BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010855
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
+++++PC+ + +++ + +GS +Y +W + Y S ++E+ + E+LL+ +
Sbjct: 461 VASLTPCLMGYGEALTKMKGKVTAPEGS-VYHEWCETYASSWYREAMDEGEKLLNHILET 519
Query: 152 LTGEELEVIKKLYYKAIKLHVNFFAA 177
E+L+ + +Y + +L NF+ A
Sbjct: 520 YPPEQLDTLVTIYAEVCELETNFWTA 545
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
L+A+ PC L+ + ++ LL+ D G +Y+KWI Y F++ Q EE +++ L
Sbjct: 156 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQ---QVEEQINRFDEL 209
Query: 152 LTGEELEVIKKL 163
EV K+
Sbjct: 210 AENSTEEVRAKM 221
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
L+A+ PC L+ + ++ LL+ D G +Y+KWI Y F++ Q EE +++ L
Sbjct: 156 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQ---QVEEQINRFDEL 209
Query: 152 LTGEELEVIKKL 163
EV K+
Sbjct: 210 AENSTEEVRAKM 221
>pdb|1TO9|B Chain B, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
L+A+ PC L+ + ++ LL+ D G +Y+KWI Y F++ Q EE +++ L
Sbjct: 153 LAALLPCYWLYYEVGEK---LLHXDPGHPIYQKWIGTYGGDWFRQ---QVEEQINRFDEL 206
Query: 152 LTGEELEVIKK 162
EV K
Sbjct: 207 AENSTEEVRAK 217
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
L+A+ PC L+ + ++ LL+ D G +Y+KWI Y F++ Q EE +++ L
Sbjct: 131 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQ---QVEEQINRFDEL 184
Query: 152 LTGEELEVIKK 162
EV K
Sbjct: 185 AENSTEEVRAK 195
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
L+A+ PC L+ + ++ LL+ D G +Y+KWI Y F++ Q EE +++ L
Sbjct: 153 LAALLPCYWLYYEVGEK---LLHCDPGHPIYQKWIGTYGGDWFRQ---QVEEQINRFDEL 206
Query: 152 LTGEELEVIKK 162
EV K
Sbjct: 207 AENSTEEVRAK 217
>pdb|4FN6|A Chain A, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|B Chain B, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|C Chain C, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
pdb|4FN6|D Chain D, Structural Characterization Of Thiaminase Type Ii Tena
From Staphylococcus Aureus
Length = 229
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 88 AAYTLSAISPCMRLFEVIAKEIQA--LLNPDDGSHLYKKWIDYYCSQSFQESALQTEELL 145
A YT++A++P ++ +AK Q+ LN + + KW D+Y ++ + E L+
Sbjct: 127 AIYTIAAMAPXPYIYAELAKRSQSDHKLNREKDT---AKWFDFYSTE-MDDIINVFESLM 182
Query: 146 DKLSVLLTGEELEVIKKLYYKAIKLHVNFF 175
+KL+ ++ +ELE +K+++ ++ FF
Sbjct: 183 NKLAESMSDKELEQVKQVFLESCIHERRFF 212
>pdb|2RD3|A Chain A, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
pdb|2RD3|D Chain D, Crystal Structure Of Tena Homologue (Hp1287) From
Helicobacter Pylori
Length = 223
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 93 SAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLL 152
+A+ C + VIA+ + + N + + Y WI Y S+ FQ LLD L++
Sbjct: 136 AAVLSCGWSYLVIAQNLSQIPNALEHA-FYGHWIKGYSSKEFQACVNWNINLLDSLTLAS 194
Query: 153 TGEELEVIKKLY 164
+ +E+E +K+++
Sbjct: 195 SKQEIEKLKEIF 206
>pdb|3IBX|A Chain A, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
pdb|3IBX|D Chain D, Crystal Structure Of F47y Variant Of Tena (Hp1287) From
Helicobacter Pylori
Length = 221
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 93 SAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLL 152
+A+ C + VIA+ + + N + + Y WI Y S+ FQ LLD L++
Sbjct: 134 AAVLSCGWSYLVIAQNLSQIPNALEHA-FYGHWIKGYSSKEFQACVNWNINLLDSLTLAS 192
Query: 153 TGEELEVIKKLY 164
+ +E+E +K+++
Sbjct: 193 SKQEIEKLKEIF 204
>pdb|3ACL|A Chain A, Crystal Structure Of Human Pirin In Complex With Triphenyl
Compound
Length = 296
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 116 DDGSHLYKKWIDYYCSQSF---QESALQTEELL----DKLSV-LLTGEELEVIKKLYYKA 167
++ +H + W++ S+ Q L++EE+ D ++V +++GE L + K+Y +
Sbjct: 114 EEPAHGLQLWVNLRSSEKMVEPQYQELKSEEIPKPSKDGVTVAVISGEALGIKSKVYTRT 173
Query: 168 IKLHVNFFAAQPVKQQTTVPLSWVK--DPVEGHLTLFCDFDWTCTAFDSSSILAELAIVT 225
L+++F K +P W + G + + D +++L E V
Sbjct: 174 PTLYLDFKLDPGAKHSQPIPKGWTSFIYTISGDVYIGPDDAQQKIEPHHTAVLGEGDSVQ 233
Query: 226 AQKSDPDQS 234
+ DP +S
Sbjct: 234 VENKDPKRS 242
>pdb|3NO6|A Chain A, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|B Chain B, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|C Chain C, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
pdb|3NO6|D Chain D, Crystal Structure Of A Putative Thiaminase Ii (Se1693)
From Staphylococcus Epidermidis Atcc 12228 At 1.65 A
Resolution
Length = 248
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 88 AAYTLSAISPCMRLFEVIAKEIQALLNPD-DGSHLYKKWIDYYCSQSFQESALQTEELLD 146
AA+T++A +PC ++ VI K +A +P + + KW +Y ++ E ++L D
Sbjct: 146 AAFTIAAXAPCPYVYAVIGK--RAXEDPKLNKESVTSKWFQFYSTEX-DELVDVFDQLXD 202
Query: 147 KLSVLLTGEELEVIKKLYYKAIKLHVNFF 175
+L+ + E + IK+ + ++ +FF
Sbjct: 203 RLTKHCSETEKKEIKENFLQSTIHERHFF 231
>pdb|2WZG|A Chain A, Legionella Glucosyltransferase (Lgt1) Crystal Structure
pdb|3JT1|A Chain A, Legionella Pneumophila Glucosyltransferase Lgt1, Udp-bound
Form
Length = 525
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 238 LTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAEFEYEGLCEALKQLAYFEKNEN 297
L S DL +D L + T + ++ + A+ + +G +A K++ F K
Sbjct: 20 LNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQELLKG-ADAQKKIESFLKGAI 78
Query: 298 SRVVQSGVLKGLNLEDIKW 316
V+ GV+KGL +I W
Sbjct: 79 KNVIHPGVIKGLTPNEINW 97
>pdb|2GM7|A Chain A, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|B Chain B, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|C Chain C, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM7|D Chain D, Tena HomologTHI-4 Thiaminase From Pyrobaculum Aerophilum
pdb|2GM8|A Chain A, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|B Chain B, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|C Chain C, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
pdb|2GM8|D Chain D, Tena HomologTHI-4 Thiaminase Complexed With Product
4-Amino-5- Hydroxymethyl-2-Methylpyrimidine
Length = 221
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 92 LSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVL 151
++A+ PC + IA+ L ++ H+YKKW Y S ++ + +LD S
Sbjct: 137 MAALLPCFWSYAEIAERHGGKLR-ENPVHVYKKWASVYLSPEYRGLVERLRAVLD--SSG 193
Query: 152 LTGEEL 157
L+ EEL
Sbjct: 194 LSAEEL 199
>pdb|3JSZ|A Chain A, Legionella Pneumophila Glucosyltransferase Lgt1 N293a With
Udp-Glc
Length = 525
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 238 LTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAEFEYEGLCEALKQLAYFEKNEN 297
L S DL +D L + T + ++ + A+ + +G +A K++ F K
Sbjct: 20 LNHTSEIDLHTLFDNLKSNLTLGSIEHLQEGSVTYAIIQELLKG-ADAQKKIESFLKGAI 78
Query: 298 SRVVQSGVLKGLNLEDIKW 316
V+ GV+KGL +I W
Sbjct: 79 KNVIHPGVIKGLTPNEINW 97
>pdb|3MVU|A Chain A, Crystal Structure Of A Tena Family Transcription Regulator
(Tm1040_3656) From Silicibacter Sp. Tm1040 At 1.80 A
Resolu
Length = 226
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 97 PCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEE 156
PC+ + I K + A + S LY WID Y +Q + LLD G E
Sbjct: 140 PCVXGYGEIGKRLTA----EATSTLYGDWIDTYGGDDYQAACKAVGTLLDDALERRLGAE 195
Query: 157 L------EVIKKLYYKAIKLHVNFF 175
+ + ++ A +L V F+
Sbjct: 196 FTSSPRWSRLCQTFHTATELEVGFW 220
>pdb|3LQC|B Chain B, X-Ray Crystal Structure Of Oxidized Xrcc1 Bound To Dna Pol
B Thumb Domain
Length = 200
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 352 CGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDIL 404
CG R A +SGD++ H N ES ++++++ L+K++ D L
Sbjct: 37 CGSFRRGAESSGDMDVLLTHPN--FTSESSKQPKLLHRVVEQLQKVRFITDTL 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,473,555
Number of Sequences: 62578
Number of extensions: 578702
Number of successful extensions: 1561
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1550
Number of HSP's gapped (non-prelim): 35
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)