAV-----------------------TNGQTVQTN 233 (358)
T ss_dssp EEEC-SSTTCCSCEEECTTCEEEECT------------TSEEEEESGG-----------------------GTTCCEEEE
T ss_pred cccc-cccccceeeccCCCeEEEecC------------cCceEEeccc-----------------------ccCcceecC
Confidence 4433 233457889999999888744 2898873211 234689999
Q ss_pred ceeEeecCceEEEecccCCeeeeCceeechHHHHHHHh--hcCccceeeeEE-EeCCCCCCceEEEEEEEecCCCCCCHH
Q 010854 367 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--QADESILETAAI-SVSPAGGGPEVLVIFVVLKKGFTSQPD 443 (499)
Q Consensus 367 D~~~~~~~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~--~~~~~v~~~~v~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 443 (499)
|+|++|++| ++++||.||+||++|++|+|.|||++|. ..||+|.+++|+ ..+++..+ +.++++|+...+ +
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~-----~ 306 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP-----E 306 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC-----H
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC-----C
Confidence 999999998 5567999999999999999999998773 157999998886 56677777 888888875432 3
Q ss_pred HHHHHHHHHHHhhcCCceeeeEEEEcCCCCCCCCcHHHHHHHHHHHHhhh
Q 010854 444 KLKMIFSKAIQSKLNPLFKVSLVKVVPEFPRTASNKLLRRVLRDQIKHEL 493 (499)
Q Consensus 444 ~l~~~~~~~~~~~l~~~~~p~~~~~~~~iP~t~~GKv~r~~l~~~~~~~~ 493 (499)
...+.++++++++|+.|++|++|+++++||+|++|||+|++|++++++..
T Consensus 307 ~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 307 ALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred cCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 34455667778899999999999999999999999999999999887654
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=4.6e-48 Score=385.31 Aligned_cols=326 Identities=19% Similarity=0.222 Sum_probs=257.9
Q ss_pred CCCC-CCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhh-hhhhhhccCcEEE
Q 010854 124 YNPV-DAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPV-ILFSSFLNGATLA 198 (499)
Q Consensus 124 ~~~~-~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~l~~G~~~~ 198 (499)
...+ +++++++|||||||.||+|+++|+++...+.... ..+++.++|+++...|++|..+.+ .++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8999999999999999999999999877655543 345789999999999987666655 4888899999999
Q ss_pred ecCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceeccc
Q 010854 199 LYQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESC 276 (499)
Q Consensus 199 ~~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~y 276 (499)
+.+ ..+++.+++.|+++++|++.++|+++..|++.....+.+ ++++|.+++|||++++++.+.+...+ ++++++.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 886 457899999999999999999999999998875444443 78999999999999999999998877 89999999
Q ss_pred cccceeee-eecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCC
Q 010854 277 GGTELSSA-YIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM 354 (499)
Q Consensus 277 g~tE~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~ 354 (499)
|+||+++. ...... .....+.+.+++.++|+| ++|++++.|+ .|||+|+..... .+
T Consensus 239 G~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~--~Gel~v~~~~~~-------------~~--- 296 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGE--IGELVLTTLDRE-------------MM--- 296 (436)
T ss_dssp EEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTC--CEEEEEEESSCC-------------SS---
T ss_pred cchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCC--ceEEEEeccCcC-------------Cc---
Confidence 99999433 222211 112356778899999999 8999999999 599999431110 11
Q ss_pred CCCCCccccccCceeEeecCc------e---EEEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCc
Q 010854 355 PMYKGMCLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGP 425 (499)
Q Consensus 355 ~~~~~~~~~~TGD~~~~~~~G------~---l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~ 425 (499)
..+||+|||+|+++++| + +++.||.||+||++|++|+|.+||++|. .||+|.+++|++..++..+
T Consensus 297 ----~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~- 370 (436)
T 3qov_A 297 ----PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ- 370 (436)
T ss_dssp ----CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-
T ss_pred ----eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-
Confidence 24689999999999998 5 6999999999999999999999999996 8999999999999887766
Q ss_pred eEEEEEEEecCCCCCC----HHHHHHHHHHHHHhhcCCceeeeEEEEcC--CCCCCCCcHHHHHH
Q 010854 426 EVLVIFVVLKKGFTSQ----PDKLKMIFSKAIQSKLNPLFKVSLVKVVP--EFPRTASNKLLRRV 484 (499)
Q Consensus 426 ~~~~~~v~~~~~~~~~----~~~l~~~~~~~~~~~l~~~~~p~~~~~~~--~iP~t~~GKv~r~~ 484 (499)
+.++++|++. +...+ .+++.+++++.+.+.+ +.|..+.+++ +||+|+ ||++|..
T Consensus 371 ~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~---~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 371 DEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEI---LVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHH---SSCCEEEEECTTCCC--------CEE
T ss_pred cEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhc---CCceEEEEeCCCcccCcC-CcceEEE
Confidence 8999999998 55444 4456666555544332 5677888888 999999 9998853
No 33
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.8e-47 Score=386.42 Aligned_cols=345 Identities=16% Similarity=0.128 Sum_probs=260.6
Q ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCC---CCCHHHHHHHhhcCCeeEEEecccccccCccccchhhhhhcCC
Q 010854 4 KGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVLGAAP 80 (499)
Q Consensus 4 ~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 80 (499)
+||+|+++++|++++++++|||+++|++++|+++ .++.+++.+++++++++++|++..... .+........
T Consensus 81 ~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~ 154 (480)
T 3t5a_A 81 TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVD------DVVQHVARRP 154 (480)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHH------HHHHTCC---
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHH------HHHHHHhccc
Confidence 8999999999999999999999999999999999 778999999999999999999875321 1111111110
Q ss_pred C--ceEEecccCCCCCCCCCcCCCCHHHHhcccCCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCceEEecchhhHHHhh
Q 010854 81 L--KAIVLPAIGNDVGIPLREQDLSWKDFLSSVDYHPRPNYYSPVYNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTA 158 (499)
Q Consensus 81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~ 158 (499)
. ...++.. +.+... ...........++++++++|||||||.||||+++|+++...+.
T Consensus 155 ~~~~~~~~~~----------------~~~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~ 213 (480)
T 3t5a_A 155 GESPPSIIEV----------------DLLDLD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFE 213 (480)
T ss_dssp ---CCEEEEG----------------GGSCTT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHH
T ss_pred cccccceeEe----------------cccccc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHH
Confidence 0 0011110 000000 1111223345678999999999999999999999999999888
Q ss_pred hcceeccCcC------CcEEEeecCccccchhhh-hhhhhccCcEEEecCCC---CChhHHHHHHHHhCCeEEecchHHH
Q 010854 159 EGWAHIDLKV------GDVYCWPTNLGWVMGPVI-LFSSFLNGATLALYQGS---PLERSFGKFVQDAGVTVLGTVPSLV 228 (499)
Q Consensus 159 ~~~~~~~~~~------~~~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~l 228 (499)
+....+.+.. +|+++.++|++|.+++.. ++.+++.|+++++.+.. .++..+++.++++++| +.++|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~ 292 (480)
T 3t5a_A 214 QLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFA 292 (480)
T ss_dssp HHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHH
T ss_pred HHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHH
Confidence 8777777777 999999999999999765 89999999999998643 3678999999999999 88999988
Q ss_pred HHHHcc----CCCCcccccceeEEEeecCCCChhhHHHHHhhcc-----cCceeccccccceeeeeecCCCCC-------
Q 010854 229 KAWRNT----NCLEGLDWTKIRSFASTGETSNVDDDLWLSSKAW-----YNAIIESCGGTELSSAYIQGSLLQ------- 292 (499)
Q Consensus 229 ~~l~~~----~~~~~~~l~~l~~i~~~G~~l~~~~~~~~~~~~~-----~~~i~~~yg~tE~~~~~~~~~~~~------- 292 (499)
..++.. ......++++||.+++||+++++++.+.+.+.+. ++.+++.||+||++..+.......
T Consensus 293 ~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 372 (480)
T 3t5a_A 293 FELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDF 372 (480)
T ss_dssp HHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEE
T ss_pred HHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEe
Confidence 887763 2334567899999999999999999999988873 457999999999988766544321
Q ss_pred -----------------CCccccccccCCCceEEEECCC-CCCCCCCCCcceeeEe-cccccccccccccccccchhhcC
Q 010854 293 -----------------PQAFGAFSTATMTAGLVILDEC-GVPYPDDQPCVGEVGL-FPLYLGASDRLLNADHEEVYFRG 353 (499)
Q Consensus 293 -----------------~~~~~~~g~~~~~~~~~i~d~~-g~~~~~g~~~~Gei~v-~~~~~~~~~~~~~~~~~~~~~~~ 353 (499)
.....++|+|++ ++++|+|++ |++++.|+ +|||+| ++..+.+ ++.+++.+...|..
T Consensus 373 ~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~--~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~ 447 (480)
T 3t5a_A 373 DTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVDSDTCIECPDGT--VGEIWVHGDNVANG--YWQKPDESERTFGG 447 (480)
T ss_dssp CHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEETTTTEECCTTB--CEEEEEESTTSCCC--BTTBHHHHHHHHCB
T ss_pred cHHHhccCceeecCCCCcceeeecCcccC-CEEEEEcCCCCcCCCCCC--EEEEEEeCCccccc--cccCcchhHHHHhh
Confidence 124468999999 999999955 89999999 599999 6665553 45566666666642
Q ss_pred CC-----CCCCccccccCceeEeecCceEEEecc
Q 010854 354 MP-----MYKGMCLRRHGDIIKRTVGGYIIVQGR 382 (499)
Q Consensus 354 ~~-----~~~~~~~~~TGD~~~~~~~G~l~~~gR 382 (499)
.+ ..++++||+|||+|++| ||+|+++||
T Consensus 448 ~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 448 KIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred hhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 22 22357899999999997 999999998
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.6e-46 Score=375.05 Aligned_cols=327 Identities=18% Similarity=0.144 Sum_probs=259.6
Q ss_pred CCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCcc-ccchhhhhhhhhccCcEEEec
Q 010854 125 NPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLG-WVMGPVILFSSFLNGATLALY 200 (499)
Q Consensus 125 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~-~~~~~~~~~~~l~~G~~~~~~ 200 (499)
..++++++++|||||||.||+|+++|+++...+.... ..++++++|+++..+|++ |..++...+.++..|+++++.
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4678999999999999999999999999876554332 356889999999999984 666666688899999999988
Q ss_pred CCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceeccccc
Q 010854 201 QGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCGG 278 (499)
Q Consensus 201 ~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg~ 278 (499)
+. .+++.+++.|+++++|++.++|+++..|++.....+.+ ++++|.+++||+++++++.+.+.+.+ ++++++.||+
T Consensus 169 ~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~ 246 (443)
T 2y4o_A 169 SG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL 246 (443)
T ss_dssp CS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred CC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence 64 47899999999999999999999999998764433333 57999999999999999999998776 8899999999
Q ss_pred cce-ee-eeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCCC
Q 010854 279 TEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 355 (499)
Q Consensus 279 tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (499)
||+ +. +...+.. . ....+.+.+++.++|+| ++|++++.|+ .|||+|+..... .+
T Consensus 247 TE~~g~~~~~~~~~-~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~--~Gel~v~~~t~~-------------~~---- 303 (443)
T 2y4o_A 247 SEVMGPGVACECVE-T---KDGPVIWEDHFYPEIIDPVTGEVLPDGS--QGELVFTSLTKE-------------AM---- 303 (443)
T ss_dssp TTTTEEEEEEECTT-T---CCSEEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------SS----
T ss_pred hhhcCCeEEeccCC-C---CCceEEccCCeEEEEEcCCCCCCCCCCC--ceEEEEeCCCcc-------------cC----
Confidence 997 43 3332221 1 11245677899999999 6799999999 599999531110 11
Q ss_pred CCCCccccccCceeEeecC-ceE-----EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEE
Q 010854 356 MYKGMCLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLV 429 (499)
Q Consensus 356 ~~~~~~~~~TGD~~~~~~~-G~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~ 429 (499)
..+||+|||+|+++++ |++ ++.||.||+||++|++|+|.+||++|. .||+|.++++++++++..+ +.++
T Consensus 304 ---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 304 ---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 2468999999999999 986 899999999999999999999999996 8999999999988776666 8889
Q ss_pred EEEEecC--CCC---CCHHHHHHHHHHHHHhhcCCc-eeeeEEEEc--CCCCCCCCcHHHHHHH
Q 010854 430 IFVVLKK--GFT---SQPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRVL 485 (499)
Q Consensus 430 ~~v~~~~--~~~---~~~~~l~~~~~~~~~~~l~~~-~~p~~~~~~--~~iP~t~~GKv~r~~l 485 (499)
++|++.+ +.. .+.+++.+++ ++.|+.| ..|..+.++ ++||+|++||++|+..
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l----~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALAREL----QHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHH----HHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHHHHHHH----HHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9998865 321 1234455554 4455555 366677777 5999999999998653
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2e-46 Score=373.58 Aligned_cols=326 Identities=18% Similarity=0.153 Sum_probs=260.6
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCc-cccchhhhhhhhhccCcEEEe
Q 010854 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 199 (499)
Q Consensus 124 ~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~~~ 199 (499)
...++++++++|||||||.||+|+++|+++...+.... ..++++++|+++..+|+ +|..++...+.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999876654332 35678999999999998 577776668889999999998
Q ss_pred cCCCCChhHHHHHHHHhCCeEEecchHHHHHHHccCCCCccc--ccceeEEEeecCCCChhhHHHHHhhcccCceecccc
Q 010854 200 YQGSPLERSFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLD--WTKIRSFASTGETSNVDDDLWLSSKAWYNAIIESCG 277 (499)
Q Consensus 200 ~~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~--l~~l~~i~~~G~~l~~~~~~~~~~~~~~~~i~~~yg 277 (499)
.+. .+++.+++.|+++++|++.++|+++..|++.....+.+ ++++|.+++||+++++++.+.+.+.+ ++++++.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 764 57899999999999999999999999998764433333 57999999999999999999998776 789999999
Q ss_pred ccce-ee-eeecCCCCCCCccccccccCCCceEEEEC-CCCCCCCCCCCcceeeEecccccccccccccccccchhhcCC
Q 010854 278 GTEL-SS-AYIQGSLLQPQAFGAFSTATMTAGLVILD-ECGVPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGM 354 (499)
Q Consensus 278 ~tE~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~i~d-~~g~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~ 354 (499)
+||+ +. +...+.. . ....+.+.+++.++|+| ++|++++.|+ .|||+|+..... .+
T Consensus 244 ~TE~~g~~~~~~~~~-~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~--~Gel~v~~~t~~-------------~~--- 301 (437)
T 2y27_A 244 LSEVMGPGVASECVE-T---KDGPTIWEDHFYPEIIDPETGEVLPDGE--LGELVFTSLTKE-------------AL--- 301 (437)
T ss_dssp ETTTTEEEEEECCTT-T---CSSCEECTTTEEEEEECTTTCCBCCTTC--CEEEEEEESSCS-------------SS---
T ss_pred chhhcCCeeEEecCC-C---CCceeEccCceEEEEEcCCCCCCCCCCC--ccEEEEecCCcC-------------Cc---
Confidence 9997 43 3333221 1 11256677899999999 6799999999 599999531100 11
Q ss_pred CCCCCccccccCceeEeec-CceE-----EEecccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEE
Q 010854 355 PMYKGMCLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVL 428 (499)
Q Consensus 355 ~~~~~~~~~~TGD~~~~~~-~G~l-----~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~ 428 (499)
..+||+|||+|++++ +|++ ++.||.||+||++|++|+|.+||++|. .||+|.++++++++++..+ +.+
T Consensus 302 ----~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l 375 (437)
T 2y27_A 302 ----PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVL 375 (437)
T ss_dssp ----CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEE
T ss_pred ----hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceE
Confidence 246899999999999 6985 899999999999999999999999996 8999999999998876666 889
Q ss_pred EEEEEecCCCCC---CHHHHHHHHHHHHHhhcCCc-eeeeEEEEc--CCCCCCCCcHHHHHH
Q 010854 429 VIFVVLKKGFTS---QPDKLKMIFSKAIQSKLNPL-FKVSLVKVV--PEFPRTASNKLLRRV 484 (499)
Q Consensus 429 ~~~v~~~~~~~~---~~~~l~~~~~~~~~~~l~~~-~~p~~~~~~--~~iP~t~~GKv~r~~ 484 (499)
+++|++.++... +.+++.++ +++.|+.| ..|..+.++ ++||+|+ ||++|+.
T Consensus 376 ~a~v~~~~~~~~~~~~~~~l~~~----l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 376 TLNVEPCPETAPDTAAIQVAKQA----LAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEEECBCTTTTTCHHHHHHHHHH----HHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEEECCCccchhhhHHHHHHH----HHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 999998765432 22344444 55566666 367778888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=2.6e-30 Score=251.38 Aligned_cols=238 Identities=15% Similarity=0.066 Sum_probs=179.4
Q ss_pred CCCCCCeEEEEecCCCCCCCceEEecchhhHHHhhh---cceeccCcCCcEEEeecCc-cccchhhhhhhhhccCcEEEe
Q 010854 124 YNPVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAE---GWAHIDLKVGDVYCWPTNL-GWVMGPVILFSSFLNGATLAL 199 (499)
Q Consensus 124 ~~~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~---~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~l~~G~~~~~ 199 (499)
...++++++++|||||||.||+|+++|+++...+.+ ....+++.++|+++..+|+ +|..++...+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 346789999999999999999999999999888774 3455678999999999999 89999888777799999 444
Q ss_pred cCCCCChh-----------------------HHHHHHHHhCCeEEecchHHHHHHHccCCCCcccccceeEEEeecCCCC
Q 010854 200 YQGSPLER-----------------------SFGKFVQDAGVTVLGTVPSLVKAWRNTNCLEGLDWTKIRSFASTGETSN 256 (499)
Q Consensus 200 ~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~l~~l~~i~~~G~~l~ 256 (499)
.. .+++. .+++.|+++++|++.++|+++..|++.......+++++|.+++|||+++
T Consensus 166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 43 34555 7777999999999999999999998875444456789999999999999
Q ss_pred hhhHHHHH-hhcccCceeccccccceeeeeecCCCCCCCcccccccc------CCCceEEEECC-CCCCCCCCCCcceee
Q 010854 257 VDDDLWLS-SKAWYNAIIESCGGTELSSAYIQGSLLQPQAFGAFSTA------TMTAGLVILDE-CGVPYPDDQPCVGEV 328 (499)
Q Consensus 257 ~~~~~~~~-~~~~~~~i~~~yg~tE~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~i~d~-~g~~~~~g~~~~Gei 328 (499)
+++.+.+. +.++++++++.||+||+++++..+.. .++|.+ .|+++++|+|+ +|++++.|+ .|||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~--~GEl 316 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGE--RGNV 316 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTC--EEEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCC--ceEE
Confidence 99999999 78778999999999999876643321 147888 99999999996 999999999 5999
Q ss_pred EecccccccccccccccccchhhcCCCCCCCccccccCceeEeecC--c-------eEEEecccCCeeeeCce
Q 010854 329 GLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG--G-------YIIVQGRADDTMNLGGI 392 (499)
Q Consensus 329 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~--G-------~l~~~gR~~d~i~~~G~ 392 (499)
+|+...... .+ ..|+|||++++.+. | .+..++|.++..++.|.
T Consensus 317 ~vt~l~~~~------------~l---------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLSPWA------------FY---------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEETTE------------EE---------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcCccc------------cc---------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 995322111 01 12899999987543 2 34566777777777663
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.59 E-value=1.8e-15 Score=118.51 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=73.2
Q ss_pred cccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHH---HHHHHHHHHHHhhc
Q 010854 381 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPD---KLKMIFSKAIQSKL 457 (499)
Q Consensus 381 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~~~~~~~l 457 (499)
.|.||+|+++|.||||.+||++|. .||+|.++++++++++.++ +.+.++|+..++...+.. ++.+.+++++...+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccccccchhhhhHHHHHHHHHHHh
Confidence 599999999999999999999996 9999999999999988887 889999998887655543 34555555555544
Q ss_pred CCceeeeEEEEc--CCCCCCCCcHHHH
Q 010854 458 NPLFKVSLVKVV--PEFPRTASNKLLR 482 (499)
Q Consensus 458 ~~~~~p~~~~~~--~~iP~t~~GKv~r 482 (499)
. .+..+.++ ++||+| +||++|
T Consensus 79 g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 79 L---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp S---SCCEEEEECTTCSCCC----CCC
T ss_pred C---CccceEEEcCCeecCC-CCCcch
Confidence 2 23345565 489998 799877
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.58 E-value=3.4e-15 Score=116.60 Aligned_cols=96 Identities=20% Similarity=0.312 Sum_probs=74.6
Q ss_pred cccCCeeeeCceeechHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCC----CHHHHHHHHHHHHHhh
Q 010854 381 GRADDTMNLGGIKTSSVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTS----QPDKLKMIFSKAIQSK 456 (499)
Q Consensus 381 gR~~d~i~~~G~~v~~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~~~~~~~ 456 (499)
||.||+|+++|.+|+|.+||++|. .||+|.++++++++++.++ +.+++++++ ++... +.+++.+.+++++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999997 7999999998888877666 889999998 55422 3456777888777665
Q ss_pred cCCceeeeEEEEcC--CCCCCCCcHHHHH
Q 010854 457 LNPLFKVSLVKVVP--EFPRTASNKLLRR 483 (499)
Q Consensus 457 l~~~~~p~~~~~~~--~iP~t~~GKv~r~ 483 (499)
+.. +..+.+++ +||+| +||++|.
T Consensus 78 ~~~---~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 78 ILV---TPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HSS---CCEEEEECTTCSCCC----CCCE
T ss_pred hCC---ceEEEEECCCCccCC-CCceEEE
Confidence 542 23677887 89999 9998763
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.87 E-value=3.4e-08 Score=98.70 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=93.2
Q ss_pred chHHHHHHHccCCCCc------ccccc---eeEEEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCC
Q 010854 224 VPSLVKAWRNTNCLEG------LDWTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQP 293 (499)
Q Consensus 224 ~P~~l~~l~~~~~~~~------~~l~~---l~~i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~ 293 (499)
.|.+++.+.+...+.. .=|++ +..++.|| + ..-...++....+..++ ..|++||+...+...+...+
T Consensus 277 ~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p 353 (609)
T 4b2g_A 277 DPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKP 353 (609)
T ss_dssp CHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCG
T ss_pred CHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCC--h-HHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCc
Confidence 3445555655433221 12677 44555565 2 33344555444456666 89999997543322221111
Q ss_pred Cccccccc-cCCC-ceEEEEC--CC-----C---------CCCCCCCCcceeeEecccccccccccccccccchhhcCCC
Q 010854 294 QAFGAFST-ATMT-AGLVILD--EC-----G---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMP 355 (499)
Q Consensus 294 ~~~~~~g~-~~~~-~~~~i~d--~~-----g---------~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (499)
+..+. .+|+ .-.+.++ +. + ..+..|+ .+|++++.. .| .++
T Consensus 354 ---~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~--~YelViTt~-~G-------------L~R--- 411 (609)
T 4b2g_A 354 ---SEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGK--EYELVITTY-AG-------------LYR--- 411 (609)
T ss_dssp ---GGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTC--EEEEEEECT-TS-------------CCS---
T ss_pred ---ccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCC--eEEEehhhh-hh-------------hhh---
Confidence 11121 1222 3344443 22 1 1345565 377777322 11 333
Q ss_pred CCCCccccccCceeEeec----CceEEEecccCCeeeeCceeechHHHHHHHhhcC-----c--cceeeeEEE
Q 010854 356 MYKGMCLRRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDQAD-----E--SILETAAIS 417 (499)
Q Consensus 356 ~~~~~~~~~TGD~~~~~~----~G~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~-----~--~v~~~~v~~ 417 (499)
|++||+++++. ..++.+.||.++++++.|+++++.+||+++.++. . .|.|..++.
T Consensus 412 -------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 412 -------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp -------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred -------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 89999999974 4789999999999999999999999999986322 2 355666543
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.85 E-value=3.6e-08 Score=98.43 Aligned_cols=134 Identities=16% Similarity=0.118 Sum_probs=82.2
Q ss_pred ccc---eeEEEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCCCccccccc-cCCC-ceEEEEC--C
Q 010854 242 WTK---IRSFASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMT-AGLVILD--E 313 (499)
Q Consensus 242 l~~---l~~i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~i~d--~ 313 (499)
|++ +..++.||- ..-...++...++.+++ ..|++||+...+...+...+ ...+. .+|+ .-.+.++ +
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~---~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKP---EDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCG---GGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCc---ccCceeecCCcEEEEEEeccc
Confidence 677 555666662 33445555555566666 89999996543322221111 11122 1222 3344553 2
Q ss_pred C--CC-----CCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeec----CceEEEecc
Q 010854 314 C--GV-----PYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTV----GGYIIVQGR 382 (499)
Q Consensus 314 ~--g~-----~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~G~l~~~gR 382 (499)
. .+ .+..|+ .+|++++.. .| .++ |++||+++++. ..++.|.||
T Consensus 370 ~~~~~~v~l~eVe~G~--~YelViTt~-~G-------------L~R----------Yr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGC--TYEPVVTNF-AG-------------LYR----------MRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTC--EEEEEEECS-SS-------------CCS----------EECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCc--eEEEEEeec-cc-------------eee----------EEcCCEEEEcccCCCCcEEEEEEe
Confidence 2 11 234555 377877432 11 232 89999999976 467999999
Q ss_pred cCCeeeeCceeechHHHHHHHhhcC
Q 010854 383 ADDTMNLGGIKTSSVEIERVCDQAD 407 (499)
Q Consensus 383 ~~d~i~~~G~~v~~~~iE~~l~~~~ 407 (499)
.++++.+.|+++++++||+++.+..
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred cCCEEEeeeeECCHHHHHHHHHHHH
Confidence 9999999999999999999997443
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.80 E-value=8.4e-08 Score=95.51 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=85.5
Q ss_pred ccceeE--EEeecCCCChhhHHHHHhhcccCcee-ccccccceeeeeecCCCCCCCccccccc-cCCC-ceEEEE--CCC
Q 010854 242 WTKIRS--FASTGETSNVDDDLWLSSKAWYNAII-ESCGGTELSSAYIQGSLLQPQAFGAFST-ATMT-AGLVIL--DEC 314 (499)
Q Consensus 242 l~~l~~--i~~~G~~l~~~~~~~~~~~~~~~~i~-~~yg~tE~~~~~~~~~~~~~~~~~~~g~-~~~~-~~~~i~--d~~ 314 (499)
|++++. ++.+|.. ..-...++...++.++. ..|++||+...+...+...+ +..+. .+|+ .-.+.+ ++.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~---~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSP---EEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCT---TTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCc---cccceeecCCcEEEEEEecccc
Confidence 677753 3444432 33334555445566666 89999997544332222111 11111 1222 223333 322
Q ss_pred C---------CCCCCCCCcceeeEecccccccccccccccccchhhcCCCCCCCccccccCceeEeecC----ceEEEec
Q 010854 315 G---------VPYPDDQPCVGEVGLFPLYLGASDRLLNADHEEVYFRGMPMYKGMCLRRHGDIIKRTVG----GYIIVQG 381 (499)
Q Consensus 315 g---------~~~~~g~~~~Gei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~----G~l~~~g 381 (499)
+ ..+..|+ .+|++++.. .+ .++ |++||++++..- .++.|.|
T Consensus 376 ~~~~~~~v~l~eve~G~--~YelviTt~-~G-------------L~R----------Yr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGE--EYEVVITNY-AG-------------LYR----------YRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTC--EEEEEEEST-TS-------------CSS----------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCC--eEEEEEeec-cc-------------eee----------EEcCCEEEEecccCCCcEEEEEe
Confidence 2 1345666 388887432 01 232 899999998752 5789999
Q ss_pred ccCCeeeeCceeechHHHHHHHhhcC-------ccceeeeEEE
Q 010854 382 RADDTMNLGGIKTSSVEIERVCDQAD-------ESILETAAIS 417 (499)
Q Consensus 382 R~~d~i~~~G~~v~~~~iE~~l~~~~-------~~v~~~~v~~ 417 (499)
|.++++++.|+++++.+||+++.+.. -.|.|..++.
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~ 472 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYI 472 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEE
T ss_pred ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEec
Confidence 99999999999999999999986322 2366666655
No 42
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=84.57 E-value=4.5 Score=39.92 Aligned_cols=95 Identities=11% Similarity=-0.051 Sum_probs=72.5
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.+|.+|++. .+..+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSE-MIELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEecCC
Confidence 357777664 1246788877666555444 4588999999888776533 33458899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLVKA 230 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~ 230 (499)
....+.+...++..++..++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 8888999999999999999998876655
No 43
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=84.28 E-value=2 Score=42.99 Aligned_cols=85 Identities=9% Similarity=-0.086 Sum_probs=66.2
Q ss_pred EecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEec
Q 010854 147 PWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 223 (499)
Q Consensus 147 ~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 223 (499)
.+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+.+....+.+...++..++..++.
T Consensus 50 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 128 (550)
T 3rix_A 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV 128 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCccc-HHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEE
Confidence 5788776655544443 4589999999888776532 34458899999999999988888899999999999999999
Q ss_pred chHHHHHHH
Q 010854 224 VPSLVKAWR 232 (499)
Q Consensus 224 ~P~~l~~l~ 232 (499)
....+..+.
T Consensus 129 ~~~~~~~~~ 137 (550)
T 3rix_A 129 SKKGLQKIL 137 (550)
T ss_dssp CGGGHHHHH
T ss_pred cHHHHHHHH
Confidence 887666543
No 44
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=84.13 E-value=7 Score=38.92 Aligned_cols=99 Identities=15% Similarity=-0.012 Sum_probs=72.5
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
++.+|++....+ ....+|+..+...+..+. ...+++++|++...++-+.. .++.+++++..|+..+.+++.
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~ 105 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFR-HLEAYFAVPGMGAVLHTANPR 105 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHhcCcEEEecCcc
Confidence 466776543211 245678877766554444 34588999999888776532 334488999999999999888
Q ss_pred CChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854 204 PLERSFGKFVQDAGVTVLGTVPSLVKAW 231 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l 231 (499)
...+.+...++..++..++..+.+...+
T Consensus 106 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 106 LSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred cCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 8889999999999999999988766544
No 45
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=83.05 E-value=5 Score=40.04 Aligned_cols=103 Identities=10% Similarity=-0.043 Sum_probs=74.1
Q ss_pred CCCeEEEEecCCC-CCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 127 VDAVVNILFSSGT-TGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 127 ~~~~a~i~~TSGt-TG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
++.+|++....+. .+. ...+|+..+...+..+. ...+++++|++...++-+.. .++.+++++..|+..+.+++
T Consensus 33 p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID-YVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHhCCEEEccCC
Confidence 5778776653221 121 23567777665554444 34588999999888876532 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHHHHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLVKAWR 232 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 232 (499)
....+.+...++..+++.++..+.....+.
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 888899999999999999999887665543
No 46
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=82.21 E-value=9.2 Score=38.37 Aligned_cols=102 Identities=8% Similarity=-0.057 Sum_probs=73.8
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---ec-cCcCCcEEEeecCccccchhhhhhhhhccCcEEEecC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HI-DLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 201 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 201 (499)
.++.+|++.... .| ....+|+..+...+..+.. .. +++++|++...++-+.. .++.+++++..|+..+.++
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEEEecC
Confidence 357777765421 11 2356788777655544443 34 78999999888776543 2344889999999999998
Q ss_pred CCCChhHHHHHHHHhCCeEEecchHHHHHHH
Q 010854 202 GSPLERSFGKFVQDAGVTVLGTVPSLVKAWR 232 (499)
Q Consensus 202 ~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 232 (499)
+....+.+...++..++..++..+.....+.
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 161 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEVD 161 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHHH
Confidence 8888899999999999999998877665553
No 47
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=80.28 E-value=4.5 Score=40.23 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=71.8
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++... +| ..+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+.+
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 46777765422 22 34788776655544443 4588999999888776533 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 231 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l 231 (499)
....+.+...++..++..++..+.....+
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 88889999999999999999887655443
No 48
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=78.50 E-value=9.6 Score=37.06 Aligned_cols=107 Identities=13% Similarity=0.007 Sum_probs=74.2
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhccee---ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWAH---IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++.........-....+|+..+...+..+... .+. ++|++...++-+.. .++.+++++..|+..+.+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 36778877654221111233678888776665554443 454 89998877765532 33448899999999998865
Q ss_pred ---CCChhHHHHHHHHhCCeEEecchHHHHHHHcc
Q 010854 203 ---SPLERSFGKFVQDAGVTVLGTVPSLVKAWRNT 234 (499)
Q Consensus 203 ---~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 234 (499)
....+.+...++..++..++..+.....+.+.
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 34567888999999999999998887776654
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=77.45 E-value=8.9 Score=37.70 Aligned_cols=97 Identities=10% Similarity=-0.050 Sum_probs=69.7
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
++.+|++... + +..+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++.
T Consensus 16 p~~~a~~~~~---~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~ 87 (504)
T 1t5h_X 16 PDHCALAVPA---R----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNPR 87 (504)
T ss_dssp TTSEEEEETT---T----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CCceEEEEcC---C----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCCc
Confidence 5667766421 1 246788777665544443 4578999999888776543 234488999999999999888
Q ss_pred CChhHHHHHHHHhCCeEEec--chHHHHHH
Q 010854 204 PLERSFGKFVQDAGVTVLGT--VPSLVKAW 231 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~--~P~~l~~l 231 (499)
...+.+...++..+++.++. .+.....+
T Consensus 88 ~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 88 LKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp SCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred cChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 88899999999999999988 66555444
No 50
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=76.32 E-value=6.9 Score=40.14 Aligned_cols=97 Identities=12% Similarity=0.035 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---e-eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---A-HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQ 201 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~-~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~ 201 (499)
.++.+|++... ..+| ....+|+..+...+..+. . ..+++++|++...+|.+.. ..+.+++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEeeC
Confidence 46778876542 2222 234578877655544333 3 5678999999988887643 3344889999999999998
Q ss_pred CCCChhHHHHHHHHhCCeEEecchH
Q 010854 202 GSPLERSFGKFVQDAGVTVLGTVPS 226 (499)
Q Consensus 202 ~~~~~~~~~~~i~~~~~t~l~~~P~ 226 (499)
+.+..+.+...++..++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 8888899999999999999988654
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=76.02 E-value=9.5 Score=37.67 Aligned_cols=96 Identities=8% Similarity=-0.061 Sum_probs=70.7
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++.. + ....+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE-FCCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCc
Confidence 3577776653 1 1246788777665544443 4588999999888876532 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLVK 229 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~ 229 (499)
....+.+...++..++..++..+....
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAP 127 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHH
Confidence 888899999999999999998766543
No 52
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=75.68 E-value=11 Score=37.68 Aligned_cols=95 Identities=8% Similarity=-0.105 Sum_probs=70.6
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
++.+|++.. ...+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++.
T Consensus 53 p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~ 122 (563)
T 1amu_A 53 PNNVAIVCE---------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDIE 122 (563)
T ss_dssp TTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTT
T ss_pred CCCeEEEeC---------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCCC
Confidence 567776531 235788777655544443 4588999999887776532 334488999999999999888
Q ss_pred CChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854 204 PLERSFGKFVQDAGVTVLGTVPSLVKAW 231 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l 231 (499)
...+.+...++..++..++..+.....+
T Consensus 123 ~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 123 YPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 8889999999999999999888665543
No 53
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=74.36 E-value=10 Score=38.04 Aligned_cols=96 Identities=10% Similarity=0.004 Sum_probs=70.9
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++..... | ....+|...+......+. ...+++++|++...++-+.. .++.+++++..|+..+.+.+
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeCCc
Confidence 4688887765321 2 245678877665554444 34689999999988876543 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPS 226 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~ 226 (499)
....+.+...++..++..+++.+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 888899999999999999987553
No 54
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=71.86 E-value=8.2 Score=38.49 Aligned_cols=84 Identities=7% Similarity=-0.117 Sum_probs=64.6
Q ss_pred EecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEec
Q 010854 147 PWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 223 (499)
Q Consensus 147 ~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 223 (499)
.+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++....+.+...++..++..++.
T Consensus 52 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~ 130 (548)
T 2d1s_A 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEE-FFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFS 130 (548)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTT-THHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEE
T ss_pred EeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEE
Confidence 5788776665544443 4588999999888776533 33448899999999999988888899999999999999998
Q ss_pred chHHHHHH
Q 010854 224 VPSLVKAW 231 (499)
Q Consensus 224 ~P~~l~~l 231 (499)
.+.....+
T Consensus 131 ~~~~~~~~ 138 (548)
T 2d1s_A 131 SKKGLDKV 138 (548)
T ss_dssp CTTTHHHH
T ss_pred cHHHHHHH
Confidence 87655443
No 55
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.40 E-value=24 Score=30.09 Aligned_cols=87 Identities=10% Similarity=-0.119 Sum_probs=54.2
Q ss_pred EEEeecCc--cccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEec------chHH--HHHHHccCCCCc
Q 010854 171 VYCWPTNL--GWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT------VPSL--VKAWRNTNCLEG 239 (499)
Q Consensus 171 ~~l~~~p~--~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~------~P~~--l~~l~~~~~~~~ 239 (499)
+++...+. .|..|... ...--..|..++.+....+++.+.+.+++++++.+.. ++++ +..+.+..+..+
T Consensus 94 ~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~ 173 (215)
T 3ezx_A 94 LAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEK 173 (215)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTT
T ss_pred eEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcC
Confidence 44444443 38888765 4445568889999887888999999999999997666 2222 222222222122
Q ss_pred ccccceeEEEeecCCCChhh
Q 010854 240 LDWTKIRSFASTGETSNVDD 259 (499)
Q Consensus 240 ~~l~~l~~i~~~G~~l~~~~ 259 (499)
.. ..+ .+++||..++++.
T Consensus 174 ~~-~~v-~v~vGG~~~~~~~ 191 (215)
T 3ezx_A 174 LR-DSV-KCMFGGAPVSDKW 191 (215)
T ss_dssp CG-GGS-EEEEESSSCCHHH
T ss_pred CC-CCC-EEEEECCCCCHHH
Confidence 10 123 3678898887653
No 56
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=70.53 E-value=9 Score=39.18 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=70.2
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
++.+|++... ..+| ....+|+..+...+..+.. ..+++++|++...+|.+.. ..+.+++++..|+..+.+.+.
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 5778776432 2222 2356788877665544443 4689999999988887643 234588999999999999888
Q ss_pred CChhHHHHHHHHhCCeEEecch
Q 010854 204 PLERSFGKFVQDAGVTVLGTVP 225 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~~P 225 (499)
+.++.+...++..++..+++..
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 8889999999999999988754
No 57
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=69.53 E-value=16 Score=36.57 Aligned_cols=93 Identities=16% Similarity=0.054 Sum_probs=69.1
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++.. .-.+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+.+
T Consensus 88 ~pd~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLHE---------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFD-MVVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEECC---------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEcCC
Confidence 3677776641 235788777655544443 4588999999887776543 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLV 228 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l 228 (499)
....+.+...++..++..++......
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~~ 183 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPLS 183 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchhh
Confidence 88889999999999999998876543
No 58
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=68.76 E-value=24 Score=35.36 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=72.7
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++....+ ....+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+.+
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLP-LIQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchh-HHHHHHHHHHhCcEEEEecC
Confidence 3677877655411 2456788877665554443 4588999999888776543 33448899999999998876
Q ss_pred CC---ChhHHHHHHHHhCCeEEecchHHHHHHHc
Q 010854 203 SP---LERSFGKFVQDAGVTVLGTVPSLVKAWRN 233 (499)
Q Consensus 203 ~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 233 (499)
.. ..+.+...++..++..++..+.....+..
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 131 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTA 131 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHH
Confidence 54 23567788999999999999888776543
No 59
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=68.40 E-value=6.4 Score=38.79 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=62.6
Q ss_pred EecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEec
Q 010854 147 PWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 223 (499)
Q Consensus 147 ~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 223 (499)
.+|+..+...+..+.. ..+++++|++...++-+.. .++.+++.+..|+..+.+++....+.+...++..++..++.
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 4788777665544443 4588999999888776532 33448899999999999988888899999999999999998
Q ss_pred chHH
Q 010854 224 VPSL 227 (499)
Q Consensus 224 ~P~~ 227 (499)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7654
No 60
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=67.98 E-value=6.7 Score=42.42 Aligned_cols=96 Identities=14% Similarity=-0.045 Sum_probs=71.3
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++... +| ..+|+..+...+..+.. ..+++++|++...++-+. -.++.+++.+..|+..+.+++
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 46778876422 22 35787776655544443 468899999988887663 233458899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLVK 229 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~ 229 (499)
...++.+...++..++.+++..+....
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 172 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVD 172 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHH
Confidence 888899999999999999998776543
No 61
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=67.52 E-value=11 Score=37.33 Aligned_cols=96 Identities=7% Similarity=-0.100 Sum_probs=70.0
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++.. | ..+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCc
Confidence 3566776532 1 24788776655544443 4578999999888776543 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecchHHHHHH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPSLVKAW 231 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~~l~~l 231 (499)
....+.+...++..++..++..+.....+
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 88888999999999999999887655433
No 62
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=67.05 E-value=16 Score=36.32 Aligned_cols=91 Identities=12% Similarity=0.003 Sum_probs=67.1
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++. + ...+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+.+
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAE-FYIVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH-HHHHHHHHHHhCcEEecCCC
Confidence 367787763 1 245788776655544443 4588999999887765432 33448899999999998887
Q ss_pred CCChhHHHHHHHHhCCeEEecchH
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVPS 226 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P~ 226 (499)
....+.+...++..++..++..+.
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~~ 136 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSRQ 136 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEETT
T ss_pred CCCHHHHHHHHHhcCeeEEEEccc
Confidence 778889999999999999987653
No 63
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=62.23 E-value=21 Score=35.40 Aligned_cols=89 Identities=13% Similarity=-0.027 Sum_probs=66.0
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
++.+|++. + ...+|+..+...+..+.. ..+++++|++...++-+.. ..+.+++++..|+..+.+.+.
T Consensus 39 p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~ 108 (539)
T 1mdb_A 39 GDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKE-FFEVIFALFRLGALPVFALPS 108 (539)
T ss_dssp TTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCeEEecCCCC
Confidence 56677653 1 245788777665544443 4588999999887776542 334488999999999988877
Q ss_pred CChhHHHHHHHHhCCeEEecch
Q 010854 204 PLERSFGKFVQDAGVTVLGTVP 225 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~~P 225 (499)
...+.+...++..++..++..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 109 HRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp CCHHHHHHHHHHTTCSEEEEES
T ss_pred CCHHHHHHHHHhCCCCEEEecc
Confidence 7888999999999999988765
No 64
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=59.47 E-value=20 Score=35.12 Aligned_cols=88 Identities=7% Similarity=-0.132 Sum_probs=64.7
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
++.+|++.. .-.+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+++.
T Consensus 15 p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e-~~~~~la~~~~G~v~vpl~~~ 84 (512)
T 3fce_A 15 PDQTAFVWR---------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPE-MIINFLGCVKAGHAYIPVDLS 84 (512)
T ss_dssp TTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHH-HHHHHHHHHHTTCCEEEEETT
T ss_pred CCceEEEeC---------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCCC
Confidence 567776541 124788777665544443 4578899998877766532 334588999999999999888
Q ss_pred CChhHHHHHHHHhCCeEEecc
Q 010854 204 PLERSFGKFVQDAGVTVLGTV 224 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~~ 224 (499)
...+.+...++..++..++..
T Consensus 85 ~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 85 IPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp SCHHHHHHHHHHSCCCEEEES
T ss_pred CcHHHHHHHHHhcCCCEEEec
Confidence 888999999999999998765
No 65
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=59.35 E-value=17 Score=35.51 Aligned_cols=79 Identities=5% Similarity=-0.031 Sum_probs=62.1
Q ss_pred EecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchH
Q 010854 147 PWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPS 226 (499)
Q Consensus 147 ~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~ 226 (499)
.+|+..+...+..+...+.-.++|++...++-+.. .++.+++++..|+..+.+++....+.+...++..++..+++...
T Consensus 26 ~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~ 104 (501)
T 3ipl_A 26 SYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQ-SIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLP 104 (501)
T ss_dssp EEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSC
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccc
Confidence 57888887777666665544489999888876532 34458899999999999988888899999999999999887643
No 66
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=58.79 E-value=21 Score=35.06 Aligned_cols=80 Identities=8% Similarity=-0.135 Sum_probs=60.8
Q ss_pred EEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEe
Q 010854 146 IPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLG 222 (499)
Q Consensus 146 v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~ 222 (499)
-.+|+..+...+..+.. ..+++++|++...++-+. -.++.+++++..|+..+.+++....+.+...++..++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 34788777655554443 458899999887777653 23344889999999999998888889999999999999988
Q ss_pred cchH
Q 010854 223 TVPS 226 (499)
Q Consensus 223 ~~P~ 226 (499)
....
T Consensus 107 ~~~~ 110 (521)
T 3l8c_A 107 AIEE 110 (521)
T ss_dssp ESSC
T ss_pred ecCc
Confidence 7543
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=55.17 E-value=39 Score=34.18 Aligned_cols=90 Identities=4% Similarity=-0.158 Sum_probs=66.1
Q ss_pred CCCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCC
Q 010854 126 PVDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQG 202 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 202 (499)
.++.+|++.. .-.+|+..+...+..+.. ..++++++++...++-+.. ..+.+++.+..|+..+.+++
T Consensus 40 ~Pd~~Av~~~---------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~-~vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRDR---------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRE-SITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHH-HHHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEcC---------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEeeCc
Confidence 3577776531 124788777655554443 4588999999888776532 33448899999999999988
Q ss_pred CCChhHHHHHHHHhCCeEEecch
Q 010854 203 SPLERSFGKFVQDAGVTVLGTVP 225 (499)
Q Consensus 203 ~~~~~~~~~~i~~~~~t~l~~~P 225 (499)
....+.+...++..++..++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~~ 132 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDCS 132 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECC
T ss_pred cChHHHHHHHHHhCCCcEEEecC
Confidence 88888999999999999988543
No 68
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=54.74 E-value=52 Score=32.57 Aligned_cols=98 Identities=10% Similarity=0.046 Sum_probs=67.2
Q ss_pred CCCCeEEEEecCCCCCCC--ceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEec
Q 010854 126 PVDAVVNILFSSGTTGEP--KAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALY 200 (499)
Q Consensus 126 ~~~~~a~i~~TSGtTG~p--k~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 200 (499)
.++.+|++...+ ..+.. ..-.+|++.+...+..+.. ..++ ++|++...++-+.. .++.+++++..|+..+.+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~-~~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI-AFAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH-HHHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEec
Confidence 357777765432 22222 2356788777665554443 3456 69998887776543 234488999999999999
Q ss_pred CCCCChhHHHHHHHHhCCeEEecchH
Q 010854 201 QGSPLERSFGKFVQDAGVTVLGTVPS 226 (499)
Q Consensus 201 ~~~~~~~~~~~~i~~~~~t~l~~~P~ 226 (499)
.+....+.+...++..++..++....
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 88888899999999999998876543
No 69
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=54.60 E-value=30 Score=34.39 Aligned_cols=86 Identities=9% Similarity=-0.055 Sum_probs=64.1
Q ss_pred eEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCC-------hhHHHHHHH
Q 010854 145 AIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPL-------ERSFGKFVQ 214 (499)
Q Consensus 145 ~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~-------~~~~~~~i~ 214 (499)
.-.+|+..+...+..+.. ..+++++|++...++-+.. .++.+++++..|+..+.+..... .+.+...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 356788877666555443 4578999999888876542 33448899999999998876555 567888999
Q ss_pred HhCCeEEecchHHHHHH
Q 010854 215 DAGVTVLGTVPSLVKAW 231 (499)
Q Consensus 215 ~~~~t~l~~~P~~l~~l 231 (499)
..++..++........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887765544
No 70
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=53.96 E-value=17 Score=34.87 Aligned_cols=61 Identities=10% Similarity=-0.032 Sum_probs=49.4
Q ss_pred CCCCCEEEEEcCC--cHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEeccccc
Q 010854 2 FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFIL 63 (499)
Q Consensus 2 v~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~ 63 (499)
+.++|++...+|- ....+..+++++..|+..++.++ ..++.+...+++.++..++..+.+.
T Consensus 127 ~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~ 189 (436)
T 3qov_A 127 IRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTALHAIPSYA 189 (436)
T ss_dssp CCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEEECCHHHH
T ss_pred CCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEEEECHHHH
Confidence 5789999999874 35556677888999999887754 4789999999999999999887643
No 71
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=53.15 E-value=26 Score=33.46 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCC--cHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccc
Q 010854 2 FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 62 (499)
Q Consensus 2 v~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~ 62 (499)
++++|++...+|- ....+...++++..|+..++++. .+++.+...+++.++.+++..+.+
T Consensus 131 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 131 ARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp CCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 5789999999985 34555567888999999987754 478999999999999999987754
No 72
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=50.71 E-value=30 Score=33.12 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=48.9
Q ss_pred CCCCCEEEEEcCC--cHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecccc
Q 010854 2 FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFI 62 (499)
Q Consensus 2 v~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~ 62 (499)
++++|++...+|- ....+...++++..|+..++++. .+++.+...+++.++..+...+.+
T Consensus 133 ~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 133 GRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp CCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred CCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 5789999999985 34555667888999999887765 488999999999999999987754
No 73
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=47.70 E-value=85 Score=28.63 Aligned_cols=58 Identities=24% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCcH------HHHHHHHH-HHHhCcEEEEcCCCC------------CHHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTV------RAVIIYLA-IILAGYVVVSIADSF------------AAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~------~~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~ii~~ 59 (499)
|++||+|+|+.|.+. +-+-.-.. +-..|.-++.-.... ..+++..++.+-.+++|++.
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 799999999999862 22222222 234577666433211 24577777888888888874
No 74
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=44.75 E-value=42 Score=32.79 Aligned_cols=78 Identities=13% Similarity=-0.035 Sum_probs=57.9
Q ss_pred EEecchhhHHHhhhccee----ccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEE
Q 010854 146 IPWTQLSSIRCTAEGWAH----IDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVL 221 (499)
Q Consensus 146 v~~s~~~~~~~~~~~~~~----~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l 221 (499)
-.+|+..+...+..+... .+..+++++...++-+.. .++.+++++..|+..+.+++....+.+...++..++..+
T Consensus 25 ~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 25 QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPH-MIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHH-HHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEE
T ss_pred ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHH-HHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEE
Confidence 457888776655544433 345677888776665432 234588999999999999888888999999999999999
Q ss_pred ecc
Q 010854 222 GTV 224 (499)
Q Consensus 222 ~~~ 224 (499)
+..
T Consensus 104 i~~ 106 (511)
T 3e7w_A 104 IHA 106 (511)
T ss_dssp EES
T ss_pred Eec
Confidence 863
No 75
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=44.21 E-value=1e+02 Score=28.18 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCcH------HHHHHHHHHH-HhCcEEEEcCCC--------CC----HHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS--------FA----AREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~--------~~----~~~l~~~l~~~~~~~ii~~ 59 (499)
|++||+|+|+.|.+. +-+-.-...+ ..|.-++.-... -+ .+++..++.+-++++|++.
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 799999999999983 2222223333 367776643211 11 4567777777788888774
No 76
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=42.39 E-value=1.1e+02 Score=28.47 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCcH------HHHHHHHHHH-HhCcEEEEcCCC--------C----CHHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS--------F----AAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~--------~----~~~~l~~~l~~~~~~~ii~~ 59 (499)
|++||+|+|+.|.+. +-+-.-...+ ..|..++.-+.. - ..+++..++.+-++++|++.
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 789999999999973 2222222223 467776644321 1 14567777777788888774
No 77
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=40.52 E-value=46 Score=33.54 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=66.7
Q ss_pred CCCeEEEEecCCCCCCCceEEecchhhHHHhhhcce---eccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCC
Q 010854 127 VDAVVNILFSSGTTGEPKAIPWTQLSSIRCTAEGWA---HIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGS 203 (499)
Q Consensus 127 ~~~~a~i~~TSGtTG~pk~v~~s~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~ 203 (499)
+|.+|++. | .-.+|+..+...+..+.. ..+++++|++...++-+.. ..+.+++.+..|+..+.+++.
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~-~vva~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAE-LYITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHH-HHHHHHHHHhcCeEEccCCcc
Confidence 57787763 1 235788777665554443 4588999999888776532 234488999999999988877
Q ss_pred CChhHHHHHHHHhCCeEEecchH
Q 010854 204 PLERSFGKFVQDAGVTVLGTVPS 226 (499)
Q Consensus 204 ~~~~~~~~~i~~~~~t~l~~~P~ 226 (499)
...+.+...++..++..++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~~ 131 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADRQ 131 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEETT
T ss_pred ccHHHHHHHHhhcCceEEEeccc
Confidence 78889999999999999887653
No 78
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=39.46 E-value=1.1e+02 Score=28.05 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCcH------HHHHHHHHHH-HhCcEEEEcCCC--------C----CHHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTV------RAVIIYLAII-LAGYVVVSIADS--------F----AAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~------~~~~~~lA~~-~~G~~~v~l~~~--------~----~~~~l~~~l~~~~~~~ii~~ 59 (499)
|++||+|+|+.|.+. +-+-.-.+.+ ..|..++.-+.. - ..+++..++.+-++++|++.
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 799999999999974 2222223333 367776643321 1 14567777777788888774
No 79
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=36.56 E-value=64 Score=29.56 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=42.9
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 60 (499)
+++|+.|.+....+=.-...-++|.+.|.-++.+-|...+......++..++++++++.
T Consensus 68 l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 68 LIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 46788764444555566666677777788777666665566677888999999999875
No 80
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=36.35 E-value=49 Score=32.30 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=58.7
Q ss_pred EEecchhhHHHhhhcceeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecch
Q 010854 146 IPWTQLSSIRCTAEGWAHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP 225 (499)
Q Consensus 146 v~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P 225 (499)
-.+|+..+...+..+...+ ..++++...++-+.. .++.+++++..|+..+.+++....+.+...++..++..++..+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~-~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAME-TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHH-HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHH-HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 4688888887777766544 457888777765432 3344889999999999998888889999999999999999865
Q ss_pred H
Q 010854 226 S 226 (499)
Q Consensus 226 ~ 226 (499)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 4
No 81
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=33.79 E-value=1.1e+02 Score=28.02 Aligned_cols=57 Identities=7% Similarity=-0.010 Sum_probs=38.7
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCC----CCHHHHHHHhhcCCeeEEEecc
Q 010854 3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~ 60 (499)
++||.|.+..+..+.+.-...++...|+.++.++.. ...+++...++. ++++++...
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 147 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMA 147 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEES
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEEC
Confidence 689998888777766655555556678777666532 467888887764 667666543
No 82
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=30.97 E-value=89 Score=28.73 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=46.4
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEecc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~ 60 (499)
+++|.+..+....+=.-+..-++|.++|.-++-+=|...+......++..++++++++.
T Consensus 83 l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 83 ITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp CCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 56777656666666677777788888998887777777777788899999999999865
No 83
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=30.80 E-value=1.3e+02 Score=27.67 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=40.7
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCC-------CCHHHHHHHhhcCCeeEEEecc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS-------FAAREIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~ 60 (499)
+++||.|.+..+....+. .++...|+.++.++.. ...+.+...+++.++++++...
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~ 168 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCN 168 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEES
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEEC
Confidence 478999988877766543 3455778887777652 6789999999867788876543
No 84
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=29.94 E-value=1.1e+02 Score=26.78 Aligned_cols=85 Identities=18% Similarity=0.045 Sum_probs=52.1
Q ss_pred cEEEeecCc--cccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecch------HHHHHHHccCCCCcc
Q 010854 170 DVYCWPTNL--GWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP------SLVKAWRNTNCLEGL 240 (499)
Q Consensus 170 ~~~l~~~p~--~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P------~~l~~l~~~~~~~~~ 240 (499)
-+++...+. .|..|... ...--..|..++.+....+++.+.+.++++++..+...- ..+..+.+..+..+.
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~ 203 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGI 203 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCC
Confidence 344444443 37777665 333446888888887667789999999999999875432 223333333222222
Q ss_pred cccceeEEEeecCCCChh
Q 010854 241 DWTKIRSFASTGETSNVD 258 (499)
Q Consensus 241 ~l~~l~~i~~~G~~l~~~ 258 (499)
. -.+++||...+.+
T Consensus 204 ---~-~~v~vGG~~~~~~ 217 (258)
T 2i2x_B 204 ---K-IPFACGGGAVNQD 217 (258)
T ss_dssp ---C-CCEEEESTTCCHH
T ss_pred ---C-CcEEEECccCCHH
Confidence 2 2467788777644
No 85
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=29.89 E-value=1.2e+02 Score=24.62 Aligned_cols=70 Identities=11% Similarity=0.138 Sum_probs=43.6
Q ss_pred hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEE--ecCCCCCCHHHHHHHHHHHHHhhcCCceeeeEEEEcC
Q 010854 396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVV--LKKGFTSQPDKLKMIFSKAIQSKLNPLFKVSLVKVVP 470 (499)
Q Consensus 396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~~~ 470 (499)
-.|+++.|. .+++|..+-|...-+.... ..+.|-|+ +.++...+... . .|+..+...++. ..|..|-+++
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~-~~~sASV~l~~~~g~~l~~~q-~-~I~~LVa~SV~g-L~~enVtVvd 163 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNES-QPSSAAVLVISSPEVNLAPSV-I-QIKNLVKNSVDD-LKLENISVVI 163 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC--------CEEEEEEEECTTCCCGGGH-H-HHHHHHHHHSTT-CCGGGEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCC-CCceEEEEEEeCCCCCCcHhH-H-HHHHHHHHhcCC-CCcccEEEEe
Confidence 568999996 9999999988766554332 44554444 55565555543 2 477778777775 5566666665
No 86
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=29.48 E-value=1.7e+02 Score=27.74 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=31.8
Q ss_pred CCCCCEEEEEcCCcHHHHHHHH-HHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~l-A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 59 (499)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.. ..+.+...++. +.++++..
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e 174 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLE 174 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEE
Confidence 4677777666555544333322 445667666666544 56666666653 55666543
No 87
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=26.61 E-value=1.7e+02 Score=26.70 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=38.1
Q ss_pred CCCCCEEEEEcC-CcHHHHHHHHHHHHhCcE-EEEcCCCCCHHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMP-MTVRAVIIYLAIILAGYV-VVSIADSFAAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 59 (499)
+++||+|+|+.. ..+-.++..+|-. .|+. ++..+.....++....++..++..++..
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 679999999997 4566666666654 5774 4444444445555566778888877753
No 88
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=26.26 E-value=2.4e+02 Score=28.06 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=52.3
Q ss_pred EEEeecCcc--ccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecch---HH---HHHHHccCCCCccc
Q 010854 171 VYCWPTNLG--WVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVP---SL---VKAWRNTNCLEGLD 241 (499)
Q Consensus 171 ~~l~~~p~~--~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P---~~---l~~l~~~~~~~~~~ 241 (499)
+++...+.. |..|... ...--..|..++.+.....++.+.+.++++++..+.+.- +. +..+++.....+.
T Consensus 100 kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g~- 178 (579)
T 3bul_A 100 KMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGF- 178 (579)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTC-
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcCC-
Confidence 444444333 7777665 444456888998888778889999999999999875432 11 2222222222222
Q ss_pred ccceeEEEeecCCCChhh
Q 010854 242 WTKIRSFASTGETSNVDD 259 (499)
Q Consensus 242 l~~l~~i~~~G~~l~~~~ 259 (499)
.+ .+++||..++.+.
T Consensus 179 --~i-~ViVGGa~~~~~~ 193 (579)
T 3bul_A 179 --TI-PLLIGGATTSKAH 193 (579)
T ss_dssp --CS-CEEEESTTCCHHH
T ss_pred --CC-eEEEEccccchhh
Confidence 23 3677887776653
No 89
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=25.65 E-value=1.8e+02 Score=28.00 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHH------hCcEEEEcCCCCC-H------HHHHHHhhcCCeeEEEecc
Q 010854 1 MFSKGDAIAIDMPMTVRAVIIYLAIIL------AGYVVVSIADSFA-A------REIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 1 ~v~~gd~V~i~~~~~~~~~~~~lA~~~------~G~~~v~l~~~~~-~------~~l~~~l~~~~~~~ii~~~ 60 (499)
|+.+|++|++.+.-+.|+++++..+.. .-..++.++..+. + +....+.+..++...+.+-
T Consensus 14 l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~ 86 (464)
T 3a2k_A 14 LLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQI 86 (464)
T ss_dssp SSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 468899999999999999999888776 2467778887775 2 3456667777888777654
No 90
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=25.44 E-value=1.5e+02 Score=26.84 Aligned_cols=57 Identities=18% Similarity=0.115 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCC----CCHHHHHHHhhcCCeeEEEecc
Q 010854 3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADS----FAAREIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~~~~~ii~~~ 60 (499)
++||.|.+.-+..+.+......+.+.|+.++.++.. ...+++...++. +.++++...
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~ 146 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQH 146 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCS
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEEC
Confidence 577877777776666655554444556665554432 356677766653 455555443
No 91
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.62 E-value=2.2e+02 Score=26.16 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcC---CeeEEEecc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVS---KAKGIFTQD 60 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~ii~~~ 60 (499)
+++||.|.+..|....+.- ++...|+.+++++. ...+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 5789999998887766543 45567888887754 5778888888775 567777654
No 92
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=24.47 E-value=2.5e+02 Score=25.36 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcC--CC----CCHHHHHHHhhc----CCeeEEEecc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIA--DS----FAAREIATRLRV----SKAKGIFTQD 60 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~----~~~~~l~~~l~~----~~~~~ii~~~ 60 (499)
+++||.|.+.-+....+... +...|+.++.++ .. ...+++...+++ -++++++...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46899998888777665544 566787776665 22 367888888874 3566666554
No 93
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=24.46 E-value=2.3e+02 Score=22.80 Aligned_cols=63 Identities=8% Similarity=0.080 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCccceeeeEEEeCCCC-----CCceEEEEEEEe--cCCCCCCHHHHHHHHHHHHHhhcCCceee
Q 010854 397 VEIERVCDQADESILETAAISVSPAG-----GGPEVLVIFVVL--KKGFTSQPDKLKMIFSKAIQSKLNPLFKV 463 (499)
Q Consensus 397 ~~iE~~l~~~~~~v~~~~v~~~~~~~-----~~~~~~~~~v~~--~~~~~~~~~~l~~~~~~~~~~~l~~~~~p 463 (499)
.|+++.|. .+++|..+-|..+-++. .....+.|-|++ .++. ...+..+.|+..+...++. ..|
T Consensus 91 ~ELartI~-~i~gV~~ArVhl~lP~~~~~f~~~~~~~sASV~l~~~~g~--l~~~qv~~I~~LVa~SV~g-L~~ 160 (170)
T 2y9j_Y 91 QRLEQSLQ-TMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGS--PLAHQISDIKRFLKNSFAD-VDY 160 (170)
T ss_dssp HHHHHHHT-TSTTEEEEEEEEEECCCCCBTTBCCCCEEEEEEEEECTTC--CCGGGHHHHHHHHHHHSTT-CCG
T ss_pred HHHHHHHH-cCCCeeEEEEEEEcCCCcCcccccCCCCcEEEEEEECCCC--CCHHHHHHHHHHHHHhcCC-CCc
Confidence 57999995 99999999887664433 111345555554 4453 3345555677777777765 444
No 94
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=24.27 E-value=1.3e+02 Score=27.52 Aligned_cols=56 Identities=18% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCC--C--CCHHHHHHHhhcCCeeEEEec
Q 010854 3 SKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIAD--S--FAAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 3 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~--~~~~~l~~~l~~~~~~~ii~~ 59 (499)
++||.|.+.-+..+.+.-....+...|+.++.++. . ...+++...++. ++++++..
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 145 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQ 145 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEe
Confidence 45666666655554443333322234555444432 1 345666655543 44554443
No 95
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.43 E-value=1.2e+02 Score=33.70 Aligned_cols=81 Identities=11% Similarity=-0.037 Sum_probs=61.7
Q ss_pred EecchhhHHHhhhcc---eeccCcCCcEEEeecCccccchhhhhhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEec
Q 010854 147 PWTQLSSIRCTAEGW---AHIDLKVGDVYCWPTNLGWVMGPVILFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGT 223 (499)
Q Consensus 147 ~~s~~~~~~~~~~~~---~~~~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~ 223 (499)
.+|+..+...+..+. ...++++++++...++-+.. ..+.+++.+..|+..+.+++....+.+...++..++..++.
T Consensus 489 ~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~-~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~ 567 (1304)
T 2vsq_A 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLE-LVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLT 567 (1304)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHH-HHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEE
Confidence 467777665554444 34588999999887776532 23448899999999999988888889999999999999988
Q ss_pred chHHH
Q 010854 224 VPSLV 228 (499)
Q Consensus 224 ~P~~l 228 (499)
.+...
T Consensus 568 ~~~~~ 572 (1304)
T 2vsq_A 568 HQEMK 572 (1304)
T ss_dssp CSTTC
T ss_pred Ccchh
Confidence 76543
No 96
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=22.96 E-value=1.7e+02 Score=27.78 Aligned_cols=59 Identities=3% Similarity=0.109 Sum_probs=43.7
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHH-----hC--cEEEEcCCCCC------HHHHHHHhhcCCeeEEEecc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIIL-----AG--YVVVSIADSFA------AREIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~-----~G--~~~v~l~~~~~------~~~l~~~l~~~~~~~ii~~~ 60 (499)
+++|++|++.+.-+.|+++++..+.. .| ..++.++..+. .+....+.+..++...+.+-
T Consensus 10 l~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~ 81 (433)
T 1ni5_A 10 LLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV 81 (433)
T ss_dssp HTTCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cCCCCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEe
Confidence 57899999999999999999888876 44 45677776654 23455666777777766543
No 97
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=22.35 E-value=2.4e+02 Score=25.37 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHh----C---cEEEEcCCCCC---H---HHHHHHhhcCCeeEEEecc
Q 010854 1 MFSKGDAIAIDMPMTVRAVIIYLAIILA----G---YVVVSIADSFA---A---REIATRLRVSKAKGIFTQD 60 (499)
Q Consensus 1 ~v~~gd~V~i~~~~~~~~~~~~lA~~~~----G---~~~v~l~~~~~---~---~~l~~~l~~~~~~~ii~~~ 60 (499)
++++|++|++.+.-+.|+.+++..+.+. | ..++.++.... . +....+.+..+....+.+-
T Consensus 20 l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~ 92 (317)
T 1wy5_A 20 IFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKE 92 (317)
T ss_dssp SCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEE
Confidence 3678999999999999999998888764 3 56677877664 2 3355566667777766653
No 98
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=22.28 E-value=2.1e+02 Score=26.21 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=42.0
Q ss_pred CCCCCEEEEEcCC--cHHHHHHHHHHHHhCcEEEEcCCCCCHH-----------------------HHHHHhhcCCeeEE
Q 010854 2 FSKGDAIAIDMPM--TVRAVIIYLAIILAGYVVVSIADSFAAR-----------------------EIATRLRVSKAKGI 56 (499)
Q Consensus 2 v~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~-----------------------~l~~~l~~~~~~~i 56 (499)
++++|++..++|- ..-.....++++..|+.+++.. ..+. .+...+++.++..+
T Consensus 132 ~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l 209 (369)
T 3hgu_A 132 GRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209 (369)
T ss_dssp TCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 5789999999986 3333444555588999655543 3444 67779999999999
Q ss_pred Eecccc
Q 010854 57 FTQDFI 62 (499)
Q Consensus 57 i~~~~~ 62 (499)
+..+.+
T Consensus 210 ~~~Ps~ 215 (369)
T 3hgu_A 210 VTTPPV 215 (369)
T ss_dssp EECHHH
T ss_pred EeCHHH
Confidence 987754
No 99
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=22.23 E-value=2.2e+02 Score=29.18 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=40.6
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCC--------------CHHHHHHHhhcC-Cee----EEEeccc
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSF--------------AAREIATRLRVS-KAK----GIFTQDF 61 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~--------------~~~~l~~~l~~~-~~~----~ii~~~~ 61 (499)
++|||.|.+--++.....- |+...|+.++.+++.. +.+.++..++.. +.+ ++++++.
T Consensus 232 ~~pGD~VLv~r~~H~S~~~---~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn 307 (715)
T 3n75_A 232 APAGSTILIDRNCHKSLTH---LMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST 307 (715)
T ss_dssp CCTTCEEEEESSCCHHHHH---HHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSC
T ss_pred CCCCCEEEECCCccHHHHH---HHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECCC
Confidence 6899999988877765553 6778999988887531 588888888753 333 5555553
No 100
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.30 E-value=2e+02 Score=19.51 Aligned_cols=46 Identities=15% Similarity=0.067 Sum_probs=28.9
Q ss_pred hHHHHHHHhhcCccceeeeEEEeCCCCCCceEEEEEEEecCCCCCCHHHHHHHHHHHH
Q 010854 396 SVEIERVCDQADESILETAAISVSPAGGGPEVLVIFVVLKKGFTSQPDKLKMIFSKAI 453 (499)
Q Consensus 396 ~~~iE~~l~~~~~~v~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 453 (499)
..++++.+. ..|+|.+|..+..+ .-..+.|..+ +.+++.+.+.+.+
T Consensus 15 ~~~~~~~l~-~~peV~e~~~vtG~------~D~ll~v~~~-----d~~~l~~~i~~~l 60 (83)
T 2cvi_A 15 EREVMEKLL-AMPEVKEAYVVYGE------YDLIVKVETD-----TLKDLDQFITEKI 60 (83)
T ss_dssp HHHHHHHHH-TSTTEEEEEECBSS------CSEEEEEEES-----SHHHHHHHHHTTG
T ss_pred HHHHHHHHh-CCCCeeEEEEEccc------CCEEEEEEEC-----CHHHHHHHHHHHh
Confidence 368888895 89999999887543 2233344332 5566666654333
No 101
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=20.99 E-value=2.1e+02 Score=25.92 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHhCcEEEEcCCCCCHHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTVRAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~ 59 (499)
+++||.|.+.-|....+.- ++...|+.++.++ ...+++...++. ++++++..
T Consensus 110 ~~~gd~vl~~~p~~~~~~~---~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~~ 161 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCYKN---FIRFLGAKPVFCD--FTVESLEEALSD-KTKAIIIN 161 (370)
T ss_dssp CCTTCEEEEESSCCTHHHH---HHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEEE
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEEc
Confidence 4688988888877655433 3556788877776 677888887765 56666553
No 102
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=20.98 E-value=3.1e+02 Score=24.64 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCCcH---HHHHHHHHH-HHhCcEEEEcCCC--------CC----HHHHHHHhhcCCeeEEEec
Q 010854 2 FSKGDAIAIDMPMTV---RAVIIYLAI-ILAGYVVVSIADS--------FA----AREIATRLRVSKAKGIFTQ 59 (499)
Q Consensus 2 v~~gd~V~i~~~~~~---~~~~~~lA~-~~~G~~~v~l~~~--------~~----~~~l~~~l~~~~~~~ii~~ 59 (499)
+++||+|+|+.|.+. +.+-.-... -..|..++.-+.. -+ .+++..++.+-.+++|++.
T Consensus 14 L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 87 (311)
T 1zl0_A 14 QPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCL 87 (311)
T ss_dssp CCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEES
T ss_pred CCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEc
Confidence 789999999999883 222222222 2356666543211 12 3566667777777777764
No 103
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.93 E-value=3.6e+02 Score=22.30 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=51.2
Q ss_pred EEEeecCc--cccchhhh-hhhhhccCcEEEecCCCCChhHHHHHHHHhCCeEEecchH------HHHHHHccCCCCccc
Q 010854 171 VYCWPTNL--GWVMGPVI-LFSSFLNGATLALYQGSPLERSFGKFVQDAGVTVLGTVPS------LVKAWRNTNCLEGLD 241 (499)
Q Consensus 171 ~~l~~~p~--~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~------~l~~l~~~~~~~~~~ 241 (499)
+++...+. .|..|... ...--..|..++.+....+++.+.+.++++++..+..+-. .+..+.+..+..+.
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~- 168 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGL- 168 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTC-
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCC-
Confidence 34443433 37777665 3334467889998887778899999999999988754321 23333322221111
Q ss_pred ccceeEEEeecCCCChh
Q 010854 242 WTKIRSFASTGETSNVD 258 (499)
Q Consensus 242 l~~l~~i~~~G~~l~~~ 258 (499)
-+.+ .+++||...+++
T Consensus 169 ~~~~-~v~vGG~~~~~~ 184 (210)
T 1y80_A 169 RDRV-KVIVGGAPLSQD 184 (210)
T ss_dssp GGGC-EEEEESTTCCHH
T ss_pred CCCC-eEEEECCCCCHH
Confidence 0123 367788777654
Done!