Query 010855
Match_columns 499
No_of_seqs 313 out of 2050
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:20:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0819 TenA Putative transcri 100.0 6.9E-33 1.5E-37 264.7 15.9 155 7-181 59-217 (218)
2 PRK14713 multifunctional hydro 100.0 2E-28 4.4E-33 265.7 15.8 154 4-181 372-528 (530)
3 PRK09517 multifunctional thiam 100.0 5.3E-28 1.1E-32 271.7 15.5 149 7-181 602-752 (755)
4 TIGR01544 HAD-SF-IE haloacid d 99.9 2.3E-26 5E-31 227.2 17.9 229 195-455 19-262 (277)
5 PF03070 TENA_THI-4: TENA/THI- 99.9 2.2E-27 4.7E-32 227.7 10.1 154 7-180 52-209 (210)
6 PTZ00347 phosphomethylpyrimidi 99.9 4.5E-26 9.8E-31 246.3 17.3 172 7-208 69-242 (504)
7 COG4359 Uncharacterized conser 99.9 2.8E-25 6.1E-30 201.1 12.8 195 197-458 2-202 (220)
8 COG0560 SerB Phosphoserine pho 99.9 2.1E-24 4.5E-29 207.6 17.3 199 196-454 3-202 (212)
9 TIGR03333 salvage_mtnX 2-hydro 99.9 5E-23 1.1E-27 198.5 14.7 192 200-458 1-199 (214)
10 PRK11133 serB phosphoserine ph 99.9 7.6E-22 1.6E-26 200.9 18.4 192 196-447 108-299 (322)
11 PRK09552 mtnX 2-hydroxy-3-keto 99.9 9.2E-22 2E-26 190.3 16.8 194 198-458 3-203 (219)
12 PF06888 Put_Phosphatase: Puta 99.9 1.1E-20 2.4E-25 183.1 16.1 128 307-440 56-198 (234)
13 TIGR01545 YfhB_g-proteo haloac 99.8 1.4E-19 3E-24 174.1 19.7 132 303-445 67-208 (210)
14 TIGR01488 HAD-SF-IB Haloacid D 99.8 3E-20 6.6E-25 172.7 13.8 121 304-431 53-177 (177)
15 TIGR00338 serB phosphoserine p 99.8 1.5E-19 3.2E-24 174.3 17.1 137 305-448 68-204 (219)
16 PF05822 UMPH-1: Pyrimidine 5' 99.8 3.3E-20 7.1E-25 179.3 12.4 200 242-455 15-230 (246)
17 TIGR02137 HSK-PSP phosphoserin 99.8 1.4E-19 3.1E-24 173.0 15.9 129 307-450 53-182 (203)
18 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 4.5E-19 9.7E-24 168.7 18.6 134 303-443 61-202 (202)
19 KOG3128 Uncharacterized conser 99.8 4.7E-20 1E-24 174.9 7.4 228 194-455 34-279 (298)
20 KOG1615 Phosphoserine phosphat 99.8 2E-19 4.4E-24 164.7 9.8 176 197-433 15-194 (227)
21 PRK11590 hypothetical protein; 99.8 2.3E-17 5.1E-22 158.7 19.0 129 306-445 71-209 (211)
22 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 2.5E-17 5.4E-22 156.1 18.0 134 308-449 66-200 (201)
23 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 2.4E-17 5.3E-22 154.3 17.0 122 308-439 58-187 (188)
24 PLN02954 phosphoserine phospha 99.7 5.7E-17 1.2E-21 156.8 15.4 180 197-437 11-194 (224)
25 KOG3120 Predicted haloacid deh 99.7 1.4E-16 3E-21 148.9 13.5 188 197-440 12-211 (256)
26 PRK13582 thrH phosphoserine ph 99.6 2.8E-14 6.2E-19 136.0 16.6 119 308-441 54-173 (205)
27 PF12710 HAD: haloacid dehalog 99.6 4.2E-15 9.2E-20 139.6 10.6 99 322-429 85-192 (192)
28 KOG2598 Phosphomethylpyrimidin 99.6 1.8E-14 3.8E-19 146.1 14.9 150 7-180 369-521 (523)
29 PLN02177 glycerol-3-phosphate 99.4 4.2E-12 9.1E-17 136.2 19.7 122 304-440 85-216 (497)
30 PRK08238 hypothetical protein; 99.2 1.4E-10 3E-15 124.4 16.4 116 320-458 70-185 (479)
31 PRK13222 phosphoglycolate phos 99.1 1.7E-08 3.6E-13 97.4 20.1 100 320-438 91-193 (226)
32 TIGR01449 PGP_bact 2-phosphogl 99.0 1.7E-08 3.6E-13 96.5 18.9 98 320-436 83-182 (213)
33 cd01427 HAD_like Haloacid deha 99.0 2.4E-09 5.1E-14 93.4 9.3 111 318-433 20-134 (139)
34 PRK10826 2-deoxyglucose-6-phos 99.0 1.7E-08 3.8E-13 97.5 15.9 101 319-438 89-191 (222)
35 TIGR01428 HAD_type_II 2-haloal 98.9 7.9E-08 1.7E-12 91.1 19.3 103 318-439 88-193 (198)
36 PRK13288 pyrophosphatase PpaX; 98.9 2.8E-08 6.1E-13 95.4 16.2 97 319-434 79-177 (214)
37 TIGR03351 PhnX-like phosphonat 98.9 2.8E-08 6.2E-13 95.7 15.7 98 320-435 85-186 (220)
38 PLN03243 haloacid dehalogenase 98.9 2.8E-08 6E-13 98.9 15.4 96 320-434 107-204 (260)
39 PF00702 Hydrolase: haloacid d 98.9 7.5E-09 1.6E-13 98.5 10.4 89 320-432 125-215 (215)
40 TIGR01454 AHBA_synth_RP 3-amin 98.9 3.4E-08 7.4E-13 94.2 14.5 99 319-436 72-172 (205)
41 PRK13226 phosphoglycolate phos 98.9 6.2E-08 1.4E-12 94.3 15.3 97 320-435 93-191 (229)
42 PRK13223 phosphoglycolate phos 98.9 1.1E-07 2.4E-12 95.1 17.5 95 320-433 99-195 (272)
43 TIGR02253 CTE7 HAD superfamily 98.8 2.3E-07 5E-12 89.3 17.6 101 320-439 92-196 (221)
44 PRK13225 phosphoglycolate phos 98.8 1.2E-07 2.6E-12 95.0 16.1 94 319-433 139-233 (273)
45 TIGR02009 PGMB-YQAB-SF beta-ph 98.8 1.6E-07 3.4E-12 87.6 15.3 95 320-435 86-182 (185)
46 PLN02575 haloacid dehalogenase 98.8 9.8E-08 2.1E-12 99.2 14.7 100 320-438 214-316 (381)
47 TIGR01422 phosphonatase phosph 98.8 2.9E-07 6.3E-12 90.8 17.2 98 319-434 96-196 (253)
48 PF13419 HAD_2: Haloacid dehal 98.8 7.8E-08 1.7E-12 87.8 12.2 97 319-434 74-172 (176)
49 PRK13478 phosphonoacetaldehyde 98.7 4.9E-07 1.1E-11 90.1 17.8 97 319-433 98-197 (267)
50 PRK14988 GMP/IMP nucleotidase; 98.7 4.9E-07 1.1E-11 87.9 17.1 98 318-434 89-188 (224)
51 PRK11587 putative phosphatase; 98.7 1.7E-07 3.6E-12 90.5 13.6 101 319-438 80-182 (218)
52 PLN02770 haloacid dehalogenase 98.7 2.1E-07 4.5E-12 91.9 14.3 98 320-436 106-205 (248)
53 TIGR01990 bPGM beta-phosphoglu 98.7 3.6E-07 7.8E-12 85.2 14.5 94 320-434 85-180 (185)
54 PRK09449 dUMP phosphatase; Pro 98.7 2E-06 4.4E-11 83.0 20.0 100 320-438 93-196 (224)
55 TIGR02252 DREG-2 REG-2-like, H 98.7 1.7E-06 3.6E-11 82.3 18.7 93 321-433 104-199 (203)
56 PRK09456 ?-D-glucose-1-phospha 98.7 1.8E-06 3.9E-11 82.1 17.9 109 321-448 83-195 (199)
57 PLN02940 riboflavin kinase 98.6 7.4E-07 1.6E-11 93.5 16.6 100 319-437 90-193 (382)
58 TIGR01549 HAD-SF-IA-v1 haloaci 98.6 2.4E-07 5.3E-12 84.0 9.9 91 320-432 62-154 (154)
59 COG0546 Gph Predicted phosphat 98.6 1.4E-06 3E-11 84.4 15.7 94 321-433 88-183 (220)
60 TIGR01497 kdpB K+-transporting 98.6 2.6E-07 5.7E-12 102.6 11.2 97 321-445 445-541 (675)
61 PRK01122 potassium-transportin 98.6 3.1E-07 6.8E-12 102.2 11.5 96 321-444 444-539 (679)
62 TIGR02254 YjjG/YfnB HAD superf 98.6 8.7E-06 1.9E-10 78.2 19.7 99 320-438 95-198 (224)
63 PRK06698 bifunctional 5'-methy 98.5 7.7E-07 1.7E-11 95.7 13.3 93 320-434 328-422 (459)
64 PRK14010 potassium-transportin 98.5 4E-07 8.7E-12 101.3 11.1 96 321-444 440-535 (673)
65 PLN02499 glycerol-3-phosphate 98.5 3E-06 6.6E-11 89.9 16.9 119 303-437 70-196 (498)
66 PLN02779 haloacid dehalogenase 98.5 9.9E-06 2.1E-10 81.7 19.1 102 321-437 143-244 (286)
67 TIGR01672 AphA HAD superfamily 98.5 2E-06 4.4E-11 84.2 13.3 90 321-433 113-205 (237)
68 PHA02597 30.2 hypothetical pro 98.5 1.6E-06 3.4E-11 82.2 12.1 101 319-438 71-173 (197)
69 PRK10563 6-phosphogluconate ph 98.5 6.7E-06 1.4E-10 79.3 16.6 96 320-437 86-184 (221)
70 COG2217 ZntA Cation transport 98.5 6E-07 1.3E-11 100.2 10.0 95 320-442 535-629 (713)
71 TIGR01511 ATPase-IB1_Cu copper 98.4 1E-06 2.2E-11 97.0 11.2 96 320-444 403-498 (562)
72 TIGR01993 Pyr-5-nucltdase pyri 98.4 8.8E-06 1.9E-10 76.2 15.6 98 320-435 82-181 (184)
73 TIGR01656 Histidinol-ppas hist 98.4 1.2E-06 2.5E-11 79.5 9.3 104 322-438 27-145 (147)
74 TIGR01509 HAD-SF-IA-v3 haloaci 98.4 1.5E-05 3.2E-10 73.9 16.2 93 321-433 84-178 (183)
75 TIGR01548 HAD-SF-IA-hyp1 haloa 98.4 1.2E-05 2.6E-10 76.2 15.5 89 323-431 107-197 (197)
76 PRK15122 magnesium-transportin 98.3 1.9E-06 4.2E-11 99.6 10.9 114 321-444 549-669 (903)
77 TIGR01524 ATPase-IIIB_Mg magne 98.3 2.5E-06 5.5E-11 98.4 11.7 115 320-444 513-634 (867)
78 PRK10517 magnesium-transportin 98.3 2.6E-06 5.5E-11 98.5 11.2 115 320-444 548-669 (902)
79 PRK05446 imidazole glycerol-ph 98.3 4.4E-06 9.5E-11 86.4 11.4 103 321-438 29-148 (354)
80 TIGR02247 HAD-1A3-hyp Epoxide 98.3 1.6E-05 3.4E-10 76.1 14.3 107 320-444 92-202 (211)
81 TIGR01647 ATPase-IIIA_H plasma 98.3 2.8E-06 6E-11 96.7 10.3 114 321-444 441-566 (755)
82 PRK10725 fructose-1-P/6-phosph 98.3 2.4E-05 5.3E-10 73.2 15.0 94 320-434 86-181 (188)
83 PRK11009 aphA acid phosphatase 98.2 1.1E-05 2.3E-10 79.1 11.9 96 320-438 112-211 (237)
84 TIGR01517 ATPase-IIB_Ca plasma 98.2 5.4E-06 1.2E-10 96.6 11.5 114 321-443 578-700 (941)
85 TIGR01512 ATPase-IB2_Cd heavy 98.2 4.2E-06 9E-11 91.8 9.5 96 320-443 360-457 (536)
86 PRK10748 flavin mononucleotide 98.2 0.0001 2.2E-09 72.2 17.9 95 320-439 111-209 (238)
87 PLN02919 haloacid dehalogenase 98.2 4.8E-05 1E-09 89.5 18.2 99 322-439 161-263 (1057)
88 TIGR01523 ATPase-IID_K-Na pota 98.2 6.2E-06 1.4E-10 96.7 10.7 114 321-443 645-777 (1053)
89 PRK11033 zntA zinc/cadmium/mer 98.2 7.2E-06 1.6E-10 93.1 10.7 95 320-444 566-660 (741)
90 PRK10671 copA copper exporting 98.2 1.3E-05 2.8E-10 92.4 12.9 94 321-442 649-742 (834)
91 TIGR01525 ATPase-IB_hvy heavy 98.1 1.4E-05 3E-10 88.1 11.1 98 320-444 382-479 (556)
92 PRK08942 D,D-heptose 1,7-bisph 98.1 1.4E-05 3E-10 74.9 9.5 103 321-436 28-144 (181)
93 TIGR01522 ATPase-IIA2_Ca golgi 98.1 1.5E-05 3.2E-10 92.4 11.5 108 322-439 528-644 (884)
94 TIGR01670 YrbI-phosphatas 3-de 98.1 1.6E-05 3.4E-10 72.8 9.4 86 330-441 36-121 (154)
95 TIGR02726 phenyl_P_delta pheny 98.0 1.8E-05 4E-10 73.5 8.3 91 331-447 43-134 (169)
96 KOG0207 Cation transport ATPas 98.0 2.2E-05 4.8E-10 87.5 10.1 94 321-442 722-815 (951)
97 TIGR01116 ATPase-IIA1_Ca sarco 98.0 3E-05 6.4E-10 90.2 11.4 113 321-444 536-662 (917)
98 COG4030 Uncharacterized protei 98.0 2.9E-05 6.3E-10 73.8 9.0 120 306-432 66-226 (315)
99 PLN02811 hydrolase 97.9 0.00016 3.5E-09 69.8 13.4 103 319-437 75-183 (220)
100 PRK09484 3-deoxy-D-manno-octul 97.9 4.9E-05 1.1E-09 71.5 8.5 87 331-443 57-143 (183)
101 COG4087 Soluble P-type ATPase 97.8 8.5E-05 1.8E-09 64.9 8.5 91 322-439 30-120 (152)
102 TIGR01691 enolase-ppase 2,3-di 97.8 0.00013 2.9E-09 70.8 10.9 98 320-434 93-191 (220)
103 TIGR00213 GmhB_yaeD D,D-heptos 97.8 0.00011 2.4E-09 68.6 9.9 108 321-435 25-146 (176)
104 TIGR01106 ATPase-IIC_X-K sodiu 97.8 8.1E-05 1.8E-09 87.3 11.0 115 321-444 567-716 (997)
105 TIGR01493 HAD-SF-IA-v2 Haloaci 97.8 8.5E-05 1.8E-09 68.7 9.0 88 318-431 86-175 (175)
106 TIGR01533 lipo_e_P4 5'-nucleot 97.8 0.0005 1.1E-08 68.5 14.6 114 320-458 116-233 (266)
107 smart00775 LNS2 LNS2 domain. T 97.8 0.00023 4.9E-09 65.5 11.3 103 323-433 28-140 (157)
108 TIGR01662 HAD-SF-IIIA HAD-supe 97.8 0.00017 3.7E-09 63.7 10.2 96 322-437 25-130 (132)
109 COG0474 MgtA Cation transport 97.8 6.9E-05 1.5E-09 87.0 8.7 109 320-439 545-665 (917)
110 COG0637 Predicted phosphatase/ 97.7 0.00096 2.1E-08 64.7 15.4 100 318-436 82-183 (221)
111 TIGR01657 P-ATPase-V P-type AT 97.7 0.00016 3.4E-09 85.4 10.4 112 320-440 654-829 (1054)
112 TIGR01494 ATPase_P-type ATPase 97.6 0.00018 4E-09 78.2 9.4 87 321-438 346-432 (499)
113 TIGR01261 hisB_Nterm histidino 97.6 0.00029 6.4E-09 65.0 9.2 105 321-439 28-148 (161)
114 PRK10530 pyridoxal phosphate ( 97.6 0.00026 5.7E-09 70.2 8.7 51 393-444 197-248 (272)
115 PRK10513 sugar phosphate phosp 97.6 7.7E-05 1.7E-09 74.1 4.8 56 392-448 193-249 (270)
116 PRK10976 putative hydrolase; P 97.5 8.9E-05 1.9E-09 73.6 4.9 57 391-448 186-243 (266)
117 KOG0202 Ca2+ transporting ATPa 97.5 0.0004 8.6E-09 77.1 9.4 108 321-442 583-708 (972)
118 PRK12702 mannosyl-3-phosphogly 97.4 0.00087 1.9E-08 67.2 10.2 84 357-440 162-254 (302)
119 PF08282 Hydrolase_3: haloacid 97.4 0.00021 4.7E-09 69.0 5.3 57 392-449 183-240 (254)
120 PRK15126 thiamin pyrimidine py 97.4 0.00016 3.4E-09 72.1 4.4 80 392-472 185-265 (272)
121 COG2216 KdpB High-affinity K+ 97.4 0.00048 1E-08 72.7 7.6 92 322-442 447-539 (681)
122 COG0561 Cof Predicted hydrolas 97.3 0.00033 7.2E-09 69.4 6.1 57 391-448 185-242 (264)
123 TIGR01482 SPP-subfamily Sucros 97.3 0.00022 4.7E-09 68.7 4.4 54 393-447 147-201 (225)
124 PLN03190 aminophospholipid tra 97.3 0.0012 2.6E-08 78.4 10.9 59 391-453 854-913 (1178)
125 TIGR01487 SPP-like sucrose-pho 97.3 0.00027 5.8E-09 67.9 4.3 55 392-447 144-199 (215)
126 smart00577 CPDc catalytic doma 97.3 0.00026 5.7E-09 64.2 4.0 91 320-433 43-136 (148)
127 PRK03669 mannosyl-3-phosphogly 97.2 0.00028 6E-09 70.5 4.3 47 392-439 184-233 (271)
128 TIGR01652 ATPase-Plipid phosph 97.2 0.0011 2.4E-08 78.4 10.0 112 321-440 630-796 (1057)
129 PRK01158 phosphoglycolate phos 97.2 0.00032 7E-09 67.8 4.5 55 392-447 154-209 (230)
130 TIGR01664 DNA-3'-Pase DNA 3'-p 97.2 0.002 4.3E-08 59.7 9.2 92 323-433 43-156 (166)
131 PRK06769 hypothetical protein; 97.2 0.0015 3.3E-08 60.8 8.5 102 321-439 27-138 (173)
132 PLN02887 hydrolase family prot 97.2 0.00037 8E-09 76.7 4.8 56 392-448 504-560 (580)
133 COG1011 Predicted hydrolase (H 97.2 0.035 7.6E-07 53.2 17.9 99 320-440 97-201 (229)
134 TIGR01685 MDP-1 magnesium-depe 97.1 0.0028 6.1E-08 59.2 9.6 111 318-438 41-156 (174)
135 TIGR01668 YqeG_hyp_ppase HAD s 97.1 0.0029 6.3E-08 58.7 9.4 95 320-439 41-137 (170)
136 TIGR02463 MPGP_rel mannosyl-3- 97.0 0.00073 1.6E-08 65.1 4.8 44 393-437 177-220 (221)
137 TIGR02471 sucr_syn_bact_C sucr 97.0 0.00069 1.5E-08 66.1 4.4 57 392-449 156-213 (236)
138 PF08235 LNS2: LNS2 (Lipin/Ned 97.0 0.0056 1.2E-07 56.0 9.5 105 322-433 27-140 (157)
139 TIGR01486 HAD-SF-IIB-MPGP mann 96.9 0.00093 2E-08 66.0 4.5 49 393-441 174-223 (256)
140 COG1778 Low specificity phosph 96.8 0.0031 6.8E-08 57.1 6.7 84 331-440 44-127 (170)
141 TIGR00099 Cof-subfamily Cof su 96.8 0.0014 3.1E-08 64.6 4.7 54 392-446 185-239 (256)
142 TIGR01681 HAD-SF-IIIC HAD-supe 96.7 0.0045 9.8E-08 54.7 7.1 93 322-429 29-125 (128)
143 TIGR02461 osmo_MPG_phos mannos 96.7 0.0016 3.5E-08 63.3 4.5 46 393-438 179-225 (225)
144 PRK00192 mannosyl-3-phosphogly 96.7 0.0019 4.2E-08 64.5 5.0 49 395-444 190-240 (273)
145 KOG3085 Predicted hydrolase (H 96.7 0.042 9.1E-07 53.7 13.7 201 200-452 9-228 (237)
146 PLN02382 probable sucrose-phos 96.6 0.0024 5.1E-08 67.9 5.2 55 392-447 172-231 (413)
147 PF05116 S6PP: Sucrose-6F-phos 96.5 0.0043 9.4E-08 61.2 5.8 77 355-442 135-212 (247)
148 KOG0204 Calcium transporting A 96.5 0.0059 1.3E-07 68.2 7.2 110 320-439 645-765 (1034)
149 PHA02530 pseT polynucleotide k 96.3 0.0097 2.1E-07 60.1 7.4 101 321-436 186-293 (300)
150 TIGR01485 SPP_plant-cyano sucr 96.2 0.0068 1.5E-07 59.6 5.5 56 392-448 164-221 (249)
151 PF06941 NT5C: 5' nucleotidase 96.2 0.083 1.8E-06 49.8 12.6 117 319-497 70-186 (191)
152 TIGR01484 HAD-SF-IIB HAD-super 96.2 0.0041 9E-08 59.0 3.5 45 392-437 160-204 (204)
153 TIGR01686 FkbH FkbH-like domai 96.1 0.05 1.1E-06 55.8 11.1 111 323-458 32-149 (320)
154 PF11019 DUF2608: Protein of u 96.0 0.13 2.9E-06 50.9 13.1 110 314-431 73-197 (252)
155 PRK14502 bifunctional mannosyl 96.0 0.008 1.7E-07 66.7 4.8 48 392-440 610-659 (694)
156 KOG0210 P-type ATPase [Inorgan 95.9 0.008 1.7E-07 65.7 4.6 112 321-452 710-822 (1051)
157 PF03767 Acid_phosphat_B: HAD 95.9 0.056 1.2E-06 52.8 9.8 91 322-428 115-208 (229)
158 PRK10187 trehalose-6-phosphate 95.8 0.0087 1.9E-07 59.8 4.2 49 392-441 171-223 (266)
159 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.7 0.092 2E-06 51.4 10.9 89 320-432 22-115 (242)
160 KOG2914 Predicted haloacid-hal 95.7 0.22 4.8E-06 48.3 13.2 105 319-440 89-197 (222)
161 COG0241 HisB Histidinol phosph 95.6 0.094 2E-06 49.2 9.6 105 321-440 30-151 (181)
162 COG3700 AphA Acid phosphatase 95.3 0.1 2.2E-06 48.3 8.7 88 327-439 119-212 (237)
163 TIGR01675 plant-AP plant acid 95.3 0.35 7.5E-06 47.2 12.9 88 320-426 118-210 (229)
164 TIGR01663 PNK-3'Pase polynucle 95.0 0.12 2.6E-06 56.5 9.7 122 323-464 198-335 (526)
165 PTZ00174 phosphomannomutase; P 94.8 0.033 7.1E-07 54.9 4.5 53 392-449 185-243 (247)
166 PLN02423 phosphomannomutase 94.6 0.045 9.7E-07 54.0 4.7 52 392-449 186-242 (245)
167 TIGR02251 HIF-SF_euk Dullard-l 94.5 0.018 4E-07 53.0 1.6 94 320-433 40-133 (162)
168 KOG0206 P-type ATPase [General 93.1 0.079 1.7E-06 62.2 3.9 45 392-440 778-822 (1151)
169 PLN02580 trehalose-phosphatase 92.8 0.27 5.9E-06 51.6 7.0 48 392-439 298-352 (384)
170 TIGR00685 T6PP trehalose-phosp 92.5 0.15 3.2E-06 50.1 4.3 39 392-431 164-202 (244)
171 KOG0203 Na+/K+ ATPase, alpha s 92.0 0.31 6.8E-06 54.9 6.4 28 414-441 706-735 (1019)
172 TIGR01680 Veg_Stor_Prot vegeta 91.8 2.7 5.9E-05 42.0 12.1 91 320-426 143-236 (275)
173 PF13242 Hydrolase_like: HAD-h 91.5 0.34 7.4E-06 38.3 4.6 42 398-440 8-51 (75)
174 COG2179 Predicted hydrolase of 90.9 1.8 3.9E-05 39.9 9.2 93 320-438 44-138 (175)
175 PF12689 Acid_PPase: Acid Phos 90.6 1.3 2.9E-05 41.1 8.3 104 316-433 39-145 (169)
176 PRK14501 putative bifunctional 89.9 0.31 6.8E-06 55.7 4.3 47 392-441 654-703 (726)
177 KOG3109 Haloacid dehalogenase- 88.9 23 0.00051 34.3 16.6 117 310-440 82-207 (244)
178 TIGR01684 viral_ppase viral ph 88.0 1.1 2.5E-05 45.2 6.1 49 321-373 144-195 (301)
179 KOG0209 P-type ATPase [Inorgan 87.1 0.61 1.3E-05 52.6 3.9 42 394-440 793-834 (1160)
180 PRK03669 mannosyl-3-phosphogly 87.0 2.3 5E-05 42.2 7.8 18 195-212 4-21 (271)
181 TIGR02244 HAD-IG-Ncltidse HAD 86.7 5.8 0.00013 41.1 10.7 111 320-439 182-324 (343)
182 PHA03398 viral phosphatase sup 86.6 1.4 3.1E-05 44.5 5.9 51 320-374 145-198 (303)
183 KOG0208 Cation transport ATPas 86.2 0.61 1.3E-05 53.5 3.4 45 391-440 836-880 (1140)
184 TIGR01459 HAD-SF-IIA-hyp4 HAD- 84.7 1.4 3E-05 43.1 4.8 38 397-434 198-236 (242)
185 PLN02645 phosphoglycolate phos 83.3 4.6 0.0001 41.1 8.2 86 323-433 45-132 (311)
186 KOG0205 Plasma membrane H+-tra 81.6 1.2 2.7E-05 49.0 3.2 45 391-441 568-613 (942)
187 COG3769 Predicted hydrolase (H 81.5 1.1 2.4E-05 43.2 2.5 27 413-439 209-236 (274)
188 PRK05157 pyrroloquinoline quin 81.1 26 0.00056 34.6 11.9 144 7-181 67-230 (246)
189 PLN02205 alpha,alpha-trehalose 81.0 1.6 3.4E-05 50.8 4.1 40 392-432 759-801 (854)
190 TIGR02111 PQQ_syn_pqqC coenzym 80.5 32 0.0007 33.8 12.3 143 7-181 60-223 (239)
191 PTZ00445 p36-lilke protein; Pr 79.1 13 0.00027 36.0 8.8 113 322-440 75-207 (219)
192 COG2503 Predicted secreted aci 79.0 8.6 0.00019 37.7 7.7 125 308-458 106-237 (274)
193 KOG2116 Protein involved in pl 77.2 1.4 3E-05 48.6 1.9 23 197-219 529-551 (738)
194 PF08645 PNK3P: Polynucleotide 76.3 12 0.00026 34.3 7.7 86 322-424 29-130 (159)
195 PLN02588 glycerol-3-phosphate 75.8 24 0.00053 38.4 10.8 123 303-438 108-238 (525)
196 CHL00168 pbsA heme oxygenase; 75.8 63 0.0014 31.8 12.9 109 41-176 89-205 (238)
197 COG5083 SMP2 Uncharacterized p 73.4 2.6 5.6E-05 44.4 2.7 25 197-221 374-398 (580)
198 COG5424 Pyrroloquinoline quino 73.0 70 0.0015 31.3 12.1 144 7-181 65-228 (242)
199 PRK14502 bifunctional mannosyl 71.9 27 0.00058 39.6 10.3 18 197-214 415-432 (694)
200 PRK10444 UMP phosphatase; Prov 71.6 6.7 0.00015 38.7 5.1 46 393-439 173-220 (248)
201 PLN03017 trehalose-phosphatase 70.4 5.6 0.00012 41.6 4.4 47 392-438 280-333 (366)
202 TIGR02245 HAD_IIID1 HAD-superf 69.9 21 0.00045 34.0 7.8 40 321-365 44-83 (195)
203 PF13344 Hydrolase_6: Haloacid 69.9 9.4 0.0002 32.1 5.0 42 322-366 14-57 (101)
204 TIGR00685 T6PP trehalose-phosp 69.2 2.7 5.8E-05 41.2 1.7 15 197-211 2-16 (244)
205 COG2099 CobK Precorrin-6x redu 67.2 8.7 0.00019 37.9 4.7 53 430-496 72-124 (257)
206 PF09949 DUF2183: Uncharacteri 67.2 21 0.00045 30.2 6.5 76 343-426 1-79 (100)
207 PLN02151 trehalose-phosphatase 66.9 7.1 0.00015 40.6 4.3 47 392-438 266-319 (354)
208 PRK14501 putative bifunctional 65.8 5.3 0.00012 45.7 3.5 16 197-212 491-506 (726)
209 PF03031 NIF: NLI interacting 64.1 7.5 0.00016 35.1 3.5 40 320-364 34-73 (159)
210 PRK07878 molybdopterin biosynt 63.9 80 0.0017 33.4 11.6 137 309-455 15-161 (392)
211 COG1458 Predicted DNA-binding 63.7 4.8 0.0001 38.0 2.0 42 417-458 157-200 (221)
212 TIGR01457 HAD-SF-IIA-hyp2 HAD- 63.4 13 0.00028 36.5 5.3 44 395-439 179-224 (249)
213 PRK10187 trehalose-6-phosphate 63.3 4.9 0.00011 40.0 2.3 15 197-211 13-27 (266)
214 COG4996 Predicted phosphatase 63.0 26 0.00057 31.2 6.4 51 310-365 28-80 (164)
215 PLN02645 phosphoglycolate phos 62.9 11 0.00024 38.3 4.9 43 396-439 232-276 (311)
216 TIGR01484 HAD-SF-IIB HAD-super 62.1 3.9 8.4E-05 38.5 1.2 14 200-213 1-14 (204)
217 PLN02580 trehalose-phosphatase 61.6 4.6 9.9E-05 42.5 1.7 15 197-211 118-132 (384)
218 PRK08762 molybdopterin biosynt 61.1 84 0.0018 32.9 11.1 137 309-455 108-254 (376)
219 COG1877 OtsB Trehalose-6-phosp 59.1 5.5 0.00012 39.8 1.8 39 393-432 180-218 (266)
220 TIGR01452 PGP_euk phosphoglyco 59.1 13 0.00028 37.2 4.4 40 398-438 206-247 (279)
221 PLN02423 phosphomannomutase 59.1 6 0.00013 38.9 2.0 17 197-213 6-22 (245)
222 PLN02151 trehalose-phosphatase 58.6 5.9 0.00013 41.2 1.9 15 197-211 97-111 (354)
223 PRK09484 3-deoxy-D-manno-octul 58.6 5.3 0.00011 37.3 1.5 16 197-212 20-35 (183)
224 TIGR02250 FCP1_euk FCP1-like p 58.4 12 0.00025 34.3 3.7 42 319-365 55-96 (156)
225 PRK05690 molybdopterin biosynt 58.2 1.2E+02 0.0026 29.7 11.1 138 309-456 5-152 (245)
226 PF05116 S6PP: Sucrose-6F-phos 58.0 6 0.00013 38.9 1.8 15 197-211 1-15 (247)
227 COG0647 NagD Predicted sugar p 57.1 45 0.00096 33.5 7.8 38 322-362 24-63 (269)
228 TIGR01460 HAD-SF-IIA Haloacid 57.0 16 0.00036 35.5 4.7 39 395-434 189-229 (236)
229 TIGR01485 SPP_plant-cyano sucr 57.0 6.3 0.00014 38.5 1.8 14 198-211 1-14 (249)
230 PLN03063 alpha,alpha-trehalose 57.0 6 0.00013 45.8 1.9 41 392-432 675-721 (797)
231 PLN03017 trehalose-phosphatase 56.4 6.9 0.00015 40.9 2.0 14 197-210 110-123 (366)
232 TIGR01458 HAD-SF-IIA-hyp3 HAD- 54.8 17 0.00038 35.8 4.5 43 396-439 181-225 (257)
233 PF09419 PGP_phosphatase: Mito 52.6 1.6E+02 0.0034 27.4 10.1 99 322-439 59-165 (168)
234 TIGR01689 EcbF-BcbF capsule bi 52.3 8.6 0.00019 34.0 1.7 13 200-212 3-15 (126)
235 PF02358 Trehalose_PPase: Treh 51.2 16 0.00034 35.4 3.5 47 393-439 163-217 (235)
236 COG4229 Predicted enolase-phos 49.3 78 0.0017 30.0 7.4 96 320-433 101-198 (229)
237 PLN02205 alpha,alpha-trehalose 49.3 12 0.00025 43.8 2.5 36 142-177 508-543 (854)
238 TIGR02471 sucr_syn_bact_C sucr 49.1 7.6 0.00017 37.5 0.9 14 200-213 1-14 (236)
239 TIGR02468 sucrsPsyn_pln sucros 48.0 39 0.00085 40.2 6.5 76 354-439 924-1002(1050)
240 cd01483 E1_enzyme_family Super 46.6 1E+02 0.0022 27.2 7.7 62 392-457 50-120 (143)
241 TIGR01681 HAD-SF-IIIC HAD-supe 46.3 12 0.00025 32.8 1.6 14 200-213 2-15 (128)
242 PF14518 Haem_oxygenas_2: Iron 45.8 83 0.0018 26.1 6.8 63 31-111 20-90 (106)
243 PLN03064 alpha,alpha-trehalose 45.4 9 0.00019 44.9 0.9 41 391-431 764-810 (934)
244 PF12981 DUF3865: Domain of Un 43.9 1.5E+02 0.0031 28.8 8.5 144 18-177 71-225 (231)
245 PRK07411 hypothetical protein; 43.7 2.9E+02 0.0064 29.1 11.9 137 309-455 11-157 (390)
246 TIGR02726 phenyl_P_delta pheny 43.6 14 0.0003 34.2 1.7 16 197-212 6-21 (169)
247 PF08745 UPF0278: UPF0278 fami 43.5 9.9 0.00021 36.2 0.7 42 417-458 150-193 (205)
248 PRK05600 thiamine biosynthesis 42.6 2.4E+02 0.0053 29.5 11.0 138 308-455 13-160 (370)
249 PTZ00174 phosphomannomutase; P 42.3 14 0.00031 36.1 1.7 16 199-214 6-21 (247)
250 TIGR00099 Cof-subfamily Cof su 41.9 2.2E+02 0.0047 27.6 10.0 48 323-374 17-64 (256)
251 PLN02382 probable sucrose-phos 41.7 19 0.00041 38.4 2.6 16 197-212 8-23 (413)
252 TIGR01662 HAD-SF-IIIA HAD-supe 41.3 14 0.00031 32.0 1.3 12 200-211 2-13 (132)
253 PF08645 PNK3P: Polynucleotide 40.9 14 0.00031 33.7 1.4 14 200-213 2-15 (159)
254 PF00899 ThiF: ThiF family; I 40.9 1.1E+02 0.0023 26.7 7.0 111 342-456 3-122 (135)
255 PRK05597 molybdopterin biosynt 40.9 2.3E+02 0.005 29.4 10.5 109 342-455 29-147 (355)
256 cd00232 HemeO Heme oxygenase c 40.3 3.1E+02 0.0068 25.5 12.5 94 48-166 93-190 (203)
257 PF05761 5_nucleotid: 5' nucle 40.0 20 0.00043 38.7 2.4 38 321-362 182-219 (448)
258 TIGR01684 viral_ppase viral ph 38.3 20 0.00044 36.3 2.0 20 194-213 122-141 (301)
259 PF02571 CbiJ: Precorrin-6x re 38.0 13 0.00028 36.8 0.6 53 430-496 72-125 (249)
260 TIGR01664 DNA-3'-Pase DNA 3'-p 37.7 24 0.00052 32.4 2.3 23 191-213 6-28 (166)
261 PRK13689 hypothetical protein; 37.6 1E+02 0.0023 24.5 5.4 44 127-170 5-67 (75)
262 KOG3625 Alpha amylase [Carbohy 37.5 36 0.00078 39.5 3.9 98 79-199 637-744 (1521)
263 TIGR03875 RNA_lig_partner RNA 37.2 25 0.00054 33.6 2.3 39 418-456 154-194 (206)
264 PRK15116 sulfur acceptor prote 37.1 3.1E+02 0.0068 27.4 10.3 109 342-455 31-150 (268)
265 PF02609 Exonuc_VII_S: Exonucl 36.9 81 0.0018 23.1 4.6 35 134-170 1-35 (53)
266 TIGR01457 HAD-SF-IIA-hyp2 HAD- 36.4 61 0.0013 31.7 5.1 39 325-366 20-60 (249)
267 COG4850 Uncharacterized conser 36.4 1E+02 0.0022 31.8 6.5 97 320-428 194-294 (373)
268 PRK08057 cobalt-precorrin-6x r 36.1 15 0.00033 36.3 0.8 53 430-496 71-124 (248)
269 TIGR02463 MPGP_rel mannosyl-3- 36.0 85 0.0019 29.7 6.0 36 327-366 21-56 (221)
270 TIGR01689 EcbF-BcbF capsule bi 35.8 94 0.002 27.4 5.6 50 321-373 23-86 (126)
271 PF06506 PrpR_N: Propionate ca 35.7 1.2E+02 0.0025 28.1 6.6 61 397-464 92-156 (176)
272 PRK04358 hypothetical protein; 35.3 25 0.00055 33.8 2.0 40 418-457 158-199 (217)
273 TIGR01670 YrbI-phosphatas 3-de 35.2 19 0.0004 32.6 1.1 13 200-212 3-15 (154)
274 TIGR02355 moeB molybdopterin s 34.6 1.8E+02 0.0039 28.5 8.0 109 342-455 25-143 (240)
275 TIGR01487 SPP-like sucrose-pho 33.7 82 0.0018 29.7 5.4 49 323-375 19-67 (215)
276 PHA03398 viral phosphatase sup 33.6 23 0.00051 35.9 1.6 18 196-213 126-143 (303)
277 COG0561 Cof Predicted hydrolas 33.5 3.4E+02 0.0074 26.3 10.0 47 323-373 21-67 (264)
278 cd00757 ThiF_MoeB_HesA_family 32.1 3.5E+02 0.0077 25.9 9.6 110 342-456 22-141 (228)
279 TIGR02461 osmo_MPG_phos mannos 32.0 95 0.0021 29.9 5.6 45 327-375 20-64 (225)
280 COG3143 CheZ Chemotaxis protei 30.4 4.8E+02 0.01 24.7 9.5 112 4-150 9-126 (217)
281 PF03332 PMM: Eukaryotic phosp 30.1 35 0.00077 33.0 2.1 54 392-449 159-217 (220)
282 COG1778 Low specificity phosph 29.9 28 0.00062 32.0 1.3 13 200-212 10-22 (170)
283 PRK15126 thiamin pyrimidine py 29.5 3.3E+02 0.0073 26.5 9.2 46 326-375 23-68 (272)
284 PRK06153 hypothetical protein; 29.5 3.8E+02 0.0083 28.4 9.7 131 318-457 158-297 (393)
285 PF02358 Trehalose_PPase: Treh 29.1 25 0.00055 34.0 1.0 11 202-212 1-11 (235)
286 PRK00192 mannosyl-3-phosphogly 28.8 1.2E+02 0.0027 29.8 5.9 46 325-374 24-69 (273)
287 COG5663 Uncharacterized conser 28.7 27 0.00058 32.5 1.0 18 198-215 6-23 (194)
288 cd00755 YgdL_like Family of ac 27.4 5.2E+02 0.011 25.1 9.9 109 342-455 12-131 (231)
289 TIGR01458 HAD-SF-IIA-hyp3 HAD- 27.1 1.1E+02 0.0025 30.0 5.3 41 323-366 22-64 (257)
290 TIGR01456 CECR5 HAD-superfamil 26.7 50 0.0011 33.7 2.7 27 413-439 264-292 (321)
291 PRK15052 D-tagatose-1,6-bispho 26.6 1.7E+02 0.0036 31.2 6.5 85 328-424 2-91 (421)
292 COG0678 AHP1 Peroxiredoxin [Po 26.2 1.6E+02 0.0035 26.9 5.4 46 324-372 58-104 (165)
293 PF08496 Peptidase_S49_N: Pept 26.2 2.5E+02 0.0054 25.7 6.8 69 130-215 47-115 (155)
294 cd01491 Ube1_repeat1 Ubiquitin 26.1 4.8E+02 0.01 26.4 9.5 108 343-456 21-135 (286)
295 PF06189 5-nucleotidase: 5'-nu 25.4 5.1E+02 0.011 25.9 9.2 41 285-329 203-244 (264)
296 PRK10530 pyridoxal phosphate ( 25.4 5E+02 0.011 25.0 9.6 44 328-375 26-69 (272)
297 PRK01158 phosphoglycolate phos 25.1 1.6E+02 0.0034 27.9 5.7 45 325-373 23-67 (230)
298 KOG4549 Magnesium-dependent ph 25.1 2.2E+02 0.0048 25.3 5.9 44 319-365 41-84 (144)
299 cd01410 SIRT7 SIRT7: Eukaryoti 24.1 3.9E+02 0.0085 25.4 8.2 46 412-457 131-188 (206)
300 TIGR01486 HAD-SF-IIB-MPGP mann 23.8 1.7E+02 0.0037 28.4 5.8 45 327-375 21-65 (256)
301 TIGR00213 GmhB_yaeD D,D-heptos 23.6 42 0.00091 30.8 1.3 13 199-211 2-14 (176)
302 PRK10444 UMP phosphatase; Prov 23.4 1.3E+02 0.0029 29.4 4.9 39 324-365 19-59 (248)
303 PRK08328 hypothetical protein; 23.4 4.9E+02 0.011 25.1 8.8 109 342-455 28-147 (231)
304 PF08013 Tagatose_6_P_K: Tagat 23.2 1.5E+02 0.0033 31.6 5.4 85 327-423 4-93 (424)
305 KOG3189 Phosphomannomutase [Li 23.2 49 0.0011 31.7 1.7 55 391-449 189-248 (252)
306 PF15565 Imm16: Immunity prote 22.4 1.2E+02 0.0026 25.9 3.8 39 136-174 13-51 (106)
307 PRK10513 sugar phosphate phosp 22.3 5.2E+02 0.011 25.0 9.0 36 327-366 25-60 (270)
308 PRK15458 tagatose 6-phosphate 22.3 2.6E+02 0.0056 29.9 6.9 84 329-424 6-94 (426)
309 TIGR02810 agaZ_gatZ D-tagatose 22.2 2.4E+02 0.0053 30.0 6.7 83 330-424 3-90 (420)
310 PRK00977 exodeoxyribonuclease 21.5 1.5E+02 0.0032 24.0 3.9 37 132-170 10-46 (80)
311 PRK10976 putative hydrolase; P 21.4 2.1E+02 0.0045 27.9 5.9 44 327-374 24-67 (266)
312 cd04724 Tryptophan_synthase_al 21.3 6.5E+02 0.014 24.5 9.3 103 326-449 117-224 (242)
313 PRK14068 exodeoxyribonuclease 21.3 1.5E+02 0.0033 23.7 3.9 37 132-170 6-42 (76)
314 TIGR02356 adenyl_thiF thiazole 20.7 7.1E+02 0.015 23.4 9.4 110 342-456 22-141 (202)
315 PRK15174 Vi polysaccharide exp 20.7 4.6E+02 0.01 29.6 9.2 41 413-458 546-591 (656)
316 TIGR01452 PGP_euk phosphoglyco 20.4 1.6E+02 0.0035 29.2 4.9 39 324-365 20-60 (279)
317 PRK14067 exodeoxyribonuclease 20.2 1.7E+02 0.0036 23.7 4.0 37 132-170 7-43 (80)
318 TIGR01280 xseB exodeoxyribonuc 20.1 1.7E+02 0.0038 22.7 3.9 36 133-170 2-37 (67)
No 1
>COG0819 TenA Putative transcription activator [Transcription]
Probab=100.00 E-value=6.9e-33 Score=264.72 Aligned_cols=155 Identities=30% Similarity=0.426 Sum_probs=143.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCC--CCCCChhhHHHHHHHHHHh-cCCcccccccccccchh
Q 010855 7 PSLSHDEEDKLAIRKLRKRVK-QKLKTLDSLVREWGFELPE--EIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIETPF 82 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~~i~-~E~~~h~~~~~~~g~~~~~--~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~~~ 82 (499)
++||+|.+.+..+.+.+..+. .|+.+|+.+++++||+.++ +..++|+|.+||+||++++ .|++
T Consensus 59 ~~ka~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~ym~~~~~~g~~------------- 125 (218)
T COG0819 59 ASKAPDLELMEELAKIIQFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTRYLLDTAYSGSF------------- 125 (218)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHHHHHHHHhcCCH-------------
Confidence 899999999999999888777 6999999999999999843 6789999999999999999 6887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 010855 83 EKIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKK 162 (499)
Q Consensus 83 ~~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~ 162 (499)
+++++||+||+|+|++||+++.+..... ++++|++||++|+|++|++.|++++++||+++...+++++++|++
T Consensus 126 ------~~~~aAl~PC~~~Y~eig~~~~~~~~~~-~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~~~~~~l~~ 198 (218)
T COG0819 126 ------AELLAALLPCLWGYAEIGKRLKAKPRAS-PNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSEEELEKLKQ 198 (218)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhccccC-CCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6799999999999999999998754323 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC
Q 010855 163 LYYKAIKLHVNFFAAQPVK 181 (499)
Q Consensus 163 ~F~~a~~lE~~Fw~~a~~~ 181 (499)
+|.+|+++|++||+|||..
T Consensus 199 iF~~ss~~E~~Fwd~a~~~ 217 (218)
T COG0819 199 IFLTASRFELAFWDMAYRL 217 (218)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999874
No 2
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.96 E-value=2e-28 Score=265.66 Aligned_cols=154 Identities=18% Similarity=0.359 Sum_probs=136.8
Q ss_pred ccc-cCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHh-cCCcccccccccccc
Q 010855 4 FSK-PSLSHDEEDKLAIRKLRKRVK-QKLKTLDSLVREWGFELPEEIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIET 80 (499)
Q Consensus 4 ~~~-~~~a~d~~~~~~~~~~~~~i~-~E~~~h~~~~~~~g~~~~~~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~ 80 (499)
|+. ++||+|.+++.++...+..+. .|+++|+.++++||++ .+++|+|.+|++||++++ +|++
T Consensus 372 ~a~~~aka~~~e~~~~~~~~~~~~~~~E~~~h~~~~~~~~~~----~~~~p~~~aY~~~l~~~a~~~~~----------- 436 (530)
T PRK14713 372 LARLAALAPDPAEQVFWAQSAQACLEVESELHRSWLGDRDAD----TAPSPVTLAYTDFLLARAAGGSY----------- 436 (530)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----CCCChHHHHHHHHHHHHHhcCCH-----------
Confidence 444 899999999988877765554 8999999999999873 578999999999999998 5775
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHH
Q 010855 81 PFEKIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVI 160 (499)
Q Consensus 81 ~~~~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~ 160 (499)
+++++||+||+|+|.+||+++..... ..++|+|++||++|+|++|.++++++++++|++++.++++++++|
T Consensus 437 --------~~~l~AllPC~~~Y~~ig~~l~~~~~-~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~~ 507 (530)
T PRK14713 437 --------AVGAAAVLPCFWLYAEVGAELHARAG-NPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASPAERAAM 507 (530)
T ss_pred --------HHHHHHHHhHHHHHHHHHHHHHhhcc-CCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 67999999999999999999875311 225789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 010855 161 KKLYYKAIKLHVNFFAAQPVK 181 (499)
Q Consensus 161 ~~~F~~a~~lE~~Fw~~a~~~ 181 (499)
+++|+++|+||++||||||+.
T Consensus 508 ~~~F~~a~~~E~~Fwd~A~~~ 528 (530)
T PRK14713 508 ARAFLTACRYELEFFDQARRR 528 (530)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999863
No 3
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.95 E-value=5.3e-28 Score=271.65 Aligned_cols=149 Identities=16% Similarity=0.231 Sum_probs=134.6
Q ss_pred cCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHh-cCCcccccccccccchhhh
Q 010855 7 PSLSHDEEDKLAIRKLRK-RVKQKLKTLDSLVREWGFELPEEIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIETPFEK 84 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~-~i~~E~~~h~~~~~~~g~~~~~~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~~~~~ 84 (499)
++||+|.+++.++...+. .+.+|+++|+.+++++|++ .+++|+|.+||+||++++ +|++
T Consensus 602 ~aka~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~~~~----~~~~p~~~aYt~~l~~~a~~g~~--------------- 662 (755)
T PRK09517 602 SSIAPDSHAQVEWAQSAAECIVVEAELHRSYLSGKEAP----SAPSPVTMAYTDFLIARTYTEDY--------------- 662 (755)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC----CCCChHHHHHHHHHHHHHhcCCH---------------
Confidence 789999887777777664 5558999999999999863 578999999999999998 5775
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010855 85 IKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKKLY 164 (499)
Q Consensus 85 ~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F 164 (499)
+++++||+||+|+|.+||+++.+... ++|+|++||++|+|++|.+++.+++++||++++.++++++++|+++|
T Consensus 663 ----~~~laAllPC~w~Y~~ig~~l~~~~~---~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~~~~~~l~~~F 735 (755)
T PRK09517 663 ----VVGVAAVLPCYWLYAEIGLMLAEQNH---DEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGPEQRVDAARAF 735 (755)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhccC---CCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 68999999999999999999976322 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCC
Q 010855 165 YKAIKLHVNFFAAQPVK 181 (499)
Q Consensus 165 ~~a~~lE~~Fw~~a~~~ 181 (499)
.++|+||++||||||.+
T Consensus 736 ~~a~~lE~~Fwd~A~~~ 752 (755)
T PRK09517 736 LSASVHEREFFDQATRH 752 (755)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999999985
No 4
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.94 E-value=2.3e-26 Score=227.17 Aligned_cols=229 Identities=16% Similarity=0.233 Sum_probs=183.3
Q ss_pred CCCceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchh
Q 010855 195 VEGHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAV 274 (499)
Q Consensus 195 ~~~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~ 274 (499)
+..+++||+|||.|||+.-+- .+++.. +||.+......+++.|.++..+++.+|+|+|..
T Consensus 19 g~~~lqvisDFD~Tlt~~~~~--------~g~~~~------------s~~~~~~~~~~~~~~~~~~~~~l~~~Y~PiE~d 78 (277)
T TIGR01544 19 GAAKLQIISDFDYTLSRFSYE--------DGKRCP------------TCHGIFDNCKLLTDECRKKLLQLKEKYYPIEVD 78 (277)
T ss_pred ChhheEEeeccCccceeeecC--------CCCCCc------------chHhHHhhCCCCCHHHHHHHHHHHhhccceecC
Confidence 458999999999999986321 222221 466677777888999999999999999999999
Q ss_pred hcCCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCcccEEEEeccCC
Q 010855 275 AEFEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQ--HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC 352 (499)
Q Consensus 275 ~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~--~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s 352 (499)
+.++.+++.+ .|.|||.++++.+.+. +++++++.++.+ ++.++||+.+|++.|+++| +++.|+|+|+
T Consensus 79 ~~~~~~eK~~---~m~eWw~k~~~l~~~~----~~~~e~i~~~v~~~~l~l~pG~~efl~~L~~~G---Ipv~IvS~G~- 147 (277)
T TIGR01544 79 PVLTVEEKYP---YMVEWWTKSHGLLVQQ----AFPKAKIKEIVAESDVMLKDGYENFFDKLQQHS---IPVFIFSAGI- 147 (277)
T ss_pred CCCChHHhhh---HHHHHHHHHHHHHhcC----CCCHHHHHHHHhhcCCccCcCHHHHHHHHHHCC---CcEEEEeCCc-
Confidence 8899999886 6889999999999876 469999999986 8999999999999999999 9999999998
Q ss_pred hHHHHHHHHcCCC--CceEEEeeceEee-CCeeeccccccCCChhhhHHHHHH-HHhhcC-CCCCceEEEEcCCcccHHH
Q 010855 353 GDLIRSAFASGDL--NAFRVHSNELVYE-ESISTGEIVNKLESPLEKLQAFND-ILKDHS-NDEQNLTVYIGGSPGDLLC 427 (499)
Q Consensus 353 ~~~I~~~L~~~gl--~~~~I~aN~l~~~-~g~~tG~~~~~~~~g~~K~~~l~~-~~~~~~-~~~~~~vIyiGDs~tDl~~ 427 (499)
..+|+.+|++.|+ .++.|+||+|.|+ +|+++| +.++.....+|.+.+.+ .....+ .-.+.++|++|||.||+.|
T Consensus 148 ~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG-~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~m 226 (277)
T TIGR01544 148 GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKG-FKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRM 226 (277)
T ss_pred HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeC-CCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhH
Confidence 7899999998887 4679999999995 699999 56667777889876554 332222 1135789999999999999
Q ss_pred HHhcC-----ccEEEcCC---chHHhhhhhhCCccc
Q 010855 428 LLEAD-----IGIVIGSS---SSLRRLGDHFGVSFV 455 (499)
Q Consensus 428 l~~Ad-----igiv~~~~---~~L~~~~~~~gi~~~ 455 (499)
+.-.. +-|-|-+. ..|.+|.+.+.|-++
T Consensus 227 a~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~ 262 (277)
T TIGR01544 227 ADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLV 262 (277)
T ss_pred hcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEE
Confidence 87662 12333332 468888888876544
No 5
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=99.94 E-value=2.2e-27 Score=227.72 Aligned_cols=154 Identities=29% Similarity=0.487 Sum_probs=138.7
Q ss_pred cCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCChhhHHHHHHHHHHh-cCCcccccccccccchh
Q 010855 7 PSLSHDEEDK-LAIRKLRKRVKQKLKTLDSLVREWGFELPE--EIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIETPF 82 (499)
Q Consensus 7 ~~~a~d~~~~-~~~~~~~~~i~~E~~~h~~~~~~~g~~~~~--~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~~~ 82 (499)
++|++|.+.+ .++..+...+.+|+++|+.+++.+|++.++ ..+++|+|.+|++||++++ ++++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~~l~~~a~~~~~------------- 118 (210)
T PF03070_consen 52 ASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPSPATRAYTDFLLSLAQTGSL------------- 118 (210)
T ss_dssp HHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHHHHHHHHHHSSH-------------
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHHHHHHHhccCCH-------------
Confidence 7899999888 556666677779999999999999999885 6789999999999999998 5776
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Q 010855 83 EKIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKK 162 (499)
Q Consensus 83 ~~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~ 162 (499)
+++++||+||+|+|.++|+++.+... ...+++|++||+.|++++|.+.+.++++++|+++..++++++++|++
T Consensus 119 ------~~~l~al~pc~~~Y~~~~~~~~~~~~-~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (210)
T PF03070_consen 119 ------AEGLAALLPCEWIYAEIGKRLAEKLR-APEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEE 191 (210)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHCS-TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhcccc-CCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 68999999999999999999987644 23778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 010855 163 LYYKAIKLHVNFFAAQPV 180 (499)
Q Consensus 163 ~F~~a~~lE~~Fw~~a~~ 180 (499)
+|+++|++|+.||++||.
T Consensus 192 ~f~~~~~~E~~Fwd~a~~ 209 (210)
T PF03070_consen 192 IFRRSCELEYDFWDAAYN 209 (210)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999864
No 6
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.94 E-value=4.5e-26 Score=246.26 Aligned_cols=172 Identities=21% Similarity=0.303 Sum_probs=137.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHh-cCCcccccccccccchhhh
Q 010855 7 PSLSHDEEDKLAIRKLRKRVK-QKLKTLDSLVREWGFELPEEIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIETPFEK 84 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~~i~-~E~~~h~~~~~~~g~~~~~~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~~~~~ 84 (499)
++|++|.+++.++...+..+. +|..+|+.++.. .+..+++|+|.+||+||++++ .|++.
T Consensus 69 ~~ka~~~~~~~~~~~~~~~~~~~e~~~h~~~~~~-----~~~~~~~p~~~aY~~~l~~~a~~g~~~-------------- 129 (504)
T PTZ00347 69 ITKSDVTATGGGLLELLKGVLEELKNCHHHYIDN-----PDAAGPEAACRKYVDFLLASGNADTLG-------------- 129 (504)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccCCCHHHHHHHHHHHHHHhcCCcc--------------
Confidence 789999988888888776666 677899999742 124678999999999999999 56642
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010855 85 IKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKKLY 164 (499)
Q Consensus 85 ~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F 164 (499)
++++++||+||+|+|++||+++....... ++|+|++||++|+|++|.+++.+++++||+++. ++++++|+++|
T Consensus 130 ---~~~~l~Al~pC~~~Y~~ig~~l~~~~~~~-~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~---~~~~~~~~~~F 202 (504)
T PTZ00347 130 ---PSVVIAAVIPCARLYAWVGQELTNEVELT-ESHPFRRWLLSYSDEPINTSVEQLESLLDKYIR---PGEFSEVAQAY 202 (504)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---hhhHHHHHHHH
Confidence 26899999999999999999987532222 578999999999999999999999999999974 36888899999
Q ss_pred HHHHHHHHHhcCCCCCCCCccccccCCCCCCCCceEEEEeCCcc
Q 010855 165 YKAIKLHVNFFAAQPVKQQTTVPLSWVKDPVEGHLTLFCDFDWT 208 (499)
Q Consensus 165 ~~a~~lE~~Fw~~a~~~~~~~~p~~~~~~~~~~~~~ii~DFD~T 208 (499)
+++|+||++||+|||..+ .+|....- ..+..+.|.=.|-+
T Consensus 203 ~~~~~~E~~Fw~~Ay~~~--~w~~~~~~--~~~~vLtIag~D~s 242 (504)
T PTZ00347 203 RRAMELEYDFFDSFGYCL--GRPVENPM--KIPTVLTVSGSDSG 242 (504)
T ss_pred HHHHHHHHHHhHhHHhhh--cccccCCC--CCCeEEEEeCcCCC
Confidence 999999999999999854 55553322 12345555555544
No 7
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=2.8e-25 Score=201.07 Aligned_cols=195 Identities=16% Similarity=0.174 Sum_probs=143.3
Q ss_pred CceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhhc
Q 010855 197 GHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAE 276 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 276 (499)
++..+++|||||||.+|+.+.|...- ....|..+.+..+.+....+.
T Consensus 2 kk~vi~sDFDGTITl~Ds~~~itdtf-----------------------~~~e~k~l~~~vls~tiS~rd---------- 48 (220)
T COG4359 2 KKPVIFSDFDGTITLNDSNDYITDTF-----------------------GPGEWKALKDGVLSKTISFRD---------- 48 (220)
T ss_pred CceEEEecCCCceEecchhHHHHhcc-----------------------CchHHHHHHHHHhhCceeHHH----------
Confidence 46699999999999999998877521 345677665544433222111
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHh-hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHH
Q 010855 277 FEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWAS-QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDL 355 (499)
Q Consensus 277 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~-~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~ 355 (499)
...|+..+ + +.+.+++.+.. +++.++|||++|++|+++++ +|++|||+|. ..|
T Consensus 49 -------------------~~g~mf~~-i--~~s~~Eile~llk~i~Idp~fKef~e~ike~d---i~fiVvSsGm-~~f 102 (220)
T COG4359 49 -------------------GFGRMFGS-I--HSSLEEILEFLLKDIKIDPGFKEFVEWIKEHD---IPFIVVSSGM-DPF 102 (220)
T ss_pred -------------------HHHHHHHh-c--CCCHHHHHHHHHhhcccCccHHHHHHHHHHcC---CCEEEEeCCC-chH
Confidence 11223222 1 34677777775 47999999999999999999 9999999997 789
Q ss_pred HHHHHHcCC----CCceEEEeeceEee-CCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHh
Q 010855 356 IRSAFASGD----LNAFRVHSNELVYE-ESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLE 430 (499)
Q Consensus 356 I~~~L~~~g----l~~~~I~aN~l~~~-~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~ 430 (499)
|.++|+..+ +..++|++|+..+. +|-..-...+....|.||...++.+.+. +..++|+|||++|+.+++.
T Consensus 103 I~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK~~vI~~l~e~-----~e~~fy~GDsvsDlsaakl 177 (220)
T COG4359 103 IYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDKSSVIHELSEP-----NESIFYCGDSVSDLSAAKL 177 (220)
T ss_pred HHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCcchhHHHhhcC-----CceEEEecCCcccccHhhh
Confidence 999998753 34456666666663 2322111224567899999999999864 3568899999999999999
Q ss_pred cCccEEEcCCchHHhhhhhhCCcccccc
Q 010855 431 ADIGIVIGSSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 431 Adigiv~~~~~~L~~~~~~~gi~~~p~~ 458 (499)
+| ++.++..|..+|++++++|++|+
T Consensus 178 sD---llFAK~~L~nyc~eqn~~f~~fe 202 (220)
T COG4359 178 SD---LLFAKDDLLNYCREQNLNFLEFE 202 (220)
T ss_pred hh---hHhhHHHHHHHHHHcCCCCcccc
Confidence 99 45566689999999999999996
No 8
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.92 E-value=2.1e-24 Score=207.55 Aligned_cols=199 Identities=21% Similarity=0.173 Sum_probs=164.6
Q ss_pred CCceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhh
Q 010855 196 EGHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVA 275 (499)
Q Consensus 196 ~~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 275 (499)
+.+.+++||||+|||...+++.+++... .......++...+..
T Consensus 3 ~~~~L~vFD~D~TLi~~~~~~~~~~~~g----------------------~~~~v~~~t~~~~~~--------------- 45 (212)
T COG0560 3 RMKKLAVFDLDGTLINAELIDELARGAG----------------------VGEEVLAITERAMRG--------------- 45 (212)
T ss_pred CccceEEEecccchhhHHHHHHHHHHhC----------------------CHHHHHHHHHHHhcc---------------
Confidence 4567999999999999777777776543 112222222222211
Q ss_pred cCCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhhc-CCCChhHHHHHHHHHHcCCCcccEEEEeccCChH
Q 010855 276 EFEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQH-LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGD 354 (499)
Q Consensus 276 ~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~~-i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~ 354 (499)
..+|+...-.|+ ..++|++.+.+.+..+. +.++||+.+++++|+++| +.+.|||+|+ ..
T Consensus 46 -------------~~~~~~~~~~~v---~~l~g~~~~~v~~~~~~~~~l~~ga~elv~~lk~~G---~~v~iiSgg~-~~ 105 (212)
T COG0560 46 -------------ELDFEESLRLRV---ALLKGLPVEVLEEVREEFLRLTPGAEELVAALKAAG---AKVVIISGGF-TF 105 (212)
T ss_pred -------------cccHHHHHHHHH---HHhCCCCHHHHHHHHHhcCcCCccHHHHHHHHHHCC---CEEEEEcCCh-HH
Confidence 113444444555 68999999999999998 999999999999999999 9999999998 57
Q ss_pred HHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 355 LIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 355 ~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
+++++.+..|+ .+++||++..++|++||.+.+++|.+.+|..+++++....+.+ ..++++||||.||++||..||.|
T Consensus 106 lv~~ia~~lg~--d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~-~~~~~a~gDs~nDlpml~~ag~~ 182 (212)
T COG0560 106 LVEPIAERLGI--DYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIP-LEETVAYGDSANDLPMLEAAGLP 182 (212)
T ss_pred HHHHHHHHhCC--chheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCC-HHHeEEEcCchhhHHHHHhCCCC
Confidence 99999888764 7899999999889999999999999999999999999887764 46899999999999999999999
Q ss_pred EEEcCCchHHhhhhhhCCcc
Q 010855 435 IVIGSSSSLRRLGDHFGVSF 454 (499)
Q Consensus 435 iv~~~~~~L~~~~~~~gi~~ 454 (499)
|++.+++.|.+.++..+++.
T Consensus 183 ia~n~~~~l~~~a~~~~~~~ 202 (212)
T COG0560 183 IAVNPKPKLRALADVRIWPI 202 (212)
T ss_pred eEeCcCHHHHHHHHHhcChh
Confidence 99999999999999999876
No 9
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.90 E-value=5e-23 Score=198.52 Aligned_cols=192 Identities=16% Similarity=0.183 Sum_probs=138.7
Q ss_pred EEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhhcCCH
Q 010855 200 TLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAEFEY 279 (499)
Q Consensus 200 ~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~~~~ 279 (499)
+|+||||||||..|++..+++.. ..+.|..+.+.++.+. .++
T Consensus 1 ~~~fDFDgTit~~d~~~~~~~~~-----------------------~~~~~~~~~~~~~~g~---------------~~~ 42 (214)
T TIGR03333 1 FIICDFDGTITNNDNIISIMKQF-----------------------APPEWEALKDGVLSKT---------------LSI 42 (214)
T ss_pred CEEeccCCCCCcchhHHHHHHHh-----------------------CcHHHHHHHHHHHcCC---------------ccH
Confidence 48999999999999988766531 2356666655444321 111
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHh-hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHH
Q 010855 280 EGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWAS-QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRS 358 (499)
Q Consensus 280 ~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~-~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~ 358 (499)
.+.. .++. ..++.-..+++.+++ +.+.++||+.+++++++++| ++++|+|+|. ..+|++
T Consensus 43 ~e~~--------------~~~~--~~~~~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~~~i~~ 102 (214)
T TIGR03333 43 QEGV--------------GRMF--GLLPSSLKEEITSFVLETAEIREGFREFVAFINEHG---IPFYVISGGM-DFFVYP 102 (214)
T ss_pred HHHH--------------HHHH--hhCCCchHHHHHHHHHhcCcccccHHHHHHHHHHCC---CeEEEECCCc-HHHHHH
Confidence 1111 1111 122222345777764 46899999999999999999 9999999996 789999
Q ss_pred HHHcCCCCceEEEeeceEeeCCeeeccccc------cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 359 AFASGDLNAFRVHSNELVYEESISTGEIVN------KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 359 ~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~------~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
+++.++ ....|+||++.++++..++.... ...||.||..+++++... +.++||||||.+|+++++.||
T Consensus 103 il~~~~-~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~~l~~~~~~-----~~~~i~iGDg~~D~~~a~~Ad 176 (214)
T TIGR03333 103 LLEGIV-EKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPSLIRKLSEP-----NDYHIVIGDSVTDVEAAKQSD 176 (214)
T ss_pred HHHhhC-CcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHHHHHHHhhc-----CCcEEEEeCCHHHHHHHHhCC
Confidence 998763 24679999999987654443221 123488999999987742 357899999999999999999
Q ss_pred ccEEEcCCchHHhhhhhhCCcccccc
Q 010855 433 IGIVIGSSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 433 igiv~~~~~~L~~~~~~~gi~~~p~~ 458 (499)
+ +++++ .|..+|++.|+++.||.
T Consensus 177 ~--~~ar~-~l~~~~~~~~~~~~~~~ 199 (214)
T TIGR03333 177 L--CFARD-YLLNECEELGLNHAPFQ 199 (214)
T ss_pred e--eEehH-HHHHHHHHcCCCccCcC
Confidence 4 55554 68899999999999985
No 10
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.88 E-value=7.6e-22 Score=200.94 Aligned_cols=192 Identities=18% Similarity=0.146 Sum_probs=152.7
Q ss_pred CCceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhh
Q 010855 196 EGHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVA 275 (499)
Q Consensus 196 ~~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~ 275 (499)
+.+.+++||||||++..++++.+++... ....+..+++.++.+.
T Consensus 108 ~~~~LvvfDmDGTLI~~e~i~eia~~~g----------------------~~~~v~~it~~~m~Ge-------------- 151 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQIECIDEIAKLAG----------------------TGEEVAEVTERAMRGE-------------- 151 (322)
T ss_pred cCCCEEEEECCCCCcchHHHHHHHHHhC----------------------CchHHHHHHHHHHcCC--------------
Confidence 3556999999999999999998887532 2334444544443211
Q ss_pred cCCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHH
Q 010855 276 EFEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDL 355 (499)
Q Consensus 276 ~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~ 355 (499)
.+|+.....|+ ..++|.+.+.+.+..+.++++||+.++++.|+++| +++.|+|+|+ ..+
T Consensus 152 --------------ldf~esl~~rv---~~l~g~~~~il~~v~~~l~l~pGa~elL~~Lk~~G---~~~aIvSgg~-~~~ 210 (322)
T PRK11133 152 --------------LDFEASLRQRV---ATLKGADANILQQVRENLPLMPGLTELVLKLQALG---WKVAIASGGF-TYF 210 (322)
T ss_pred --------------cCHHHHHHHHH---HHhCCCCHHHHHHHHHhCCCChhHHHHHHHHHHcC---CEEEEEECCc-chh
Confidence 11222333344 45688887777777788999999999999999999 9999999998 568
Q ss_pred HHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccE
Q 010855 356 IRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGI 435 (499)
Q Consensus 356 I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigi 435 (499)
++.++++.++ .++++|.+.+.+|+.||.+.+.++.+..|.+.++++.+..+.+ ..++|+||||.||++|+..||+||
T Consensus 211 ~~~l~~~Lgl--d~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la~~lgi~-~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 211 ADYLRDKLRL--DAAVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLAQEYEIP-LAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HHHHHHHcCC--CeEEEeEEEEECCEEEeEecCccCCcccHHHHHHHHHHHcCCC-hhhEEEEECCHHHHHHHHHCCCeE
Confidence 8888877664 6889999999999999998887778889999999999887763 578999999999999999999999
Q ss_pred EEcCCchHHhhh
Q 010855 436 VIGSSSSLRRLG 447 (499)
Q Consensus 436 v~~~~~~L~~~~ 447 (499)
++.+++.+++.+
T Consensus 288 A~nAkp~Vk~~A 299 (322)
T PRK11133 288 AYHAKPKVNEQA 299 (322)
T ss_pred EeCCCHHHHhhC
Confidence 998888886543
No 11
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.88 E-value=9.2e-22 Score=190.29 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=139.2
Q ss_pred ceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhhcC
Q 010855 198 HLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAEF 277 (499)
Q Consensus 198 ~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~~ 277 (499)
+.+|+||||||||..|+...+++- + ..+.|+.+.+.|+++...
T Consensus 3 ~~~vifDfDgTi~~~d~~~~~~~~---~--------------------~~~~~~~i~~~~~~g~~~-------------- 45 (219)
T PRK09552 3 SIQIFCDFDGTITNNDNIIAIMKK---F--------------------APPEWEELKDDILSQELS-------------- 45 (219)
T ss_pred CcEEEEcCCCCCCcchhhHHHHHH---h--------------------CHHHHHHHHHHHHhCCcC--------------
Confidence 559999999999999997654431 1 123466666655543211
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHh-hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHH
Q 010855 278 EYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWAS-QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLI 356 (499)
Q Consensus 278 ~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~-~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I 356 (499)
+.+ .++ .++ ..+.+...+++.+.. +++.++||+.+++++++++| +++.|+|+|+ ..+|
T Consensus 46 -~~~---~~~----------~~~---~~l~~~~~~~~~~~~~~~~~l~pG~~e~l~~l~~~g---~~~~IvS~~~-~~~i 104 (219)
T PRK09552 46 -IQE---GVG----------QMF---QLLPSNLKEEIIQFLLETAEIREGFHEFVQFVKENN---IPFYVVSGGM-DFFV 104 (219)
T ss_pred -HHH---HHH----------HHH---HhCCCCchHHHHHHHHhCCCcCcCHHHHHHHHHHcC---CeEEEECCCc-HHHH
Confidence 111 001 111 223444456676654 57899999999999999999 9999999997 7899
Q ss_pred HHHHHcCCCCceEEEeeceEeeCCeeecccccc------CCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHh
Q 010855 357 RSAFASGDLNAFRVHSNELVYEESISTGEIVNK------LESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLE 430 (499)
Q Consensus 357 ~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~------~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~ 430 (499)
+++|++. +....|+||.+.++++..+.....+ ..++.+|..+++++... +.++||||||.+|+++++.
T Consensus 105 ~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~~~~-----~~~~i~iGDs~~Di~aa~~ 178 (219)
T PRK09552 105 YPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKLSDT-----NDFHIVIGDSITDLEAAKQ 178 (219)
T ss_pred HHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHhccC-----CCCEEEEeCCHHHHHHHHH
Confidence 9999987 6557799999988765443222111 12467899988876532 3579999999999999999
Q ss_pred cCccEEEcCCchHHhhhhhhCCcccccc
Q 010855 431 ADIGIVIGSSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 431 Adigiv~~~~~~L~~~~~~~gi~~~p~~ 458 (499)
||+ ++++ ..|.++|++.|++++||.
T Consensus 179 Ag~--~~a~-~~l~~~~~~~~~~~~~~~ 203 (219)
T PRK09552 179 ADK--VFAR-DFLITKCEELGIPYTPFE 203 (219)
T ss_pred CCc--ceeH-HHHHHHHHHcCCCccccC
Confidence 985 4444 478899999999999985
No 12
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.85 E-value=1.1e-20 Score=183.05 Aligned_cols=128 Identities=17% Similarity=0.245 Sum_probs=103.0
Q ss_pred cCCCHHHHHHHhhcCCCChhHHHHHHHHHH--cCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeC-Ce
Q 010855 307 KGLNLEDIKWASQHLIFQDGCRRFFQNTIK--STNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEE-SI 381 (499)
Q Consensus 307 ~Gi~~~~l~~~~~~i~lr~G~~efl~~l~~--~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~-g~ 381 (499)
.|++.++|.+..+.+++.||+.++++.+.+ .| .+++|||.+- ..||+.+|+++|+.. .+|++|...+++ |.
T Consensus 56 ~gvt~~~I~~~l~~ip~~pgm~~~l~~l~~~~~~---~~~~IiSDaN-s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~ 131 (234)
T PF06888_consen 56 QGVTPEDIRDALRSIPIDPGMKELLRFLAKNQRG---FDLIIISDAN-SFFIETILEHHGLRDCFSEIFTNPACFDADGR 131 (234)
T ss_pred cCCCHHHHHHHHHcCCCCccHHHHHHHHHhcCCC---ceEEEEeCCc-HhHHHHHHHhCCCccccceEEeCCceecCCce
Confidence 488999999999999999999999999954 56 9999999995 789999999999864 389999999975 65
Q ss_pred ee-cccc---ccCC-ChhhhHHHHHHHHhhcCC--CCCceEEEEcCCcccHHHHHh---cCccEEEcCC
Q 010855 382 ST-GEIV---NKLE-SPLEKLQAFNDILKDHSN--DEQNLTVYIGGSPGDLLCLLE---ADIGIVIGSS 440 (499)
Q Consensus 382 ~t-G~~~---~~~~-~g~~K~~~l~~~~~~~~~--~~~~~vIyiGDs~tDl~~l~~---Adigiv~~~~ 440 (499)
+. .++. ++.| ...||..+|++++..... ..+.++||||||.||+|+++. .| +++.++
T Consensus 132 l~v~pyh~h~C~~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D--~v~~R~ 198 (234)
T PF06888_consen 132 LRVRPYHSHGCSLCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRD--VVFPRK 198 (234)
T ss_pred EEEeCccCCCCCcCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCC--EEecCC
Confidence 33 2333 3322 347999999999976311 135789999999999999986 55 677765
No 13
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.84 E-value=1.4e-19 Score=174.07 Aligned_cols=132 Identities=9% Similarity=0.036 Sum_probs=108.6
Q ss_pred hhhccCCCHHHHHHHhh--------cCCCChhHHHHHH-HHHHcCCCcccEEEEeccCChHHHHHHHHcCCC-CceEEEe
Q 010855 303 SGVLKGLNLEDIKWASQ--------HLIFQDGCRRFFQ-NTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL-NAFRVHS 372 (499)
Q Consensus 303 ~~~f~Gi~~~~l~~~~~--------~i~lr~G~~efl~-~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl-~~~~I~a 372 (499)
..+|+|++.+++.+.++ ...++||+.+.++ .++++| ++++|||++. ..+++++++..++ ..++++|
T Consensus 67 ~~~~~g~~~~~l~~~~~~f~~~~~~~~~l~pga~e~L~~~l~~~G---~~v~IvSas~-~~~~~~ia~~~~~~~~~~~i~ 142 (210)
T TIGR01545 67 WACTFGHREAHLQDLEADFVAAFRDKVTAFPLVAERLRQYLESSD---ADIWLITGSP-QPLVEAVYFDSNFIHRLNLIA 142 (210)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhCC---CEEEEEcCCc-HHHHHHHHHhccccccCcEEE
Confidence 46789999998877653 3468999999997 556679 9999999986 6788888876443 4478999
Q ss_pred eceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHh
Q 010855 373 NELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRR 445 (499)
Q Consensus 373 N~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~ 445 (499)
+++++.+| |.+.+.+|.|..|++++++++.. .....++||||.||++||..||.+++|.+++.|.+
T Consensus 143 t~le~~~g---g~~~g~~c~g~~Kv~rl~~~~~~----~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~~L~~ 208 (210)
T TIGR01545 143 SQIERGNG---GWVLPLRCLGHEKVAQLEQKIGS----PLKLYSGYSDSKQDNPLLAFCEHRWRVSKRGELQQ 208 (210)
T ss_pred EEeEEeCC---ceEcCccCCChHHHHHHHHHhCC----ChhheEEecCCcccHHHHHhCCCcEEECcchHhcc
Confidence 99998655 66777899999999999998842 23456799999999999999999999999988864
No 14
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.84 E-value=3e-20 Score=172.68 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=101.1
Q ss_pred hhccCCCHHHHHH-H-hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEee-CC
Q 010855 304 GVLKGLNLEDIKW-A-SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYE-ES 380 (499)
Q Consensus 304 ~~f~Gi~~~~l~~-~-~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~-~g 380 (499)
..++|...+++.+ + .+.+.++||+.++++.++++| ++++|+|+|. ..+|+++++.+|+ ..+++|.+.++ +|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~ivS~~~-~~~i~~~~~~~g~--~~~~~~~~~~~~~g 126 (177)
T TIGR01488 53 ALLHRSRSEEVAKEFLARQVALRPGARELISWLKERG---IDTVIVSGGF-DFFVEPVAEKLGI--DDVFANRLEFDDNG 126 (177)
T ss_pred HHhCCCCHHHHHHHHHHhcCCcCcCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCC--chheeeeEEECCCC
Confidence 4567777566665 5 467889999999999999999 9999999997 7899999998876 47899999995 68
Q ss_pred eeeccccc-cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc
Q 010855 381 ISTGEIVN-KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA 431 (499)
Q Consensus 381 ~~tG~~~~-~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A 431 (499)
..+|++.+ .++.+.+|...++++....+.+ +.+++|||||.+|++|++.|
T Consensus 127 ~~~g~~~~~~~~~~~~K~~~l~~~~~~~~~~-~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 127 LLTGPIEGQVNPEGECKGKVLKELLEESKIT-LKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred EEeCccCCcccCCcchHHHHHHHHHHHhCCC-HHHEEEEeCCHHHHHHHhcC
Confidence 88988765 5677899999999988765542 46899999999999999865
No 15
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.83 E-value=1.5e-19 Score=174.28 Aligned_cols=137 Identities=21% Similarity=0.247 Sum_probs=115.8
Q ss_pred hccCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeec
Q 010855 305 VLKGLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTG 384 (499)
Q Consensus 305 ~f~Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG 384 (499)
.|.+.+.+.+.+..+.+.++||+.++++.++++| ++++|||+|+ ..+++.+++..|+ ..+++|.+.++++.++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~~i--~~~~~~~~~~~~~~~~~ 141 (219)
T TIGR00338 68 LLKGLPVELLKEVRENLPLTEGAEELVKTLKEKG---YKVAVISGGF-DLFAEHVKDKLGL--DAAFANRLEVEDGKLTG 141 (219)
T ss_pred HhCCCCHHHHHHHHhcCCcCCCHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCC--CceEeeEEEEECCEEEE
Confidence 4567788888888888999999999999999999 9999999997 7899999988776 45899999999888888
Q ss_pred cccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHhhhh
Q 010855 385 EIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRRLGD 448 (499)
Q Consensus 385 ~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~~~~ 448 (499)
.+.++.+.+.+|...++.++...+.+ +.+++|||||.+|++++..|++++++.+++.+.+.++
T Consensus 142 ~~~~~~~~~~~k~~~~~~~~~~~~~~-~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~~~~~~a~ 204 (219)
T TIGR00338 142 LVEGPIVDASYKGKTLLILLRKEGIS-PENTVAVGDGANDLSMIKAAGLGIAFNAKPKLQQKAD 204 (219)
T ss_pred EecCcccCCcccHHHHHHHHHHcCCC-HHHEEEEECCHHHHHHHHhCCCeEEeCCCHHHHHhch
Confidence 77766556667999999888776653 5689999999999999999999999988776765443
No 16
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=99.83 E-value=3.3e-20 Score=179.28 Aligned_cols=200 Identities=19% Similarity=0.298 Sum_probs=142.9
Q ss_pred ccccccccHHHHHHHHHHHHHHHHhhhcCcchhhcCCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhh--
Q 010855 242 SSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAEFEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQ-- 319 (499)
Q Consensus 242 ~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~-- 319 (499)
+||.+....+.+++.|.++..+++++|+|+|..+.++.+++.+ .|.+||.++++.+++. |++++++.++++
T Consensus 15 sshgil~~~~~~~~~~~~k~~~L~~kY~PIE~dp~~s~eEK~p---~M~EWw~kah~llv~~----~l~k~~i~~~V~~s 87 (246)
T PF05822_consen 15 SSHGILENSKLLPEEYRKKLKELFEKYYPIEIDPTMSIEEKIP---HMEEWWTKAHELLVEQ----GLTKSEIEEAVKES 87 (246)
T ss_dssp -HHHHHHTSTTS-HHHHHHHHHHHHHHHHHHT-SSS-HHHHHH---HHHHHHHHHHHHHHHH----T-BGGGHHHHHHCS
T ss_pred ChHHHHhcCCcCCHHHHHHHHHHHhhccccccCCCCCHHHHHH---HHHHHHHHHHHHHHhc----CcCHHHHHHHHHhc
Confidence 4566666777889999999999999999999998899999886 6889999999999987 469999999986
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCC--CceEEEeeceEeeC-CeeeccccccCCChhhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL--NAFRVHSNELVYEE-SISTGEIVNKLESPLEK 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl--~~~~I~aN~l~~~~-g~~tG~~~~~~~~g~~K 396 (499)
++.||+|+.+|++.|.+++ +|+.|+|+|. +++|+.+|++.+. ++++|+||.|.|++ |+..| |.++.....+|
T Consensus 88 ~i~LRdg~~~~f~~L~~~~---IP~lIFSAGl-gdvI~~vL~q~~~~~~Nv~VvSN~M~Fd~~g~l~g-F~~~lIH~~NK 162 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHN---IPLLIFSAGL-GDVIEEVLRQAGVFHPNVKVVSNFMDFDEDGVLVG-FKGPLIHTFNK 162 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT-----EEEEEEEE-HHHHHHHHHHTT--BTTEEEEEE-EEE-TTSBEEE-E-SS---TT-H
T ss_pred chhhhcCHHHHHHHHHhcC---CCEEEEeCCc-HHHHHHHHHHcCCCCCCeEEEeeeEEECCcceEee-cCCCceEEeeC
Confidence 6899999999999999999 9999999998 8999999998764 67999999999975 77776 45556666667
Q ss_pred HH-HHH--HHHhhcCCCCCceEEEEcCCcccHHHHHhc-Cc----cEEEcCC---chHHhhhhhhCCccc
Q 010855 397 LQ-AFN--DILKDHSNDEQNLTVYIGGSPGDLLCLLEA-DI----GIVIGSS---SSLRRLGDHFGVSFV 455 (499)
Q Consensus 397 ~~-~l~--~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A-di----giv~~~~---~~L~~~~~~~gi~~~ 455 (499)
.. .++ .+... ...+.+++..|||.+|+.|..-. +. -|-|-+. ..|.+|.+.+.|-++
T Consensus 163 n~~~l~~~~~~~~--~~~R~NvlLlGDslgD~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv 230 (246)
T PF05822_consen 163 NESALEDSPYFKQ--LKKRTNVLLLGDSLGDLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLV 230 (246)
T ss_dssp HHHHHTTHHHHHC--TTT--EEEEEESSSGGGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEE
T ss_pred CcccccCchHHHH--hccCCcEEEecCccCChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEE
Confidence 65 331 22222 22468999999999999998766 32 2223222 468888888876554
No 17
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.82 E-value=1.4e-19 Score=173.04 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=111.8
Q ss_pred cCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeC-Ceeecc
Q 010855 307 KGLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEE-SISTGE 385 (499)
Q Consensus 307 ~Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~-g~~tG~ 385 (499)
.|++.+++++..++++++||+.+++++++++ .++.|||+|+ ..+++++++..|+ .+++||++.+++ |.+||.
T Consensus 53 ~g~~~~~i~~~~~~i~l~pga~ell~~lk~~----~~~~IVS~~~-~~~~~~il~~lgi--~~~~an~l~~~~~g~~tG~ 125 (203)
T TIGR02137 53 HGLKLGDIQEVIATLKPLEGAVEFVDWLRER----FQVVILSDTF-YEFSQPLMRQLGF--PTLLCHKLEIDDSDRVVGY 125 (203)
T ss_pred CCCCHHHHHHHHHhCCCCccHHHHHHHHHhC----CeEEEEeCCh-HHHHHHHHHHcCC--chhhceeeEEecCCeeECe
Confidence 3999999999999999999999999999985 4899999998 6799999998876 479999999988 888886
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHhhhhhh
Q 010855 386 IVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRRLGDHF 450 (499)
Q Consensus 386 ~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~~~~~~ 450 (499)
.. ..+.+|..+++.+... +.++++||||.||++|+..||+||++++++.+.+.+..+
T Consensus 126 ~~---~~~~~K~~~l~~l~~~-----~~~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~~~~~~ 182 (203)
T TIGR02137 126 QL---RQKDPKRQSVIAFKSL-----YYRVIAAGDSYNDTTMLSEAHAGILFHAPENVIREFPQF 182 (203)
T ss_pred ee---cCcchHHHHHHHHHhh-----CCCEEEEeCCHHHHHHHHhCCCCEEecCCHHHHHhCCCC
Confidence 43 3456899999988532 247999999999999999999999999999998777665
No 18
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.82 E-value=4.5e-19 Score=168.70 Aligned_cols=134 Identities=19% Similarity=0.156 Sum_probs=115.2
Q ss_pred hhhccCCCHHHHHHHhhc-------CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 303 SGVLKGLNLEDIKWASQH-------LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 303 ~~~f~Gi~~~~l~~~~~~-------i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
...|+|++.+++.++++. ..++||+.++++.++++| .+++|+|++. ..+++.+++..|+ .+++++++
T Consensus 61 ~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g---~~v~ivS~s~-~~~v~~~~~~lg~--~~~~~~~l 134 (202)
T TIGR01490 61 LDALAGLLEEDVRAIVEEFVNQKIESILYPEARDLIRWHKAEG---HTIVLVSASL-TILVKPLARILGI--DNAIGTRL 134 (202)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHcCC--cceEecce
Confidence 357899999999888762 468999999999999999 9999999997 6799999988765 56899999
Q ss_pred Ee-eCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchH
Q 010855 376 VY-EESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSL 443 (499)
Q Consensus 376 ~~-~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L 443 (499)
.+ ++|.+||.+.++++.|..|...++++++..+.+ ...+++||||.+|++|+..|++++++.+++.|
T Consensus 135 ~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~~~~~~~-~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~~l 202 (202)
T TIGR01490 135 EESEDGIYTGNIDGNNCKGEGKVHALAELLAEEQID-LKDSYAYGDSISDLPLLSLVGHPYVVNPDKKL 202 (202)
T ss_pred EEcCCCEEeCCccCCCCCChHHHHHHHHHHHHcCCC-HHHcEeeeCCcccHHHHHhCCCcEEeCCCCCC
Confidence 88 668999998888888999999999998766552 46789999999999999999999998876543
No 19
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=4.7e-20 Score=174.86 Aligned_cols=228 Identities=15% Similarity=0.232 Sum_probs=168.0
Q ss_pred CCCCceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccc-cHHHHHHHHHHHHHHHHhhhcCcc
Q 010855 194 PVEGHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRN-TWDVLSTKYTEEYEQCIESIMSSE 272 (499)
Q Consensus 194 ~~~~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~w~~~~~~y~~~~~~~~~~~~p~~ 272 (499)
+.+.++++|+|||.|||++-|- .++.+++ ++..-+ ..+.+...|.++..+++.+|.|+|
T Consensus 34 gga~~~~vIsdfd~TLSrfa~~--------~G~r~pS------------~~~Vfd~~~~~~~~e~~~k~~~LyhkY~PIE 93 (298)
T KOG3128|consen 34 GGAGKLQVISDFDYTLSRFATE--------QGKRCPS------------CFGVFDDNVKRLKPECRAKFVALYHKYYPIE 93 (298)
T ss_pred CCccceeEeecCchhHHHHHHh--------hcCcCCc------------cccchhhhhhcCCHHHHHHHHHHHhhccCcc
Confidence 4578999999999999985321 2444433 333444 677788889999999999999999
Q ss_pred hhhcCCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCcccEEEEecc
Q 010855 273 AVAEFEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQ--HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYC 350 (499)
Q Consensus 273 ~~~~~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~--~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g 350 (499)
.++.++++++.+ .|.+||.++++.+++. |+++++|+++++ ++.||+|+.+|+..|+.++ +|+.|.|+|
T Consensus 94 idP~ltieEKvp---~MeeWW~kSH~Lliq~----~f~k~~I~~~Va~s~i~lReg~~~ff~~L~~~~---IP~~iFSAG 163 (298)
T KOG3128|consen 94 IDPVLTIEEKVP---HMEEWWTKSHELLIQG----GFSKNAIDDIVAESNIALREGYEEFFEALQAHE---IPLLIFSAG 163 (298)
T ss_pred cCCCCChhhhch---HHHHHHhcccceeecC----CcCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC---CceEEEecc
Confidence 999999999987 5789999999999875 579999999976 7899999999999999999 999999999
Q ss_pred CChHHHHHHHHcCC--CCceEEEeeceEee-CCeeeccccccCCChhhhHH-HHHH---HHhhcCCCCCceEEEEcCCcc
Q 010855 351 WCGDLIRSAFASGD--LNAFRVHSNELVYE-ESISTGEIVNKLESPLEKLQ-AFND---ILKDHSNDEQNLTVYIGGSPG 423 (499)
Q Consensus 351 ~s~~~I~~~L~~~g--l~~~~I~aN~l~~~-~g~~tG~~~~~~~~g~~K~~-~l~~---~~~~~~~~~~~~vIyiGDs~t 423 (499)
+ .+.|+.++++.. .++.+++||.+.|+ +|...| |..+.....+|.. +++. +... ...+.++|+.|||.+
T Consensus 164 i-gdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~g-F~~~Lihtfnkn~~v~~~~s~yf~~--~~~~~nVillGdsig 239 (298)
T KOG3128|consen 164 I-GDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCG-FSQPLIHTFNKNSSVLQNESEYFHQ--LAGRVNVILLGDSIG 239 (298)
T ss_pred h-HHHHHHHHHHHhccCccHHhhhhhhhhcccchhhh-hhHHHHHHHccchHHHHhhhHHHhh--ccCCceEEEeccccc
Confidence 8 889999987642 25788999999997 354333 2222223333322 2222 1111 123678999999999
Q ss_pred cHHHHHhcC-c------cEEEcC-CchHHhhhhhhCCccc
Q 010855 424 DLLCLLEAD-I------GIVIGS-SSSLRRLGDHFGVSFV 455 (499)
Q Consensus 424 Dl~~l~~Ad-i------giv~~~-~~~L~~~~~~~gi~~~ 455 (499)
|+.|...+- . |..... ..++.+|.+++.|-.+
T Consensus 240 dl~ma~gv~~~~~iLkig~l~d~vee~~~~ymd~ydIvL~ 279 (298)
T KOG3128|consen 240 DLHMADGVPRVGHILKIGYLNDSVEEALEKYMDSYDIVLV 279 (298)
T ss_pred cchhhcCCcccccceeeecccchHHHHHHHHHhhcceEEe
Confidence 999988763 2 222221 2467778888776543
No 20
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.80 E-value=2e-19 Score=164.66 Aligned_cols=176 Identities=17% Similarity=0.163 Sum_probs=138.4
Q ss_pred CceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhhc
Q 010855 197 GHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAE 276 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 276 (499)
.+-+|+||.|+|++..+.|+.|+.+....+ ....++.
T Consensus 15 ~~~aVcFDvDSTvi~eEgIdelA~~~G~~~----------------------~Va~~T~--------------------- 51 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGIDELAAYCGVGE----------------------AVAEVTR--------------------- 51 (227)
T ss_pred hcCeEEEecCcchhHHhhHHHHHHHhCchH----------------------HHHHHHH---------------------
Confidence 344999999999999999999998764321 1111221
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHh--hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChH
Q 010855 277 FEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWAS--QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGD 354 (499)
Q Consensus 277 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~--~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~ 354 (499)
..|.+...|+++| ..|+ .+|+| +..++.++. ++..|.||.++|+..|+++| ..++++|+|| ..
T Consensus 52 rAMng~~~F~eaL-------~~Rl---~llqp-~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~---~~v~liSGGF-~~ 116 (227)
T KOG1615|consen 52 RAMNGEADFQEAL-------AARL---SLLQP-LQVQVEQFVIKQKPTLTPGIRELVSRLHARG---TQVYLISGGF-RQ 116 (227)
T ss_pred HHhCCCCcHHHHH-------HHHH---HHhcc-cHHHHHHHHhcCCCccCCCHHHHHHHHHHcC---CeEEEEcCCh-HH
Confidence 2344444544444 4566 78899 556666664 37899999999999999999 9999999999 78
Q ss_pred HHHHHHHcCCCCceEEEeeceEee-CCeeec-cccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 355 LIRSAFASGDLNAFRVHSNELVYE-ESISTG-EIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 355 ~I~~~L~~~gl~~~~I~aN~l~~~-~g~~tG-~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
+|.++..+.|++...|+||.|.|+ +|.++| ....+...+.+|..+++.+++..+ ...+++||||.||++|+.-|+
T Consensus 117 ~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~~---~~~~~mvGDGatDlea~~pa~ 193 (227)
T KOG1615|consen 117 LIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNYN---YKTIVMVGDGATDLEAMPPAD 193 (227)
T ss_pred HHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCCC---hheeEEecCCccccccCCchh
Confidence 999999999998888999999997 488776 566677778899999999987543 356889999999999999987
Q ss_pred c
Q 010855 433 I 433 (499)
Q Consensus 433 i 433 (499)
.
T Consensus 194 a 194 (227)
T KOG1615|consen 194 A 194 (227)
T ss_pred h
Confidence 3
No 21
>PRK11590 hypothetical protein; Provisional
Probab=99.77 E-value=2.3e-17 Score=158.73 Aligned_cols=129 Identities=10% Similarity=0.016 Sum_probs=105.0
Q ss_pred ccCCCHHHHHHHhh--------cCCCChhHHHHHH-HHHHcCCCcccEEEEeccCChHHHHHHHHcCCC-CceEEEeece
Q 010855 306 LKGLNLEDIKWASQ--------HLIFQDGCRRFFQ-NTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL-NAFRVHSNEL 375 (499)
Q Consensus 306 f~Gi~~~~l~~~~~--------~i~lr~G~~efl~-~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl-~~~~I~aN~l 375 (499)
+.|++.+++.+..+ .+.+.||+.+.++ .++++| +++.|+|++. ..+++++++..++ ..++++|+++
T Consensus 71 ~~g~~~~~~~~~~~~f~~~~~~~~~~~pga~e~L~~~l~~~G---~~l~IvSas~-~~~~~~il~~l~~~~~~~~i~t~l 146 (211)
T PRK11590 71 TFGHSEARLQALEADFVRWFRDNVTAFPVVQERLTTYLLSSD---ADVWLITGSP-QPLVEQVYFDTPWLPRVNLIASQM 146 (211)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhCcCCccHHHHHHHHHHhCC---CEEEEEeCCc-HHHHHHHHHHccccccCceEEEEE
Confidence 44667666655432 2577999999995 566678 8999999996 6789999988763 3478999999
Q ss_pred EeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHh
Q 010855 376 VYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRR 445 (499)
Q Consensus 376 ~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~ 445 (499)
++ .+||.+.+.+|.|..|++++++++.. .....++||||.+|++||..|+.++++++++.|.+
T Consensus 147 ~~---~~tg~~~g~~c~g~~K~~~l~~~~~~----~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~~l~~ 209 (211)
T PRK11590 147 QR---RYGGWVLTLRCLGHEKVAQLERKIGT----PLRLYSGYSDSKQDNPLLYFCQHRWRVTPRGELQQ 209 (211)
T ss_pred EE---EEccEECCccCCChHHHHHHHHHhCC----CcceEEEecCCcccHHHHHhCCCCEEECccHHhhc
Confidence 77 68899999999999999999998842 23456799999999999999999999999988864
No 22
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.76 E-value=2.5e-17 Score=156.06 Aligned_cols=134 Identities=19% Similarity=0.151 Sum_probs=106.7
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeC-Ceeeccc
Q 010855 308 GLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEE-SISTGEI 386 (499)
Q Consensus 308 Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~-g~~tG~~ 386 (499)
....+++.+..+++.++||+.+++++|+++| ++++|||+|+ ..+++.+++..|+ ..+++|.+.+++ |..+|..
T Consensus 66 ~~~~~~~~~~~~~~~~~~g~~e~l~~l~~~g---~~~~IvS~~~-~~~~~~~l~~~g~--~~~~~~~~~~~~~g~~~p~~ 139 (201)
T TIGR01491 66 RLRREEVEEIFKEISLRDYAEELVRWLKEKG---LKTAIVSGGI-MCLAKKVAEKLNP--DYVYSNELVFDEKGFIQPDG 139 (201)
T ss_pred CCCHHHHHHHHHhCCCCccHHHHHHHHHHCC---CEEEEEeCCc-HHHHHHHHHHhCC--CeEEEEEEEEcCCCeEecce
Confidence 3466778777788999999999999999999 9999999997 7899999998775 568899888854 5656531
Q ss_pred cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHhhhhh
Q 010855 387 VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRRLGDH 449 (499)
Q Consensus 387 ~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~~~~~ 449 (499)
.. .+...+|...++++++..+.+ ..+++|||||.+|++|+..||+++++++++.|+++++.
T Consensus 140 ~~-~~~~~~k~~~~~~~~~~~~~~-~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~~~~~a~~ 200 (201)
T TIGR01491 140 IV-RVTFDNKGEAVERLKRELNPS-LTETVAVGDSKNDLPMFEVADISISLGDEGHADYLAKD 200 (201)
T ss_pred ee-EEccccHHHHHHHHHHHhCCC-HHHEEEEcCCHhHHHHHHhcCCeEEECCCccchhhccc
Confidence 11 122346878888887765543 46899999999999999999999999888888877653
No 23
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.76 E-value=2.4e-17 Score=154.33 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=99.4
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeC-Ceeec
Q 010855 308 GLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEE-SISTG 384 (499)
Q Consensus 308 Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~-g~~tG 384 (499)
+++.+++.+...+++++||+.++++.++++| ++++|+|++- ...++.++++.++.. ..|+||++.+++ |.+++
T Consensus 58 ~~~~~~~~~~~~~~~l~~g~~~ll~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~ 133 (188)
T TIGR01489 58 GLKEDEILEVLKSAPIDPGFKEFIAFIKEHG---IDFIVISDGN-DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIV 133 (188)
T ss_pred CCCHHHHHHHHHhCCCCccHHHHHHHHHHcC---CcEEEEeCCc-HHHHHHHHHHcCChhheeEEeccCceECCCCcEEE
Confidence 5677888888888999999999999999999 9999999984 778999998887753 479999999975 66665
Q ss_pred cccc-----cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC
Q 010855 385 EIVN-----KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 385 ~~~~-----~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~ 439 (499)
.... +...|.+|..+++++.... +.++||||||.+|+++++.|| ++|++
T Consensus 134 ~~~~~~~~~~~~~g~~K~~~~~~~~~~~----~~~~i~iGD~~~D~~aa~~~d--~~~ar 187 (188)
T TIGR01489 134 WPHHCHGCCSCPCGCCKGKVIHKLSEPK----YQHIIYIGDGVTDVCPAKLSD--VVFAK 187 (188)
T ss_pred ecCCCCccCcCCCCCCHHHHHHHHHhhc----CceEEEECCCcchhchHhcCC--ccccC
Confidence 4332 3456778999999887642 367999999999999999998 56554
No 24
>PLN02954 phosphoserine phosphatase
Probab=99.73 E-value=5.7e-17 Score=156.80 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=123.9
Q ss_pred CceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhhc
Q 010855 197 GHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAE 276 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 276 (499)
...+|+||||||||..|++..+++... ..+.|..+.+.|+.+.
T Consensus 11 ~~k~viFDfDGTL~~~~~~~~~~~~~g----------------------~~~~~~~~~~~~~~g~--------------- 53 (224)
T PLN02954 11 SADAVCFDVDSTVCVDEGIDELAEFCG----------------------AGEAVAEWTAKAMGGS--------------- 53 (224)
T ss_pred cCCEEEEeCCCcccchHHHHHHHHHcC----------------------ChHHHHHHHHHHHCCC---------------
Confidence 345899999999999999877766321 2345665555444321
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhhc--CCCChhHHHHHHHHHHcCCCcccEEEEeccCChH
Q 010855 277 FEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQH--LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGD 354 (499)
Q Consensus 277 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~~--i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~ 354 (499)
.++.+-. + .++ ..++ .+.+++.++.+. ..++||+.+++++++++| ++++|+|+|. ..
T Consensus 54 ~~~~~~~---~----------~~~---~~~~-~~~~~~~~~~~~~~~~l~pg~~e~l~~l~~~g---~~~~IvS~~~-~~ 112 (224)
T PLN02954 54 VPFEEAL---A----------ARL---SLFK-PSLSQVEEFLEKRPPRLSPGIPELVKKLRARG---TDVYLVSGGF-RQ 112 (224)
T ss_pred CCHHHHH---H----------HHH---HHcC-CCHHHHHHHHHHccCCCCccHHHHHHHHHHCC---CEEEEECCCc-HH
Confidence 1111111 0 111 1112 245566665543 578999999999999999 9999999997 78
Q ss_pred HHHHHHHcCCCCceEEEeeceEeeC-Ceeeccccc-cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 355 LIRSAFASGDLNAFRVHSNELVYEE-SISTGEIVN-KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 355 ~I~~~L~~~gl~~~~I~aN~l~~~~-g~~tG~~~~-~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
+++.+++.+|++..++++|.+.+++ |..+|.... ..+.+..|...++++....+. .++||||||.+|+++++.++
T Consensus 113 ~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~~---~~~i~iGDs~~Di~aa~~~~ 189 (224)
T PLN02954 113 MIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHGY---KTMVMIGDGATDLEARKPGG 189 (224)
T ss_pred HHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHHcCC---CceEEEeCCHHHHHhhhcCC
Confidence 9999999988765579999999864 666764322 223456799989888876542 57999999999999988855
Q ss_pred ccEEE
Q 010855 433 IGIVI 437 (499)
Q Consensus 433 igiv~ 437 (499)
..+++
T Consensus 190 ~~~~~ 194 (224)
T PLN02954 190 ADLFI 194 (224)
T ss_pred CCEEE
Confidence 54444
No 25
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.70 E-value=1.4e-16 Score=148.88 Aligned_cols=188 Identities=15% Similarity=0.192 Sum_probs=134.8
Q ss_pred CceEEEEeCCcccccccchHHHHHHHHHhcCCCCCCCccchhhccccccccccHHHHHHHHHHHHHHHHhhhcCcchhhc
Q 010855 197 GHLTLFCDFDWTCTAFDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLRNTWDVLSTKYTEEYEQCIESIMSSEAVAE 276 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 276 (499)
++++++||||.||...|+-..+.+.+.. ......+.+.|-
T Consensus 12 ~ril~~FDFD~TIid~dSD~wVv~~lp~----------------------~~l~~qL~~t~p------------------ 51 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDNWVVDELPT----------------------TDLFNQLRDTYP------------------ 51 (256)
T ss_pred CcEEEEEecCceeecCCcchHHHHhccc----------------------chhHHHHHHhcc------------------
Confidence 7899999999999999998887775321 001111111111
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHH
Q 010855 277 FEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLI 356 (499)
Q Consensus 277 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I 356 (499)
..+|.....||.++--=+|++.++|++..+.+++.||+.++++.+.+.|. .++.|||.. ...||
T Consensus 52 -------------~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~lik~~ak~g~--~eliIVSDa-NsfFI 115 (256)
T KOG3120|consen 52 -------------KGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVRLIKSAAKLGC--FELIIVSDA-NSFFI 115 (256)
T ss_pred -------------cchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHHHHHHHHhCCC--ceEEEEecC-chhHH
Confidence 12455555566554334689999999999999999999999999999983 499999997 47899
Q ss_pred HHHHHcCCCC--ceEEEeeceEeeC-Ceee-cccc----c-cCCChhhhHHHHHHHHhhcCCC--CCceEEEEcCCcccH
Q 010855 357 RSAFASGDLN--AFRVHSNELVYEE-SIST-GEIV----N-KLESPLEKLQAFNDILKDHSND--EQNLTVYIGGSPGDL 425 (499)
Q Consensus 357 ~~~L~~~gl~--~~~I~aN~l~~~~-g~~t-G~~~----~-~~~~g~~K~~~l~~~~~~~~~~--~~~~vIyiGDs~tDl 425 (499)
+.+|+++++. ...|++|...++. |.+. -++. + .+....||..+|.++....-.+ .++++||+|||.||+
T Consensus 116 e~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~ 195 (256)
T KOG3120|consen 116 EEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDF 195 (256)
T ss_pred HHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCc
Confidence 9999999874 3479999998875 5432 2222 2 3455689999999887543111 245899999999999
Q ss_pred HHHHhcC-ccEEEcCC
Q 010855 426 LCLLEAD-IGIVIGSS 440 (499)
Q Consensus 426 ~~l~~Ad-igiv~~~~ 440 (499)
|+.+.-. --+++.++
T Consensus 196 CP~l~Lr~~D~ampRk 211 (256)
T KOG3120|consen 196 CPVLRLRACDVAMPRK 211 (256)
T ss_pred CcchhcccCceecccC
Confidence 9765532 13677665
No 26
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.60 E-value=2.8e-14 Score=135.96 Aligned_cols=119 Identities=24% Similarity=0.206 Sum_probs=96.0
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEee-CCeeeccc
Q 010855 308 GLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYE-ESISTGEI 386 (499)
Q Consensus 308 Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~-~g~~tG~~ 386 (499)
|++.+++....+.+.+.||+.++++.++++ +++.|+|++. ..+++.+++++++ ..+++|.+.++ ++..+|.-
T Consensus 54 ~~~~~~i~~~~~~~~~~pg~~e~L~~L~~~----~~~~IvS~~~-~~~~~~~l~~~gl--~~~f~~~~~~~~~~~i~~~~ 126 (205)
T PRK13582 54 GLGLADIQEVIATLDPLPGAVEFLDWLRER----FQVVILSDTF-YEFAGPLMRQLGW--PTLFCHSLEVDEDGMITGYD 126 (205)
T ss_pred CCCHHHHHHHHHhCCCCCCHHHHHHHHHhc----CCEEEEeCCc-HHHHHHHHHHcCC--chhhcceEEECCCCeEECcc
Confidence 678999999889999999999999999875 5899999997 7899999998876 35788988885 45556542
Q ss_pred cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCc
Q 010855 387 VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSS 441 (499)
Q Consensus 387 ~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~ 441 (499)
...+.+|...++++... +..++|||||.+|++++..|++|++++.+.
T Consensus 127 ---~~~p~~k~~~l~~~~~~-----~~~~v~iGDs~~D~~~~~aa~~~v~~~~~~ 173 (205)
T PRK13582 127 ---LRQPDGKRQAVKALKSL-----GYRVIAAGDSYNDTTMLGEADAGILFRPPA 173 (205)
T ss_pred ---ccccchHHHHHHHHHHh-----CCeEEEEeCCHHHHHHHHhCCCCEEECCCH
Confidence 12345788888766532 357999999999999999999999877654
No 27
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.60 E-value=4.2e-15 Score=139.60 Aligned_cols=99 Identities=20% Similarity=0.237 Sum_probs=78.4
Q ss_pred CCChhHH----HHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeC--CeeeccccccCCChhh
Q 010855 322 IFQDGCR----RFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEE--SISTGEIVNKLESPLE 395 (499)
Q Consensus 322 ~lr~G~~----efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~--g~~tG~~~~~~~~g~~ 395 (499)
.++||+. ++++.++++| ++++|||+|. ..+|+++++..|++..+++||++ +++ +..+|.+.+..+. +
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~---~~v~IvS~~~-~~~i~~~~~~~~i~~~~v~~~~~-~~~~~~~~~~~~~~~~~~--~ 157 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNG---IKVVIVSGSP-DEIIEPIAERLGIDDDNVIGNEL-FDNGGGIFTGRITGSNCG--G 157 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTT---SEEEEEEEEE-HHHHHHHHHHTTSSEGGEEEEEE-ECTTCCEEEEEEEEEEES--H
T ss_pred ccCcCchhhHHHHHHHHHHCC---CEEEEECCCc-HHHHHHHHHHcCCCceEEEEEee-eecccceeeeeECCCCCC--c
Confidence 3455555 9999999999 9999999996 78999999988888788999999 754 3566776654333 7
Q ss_pred hHHHHHHH---HhhcCCCCCceEEEEcCCcccHHHHH
Q 010855 396 KLQAFNDI---LKDHSNDEQNLTVYIGGSPGDLLCLL 429 (499)
Q Consensus 396 K~~~l~~~---~~~~~~~~~~~vIyiGDs~tDl~~l~ 429 (499)
|..+++++ ... +. ...+++|||||.+|++||+
T Consensus 158 K~~~l~~~~~~~~~-~~-~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 158 KAEALKELYIRDEE-DI-DPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHHHHHHHHHHHHH-TH-TCCEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHHHhhc-CC-CCCeEEEEECCHHHHHHhC
Confidence 99999999 221 11 2468999999999999985
No 28
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=99.59 E-value=1.8e-14 Score=146.09 Aligned_cols=150 Identities=17% Similarity=0.302 Sum_probs=135.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCChhhHHHHHHHHHHh-cCCcccccccccccchhh
Q 010855 7 PSLSHDEEDKLAIRKLRKRVKQKLKTLDSLVREWGFELPE--EIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIETPFE 83 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~~i~~E~~~h~~~~~~~g~~~~~--~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~~~~ 83 (499)
+++.++-++++.-......+.+|+.+|.++++.+|++..+ ..+++|++++|++|+..++ .|+|
T Consensus 369 g~ks~~i~~ie~~~~iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry~~d~~~~g~~-------------- 434 (523)
T KOG2598|consen 369 GSKSPTIEDIEKEAVIVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRYINDTGRRGNW-------------- 434 (523)
T ss_pred cccCCcHHHHHHHhHHHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHHhhhhhcccCh--------------
Confidence 6788899989888888899999999999999999999886 4555999999999999999 5777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010855 84 KIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKKL 163 (499)
Q Consensus 84 ~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~ 163 (499)
..+..|+.| |.++..++++..... +.++|.+|.++|++.++...++..++.++...+.+++++.+.+..+
T Consensus 435 -----~~l~~a~~p----y~~~l~~lk~~~~as-~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~pe~~~~l~~i 504 (523)
T KOG2598|consen 435 -----QELVIALNP----YVFALDKLKDEITAS-EGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSPEKLQTLVTI 504 (523)
T ss_pred -----hhhhhhhch----hhHHHHHHHhhcccC-CCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 468999999 888888888754433 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC
Q 010855 164 YYKAIKLHVNFFAAQPV 180 (499)
Q Consensus 164 F~~a~~lE~~Fw~~a~~ 180 (499)
|.++|.+|..||+.++.
T Consensus 505 ~~~~~~~Et~fw~t~~~ 521 (523)
T KOG2598|consen 505 FARVTEFETLFWTTALE 521 (523)
T ss_pred HHHHHHHHHhhcccccc
Confidence 99999999999999864
No 29
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=99.45 E-value=4.2e-12 Score=136.20 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=94.6
Q ss_pred hhccCCCHHHHHHHhh----c---CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHc-CCCCceEEEeece
Q 010855 304 GVLKGLNLEDIKWASQ----H---LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFAS-GDLNAFRVHSNEL 375 (499)
Q Consensus 304 ~~f~Gi~~~~l~~~~~----~---i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~-~gl~~~~I~aN~l 375 (499)
..|+|++.+++.+.++ + -.+++...+.+ +++| . .+|||++. ..+++++++. .| .+.|+|+++
T Consensus 85 ~~f~G~~~~el~~~~r~~l~~f~~~~l~~~a~~~~---~~~g---~-~vvVSASp-~~~Vepfa~~~LG--id~VIgTeL 154 (497)
T PLN02177 85 IAFAGLKIRDIELVSRSVLPKFYAEDVHPETWRVF---NSFG---K-RYIITASP-RIMVEPFVKTFLG--ADKVLGTEL 154 (497)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HhCC---C-EEEEECCc-HHHHHHHHHHcCC--CCEEEeccc
Confidence 4689999999987763 2 23667655544 4566 3 49999986 6689998876 45 367999999
Q ss_pred Ee-eCCeeecccccc-CCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC
Q 010855 376 VY-EESISTGEIVNK-LESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 376 ~~-~~g~~tG~~~~~-~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
+. .+|.+||.+.++ +|.|..|.+++++.... + ...++||||.+|++||..|+.++++..+
T Consensus 155 ev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g~---~--~~~~aYgDS~sD~plL~~a~e~y~V~~~ 216 (497)
T PLN02177 155 EVSKSGRATGFMKKPGVLVGDHKRDAVLKEFGD---A--LPDLGLGDRETDHDFMSICKEGYMVPRT 216 (497)
T ss_pred EECcCCEEeeeecCCCCCccHHHHHHHHHHhCC---C--CceEEEECCccHHHHHHhCCccEEeCCC
Confidence 99 589999999987 57899999999865531 1 1238999999999999999999888773
No 30
>PRK08238 hypothetical protein; Validated
Probab=99.24 E-value=1.4e-10 Score=124.37 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=93.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
.++++||+.++++.++++| .++.|+|++. ..+++.++++.|+ ...++|.+.. .++.+..|...
T Consensus 70 ~lp~~pga~e~L~~lk~~G---~~v~LaTas~-~~~a~~i~~~lGl-Fd~Vigsd~~------------~~~kg~~K~~~ 132 (479)
T PRK08238 70 TLPYNEEVLDYLRAERAAG---RKLVLATASD-ERLAQAVAAHLGL-FDGVFASDGT------------TNLKGAAKAAA 132 (479)
T ss_pred hCCCChhHHHHHHHHHHCC---CEEEEEeCCC-HHHHHHHHHHcCC-CCEEEeCCCc------------cccCCchHHHH
Confidence 4579999999999999999 9999999985 7789999888775 3556665321 13445568877
Q ss_pred HHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHhhhhhhCCcccccc
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~~~~~~gi~~~p~~ 458 (499)
+.+.... ...+|+|||.+|+++++.|+.++++++++.|++.+++.||+..-+.
T Consensus 133 l~~~l~~------~~~~yvGDS~~Dlp~~~~A~~av~Vn~~~~l~~~a~~~~~~~~~~~ 185 (479)
T PRK08238 133 LVEAFGE------RGFDYAGNSAADLPVWAAARRAIVVGASPGVARAARALGPVERVFP 185 (479)
T ss_pred HHHHhCc------cCeeEecCCHHHHHHHHhCCCeEEECCCHHHHHHHHHcCCcceecC
Confidence 7765531 3468999999999999999999999999999999999999877553
No 31
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.07 E-value=1.7e-08 Score=97.41 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=71.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++++.++++| +++.|+|++. ...++.+++.+++.. ..+++ +. ......-|.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~-----------~~---~~~~~kp~~ 152 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAG---YPLAVVTNKP-TPFVAPLLEALGIADYFSVVIG-----------GD---SLPNKKPDP 152 (226)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCccCccEEEc-----------CC---CCCCCCcCh
Confidence 4679999999999999999 9999999996 678889998877632 11111 10 001111234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIG 438 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~ 438 (499)
..++.++...+.. ..++++|||+.+|+.+++.+|+ .|.+.
T Consensus 153 ~~~~~~~~~~~~~-~~~~i~igD~~~Di~~a~~~g~~~i~v~ 193 (226)
T PRK13222 153 APLLLACEKLGLD-PEEMLFVGDSRNDIQAARAAGCPSVGVT 193 (226)
T ss_pred HHHHHHHHHcCCC-hhheEEECCCHHHHHHHHHCCCcEEEEC
Confidence 5566666665553 5789999999999999999997 45543
No 32
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.04 E-value=1.7e-08 Score=96.55 Aligned_cols=98 Identities=12% Similarity=0.005 Sum_probs=71.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++++.++++| +++.|+|++- ...++.+++..|+.. ..+++.+ ....+.-+.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~~--------------~~~~~Kp~p 144 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKG---LRLGLVTNKP-TPLARPLLELLGLAKYFSVLIGGD--------------SLAQRKPHP 144 (213)
T ss_pred cCccCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCcHhhCcEEEecC--------------CCCCCCCCh
Confidence 4789999999999999999 9999999984 678899998877532 1222211 001112234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEE
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIV 436 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv 436 (499)
..+...++..+.. +.+++|||||.+|+.++..|++.++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~igDs~~d~~aa~~aG~~~i 182 (213)
T TIGR01449 145 DPLLLAAERLGVA-PQQMVYVGDSRVDIQAARAAGCPSV 182 (213)
T ss_pred HHHHHHHHHcCCC-hhHeEEeCCCHHHHHHHHHCCCeEE
Confidence 5666666666553 5779999999999999999998443
No 33
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.98 E-value=2.4e-09 Score=93.35 Aligned_cols=111 Identities=10% Similarity=-0.038 Sum_probs=73.9
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEeeceEeeC-Ceeeccc-cccCCCh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSNELVYEE-SISTGEI-VNKLESP 393 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN~l~~~~-g~~tG~~-~~~~~~g 393 (499)
.....+++|+.++++.++++| .+++|+|+++ ...++.+++..++. ...+++....... +...+.. ......+
T Consensus 20 ~~~~~~~~~~~~~l~~l~~~g---~~i~ivS~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (139)
T cd01427 20 IEELELYPGVKEALKELKEKG---IKLALATNKS-RREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIG 95 (139)
T ss_pred cccCCcCcCHHHHHHHHHHCC---CeEEEEeCch-HHHHHHHHHHcCCchhhhheeccchhhhhcccccccccccccccC
Confidence 445788999999999999999 9999999997 77899999887752 2345544332211 1011111 1122333
Q ss_pred hhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 394 LEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 394 ~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
..|...++.+....+.. ...+++|||+.+|+.++..++.
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~igD~~~d~~~~~~~g~ 134 (139)
T cd01427 96 KPNPDKLLAALKLLGVD-PEEVLMVGDSLNDIEMAKAAGG 134 (139)
T ss_pred CCCHHHHHHHHHHcCCC-hhhEEEeCCCHHHHHHHHHcCC
Confidence 44555555555554432 4678999999999999999764
No 34
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=98.97 E-value=1.7e-08 Score=97.53 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=73.5
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
....+.||+.++++.++++| +++.|+|++- ...++.+++..++.. ..+++.+ .. ..+.-+
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g---~~~~i~S~~~-~~~~~~~l~~~~l~~~f~~~~~~~-----~~---------~~~Kp~ 150 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQG---LKIGLASASP-LHMLEAVLTMFDLRDYFDALASAE-----KL---------PYSKPH 150 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCC---CeEEEEeCCc-HHHHHHHHHhCcchhcccEEEEcc-----cC---------CCCCCC
Confidence 45789999999999999999 9999999984 678888988877532 1222211 01 112234
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG 438 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~ 438 (499)
...++..+...+.. +.++++||||.+|+.+++.||+..+..
T Consensus 151 ~~~~~~~~~~~~~~-~~~~~~igDs~~Di~aA~~aG~~~i~v 191 (222)
T PRK10826 151 PEVYLNCAAKLGVD-PLTCVALEDSFNGMIAAKAARMRSIVV 191 (222)
T ss_pred HHHHHHHHHHcCCC-HHHeEEEcCChhhHHHHHHcCCEEEEe
Confidence 45677777776663 578999999999999999999854433
No 35
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.95 E-value=7.9e-08 Score=91.10 Aligned_cols=103 Identities=12% Similarity=0.029 Sum_probs=73.5
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEeeceEeeCCeeeccccccCCChhh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
...+.+.||+.++++.++++| +++.|+|.+. ...++..++..|+. ...|++.+- .|. ..-
T Consensus 88 ~~~~~~~~~~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~gl~~~fd~i~~s~~-------~~~-------~KP 149 (198)
T TIGR01428 88 YLRLPPHPDVPAGLRALKERG---YRLAILSNGS-PAMLKSLVKHAGLDDPFDAVLSADA-------VRA-------YKP 149 (198)
T ss_pred HhcCCCCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHCCChhhhheeEehhh-------cCC-------CCC
Confidence 346789999999999999999 9999999985 77888889887763 223433211 010 011
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcC
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~ 439 (499)
+...++..+...+.. +.++++|||+.+|+.++..+|+ .|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~-p~~~~~vgD~~~Di~~A~~~G~~~i~v~r 193 (198)
T TIGR01428 150 APQVYQLALEALGVP-PDEVLFVASNPWDLGGAKKFGFKTAWVNR 193 (198)
T ss_pred CHHHHHHHHHHhCCC-hhhEEEEeCCHHHHHHHHHCCCcEEEecC
Confidence 244556666555553 5789999999999999999998 455544
No 36
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.94 E-value=2.8e-08 Score=95.45 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=70.8
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
+.+.+.||+.+++++++++| +++.|+|++. ...++..|+..|+.. ..|++-+ -. ..+.-|
T Consensus 79 ~~~~~~~g~~~~l~~L~~~g---~~~~i~S~~~-~~~~~~~l~~~gl~~~f~~i~~~~-----------~~---~~~Kp~ 140 (214)
T PRK13288 79 ELVTEYETVYETLKTLKKQG---YKLGIVTTKM-RDTVEMGLKLTGLDEFFDVVITLD-----------DV---EHAKPD 140 (214)
T ss_pred hhcccCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhceeEEEecC-----------cC---CCCCCC
Confidence 34678999999999999999 9999999996 678888998877642 2232211 00 011224
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
...+++.+...+.. ..+++|||||.+|+.+++.|++.
T Consensus 141 p~~~~~~~~~~~~~-~~~~~~iGDs~~Di~aa~~aG~~ 177 (214)
T PRK13288 141 PEPVLKALELLGAK-PEEALMVGDNHHDILAGKNAGTK 177 (214)
T ss_pred cHHHHHHHHHcCCC-HHHEEEECCCHHHHHHHHHCCCe
Confidence 45666666655543 57899999999999999999974
No 37
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=98.93 E-value=2.8e-08 Score=95.68 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=71.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC----ceEEEeeceEeeCCeeeccccccCCChhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN----AFRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~----~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
...+.||+.++++.++++| +++.|+|++. ...++..|+..++. ...++|.. .. ..+.-
T Consensus 85 ~~~l~~G~~~~L~~L~~~g---~~~~ivT~~~-~~~~~~~l~~~~l~~~~~f~~i~~~~-----~~---------~~~KP 146 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSG---IKVALTTGFD-RDTAERLLEKLGWTVGDDVDAVVCPS-----DV---------AAGRP 146 (220)
T ss_pred CCccCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHHhhhhhhccCCEEEcCC-----cC---------CCCCC
Confidence 4689999999999999999 9999999885 77889999887754 12333321 11 01112
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccE
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGI 435 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigi 435 (499)
+...+...+...+...+.+++||||+.+|+.+++.||+.+
T Consensus 147 ~p~~~~~a~~~~~~~~~~~~~~igD~~~Di~aa~~aG~~~ 186 (220)
T TIGR03351 147 APDLILRAMELTGVQDVQSVAVAGDTPNDLEAGINAGAGA 186 (220)
T ss_pred CHHHHHHHHHHcCCCChhHeEEeCCCHHHHHHHHHCCCCe
Confidence 4456666666655422368999999999999999999865
No 38
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.92 E-value=2.8e-08 Score=98.87 Aligned_cols=96 Identities=14% Similarity=0.079 Sum_probs=69.6
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++++.++++| +++.|+|.+ +...++.+++.+|+.. ..|++.+ .. ..+.-+.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g---~~l~I~Tn~-~~~~~~~~l~~~gl~~~Fd~ii~~~-----d~---------~~~KP~P 168 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHE---IPIAVASTR-PRRYLERAIEAVGMEGFFSVVLAAE-----DV---------YRGKPDP 168 (260)
T ss_pred CcccCCCHHHHHHHHHHCC---CEEEEEeCc-CHHHHHHHHHHcCCHhhCcEEEecc-----cC---------CCCCCCH
Confidence 4678999999999999999 999999998 5778899998887632 2333321 00 0111233
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
..+...+...+.. ..+++|||||.+|+.+++.|++.
T Consensus 169 e~~~~a~~~l~~~-p~~~l~IgDs~~Di~aA~~aG~~ 204 (260)
T PLN03243 169 EMFMYAAERLGFI-PERCIVFGNSNSSVEAAHDGCMK 204 (260)
T ss_pred HHHHHHHHHhCCC-hHHeEEEcCCHHHHHHHHHcCCE
Confidence 4555555555543 47899999999999999999984
No 39
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=98.90 E-value=7.5e-09 Score=98.50 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=69.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhh--H
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEK--L 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K--~ 397 (499)
..++|||+.++++.|++.| +++.|+|+. +......+++..|+....|+++.. ..+..| .
T Consensus 125 ~d~~~~~~~~~l~~L~~~G---i~~~i~TGD-~~~~a~~~~~~lgi~~~~v~a~~~---------------~kP~~k~~~ 185 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAG---IKVAILTGD-NESTASAIAKQLGIFDSIVFARVI---------------GKPEPKIFL 185 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTT---EEEEEEESS-EHHHHHHHHHHTTSCSEEEEESHE---------------TTTHHHHHH
T ss_pred cCcchhhhhhhhhhhhccC---cceeeeecc-cccccccccccccccccccccccc---------------ccccchhHH
Confidence 4589999999999999999 999999976 366788888888874444555432 245678 6
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
++++++... +..+++||||.||++|++.||
T Consensus 186 ~~i~~l~~~-----~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 186 RIIKELQVK-----PGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp HHHHHHTCT-----GGGEEEEESSGGHHHHHHHSS
T ss_pred HHHHHHhcC-----CCEEEEEccCHHHHHHHHhCc
Confidence 666665421 358999999999999999997
No 40
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.89 E-value=3.4e-08 Score=94.21 Aligned_cols=99 Identities=15% Similarity=0.102 Sum_probs=72.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
..+.+.||+.+++++++++| +++.|+|.+- ...++..++..|+.. ..+++.+ . ...+.-|
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g---~~~~i~Sn~~-~~~~~~~l~~~~l~~~f~~i~~~~----------~----~~~~KP~ 133 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADG---VGTAIATGKS-GPRARSLLEALGLLPLFDHVIGSD----------E----VPRPKPA 133 (205)
T ss_pred cccccCCCHHHHHHHHHHCC---CeEEEEeCCc-hHHHHHHHHHcCChhheeeEEecC----------c----CCCCCCC
Confidence 46889999999999999999 9999999984 678888888877632 2222211 0 0111224
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEE
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIV 436 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv 436 (499)
...+.+.++..+.+ +.+++||||+.+|+.+++.+++.++
T Consensus 134 ~~~~~~~~~~~~~~-~~~~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 134 PDIVREALRLLDVP-PEDAVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred hHHHHHHHHHcCCC-hhheEEEcCCHHHHHHHHHcCCeEE
Confidence 56677777666553 5789999999999999999998433
No 41
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.86 E-value=6.2e-08 Score=94.34 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=69.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc-e-EEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA-F-RVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~-~-~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++++.|+++| +++.|+|.+ +..++...++.+++.. + .|++.+ . .+ .+.-+.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g---~~l~i~Tn~-~~~~~~~~l~~~~l~~~f~~i~~~~-----~--~~-------~~KP~p 154 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAG---CVWGIVTNK-PEYLARLILPQLGWEQRCAVLIGGD-----T--LA-------ERKPHP 154 (229)
T ss_pred cCeeCCCHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCchhcccEEEecC-----c--CC-------CCCCCH
Confidence 5789999999999999999 999999988 4677888888777532 1 122211 0 01 111234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccE
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGI 435 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigi 435 (499)
..+...+...+.+ +.++++|||+.+|+.+++.||+..
T Consensus 155 ~~~~~~~~~l~~~-p~~~l~IGDs~~Di~aA~~aG~~~ 191 (229)
T PRK13226 155 LPLLVAAERIGVA-PTDCVYVGDDERDILAARAAGMPS 191 (229)
T ss_pred HHHHHHHHHhCCC-hhhEEEeCCCHHHHHHHHHCCCcE
Confidence 5556666555553 578999999999999999999743
No 42
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=98.86 E-value=1.1e-07 Score=95.14 Aligned_cols=95 Identities=11% Similarity=0.139 Sum_probs=68.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++++.++++| +++.|+|++ +...++.+++..++.. ..|++. .-. ....-+.
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g---~~l~ivTn~-~~~~~~~~l~~~~i~~~f~~i~~~-----------d~~---~~~Kp~p 160 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQG---VEMALITNK-PERFVAPLLDQMKIGRYFRWIIGG-----------DTL---PQKKPDP 160 (272)
T ss_pred CCccCCCHHHHHHHHHHCC---CeEEEEECC-cHHHHHHHHHHcCcHhhCeEEEec-----------CCC---CCCCCCc
Confidence 4678999999999999999 999999987 4668888888776532 112221 100 1112234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
..++.++...+.+ ..++++|||+.+|+.++..+++
T Consensus 161 ~~~~~~~~~~g~~-~~~~l~IGD~~~Di~aA~~aGi 195 (272)
T PRK13223 161 AALLFVMKMAGVP-PSQSLFVGDSRSDVLAAKAAGV 195 (272)
T ss_pred HHHHHHHHHhCCC-hhHEEEECCCHHHHHHHHHCCC
Confidence 5566666665553 5789999999999999999997
No 43
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.82 E-value=2.3e-07 Score=89.28 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=71.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.||+.++++.++++| +++.|+|.+. ...+...++..|+.. ..|++.+ + .| .+.-+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g---~~~~i~Tn~~-~~~~~~~l~~~~l~~~f~~i~~~~----~---~~-------~~KP~~ 153 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESG---YRLGIITDGL-PVKQWEKLERLGVRDFFDAVITSE----E---EG-------VEKPHP 153 (221)
T ss_pred hCCCCCCHHHHHHHHHHCC---CEEEEEeCCc-hHHHHHHHHhCChHHhccEEEEec----c---CC-------CCCCCH
Confidence 5789999999999999999 9999999985 567777888877632 2233221 0 01 011233
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
+.++..+...+.+ +.++++||||. +|+.+++.+++ .|.+..
T Consensus 154 ~~~~~~~~~~~~~-~~~~~~igDs~~~di~~A~~aG~~~i~~~~ 196 (221)
T TIGR02253 154 KIFYAALKRLGVK-PEEAVMVGDRLDKDIKGAKNLGMKTVWINQ 196 (221)
T ss_pred HHHHHHHHHcCCC-hhhEEEECCChHHHHHHHHHCCCEEEEECC
Confidence 4556666655553 47899999998 99999999997 455544
No 44
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=98.82 E-value=1.2e-07 Score=94.97 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=70.2
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc-eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA-FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
..+.+.||+.++++.++++| +++.|+|.+. ...+...++.+|+.. +.. +.++... ..|.
T Consensus 139 ~~~~l~pg~~e~L~~L~~~g---i~laIvSn~~-~~~~~~~L~~~gl~~~F~~----------vi~~~~~------~~k~ 198 (273)
T PRK13225 139 PALQLFPGVADLLAQLRSRS---LCLGILSSNS-RQNIEAFLQRQGLRSLFSV----------VQAGTPI------LSKR 198 (273)
T ss_pred ccCCcCCCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCChhheEE----------EEecCCC------CCCH
Confidence 35788999999999999999 9999999995 789999999887632 111 1111110 1245
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
..+..++...+.. +.+++|||||.+|+.+++.|++
T Consensus 199 ~~~~~~l~~~~~~-p~~~l~IGDs~~Di~aA~~AG~ 233 (273)
T PRK13225 199 RALSQLVAREGWQ-PAAVMYVGDETRDVEAARQVGL 233 (273)
T ss_pred HHHHHHHHHhCcC-hhHEEEECCCHHHHHHHHHCCC
Confidence 6666666655543 4689999999999999999997
No 45
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=98.79 E-value=1.6e-07 Score=87.64 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=65.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.||+.++++.++++| +++.|+|.+ ..++..++..|+.. ..+++.. .. + ....+.
T Consensus 86 ~~~~~~g~~~~l~~l~~~g---~~i~i~S~~---~~~~~~l~~~~l~~~f~~v~~~~----------~~-~---~~kp~~ 145 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKG---IAVGLGSSS---KNADRILAKLGLTDYFDAIVDAD----------EV-K---EGKPHP 145 (185)
T ss_pred CCCCCcCHHHHHHHHHHcC---CeEEEEeCc---hhHHHHHHHcChHHHCCEeeehh----------hC-C---CCCCCh
Confidence 4789999999999999999 999999987 45788888777531 2233211 00 0 011123
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccE
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGI 435 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigi 435 (499)
..+...++..+.. +.++++|||+.+|+.+++.+++..
T Consensus 146 ~~~~~~~~~~~~~-~~~~v~IgD~~~di~aA~~~G~~~ 182 (185)
T TIGR02009 146 ETFLLAAELLGVS-PNECVVFEDALAGVQAARAAGMFA 182 (185)
T ss_pred HHHHHHHHHcCCC-HHHeEEEeCcHhhHHHHHHCCCeE
Confidence 3445555554443 578999999999999999999743
No 46
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.78 E-value=9.8e-08 Score=99.18 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=71.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++|+.|+++| +++.|+|.+- ...++..++..|+.. ..|++-+- + ..+.-+.
T Consensus 214 ~~~l~pGa~ElL~~Lk~~G---iklaIaSn~~-~~~~~~~L~~lgL~~yFd~Iv~sdd-----v---------~~~KP~P 275 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYK---IPMALVSTRP-RKTLENAIGSIGIRGFFSVIVAAED-----V---------YRGKPDP 275 (381)
T ss_pred CCCcCcCHHHHHHHHHHCC---CeEEEEeCCC-HHHHHHHHHHcCCHHHceEEEecCc-----C---------CCCCCCH
Confidence 4678999999999999999 9999999884 778999999887642 23333210 0 0111234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc-EEEc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG-IVIG 438 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig-iv~~ 438 (499)
..+.......+. .+.++++||||.+|+.+++.|++. |.+.
T Consensus 276 eifl~A~~~lgl-~Peecl~IGDS~~DIeAAk~AGm~~IgV~ 316 (381)
T PLN02575 276 EMFIYAAQLLNF-IPERCIVFGNSNQTVEAAHDARMKCVAVA 316 (381)
T ss_pred HHHHHHHHHcCC-CcccEEEEcCCHHHHHHHHHcCCEEEEEC
Confidence 455555555554 357899999999999999999984 3443
No 47
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=98.77 E-value=2.9e-07 Score=90.81 Aligned_cols=98 Identities=6% Similarity=-0.093 Sum_probs=68.2
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc---eEEEeeceEeeCCeeeccccccCCChhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA---FRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~---~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
+...+.||+.++|+.|+++| +++.|+|++ +...++.+|+..|+.. ..|++.+ .. ..+.-
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g---~~l~IvT~~-~~~~~~~~l~~~gl~~~f~d~ii~~~-----~~---------~~~KP 157 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARG---IKIGSTTGY-TREMMDVVAPEAALQGYRPDYNVTTD-----DV---------PAGRP 157 (253)
T ss_pred hcCccCCCHHHHHHHHHHCC---CeEEEECCC-cHHHHHHHHHHHHhcCCCCceEEccc-----cC---------CCCCC
Confidence 35789999999999999999 999999988 4778888888766532 1222211 00 01111
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
+...+...+...+...+.+++|||||.+|+.+++.|++.
T Consensus 158 ~p~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~ 196 (253)
T TIGR01422 158 APWMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMW 196 (253)
T ss_pred CHHHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCe
Confidence 234445555555432246799999999999999999973
No 48
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.77 E-value=7.8e-08 Score=87.77 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=72.7
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
....+.||+.++++.++++| ++++|+|.+ +...++..++.+|+. ...|++.. . ......+
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~---~~~~i~Sn~-~~~~~~~~l~~~~~~~~f~~i~~~~----------~----~~~~Kp~ 135 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKG---IPLVIVSNG-SRERIERVLERLGLDDYFDEIISSD----------D----VGSRKPD 135 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTT---SEEEEEESS-EHHHHHHHHHHTTHGGGCSEEEEGG----------G----SSSSTTS
T ss_pred hccchhhhhhhhhhhccccc---ceeEEeecC-Ccccccccccccccccccccccccc----------h----hhhhhhH
Confidence 57899999999999999899 999999988 578899999988764 22343321 0 0111223
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
...++.+++..+.. +.++++|||+..|+.+++.+|+.
T Consensus 136 ~~~~~~~~~~~~~~-p~~~~~vgD~~~d~~~A~~~G~~ 172 (176)
T PF13419_consen 136 PDAYRRALEKLGIP-PEEILFVGDSPSDVEAAKEAGIK 172 (176)
T ss_dssp HHHHHHHHHHHTSS-GGGEEEEESSHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCC-cceEEEEeCCHHHHHHHHHcCCe
Confidence 45667777665553 57899999999999999999973
No 49
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=98.74 E-value=4.9e-07 Score=90.07 Aligned_cols=97 Identities=5% Similarity=-0.099 Sum_probs=67.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc---eEEEeeceEeeCCeeeccccccCCChhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA---FRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~---~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
+.+.+.||+.++|+.|+++| +++.|+|++. ...++.+++..++.. ..|++.+ . ...+.-
T Consensus 98 ~~~~~~pg~~elL~~L~~~g---~~l~I~T~~~-~~~~~~~l~~~~l~~~~~d~i~~~~-----~---------~~~~KP 159 (267)
T PRK13478 98 DYATPIPGVLEVIAALRARG---IKIGSTTGYT-REMMDVVVPLAAAQGYRPDHVVTTD-----D---------VPAGRP 159 (267)
T ss_pred hcCCCCCCHHHHHHHHHHCC---CEEEEEcCCc-HHHHHHHHHHHhhcCCCceEEEcCC-----c---------CCCCCC
Confidence 35788999999999999999 9999999885 677888887654321 1222211 0 001112
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
+...+...+...+.....+++|||||.+|+.+++.|++
T Consensus 160 ~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~ 197 (267)
T PRK13478 160 YPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGM 197 (267)
T ss_pred ChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCC
Confidence 34455666665554323679999999999999999997
No 50
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.74 E-value=4.9e-07 Score=87.86 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=71.4
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
...+.+.||+.++++.++++| +++.|+|.+ +...++..++..|+.. ..|++.+- +. .+.-
T Consensus 89 ~~~~~~~~g~~e~L~~Lk~~g---~~~~i~Tn~-~~~~~~~~l~~~~l~~~fd~iv~s~~----------~~----~~KP 150 (224)
T PRK14988 89 GPRAVLREDTVPFLEALKASG---KRRILLTNA-HPHNLAVKLEHTGLDAHLDLLLSTHT----------FG----YPKE 150 (224)
T ss_pred hccCCcCCCHHHHHHHHHhCC---CeEEEEeCc-CHHHHHHHHHHCCcHHHCCEEEEeee----------CC----CCCC
Confidence 456889999999999999999 999999988 4778888888777532 23444321 00 0111
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
+...+....+..+. .+.+++|||||..|+.+++.||+.
T Consensus 151 ~p~~~~~~~~~~~~-~p~~~l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 151 DQRLWQAVAEHTGL-KAERTLFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred CHHHHHHHHHHcCC-ChHHEEEEcCCHHHHHHHHHcCCe
Confidence 34555665555555 357899999999999999999985
No 51
>PRK11587 putative phosphatase; Provisional
Probab=98.73 E-value=1.7e-07 Score=90.51 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=67.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCce-EEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAF-RVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~-~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
..+.+.||+.++++.|+++| +++.|+|.+- ...+...+...++... .|++.+ .+. ...-+.
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g---~~~~ivTn~~-~~~~~~~l~~~~l~~~~~i~~~~----------~~~----~~KP~p 141 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLG---IPWAIVTSGS-VPVASARHKAAGLPAPEVFVTAE----------RVK----RGKPEP 141 (218)
T ss_pred cCceeCcCHHHHHHHHHHcC---CcEEEEcCCC-chHHHHHHHhcCCCCccEEEEHH----------Hhc----CCCCCc
Confidence 46789999999999999999 9999999984 4566667766665321 222211 000 001122
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc-EEEc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG-IVIG 438 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig-iv~~ 438 (499)
..+.......+.. +.+++|||||.+|+.+++.|++. |.+.
T Consensus 142 ~~~~~~~~~~g~~-p~~~l~igDs~~di~aA~~aG~~~i~v~ 182 (218)
T PRK11587 142 DAYLLGAQLLGLA-PQECVVVEDAPAGVLSGLAAGCHVIAVN 182 (218)
T ss_pred HHHHHHHHHcCCC-cccEEEEecchhhhHHHHHCCCEEEEEC
Confidence 3444444444442 57899999999999999999984 4443
No 52
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.73 E-value=2.1e-07 Score=91.87 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=70.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.||+.++++.++++| +++.|+|.+. ...++..++..|+.. ..|++.+- . ..+.-+.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g---~~l~I~Tn~~-~~~~~~~l~~~gl~~~Fd~iv~~~~-----~---------~~~KP~p 167 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRG---LKRAAVTNAP-RENAELMISLLGLSDFFQAVIIGSE-----C---------EHAKPHP 167 (248)
T ss_pred cCCcCccHHHHHHHHHHcC---CeEEEEeCCC-HHHHHHHHHHcCChhhCcEEEecCc-----C---------CCCCCCh
Confidence 5789999999999999999 9999999985 778999999887642 23333221 0 0111123
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEE
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIV 436 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv 436 (499)
..+...+...+.+ +.+++||||+..|+.+++.|++.++
T Consensus 168 ~~~~~a~~~~~~~-~~~~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 168 DPYLKALEVLKVS-KDHTFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred HHHHHHHHHhCCC-hhHEEEEcCCHHHHHHHHHCCCEEE
Confidence 4445555544442 5789999999999999999997433
No 53
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=98.70 E-value=3.6e-07 Score=85.24 Aligned_cols=94 Identities=9% Similarity=0.020 Sum_probs=64.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++|+.++++| +++.|+|.+.. ....++..++.. ..+++.. . ...+.-+.
T Consensus 85 ~~~~~pg~~~~L~~L~~~g---~~~~i~s~~~~---~~~~l~~~~l~~~f~~~~~~~----------~----~~~~kp~p 144 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNN---IKIALASASKN---APTVLEKLGLIDYFDAIVDPA----------E----IKKGKPDP 144 (185)
T ss_pred CcccCccHHHHHHHHHHCC---CeEEEEeCCcc---HHHHHHhcCcHhhCcEEEehh----------h----cCCCCCCh
Confidence 3578899999999999999 99999998753 345677766531 2222211 0 00111244
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
+.++..++..+.+ +.++++|||+.+|+.+++.+++.
T Consensus 145 ~~~~~~~~~~~~~-~~~~v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 145 EIFLAAAEGLGVS-PSECIGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred HHHHHHHHHcCCC-HHHeEEEecCHHHHHHHHHcCCE
Confidence 5555566555542 57899999999999999999973
No 54
>PRK09449 dUMP phosphatase; Provisional
Probab=98.69 E-value=2e-06 Score=83.01 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=69.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.||+.++++.|+ +| +++.|+|.+. ...++..++..|+.. ..|++.+ + .| ...-+.
T Consensus 93 ~~~~~~g~~~~L~~L~-~~---~~~~i~Tn~~-~~~~~~~l~~~~l~~~fd~v~~~~----~---~~-------~~KP~p 153 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GK---VKMGIITNGF-TELQQVRLERTGLRDYFDLLVISE----Q---VG-------VAKPDV 153 (224)
T ss_pred cCccCccHHHHHHHHH-hC---CeEEEEeCCc-HHHHHHHHHhCChHHHcCEEEEEC----c---cC-------CCCCCH
Confidence 4679999999999999 57 8999999986 678888888877632 2232211 0 00 111234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCcc-EEEc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADIG-IVIG 438 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adig-iv~~ 438 (499)
..+...+...+.....++++|||+. +|+.+++.||+. |.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~ 196 (224)
T PRK09449 154 AIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLN 196 (224)
T ss_pred HHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence 5566666655532235799999998 799999999984 4443
No 55
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=98.68 E-value=1.7e-06 Score=82.25 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=63.7
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
..+.||+.++++.++++| +++.|+|.+ .. .++..++..|+.. ..|++.. . .| .+.-+..
T Consensus 104 ~~~~~g~~~~l~~L~~~g---~~~~i~Sn~-~~-~~~~~l~~~~l~~~fd~i~~s~-----~--~~-------~~KP~~~ 164 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERG---LILGVISNF-DS-RLRGLLEALGLLEYFDFVVTSY-----E--VG-------AEKPDPK 164 (203)
T ss_pred ceeCcCHHHHHHHHHHCC---CEEEEEeCC-ch-hHHHHHHHCCcHHhcceEEeec-----c--cC-------CCCCCHH
Confidence 468899999999999999 999999976 33 4577788776531 2233211 0 01 0111234
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI 433 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi 433 (499)
.+...+...+.+ +.++++|||+. +|+.+++.+|+
T Consensus 165 ~~~~~~~~~~~~-~~~~~~IgD~~~~Di~~A~~aG~ 199 (203)
T TIGR02252 165 IFQEALERAGIS-PEEALHIGDSLRNDYQGARAAGW 199 (203)
T ss_pred HHHHHHHHcCCC-hhHEEEECCCchHHHHHHHHcCC
Confidence 556666655543 57899999997 89999999986
No 56
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=98.65 E-value=1.8e-06 Score=82.07 Aligned_cols=109 Identities=9% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcC-CCC--ceEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASG-DLN--AFRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~-gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
..+.||+.++++.++++| ++++|+|.+- ...+...+... ++. ...|++.. . ...+.-+.
T Consensus 83 ~~~~~g~~e~L~~l~~~g---~~~~i~Sn~~-~~~~~~~~~~~~~l~~~fd~v~~s~----------~----~~~~KP~p 144 (199)
T PRK09456 83 VALRPEVIAIMHKLREQG---HRVVVLSNTN-RLHTTFWPEEYPEVRAAADHIYLSQ----------D----LGMRKPEA 144 (199)
T ss_pred hccCHHHHHHHHHHHhCC---CcEEEEcCCc-hhhHHHHHhhchhHHHhcCEEEEec----------c----cCCCCCCH
Confidence 468999999999999999 9999999884 44444444332 221 11222211 0 01111244
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcCCchHHhhhh
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGSSSSLRRLGD 448 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~~~~L~~~~~ 448 (499)
..+...++..+.. +.+++||||+..|+.+++.+|+ .|.+.+...+.++.+
T Consensus 145 ~~~~~~~~~~~~~-p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~~~~~~l~ 195 (199)
T PRK09456 145 RIYQHVLQAEGFS-AADAVFFDDNADNIEAANALGITSILVTDKQTIPDYFA 195 (199)
T ss_pred HHHHHHHHHcCCC-hhHeEEeCCCHHHHHHHHHcCCEEEEecCCccHHHHHH
Confidence 5666666665553 5789999999999999999998 555655556665544
No 57
>PLN02940 riboflavin kinase
Probab=98.65 E-value=7.4e-07 Score=93.50 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=70.8
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHH-cCCCC--ceEEEeeceEeeCCeeeccccccCCChhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFA-SGDLN--AFRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~-~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
+++.+.||+.++++.|+++| +++.|+|.+. ...++..+. ..++. ...|+|.+- ...+.-
T Consensus 90 ~~~~l~pGv~elL~~Lk~~g---~~l~IvTn~~-~~~~~~~l~~~~gl~~~Fd~ii~~d~--------------v~~~KP 151 (382)
T PLN02940 90 CNIKALPGANRLIKHLKSHG---VPMALASNSP-RANIEAKISCHQGWKESFSVIVGGDE--------------VEKGKP 151 (382)
T ss_pred ccCCCCcCHHHHHHHHHHCC---CcEEEEeCCc-HHHHHHHHHhccChHhhCCEEEehhh--------------cCCCCC
Confidence 46788999999999999999 9999999985 667777776 45542 123333210 011112
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc-EEE
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG-IVI 437 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig-iv~ 437 (499)
+.+.+...++..+.. +.++++||||.+|+.+++.|++. |.+
T Consensus 152 ~p~~~~~a~~~lgv~-p~~~l~VGDs~~Di~aA~~aGi~~I~v 193 (382)
T PLN02940 152 SPDIFLEAAKRLNVE-PSNCLVIEDSLPGVMAGKAAGMEVIAV 193 (382)
T ss_pred CHHHHHHHHHHcCCC-hhHEEEEeCCHHHHHHHHHcCCEEEEE
Confidence 345666666666553 57899999999999999999984 444
No 58
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=98.60 E-value=2.4e-07 Score=83.98 Aligned_cols=91 Identities=9% Similarity=0.053 Sum_probs=63.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.....||+.++++.++++| +++.|+|.+. ...+...++.+ +. ...|++.. . .. +.-+.
T Consensus 62 ~~~~~~g~~e~l~~L~~~g---~~~~i~T~~~-~~~~~~~~~~~-l~~~f~~i~~~~-----~---------~~-~Kp~~ 121 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAG---IKLGIISNGS-LRAQKLLLRKH-LGDYFDLILGSD-----E---------FG-AKPEP 121 (154)
T ss_pred hheeccCHHHHHHHHHHCc---CeEEEEeCCc-hHHHHHHHHHH-HHhcCcEEEecC-----C---------CC-CCcCH
Confidence 4456699999999999999 9999999996 56777777663 21 11232211 1 01 12245
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
..+...+...+.+ + ++++|||+..|+.+++.|+
T Consensus 122 ~~~~~~~~~~~~~-~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 122 EIFLAALESLGLP-P-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred HHHHHHHHHcCCC-C-CEEEEeCCHHHHHHHHHcc
Confidence 6677777666653 4 8999999999999998875
No 59
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=98.60 E-value=1.4e-06 Score=84.40 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=68.1
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
..+-||..+.+..++++| +++.|+|.. +...+..+|+++|+.. ..+++ .++ . ... .-...
T Consensus 88 ~~~~~gv~e~L~~L~~~g---~~l~i~T~k-~~~~~~~~l~~~gl~~~F~~i~g----~~~-~----~~~-----KP~P~ 149 (220)
T COG0546 88 SRLFPGVKELLAALKSAG---YKLGIVTNK-PERELDILLKALGLADYFDVIVG----GDD-V----PPP-----KPDPE 149 (220)
T ss_pred CccCCCHHHHHHHHHhCC---CeEEEEeCC-cHHHHHHHHHHhCCccccceEEc----CCC-C----CCC-----CcCHH
Confidence 579999999999999999 999999987 4678999999888743 22333 110 0 000 01234
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
.+...+...+.+ +.++++||||..|+.|++.|++
T Consensus 150 ~l~~~~~~~~~~-~~~~l~VGDs~~Di~aA~~Ag~ 183 (220)
T COG0546 150 PLLLLLEKLGLD-PEEALMVGDSLNDILAAKAAGV 183 (220)
T ss_pred HHHHHHHHhCCC-hhheEEECCCHHHHHHHHHcCC
Confidence 455555555554 4589999999999999999995
No 60
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.58 E-value=2.6e-07 Score=102.62 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=80.0
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
-++|||..+.++.|++.| +++.++|+.- ....+.+.++.|+ .+++++ +++.+|.+.+
T Consensus 445 D~~Rp~a~eaI~~l~~~G---i~v~miTGD~-~~ta~~iA~~lGI--~~v~a~-----------------~~PedK~~~v 501 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMG---IKTIMITGDN-RLTAAAIAAEAGV--DDFIAE-----------------ATPEDKIALI 501 (675)
T ss_pred ccchhHHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCC--CEEEcC-----------------CCHHHHHHHH
Confidence 389999999999999999 9999999974 6678888888776 334442 5678999999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHh
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRR 445 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~ 445 (499)
+++.+. +..+.++|||.||.++|..||+||+++++..+++
T Consensus 502 ~~lq~~-----g~~VamvGDG~NDapAL~~AdvGiAm~~gt~~ak 541 (675)
T TIGR01497 502 RQEQAE-----GKLVAMTGDGTNDAPALAQADVGVAMNSGTQAAK 541 (675)
T ss_pred HHHHHc-----CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHHH
Confidence 998753 3467899999999999999999999997655543
No 61
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.57 E-value=3.1e-07 Score=102.19 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=78.3
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
-++|||.++.++.|++.| ++++++|+- +..-.+.+.++.|+ .+++| .+++.+|.+++
T Consensus 444 D~~R~~~~eai~~Lr~~G---I~vvMiTGD-n~~TA~aIA~elGI--d~v~A-----------------~~~PedK~~iV 500 (679)
T PRK01122 444 DIVKPGIKERFAELRKMG---IKTVMITGD-NPLTAAAIAAEAGV--DDFLA-----------------EATPEDKLALI 500 (679)
T ss_pred ccCchhHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCC--cEEEc-----------------cCCHHHHHHHH
Confidence 378999999999999999 999999986 46677777777776 33433 25678999999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
+++.+. +..|.++|||.||-++|+.||+||+|+.++..+
T Consensus 501 ~~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvA 539 (679)
T PRK01122 501 RQEQAE-----GRLVAMTGDGTNDAPALAQADVGVAMNSGTQAA 539 (679)
T ss_pred HHHHHc-----CCeEEEECCCcchHHHHHhCCEeEEeCCCCHHH
Confidence 998853 345679999999999999999999999765444
No 62
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=98.55 E-value=8.7e-06 Score=78.20 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=68.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.++++.++++ +++.|+|.++ ...++..++..++.. ..|++.. + .| ...-+.
T Consensus 95 ~~~~~~g~~~~L~~l~~~----~~~~i~Sn~~-~~~~~~~l~~~~l~~~fd~i~~~~----~---~~-------~~KP~~ 155 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK----FRLYIVTNGV-RETQYKRLRKSGLFPFFDDIFVSE----D---AG-------IQKPDK 155 (224)
T ss_pred cCeeCccHHHHHHHHHhc----CcEEEEeCCc-hHHHHHHHHHCCcHhhcCEEEEcC----c---cC-------CCCCCH
Confidence 468999999999999875 5899999997 678888888877632 2333211 0 00 011233
Q ss_pred HHHHHHHhhc-CCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEc
Q 010855 398 QAFNDILKDH-SNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIG 438 (499)
Q Consensus 398 ~~l~~~~~~~-~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~ 438 (499)
..+...+... +.. ..++++||||. +|+.+++.+|+ .|.+.
T Consensus 156 ~~~~~~~~~~~~~~-~~~~v~igD~~~~di~~A~~~G~~~i~~~ 198 (224)
T TIGR02254 156 EIFNYALERMPKFS-KEEVLMIGDSLTADIKGGQNAGLDTCWMN 198 (224)
T ss_pred HHHHHHHHHhcCCC-chheEEECCCcHHHHHHHHHCCCcEEEEC
Confidence 4555555544 442 46899999998 79999999997 44443
No 63
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=98.54 E-value=7.7e-07 Score=95.70 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=67.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+.||+.+++++++++| +++.|+|.+ +...++..++.+++.. ..|++-+ + . . +..|.
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g---~~l~IvS~~-~~~~~~~~l~~~~l~~~f~~i~~~d----~-v-----~-----~~~kP 388 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENN---CSIYIASNG-LTEYLRAIVSYYDLDQWVTETFSIE----Q-I-----N-----SLNKS 388 (459)
T ss_pred CCCcCCCHHHHHHHHHHCC---CeEEEEeCC-chHHHHHHHHHCCcHhhcceeEecC----C-C-----C-----CCCCc
Confidence 4688999999999999999 999999998 4789999998877632 2232211 0 0 0 01233
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
..+...+...+ ..++++||||.+|+.+++.|++.
T Consensus 389 ~~~~~al~~l~---~~~~v~VGDs~~Di~aAk~AG~~ 422 (459)
T PRK06698 389 DLVKSILNKYD---IKEAAVVGDRLSDINAAKDNGLI 422 (459)
T ss_pred HHHHHHHHhcC---cceEEEEeCCHHHHHHHHHCCCe
Confidence 45555554432 35799999999999999999974
No 64
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.53 E-value=4e-07 Score=101.26 Aligned_cols=96 Identities=14% Similarity=0.174 Sum_probs=78.0
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
-++|||.++.++.|++.| +++.++|+- ...-...+.++.|++ ++++ .+++.+|.+++
T Consensus 440 Dp~R~~a~e~I~~Lr~~G---I~vvMiTGD-n~~TA~aIA~elGI~--~v~A-----------------~~~PedK~~iV 496 (673)
T PRK14010 440 DVIKDGLVERFRELREMG---IETVMCTGD-NELTAATIAKEAGVD--RFVA-----------------ECKPEDKINVI 496 (673)
T ss_pred cCCcHHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCc--eEEc-----------------CCCHHHHHHHH
Confidence 489999999999999999 999999986 466677777777753 3433 25678999999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
+++.+. +..|.++|||.||-|+|+.||+||+|+.+...+
T Consensus 497 ~~lQ~~-----G~~VaMtGDGvNDAPALa~ADVGIAMgsGTdvA 535 (673)
T PRK14010 497 REEQAK-----GHIVAMTGDGTNDAPALAEANVGLAMNSGTMSA 535 (673)
T ss_pred HHHHhC-----CCEEEEECCChhhHHHHHhCCEEEEeCCCCHHH
Confidence 998753 345669999999999999999999999765443
No 65
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=98.52 E-value=3e-06 Score=89.94 Aligned_cols=119 Identities=13% Similarity=0.040 Sum_probs=88.2
Q ss_pred hhhccCCCHHHHHHHhhcC-------CCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 303 SGVLKGLNLEDIKWASQHL-------IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 303 ~~~f~Gi~~~~l~~~~~~i-------~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
.-.|+|++.+++++.++.+ -+++. .++..+..| .++|||++- ..++++.++.+ +..+.|+++++
T Consensus 70 ~v~f~Gl~~~die~vaRavlpkf~~~dv~~e---~~~~~~~~g----~~vVVTAsP-rvmVEpFake~-LG~D~VvGTEL 140 (498)
T PLN02499 70 FVATAGVHESEIESVARAVLPKFYMDDVDME---AWKVFSSCD----KRVVVTRMP-RVMVERFAKEH-LRADEVIGSEL 140 (498)
T ss_pred HHHhCCCCHHHHHHHHHHHhhHHHHhhCCHH---HHHHHHcCC----eEEEEeCCH-HHHHHHHHHHh-cCCceEEeeeE
Confidence 4689999999999887632 34444 555556555 789999985 66999999873 23467889999
Q ss_pred EeeC-CeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEE
Q 010855 376 VYEE-SISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVI 437 (499)
Q Consensus 376 ~~~~-g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~ 437 (499)
++.+ |.+||.+.+.+| +..|.+++++...+ ....+-+||+.+|-..+..+. ++.+
T Consensus 141 ~v~~~G~~TG~~~G~n~-~ek~~~rl~~~~g~-----~~~~vg~~~~~~~~~f~~~ck-~~~~ 196 (498)
T PLN02499 141 VVNRFGFATGFIRGTDV-DQSVANRVANLFVD-----ERPQLGLGRISASSSFLSLCK-EQIH 196 (498)
T ss_pred EEeeccEEEEEEecCcc-HHHHHHHHHHHhCc-----cCceecccCCcccchhhhhCc-eEEe
Confidence 9985 999999998766 44458888887642 134678999999998887776 4444
No 66
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=98.49 E-value=9.9e-06 Score=81.74 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=67.2
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
+.+.||+.++++.++++| +++.|+|.+ +...+..+++..+.. . +.+.+.+ .++.- ...+.-+...+
T Consensus 143 ~~l~pGv~elL~~L~~~g---~~l~IvTn~-~~~~~~~~l~~~~~~--~-~~~~~~~----v~~~~---~~~~KP~p~~~ 208 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAG---IKVAVCSTS-NEKAVSKIVNTLLGP--E-RAQGLDV----FAGDD---VPKKKPDPDIY 208 (286)
T ss_pred CCchhhHHHHHHHHHHCC---CeEEEEeCC-CHHHHHHHHHHhccc--c-ccCceEE----Eeccc---cCCCCCCHHHH
Confidence 689999999999999999 999999987 477787777654210 0 0111110 01110 00111234566
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEE
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVI 437 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~ 437 (499)
...+...+.+ +.++++||||.+|+.++..+|+.++.
T Consensus 209 ~~a~~~~~~~-p~~~l~IGDs~~Di~aA~~aG~~~i~ 244 (286)
T PLN02779 209 NLAAETLGVD-PSRCVVVEDSVIGLQAAKAAGMRCIV 244 (286)
T ss_pred HHHHHHhCcC-hHHEEEEeCCHHhHHHHHHcCCEEEE
Confidence 6666655553 47899999999999999999985443
No 67
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.48 E-value=2e-06 Score=84.21 Aligned_cols=90 Identities=14% Similarity=0.160 Sum_probs=58.5
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCC---hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC---GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s---~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
....+++.+|++.++++| +++.|||+... ...++.+++.+|++... ... ++|.-..+ .-.+|.
T Consensus 113 s~p~~~a~elL~~l~~~G---~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f----~~i-----~~~d~~~~--~Kp~~~ 178 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRG---DAIFFVTGRTPGKTDTVSKTLAKNFHIPAMN----PVI-----FAGDKPGQ--YQYTKT 178 (237)
T ss_pred CcchhHHHHHHHHHHHCC---CEEEEEeCCCCCcCHHHHHHHHHHhCCchhe----eEE-----ECCCCCCC--CCCCHH
Confidence 455666999999999999 99999998621 34788888888875311 111 22211111 001243
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
.++ ... ..++||||+.+|+.+++.|++
T Consensus 179 ~~l----~~~-----~i~i~vGDs~~DI~aAk~AGi 205 (237)
T TIGR01672 179 QWI----QDK-----NIRIHYGDSDNDITAAKEAGA 205 (237)
T ss_pred HHH----HhC-----CCeEEEeCCHHHHHHHHHCCC
Confidence 322 222 237899999999999999997
No 68
>PHA02597 30.2 hypothetical protein; Provisional
Probab=98.47 E-value=1.6e-06 Score=82.16 Aligned_cols=101 Identities=11% Similarity=0.049 Sum_probs=59.6
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
+...+.||+.++++.|++++ +.+++|.+- ...-...++..++.. .+-. .| +.+.++... ..|..
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~----~~~i~Tn~~-~~~~~~~~~~~~l~~--~f~~--~f-~~i~~~~~~------~~kp~ 134 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDY----DFVAVTALG-DSIDALLNRQFNLNA--LFPG--AF-SEVLMCGHD------ESKEK 134 (197)
T ss_pred HhccCCCCHHHHHHHHHhcC----CEEEEeCCc-cchhHHHHhhCCHHH--hCCC--cc-cEEEEeccC------cccHH
Confidence 45679999999999998765 567777652 222222334444321 0000 01 111111111 12556
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc--CccEEEc
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA--DIGIVIG 438 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A--digiv~~ 438 (499)
.+...+...+ ...++||||+.+|+.++..| |+.++..
T Consensus 135 ~~~~a~~~~~---~~~~v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 135 LFIKAKEKYG---DRVVCFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred HHHHHHHHhC---CCcEEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 6666666554 35688999999999999999 9854433
No 69
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=98.47 E-value=6.7e-06 Score=79.27 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=67.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc-e--EEEeeceEeeCCeeeccccccCCChhhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA-F--RVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~-~--~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
.+.+.||+.++++.+ + +++.|+|.+ ....+...|+..++.. + .|++-+ .+ ....-+
T Consensus 86 ~~~~~~gv~~~L~~L---~---~~~~ivTn~-~~~~~~~~l~~~~l~~~F~~~v~~~~----------~~----~~~KP~ 144 (221)
T PRK10563 86 ELEPIAGANALLESI---T---VPMCVVSNG-PVSKMQHSLGKTGMLHYFPDKLFSGY----------DI----QRWKPD 144 (221)
T ss_pred cCCcCCCHHHHHHHc---C---CCEEEEeCC-cHHHHHHHHHhcChHHhCcceEeeHH----------hc----CCCCCC
Confidence 578899999999998 4 799999988 4678898998877632 1 122211 00 011123
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEE
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVI 437 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~ 437 (499)
...+...+...+.. +..+++|||+.+|+.+++.||+.++.
T Consensus 145 p~~~~~a~~~~~~~-p~~~l~igDs~~di~aA~~aG~~~i~ 184 (221)
T PRK10563 145 PALMFHAAEAMNVN-VENCILVDDSSAGAQSGIAAGMEVFY 184 (221)
T ss_pred hHHHHHHHHHcCCC-HHHeEEEeCcHhhHHHHHHCCCEEEE
Confidence 45666666666553 57899999999999999999986553
No 70
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.46 E-value=6e-07 Score=100.19 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=79.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
.-.+||+..+.++.|++.| ++++++|+- +..-.+.+.++.|+ .+++++ ..+.+|.+.
T Consensus 535 ~D~~R~~a~~aI~~L~~~G---i~~~mLTGD-n~~~A~~iA~~lGI--d~v~Ae-----------------llPedK~~~ 591 (713)
T COG2217 535 ADELRPDAKEAIAALKALG---IKVVMLTGD-NRRTAEAIAKELGI--DEVRAE-----------------LLPEDKAEI 591 (713)
T ss_pred eCCCChhHHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCh--Hhhecc-----------------CCcHHHHHH
Confidence 3489999999999999999 999999986 56678888888775 455553 345799999
Q ss_pred HHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCch
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSS 442 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~ 442 (499)
++++.+. +..+.+||||.||-|+|..||+||+|+.++.
T Consensus 592 V~~l~~~-----g~~VamVGDGINDAPALA~AdVGiAmG~GtD 629 (713)
T COG2217 592 VRELQAE-----GRKVAMVGDGINDAPALAAADVGIAMGSGTD 629 (713)
T ss_pred HHHHHhc-----CCEEEEEeCCchhHHHHhhcCeeEeecCCcH
Confidence 9999853 3578899999999999999999999998653
No 71
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.44 E-value=1e-06 Score=96.98 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=78.7
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
...+|||+.++++.++++| +++.|+|++- ...++.++++.|++ ++++ ..+.+|.+.
T Consensus 403 ~d~l~~~a~e~i~~Lk~~G---i~v~ilSgd~-~~~a~~ia~~lgi~---~~~~-----------------~~p~~K~~~ 458 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRG---IEPVMLTGDN-RKTAKAVAKELGIN---VRAE-----------------VLPDDKAAL 458 (562)
T ss_pred cccccHHHHHHHHHHHHcC---CeEEEEcCCC-HHHHHHHHHHcCCc---EEcc-----------------CChHHHHHH
Confidence 4579999999999999999 9999999984 77899999988763 3332 134589999
Q ss_pred HHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
++++... +.+++|||||.||.++++.||+||.++....+.
T Consensus 459 v~~l~~~-----~~~v~~VGDg~nD~~al~~A~vgia~g~g~~~a 498 (562)
T TIGR01511 459 IKELQEK-----GRVVAMVGDGINDAPALAQADVGIAIGAGTDVA 498 (562)
T ss_pred HHHHHHc-----CCEEEEEeCCCccHHHHhhCCEEEEeCCcCHHH
Confidence 9988752 367999999999999999999999998755443
No 72
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.42 E-value=8.8e-06 Score=76.20 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=65.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.||..++++.++ . +++|+|.+. ...+...++..|+.. ..|++.+-. + .......-+.
T Consensus 82 ~~~~~~g~~~~L~~L~--~----~~~i~Tn~~-~~~~~~~l~~~gl~~~fd~i~~~~~~-------~---~~~~~~KP~p 144 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP--G----RKIIFTNGD-RAHARRALNRLGIEDCFDGIFCFDTA-------N---PDYLLPKPSP 144 (184)
T ss_pred hCCCCHHHHHHHHhCC--C----CEEEEeCCC-HHHHHHHHHHcCcHhhhCeEEEeecc-------c---CccCCCCCCH
Confidence 4668899999999886 3 689999985 678889998877632 234332110 0 0000011234
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccE
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGI 435 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigi 435 (499)
..+...++..+.. +.++++|||+..|+.+++.+|+..
T Consensus 145 ~~~~~~~~~~~~~-~~~~l~vgD~~~di~aA~~~G~~~ 181 (184)
T TIGR01993 145 QAYEKALREAGVD-PERAIFFDDSARNIAAAKALGMKT 181 (184)
T ss_pred HHHHHHHHHhCCC-ccceEEEeCCHHHHHHHHHcCCEE
Confidence 5566666655543 578999999999999999999743
No 73
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.42 E-value=1.2e-06 Score=79.51 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCC--------------hHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--------------GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV 387 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--------------~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~ 387 (499)
.+.||+.++++.|+++| +++.|+|.+-. ...+...++..++.....+.. .......
T Consensus 27 ~~~~g~~~~l~~Lk~~g---~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~~~~~- 96 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAG---YTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFC------PHHPADN- 96 (147)
T ss_pred EEcCChHHHHHHHHHCC---CEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEEC------CCCCCCC-
Confidence 57899999999999999 99999998621 035666777776542211111 0000000
Q ss_pred ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEc
Q 010855 388 NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIG 438 (499)
Q Consensus 388 ~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~ 438 (499)
.....-|.+.+...+...+.+ ..+++||||+..|+.+++.+++ .|.+.
T Consensus 97 --~~~~KP~~~~~~~~~~~~~~~-~~e~i~IGDs~~Di~~A~~~Gi~~v~i~ 145 (147)
T TIGR01656 97 --CSCRKPKPGLILEALKRLGVD-ASRSLVVGDRLRDLQAARNAGLAAVLLV 145 (147)
T ss_pred --CCCCCCCHHHHHHHHHHcCCC-hHHEEEEcCCHHHHHHHHHCCCCEEEec
Confidence 001123566777777766653 5789999999999999999997 44443
No 74
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.39 E-value=1.5e-05 Score=73.92 Aligned_cols=93 Identities=12% Similarity=0.050 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
+.+.||+.++++.++++| +++.|+|.+. ... ...+.+.|+. ...|++.+ .+ ..+.-+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g---~~~~i~Tn~~-~~~-~~~~~~~~l~~~f~~i~~~~----------~~----~~~KP~~~ 144 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARG---KKLALLTNSP-RDH-AVLVQELGLRDLFDVVIFSG----------DV----GRGKPDPD 144 (183)
T ss_pred CccCcCHHHHHHHHHHCC---CeEEEEeCCc-hHH-HHHHHhcCCHHHCCEEEEcC----------CC----CCCCCCHH
Confidence 689999999999999999 9999999986 444 4444445552 12233210 00 00111234
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
.++......+.. +.++++|||+..|+.+++.+++
T Consensus 145 ~~~~~~~~~~~~-~~~~~~vgD~~~di~aA~~~G~ 178 (183)
T TIGR01509 145 IYLLALKKLGLK-PEECLFVDDSPAGIEAAKAAGM 178 (183)
T ss_pred HHHHHHHHcCCC-cceEEEEcCCHHHHHHHHHcCC
Confidence 555555555543 5789999999999999999996
No 75
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=98.38 E-value=1.2e-05 Score=76.23 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=60.0
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
..++..++++.++++| +++.|+|++. ...++.+|+..|+.. ..+++- ++ . + . .-+...+
T Consensus 107 ~~~~~~~~L~~l~~~g---~~~~i~T~~~-~~~~~~~l~~~gl~~~f~~~~~~----~~-~--~-------~-KP~p~~~ 167 (197)
T TIGR01548 107 TLLTPKGLLRELHRAP---KGMAVVTGRP-RKDAAKFLTTHGLEILFPVQIWM----ED-C--P-------P-KPNPEPL 167 (197)
T ss_pred cccCHHHHHHHHHHcC---CcEEEECCCC-HHHHHHHHHHcCchhhCCEEEee----cC-C--C-------C-CcCHHHH
Confidence 4455699999999999 9999999985 778999999887632 112221 11 0 0 0 1133445
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhc
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEA 431 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A 431 (499)
...++..+.. ..++++|||+.+|+.+++.|
T Consensus 168 ~~~~~~~~~~-~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 168 ILAAKALGVE-ACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HHHHHHhCcC-cccEEEEeCCHHHHHHHHhC
Confidence 5555544443 46899999999999998764
No 76
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.34 E-value=1.9e-06 Score=99.61 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=79.6
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEe-eceEe-eCCeee---c--cccccCCCh
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHS-NELVY-EESIST---G--EIVNKLESP 393 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~a-N~l~~-~~g~~t---G--~~~~~~~~g 393 (499)
-++||+..+.++.|++.| +++.+||+- +..-...+.++.|+....+++ .++.. ++..+. . .+ -..+++
T Consensus 549 Dp~R~~a~~aI~~l~~aG---I~v~miTGD-~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~V-fAr~sP 623 (903)
T PRK15122 549 DPPKESAAPAIAALRENG---VAVKVLTGD-NPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTV-FAKLTP 623 (903)
T ss_pred CccHHHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCE-EEEeCH
Confidence 489999999999999999 999999986 455667777777764222221 11110 000000 0 00 113578
Q ss_pred hhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 394 LEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 394 ~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
.+|.++++.+.+. +..|.++|||.||.++|+.||+||+|+.++.++
T Consensus 624 e~K~~iV~~Lq~~-----G~vVamtGDGvNDaPALk~ADVGIAmg~gtdvA 669 (903)
T PRK15122 624 LQKSRVLKALQAN-----GHTVGFLGDGINDAPALRDADVGISVDSGADIA 669 (903)
T ss_pred HHHHHHHHHHHhC-----CCEEEEECCCchhHHHHHhCCEEEEeCcccHHH
Confidence 8999999998853 345669999999999999999999999655443
No 77
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.34 E-value=2.5e-06 Score=98.37 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=80.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEee-ceEe-eCCeeec-----cccccCCC
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSN-ELVY-EESISTG-----EIVNKLES 392 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN-~l~~-~~g~~tG-----~~~~~~~~ 392 (499)
.-++||+.++.++.|++.| +++.+||+- ...-...+.++.|+...+++.. ++.- ++..+.. .+ -..++
T Consensus 513 ~Dp~R~~~~~aI~~l~~aG---I~vvmiTGD-~~~tA~aIA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~v-fAr~~ 587 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNG---INVKVLTGD-NEIVTARICQEVGIDANDFLLGADIEELSDEELARELRKYHI-FARLT 587 (867)
T ss_pred eCCCchhHHHHHHHHHHCC---CEEEEEcCC-CHHHHHHHHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeE-EEECC
Confidence 3489999999999999999 999999986 4556677777777743223221 1110 0000000 00 01267
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
+.+|.++++.+.+. +..|.++|||.||.++|+.||+||+|+.++.++
T Consensus 588 Pe~K~~iV~~lq~~-----G~vVam~GDGvNDapALk~AdVGIAmg~gtdvA 634 (867)
T TIGR01524 588 PMQKSRIIGLLKKA-----GHTVGFLGDGINDAPALRKADVGISVDTAADIA 634 (867)
T ss_pred HHHHHHHHHHHHhC-----CCEEEEECCCcccHHHHHhCCEEEEeCCccHHH
Confidence 88999999998753 356679999999999999999999999655443
No 78
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.32 E-value=2.6e-06 Score=98.53 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=80.7
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEee-ceEe-eCCeee---c--cccccCCC
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSN-ELVY-EESIST---G--EIVNKLES 392 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN-~l~~-~~g~~t---G--~~~~~~~~ 392 (499)
.-++||+..+.++.|++.| +++.++|+- ...-...+.++.|+....+++. ++.. ++.... . .+- ..++
T Consensus 548 ~Dp~R~~a~~aI~~l~~aG---I~v~miTGD-~~~tA~~IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~Vf-Ar~s 622 (902)
T PRK10517 548 LDPPKETTAPALKALKASG---VTVKILTGD-SELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLF-ARLT 622 (902)
T ss_pred hCcchhhHHHHHHHHHHCC---CEEEEEcCC-CHHHHHHHHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEE-EEcC
Confidence 3489999999999999999 999999986 4666777777878743333221 1110 000000 0 011 1367
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
+.+|.++++.+.+. +..|.++|||.||.++|+.||+||+|+.....+
T Consensus 623 Pe~K~~IV~~Lq~~-----G~vVam~GDGvNDaPALk~ADVGIAmg~gtdvA 669 (902)
T PRK10517 623 PMHKERIVTLLKRE-----GHVVGFMGDGINDAPALRAADIGISVDGAVDIA 669 (902)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEECCCcchHHHHHhCCEEEEeCCcCHHH
Confidence 88999999998853 345669999999999999999999999655433
No 79
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=98.30 E-value=4.4e-06 Score=86.36 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEec----cCChHHHHH-----------HHHcCCCCceEEEeeceEeeCCeeecc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSY----CWCGDLIRS-----------AFASGDLNAFRVHSNELVYEESISTGE 385 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~----g~s~~~I~~-----------~L~~~gl~~~~I~aN~l~~~~g~~tG~ 385 (499)
+.+.||+.++++.|+++| +++.|+|. |+ +.+++. +++..++....++ +.+.
T Consensus 29 ~~l~pGV~e~L~~Lk~~G---~kL~IvTNq~g~G~-~~~~~~~l~~~~~~i~~iL~~~gl~fd~i~----------i~~~ 94 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAG---YKLVMVTNQDGLGT-DSFPQEDFDPPHNLMMQIFESQGIKFDEVL----------ICPH 94 (354)
T ss_pred ceECcCHHHHHHHHHhCC---CeEEEEECCccccC-ccccHHHHhhHHHHHHHHHHHcCCceeeEE----------EeCC
Confidence 689999999999999999 99999998 33 334444 4444444211111 1110
Q ss_pred c-cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEc
Q 010855 386 I-VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIG 438 (499)
Q Consensus 386 ~-~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~ 438 (499)
. ...+.++..|...+..++...+.+ +.+++||||+.+|+.+++.+++ .|.+.
T Consensus 95 ~~sd~~~~rKP~p~~l~~a~~~l~v~-~~~svmIGDs~sDi~aAk~aGi~~I~v~ 148 (354)
T PRK05446 95 FPEDNCSCRKPKTGLVEEYLAEGAID-LANSYVIGDRETDVQLAENMGIKGIRYA 148 (354)
T ss_pred cCcccCCCCCCCHHHHHHHHHHcCCC-cccEEEEcCCHHHHHHHHHCCCeEEEEE
Confidence 0 011223345667777777665543 5789999999999999999998 45543
No 80
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=98.29 E-value=1.6e-05 Score=76.14 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=65.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHH-HHHHHHcCCCC--ceEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDL-IRSAFASGDLN--AFRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~-I~~~L~~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
.+.+.||+.++++.|+++| +++.|+|.++.... ....+...++. ...|++..- .|. .++ .
T Consensus 92 ~~~~~~~~~~~L~~L~~~g---~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~-------~~~-~KP------~ 154 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKG---FKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCL-------EGL-RKP------D 154 (211)
T ss_pred ccccChhHHHHHHHHHHCC---CeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeee-------cCC-CCC------C
Confidence 5789999999999999999 99999998753220 11112222221 122332110 000 011 1
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcCCchHH
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGSSSSLR 444 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~~~~L~ 444 (499)
...+...+...+. .+.++++|||+..|+.+++.+|+ .|.+.+...+.
T Consensus 155 p~~~~~~~~~~g~-~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~~~~~ 202 (211)
T TIGR02247 155 PRIYQLMLERLGV-APEECVFLDDLGSNLKPAAALGITTIKVSDEEQAI 202 (211)
T ss_pred HHHHHHHHHHcCC-CHHHeEEEcCCHHHHHHHHHcCCEEEEECCHHHHH
Confidence 3345555555544 25789999999999999999998 55555544443
No 81
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.28 E-value=2.8e-06 Score=96.70 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=80.3
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEE-eeceEee-C-Ceee-cccc--------c
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVH-SNELVYE-E-SIST-GEIV--------N 388 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~-aN~l~~~-~-g~~t-G~~~--------~ 388 (499)
-++||+..+.++.|++.| +++.++|+- +..-.+.+.++.|+... ++ ++++.-. + ...+ .++. -
T Consensus 441 Dp~R~~a~~aI~~l~~aG---I~v~miTGD-~~~tA~~IA~~lGI~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf 515 (755)
T TIGR01647 441 DPPRHDTKETIERARHLG---VEVKMVTGD-HLAIAKETARRLGLGTN-IYTADVLLKGDNRDDLPSGELGEMVEDADGF 515 (755)
T ss_pred CCChhhHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCC-CcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence 489999999999999999 999999986 46677788888887431 22 1111100 0 0000 0000 0
Q ss_pred cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 389 KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 389 ~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
..+++.+|.++++.+.+. +..|.++|||.||.++|+.||+||+++..+..+
T Consensus 516 Ar~~Pe~K~~iV~~lq~~-----G~~VamvGDGvNDapAL~~AdVGIAm~~gtdvA 566 (755)
T TIGR01647 516 AEVFPEHKYEIVEILQKR-----GHLVGMTGDGVNDAPALKKADVGIAVAGATDAA 566 (755)
T ss_pred EecCHHHHHHHHHHHHhc-----CCEEEEEcCCcccHHHHHhCCeeEEecCCcHHH
Confidence 135778999999998753 356779999999999999999999998655443
No 82
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=98.28 E-value=2.4e-05 Score=73.17 Aligned_cols=94 Identities=7% Similarity=-0.090 Sum_probs=64.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.|| .+++..+++ + .++.|+|++. ...++..|++.++.. ..|++.+ . .....-+.
T Consensus 86 ~~~~~~~-~e~L~~L~~-~---~~l~I~T~~~-~~~~~~~l~~~~l~~~fd~i~~~~-----~---------~~~~KP~p 145 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHG-R---RPMAVGTGSE-SAIAEALLAHLGLRRYFDAVVAAD-----D---------VQHHKPAP 145 (188)
T ss_pred cCCCccH-HHHHHHHHh-C---CCEEEEcCCc-hHHHHHHHHhCCcHhHceEEEehh-----h---------ccCCCCCh
Confidence 4556676 588888875 4 6899999986 678888898887632 2233321 0 00112244
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
+.+.......+.. +.++|||||+..|+.++..||+.
T Consensus 146 ~~~~~~~~~~~~~-~~~~l~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 146 DTFLRCAQLMGVQ-PTQCVVFEDADFGIQAARAAGMD 181 (188)
T ss_pred HHHHHHHHHcCCC-HHHeEEEeccHhhHHHHHHCCCE
Confidence 5666666665553 57899999999999999999974
No 83
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=98.24 E-value=1.1e-05 Score=79.14 Aligned_cols=96 Identities=18% Similarity=0.205 Sum_probs=62.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEecc---CChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYC---WCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g---~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
...+.||+.++++.++++| +++++||+- -....++.+++.+|++..+.+ .+ +++|.-. .-.+|
T Consensus 112 ~a~p~~Ga~elL~~L~~~G---~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f--~v-----il~gd~~----~K~~K 177 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRG---DSIYFITGRTATKTETVSKTLADDFHIPADNMN--PV-----IFAGDKP----GQYTK 177 (237)
T ss_pred cCcchHHHHHHHHHHHHCC---CeEEEEeCCCCcccHHHHHHHHHHcCCCcccce--eE-----EEcCCCC----CCCCH
Confidence 3568889999999999999 999999982 124466777766777423211 11 1222211 11345
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIG 438 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~ 438 (499)
...++ .. ..+|||||+.+|+.+++.||+ +|.+.
T Consensus 178 ~~~l~----~~-----~i~I~IGDs~~Di~aA~~AGi~~I~v~ 211 (237)
T PRK11009 178 TQWLK----KK-----NIRIFYGDSDNDITAAREAGARGIRIL 211 (237)
T ss_pred HHHHH----hc-----CCeEEEcCCHHHHHHHHHcCCcEEEEe
Confidence 55443 22 237999999999999999997 45443
No 84
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.24 E-value=5.4e-06 Score=96.63 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=78.1
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEE-eeceEee-CCeee---ccc-cccCCC
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVH-SNELVYE-ESIST---GEI-VNKLES 392 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~-aN~l~~~-~g~~t---G~~-~~~~~~ 392 (499)
-++||+..+.++.|++.| +++.++|+- ...-...+.++.|+.. ..++ .+++..- +..+. .+. ....++
T Consensus 578 Dplr~~~~~aI~~l~~aG---I~v~miTGD-~~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~s 653 (941)
T TIGR01517 578 DPLRPGVREAVQECQRAG---ITVRMVTGD-NIDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSS 653 (941)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEECCC-ChHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECC
Confidence 489999999999999999 999999986 4556667777777632 1111 1111100 00000 000 012367
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc-CCchH
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG-SSSSL 443 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~-~~~~L 443 (499)
+.+|.++++.+.+. +..|.++|||.||.+||+.||+||+++ .+...
T Consensus 654 Pe~K~~iV~~lq~~-----g~vVam~GDGvNDapALk~AdVGIAmg~~gtdv 700 (941)
T TIGR01517 654 PLDKQLLVLMLKDM-----GEVVAVTGDGTNDAPALKLADVGFSMGISGTEV 700 (941)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEECCCCchHHHHHhCCcceecCCCccHH
Confidence 88999999998753 346779999999999999999999998 44443
No 85
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.22 E-value=4.2e-06 Score=91.77 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=77.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcc-cEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKT-DVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~-~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
.-.+|||..+.++.|+++| + ++.|+|+.- ....+.++++.|++ +++++ ..+.+|.+
T Consensus 360 ~d~l~~~~~e~i~~L~~~G---i~~v~vvTgd~-~~~a~~i~~~lgi~--~~f~~-----------------~~p~~K~~ 416 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALG---IEKVVMLTGDR-RAVAERVARELGID--EVHAE-----------------LLPEDKLE 416 (536)
T ss_pred eccchHHHHHHHHHHHHcC---CCcEEEEcCCC-HHHHHHHHHHcCCh--hhhhc-----------------cCcHHHHH
Confidence 4589999999999999999 9 999999884 77889999988763 22221 23458999
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc-CCchH
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG-SSSSL 443 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~-~~~~L 443 (499)
.++++... ..+++|||||.||+++++.||+||.++ ..+.+
T Consensus 417 ~i~~l~~~-----~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~ 457 (536)
T TIGR01512 417 IVKELREK-----YGPVAMVGDGINDAPALAAADVGIAMGASGSDV 457 (536)
T ss_pred HHHHHHhc-----CCEEEEEeCCHHHHHHHHhCCEEEEeCCCccHH
Confidence 99988753 357999999999999999999999998 44333
No 86
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=98.19 E-value=0.0001 Score=72.20 Aligned_cols=95 Identities=6% Similarity=-0.056 Sum_probs=60.7
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
.+.+.||+.++++.|++ + +++.|+|.|= .. ++..|+.. ..|++.+ .+. ...-+.
T Consensus 111 ~~~~~~gv~~~L~~L~~-~---~~l~i~Tn~~-~~-----~~~~gl~~~fd~i~~~~----------~~~----~~KP~p 166 (238)
T PRK10748 111 RIDVPQATHDTLKQLAK-K---WPLVAITNGN-AQ-----PELFGLGDYFEFVLRAG----------PHG----RSKPFS 166 (238)
T ss_pred cCCCCccHHHHHHHHHc-C---CCEEEEECCC-ch-----HHHCCcHHhhceeEecc----------cCC----cCCCcH
Confidence 57888999999999986 4 6899999873 33 23445421 2232221 100 111244
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCC-cccHHHHHhcCc-cEEEcC
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGS-PGDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l~~Adi-giv~~~ 439 (499)
..+...+...+. .+.++++|||+ ..|+.+++.+|+ .|.+.+
T Consensus 167 ~~~~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~ 209 (238)
T PRK10748 167 DMYHLAAEKLNV-PIGEILHVGDDLTTDVAGAIRCGMQACWINP 209 (238)
T ss_pred HHHHHHHHHcCC-ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence 556655555554 25789999999 599999999997 444443
No 87
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.19 E-value=4.8e-05 Score=89.49 Aligned_cols=99 Identities=15% Similarity=0.034 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC---ceEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN---AFRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~---~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
.+.||+.++++.|+++| +++.|+|.+. ...++..|++.++. ...|++.+- . ..+.-+.+
T Consensus 161 ~~~pG~~elL~~Lk~~G---~~l~IvSn~~-~~~~~~~L~~~gl~~~~Fd~iv~~~~-----~---------~~~KP~Pe 222 (1057)
T PLN02919 161 IGFPGALELITQCKNKG---LKVAVASSAD-RIKVDANLAAAGLPLSMFDAIVSADA-----F---------ENLKPAPD 222 (1057)
T ss_pred ccCccHHHHHHHHHhCC---CeEEEEeCCc-HHHHHHHHHHcCCChhHCCEEEECcc-----c---------ccCCCCHH
Confidence 47899999999999999 9999999885 67888889887763 123333210 0 01111345
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcC
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~ 439 (499)
.+...+...+.. +.++++|||+..|+.+++.|++ -|.+..
T Consensus 223 ~~~~a~~~lgv~-p~e~v~IgDs~~Di~AA~~aGm~~I~v~~ 263 (1057)
T PLN02919 223 IFLAAAKILGVP-TSECVVIEDALAGVQAARAAGMRCIAVTT 263 (1057)
T ss_pred HHHHHHHHcCcC-cccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence 555556555553 5789999999999999999997 344443
No 88
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.19 E-value=6.2e-06 Score=96.72 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=80.7
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEe-eCCeeecccc------------
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVY-EESISTGEIV------------ 387 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~-~~g~~tG~~~------------ 387 (499)
-++||+..+.++.|++.| +++.+||+. ...-...+.++.|+.....+.+.-.. ++.+.+|.-.
T Consensus 645 Dp~r~~v~~aI~~l~~aG---Ikv~MiTGD-~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~ 720 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAG---INVHMLTGD-FPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLK 720 (1053)
T ss_pred cCCchhHHHHHHHHHHCC---CEEEEECCC-CHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHh
Confidence 489999999999999999 999999987 36677777778787322111111000 1123333210
Q ss_pred -----ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc-CCchH
Q 010855 388 -----NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG-SSSSL 443 (499)
Q Consensus 388 -----~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~-~~~~L 443 (499)
...+++.+|.++++.+.+. +..+.++|||.||.+||+.||+||+|+ .++..
T Consensus 721 ~~~~V~ar~sP~~K~~iV~~lq~~-----g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~v 777 (1053)
T TIGR01523 721 ALCLVIARCAPQTKVKMIEALHRR-----KAFCAMTGDGVNDSPSLKMANVGIAMGINGSDV 777 (1053)
T ss_pred hcCeEEEecCHHHHHHHHHHHHhc-----CCeeEEeCCCcchHHHHHhCCccEecCCCccHH
Confidence 1236788999999988753 356779999999999999999999998 44433
No 89
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.18 E-value=7.2e-06 Score=93.13 Aligned_cols=95 Identities=14% Similarity=0.161 Sum_probs=77.2
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
.-++|||+.+.++.+++.| ++++++|+- .....+.+.++.|+. ++++ ..+.+|...
T Consensus 566 ~d~~r~~a~~~i~~L~~~g---i~~~llTGd-~~~~a~~ia~~lgi~---~~~~-----------------~~p~~K~~~ 621 (741)
T PRK11033 566 QDTLRADARQAISELKALG---IKGVMLTGD-NPRAAAAIAGELGID---FRAG-----------------LLPEDKVKA 621 (741)
T ss_pred ecCCchhHHHHHHHHHHCC---CEEEEEcCC-CHHHHHHHHHHcCCC---eecC-----------------CCHHHHHHH
Confidence 3589999999999999999 999999987 467888888888753 2221 345689999
Q ss_pred HHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
++++.+ ...+++||||.||.++|..||+||+++..+...
T Consensus 622 v~~l~~------~~~v~mvGDgiNDapAl~~A~vgia~g~~~~~a 660 (741)
T PRK11033 622 VTELNQ------HAPLAMVGDGINDAPAMKAASIGIAMGSGTDVA 660 (741)
T ss_pred HHHHhc------CCCEEEEECCHHhHHHHHhCCeeEEecCCCHHH
Confidence 998863 246889999999999999999999998765443
No 90
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.18 E-value=1.3e-05 Score=92.44 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
-++|||+.+.++.+++.| +++.++|+. +....+.++++.|++ +++++ ..+.+|.+.+
T Consensus 649 d~~r~~a~~~i~~L~~~g---i~v~~~Tgd-~~~~a~~ia~~lgi~--~~~~~-----------------~~p~~K~~~i 705 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAG---YRLVMLTGD-NPTTANAIAKEAGID--EVIAG-----------------VLPDGKAEAI 705 (834)
T ss_pred CcchhhHHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCCC--EEEeC-----------------CCHHHHHHHH
Confidence 478999999999999999 999999987 466788888887763 33331 2245799999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCch
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSS 442 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~ 442 (499)
+++... +.++++||||.||.+|++.||+||+++..+.
T Consensus 706 ~~l~~~-----~~~v~~vGDg~nD~~al~~Agvgia~g~g~~ 742 (834)
T PRK10671 706 KRLQSQ-----GRQVAMVGDGINDAPALAQADVGIAMGGGSD 742 (834)
T ss_pred HHHhhc-----CCEEEEEeCCHHHHHHHHhCCeeEEecCCCH
Confidence 988743 3578999999999999999999999987643
No 91
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.12 E-value=1.4e-05 Score=88.11 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=77.9
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
+..++||+.+.++.|+++|. +++.|+|+. .....+.++++.|++ +++++ +.+.+|...
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~--i~v~ivTgd-~~~~a~~i~~~lgi~--~~f~~-----------------~~p~~K~~~ 439 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGG--IKLVMLTGD-NRSAAEAVAAELGID--EVHAE-----------------LLPEDKLAI 439 (556)
T ss_pred cccchHhHHHHHHHHHHcCC--CeEEEEeCC-CHHHHHHHHHHhCCC--eeecc-----------------CCHHHHHHH
Confidence 46899999999999998762 689999987 467889999988762 33321 234689999
Q ss_pred HHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
++++... +.+++|+|||.||.++++.||+||.++..+.+.
T Consensus 440 v~~l~~~-----~~~v~~vGDg~nD~~al~~A~vgia~g~~~~~~ 479 (556)
T TIGR01525 440 VKELQEE-----GGVVAMVGDGINDAPALAAADVGIAMGAGSDVA 479 (556)
T ss_pred HHHHHHc-----CCEEEEEECChhHHHHHhhCCEeEEeCCCCHHH
Confidence 9888752 358999999999999999999999998655444
No 92
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=98.11 E-value=1.4e-05 Score=74.89 Aligned_cols=103 Identities=14% Similarity=-0.013 Sum_probs=62.4
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccC-------C-------hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCW-------C-------GDLIRSAFASGDLNAFRVHSNELVYEESISTGEI 386 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~-------s-------~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~ 386 (499)
+.+.||+.+++++|+++| +++.|+|.+= . ...+...++..|+....++.... ..+.
T Consensus 28 ~~~~pgv~e~L~~Lk~~g---~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~f~~i~~~~~------~~~~- 97 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAG---YRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGGRLDGIYYCPH------HPED- 97 (181)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCccceEEECCC------CCCC-
Confidence 357799999999999999 9999999751 1 12344455555542222221100 0000
Q ss_pred cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEE
Q 010855 387 VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIV 436 (499)
Q Consensus 387 ~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv 436 (499)
......-+...+...+...+.. ..++++|||+.+|+.++..+++.++
T Consensus 98 --~~~~~KP~p~~~~~~~~~l~~~-~~~~~~VgDs~~Di~~A~~aG~~~i 144 (181)
T PRK08942 98 --GCDCRKPKPGMLLSIAERLNID-LAGSPMVGDSLRDLQAAAAAGVTPV 144 (181)
T ss_pred --CCcCCCCCHHHHHHHHHHcCCC-hhhEEEEeCCHHHHHHHHHCCCeEE
Confidence 0001111244555555555543 5789999999999999999997433
No 93
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.11 E-value=1.5e-05 Score=92.40 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=76.0
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEE-eeceEe-eCCee---ec--cccccCCC
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVH-SNELVY-EESIS---TG--EIVNKLES 392 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~-aN~l~~-~~g~~---tG--~~~~~~~~ 392 (499)
++|||+.+.++.|++.| +++.++|+- ...-...+.++.|+.. ..++ ..++.- ++... .. .+ ...++
T Consensus 528 p~r~~~~~~i~~l~~~G---i~v~miTGD-~~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~V-far~~ 602 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGG---VRIIMITGD-SQETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAV-FARAS 602 (884)
T ss_pred cchhHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeE-EEECC
Confidence 88999999999999999 999999987 4667777778877632 1111 111110 00000 00 01 11256
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~ 439 (499)
+.+|.++++.+... +..+.++|||.||.++++.||+||.++.
T Consensus 603 P~~K~~iv~~lq~~-----g~~v~mvGDGvND~pAl~~AdVGia~g~ 644 (884)
T TIGR01522 603 PEHKMKIVKALQKR-----GDVVAMTGDGVNDAPALKLADIGVAMGQ 644 (884)
T ss_pred HHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHHhCCeeEecCC
Confidence 78999999887753 3567899999999999999999999973
No 94
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.10 E-value=1.6e-05 Score=72.76 Aligned_cols=86 Identities=19% Similarity=0.270 Sum_probs=68.0
Q ss_pred HHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCC
Q 010855 330 FFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSN 409 (499)
Q Consensus 330 fl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~ 409 (499)
.++.|+++| +.+.|+|++. ...+..++++.|+. .++. + ...|...+.+++...+.
T Consensus 36 ~i~~Lk~~G---~~i~IvTn~~-~~~~~~~l~~~gi~--~~~~-----------~--------~~~k~~~~~~~~~~~~~ 90 (154)
T TIGR01670 36 GIRCALKSG---IEVAIITGRK-AKLVEDRCKTLGIT--HLYQ-----------G--------QSNKLIAFSDILEKLAL 90 (154)
T ss_pred HHHHHHHCC---CEEEEEECCC-CHHHHHHHHHcCCC--EEEe-----------c--------ccchHHHHHHHHHHcCC
Confidence 688899999 9999999996 56788889888753 2221 1 02478888888877665
Q ss_pred CCCceEEEEcCCcccHHHHHhcCccEEEcCCc
Q 010855 410 DEQNLTVYIGGSPGDLLCLLEADIGIVIGSSS 441 (499)
Q Consensus 410 ~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~ 441 (499)
+ ...++|||||.+|+.|+..+++++++.+..
T Consensus 91 ~-~~~~~~vGDs~~D~~~~~~ag~~~~v~~~~ 121 (154)
T TIGR01670 91 A-PENVAYIGDDLIDWPVMEKVGLSVAVADAH 121 (154)
T ss_pred C-HHHEEEECCCHHHHHHHHHCCCeEecCCcC
Confidence 3 478999999999999999999999987653
No 95
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=98.02 E-value=1.8e-05 Score=73.53 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=68.1
Q ss_pred HHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCC
Q 010855 331 FQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSND 410 (499)
Q Consensus 331 l~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~ 410 (499)
++.|+++| +++.|+|.+- ...++..++.+++. +++. +. ..|...++.+++..+.+
T Consensus 43 ~~~L~~~G---i~laIiT~k~-~~~~~~~l~~lgi~--~~f~-------~~------------kpkp~~~~~~~~~l~~~ 97 (169)
T TIGR02726 43 VIVLQLCG---IDVAIITSKK-SGAVRHRAEELKIK--RFHE-------GI------------KKKTEPYAQMLEEMNIS 97 (169)
T ss_pred HHHHHHCC---CEEEEEECCC-cHHHHHHHHHCCCc--EEEe-------cC------------CCCHHHHHHHHHHcCcC
Confidence 44566778 9999999995 67899999988763 2221 00 24667788888777653
Q ss_pred CCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhh
Q 010855 411 EQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLG 447 (499)
Q Consensus 411 ~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~ 447 (499)
..+++||||+.||+.|++.|++++++.+. +.++..+
T Consensus 98 -~~ev~~iGD~~nDi~~~~~ag~~~am~nA~~~lk~~A 134 (169)
T TIGR02726 98 -DAEVCYVGDDLVDLSMMKRVGLAVAVGDAVADVKEAA 134 (169)
T ss_pred -HHHEEEECCCHHHHHHHHHCCCeEECcCchHHHHHhC
Confidence 47899999999999999999999999864 4555443
No 96
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.02 E-value=2.2e-05 Score=87.50 Aligned_cols=94 Identities=20% Similarity=0.170 Sum_probs=76.9
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
-++||++...+..|++.| ++++++++- ...-.+.+.++.| ...|+|+ ..+.+|.+.+
T Consensus 722 D~vr~~a~~av~~Lk~~G---i~v~mLTGD-n~~aA~svA~~VG--i~~V~ae-----------------v~P~~K~~~I 778 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMG---IKVVMLTGD-NDAAARSVAQQVG--IDNVYAE-----------------VLPEQKAEKI 778 (951)
T ss_pred cccchhHHHHHHHHHhcC---ceEEEEcCC-CHHHHHHHHHhhC--cceEEec-----------------cCchhhHHHH
Confidence 489999999999999999 999999984 2345677777766 3566764 2345899999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCch
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSS 442 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~ 442 (499)
+++..+ +..+.++|||.||-++|..||+||+++.++.
T Consensus 779 k~lq~~-----~~~VaMVGDGINDaPALA~AdVGIaig~gs~ 815 (951)
T KOG0207|consen 779 KEIQKN-----GGPVAMVGDGINDAPALAQADVGIAIGAGSD 815 (951)
T ss_pred HHHHhc-----CCcEEEEeCCCCccHHHHhhccceeeccccH
Confidence 999864 3568899999999999999999999998754
No 97
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.00 E-value=3e-05 Score=90.24 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=76.8
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCC---eeec--------c-c
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEES---ISTG--------E-I 386 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g---~~tG--------~-~ 386 (499)
-++|||..+.++.|++.| +++.++|+- ...-...+.++.|+.. ..+... .+.+. .... + .
T Consensus 536 Dplr~~v~e~I~~l~~aG---I~v~miTGD-~~~tA~~ia~~~gi~~~~~~v~~~--~~~g~~l~~~~~~~~~~~~~~~~ 609 (917)
T TIGR01116 536 DPPRPEVADAIEKCRTAG---IRVIMITGD-NKETAEAICRRIGIFSPDEDVTFK--SFTGREFDEMGPAKQRAACRSAV 609 (917)
T ss_pred CCCchhHHHHHHHHHHCC---CEEEEecCC-CHHHHHHHHHHcCCCCCCccccce--eeeHHHHhhCCHHHHHHhhhcCe
Confidence 479999999999999999 999999976 4566777777777632 111110 01100 0000 0 0
Q ss_pred cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHH
Q 010855 387 VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLR 444 (499)
Q Consensus 387 ~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~ 444 (499)
...-+++.+|.++++.+... +..+.++|||.||.+|++.||+||+++.....+
T Consensus 610 v~ar~~P~~K~~iV~~lq~~-----g~~va~iGDG~ND~~alk~AdVGia~g~g~~~a 662 (917)
T TIGR01116 610 LFSRVEPSHKSELVELLQEQ-----GEIVAMTGDGVNDAPALKKADIGIAMGSGTEVA 662 (917)
T ss_pred EEEecCHHHHHHHHHHHHhc-----CCeEEEecCCcchHHHHHhCCeeEECCCCcHHH
Confidence 11235678999998877632 356668999999999999999999998654443
No 98
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.99 E-value=2.9e-05 Score=73.82 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=92.0
Q ss_pred ccCCCHHHHHHHhhc-CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeC-----
Q 010855 306 LKGLNLEDIKWASQH-LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEE----- 379 (499)
Q Consensus 306 f~Gi~~~~l~~~~~~-i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~----- 379 (499)
-.|++.++++++.+. ..|-||+.+.++.++++ ++-+|+|.++ ..+++.+....|++.-+++|+++.+|+
T Consensus 66 ahGVt~~dlrr~sE~sa~lvPgA~etm~~l~~~----~tp~v~STSY-~qy~~r~a~~ig~Prg~~~~Te~~lD~~~~Pe 140 (315)
T COG4030 66 AHGVTNRDLRRISELSAKLVPGAEETMATLQER----WTPVVISTSY-TQYLRRTASMIGVPRGELHGTEVDLDSIAVPE 140 (315)
T ss_pred HhcCcHHHHHHHHHhhcccCCChHHHHHHHhcc----CCceEEeccH-HHHHHHHHHhcCCCccccccccccCccccCCh
Confidence 468999999999885 89999999999999875 7888999988 668888888878877789999988863
Q ss_pred C-e------------eecc--------------------ccc--cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCccc
Q 010855 380 S-I------------STGE--------------------IVN--KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGD 424 (499)
Q Consensus 380 g-~------------~tG~--------------------~~~--~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tD 424 (499)
+ + ..|+ +.. +...|..|+++++.++.....+ ...+|+|||.||
T Consensus 141 eeR~E~L~~~~~~~~~~geelfe~lDe~F~rLip~E~gki~~~vk~VGgg~ka~i~e~~~ele~~d--~sa~~VGDSItD 218 (315)
T COG4030 141 EEREELLSIIDVIASLSGEELFEKLDELFSRLIPSEVGKIVESVKAVGGGEKAKIMEGYCELEGID--FSAVVVGDSITD 218 (315)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHhhcCHHHHHHHHHhhhhccCcchhHHHHHHHhhcCCC--cceeEecCcccc
Confidence 1 0 1121 110 2344567888888888665443 347899999999
Q ss_pred HHHHHhcC
Q 010855 425 LLCLLEAD 432 (499)
Q Consensus 425 l~~l~~Ad 432 (499)
..|++.+.
T Consensus 219 v~ml~~~r 226 (315)
T COG4030 219 VKMLEAAR 226 (315)
T ss_pred hHHHHHhh
Confidence 99999985
No 99
>PLN02811 hydrolase
Probab=97.93 E-value=0.00016 Score=69.82 Aligned_cols=103 Identities=9% Similarity=0.120 Sum_probs=61.9
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
....+.||+.++|+.++++| +++.|+|++....+....++..++. ...++|.+ + . .+ ..+.-+
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g---~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~----~-~---~~----~~~KP~ 139 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKG---IPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGD----D-P---EV----KQGKPA 139 (220)
T ss_pred hhCCCCccHHHHHHHHHHCC---CcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECC----h-h---hc----cCCCCC
Confidence 45788999999999999999 9999999885322332232222221 11233321 0 0 00 001112
Q ss_pred HHHHHHHHhhcC---CCCCceEEEEcCCcccHHHHHhcCcc-EEE
Q 010855 397 LQAFNDILKDHS---NDEQNLTVYIGGSPGDLLCLLEADIG-IVI 437 (499)
Q Consensus 397 ~~~l~~~~~~~~---~~~~~~vIyiGDs~tDl~~l~~Adig-iv~ 437 (499)
...+...+...+ . .+.+++||||+..|+.+++.|++. |.+
T Consensus 140 p~~~~~a~~~~~~~~~-~~~~~v~IgDs~~di~aA~~aG~~~i~v 183 (220)
T PLN02811 140 PDIFLAAARRFEDGPV-DPGKVLVFEDAPSGVEAAKNAGMSVVMV 183 (220)
T ss_pred cHHHHHHHHHhCCCCC-CccceEEEeccHhhHHHHHHCCCeEEEE
Confidence 234444444332 3 247899999999999999999984 444
No 100
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.88 E-value=4.9e-05 Score=71.54 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=65.2
Q ss_pred HHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCC
Q 010855 331 FQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSND 410 (499)
Q Consensus 331 l~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~ 410 (499)
++.++++| +++.|+|+.. ...++.++++.++. .++. | +..|...+++++...+..
T Consensus 57 i~~L~~~G---i~v~I~T~~~-~~~v~~~l~~lgl~--~~f~-----------g--------~~~k~~~l~~~~~~~gl~ 111 (183)
T PRK09484 57 IRCLLTSG---IEVAIITGRK-SKLVEDRMTTLGIT--HLYQ-----------G--------QSNKLIAFSDLLEKLAIA 111 (183)
T ss_pred HHHHHHCC---CEEEEEeCCC-cHHHHHHHHHcCCc--eeec-----------C--------CCcHHHHHHHHHHHhCCC
Confidence 44456678 9999999985 67888999887652 2221 1 135788888888877663
Q ss_pred CCceEEEEcCCcccHHHHHhcCccEEEcCCchH
Q 010855 411 EQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSL 443 (499)
Q Consensus 411 ~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L 443 (499)
..+++|||||.+|+.|++.|++++++++...+
T Consensus 112 -~~ev~~VGDs~~D~~~a~~aG~~~~v~~~~~~ 143 (183)
T PRK09484 112 -PEQVAYIGDDLIDWPVMEKVGLSVAVADAHPL 143 (183)
T ss_pred -HHHEEEECCCHHHHHHHHHCCCeEecCChhHH
Confidence 57899999999999999999998877654333
No 101
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.84 E-value=8.5e-05 Score=64.91 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHH
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFN 401 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 401 (499)
.|-+...+.++.+.+. +.++|-|+-= .-.+...++-.|++...|++- .....|.++++
T Consensus 30 klf~ev~e~iqeL~d~----V~i~IASgDr-~gsl~~lae~~gi~~~rv~a~-----------------a~~e~K~~ii~ 87 (152)
T COG4087 30 KLFSEVSETIQELHDM----VDIYIASGDR-KGSLVQLAEFVGIPVERVFAG-----------------ADPEMKAKIIR 87 (152)
T ss_pred EEcHhhHHHHHHHHHh----heEEEecCCc-chHHHHHHHHcCCceeeeecc-----------------cCHHHHHHHHH
Confidence 4566677888888764 6888888752 336666666555443333221 23357999999
Q ss_pred HHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC
Q 010855 402 DILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 402 ~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~ 439 (499)
++.++ ++.+++||||.||.+||+.||+||+.-.
T Consensus 88 eLkk~-----~~k~vmVGnGaND~laLr~ADlGI~tiq 120 (152)
T COG4087 88 ELKKR-----YEKVVMVGNGANDILALREADLGICTIQ 120 (152)
T ss_pred HhcCC-----CcEEEEecCCcchHHHhhhcccceEEec
Confidence 88863 4789999999999999999999987643
No 102
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.84 E-value=0.00013 Score=70.76 Aligned_cols=98 Identities=10% Similarity=0.063 Sum_probs=66.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc-eEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA-FRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
...+.||+.++++.++++| ++++|+|.| +....+.+++..+..+ ...+..- |+. . .| ..-+..
T Consensus 93 ~~~lypgv~e~L~~Lk~~G---~~l~I~Sn~-s~~~~~~~~~~~~~~~L~~~f~~~--fd~-~-~g--------~KP~p~ 156 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLG---LRLAVYSSG-SVPAQKLLFGHSDAGNLTPYFSGY--FDT-T-VG--------LKTEAQ 156 (220)
T ss_pred ccCcCcCHHHHHHHHHHCC---CEEEEEeCC-CHHHHHHHHhhccccchhhhcceE--EEe-C-cc--------cCCCHH
Confidence 4679999999999999999 999999988 5666677766532101 1111111 111 0 11 122445
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
.+..+++..+.+ +.++++|||+..|+.+++.||+.
T Consensus 157 ~y~~i~~~lgv~-p~e~lfVgDs~~Di~AA~~AG~~ 191 (220)
T TIGR01691 157 SYVKIAGQLGSP-PREILFLSDIINELDAARKAGLH 191 (220)
T ss_pred HHHHHHHHhCcC-hhHEEEEeCCHHHHHHHHHcCCE
Confidence 666666665553 57899999999999999999984
No 103
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.83 E-value=0.00011 Score=68.59 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=68.7
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCC--------------hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--------------GDLIRSAFASGDLNAFRVHSNELVYEESISTGEI 386 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--------------~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~ 386 (499)
+.+.||+.++|+.|+++| +++.|+|.+-. ..++...+...++....++.......+ .+.+
T Consensus 25 ~~~~pgv~e~L~~Lk~~G---~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---~~~~ 98 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMG---YALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEG---VEEF 98 (176)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCCccEEEECCCCCcc---cccc
Confidence 568899999999999999 99999998631 134455666655543333221110110 1111
Q ss_pred cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccE
Q 010855 387 VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGI 435 (499)
Q Consensus 387 ~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigi 435 (499)
......+.-+...+...++..+.+ ..++++|||+.+|+.++..|++..
T Consensus 99 ~~~~~~~KP~p~~~~~a~~~~~~~-~~~~v~VGDs~~Di~aA~~aG~~~ 146 (176)
T TIGR00213 99 RQVCDCRKPKPGMLLQARKELHID-MAQSYMVGDKLEDMQAGVAAKVKT 146 (176)
T ss_pred cCCCCCCCCCHHHHHHHHHHcCcC-hhhEEEEcCCHHHHHHHHHCCCcE
Confidence 111112223456667766666553 578999999999999999999853
No 104
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.83 E-value=8.1e-05 Score=87.32 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=77.1
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEE---EeeceE--e------eC--Ceeecc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRV---HSNELV--Y------EE--SISTGE 385 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I---~aN~l~--~------~~--g~~tG~ 385 (499)
-++||+.++.++.|+++| +++.++|+- ...-...+.++.|+-. ... +.+++. . ++ -+.+|.
T Consensus 567 Dplr~~v~~aI~~l~~~G---i~v~~~TGd-~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~ 642 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAG---IKVIMVTGD-HPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS 642 (997)
T ss_pred CCChHHHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH
Confidence 489999999999999999 999999986 3556677777766521 100 000000 0 00 122321
Q ss_pred c-------------------cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC-CchHH
Q 010855 386 I-------------------VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS-SSSLR 444 (499)
Q Consensus 386 ~-------------------~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~-~~~L~ 444 (499)
- ...-+++.+|.++++.+.+. +..+.++|||.||.+||+.||+||+++. ++..+
T Consensus 643 ~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~-----g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~va 716 (997)
T TIGR01106 643 DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQ-----GAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS 716 (997)
T ss_pred HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHC-----CCEEEEECCCcccHHHHhhCCcceecCCcccHHH
Confidence 1 11124678999999988753 3456699999999999999999999984 44433
No 105
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=97.82 E-value=8.5e-05 Score=68.72 Aligned_cols=88 Identities=10% Similarity=-0.017 Sum_probs=56.2
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
...+.+.||+.++++. +.|+|.+ +...+...+++.++.. ..|++.+. .| .+.-
T Consensus 86 ~~~~~~~~g~~~~L~~----------~~i~Tn~-~~~~~~~~l~~~~l~~~fd~v~~~~~-------~~-------~~KP 140 (175)
T TIGR01493 86 YKNLPPWPDSAAALAR----------VAILSNA-SHWAFDQFAQQAGLPWYFDRAFSVDT-------VR-------AYKP 140 (175)
T ss_pred HhcCCCCCchHHHHHH----------HhhhhCC-CHHHHHHHHHHCCCHHHHhhhccHhh-------cC-------CCCC
Confidence 3467899999999982 5688987 5778898998877632 12333220 00 0011
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA 431 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A 431 (499)
..+.+.......+. .+.++++|||+..|+.+++.+
T Consensus 141 ~p~~f~~~~~~~~~-~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 141 DPVVYELVFDTVGL-PPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred CHHHHHHHHHHHCC-CHHHeEeEecChhhHHHHhcC
Confidence 23344444444444 257899999999999988653
No 106
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.81 E-value=0.0005 Score=68.53 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=71.7
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCC--hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
...+-||+.+|++.++++| ++++|||..-. .......|+.+|++... -..+.+.+ ....|.
T Consensus 116 ~a~~ipGA~e~L~~L~~~G---~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~--~d~lllr~------------~~~~K~ 178 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKG---VKIFYVSNRSEKEKAATLKNLKRFGFPQAD--EEHLLLKK------------DKSSKE 178 (266)
T ss_pred CCCcCccHHHHHHHHHHCC---CeEEEEeCCCcchHHHHHHHHHHcCcCCCC--cceEEeCC------------CCCCcH
Confidence 5678899999999999999 99999999631 23444667777764310 00111111 112466
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc--CCchHHhhhhhhCCcccccc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG--SSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~--~~~~L~~~~~~~gi~~~p~~ 458 (499)
.+++.+.+. ...+++|||..+|+......+ .. . +...+.+....+|-+|+-|-
T Consensus 179 ~rr~~I~~~-----y~Ivl~vGD~~~Df~~~~~~~--~~-~~~r~~~v~~~~~~fG~~~i~lP 233 (266)
T TIGR01533 179 SRRQKVQKD-----YEIVLLFGDNLLDFDDFFYKD--KE-SQDRQALVLQNQEKFGKKFIILP 233 (266)
T ss_pred HHHHHHHhc-----CCEEEEECCCHHHhhhhhccC--cc-hHHHHHHHHHHHHHhCCCeEEec
Confidence 666665542 234679999999996543332 11 2 22346677789999988653
No 107
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.80 E-value=0.00023 Score=65.46 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=61.9
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEecc-CC-hHHHHHHHHc-----CCCCceEEEeec-eEeeCCeeeccccccCCChh
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYC-WC-GDLIRSAFAS-----GDLNAFRVHSNE-LVYEESISTGEIVNKLESPL 394 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g-~s-~~~I~~~L~~-----~gl~~~~I~aN~-l~~~~g~~tG~~~~~~~~g~ 394 (499)
+.||..++++.++++| +++.++|+- |. ....+..|.. ++++.-.++++. -.+.+ .++++..+ ...
T Consensus 28 ~~~~~~~a~~~l~~~G---~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~--~~~e~i~~--~~~ 100 (157)
T smart00775 28 THPGVAKLYRDIQNNG---YKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAA--LHREVISK--KPE 100 (157)
T ss_pred CCHHHHHHHHHHHHcC---CeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhh--hhcccccC--CHH
Confidence 3688899999999999 999999984 21 1123466655 345434555432 11100 12222211 122
Q ss_pred h-hHHHHHHHHhhcCCCCCceEE-EEcCCcccHHHHHhcCc
Q 010855 395 E-KLQAFNDILKDHSNDEQNLTV-YIGGSPGDLLCLLEADI 433 (499)
Q Consensus 395 ~-K~~~l~~~~~~~~~~~~~~vI-yiGDs~tDl~~l~~Adi 433 (499)
. |...++++....... ....+ .+||..+|..+-..+++
T Consensus 101 ~~K~~~l~~i~~~~~~~-~~~f~~~~gn~~~D~~~y~~~gi 140 (157)
T smart00775 101 VFKIACLRDIKSLFPPQ-GNPFYAGFGNRITDVISYSAVGI 140 (157)
T ss_pred HHHHHHHHHHHHhcCCC-CCCEEEEeCCCchhHHHHHHcCC
Confidence 2 777888877643211 12344 58999999999999986
No 108
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.80 E-value=0.00017 Score=63.65 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=67.5
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCC-------hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChh
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC-------GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPL 394 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s-------~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~ 394 (499)
.+.||+.++++.++++| ++++|+|.+.. ...++..++..++....++. ++.. ..
T Consensus 25 ~~~~~v~~~l~~L~~~g---~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----------~~~~------~K 85 (132)
T TIGR01662 25 ILYPEVPDALAELKEAG---YKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVLYA----------CPHC------RK 85 (132)
T ss_pred eeCCCHHHHHHHHHHCC---CEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEEEE----------CCCC------CC
Confidence 57899999999999999 99999998841 35678888887764222111 1101 11
Q ss_pred hhHHHHHHHHhhcC-CCCCceEEEEcC-CcccHHHHHhcCc-cEEE
Q 010855 395 EKLQAFNDILKDHS-NDEQNLTVYIGG-SPGDLLCLLEADI-GIVI 437 (499)
Q Consensus 395 ~K~~~l~~~~~~~~-~~~~~~vIyiGD-s~tDl~~l~~Adi-giv~ 437 (499)
-|...+..++...+ . .+.+++|||| +.+|+.+++.+++ .|.+
T Consensus 86 P~~~~~~~~~~~~~~~-~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 86 PKPGMFLEALKRFNEI-DPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred CChHHHHHHHHHcCCC-ChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 24556666666653 4 3578999999 7999999999997 4443
No 109
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.75 E-value=6.9e-05 Score=87.02 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=75.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCC---eeec-ccc--------
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEES---ISTG-EIV-------- 387 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g---~~tG-~~~-------- 387 (499)
.-++|++.++.++.|++.| +++.+++|- ...--..+.++.|+....-- .+..+|. ...+ ++.
T Consensus 545 ~Dppr~~v~~aI~~l~~AG---I~v~MiTGD-~~~TA~aIa~~~Gi~~~~~~--~~vi~G~el~~l~~~el~~~~~~~~V 618 (917)
T COG0474 545 EDPPREDVKEAIEELREAG---IKVWMITGD-HVETAIAIAKECGIEAEAES--ALVIDGAELDALSDEELAELVEELSV 618 (917)
T ss_pred cCCCCccHHHHHHHHHHCC---CcEEEECCC-CHHHHHHHHHHcCCCCCCCc--eeEeehHHhhhcCHHHHHHHhhhCcE
Confidence 3489999999999999999 999999975 34455555666665322100 1122211 0111 110
Q ss_pred ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC
Q 010855 388 NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 388 ~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~ 439 (499)
.--+++..|.++++.+.+. +..|-++|||.||.+||+.||+||.++.
T Consensus 619 fARvsP~qK~~IV~~lq~~-----g~vVamtGDGvNDapALk~ADVGIamg~ 665 (917)
T COG0474 619 FARVSPEQKARIVEALQKS-----GHVVAMTGDGVNDAPALKAADVGIAMGG 665 (917)
T ss_pred EEEcCHHHHHHHHHHHHhC-----CCEEEEeCCCchhHHHHHhcCccEEecc
Confidence 1136789999999988863 3456699999999999999999999886
No 110
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.75 E-value=0.00096 Score=64.74 Aligned_cols=100 Identities=13% Similarity=0.108 Sum_probs=66.4
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc-eE-EEeeceEeeCCeeeccccccCCChhh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA-FR-VHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~-~~-I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
...+.+.||+.+++..++.+| +++.+.|++- ...++.+|+..|+.. +. +++. +.+..|+ +.+.
T Consensus 82 ~~~~~~~pGv~~~l~~L~~~~---i~~avaS~s~-~~~~~~~L~~~gl~~~f~~~v~~-----~dv~~~K---P~Pd--- 146 (221)
T COG0637 82 LEGLKPIPGVVELLEQLKARG---IPLAVASSSP-RRAAERVLARLGLLDYFDVIVTA-----DDVARGK---PAPD--- 146 (221)
T ss_pred hcCCCCCccHHHHHHHHHhcC---CcEEEecCCh-HHHHHHHHHHccChhhcchhccH-----HHHhcCC---CCCH---
Confidence 447899999999999999999 9999999884 668889998877531 11 1111 0111121 1111
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEE
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIV 436 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv 436 (499)
-++.. .+..+. .+.++|.|.||.+.+.+.+.|+.-++
T Consensus 147 --~yL~A-a~~Lgv-~P~~CvviEDs~~Gi~Aa~aAGm~vv 183 (221)
T COG0637 147 --IYLLA-AERLGV-DPEECVVVEDSPAGIQAAKAAGMRVV 183 (221)
T ss_pred --HHHHH-HHHcCC-ChHHeEEEecchhHHHHHHHCCCEEE
Confidence 12222 222222 25789999999999999999997444
No 111
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.68 E-value=0.00016 Score=85.43 Aligned_cols=112 Identities=11% Similarity=0.064 Sum_probs=77.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEEEee-----------ceEee---C----
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRVHSN-----------ELVYE---E---- 379 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I~aN-----------~l~~~---~---- 379 (499)
.-++||+..+.++.|++.| +++.+|||- +..-...+.++.|+- ...++.- .+.+. +
T Consensus 654 ~d~lr~~~~~~I~~l~~ag---i~v~miTGD-~~~TA~~iA~~~gii~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRAS---IRTVMITGD-NPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQIKFEVIDSIPFA 729 (1054)
T ss_pred ecCCCccHHHHHHHHHHCC---CeEEEECCC-CHHHHHHHHHHcCCCCCCceEEEeecccccCCCCceEEEEecCccccc
Confidence 4589999999999999999 999999986 355556666777762 1122110 11100 0
Q ss_pred ------------------------Ceeecccc--------------------ccCCChhhhHHHHHHHHhhcCCCCCceE
Q 010855 380 ------------------------SISTGEIV--------------------NKLESPLEKLQAFNDILKDHSNDEQNLT 415 (499)
Q Consensus 380 ------------------------g~~tG~~~--------------------~~~~~g~~K~~~l~~~~~~~~~~~~~~v 415 (499)
-..||... -.-+++.+|.++++.+.+. +..|
T Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq~~-----g~~V 804 (1054)
T TIGR01657 730 STQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQKL-----DYTV 804 (1054)
T ss_pred cccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHHhC-----CCeE
Confidence 02333210 0136788999999888752 3566
Q ss_pred EEEcCCcccHHHHHhcCccEEEcCC
Q 010855 416 VYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 416 IyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
.++|||.||.+||+.||+||+++..
T Consensus 805 ~m~GDG~ND~~ALK~AdVGIam~~~ 829 (1054)
T TIGR01657 805 GMCGDGANDCGALKQADVGISLSEA 829 (1054)
T ss_pred EEEeCChHHHHHHHhcCcceeeccc
Confidence 7999999999999999999999853
No 112
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.64 E-value=0.00018 Score=78.19 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
-++|++..+.++.+++.| +++.++|+. .......+.+..|+ + ....+.+|.+.+
T Consensus 346 d~lr~~~~~~i~~l~~~g---i~~~~ltGD-~~~~a~~ia~~lgi-----~-----------------~~~~p~~K~~~v 399 (499)
T TIGR01494 346 DPLRDDAKETISELREAG---IRVIMLTGD-NVLTAKAIAKELGI-----F-----------------ARVTPEEKAALV 399 (499)
T ss_pred CCCchhHHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCc-----e-----------------eccCHHHHHHHH
Confidence 489999999999999999 899999987 35555555555442 1 125677999999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG 438 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~ 438 (499)
+++... +..+.++|||.||.+++..||+||+++
T Consensus 400 ~~l~~~-----g~~v~~vGDg~nD~~al~~Advgia~~ 432 (499)
T TIGR01494 400 EALQKK-----GRVVAMTGDGVNDAPALKKADVGIAMG 432 (499)
T ss_pred HHHHHC-----CCEEEEECCChhhHHHHHhCCCccccc
Confidence 988642 357889999999999999999999997
No 113
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.63 E-value=0.00029 Score=64.97 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=70.9
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccC--------------ChHHHHHHHHcCCCCceEEE-eeceEeeCCeeecc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCW--------------CGDLIRSAFASGDLNAFRVH-SNELVYEESISTGE 385 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~--------------s~~~I~~~L~~~gl~~~~I~-aN~l~~~~g~~tG~ 385 (499)
+.+-||..++|+.|+++| ++++|+|..- ....+..+|.++|+....++ |-... .+.
T Consensus 28 ~~~~pgv~e~L~~L~~~g---~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~fd~ii~~~~~~------~~~ 98 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAG---YKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFP------DDN 98 (161)
T ss_pred eeECCCHHHHHHHHHHCC---CeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCceeEEEECCCCC------CCC
Confidence 578899999999999999 9999999741 13467788888887522232 20000 000
Q ss_pred ccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcC
Q 010855 386 IVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 386 ~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~ 439 (499)
.....-|...+..+.+..+.+ ..+++||||+.+|+.++..+++ +|.+..
T Consensus 99 ----~~~~KP~~~~~~~~~~~~~~~-~~e~l~IGD~~~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 99 ----CDCRKPKIKLLEPYLKKNLID-KARSYVIGDRETDMQLAENLGIRGIQYDE 148 (161)
T ss_pred ----CCCCCCCHHHHHHHHHHcCCC-HHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence 111122456666666665543 5789999999999999999998 455444
No 114
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=97.57 E-value=0.00026 Score=70.20 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHH
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLR 444 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~ 444 (499)
+.+|...++.+++..+.+ ..++++||||.||++|++.|++||++++. +.+.
T Consensus 197 ~~~K~~~l~~l~~~~gi~-~~e~i~~GD~~NDi~m~~~ag~~vamgna~~~lk 248 (272)
T PRK10530 197 GNSKGKRLTQWVEAQGWS-MKNVVAFGDNFNDISMLEAAGLGVAMGNADDAVK 248 (272)
T ss_pred CCChHHHHHHHHHHcCCC-HHHeEEeCCChhhHHHHHhcCceEEecCchHHHH
Confidence 346999999999887764 47899999999999999999999999864 4443
No 115
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=97.56 E-value=7.7e-05 Score=74.11 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=47.4
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGD 448 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~ 448 (499)
.+..|...|+.+++..+.+ ..+++++|||.||++|++.|++||+|++. +.+++.|.
T Consensus 193 ~gvsKg~al~~l~~~~gi~-~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A~ 249 (270)
T PRK10513 193 KRVNKGTGVKSLAEHLGIK-PEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSVKEVAQ 249 (270)
T ss_pred CCCChHHHHHHHHHHhCCC-HHHEEEECCchhhHHHHHhCCceEEecCccHHHHHhcC
Confidence 4567999999999888774 57899999999999999999999999974 56665553
No 116
>PRK10976 putative hydrolase; Provisional
Probab=97.54 E-value=8.9e-05 Score=73.57 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=48.1
Q ss_pred CChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhh
Q 010855 391 ESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGD 448 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~ 448 (499)
..+..|...|+.+++..+.+ ..+++++|||.||++|++.|++||+|++. +.+++.|.
T Consensus 186 ~~gvsKg~al~~l~~~lgi~-~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~vK~~A~ 243 (266)
T PRK10976 186 AGGVSKGHALEAVAKKLGYS-LKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRLKDLLP 243 (266)
T ss_pred cCCCChHHHHHHHHHHcCCC-HHHeEEEcCCcccHHHHHHcCCCeeecCCcHHHHHhCC
Confidence 34567999999999888774 57899999999999999999999999974 66776654
No 117
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.0004 Score=77.11 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecc-ccc-----------
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGE-IVN----------- 388 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~-~~~----------- 388 (499)
-+.|++..+-++.|++.| +++++|.+- +..--..+.++.| ++++.-.+.+-.+||. |+.
T Consensus 583 DPPR~ev~~ai~~c~~aG---IrV~mITGD-~~~TA~AI~r~iG-----i~~~~ed~~~~~~TG~efD~ls~~~~~~~~~ 653 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAG---IRVIMITGD-NKETAEAIAREIG-----IFSEDEDVSSMALTGSEFDDLSDEELDDAVR 653 (972)
T ss_pred CCCchhHHHHHHHHHHcC---CEEEEEcCC-CHHHHHHHHHHhC-----CCcCCccccccccchhhhhcCCHHHHHHHhh
Confidence 489999999999999999 999999986 3555556666655 3444333333445552 210
Q ss_pred -----cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEc-CCch
Q 010855 389 -----KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIG-SSSS 442 (499)
Q Consensus 389 -----~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~-~~~~ 442 (499)
.-+.+..|.++++.+.+. ++-+-.-|||+||-++|+.|||||+|+ .+..
T Consensus 654 ~~~vFaR~~P~HK~kIVeaLq~~-----geivAMTGDGVNDApALK~AdIGIAMG~~GTd 708 (972)
T KOG0202|consen 654 RVLVFARAEPQHKLKIVEALQSR-----GEVVAMTGDGVNDAPALKKADIGIAMGISGTD 708 (972)
T ss_pred cceEEEecCchhHHHHHHHHHhc-----CCEEEecCCCccchhhhhhcccceeecCCccH
Confidence 135677899999887753 233447999999999999999999999 4443
No 118
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.43 E-value=0.00087 Score=67.21 Aligned_cols=84 Identities=26% Similarity=0.277 Sum_probs=53.7
Q ss_pred HHHHHcCCCCceE--EEeeceEeeC-C--eeeccccccCCC---hhhhHHHHHHHHhhcCCC-CCceEEEEcCCcccHHH
Q 010855 357 RSAFASGDLNAFR--VHSNELVYEE-S--ISTGEIVNKLES---PLEKLQAFNDILKDHSND-EQNLTVYIGGSPGDLLC 427 (499)
Q Consensus 357 ~~~L~~~gl~~~~--I~aN~l~~~~-g--~~tG~~~~~~~~---g~~K~~~l~~~~~~~~~~-~~~~vIyiGDs~tDl~~ 427 (499)
+..+++.|+...+ -+.+-+.|.+ + ..||-..+.... +.+|.+.++.+++.+... ..-.+|.+|||.||++|
T Consensus 162 ~~~~~~~g~~~~~GgRf~H~l~~~~~~~~~~~~~~~~~~~~~~~~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~m 241 (302)
T PRK12702 162 REAFAQQEANLTQHLLRLHQLHFSDLPQWYLTGWMQPTLAAEPNSLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAF 241 (302)
T ss_pred HHHHHHcCCeEEecCceEEecccccccccccccccccccccccCCCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHH
Confidence 6667766653211 1222222322 2 246655554545 778998888777654321 23478899999999999
Q ss_pred HHhcCccEEEcCC
Q 010855 428 LLEADIGIVIGSS 440 (499)
Q Consensus 428 l~~Adigiv~~~~ 440 (499)
|..+|++|+|...
T Consensus 242 Le~~D~~vvi~~~ 254 (302)
T PRK12702 242 LRWSEQKVVLPSP 254 (302)
T ss_pred HHhCCeeEEecCC
Confidence 9999999999653
No 119
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=97.39 E-value=0.00021 Score=68.96 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=46.9
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGDH 449 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~~ 449 (499)
.+.+|...++.+++..+.+ ..++++||||.||++|++.+++||+|++. +.+...|..
T Consensus 183 ~~vsK~~ai~~l~~~~~i~-~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~~k~~a~~ 240 (254)
T PF08282_consen 183 KGVSKGSAIKYLLEYLGIS-PEDIIAFGDSENDIEMLELAGYSVAMGNATPELKKAADY 240 (254)
T ss_dssp TTSSHHHHHHHHHHHHTTS-GGGEEEEESSGGGHHHHHHSSEEEEETTS-HHHHHHSSE
T ss_pred CCCCHHHHHHHHhhhcccc-cceeEEeecccccHhHHhhcCeEEEEcCCCHHHHHhCCE
Confidence 4567999999999877664 47899999999999999999999999975 566655543
No 120
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=97.38 E-value=0.00016 Score=72.12 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=56.1
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhhhhCCccccccchHHHHHHHhhc
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGDHFGVSFVPLFSSLVERQKELVD 470 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~ 470 (499)
.+..|...|+.+++..+.+ ..+++++|||.||++|++.|++||+|++. +.+++.|...-+.--.-..++...-+.|..
T Consensus 185 ~g~sKg~al~~l~~~~gi~-~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~vK~~A~~~~v~~~n~edGva~~l~~~~~ 263 (272)
T PRK15126 185 VGCNKGAALAVLSQHLGLS-LADCMAFGDAMNDREMLGSVGRGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWLD 263 (272)
T ss_pred CCCChHHHHHHHHHHhCCC-HHHeEEecCCHHHHHHHHHcCCceeccCChHHHHHhCCCCeecCCCcchHHHHHHHHHhc
Confidence 3457999999999988774 47899999999999999999999999975 567665542111001123455544455554
Q ss_pred CC
Q 010855 471 GS 472 (499)
Q Consensus 471 ~~ 472 (499)
++
T Consensus 264 ~~ 265 (272)
T PRK15126 264 YP 265 (272)
T ss_pred CC
Confidence 43
No 121
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00048 Score=72.71 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=66.3
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHH-HcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAF-ASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L-~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
.+.||.+|.|..+|+-| ++++.+.+- ..+-...+ .+.|+ +..++ .+++.+|.+++
T Consensus 447 ivK~Gi~ERf~elR~Mg---IkTvM~TGD--N~~TAa~IA~EAGV--DdfiA-----------------eatPEdK~~~I 502 (681)
T COG2216 447 IVKPGIKERFAELRKMG---IKTVMITGD--NPLTAAAIAAEAGV--DDFIA-----------------EATPEDKLALI 502 (681)
T ss_pred hcchhHHHHHHHHHhcC---CeEEEEeCC--CHHHHHHHHHHhCc--hhhhh-----------------cCChHHHHHHH
Confidence 57788888888888888 888888764 23333333 33343 22222 36778999999
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCch
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSS 442 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~ 442 (499)
++.... +..+-..|||.||-|+|.+||+|++|..+..
T Consensus 503 ~~eQ~~-----grlVAMtGDGTNDAPALAqAdVg~AMNsGTq 539 (681)
T COG2216 503 RQEQAE-----GRLVAMTGDGTNDAPALAQADVGVAMNSGTQ 539 (681)
T ss_pred HHHHhc-----CcEEEEcCCCCCcchhhhhcchhhhhccccH
Confidence 988753 2344589999999999999999999988753
No 122
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.34 E-value=0.00033 Score=69.42 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=48.1
Q ss_pred CChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhh
Q 010855 391 ESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGD 448 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~ 448 (499)
..+.+|...++.+.+..+.+ ..+++++|||.||++|+..|++||+|++. +.+.+++.
T Consensus 185 ~~g~~K~~al~~l~~~lgi~-~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~k~~A~ 242 (264)
T COG0561 185 PKGVSKGYALQRLAKLLGIK-LEEVIAFGDSTNDIEMLEVAGLGVAMGNADEELKELAD 242 (264)
T ss_pred cCCCchHHHHHHHHHHhCCC-HHHeEEeCCccccHHHHHhcCeeeeccCCCHHHHhhCC
Confidence 34668999999999987774 46899999999999999999999999975 56666655
No 123
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.32 E-value=0.00022 Score=68.70 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhh
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLG 447 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~ 447 (499)
+..|...++.+++..+.+ ..++++||||.||++|++.+++|++|++. +.+++.+
T Consensus 147 ~~~K~~~i~~l~~~~~i~-~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~~k~~A 201 (225)
T TIGR01482 147 GVNKGVAVKKLKEKLGIK-PGETLVCGDSENDIDLFEVPGFGVAVANAQPELKEWA 201 (225)
T ss_pred CCCHHHHHHHHHHHhCCC-HHHEEEECCCHhhHHHHHhcCceEEcCChhHHHHHhc
Confidence 457999999998877764 47899999999999999999999999974 5565544
No 124
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.28 E-value=0.0012 Score=78.42 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=42.3
Q ss_pred CChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCc-hHHhhhhhhCCc
Q 010855 391 ESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSS-SLRRLGDHFGVS 453 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~-~L~~~~~~~gi~ 453 (499)
+++..|.++++-+.+.. +..+.+||||.||.+|++.|||||.+.... .-+..+..+.|+
T Consensus 854 ~sP~QKa~IV~~vk~~~----~~vtlaIGDGaNDv~mIq~AdVGIGIsG~EG~qA~~aSDfaI~ 913 (1178)
T PLN03190 854 VAPLQKAGIVALVKNRT----SDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMG 913 (1178)
T ss_pred CCHHHHHHHHHHHHhcC----CcEEEEECCCcchHHHHHhcCeeeeecCchhHHHHHhhccchh
Confidence 57789998888776431 245779999999999999999999876642 333334444444
No 125
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.26 E-value=0.00027 Score=67.94 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=45.3
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLG 447 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~ 447 (499)
.+.+|...++.+++..+.+ ..++++||||.||++|++.+++|++|++. +.+++.|
T Consensus 144 ~~~~K~~~i~~l~~~~~i~-~~~~i~iGDs~ND~~ml~~ag~~vam~na~~~~k~~A 199 (215)
T TIGR01487 144 KGVDKGVGVEKLKELLGIK-PEEVAAIGDSENDIDLFRVVGFKVAVANADDQLKEIA 199 (215)
T ss_pred CCCChHHHHHHHHHHhCCC-HHHEEEECCCHHHHHHHHhCCCeEEcCCccHHHHHhC
Confidence 4567999999998877664 46799999999999999999999999975 5666554
No 126
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.26 E-value=0.00026 Score=64.21 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=59.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc---eEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA---FRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~---~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
.+.+|||+.+|+++|+ ++ +++.|+|.+ +..+++.+++..++.. ..|++. +... ..|
T Consensus 43 ~v~l~pG~~e~L~~L~-~~---~~l~I~Ts~-~~~~~~~il~~l~~~~~~f~~i~~~-----~d~~-----------~~K 101 (148)
T smart00577 43 YVKKRPGVDEFLKRAS-EL---FELVVFTAG-LRMYADPVLDLLDPKKYFGYRRLFR-----DECV-----------FVK 101 (148)
T ss_pred EEEECCCHHHHHHHHH-hc---cEEEEEeCC-cHHHHHHHHHHhCcCCCEeeeEEEC-----cccc-----------ccC
Confidence 4689999999999998 56 899999999 4788999998766521 112221 1110 011
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
..+++.+ ...+. ...++|+|||+.+|+.+...+++
T Consensus 102 P~~~k~l-~~l~~-~p~~~i~i~Ds~~~~~aa~~ngI 136 (148)
T smart00577 102 GKYVKDL-SLLGR-DLSNVIIIDDSPDSWPFHPENLI 136 (148)
T ss_pred CeEeecH-HHcCC-ChhcEEEEECCHHHhhcCccCEE
Confidence 1122211 11222 25789999999999998877763
No 127
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.24 E-value=0.00028 Score=70.50 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=41.1
Q ss_pred ChhhhHHHHHHHHhhcCC---CCCceEEEEcCCcccHHHHHhcCccEEEcC
Q 010855 392 SPLEKLQAFNDILKDHSN---DEQNLTVYIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~---~~~~~vIyiGDs~tDl~~l~~Adigiv~~~ 439 (499)
.+.+|...++.+++..+. + ..+++++|||.||++||+.|++||+|++
T Consensus 184 ~g~sKg~al~~l~~~lgi~~~~-~~~viafGDs~NDi~Ml~~ag~gvAM~~ 233 (271)
T PRK03669 184 ASAGKDQAANWLIATYQQLSGT-RPTTLGLGDGPNDAPLLDVMDYAVVVKG 233 (271)
T ss_pred CCCCHHHHHHHHHHHHHhhcCC-CceEEEEcCCHHHHHHHHhCCEEEEecC
Confidence 356799999999887765 3 4789999999999999999999999984
No 128
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.24 E-value=0.0011 Score=78.43 Aligned_cols=112 Identities=21% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC--ceEE---Eeec---------------------
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN--AFRV---HSNE--------------------- 374 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~--~~~I---~aN~--------------------- 374 (499)
-++|||.++.++.|++.| +++.+++|- ..+-...+..+.|+- ...+ -.+.
T Consensus 630 D~lq~~v~etI~~L~~AG---Ikv~mlTGD-~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~ 705 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAG---IKIWVLTGD-KVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEE 705 (1057)
T ss_pred hhhhhccHHHHHHHHHCC---CeEEEEcCC-cHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHh
Confidence 489999999999999999 999999975 344444444444541 1111 1110
Q ss_pred -----------eEeeCCe----eecc----c----------cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccH
Q 010855 375 -----------LVYEESI----STGE----I----------VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDL 425 (499)
Q Consensus 375 -----------l~~~~g~----~tG~----~----------~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl 425 (499)
+..++.. .... + ..--+++.+|.++++.+.+.. +..+.++|||.||.
T Consensus 706 ~~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~----~~~vl~iGDG~ND~ 781 (1057)
T TIGR01652 706 FNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKST----GKTTLAIGDGANDV 781 (1057)
T ss_pred hhhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcC----CCeEEEEeCCCccH
Confidence 1111110 0000 0 111356789999988777531 24677999999999
Q ss_pred HHHHhcCccEEEcCC
Q 010855 426 LCLLEADIGIVIGSS 440 (499)
Q Consensus 426 ~~l~~Adigiv~~~~ 440 (499)
+|++.||+||.+...
T Consensus 782 ~mlk~AdVGIgi~g~ 796 (1057)
T TIGR01652 782 SMIQEADVGVGISGK 796 (1057)
T ss_pred HHHhhcCeeeEecCh
Confidence 999999999987553
No 129
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=97.22 E-value=0.00032 Score=67.81 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=45.2
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLG 447 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~ 447 (499)
.+..|...++.+++..+.+ ..++++||||.||++|+..+++||+|++. +.+++.|
T Consensus 154 ~~~~Kg~al~~l~~~~~i~-~~~~i~~GD~~NDi~m~~~ag~~vam~Na~~~vk~~a 209 (230)
T PRK01158 154 PGVNKGTGLKKLAELMGID-PEEVAAIGDSENDLEMFEVAGFGVAVANADEELKEAA 209 (230)
T ss_pred CCCChHHHHHHHHHHhCCC-HHHEEEECCchhhHHHHHhcCceEEecCccHHHHHhc
Confidence 3457999999998877663 57899999999999999999999999874 5565544
No 130
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.20 E-value=0.002 Score=59.73 Aligned_cols=92 Identities=7% Similarity=0.038 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCCh------------HHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccC
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWCG------------DLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKL 390 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~------------~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~ 390 (499)
+-||+.++|+.++++| +++.|+|.+- . ..++.+|+.+|+....+++.+ ++
T Consensus 43 ~~pgv~e~L~~Lk~~G---~~l~I~TN~~-~~~~~~~~~~~~~~~i~~~l~~~gl~~~~ii~~~----~~---------- 104 (166)
T TIGR01664 43 LYPEIPAKLQELDDEG---YKIVIFTNQS-GIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATH----AG---------- 104 (166)
T ss_pred ecCCHHHHHHHHHHCC---CEEEEEeCCc-ccccCcccHHHHHHHHHHHHHHcCCCEEEEEecC----CC----------
Confidence 5689999999999999 9999999863 2 246778888886433333221 00
Q ss_pred CChhhhHHHHHHHHhhcC--CCCCceEEEEcCCc--------ccHHHHHhcCc
Q 010855 391 ESPLEKLQAFNDILKDHS--NDEQNLTVYIGGSP--------GDLLCLLEADI 433 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~--~~~~~~vIyiGDs~--------tDl~~l~~Adi 433 (499)
....-+...+.......+ . ...+++||||+. +|+.+++.|++
T Consensus 105 ~~~KP~p~~~~~~~~~~~~~~-~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi 156 (166)
T TIGR01664 105 LYRKPMTGMWEYLQSQYNSPI-KMTRSFYVGDAAGRKLDFSDADIKFAKNLGL 156 (166)
T ss_pred CCCCCccHHHHHHHHHcCCCC-CchhcEEEECCCCCCCCCchhHHHHHHHCCC
Confidence 011112345566665554 3 246899999996 69999999985
No 131
>PRK06769 hypothetical protein; Validated
Probab=97.19 E-value=0.0015 Score=60.81 Aligned_cols=102 Identities=9% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChH--------HHHHHHHcCCCCceEEE-eeceEeeCCeeeccccccCC
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGD--------LIRSAFASGDLNAFRVH-SNELVYEESISTGEIVNKLE 391 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~--------~I~~~L~~~gl~~~~I~-aN~l~~~~g~~tG~~~~~~~ 391 (499)
+.+.||+.++++.|+++| +++.|+|.+- .. -+...++..|+. .++ +-. .++. ...
T Consensus 27 ~~~~pgv~e~L~~Lk~~G---~~l~I~Tn~~-~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~-------~~~~---~~~ 90 (173)
T PRK06769 27 FTLFPFTKASLQKLKANH---IKIFSFTNQP-GIADGIATIADFVQELKGFGFD--DIYLCPH-------KHGD---GCE 90 (173)
T ss_pred eEECCCHHHHHHHHHHCC---CEEEEEECCc-hhcCCcCCHHHHHHHHHhCCcC--EEEECcC-------CCCC---CCC
Confidence 457899999999999999 9999999762 21 122235554542 221 110 0000 000
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcC
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~ 439 (499)
...-+...+.+.++..+. .+.+++||||+.+|+.++..|++ .|.+..
T Consensus 91 ~~KP~p~~~~~~~~~l~~-~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 91 CRKPSTGMLLQAAEKHGL-DLTQCAVIGDRWTDIVAAAKVNATTILVRT 138 (173)
T ss_pred CCCCCHHHHHHHHHHcCC-CHHHeEEEcCCHHHHHHHHHCCCeEEEEec
Confidence 111234556666665554 35789999999999999999997 455543
No 132
>PLN02887 hydrolase family protein
Probab=97.18 E-value=0.00037 Score=76.72 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=47.4
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGD 448 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~ 448 (499)
.+..|...|+.+++..+.+ ..++++||||.||++|++.|++||+|++. +.+++.|.
T Consensus 504 ~gvSKG~ALk~L~e~lGI~-~eeviAFGDs~NDIeMLe~AG~gVAMgNA~eeVK~~Ad 560 (580)
T PLN02887 504 PGTSKGNGVKMLLNHLGVS-PDEIMAIGDGENDIEMLQLASLGVALSNGAEKTKAVAD 560 (580)
T ss_pred CCCCHHHHHHHHHHHcCCC-HHHEEEEecchhhHHHHHHCCCEEEeCCCCHHHHHhCC
Confidence 4567999999999988774 57899999999999999999999999975 56665543
No 133
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.15 E-value=0.035 Score=53.25 Aligned_cols=99 Identities=14% Similarity=0.043 Sum_probs=67.8
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccccCCChhhh-
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVNKLESPLEK- 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K- 396 (499)
.++..|++.++++.++.+ .+++|+|.|. .......|++.|+.. ..|++.+- .| ..|
T Consensus 97 ~~~~~~~~~~~L~~l~~~----~~l~ilTNg~-~~~~~~~l~~~gl~~~Fd~v~~s~~-------~g---------~~KP 155 (229)
T COG1011 97 LLPDYPEALEALKELGKK----YKLGILTNGA-RPHQERKLRQLGLLDYFDAVFISED-------VG---------VAKP 155 (229)
T ss_pred hCccChhHHHHHHHHHhh----ccEEEEeCCC-hHHHHHHHHHcCChhhhheEEEecc-------cc---------cCCC
Confidence 378888999999988765 6899999984 667888888877532 23332210 11 122
Q ss_pred -HHHHHHHHhhcCCCCCceEEEEcCCcccH-HHHHhcCc-cEEEcCC
Q 010855 397 -LQAFNDILKDHSNDEQNLTVYIGGSPGDL-LCLLEADI-GIVIGSS 440 (499)
Q Consensus 397 -~~~l~~~~~~~~~~~~~~vIyiGDs~tDl-~~l~~Adi-giv~~~~ 440 (499)
.++++..+...+.+ +.++++||||.... ..+..+|. +|.+...
T Consensus 156 ~~~~f~~~~~~~g~~-p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~ 201 (229)
T COG1011 156 DPEIFEYALEKLGVP-PEEALFVGDSLENDILGARALGMKTVWINRG 201 (229)
T ss_pred CcHHHHHHHHHcCCC-cceEEEECCChhhhhHHHHhcCcEEEEECCC
Confidence 24556666665553 57899999987655 99999997 6777654
No 134
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.14 E-value=0.0028 Score=59.20 Aligned_cols=111 Identities=5% Similarity=-0.007 Sum_probs=67.0
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCce-EEEeeceEeeCCeeeccccccCCChhhh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAF-RVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~-~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
...+.+.||+.++++.|+++| +++.|+|.+-....++.++...++... .-+.+.-.| +.+.++.- ....|
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G---~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~F-d~iv~~~~-----~~~~k 111 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAG---TYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLF-DDRIEIYK-----PNKAK 111 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCC---CEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhc-eeeeeccC-----CchHH
Confidence 346789999999999999999 999999976235678888887765300 000000001 11111110 01122
Q ss_pred H--HHHHHHHhhc--CCCCCceEEEEcCCcccHHHHHhcCccEEEc
Q 010855 397 L--QAFNDILKDH--SNDEQNLTVYIGGSPGDLLCLLEADIGIVIG 438 (499)
Q Consensus 397 ~--~~l~~~~~~~--~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~ 438 (499)
. ..++.+.... +. .+.+++||||+..|+.++..+++-++..
T Consensus 112 p~~~i~~~~~~~~~~gl-~p~e~l~VgDs~~di~aA~~aGi~~i~v 156 (174)
T TIGR01685 112 QLEMILQKVNKVDPSVL-KPAQILFFDDRTDNVREVWGYGVTSCYC 156 (174)
T ss_pred HHHHHHHHhhhcccCCC-CHHHeEEEcChhHhHHHHHHhCCEEEEc
Confidence 1 1233332211 12 3578999999999999999999854443
No 135
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.11 E-value=0.0029 Score=58.75 Aligned_cols=95 Identities=9% Similarity=0.004 Sum_probs=65.5
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
...+.||+.++++.|+++| .+++|+|.+-....+..+++..++ ..+. +. ..-+...
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g---~~l~I~Sn~~~~~~~~~~~~~~gl---~~~~-----------~~-------~KP~p~~ 96 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAG---RKLLIVSNNAGEQRAKAVEKALGI---PVLP-----------HA-------VKPPGCA 96 (170)
T ss_pred CCCcChhHHHHHHHHHHcC---CEEEEEeCCchHHHHHHHHHHcCC---EEEc-----------CC-------CCCChHH
Confidence 3467899999999999999 999999987214566666665543 1110 10 1123345
Q ss_pred HHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
+...+...+.+ ..++++|||+. +|+.++..+++ .|.+..
T Consensus 97 ~~~~l~~~~~~-~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 97 FRRAHPEMGLT-SEQVAVVGDRLFTDVMGGNRNGSYTILVEP 137 (170)
T ss_pred HHHHHHHcCCC-HHHEEEECCcchHHHHHHHHcCCeEEEEcc
Confidence 56666555543 57899999998 79999999998 555544
No 136
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.03 E-value=0.00073 Score=65.09 Aligned_cols=44 Identities=30% Similarity=0.251 Sum_probs=38.2
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEE
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVI 437 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~ 437 (499)
+..|...++.+++..+.+ ..++++||||.||++|+..|++||++
T Consensus 177 ~~~Kg~al~~l~~~lgi~-~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 177 SSSKGKAANWLKATYNQP-DVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred CCCHHHHHHHHHHHhCCC-CCcEEEECCCHHHHHHHHhCCceEEe
Confidence 445888999988877764 57899999999999999999999986
No 137
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.00 E-value=0.00069 Score=66.07 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=46.8
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGDH 449 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~~ 449 (499)
.+.+|...++.+++..+.+ ...++++|||.||++|+..+++||+|++. +.+++.+..
T Consensus 156 ~~~~K~~al~~l~~~~g~~-~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~k~~a~~ 213 (236)
T TIGR02471 156 LRASKGLALRYLSYRWGLP-LEQILVAGDSGNDEEMLRGLTLGVVVGNHDPELEGLRHQ 213 (236)
T ss_pred CCCChHHHHHHHHHHhCCC-HHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHHHHhhcC
Confidence 4567999999998877653 46899999999999999999999999874 677766553
No 138
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.96 E-value=0.0056 Score=56.04 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=63.0
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEecc--CChHHHHHHHHcC-----CCCceEEEeece-EeeCCeeeccccccCCCh
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYC--WCGDLIRSAFASG-----DLNAFRVHSNEL-VYEESISTGEIVNKLESP 393 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g--~s~~~I~~~L~~~-----gl~~~~I~aN~l-~~~~g~~tG~~~~~~~~g 393 (499)
..++|+.++++.+.++| ..+.=+|+= |-....+..|..+ +++.=.++.+.- .+. -++.+...+ ..-
T Consensus 27 ~~h~g~~~l~~~i~~~G---Y~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~--al~rEvi~~-~p~ 100 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNG---YKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFS--ALHREVISK-DPE 100 (157)
T ss_pred hhhhcHHHHHHHHHHCC---eEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhh--hhhcccccc-ChH
Confidence 45678888888888888 888888872 1134566666654 455444554421 110 011122211 112
Q ss_pred hhhHHHHHHHHhhcCCCCCceEE-EEcCCcccHHHHHhcCc
Q 010855 394 LEKLQAFNDILKDHSNDEQNLTV-YIGGSPGDLLCLLEADI 433 (499)
Q Consensus 394 ~~K~~~l~~~~~~~~~~~~~~vI-yiGDs~tDl~~l~~Adi 433 (499)
.-|...|+.++...... ....+ .+|...+|..+-..+++
T Consensus 101 ~fK~~~L~~l~~~f~~~-~~pf~agfGN~~tDv~aY~~vGi 140 (157)
T PF08235_consen 101 EFKIACLRDLRALFPPD-GNPFYAGFGNRSTDVIAYKAVGI 140 (157)
T ss_pred HHHHHHHHHHHHhcCCC-CCeEEEecCCcHHHHHHHHHcCC
Confidence 45888898888653211 12233 69999999999999987
No 139
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.91 E-value=0.00093 Score=66.03 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHhhcCCC-CCceEEEEcCCcccHHHHHhcCccEEEcCCc
Q 010855 393 PLEKLQAFNDILKDHSND-EQNLTVYIGGSPGDLLCLLEADIGIVIGSSS 441 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~-~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~ 441 (499)
+..|...++.+++..+.+ ...+++++|||.||++|+..|++||+|++..
T Consensus 174 ~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~ 223 (256)
T TIGR01486 174 GSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPN 223 (256)
T ss_pred CCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCC
Confidence 457888888888776542 1468999999999999999999999998753
No 140
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.84 E-value=0.0031 Score=57.05 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=65.6
Q ss_pred HHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCC
Q 010855 331 FQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSND 410 (499)
Q Consensus 331 l~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~ 410 (499)
++.+.+.| +.+.|+|+== ..+++...+..|+..+ +.| ..+|...+.++++..+.+
T Consensus 44 ik~l~~~G---i~vAIITGr~-s~ive~Ra~~LGI~~~-------------~qG--------~~dK~~a~~~L~~~~~l~ 98 (170)
T COG1778 44 IKLLLKSG---IKVAIITGRD-SPIVEKRAKDLGIKHL-------------YQG--------ISDKLAAFEELLKKLNLD 98 (170)
T ss_pred HHHHHHcC---CeEEEEeCCC-CHHHHHHHHHcCCcee-------------eec--------hHhHHHHHHHHHHHhCCC
Confidence 34455668 9999999864 4578888888775322 222 257999999999988874
Q ss_pred CCceEEEEcCCcccHHHHHhcCccEEEcCC
Q 010855 411 EQNLTVYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 411 ~~~~vIyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
.+++.||||-.+|+++++.+++++++.+.
T Consensus 99 -~e~~ayiGDD~~Dlpvm~~vGls~a~~dA 127 (170)
T COG1778 99 -PEEVAYVGDDLVDLPVMEKVGLSVAVADA 127 (170)
T ss_pred -HHHhhhhcCccccHHHHHHcCCccccccc
Confidence 68899999999999999999988887764
No 141
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=96.80 E-value=0.0014 Score=64.60 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=44.3
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRL 446 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~ 446 (499)
.+..|...++.+++..+.+ ..++++||||.||++|+..+++|+++++. +.+++.
T Consensus 185 ~~~~K~~~i~~~~~~~~~~-~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~~k~~ 239 (256)
T TIGR00099 185 KGVSKGSALQSLAEALGIS-LEDVIAFGDGMNDIEMLEAAGYGVAMGNADEELKAL 239 (256)
T ss_pred CCCChHHHHHHHHHHcCCC-HHHEEEeCCcHHhHHHHHhCCceeEecCchHHHHHh
Confidence 4567999999999877663 47899999999999999999999999764 445443
No 142
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=96.75 E-value=0.0045 Score=54.70 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=62.0
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEE--EeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRV--HSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I--~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
.+.||+.++++.++++| +++.|+|.+....++..+++..+. ...+ +...+ +.+.++. ...|.+.
T Consensus 29 ~~~~gv~e~L~~Lk~~g---~~l~i~Sn~~~~~~~~~~l~~~~~-~~~i~~l~~~f---~~~~~~~-------~~pkp~~ 94 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNG---FLLALASYNDDPHVAYELLKIFED-FGIIFPLAEYF---DPLTIGY-------WLPKSPR 94 (128)
T ss_pred HHHHHHHHHHHHHHHCC---eEEEEEeCCCCHHHHHHHHHhccc-cccchhhHhhh---hhhhhcC-------CCcHHHH
Confidence 68899999999999999 999999998667788888876540 0000 01100 1111111 0135666
Q ss_pred HHHHHhhcC--CCCCceEEEEcCCcccHHHHH
Q 010855 400 FNDILKDHS--NDEQNLTVYIGGSPGDLLCLL 429 (499)
Q Consensus 400 l~~~~~~~~--~~~~~~vIyiGDs~tDl~~l~ 429 (499)
+...+...+ . .+.+++||||+..|+....
T Consensus 95 ~~~a~~~lg~~~-~p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 95 LVEIALKLNGVL-KPKSILFVDDRPDNNEEVD 125 (128)
T ss_pred HHHHHHHhcCCC-CcceEEEECCCHhHHHHHH
Confidence 776666665 4 3578999999999987664
No 143
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=96.73 E-value=0.0016 Score=63.34 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHHhhcCCC-CCceEEEEcCCcccHHHHHhcCccEEEc
Q 010855 393 PLEKLQAFNDILKDHSND-EQNLTVYIGGSPGDLLCLLEADIGIVIG 438 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~-~~~~vIyiGDs~tDl~~l~~Adigiv~~ 438 (499)
+.+|...++.+++..+.. ....++++|||.||++|++.||+||+++
T Consensus 179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v~ 225 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLVG 225 (225)
T ss_pred CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEecC
Confidence 668999999888765431 2347999999999999999999999975
No 144
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.71 E-value=0.0019 Score=64.47 Aligned_cols=49 Identities=27% Similarity=0.276 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhhcCCCCC-ceEEEEcCCcccHHHHHhcCccEEEcCC-chHH
Q 010855 395 EKLQAFNDILKDHSNDEQ-NLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLR 444 (499)
Q Consensus 395 ~K~~~l~~~~~~~~~~~~-~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~ 444 (499)
.|...++.+.+..+.+ . .++++||||.||++|+..|++|++|++. +.+.
T Consensus 190 ~Kg~al~~l~~~~~i~-~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~k 240 (273)
T PRK00192 190 DKGKAVRWLKELYRRQ-DGVETIALGDSPNDLPMLEAADIAVVVPGPDGPNP 240 (273)
T ss_pred CHHHHHHHHHHHHhcc-CCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCCc
Confidence 6888898888776653 5 7899999999999999999999999974 3443
No 145
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.68 E-value=0.042 Score=53.72 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=109.0
Q ss_pred EEEEeCCccccc--ccchHHHHHHHHHhcCCCCCCCccchhhcccccccc-ccHHHHHHHHHHHHHHHHhhhcCcchhhc
Q 010855 200 TLFCDFDWTCTA--FDSSSILAELAIVTAQKSDPDQSEGKLTWMSSADLR-NTWDVLSTKYTEEYEQCIESIMSSEAVAE 276 (499)
Q Consensus 200 ~ii~DFD~TIT~--~DT~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~y~~~~~~~~~~~~p~~~~~~ 276 (499)
+|+||++|||.. ........+++-.. .++ .. +.+...+..+|.+.... .|-...
T Consensus 9 avtfD~~~tLl~~~~~~~~~y~~i~~~~-------------------gl~~~~-~~~~~~~~~~~~~~~~~-~p~~~~-- 65 (237)
T KOG3085|consen 9 AVTFDAGGTLLATLPPVMEVYCEIAEAY-------------------GLEYDD-SLIETIFRKDFKKMSEK-GPFFGL-- 65 (237)
T ss_pred EEEEeCCCceeecCCccHHHHHHHHHHh-------------------CCCCCH-HHHhHhhhHHHHhhccc-CCcccc--
Confidence 999999999974 44555555544322 133 22 45555555555432211 122111
Q ss_pred CCHHHHHHHHhhhHHHHHHHHHHHHhhhhccCCCHHHHHH--Hh---------hcCCCChhHHHHHHHHHHcCCCcccEE
Q 010855 277 FEYEGLCEALKQLAYFEKNENSRVVQSGVLKGLNLEDIKW--AS---------QHLIFQDGCRRFFQNTIKSTNFKTDVH 345 (499)
Q Consensus 277 ~~~~~~~~~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~--~~---------~~i~lr~G~~efl~~l~~~g~~~~~~~ 345 (499)
+.+.+ ..++||...+..... .++...++... ++ +...+-+|+.++++++|+.| ..+.
T Consensus 66 --~~g~l----~~~~ww~~lv~~~f~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g---~~l~ 133 (237)
T KOG3085|consen 66 --YSGEL----TLSQWWPKLVESTFG---KAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKG---TILG 133 (237)
T ss_pred --cCCcc----cHHHHHHHHHHHHhc---cccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCC---eEEE
Confidence 11111 245677655554432 22333222221 11 23456778889999999999 7888
Q ss_pred EEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhh--HHHHHHHHhhcCCCCCceEEEEcCC-c
Q 010855 346 VLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEK--LQAFNDILKDHSNDEQNLTVYIGGS-P 422 (499)
Q Consensus 346 IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K--~~~l~~~~~~~~~~~~~~vIyiGDs-~ 422 (499)
|+|-. ++-.+.++...++.. .||--+. .+.-|..| .+++...+...+. .+..+++|||+ .
T Consensus 134 iisN~--d~r~~~~l~~~~l~~--------~fD~vv~------S~e~g~~KPDp~If~~al~~l~v-~Pee~vhIgD~l~ 196 (237)
T KOG3085|consen 134 IISNF--DDRLRLLLLPLGLSA--------YFDFVVE------SCEVGLEKPDPRIFQLALERLGV-KPEECVHIGDLLE 196 (237)
T ss_pred EecCC--cHHHHHHhhccCHHH--------hhhhhhh------hhhhccCCCChHHHHHHHHHhCC-ChHHeEEecCccc
Confidence 88843 556677766665420 0110011 11122233 2344444544444 36789999997 5
Q ss_pred ccHHHHHhcCc-cEEEcCC-chHHhhhhhhCC
Q 010855 423 GDLLCLLEADI-GIVIGSS-SSLRRLGDHFGV 452 (499)
Q Consensus 423 tDl~~l~~Adi-giv~~~~-~~L~~~~~~~gi 452 (499)
||+..++.+|. ++++.+. ..+.+.-...|+
T Consensus 197 nD~~gA~~~G~~ailv~~~~~~~~~~~~~~~~ 228 (237)
T KOG3085|consen 197 NDYEGARNLGWHAILVDNSITALKELEYKLGI 228 (237)
T ss_pred cccHhHHHcCCEEEEEccccchhhhhhhcccc
Confidence 88999999996 8888764 344443344443
No 146
>PLN02382 probable sucrose-phosphatase
Probab=96.63 E-value=0.0024 Score=67.86 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=44.9
Q ss_pred ChhhhHHHHHHHHhhc---CCCCCceEEEEcCCcccHHHHHhcC-ccEEEcCC-chHHhhh
Q 010855 392 SPLEKLQAFNDILKDH---SNDEQNLTVYIGGSPGDLLCLLEAD-IGIVIGSS-SSLRRLG 447 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~---~~~~~~~vIyiGDs~tDl~~l~~Ad-igiv~~~~-~~L~~~~ 447 (499)
.+.+|...++.+++.. +.+ ..+++++|||.||++|+..++ +||+|++. +.+++.+
T Consensus 172 ~g~sKg~Al~~L~~~~~~~gi~-~~~~iafGDs~NDleMl~~ag~~gvam~NA~~elk~~a 231 (413)
T PLN02382 172 QGAGKGQALAYLLKKLKAEGKA-PVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEELLQWY 231 (413)
T ss_pred CCCCHHHHHHHHHHHhhhcCCC-hhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHHHHHH
Confidence 3557999999988876 443 468999999999999999999 69999874 5677654
No 147
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=96.51 E-value=0.0043 Score=61.23 Aligned_cols=77 Identities=22% Similarity=0.258 Sum_probs=49.5
Q ss_pred HHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCcc
Q 010855 355 LIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIG 434 (499)
Q Consensus 355 ~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adig 434 (499)
-|+..|+..|+..--+++| +... .+.+ .+.+|...++-++...+.+ ..+++++|||-||++||..+..|
T Consensus 135 ~i~~~l~~~~l~~~~i~s~------~~~l-dilP---~~a~K~~Al~~L~~~~~~~-~~~vl~aGDSgND~~mL~~~~~~ 203 (247)
T PF05116_consen 135 EIRARLRQRGLRVNVIYSN------GRDL-DILP---KGASKGAALRYLMERWGIP-PEQVLVAGDSGNDLEMLEGGDHG 203 (247)
T ss_dssp HHHHHHHCCTCEEEEEECT------CCEE-EEEE---TT-SHHHHHHHHHHHHT---GGGEEEEESSGGGHHHHCCSSEE
T ss_pred HHHHHHHHcCCCeeEEEcc------ceeE-EEcc---CCCCHHHHHHHHHHHhCCC-HHHEEEEeCCCCcHHHHcCcCCE
Confidence 4666677766532223333 2110 1222 3446999999888877653 46899999999999999888889
Q ss_pred EEEcCC-ch
Q 010855 435 IVIGSS-SS 442 (499)
Q Consensus 435 iv~~~~-~~ 442 (499)
|++++. +.
T Consensus 204 vvV~Na~~e 212 (247)
T PF05116_consen 204 VVVGNAQPE 212 (247)
T ss_dssp EE-TTS-HH
T ss_pred EEEcCCCHH
Confidence 999874 44
No 148
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0059 Score=68.19 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=71.7
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCC--CceEEEeec-eEeeC------Ceeecccc-cc
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL--NAFRVHSNE-LVYEE------SISTGEIV-NK 389 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl--~~~~I~aN~-l~~~~------g~~tG~~~-~~ 389 (499)
+-+.|||.++-++.|++.| +.+-.|.+. .-.--+++..+.|+ ++....|=+ -+|.+ ....+++. -.
T Consensus 645 kDPvRPgV~~AV~~Cq~AG---ItVRMVTGD-NI~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlA 720 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAG---ITVRMVTGD-NINTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLA 720 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcC---cEEEEEeCC-cHHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeee
Confidence 3489999999999999999 999999974 22334555566664 111111110 01110 00111111 01
Q ss_pred CCChhhhHHHHHHHHhhcCCCCCceEE-EEcCCcccHHHHHhcCccEEEcC
Q 010855 390 LESPLEKLQAFNDILKDHSNDEQNLTV-YIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 390 ~~~g~~K~~~l~~~~~~~~~~~~~~vI-yiGDs~tDl~~l~~Adigiv~~~ 439 (499)
.-++.||...++.++.. .++| .-|||.||-|+|++||+|.+|+=
T Consensus 721 RSSP~DK~lLVk~L~~~------g~VVAVTGDGTNDaPALkeADVGlAMGI 765 (1034)
T KOG0204|consen 721 RSSPNDKHLLVKGLIKQ------GEVVAVTGDGTNDAPALKEADVGLAMGI 765 (1034)
T ss_pred cCCCchHHHHHHHHHhc------CcEEEEecCCCCCchhhhhcccchhccc
Confidence 24678999999888842 3555 68999999999999999999984
No 149
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.34 E-value=0.0097 Score=60.07 Aligned_cols=101 Identities=5% Similarity=-0.119 Sum_probs=63.2
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc---eEEEeeceEeeCCeeecccccc----CCCh
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA---FRVHSNELVYEESISTGEIVNK----LESP 393 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~---~~I~aN~l~~~~g~~tG~~~~~----~~~g 393 (499)
..+.||+.++++.++++| +++.|+|+. +....+..++.+++.. ..+++-. .+..+... -...
T Consensus 186 ~~~~~~~~~~l~~l~~~g---~~i~i~T~r-~~~~~~~~l~~l~~~~~~f~~i~~~~-------~~~~~~~~~~~~kp~p 254 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAG---YEIIVVSGR-DGVCEEDTVEWLRQTDIWFDDLIGRP-------PDMHFQREQGDKRPDD 254 (300)
T ss_pred CCCChhHHHHHHHHHhCC---CEEEEEeCC-ChhhHHHHHHHHHHcCCchhhhhCCc-------chhhhcccCCCCCCcH
Confidence 467899999999999999 999999988 4667777777654321 1122211 00001100 1112
Q ss_pred hhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEE
Q 010855 394 LEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIV 436 (499)
Q Consensus 394 ~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv 436 (499)
.-+...++++. ...+..++||||+.+|+.+.+.+++.++
T Consensus 255 ~~~~~~l~~~~----~~~~~~~~~vgD~~~d~~~a~~~Gi~~i 293 (300)
T PHA02530 255 VVKEEIFWEKI----APKYDVLLAVDDRDQVVDMWRRIGLECW 293 (300)
T ss_pred HHHHHHHHHHh----ccCceEEEEEcCcHHHHHHHHHhCCeEE
Confidence 22333444332 2124679999999999999999998544
No 150
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.24 E-value=0.0068 Score=59.65 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=44.6
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHh-cCccEEEcCC-chHHhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLE-ADIGIVIGSS-SSLRRLGD 448 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~-Adigiv~~~~-~~L~~~~~ 448 (499)
.+.+|...++.+++..+.+ ..+++++|||.||++|++. ++.+|+|++. +.+++.+.
T Consensus 164 ~~~~K~~al~~l~~~~~i~-~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~k~~~~ 221 (249)
T TIGR01485 164 QGSGKGQALQYLLQKLAME-PSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEELLQWYD 221 (249)
T ss_pred CCCChHHHHHHHHHHcCCC-ccCEEEEECChhHHHHHHccCCcEEEECCCHHHHHHHHH
Confidence 3457999999998877663 5789999999999999998 5679999874 56665543
No 151
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=96.21 E-value=0.083 Score=49.82 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=58.7
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHH
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQ 398 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~ 398 (499)
..++.-||+.+.++.+.+.| ...++|++.-.. ....+...|.+
T Consensus 70 ~~l~p~~gA~e~l~~L~~~g---~~~~~Itar~~~----------------------------------~~~~~~~~k~~ 112 (191)
T PF06941_consen 70 SNLPPIPGAVEALKKLRDKG---HEIVIITARPPE----------------------------------FPDHSAEEKRE 112 (191)
T ss_dssp TT--B-TTHHHHHHHHHTST---TEEEEEEE-SSS----------------------------------SGCCCHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHcC---CcEEEEEecCcc----------------------------------ccchHHHHHHH
Confidence 35778899999999999988 666666653100 00002234555
Q ss_pred HHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCCchHHhhhhhhCCccccccchHHHHHHHhhcCCCccccc
Q 010855 399 AFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSSSSLRRLGDHFGVSFVPLFSSLVERQKELVDGSSYKWKR 478 (499)
Q Consensus 399 ~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~~~~~~~~~ 478 (499)
-|++..... ...++++.||- .+..+| |++-+++.-.+-+...|++.+=|. .. |-+
T Consensus 113 Wl~~hf~~i---~~~~~~~~~~K-----~~v~~D--vlIDD~~~n~~~~~~~g~~~iLfd-~p--------------~Nr 167 (191)
T PF06941_consen 113 WLERHFPFI---PYDNLIFTGDK-----TLVGGD--VLIDDRPHNLEQFANAGIPVILFD-QP--------------YNR 167 (191)
T ss_dssp HHHHHHTHH---HHCCEEEESSG-----GGC--S--EEEESSSHHHSS-SSESSEEEEE---G--------------GGT
T ss_pred HHHHHcCCC---chheEEEecCC-----CeEecc--EEecCChHHHHhccCCCceEEEEc-CC--------------CCC
Confidence 555543211 01234454442 123455 566666555555666676655442 00 111
Q ss_pred cCCEEEEEcCHHHHHHhhc
Q 010855 479 LPGTLYTVSSWAEIHAFIL 497 (499)
Q Consensus 479 ~~g~ly~~~~W~~i~~~~~ 497 (499)
.-...++|.+|.||.+++.
T Consensus 168 ~~~~~~Rv~~W~ei~~~i~ 186 (191)
T PF06941_consen 168 DESNFPRVNNWEEIEDLIL 186 (191)
T ss_dssp T--TSEEE-STTSHHHHHH
T ss_pred CCCCCccCCCHHHHHHHHH
Confidence 0015899999999987763
No 152
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.18 E-value=0.0041 Score=58.98 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=38.5
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEE
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVI 437 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~ 437 (499)
.+.+|...++.+++..+.+ ...+++||||.||++|+..++++|+|
T Consensus 160 ~~~~K~~~~~~~~~~~~~~-~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 160 AGVDKGSALQALLKELNGK-RDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred CCCChHHHHHHHHHHhCCC-HHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 4568999999999876643 46799999999999999999998875
No 153
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=96.07 E-value=0.05 Score=55.77 Aligned_cols=111 Identities=12% Similarity=-0.015 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHc----CCCCc--eEEEeeceEeeCCeeeccccccCCChhhh
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFAS----GDLNA--FRVHSNELVYEESISTGEIVNKLESPLEK 396 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~----~gl~~--~~I~aN~l~~~~g~~tG~~~~~~~~g~~K 396 (499)
+.+|+.++++.++++| +.+.|+|.+- ...+..+|++ .++.. ..+.+| ...|
T Consensus 32 ~~~~~~e~L~~L~~~G---i~lai~S~n~-~~~a~~~l~~~~~~~~~~~~f~~~~~~-------------------~~pk 88 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQG---FLLALASKND-EDDAKKVFERRKDFILQAEDFDARSIN-------------------WGPK 88 (320)
T ss_pred cHHHHHHHHHHHHhCC---CEEEEEcCCC-HHHHHHHHHhCccccCcHHHeeEEEEe-------------------cCch
Confidence 3789999999999999 9999999995 6788889987 33321 112121 1248
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhhhhCCcccccc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~~~gi~~~p~~ 458 (499)
...+++++...+.+ ...++||||+..|+.....+...|-+... ..+.+.+... +.|.|..
T Consensus 89 ~~~i~~~~~~l~i~-~~~~vfidD~~~d~~~~~~~lp~~~~~~~~~~~~~~l~~~-~~~~~~~ 149 (320)
T TIGR01686 89 SESLRKIAKKLNLG-TDSFLFIDDNPAERANVKITLPVKTLLCDPAELAAILLFL-NELLPLA 149 (320)
T ss_pred HHHHHHHHHHhCCC-cCcEEEECCCHHHHHHHHHHCCCCccCCChHHHHHHhccc-ccccCcc
Confidence 88888888877663 57899999999999999987644433332 3444444332 2344443
No 154
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=95.96 E-value=0.13 Score=50.91 Aligned_cols=110 Identities=9% Similarity=0.102 Sum_probs=71.5
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHH---cCCCCceEE-EeeceE-----eeCC----
Q 010855 314 IKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFA---SGDLNAFRV-HSNELV-----YEES---- 380 (499)
Q Consensus 314 l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~---~~gl~~~~I-~aN~l~-----~~~g---- 380 (499)
+....+...+.+.+.++++.++++| +++..+|..+ ..+....++ +.|++...- ..++.. +.+.
T Consensus 73 i~~~~~~~lie~~~~~~i~~lq~~~---~~v~alT~~~-~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~ 148 (252)
T PF11019_consen 73 IFELRKMELIESDVPNIINSLQNKG---IPVIALTARG-PNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRA 148 (252)
T ss_pred HHhhcceEEcchhHHHHHHHHHHCC---CcEEEEcCCC-hhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCC
Confidence 3444556678889999999999999 9999999986 666666654 345432111 111110 0000
Q ss_pred --eeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc
Q 010855 381 --ISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA 431 (499)
Q Consensus 381 --~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A 431 (499)
...|-+ .++|.+|...|..++...+. .+.++|||-|+.-.+..+..+
T Consensus 149 ~~~~~GIl---ft~~~~KG~~L~~fL~~~~~-~pk~IIfIDD~~~nl~sv~~a 197 (252)
T PF11019_consen 149 PSFYDGIL---FTGGQDKGEVLKYFLDKINQ-SPKKIIFIDDNKENLKSVEKA 197 (252)
T ss_pred ceeecCeE---EeCCCccHHHHHHHHHHcCC-CCCeEEEEeCCHHHHHHHHHH
Confidence 011111 24567899999999987665 367899999999888765554
No 155
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.95 E-value=0.008 Score=66.75 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=39.7
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEE--cCCcccHHHHHhcCccEEEcCC
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYI--GGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyi--GDs~tDl~~l~~Adigiv~~~~ 440 (499)
.+.+|...++.+++..+.. ..+++.+ |||.||++||..||+||+|++.
T Consensus 610 ~gvdKG~AL~~L~e~~gI~-~~eViafalGDs~NDisMLe~Ag~gVAM~~~ 659 (694)
T PRK14502 610 GGNDKGKAIKILNELFRLN-FGNIHTFGLGDSENDYSMLETVDSPILVQRP 659 (694)
T ss_pred CCCCHHHHHHHHHHHhCCC-ccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence 3678999999998877653 2456666 9999999999999999999874
No 156
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.008 Score=65.68 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=66.7
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
+.=|.++..-+..++.++ ....|+++. |-.+.....+.. .+++.|- + +.+.+--|++..|+++.
T Consensus 710 v~sr~dah~eL~~lR~k~---~~aLvi~G~-Sl~~cl~yye~E---f~el~~~--------~-~aVv~CRctPtQKA~v~ 773 (1051)
T KOG0210|consen 710 VTSRGDAHNELNNLRRKT---DCALVIDGE-SLEFCLKYYEDE---FIELVCE--------L-PAVVCCRCTPTQKAQVV 773 (1051)
T ss_pred cCCchHHHHHHHHhhcCC---CcEEEEcCc-hHHHHHHHHHHH---HHHHHHh--------c-CcEEEEecChhHHHHHH
Confidence 455667777777777766 556666653 222221111110 1111110 0 01111247888999988
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC-chHHhhhhhhCC
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS-SSLRRLGDHFGV 452 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~-~~L~~~~~~~gi 452 (499)
+-+.+.. +..+.+||||-||..|+..||+||-+-++ .+=+.+|..+.|
T Consensus 774 ~llq~~t----~krvc~IGDGGNDVsMIq~A~~GiGI~gkEGkQASLAADfSI 822 (1051)
T KOG0210|consen 774 RLLQKKT----GKRVCAIGDGGNDVSMIQAADVGIGIVGKEGKQASLAADFSI 822 (1051)
T ss_pred HHHHHhh----CceEEEEcCCCccchheeecccceeeecccccccchhccccH
Confidence 8777653 35788999999999999999998877654 333444455544
No 157
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=95.85 E-value=0.056 Score=52.79 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCC--hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
+.-||+.+|++.++++| +.+++||+=-. ...-..-|.+.|+... +.+.+.. .+.. .+.....-|..+
T Consensus 115 ~aip~a~~l~~~~~~~G---~~V~~iT~R~~~~r~~T~~nL~~~G~~~~----~~l~lr~---~~~~-~~~~~~~yK~~~ 183 (229)
T PF03767_consen 115 PAIPGALELYNYARSRG---VKVFFITGRPESQREATEKNLKKAGFPGW----DHLILRP---DKDP-SKKSAVEYKSER 183 (229)
T ss_dssp EEETTHHHHHHHHHHTT---EEEEEEEEEETTCHHHHHHHHHHHTTSTB----SCGEEEE---ESST-SS------SHHH
T ss_pred cccHHHHHHHHHHHHCC---CeEEEEecCCchhHHHHHHHHHHcCCCcc----chhcccc---cccc-ccccccccchHH
Confidence 66788999999999999 99999998321 2233334555565321 1111100 0000 011123347777
Q ss_pred HHHHHhhcCCCCCceEE-EEcCCcccHHHH
Q 010855 400 FNDILKDHSNDEQNLTV-YIGGSPGDLLCL 428 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vI-yiGDs~tDl~~l 428 (499)
.+.+.+. +.+++ +|||..+|+.-.
T Consensus 184 r~~i~~~-----Gy~Ii~~iGD~~~D~~~~ 208 (229)
T PF03767_consen 184 RKEIEKK-----GYRIIANIGDQLSDFSGA 208 (229)
T ss_dssp HHHHHHT-----TEEEEEEEESSGGGCHCT
T ss_pred HHHHHHc-----CCcEEEEeCCCHHHhhcc
Confidence 7777653 24555 899999999873
No 158
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=95.84 E-value=0.0087 Score=59.75 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=41.3
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc----CccEEEcCCc
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA----DIGIVIGSSS 441 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A----digiv~~~~~ 441 (499)
.+.+|...++++++..+.. ...++|+||+.||..|+..+ ++||.|+.+.
T Consensus 171 ~g~~Kg~al~~ll~~~~~~-~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~ 223 (266)
T PRK10187 171 RGTNKGEAIAAFMQEAPFA-GRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA 223 (266)
T ss_pred CCCCHHHHHHHHHHhcCCC-CCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC
Confidence 3568999999999877653 46799999999999999999 8899998753
No 159
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.72 E-value=0.092 Score=51.43 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=57.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHH--HHHHcCCCCc---eEEEeeceEeeCCeeeccccccCCChh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIR--SAFASGDLNA---FRVHSNELVYEESISTGEIVNKLESPL 394 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~--~~L~~~gl~~---~~I~aN~l~~~~g~~tG~~~~~~~~g~ 394 (499)
...+-||+.+++++++++| .++.|+|.+ +..... ..|++.|+.. ..|+++. .
T Consensus 22 ~~~~~pga~e~L~~L~~~G---~~~~ivTN~-~~~~~~~~~~L~~~gl~~~~~~~Ii~s~-------------------~ 78 (242)
T TIGR01459 22 GNHTYPGAVQNLNKIIAQG---KPVYFVSNS-PRNIFSLHKTLKSLGINADLPEMIISSG-------------------E 78 (242)
T ss_pred CCccCccHHHHHHHHHHCC---CEEEEEeCC-CCChHHHHHHHHHCCCCccccceEEccH-------------------H
Confidence 3567899999999999999 999999987 355444 6778777642 1222221 1
Q ss_pred hhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 395 EKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 395 ~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
.-...+.+..+..+. .+..++++||+..|+..+..++
T Consensus 79 ~~~~~l~~~~~~~~~-~~~~~~~vGd~~~d~~~~~~~~ 115 (242)
T TIGR01459 79 IAVQMILESKKRFDI-RNGIIYLLGHLENDIINLMQCY 115 (242)
T ss_pred HHHHHHHhhhhhccC-CCceEEEeCCcccchhhhcCCC
Confidence 111344444333222 1356899999999988775433
No 160
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=95.72 E-value=0.22 Score=48.32 Aligned_cols=105 Identities=10% Similarity=0.120 Sum_probs=62.4
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCC-C-Cce-EEEe-eceEeeCCeeeccccccCCChh
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGD-L-NAF-RVHS-NELVYEESISTGEIVNKLESPL 394 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~g-l-~~~-~I~a-N~l~~~~g~~tG~~~~~~~~g~ 394 (499)
....+.||+..+++.|..+| +|+.++|..- ....+..+..++ + ..+ ++++ ...+ +..|..
T Consensus 89 ~~~~~~PGa~kLv~~L~~~g---ip~alat~s~-~~~~~~k~~~~~~~~~~f~~~v~~d~~~----v~~gKP-------- 152 (222)
T KOG2914|consen 89 MNSILMPGAEKLVNHLKNNG---IPVALATSST-SASFELKISRHEDIFKNFSHVVLGDDPE----VKNGKP-------- 152 (222)
T ss_pred cccccCCcHHHHHHHHHhCC---CCeeEEecCC-cccHHHHHHHhhHHHHhcCCCeecCCcc----ccCCCC--------
Confidence 36889999999999999999 9999999873 333444444443 1 101 1111 1111 111211
Q ss_pred hhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC
Q 010855 395 EKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 395 ~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
....+-.-....+....++++.+.|+.+=+.+.+.|+.-+++-++
T Consensus 153 -~Pdi~l~A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 153 -DPDIYLKAAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred -CchHHHHHHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 111111111122222237899999999999999999976665554
No 161
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=95.56 E-value=0.094 Score=49.21 Aligned_cols=105 Identities=16% Similarity=0.121 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEec--cC-Ch-----------HHHHHHHHcCCCCceEEEeeceEeeCCeeeccc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSY--CW-CG-----------DLIRSAFASGDLNAFRVHSNELVYEESISTGEI 386 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~--g~-s~-----------~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~ 386 (499)
..+.||..+.+..+++.| ..++|||. |. .. ..+...|+..|..... ++.-+.
T Consensus 30 ~~~~~g~i~al~~l~~~g---y~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~-----------i~~Cph 95 (181)
T COG0241 30 FQFIPGVIPALLKLQRAG---YKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDG-----------ILYCPH 95 (181)
T ss_pred hccCccHHHHHHHHHhCC---CeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccce-----------EEECCC
Confidence 578899999999999999 99999997 10 01 1234444444432122 211111
Q ss_pred cc--cCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcCC
Q 010855 387 VN--KLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGSS 440 (499)
Q Consensus 387 ~~--~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~~ 440 (499)
.+ .+.|..-|.-.+.+++++.+.+ ...+++|||..+|+.++..+++ |+.+...
T Consensus 96 ~p~~~c~cRKP~~gm~~~~~~~~~iD-~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~ 151 (181)
T COG0241 96 HPEDNCDCRKPKPGMLLSALKEYNID-LSRSYVVGDRLTDLQAAENAGIKGVLVLTG 151 (181)
T ss_pred CCCCCCcccCCChHHHHHHHHHhCCC-ccceEEecCcHHHHHHHHHCCCCceEEEcC
Confidence 11 1233334566788888877664 4789999999999999999997 5665543
No 162
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=95.31 E-value=0.1 Score=48.31 Aligned_cols=88 Identities=20% Similarity=0.336 Sum_probs=51.6
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccCCh---HHHHHHHHcCCCCceEEEee--ceEeeCCeeeccccccCCChhhhHHHHH
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCWCG---DLIRSAFASGDLNAFRVHSN--ELVYEESISTGEIVNKLESPLEKLQAFN 401 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~s~---~~I~~~L~~~gl~~~~I~aN--~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 401 (499)
+..+|+.++++| ..++.|.+- +. +-+...|++ +++| .| .+.| +|. .+-..-.+|...++
T Consensus 119 A~qLI~MHq~RG---D~i~FvTGR-t~gk~d~vsk~Lak----~F~i-~~m~pv~f-----~Gd--k~k~~qy~Kt~~i~ 182 (237)
T COG3700 119 ARQLIDMHQRRG---DAIYFVTGR-TPGKTDTVSKTLAK----NFHI-TNMNPVIF-----AGD--KPKPGQYTKTQWIQ 182 (237)
T ss_pred HHHHHHHHHhcC---CeEEEEecC-CCCcccccchhHHh----hccc-CCCcceee-----ccC--CCCcccccccHHHH
Confidence 456899999999 788888763 22 122223332 1222 11 2222 232 11123346776554
Q ss_pred HHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcC
Q 010855 402 DILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 402 ~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~ 439 (499)
+ ....|.+|||.+|+.++++|++ ||-+-+
T Consensus 183 ~---------~~~~IhYGDSD~Di~AAkeaG~RgIRilR 212 (237)
T COG3700 183 D---------KNIRIHYGDSDNDITAAKEAGARGIRILR 212 (237)
T ss_pred h---------cCceEEecCCchhhhHHHhcCccceeEEe
Confidence 2 1346899999999999999996 776543
No 163
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=95.28 E-value=0.35 Score=47.21 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHH---HHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCCh-hh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDL---IRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESP-LE 395 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~---I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g-~~ 395 (499)
..+.-||..+|++.++++| +.++++|+=. ... ...-|.+.|++.. .+|...+. + ...... .-
T Consensus 118 ~apaip~al~l~~~l~~~G---~~Vf~lTGR~-e~~r~~T~~nL~~~G~~~~----~~LiLR~~---~---d~~~~~~~y 183 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELG---IKIFLLSGRW-EELRNATLDNLINAGFTGW----KHLILRGL---E---DSNKTVVTY 183 (229)
T ss_pred CCCCCHHHHHHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHHHHHcCCCCc----CeeeecCC---C---CCCchHhHH
Confidence 4578899999999999999 9999999852 323 5566667776531 22222110 0 001111 22
Q ss_pred hHHHHHHHHhhcCCCCCceEE-EEcCCcccHH
Q 010855 396 KLQAFNDILKDHSNDEQNLTV-YIGGSPGDLL 426 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vI-yiGDs~tDl~ 426 (499)
|....+++.+. +.+++ .|||-.+|+.
T Consensus 184 Ks~~R~~l~~~-----GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 184 KSEVRKSLMEE-----GYRIWGNIGDQWSDLL 210 (229)
T ss_pred HHHHHHHHHhC-----CceEEEEECCChHHhc
Confidence 77777676643 45666 7999999994
No 164
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.99 E-value=0.12 Score=56.49 Aligned_cols=122 Identities=7% Similarity=0.005 Sum_probs=76.3
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCC-----------hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCC
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWC-----------GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLE 391 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s-----------~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~ 391 (499)
+.||+.+.|+.|+++| +.++|+|.--. ...+..+++.+|++..-++|-. ++ .
T Consensus 198 l~pgV~e~L~~L~~~G---y~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~----~~----~------ 260 (526)
T TIGR01663 198 IFPEIPEKLKELEADG---FKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIG----AG----F------ 260 (526)
T ss_pred cccCHHHHHHHHHHCC---CEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCC----CC----C------
Confidence 5789999999999999 99999997311 0247788888887533333321 00 0
Q ss_pred ChhhhHHHHHHHHhhcC----CCCCceEEEEcCCcccHHHHHhcCccEEEcC-CchHHhhhhhhCCccccccchHHHH
Q 010855 392 SPLEKLQAFNDILKDHS----NDEQNLTVYIGGSPGDLLCLLEADIGIVIGS-SSSLRRLGDHFGVSFVPLFSSLVER 464 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~----~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~-~~~L~~~~~~~gi~~~p~~~~~~~~ 464 (499)
+..-+...+..+....+ . ...+++||||..+|+.+...|+. --.+ ...=+.+|..-||+|..-++-+++.
T Consensus 261 ~RKP~pGm~~~a~~~~~~~~~I-d~~~S~~VGDaagr~~~g~~ag~--~~~D~s~~D~~FA~n~gi~F~tPee~Fl~~ 335 (526)
T TIGR01663 261 YRKPLTGMWDHLKEEANDGTEI-QEDDCFFVGDAAGRPANGKAAGK--KKKDFSCADRLFAANLGIPFATPEEFFLGK 335 (526)
T ss_pred CCCCCHHHHHHHHHhcCcccCC-CHHHeEEeCCcccchHHHHhcCC--CcCCCChhhHHHHHHcCCcccChHHHhCCC
Confidence 11112234444444432 2 24689999999999988777751 0011 1123567889999988766544443
No 165
>PTZ00174 phosphomannomutase; Provisional
Probab=94.83 E-value=0.033 Score=54.87 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=40.0
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcC----CcccHHHHHhcCc-cEEEcCC-chHHhhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGG----SPGDLLCLLEADI-GIVIGSS-SSLRRLGDH 449 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGD----s~tDl~~l~~Adi-giv~~~~-~~L~~~~~~ 449 (499)
.+.+|...|+.+.+. ..+++++|| |.||++|++.|.. |+.+++. +.+..+|+-
T Consensus 185 ~gvsKg~al~~L~~~-----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n~~~~~~~~~~~ 243 (247)
T PTZ00174 185 KGWDKTYCLRHLEND-----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKNPEDTIKILKEL 243 (247)
T ss_pred CCCcHHHHHHHHHhh-----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCCHHHHHHHHHHH
Confidence 456799999999875 368999999 8999999997643 6777653 455555543
No 166
>PLN02423 phosphomannomutase
Probab=94.57 E-value=0.045 Score=53.96 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=43.1
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcC----CcccHHHHHhcCc-cEEEcCCchHHhhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGG----SPGDLLCLLEADI-GIVIGSSSSLRRLGDH 449 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGD----s~tDl~~l~~Adi-giv~~~~~~L~~~~~~ 449 (499)
.|.+|...|+.+. . .++++++|| +.||++||+..++ |+.+.+.+.+.+.|.+
T Consensus 186 ~gvnKg~al~~L~-~-----~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~~~~~~~~~ 242 (245)
T PLN02423 186 QGWDKTYCLQFLE-D-----FDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPDDTREQCTA 242 (245)
T ss_pred CCCCHHHHHHHhc-C-----cCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHHHHHHHHHH
Confidence 4668999999998 1 478999999 8999999998775 8888877677777765
No 167
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=94.47 E-value=0.018 Score=53.04 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=57.3
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
.+..|||+.+|++.+.++ .+++|.|+| +..+++.+++..+... .++...+--++...+. .+ +
T Consensus 40 ~v~~RPgl~eFL~~l~~~----yei~I~Ts~-~~~yA~~il~~ldp~~-~~f~~~l~r~~~~~~~----------~~--~ 101 (162)
T TIGR02251 40 YVFKRPHVDEFLERVSKW----YELVIFTAS-LEEYADPVLDILDRGG-KVISRRLYRESCVFTN----------GK--Y 101 (162)
T ss_pred EEEECCCHHHHHHHHHhc----CEEEEEcCC-cHHHHHHHHHHHCcCC-CEEeEEEEccccEEeC----------CC--E
Confidence 478999999999999874 689999999 5889999998765321 1222211111111110 01 1
Q ss_pred HHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
++.+.. .+. ...++|+|||+..|+.+...+++
T Consensus 102 ~K~L~~-l~~-~~~~vIiVDD~~~~~~~~~~NgI 133 (162)
T TIGR02251 102 VKDLSL-VGK-DLSKVIIIDNSPYSYSLQPDNAI 133 (162)
T ss_pred EeEchh-cCC-ChhhEEEEeCChhhhccCccCEe
Confidence 111111 111 13689999999998876666653
No 168
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=93.14 E-value=0.079 Score=62.24 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=37.2
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
++..|+.+++-.+... +..+.+||||.||..|+..||+||.|...
T Consensus 778 sPlQKA~Vv~lVk~~~----~~~TLAIGDGANDVsMIQ~AhVGVGIsG~ 822 (1151)
T KOG0206|consen 778 SPLQKALVVKLVKKGL----KAVTLAIGDGANDVSMIQEAHVGVGISGQ 822 (1151)
T ss_pred CHHHHHHHHHHHHhcC----CceEEEeeCCCccchheeeCCcCeeeccc
Confidence 4678998888775332 45788999999999999999999999875
No 169
>PLN02580 trehalose-phosphatase
Probab=92.85 E-value=0.27 Score=51.59 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=37.4
Q ss_pred ChhhhHHHHHHHHhhcCCCCCce--EEEEcCCcccHHHHHh-----cCccEEEcC
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNL--TVYIGGSPGDLLCLLE-----ADIGIVIGS 439 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~--vIyiGDs~tDl~~l~~-----Adigiv~~~ 439 (499)
.+.+|...++.+++..+...... .+||||+.||..|+.. +++||+|+.
T Consensus 298 ~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn 352 (384)
T PLN02580 298 IDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSS 352 (384)
T ss_pred CCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEec
Confidence 35689999999998765532222 4899999999999996 477888875
No 170
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=92.47 E-value=0.15 Score=50.15 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=32.9
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA 431 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A 431 (499)
.+.+|...++.+++..+.. ...++|+||+.||..|+..+
T Consensus 164 ~~~~Kg~a~~~~~~~~~~~-~~~~i~iGD~~~D~~~~~~~ 202 (244)
T TIGR00685 164 RFVNKGEIVKRLLWHQPGS-GISPVYLGDDITDEDAFRVV 202 (244)
T ss_pred CCCCHHHHHHHHHHhcccC-CCceEEEcCCCcHHHHHHHH
Confidence 3568999999999876543 36799999999999999998
No 171
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=91.97 E-value=0.31 Score=54.94 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=23.9
Q ss_pred eEE-EEcCCcccHHHHHhcCccEEEc-CCc
Q 010855 414 LTV-YIGGSPGDLLCLLEADIGIVIG-SSS 441 (499)
Q Consensus 414 ~vI-yiGDs~tDl~~l~~Adigiv~~-~~~ 441 (499)
.+| ..|||+||-|+|+.|||||+|+ +++
T Consensus 706 aiVaVTGDGVNDsPALKKADIGVAMGiaGS 735 (1019)
T KOG0203|consen 706 AIVAVTGDGVNDSPALKKADIGVAMGIAGS 735 (1019)
T ss_pred cEEEEeCCCcCCChhhcccccceeeccccc
Confidence 345 7999999999999999999996 344
No 172
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=91.75 E-value=2.7 Score=42.02 Aligned_cols=91 Identities=11% Similarity=0.088 Sum_probs=53.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCC--hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKL 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~ 397 (499)
..+--||+.+|++.++++| +.+++||+=-. ......-|.+.|++.- .+|...+. +.- .+.....-|.
T Consensus 143 ~ApAlp~al~ly~~l~~~G---~kIf~VSgR~e~~r~aT~~NL~kaGy~~~----~~LiLR~~---~D~-~~~~av~yKs 211 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLG---FKIIFLSGRLKDKQAVTEANLKKAGYHTW----EKLILKDP---QDN-SAENAVEYKT 211 (275)
T ss_pred cCCCChHHHHHHHHHHHCC---CEEEEEeCCchhHHHHHHHHHHHcCCCCc----ceeeecCC---CCC-ccchhHHHHH
Confidence 4566779999999999999 99999998521 2234444566676421 12222110 000 0011123465
Q ss_pred HHHHHHHhhcCCCCCceEE-EEcCCcccHH
Q 010855 398 QAFNDILKDHSNDEQNLTV-YIGGSPGDLL 426 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vI-yiGDs~tDl~ 426 (499)
...+++.++ +.+++ .|||-.+|+.
T Consensus 212 ~~R~~li~e-----GYrIv~~iGDq~sDl~ 236 (275)
T TIGR01680 212 AARAKLIQE-----GYNIVGIIGDQWNDLK 236 (275)
T ss_pred HHHHHHHHc-----CceEEEEECCCHHhcc
Confidence 555555542 35666 8999999993
No 173
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=91.49 E-value=0.34 Score=38.29 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCC-cccHHHHHhcCc-cEEEcCC
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGS-PGDLLCLLEADI-GIVIGSS 440 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l~~Adi-giv~~~~ 440 (499)
..+.......+.+ ..++++|||+ .+|+.+.+.+++ +|++..+
T Consensus 8 ~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG 51 (75)
T PF13242_consen 8 GMLEQALKRLGVD-PSRCVMVGDSLETDIEAAKAAGIDTILVLTG 51 (75)
T ss_dssp HHHHHHHHHHTSG-GGGEEEEESSTTTHHHHHHHTTSEEEEESSS
T ss_pred HHHHHHHHHcCCC-HHHEEEEcCCcHhHHHHHHHcCCcEEEECCC
Confidence 3444444444442 5789999999 999999999998 6777653
No 174
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=90.94 E-value=1.8 Score=39.94 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=63.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHH
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQA 399 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~ 399 (499)
+-...|...+.+..+++.| +.++|||.+ +..-+..++++.|++.+ +-. + .+. ...
T Consensus 44 ~~~~tpe~~~W~~e~k~~g---i~v~vvSNn-~e~RV~~~~~~l~v~fi--~~A------~-------KP~------~~~ 98 (175)
T COG2179 44 NPDATPELRAWLAELKEAG---IKVVVVSNN-KESRVARAAEKLGVPFI--YRA------K-------KPF------GRA 98 (175)
T ss_pred CCCCCHHHHHHHHHHHhcC---CEEEEEeCC-CHHHHHhhhhhcCCcee--ecc------c-------Ccc------HHH
Confidence 3467778889999999999 999999987 67778888887764321 110 0 111 123
Q ss_pred HHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEc
Q 010855 400 FNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIG 438 (499)
Q Consensus 400 l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~ 438 (499)
+++-+...+.+ .++++.|||.. ||+.....+++ -|.+-
T Consensus 99 fr~Al~~m~l~-~~~vvmVGDqL~TDVlggnr~G~~tIlV~ 138 (175)
T COG2179 99 FRRALKEMNLP-PEEVVMVGDQLFTDVLGGNRAGMRTILVE 138 (175)
T ss_pred HHHHHHHcCCC-hhHEEEEcchhhhhhhcccccCcEEEEEE
Confidence 44444444453 57899999995 99999999986 45443
No 175
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=90.61 E-value=1.3 Score=41.12 Aligned_cols=104 Identities=8% Similarity=-0.005 Sum_probs=62.1
Q ss_pred HHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCeeeccccc-cCCC
Q 010855 316 WASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESISTGEIVN-KLES 392 (499)
Q Consensus 316 ~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~~tG~~~~-~~~~ 392 (499)
+.++.+.|.|+..+.|+.|+++| +.+.|-|-.+.++..+.+|+..++.. ....... ..|.. .+..
T Consensus 39 ~~g~~v~lypdv~~iL~~L~~~g---v~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~---------~~F~~~eI~~ 106 (169)
T PF12689_consen 39 SRGEEVSLYPDVPEILQELKERG---VKLAVASRTDEPDWARELLKLLEIDDADGDGVPLI---------EYFDYLEIYP 106 (169)
T ss_dssp TT--EE---TTHHHHHHHHHHCT-----EEEEE--S-HHHHHHHHHHTT-C-------------------CCECEEEESS
T ss_pred CCCCEEEeCcCHHHHHHHHHHCC---CEEEEEECCCChHHHHHHHHhcCCCccccccccch---------hhcchhheec
Confidence 44678999999999999999999 99999998777889999999877640 0010000 01111 1112
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
.+|.+.++++....+. .+..++++=|-..-+.....-|+
T Consensus 107 -gsK~~Hf~~i~~~tgI-~y~eMlFFDDe~~N~~~v~~lGV 145 (169)
T PF12689_consen 107 -GSKTTHFRRIHRKTGI-PYEEMLFFDDESRNIEVVSKLGV 145 (169)
T ss_dssp -S-HHHHHHHHHHHH----GGGEEEEES-HHHHHHHHTTT-
T ss_pred -CchHHHHHHHHHhcCC-ChhHEEEecCchhcceeeEecCc
Confidence 2799999999987776 36789999999988888777554
No 176
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=89.94 E-value=0.31 Score=55.65 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=37.8
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhc---CccEEEcCCc
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEA---DIGIVIGSSS 441 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~A---digiv~~~~~ 441 (499)
.+.+|...++.+++.. ....++++||+.||.+|+..+ +++|.++.++
T Consensus 654 ~~vnKG~al~~ll~~~---~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~~ 703 (726)
T PRK14501 654 AGVNKGRAVRRLLEAG---PYDFVLAIGDDTTDEDMFRALPETAITVKVGPGE 703 (726)
T ss_pred CCCCHHHHHHHHHhcC---CCCEEEEECCCCChHHHHHhcccCceEEEECCCC
Confidence 3457999999998733 246799999999999999987 4688888754
No 177
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=88.93 E-value=23 Score=34.29 Aligned_cols=117 Identities=13% Similarity=0.138 Sum_probs=68.6
Q ss_pred CHHHHHHHhh------cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeeceEeeCCe
Q 010855 310 NLEDIKWASQ------HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNELVYEESI 381 (499)
Q Consensus 310 ~~~~l~~~~~------~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~l~~~~g~ 381 (499)
+.++..+++. .+..++-...++-.++.++ ..|++.+. ..=...+|+..|+.. ..|+|-+ +.+-.
T Consensus 82 d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~-----k~~FTNa~-k~HA~r~Lk~LGieDcFegii~~e--~~np~ 153 (244)
T KOG3109|consen 82 DADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR-----KWIFTNAY-KVHAIRILKKLGIEDCFEGIICFE--TLNPI 153 (244)
T ss_pred CHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc-----EEEecCCc-HHHHHHHHHHhChHHhccceeEee--ccCCC
Confidence 4566666653 3445555678888887653 67778775 444445677877632 3344421 11100
Q ss_pred eeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcCC
Q 010855 382 STGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGSS 440 (499)
Q Consensus 382 ~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~~ 440 (499)
-+ .+. |-+. ...++......+.+.+.+++++-||.+-+...+..|. +++++..
T Consensus 154 ~~-~~v---cKP~--~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~ 207 (244)
T KOG3109|consen 154 EK-TVV---CKPS--EEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGRE 207 (244)
T ss_pred CC-cee---ecCC--HHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEee
Confidence 00 111 1111 2334444444455557899999999999999999997 5666553
No 178
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=88.00 E-value=1.1 Score=45.17 Aligned_cols=49 Identities=12% Similarity=0.014 Sum_probs=40.9
Q ss_pred CCCC-hhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEee
Q 010855 321 LIFQ-DGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSN 373 (499)
Q Consensus 321 i~lr-~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN 373 (499)
+++| ||..++++.++++| +++.|+|.| +.+.+...|+..|+.. ..|+||
T Consensus 144 v~irdPgV~EaL~~LkekG---ikLaIaTS~-~Re~v~~~L~~lGLd~YFdvIIs~ 195 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRG---CILVLWSYG-DRDHVVESMRKVKLDRYFDIIISG 195 (301)
T ss_pred cccCCHHHHHHHHHHHHCC---CEEEEEECC-CHHHHHHHHHHcCCCcccCEEEEC
Confidence 5678 99999999999999 999999988 4778889999988863 345555
No 179
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=87.14 E-value=0.61 Score=52.59 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC
Q 010855 394 LEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 394 ~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
..|..++..+.+ .+..+...|||.||.-+|++|++||++-++
T Consensus 793 ~QKE~ii~tlK~-----~Gy~TLMCGDGTNDVGALK~AhVGVALL~~ 834 (1160)
T KOG0209|consen 793 KQKEFIITTLKK-----LGYVTLMCGDGTNDVGALKQAHVGVALLNN 834 (1160)
T ss_pred hhHHHHHHHHHh-----cCeEEEEecCCCcchhhhhhcccceehhcC
Confidence 344444444443 257889999999999999999999998764
No 180
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=87.00 E-value=2.3 Score=42.24 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.0
Q ss_pred CCCceEEEEeCCcccccc
Q 010855 195 VEGHLTLFCDFDWTCTAF 212 (499)
Q Consensus 195 ~~~~~~ii~DFD~TIT~~ 212 (499)
.+++.+|++|.||||...
T Consensus 4 ~~~~~lI~~DlDGTLL~~ 21 (271)
T PRK03669 4 LQDPLLIFTDLDGTLLDS 21 (271)
T ss_pred cCCCeEEEEeCccCCcCC
Confidence 356789999999999963
No 181
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=86.69 E-value=5.8 Score=41.12 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=67.4
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcC-C-------CC--ceEEE--eeceEe-eCCe-----
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASG-D-------LN--AFRVH--SNELVY-EESI----- 381 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~-g-------l~--~~~I~--aN~l~~-~~g~----- 381 (499)
-+...||+.++++.++++| .++.|+|.+ ..++++.+++.. | +. ...|+ |+...| .++.
T Consensus 182 yv~~~pgl~elL~~Lr~~G---~klfLvTNS-~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v 257 (343)
T TIGR02244 182 YVLRDPKLPLFLSKLKEHG---KKLFLLTNS-DYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQV 257 (343)
T ss_pred HhccchhHHHHHHHHHHCC---CeEEEEeCC-CHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEE
Confidence 4667999999999999999 999999998 467888888774 3 21 12333 333333 1110
Q ss_pred --eecccc---------ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCC-cccHHHHH-hcCc-cEEEcC
Q 010855 382 --STGEIV---------NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGS-PGDLLCLL-EADI-GIVIGS 439 (499)
Q Consensus 382 --~tG~~~---------~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l~-~Adi-giv~~~ 439 (499)
.+|... +++.+| +-...+.+.+.. .+.+++||||. .+|+...+ .++. .|+|.+
T Consensus 258 ~~~~g~~~~~~~~~l~~g~vY~g-Gn~~~~~~~l~~----~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 258 DVETGSLKWGEVDGLEPGKVYSG-GSLKQFHELLKW----RGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred eCCCCcccCCccccccCCCeEeC-CCHHHHHHHHCC----CCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 112111 112111 233445555532 24789999997 48998887 7875 454444
No 182
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=86.58 E-value=1.4 Score=44.48 Aligned_cols=51 Identities=6% Similarity=-0.023 Sum_probs=41.6
Q ss_pred cCCCC-hhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCc--eEEEeec
Q 010855 320 HLIFQ-DGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNA--FRVHSNE 374 (499)
Q Consensus 320 ~i~lr-~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~--~~I~aN~ 374 (499)
++++| ||..++++.++++| +++.|+|.| +.+.++..|+..|+.. ..|+|+.
T Consensus 145 ~v~irdp~V~EtL~eLkekG---ikLaIvTNg-~Re~v~~~Le~lgL~~yFDvII~~g 198 (303)
T PHA03398 145 PVRIRDPFVYDSLDELKERG---CVLVLWSYG-NREHVVHSLKETKLEGYFDIIICGG 198 (303)
T ss_pred ccccCChhHHHHHHHHHHCC---CEEEEEcCC-ChHHHHHHHHHcCCCccccEEEECC
Confidence 46778 99999999999999 999999988 4778899999988753 2455653
No 183
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=86.21 E-value=0.61 Score=53.49 Aligned_cols=45 Identities=24% Similarity=0.294 Sum_probs=36.5
Q ss_pred CChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcCC
Q 010855 391 ESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGSS 440 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~~ 440 (499)
+.+..|...+.++.+- ++.|-+.|||.||--+|+.||+||.+...
T Consensus 836 MsP~qK~~Lie~lQkl-----~y~VgfCGDGANDCgALKaAdvGISLSea 880 (1140)
T KOG0208|consen 836 MSPDQKAELIEALQKL-----GYKVGFCGDGANDCGALKAADVGISLSEA 880 (1140)
T ss_pred cCchhHHHHHHHHHhc-----CcEEEecCCCcchhhhhhhcccCcchhhh
Confidence 4567888888777652 45677999999999999999999998754
No 184
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=84.67 E-value=1.4 Score=43.13 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCC-cccHHHHHhcCcc
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGS-PGDLLCLLEADIG 434 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l~~Adig 434 (499)
...++......+.....++++|||+ .+|+.+...+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~ 236 (242)
T TIGR01459 198 PAIFHKALKECSNIPKNRMLMVGDSFYTDILGANRLGID 236 (242)
T ss_pred HHHHHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCe
Confidence 3455555555443223579999999 6999999999973
No 185
>PLN02645 phosphoglycolate phosphatase
Probab=83.33 E-value=4.6 Score=41.13 Aligned_cols=86 Identities=21% Similarity=0.161 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCC--hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHH
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAF 400 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l 400 (499)
+-||..++++.++++| .+++++|.+-+ ..-+..-|+..|+.. . .+.+++. +. .+
T Consensus 45 ~~~ga~e~l~~lr~~g---~~~~~~TN~~~~~~~~~~~~l~~lGi~~--------~-~~~I~ts--------~~----~~ 100 (311)
T PLN02645 45 LIEGVPETLDMLRSMG---KKLVFVTNNSTKSRAQYGKKFESLGLNV--------T-EEEIFSS--------SF----AA 100 (311)
T ss_pred cCcCHHHHHHHHHHCC---CEEEEEeCCCCCCHHHHHHHHHHCCCCC--------C-hhhEeeh--------HH----HH
Confidence 3488999999999999 99999998721 223333445666421 0 0112221 11 22
Q ss_pred HHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 401 NDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 401 ~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
..++...+.. ....||++++.+|...+..+++
T Consensus 101 ~~~l~~~~~~-~~~~V~viG~~~~~~~l~~~Gi 132 (311)
T PLN02645 101 AAYLKSINFP-KDKKVYVIGEEGILEELELAGF 132 (311)
T ss_pred HHHHHhhccC-CCCEEEEEcCHHHHHHHHHCCC
Confidence 2222221111 1235888888889999888875
No 186
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=81.65 E-value=1.2 Score=49.03 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=36.3
Q ss_pred CChhhhHHHHHHHHhhcCCCCCceEE-EEcCCcccHHHHHhcCccEEEcCCc
Q 010855 391 ESPLEKLQAFNDILKDHSNDEQNLTV-YIGGSPGDLLCLLEADIGIVIGSSS 441 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~~~~~~~vI-yiGDs~tDl~~l~~Adigiv~~~~~ 441 (499)
.....|.++++.+.++ .+++ ..|||+||-++|+.||+||++.+..
T Consensus 568 VfpehKy~iV~~Lq~r------~hi~gmtgdgvndapaLKkAdigiava~at 613 (942)
T KOG0205|consen 568 VFPEHKYEIVKILQER------KHIVGMTGDGVNDAPALKKADIGIAVADAT 613 (942)
T ss_pred cCHHHHHHHHHHHhhc------CceecccCCCcccchhhcccccceeeccch
Confidence 3457799999887753 3444 7999999999999999999998753
No 187
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=81.47 E-value=1.1 Score=43.16 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred ce-EEEEcCCcccHHHHHhcCccEEEcC
Q 010855 413 NL-TVYIGGSPGDLLCLLEADIGIVIGS 439 (499)
Q Consensus 413 ~~-vIyiGDs~tDl~~l~~Adigiv~~~ 439 (499)
.+ ++.+|||.||++|+...|..+++..
T Consensus 209 ~r~t~~~GDg~nD~Pl~ev~d~AfiV~~ 236 (274)
T COG3769 209 ARTTLGLGDGPNDAPLLEVMDYAFIVKG 236 (274)
T ss_pred eeEEEecCCCCCcccHHHhhhhheeecc
Confidence 44 6789999999999999998888763
No 188
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=81.13 E-value=26 Score=34.64 Aligned_cols=144 Identities=15% Similarity=0.051 Sum_probs=89.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhCCCCCC--CC-CCChhhHHHHHHHHHHh-cCCccccc
Q 010855 7 PSLSHDEEDKLAIRKLRKRVKQK---------LKTLDSLVREWGFELPE--EI-ITDDATVKCTDFLLSTA-SGKVEGEK 73 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~~i~~E---------~~~h~~~~~~~g~~~~~--~~-~~~~~~~~Yt~~l~~~a-~~~~~~~~ 73 (499)
.|+++|.+.++.+ ++.+.+| .++...|.+..|++.++ +. ...|.|+..++-....+ ..++
T Consensus 67 ~S~c~D~e~Rr~w---~~ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~lP~tr~aVday~~~~r~~~~---- 139 (246)
T PRK05157 67 LSNCPDRETRREW---RQRILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGVLPGVRFAVDAYVNFARRAPW---- 139 (246)
T ss_pred HHcCCCHHHHHHH---HHHHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccCChHHHHHHHHHHHHHccCCH----
Confidence 5889998887655 3444432 56888999999999875 33 47899999998877777 4665
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHH-------HHHHHHHHH
Q 010855 74 VLGKIETPFEKIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQES-------ALQTEELLD 146 (499)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~-------~~~~~~~ld 146 (499)
.+++++++. ..---.|.+.-.+... ..| .||+.=+=.-|..- +....+++-
T Consensus 140 ---------------~eavas~lt-E~~~P~I~~~ri~gl~-----~~Y-~~~~~e~l~yF~~h~~~a~~Dvehal~~~l 197 (246)
T PRK05157 140 ---------------LEAVASSLT-ELFAPQIHQERLAGWP-----EHY-PWIDPEGLAYFRSRLTQAPRDVEHGLAYVL 197 (246)
T ss_pred ---------------HHHHHHHHH-HHhhhHHHHHHHHHHH-----HHC-CCCCHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 567887776 4333333222221111 123 46654221222111 111222222
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 010855 147 KLSVLLTGEELEVIKKLYYKAIKLHVNFFAAQPVK 181 (499)
Q Consensus 147 ~l~~~~~~~e~~~~~~~F~~a~~lE~~Fw~~a~~~ 181 (499)
+.+ .|+++++++.++-+..|..=|.|+|+-+..
T Consensus 198 ~~~--~t~e~q~~al~al~~k~d~Lw~~LDai~~a 230 (246)
T PRK05157 198 DHA--TTREQQERALEALQFKLDVLWSMLDALYMA 230 (246)
T ss_pred HHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 366889999999999999999999988764
No 189
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=81.04 E-value=1.6 Score=50.78 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=31.1
Q ss_pred ChhhhHHHHHHHHhh---cCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 392 SPLEKLQAFNDILKD---HSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~---~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
.+.+|...++.+++. .+. ....++++||+.||..|+..++
T Consensus 759 ~gvnKG~Al~~Ll~~~~~~g~-~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 759 QGVSKGLVAKRLLSIMQERGM-LPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CcccEEEEcCCccHHHHHHHhh
Confidence 356899999988743 222 2457899999999999999885
No 190
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=80.53 E-value=32 Score=33.77 Aligned_cols=143 Identities=15% Similarity=0.066 Sum_probs=88.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhCCCCCC--CCC-CChhhHHHHHHHHHHh-cCCccccc
Q 010855 7 PSLSHDEEDKLAIRKLRKRVKQK---------LKTLDSLVREWGFELPE--EII-TDDATVKCTDFLLSTA-SGKVEGEK 73 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~~i~~E---------~~~h~~~~~~~g~~~~~--~~~-~~~~~~~Yt~~l~~~a-~~~~~~~~ 73 (499)
-|+++|.+.++.+. +.+.+| .++-..|.+..|++.++ +.. ..|.|+..++=....+ ..++
T Consensus 60 ~s~c~D~e~Rr~wl---~ri~DhdG~~~~~ggie~WlrfaealGl~re~v~s~~~~lP~trfaVday~~f~r~~~~---- 132 (239)
T TIGR02111 60 LARCPDPQLRRIWR---QRILDHDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGVLPGTRFAVDAYVHFVREKSL---- 132 (239)
T ss_pred HHcCCCHHHHHHHH---HHHHHhcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCCCHHHHHHHHHHHHHHhcCCH----
Confidence 47899988776653 444432 56888999999999874 333 4799987777666665 4665
Q ss_pred ccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHH-HHH-------H
Q 010855 74 VLGKIETPFEKIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQT-EEL-------L 145 (499)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~-~~~-------l 145 (499)
.++++|++. ...--.|.+.-.+... ..| .||+.=+=.-|..-..+- .++ +
T Consensus 133 ---------------~eavasslT-E~f~P~I~~~ri~gl~-----~~Y-~~~~~e~l~yF~~r~~qa~rd~e~~l~~~l 190 (239)
T TIGR02111 133 ---------------LEAIASSLT-ELFAPQIHSERVAGML-----QHY-DFIDDAALAYFRKRLTQAPRDVEFGLDYVL 190 (239)
T ss_pred ---------------HHHHHHHHH-HHHhHHHHHHHHHhHH-----HHC-CCCCHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 468888776 4433333332221111 123 576643223343322221 222 3
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 010855 146 DKLSVLLTGEELEVIKKLYYKAIKLHVNFFAAQPVK 181 (499)
Q Consensus 146 d~l~~~~~~~e~~~~~~~F~~a~~lE~~Fw~~a~~~ 181 (499)
+.+ .|.++++++.++-+..|..=|.|+|+-+..
T Consensus 191 ~~~---~t~e~Q~~~l~al~fk~dvLw~~LDal~~a 223 (239)
T TIGR02111 191 DHA---TTREKQEAALEALTFKCDVLWAQLDALYFA 223 (239)
T ss_pred HHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 366888899999999999999999987664
No 191
>PTZ00445 p36-lilke protein; Provisional
Probab=79.06 E-value=13 Score=35.95 Aligned_cols=113 Identities=11% Similarity=0.141 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccCC--------------hHHHHHHHHcCCCC--ceEEEeeceEe-eC-Ceee
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--------------GDLIRSAFASGDLN--AFRVHSNELVY-EE-SIST 383 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--------------~~~I~~~L~~~gl~--~~~I~aN~l~~-~~-g~~t 383 (499)
.++|.|..+++.+++.| +++.||+-+=- .++|+..|+..+.+ ...|+|=...| ++ ..|.
T Consensus 75 ~~tpefk~~~~~l~~~~---I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~ 151 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSN---IKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYR 151 (219)
T ss_pred cCCHHHHHHHHHHHHCC---CeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhh
Confidence 46788999999999999 99999875411 22778888754332 22344432221 11 1111
Q ss_pred c-cccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc-cEEEcCC
Q 010855 384 G-EIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI-GIVIGSS 440 (499)
Q Consensus 384 G-~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi-giv~~~~ 440 (499)
. .+.. +....|.-.|+++++..+.. +.++++|=|+..-+.++...|+ ++.+.+.
T Consensus 152 ~~gl~K--Pdp~iK~yHle~ll~~~gl~-peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 152 PLGLDA--PMPLDKSYHLKQVCSDFNVN-PDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred hhcccC--CCccchHHHHHHHHHHcCCC-HHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 1 0111 12234555668888887774 6899999999999999999997 6666543
No 192
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=79.00 E-value=8.6 Score=37.73 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=75.4
Q ss_pred CCCHHHHHHHhh--cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHH----HHHHHHcCCCCceEEEeeceEeeCCe
Q 010855 308 GLNLEDIKWASQ--HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDL----IRSAFASGDLNAFRVHSNELVYEESI 381 (499)
Q Consensus 308 Gi~~~~l~~~~~--~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~----I~~~L~~~gl~~~~I~aN~l~~~~g~ 381 (499)
|.+.+....+++ ....-||+.+|++...++| ..++-||.- +.+- ...-|.+.|++... =-.+.+.
T Consensus 106 ~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~G---g~ifyiSNR-~~~~~~~~T~~nLk~~g~~~~~--~~~~llk--- 176 (274)
T COG2503 106 GFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNG---GKIFYISNR-DQENEKDGTIENLKSEGLPQVL--ESHLLLK--- 176 (274)
T ss_pred CCCccchHHHHhhcccccCccHHHHHHHHHhcC---cEEEEEecc-chhcccchhHHHHHHcCccccc--ccceEEe---
Confidence 455666677654 5677899999999999999 888888863 1221 11223444553221 0011111
Q ss_pred eeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC-CchHHhhhhhhCCcccccc
Q 010855 382 STGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS-SSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 382 ~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~-~~~L~~~~~~~gi~~~p~~ 458 (499)
.....|..+.+.+... ...|++|||...|+.-....+ .-.. ..-+.+..+.||-.|+-+-
T Consensus 177 ---------k~~k~Ke~R~~~v~k~-----~~iVm~vGDNl~DF~d~~~k~---~~~eR~Alv~~~~~~FGk~~Ii~p 237 (274)
T COG2503 177 ---------KDKKSKEVRRQAVEKD-----YKIVMLVGDNLDDFGDNAYKK---AEAERRALVKQNQKKFGKKFIILP 237 (274)
T ss_pred ---------eCCCcHHHHHHHHhhc-----cceeeEecCchhhhcchhhhh---hhHHHHHHHHHHHHHhCceEEEec
Confidence 1122466665555542 345669999999998776665 2111 1357788889998877554
No 193
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=77.16 E-value=1.4 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=18.9
Q ss_pred CceEEEEeCCcccccccchHHHH
Q 010855 197 GHLTLFCDFDWTCTAFDSSSILA 219 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT~~~la 219 (499)
...+||+|.|||||+.|.+.-+.
T Consensus 529 n~kIVISDIDGTITKSDvLGh~l 551 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVL 551 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhh
Confidence 34489999999999999877554
No 194
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=76.34 E-value=12 Score=34.27 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEec--cCCh-----------HHHHHHHHcCCCCceEEEeeceEeeCCeeeccccc
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSY--CWCG-----------DLIRSAFASGDLNAFRVHSNELVYEESISTGEIVN 388 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~--g~s~-----------~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~ 388 (499)
.+.|++.+.|+.+.+.| ..++|||- |.+. .-|..+++..+++ +.+++-.- . ..+..
T Consensus 29 ~~~~~v~~~L~~l~~~G---y~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip-~~~~~a~~-~------d~~RK 97 (159)
T PF08645_consen 29 FFPPGVPEALRELHKKG---YKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP-IQVYAAPH-K------DPCRK 97 (159)
T ss_dssp EC-TTHHHHHHHHHHTT---EEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS--EEEEECGC-S------STTST
T ss_pred hcchhHHHHHHHHHhcC---CeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc-eEEEecCC-C------CCCCC
Confidence 34567888899999999 99999996 3222 2345556666654 33333211 0 11222
Q ss_pred cCCChhhhHHHHHHHHhhcCC---CCCceEEEEcCCccc
Q 010855 389 KLESPLEKLQAFNDILKDHSN---DEQNLTVYIGGSPGD 424 (499)
Q Consensus 389 ~~~~g~~K~~~l~~~~~~~~~---~~~~~vIyiGDs~tD 424 (499)
+ .+| .+..+..+.+. -...+++||||..+|
T Consensus 98 P-~~G-----M~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 98 P-NPG-----MWEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp T-SSH-----HHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred C-chh-----HHHHHHHhccccccccccceEEEeccCCC
Confidence 2 233 34444544432 124679999998666
No 195
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=75.82 E-value=24 Score=38.38 Aligned_cols=123 Identities=12% Similarity=0.024 Sum_probs=75.3
Q ss_pred hhhccCCCHHHHHHHhhcCC---CChh-HHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEee
Q 010855 303 SGVLKGLNLEDIKWASQHLI---FQDG-CRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYE 378 (499)
Q Consensus 303 ~~~f~Gi~~~~l~~~~~~i~---lr~G-~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~ 378 (499)
.--|.|+.+++++ .++.+. +-++ -.|-++..+.-+ +.++||. .-..++++.|+.+ +..+.|+..|++..
T Consensus 108 ~v~f~Gl~~~~~~-v~ravLPkf~~~dv~~e~~~v~~~~~----~~~vv~~-~PrvMve~Flkey-l~~d~V~g~El~~~ 180 (525)
T PLN02588 108 MLSFFGVKKESFR-AGKAVLPKYFLEDVGLEMFQVLKRGG----KRVGVSD-LPQVMIDVFLRDY-LEIEVVVGRDMKMV 180 (525)
T ss_pred HHhhcCCcHHHhh-hHHhhccHHHHhhcCHHHHHHHhhcC----cEEEEec-CCHHHHHHHHHHh-cCcceEeeeeEEEe
Confidence 4568899988776 555221 1112 133333333323 5667777 4466999999876 55688999999998
Q ss_pred CCeeeccccccCCChhhhHHHHHH-HHhhcCCCCCceEEEEcCC---cccHHHHHhcCccEEEc
Q 010855 379 ESISTGEIVNKLESPLEKLQAFND-ILKDHSNDEQNLTVYIGGS---PGDLLCLLEADIGIVIG 438 (499)
Q Consensus 379 ~g~~tG~~~~~~~~g~~K~~~l~~-~~~~~~~~~~~~vIyiGDs---~tDl~~l~~Adigiv~~ 438 (499)
.|.+||-+. +.+|.....+ +..+. .......+-+||+ .+|...+..+.-+.++.
T Consensus 181 ~g~~tG~~~-----~~~~~~~~~~~~~~~~-~~~~~~~vG~~~~~~~~~~~~f~~~CkE~y~v~ 238 (525)
T PLN02588 181 GGYYLGIME-----DKKKHELAFDKVVQEE-RLNSGRLIGITSFNSPSHRSLFSQFCQEIYFVR 238 (525)
T ss_pred eeEEEEEEc-----ccchHHHHHHHHhccc-CcccccceeecccCcccccchhHHhCcceEEeC
Confidence 889999655 3356555444 33221 1112347889998 78887775555444443
No 196
>CHL00168 pbsA heme oxygenase; Provisional
Probab=75.80 E-value=63 Score=31.79 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=60.9
Q ss_pred CCCCCCCCCCChhhHHHHHHHHHHhcCCcccccccccccchhhhhhhHHHHHHHHHH-HHHHH-HHH--HHHH----Hhh
Q 010855 41 GFELPEEIITDDATVKCTDFLLSTASGKVEGEKVLGKIETPFEKIKVAAYTLSAISP-CMRLF-EVI--AKEI----QAL 112 (499)
Q Consensus 41 g~~~~~~~~~~~~~~~Yt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~Al~P-C~~~Y-~~i--g~~~----~~~ 112 (499)
|-+..+...|+|++..|.+++..++..+. . ++.+ |+-.| ..+ |+-+ .+.
T Consensus 89 G~~w~~~~~p~pa~~~Yv~rI~~~~~~~P--------------------~---~LvAH~YvrYLGdlsGGQiI~k~l~r~ 145 (238)
T CHL00168 89 GDDWKSIIEPSPATKIYVDRIHKISAKKP--------------------E---LLIAHAYTRYLGDLSGGQILKKIAQRA 145 (238)
T ss_pred CCCccccCCCChHHHHHHHHHHHHhhcCh--------------------H---HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33333457889999999999999986543 2 3444 66667 322 3322 222
Q ss_pred cCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcC
Q 010855 113 LNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKLHVNFFA 176 (499)
Q Consensus 113 ~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~lE~~Fw~ 176 (499)
.... + ..--.+.+++.-++-...-....+.||++ .+++++++++.+-=..+-.+-..-|.
T Consensus 146 ~gl~-~-~~G~~Fy~F~~i~~~~~fk~~yr~~Ld~l--~l~e~e~~~iI~EA~~AF~lN~~vf~ 205 (238)
T CHL00168 146 MNLS-D-SGGLAFYDFDNIEDDQEFKQIYKAALDNL--PLSDDQIQNIIAEANIAFNLNMKMFQ 205 (238)
T ss_pred hCCC-C-CcCccccCCCCcCcHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1 11112333343234567777888888876 47787777665554444444444443
No 197
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=73.35 E-value=2.6 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.9
Q ss_pred CceEEEEeCCcccccccchHHHHHH
Q 010855 197 GHLTLFCDFDWTCTAFDSSSILAEL 221 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT~~~la~~ 221 (499)
.+-+||+|.|||||+.|-..-+-.+
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~m 398 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQM 398 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHH
Confidence 3459999999999999988655544
No 198
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=73.01 E-value=70 Score=31.33 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=89.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhCCCCCC--CCCCChhhHHHHHHHHHHhcCCccccccc
Q 010855 7 PSLSHDEEDKLAIRKLRKRVKQ---------KLKTLDSLVREWGFELPE--EIITDDATVKCTDFLLSTASGKVEGEKVL 75 (499)
Q Consensus 7 ~~~a~d~~~~~~~~~~~~~i~~---------E~~~h~~~~~~~g~~~~~--~~~~~~~~~~Yt~~l~~~a~~~~~~~~~~ 75 (499)
.++++|++..+...+ .+.+ =+++-..+...+|++.++ +..|.|.+..=...-...++++.
T Consensus 65 l~rcdd~~~r~~~le---ni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~~~av~~~~~~a~~~s------ 135 (242)
T COG5424 65 LARCDDDDVRREWLE---NIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPSTRFAVDTWVRFATEKS------ 135 (242)
T ss_pred HhcCCcHhHHHHHHH---HHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHHHHHHHHHHHHhcchh------
Confidence 578888877655433 3332 245666788889999875 55699999999999888886543
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCcchhcccccccCChhH--------HHHHHHHHHHHH
Q 010855 76 GKIETPFEKIKVAAYTLSAISPCMRLFEVIAKEIQ-ALLNPDDGSHLYKKWIDYYCSQSF--------QESALQTEELLD 146 (499)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~Al~PC~~~Y~~ig~~~~-~~~~~~~~~~~Y~~WI~~y~s~~f--------~~~~~~~~~~ld 146 (499)
..+++++|+. |--.+-++. .... +-+-|..|++ +..-.| ..=+...++++.
T Consensus 136 ------------~~~~~aslyt----~El~apri~~~ki~---gl~~~~~~~~-~a~~~yf~~h~eaD~~Ha~Ealkiv~ 195 (242)
T COG5424 136 ------------WLEGAASLYT----YELVAPRISVEKIS---GLPYFNGFSD-AAAYAYFREHLEADVRHAEEALKIVL 195 (242)
T ss_pred ------------HHHHHHHHHH----HHhhccHHHHHHcc---CchhhcCcch-HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 2567777654 333333332 2222 2344555664 221111 223444456666
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 010855 147 KLSVLLTGEELEVIKKLYYKAIKLHVNFFAAQPVK 181 (499)
Q Consensus 147 ~l~~~~~~~e~~~~~~~F~~a~~lE~~Fw~~a~~~ 181 (499)
+++. +-|..+++.++-.+++..=|.|-|+....
T Consensus 196 ~~~~--t~E~~~~~~~~~~~~~D~lw~fLda~~~~ 228 (242)
T COG5424 196 ELAG--TRELQDQVLDALQKSLDVLWLFLDARMQA 228 (242)
T ss_pred HHHh--chhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6653 24567788888999999999998877553
No 199
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=71.92 E-value=27 Score=39.56 Aligned_cols=18 Identities=17% Similarity=-0.005 Sum_probs=14.6
Q ss_pred CceEEEEeCCcccccccc
Q 010855 197 GHLTLFCDFDWTCTAFDS 214 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~DT 214 (499)
.+.+|++|+||||+..|.
T Consensus 415 ~~KLIfsDLDGTLLd~d~ 432 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLT 432 (694)
T ss_pred eeeEEEEECcCCCcCCCC
Confidence 455999999999997544
No 200
>PRK10444 UMP phosphatase; Provisional
Probab=71.62 E-value=6.7 Score=38.67 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=33.9
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
|.-+...+...++..+.+ ..++++|||+. +|+.+...+++ .+.+..
T Consensus 173 gKP~~~~~~~~~~~~~~~-~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~ 220 (248)
T PRK10444 173 GKPSPWIIRAALNKMQAH-SEETVIVGDNLRTDILAGFQAGLETILVLS 220 (248)
T ss_pred CCCCHHHHHHHHHHcCCC-cccEEEECCCcHHHHHHHHHcCCCEEEECC
Confidence 434556777777665542 57899999996 99999999998 555544
No 201
>PLN03017 trehalose-phosphatase
Probab=70.36 E-value=5.6 Score=41.56 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=35.1
Q ss_pred ChhhhHHHHHHHHhhcCCCC--CceEEEEcCCcccHHHHHhc-----CccEEEc
Q 010855 392 SPLEKLQAFNDILKDHSNDE--QNLTVYIGGSPGDLLCLLEA-----DIGIVIG 438 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~--~~~vIyiGDs~tDl~~l~~A-----digiv~~ 438 (499)
.+.+|-.+++.++...+... ....||+||-.||-.+++.. ++||.++
T Consensus 280 ~~~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 280 IEWDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred CCCCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEEC
Confidence 35689999999997654221 23578999999999998865 3577777
No 202
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=69.94 E-value=21 Score=34.04 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=34.0
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCC
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL 365 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl 365 (499)
...|||+.+|++.+.++ .+++|.|++ +..++..++...++
T Consensus 44 ~~kRP~l~eFL~~~~~~----feIvVwTAa-~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 44 ELMRPYLHEFLTSAYED----YDIVIWSAT-SMKWIEIKMTELGV 83 (195)
T ss_pred EEeCCCHHHHHHHHHhC----CEEEEEecC-CHHHHHHHHHHhcc
Confidence 46899999999999985 799999998 57899998887543
No 203
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=69.92 E-value=9.4 Score=32.08 Aligned_cols=42 Identities=7% Similarity=-0.067 Sum_probs=30.3
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEecc--CChHHHHHHHHcCCCC
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYC--WCGDLIRSAFASGDLN 366 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g--~s~~~I~~~L~~~gl~ 366 (499)
.+-||+.++++.++++| .++++||.+ .+..-+...|+..|++
T Consensus 14 ~~ipga~e~l~~L~~~g---~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 14 EPIPGAVEALDALRERG---KPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp EE-TTHHHHHHHHHHTT---SEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCcCHHHHHHHHHHcC---CCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 45689999999999999 999999987 3323444455777764
No 204
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=69.17 E-value=2.7 Score=41.18 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.1
Q ss_pred CceEEEEeCCccccc
Q 010855 197 GHLTLFCDFDWTCTA 211 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~ 211 (499)
++.++++||||||+.
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 467899999999996
No 205
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=67.19 E-value=8.7 Score=37.93 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=40.6
Q ss_pred hcCccEEEcCCchHHhhhhhhCCccccccchHHHHHHHhhcCCCccccccCCEEEEEcCHHHHHHhh
Q 010855 430 EADIGIVIGSSSSLRRLGDHFGVSFVPLFSSLVERQKELVDGSSYKWKRLPGTLYTVSSWAEIHAFI 496 (499)
Q Consensus 430 ~Adigiv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~ly~~~~W~~i~~~~ 496 (499)
.|.++.+..-+.+..+.|++.||||+.|+ .+.|..++-..+.|+||.|..+.+
T Consensus 72 DATHPyAa~iS~Na~~aake~gipy~r~e--------------RP~~~~~gd~~~~V~d~~ea~~~~ 124 (257)
T COG2099 72 DATHPYAARISQNAARAAKETGIPYLRLE--------------RPPWAPNGDNWIEVADIEEAAEAA 124 (257)
T ss_pred ECCChHHHHHHHHHHHHHHHhCCcEEEEE--------------CCccccCCCceEEecCHHHHHHHH
Confidence 34444443345689999999999999997 677777734899999999987654
No 206
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=67.16 E-value=21 Score=30.19 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=43.7
Q ss_pred cEEEEecc-CC-hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcC
Q 010855 343 DVHVLSYC-WC-GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGG 420 (499)
Q Consensus 343 ~~~IVS~g-~s-~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD 420 (499)
|++=||.+ |. -.+++..++.++++.-.++-..+ ++..++-+.. ....-|...|++++.... ..+.|.|||
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~G~~~Lr~~---~~~~~~~~~~--~~~~~K~~~i~~i~~~fP---~~kfiLIGD 72 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPAGPLLLRDY---GPSLSGLFKS--GAEEHKRDNIERILRDFP---ERKFILIGD 72 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCCCceEcccC---CccccccccC--CchhHHHHHHHHHHHHCC---CCcEEEEee
Confidence 35556664 21 23677777777776555554444 1112222211 111469999999998753 357899999
Q ss_pred Cc-ccHH
Q 010855 421 SP-GDLL 426 (499)
Q Consensus 421 s~-tDl~ 426 (499)
|. .|.+
T Consensus 73 sgq~Dpe 79 (100)
T PF09949_consen 73 SGQHDPE 79 (100)
T ss_pred CCCcCHH
Confidence 74 5644
No 207
>PLN02151 trehalose-phosphatase
Probab=66.90 E-value=7.1 Score=40.63 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=34.5
Q ss_pred ChhhhHHHHHHHHhhcCCCCC--ceEEEEcCCcccHHHHHhc-----CccEEEc
Q 010855 392 SPLEKLQAFNDILKDHSNDEQ--NLTVYIGGSPGDLLCLLEA-----DIGIVIG 438 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~--~~vIyiGDs~tDl~~l~~A-----digiv~~ 438 (499)
.+.+|-..++.++...+.... .-++|+||-.||-.|+... |+||.++
T Consensus 266 ~~~dKG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg 319 (354)
T PLN02151 266 IKWDKGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVS 319 (354)
T ss_pred CCCCHHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEec
Confidence 356899999999876543211 2478999999999998754 5667776
No 208
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=65.84 E-value=5.3 Score=45.72 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.8
Q ss_pred CceEEEEeCCcccccc
Q 010855 197 GHLTLFCDFDWTCTAF 212 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~ 212 (499)
++.+|++||||||+..
T Consensus 491 ~~rLi~~D~DGTL~~~ 506 (726)
T PRK14501 491 SRRLLLLDYDGTLVPF 506 (726)
T ss_pred cceEEEEecCccccCC
Confidence 4679999999999974
No 209
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=64.09 E-value=7.5 Score=35.07 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=31.2
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCC
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGD 364 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~g 364 (499)
.+.+|||+.+|++++.+. ..++|.|.+ +..+.+.++....
T Consensus 34 ~v~~RP~l~~FL~~l~~~----~ev~i~T~~-~~~ya~~v~~~ld 73 (159)
T PF03031_consen 34 YVKLRPGLDEFLEELSKH----YEVVIWTSA-SEEYAEPVLDALD 73 (159)
T ss_dssp EEEE-TTHHHHHHHHHHH----CEEEEE-SS--HHHHHHHHHHHT
T ss_pred eEeeCchHHHHHHHHHHh----ceEEEEEee-hhhhhhHHHHhhh
Confidence 467899999999999765 799999999 5888998887643
No 210
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=63.89 E-value=80 Score=33.35 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=74.3
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-
Q 010855 309 LNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV- 387 (499)
Q Consensus 309 i~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~- 387 (499)
++.+++.++.+++.+..=-.+-.+.+++ ..+.||-.|--+-.+-..|...|+..+.++=++..-..+ +.-++.
T Consensus 15 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~-----~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sN-L~Rq~l~ 88 (392)
T PRK07878 15 LTRDEVARYSRHLIIPDVGVDGQKRLKN-----ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESN-LQRQVIH 88 (392)
T ss_pred CCHHHHHHhhheechhhcCHHHHHHHhc-----CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcc-ccccccc
Confidence 5667777777665442212344455544 457777766434455556666677655554433322111 111111
Q ss_pred ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCc---ccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 388 NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSP---GDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 388 ~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~---tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
.....|..|+....+.+...+. .-++..+-... ++...+..+| +++.. + -.+-++|.+.++|++
T Consensus 89 ~~~diG~~Ka~~a~~~l~~~np--~v~i~~~~~~i~~~~~~~~~~~~D--~Vvd~~d~~~~r~~ln~~~~~~~~p~v 161 (392)
T PRK07878 89 GQSDVGRSKAQSARDSIVEINP--LVNVRLHEFRLDPSNAVELFSQYD--LILDGTDNFATRYLVNDAAVLAGKPYV 161 (392)
T ss_pred ChhcCCChHHHHHHHHHHHhCC--CcEEEEEeccCChhHHHHHHhcCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 2223466799888777765543 23443443333 3345566777 45543 2 246788999999876
No 211
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=63.66 E-value=4.8 Score=37.97 Aligned_cols=42 Identities=33% Similarity=0.463 Sum_probs=35.1
Q ss_pred EEcCCcccHHHHHhcC-c-cEEEcCCchHHhhhhhhCCcccccc
Q 010855 417 YIGGSPGDLLCLLEAD-I-GIVIGSSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 417 yiGDs~tDl~~l~~Ad-i-giv~~~~~~L~~~~~~~gi~~~p~~ 458 (499)
-+=||.-|+..|+.|- + |.++.++..+.+++++.|++|++-.
T Consensus 157 GiLDSapDlDvLLLAkELdaavVssD~Gir~WAe~LGlrfv~a~ 200 (221)
T COG1458 157 GILDSAPDLDVLLLAKELDAAVVSSDEGIRTWAEKLGLRFVDAF 200 (221)
T ss_pred ccccccchhHHHHHHHHhCceEEecchhHHHHHHHhCCeeeCHh
Confidence 3559999999888874 2 6777888889999999999999764
No 212
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=63.44 E-value=13 Score=36.51 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 395 EKLQAFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 395 ~K~~~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
-+...++..++..+.+ ..++++|||+. +|+.++..+++ .|++..
T Consensus 179 P~~~~~~~~~~~~~~~-~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~ 224 (249)
T TIGR01457 179 PNAIIMEKAVEHLGTE-REETLMVGDNYLTDIRAGIDAGIDTLLVHT 224 (249)
T ss_pred ChHHHHHHHHHHcCCC-cccEEEECCCchhhHHHHHHcCCcEEEEcC
Confidence 3456777777766553 57899999996 99999999998 455544
No 213
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=63.30 E-value=4.9 Score=40.02 Aligned_cols=15 Identities=27% Similarity=0.374 Sum_probs=13.5
Q ss_pred CceEEEEeCCccccc
Q 010855 197 GHLTLFCDFDWTCTA 211 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~ 211 (499)
.+.+|++||||||+.
T Consensus 13 ~~~li~~D~DGTLl~ 27 (266)
T PRK10187 13 ANYAWFFDLDGTLAE 27 (266)
T ss_pred CCEEEEEecCCCCCC
Confidence 468999999999997
No 214
>COG4996 Predicted phosphatase [General function prediction only]
Probab=63.02 E-value=26 Score=31.20 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=32.9
Q ss_pred CHHHHHHH-hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChH-HHHHHHHcCCC
Q 010855 310 NLEDIKWA-SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGD-LIRSAFASGDL 365 (499)
Q Consensus 310 ~~~~l~~~-~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~-~I~~~L~~~gl 365 (499)
+...++.- +..+.|+|.++++++|++..| .- |-+.+|..+ -.-.+|+..++
T Consensus 28 s~n~i~Ds~G~ev~L~~~v~~~l~warnsG---~i--~~~~sWN~~~kA~~aLral~~ 80 (164)
T COG4996 28 SSNTIEDSKGREVHLFPDVKETLKWARNSG---YI--LGLASWNFEDKAIKALRALDL 80 (164)
T ss_pred CccceecCCCeEEEEcHHHHHHHHHHHhCC---cE--EEEeecCchHHHHHHHHHhch
Confidence 33444443 557899999999999999988 43 444455433 33345666554
No 215
>PLN02645 phosphoglycolate phosphatase
Probab=62.91 E-value=11 Score=38.33 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=31.5
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
+...++..++..+.+ ..++++|||+. +|+.+.+.+++ .|++..
T Consensus 232 ~p~~~~~a~~~~~~~-~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~ 276 (311)
T PLN02645 232 STFMMDYLANKFGIE-KSQICMVGDRLDTDILFGQNGGCKTLLVLS 276 (311)
T ss_pred hHHHHHHHHHHcCCC-cccEEEEcCCcHHHHHHHHHcCCCEEEEcC
Confidence 345666666655543 57899999997 99999999997 455543
No 216
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=62.06 E-value=3.9 Score=38.47 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=11.9
Q ss_pred EEEEeCCccccccc
Q 010855 200 TLFCDFDWTCTAFD 213 (499)
Q Consensus 200 ~ii~DFD~TIT~~D 213 (499)
+|++|+||||+..+
T Consensus 1 li~~D~DgTL~~~~ 14 (204)
T TIGR01484 1 LLFFDLDGTLLDPN 14 (204)
T ss_pred CEEEeCcCCCcCCC
Confidence 58999999999754
No 217
>PLN02580 trehalose-phosphatase
Probab=61.62 E-value=4.6 Score=42.54 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=13.4
Q ss_pred CceEEEEeCCccccc
Q 010855 197 GHLTLFCDFDWTCTA 211 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~ 211 (499)
+++++++||||||+.
T Consensus 118 k~~~LfLDyDGTLaP 132 (384)
T PLN02580 118 KKIALFLDYDGTLSP 132 (384)
T ss_pred CCeEEEEecCCccCC
Confidence 577999999999996
No 218
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=61.09 E-value=84 Score=32.92 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=69.7
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-
Q 010855 309 LNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV- 387 (499)
Q Consensus 309 i~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~- 387 (499)
++.+++.++.+++.+..=-.+-.+.+++ .++.||-.|...-.|-..|...|+..+.++=....-..+ +.-++.
T Consensus 108 ~s~~~~~~y~r~i~l~~~g~~~q~~l~~-----~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sN-l~Rq~l~ 181 (376)
T PRK08762 108 LTDEQDERYSRHLRLPEVGEEGQRRLLE-----ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSN-LQRQILH 181 (376)
T ss_pred CCHHHHHHHHHhcchhhcCHHHHHHHhc-----CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchh-hcccccc
Confidence 4555666666665442211223334432 467888766445566666777777655554333211111 111111
Q ss_pred ccCCChhhhHHHHHHHHhhcCCCCCceEEEE---cCCcccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 388 NKLESPLEKLQAFNDILKDHSNDEQNLTVYI---GGSPGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 388 ~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyi---GDs~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
.....|..|+..+.+.+...+.. -++..+ -++.+....+..+| +++.. + ..+-++|.+.++|++
T Consensus 182 ~~~diG~~Ka~~~~~~l~~~np~--v~v~~~~~~~~~~~~~~~~~~~D--~Vv~~~d~~~~r~~ln~~~~~~~ip~i 254 (376)
T PRK08762 182 TEDRVGQPKVDSAAQRLAALNPD--VQVEAVQERVTSDNVEALLQDVD--VVVDGADNFPTRYLLNDACVKLGKPLV 254 (376)
T ss_pred chhhCCCcHHHHHHHHHHHHCCC--CEEEEEeccCChHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 11223567888877766554331 222222 12223333456677 45543 2 146788999999976
No 219
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=59.13 E-value=5.5 Score=39.78 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcC
Q 010855 393 PLEKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEAD 432 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Ad 432 (499)
+..|...++.+.+....+ +.-+++.||-.||=.++....
T Consensus 180 ~~~KG~a~~~i~~~~~~~-~~~~~~aGDD~TDE~~F~~v~ 218 (266)
T COG1877 180 GVSKGAAIKYIMDELPFD-GRFPIFAGDDLTDEDAFAAVN 218 (266)
T ss_pred CcchHHHHHHHHhcCCCC-CCcceecCCCCccHHHHHhhc
Confidence 444999999888765432 235789999999999988876
No 220
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=59.10 E-value=13 Score=37.15 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=29.3
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCC-cccHHHHHhcCc-cEEEc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGS-PGDLLCLLEADI-GIVIG 438 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l~~Adi-giv~~ 438 (499)
..+...+...+.. ..++++|||+ .+|+.++..+++ .|.+.
T Consensus 206 ~~~~~~~~~~~~~-~~~~lmIGD~~~tDI~~A~~aGi~si~V~ 247 (279)
T TIGR01452 206 YMFECITENFSID-PARTLMVGDRLETDILFGHRCGMTTVLVL 247 (279)
T ss_pred HHHHHHHHHhCCC-hhhEEEECCChHHHHHHHHHcCCcEEEEC
Confidence 4555555555443 5789999999 599999999997 45553
No 221
>PLN02423 phosphomannomutase
Probab=59.09 E-value=6 Score=38.87 Aligned_cols=17 Identities=29% Similarity=0.110 Sum_probs=14.2
Q ss_pred CceEEEEeCCccccccc
Q 010855 197 GHLTLFCDFDWTCTAFD 213 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~D 213 (499)
++.++++|+||||...|
T Consensus 6 ~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 6 PGVIALFDVDGTLTAPR 22 (245)
T ss_pred cceEEEEeccCCCcCCC
Confidence 56788899999999754
No 222
>PLN02151 trehalose-phosphatase
Probab=58.64 E-value=5.9 Score=41.22 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=13.5
Q ss_pred CceEEEEeCCccccc
Q 010855 197 GHLTLFCDFDWTCTA 211 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~ 211 (499)
+++++++||||||+.
T Consensus 97 ~~~ll~lDyDGTL~P 111 (354)
T PLN02151 97 KQIVMFLDYDGTLSP 111 (354)
T ss_pred CceEEEEecCccCCC
Confidence 678999999999994
No 223
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=58.55 E-value=5.3 Score=37.33 Aligned_cols=16 Identities=25% Similarity=0.250 Sum_probs=13.7
Q ss_pred CceEEEEeCCcccccc
Q 010855 197 GHLTLFCDFDWTCTAF 212 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~ 212 (499)
...+|++|+|||||..
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4559999999999975
No 224
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=58.45 E-value=12 Score=34.28 Aligned_cols=42 Identities=12% Similarity=0.047 Sum_probs=35.3
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCC
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL 365 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl 365 (499)
..+.+|||+.+|++.+.+ + .+++|++.+ +..+...+++..+.
T Consensus 55 ~~v~~rPgv~efL~~l~~-~---yel~I~T~~-~~~yA~~vl~~ldp 96 (156)
T TIGR02250 55 YLTKLRPFLHEFLKEASK-L---YEMHVYTMG-TRAYAQAIAKLIDP 96 (156)
T ss_pred EEEEECCCHHHHHHHHHh-h---cEEEEEeCC-cHHHHHHHHHHhCc
Confidence 357899999999999984 4 799999999 58899999987653
No 225
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=58.16 E-value=1.2e+02 Score=29.74 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=70.8
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-
Q 010855 309 LNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV- 387 (499)
Q Consensus 309 i~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~- 387 (499)
++.++++++.+++.++.=-.+--+.+++ .++.||-.|--+-.+-..|...|+..+.++=.+..-..+ +.-++.
T Consensus 5 l~~~~~~rY~Rqi~l~~~g~~~Q~~L~~-----~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN-L~Rq~l~ 78 (245)
T PRK05690 5 LSDEEMLRYNRQIILRGFDFDGQEKLKA-----ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSN-LQRQVLH 78 (245)
T ss_pred CCHHHHHHHHHhccchhcCHHHHHHhcC-----CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcch-hhhhhcC
Confidence 4666777777776554311222334433 467777665223444555555676655554333221111 111111
Q ss_pred ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCccc---HHHHHhcCccEEEcC-C-----chHHhhhhhhCCcccc
Q 010855 388 NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSPGD---LLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVP 456 (499)
Q Consensus 388 ~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~tD---l~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p 456 (499)
.....|..|+..+.+.+...+.. -++..+-...+. ...+...| +++.. + ..+.++|.+.++|++-
T Consensus 79 ~~~dvG~~Ka~~a~~~l~~lnp~--v~i~~~~~~i~~~~~~~~~~~~D--iVi~~~D~~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 79 DDATIGQPKVESARAALARINPH--IAIETINARLDDDELAALIAGHD--LVLDCTDNVATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred ChhhCCChHHHHHHHHHHHHCCC--CEEEEEeccCCHHHHHHHHhcCC--EEEecCCCHHHHHHHHHHHHHhCCEEEE
Confidence 11233567998887777655432 344444333322 23455677 45543 2 2477889999998763
No 226
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=58.00 E-value=6 Score=38.92 Aligned_cols=15 Identities=27% Similarity=0.071 Sum_probs=12.7
Q ss_pred CceEEEEeCCccccc
Q 010855 197 GHLTLFCDFDWTCTA 211 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~ 211 (499)
++.++++|||+|++.
T Consensus 1 ~~~ll~sDlD~Tl~~ 15 (247)
T PF05116_consen 1 PPRLLASDLDGTLID 15 (247)
T ss_dssp -SEEEEEETBTTTBH
T ss_pred CCEEEEEECCCCCcC
Confidence 367999999999993
No 227
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=57.10 E-value=45 Score=33.46 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=28.5
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccC--ChHHHHHHHHc
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCW--CGDLIRSAFAS 362 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~--s~~~I~~~L~~ 362 (499)
..-||+.++++.++++| .+++.||.|= ++..+...|+.
T Consensus 24 ~~ipga~e~l~~L~~~g---~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 24 EAIPGAAEALKRLKAAG---KPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred ccCchHHHHHHHHHHcC---CeEEEEeCCCCCCHHHHHHHHHh
Confidence 45689999999999999 9999999873 23334444554
No 228
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=57.04 E-value=16 Score=35.45 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=28.4
Q ss_pred hhHHHHHHHHhhcCCCCCceE-EEEcCCc-ccHHHHHhcCcc
Q 010855 395 EKLQAFNDILKDHSNDEQNLT-VYIGGSP-GDLLCLLEADIG 434 (499)
Q Consensus 395 ~K~~~l~~~~~~~~~~~~~~v-IyiGDs~-tDl~~l~~Adig 434 (499)
-+...++...+..+.. ..++ ++|||+. +|+.++..+++.
T Consensus 189 P~~~~~~~~~~~~~~~-~~~~~~~IGD~~~~Di~~A~~~G~~ 229 (236)
T TIGR01460 189 PSPAIYRAALNLLQAR-PERRDVMVGDNLRTDILGAKNAGFD 229 (236)
T ss_pred CCHHHHHHHHHHhCCC-CccceEEECCCcHHHHHHHHHCCCc
Confidence 3456666666655443 3455 8999998 899999999973
No 229
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=57.04 E-value=6.3 Score=38.51 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=12.6
Q ss_pred ceEEEEeCCccccc
Q 010855 198 HLTLFCDFDWTCTA 211 (499)
Q Consensus 198 ~~~ii~DFD~TIT~ 211 (499)
+++|++|+|||+..
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 46899999999997
No 230
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=57.02 E-value=6 Score=45.79 Aligned_cols=41 Identities=15% Similarity=-0.024 Sum_probs=27.8
Q ss_pred ChhhhHHHHHHHHhhcC-----CCCCceEEEEcCCcc-cHHHHHhcC
Q 010855 392 SPLEKLQAFNDILKDHS-----NDEQNLTVYIGGSPG-DLLCLLEAD 432 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~-----~~~~~~vIyiGDs~t-Dl~~l~~Ad 432 (499)
.+.+|..+++++++... ....+-++++||..+ |=.|+...+
T Consensus 675 ~gvnKG~Av~~ll~~~~~~~~~~~~~dfvl~~Gdd~~~DEdmF~~l~ 721 (797)
T PLN03063 675 IGVTKGAAIGRILGEIVHNKSMTTPIDFVFCSGYFLEKDEDVYTFFE 721 (797)
T ss_pred CCCChHHHHHHHHHHhhhccccCCCCCEEEEeCCCCCCcHHHHHhcc
Confidence 46789999999987531 012345779999854 877776543
No 231
>PLN03017 trehalose-phosphatase
Probab=56.40 E-value=6.9 Score=40.91 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.9
Q ss_pred CceEEEEeCCcccc
Q 010855 197 GHLTLFCDFDWTCT 210 (499)
Q Consensus 197 ~~~~ii~DFD~TIT 210 (499)
++++|++||||||+
T Consensus 110 k~~llflD~DGTL~ 123 (366)
T PLN03017 110 KQIVMFLDYDGTLS 123 (366)
T ss_pred CCeEEEEecCCcCc
Confidence 57899999999999
No 232
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=54.77 E-value=17 Score=35.84 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.6
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
+...++..+...+.+ ..++++|||+. +|+.+...+++ .|.+..
T Consensus 181 ~p~~~~~~~~~~~~~-~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~ 225 (257)
T TIGR01458 181 SKTFFLEALRATGCE-PEEAVMIGDDCRDDVGGAQDCGMRGIQVRT 225 (257)
T ss_pred CHHHHHHHHHHhCCC-hhhEEEECCCcHHHHHHHHHcCCeEEEECC
Confidence 445666666655442 57899999996 99999999997 555543
No 233
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=52.62 E-value=1.6e+02 Score=27.40 Aligned_cols=99 Identities=12% Similarity=0.014 Sum_probs=55.2
Q ss_pred CCChhHHHHHHHHHHcCCCcccEEEEeccC------ChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhh
Q 010855 322 IFQDGCRRFFQNTIKSTNFKTDVHVLSYCW------CGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLE 395 (499)
Q Consensus 322 ~lr~G~~efl~~l~~~g~~~~~~~IVS~g~------s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~ 395 (499)
.+.|...+.++.|++.+. ...+.|||.+- ...-++.+-+..|+ .++.=. ..+. .+
T Consensus 59 ~i~~~~~~~~~~l~~~~~-~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI---pvl~h~------------~kKP---~~ 119 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFG-KDRVLIVSNSAGSSDDPDGERAEALEKALGI---PVLRHR------------AKKP---GC 119 (168)
T ss_pred cCCHHHHHHHHHHHHHCC-CCeEEEEECCCCcccCccHHHHHHHHHhhCC---cEEEeC------------CCCC---cc
Confidence 455666778888888761 01499999873 12234444344443 322100 0111 23
Q ss_pred hHHHHHHHHhhcCCCCCceEEEEcCC-cccHHHHHhcC-ccEEEcC
Q 010855 396 KLQAFNDILKDHSNDEQNLTVYIGGS-PGDLLCLLEAD-IGIVIGS 439 (499)
Q Consensus 396 K~~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l~~Ad-igiv~~~ 439 (499)
..++++.+........+.+++.|||= .||+.+....+ .+|++..
T Consensus 120 ~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 120 FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 33444433322111235789999997 58999999988 4776643
No 234
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=52.32 E-value=8.6 Score=33.96 Aligned_cols=13 Identities=38% Similarity=0.291 Sum_probs=11.3
Q ss_pred EEEEeCCcccccc
Q 010855 200 TLFCDFDWTCTAF 212 (499)
Q Consensus 200 ~ii~DFD~TIT~~ 212 (499)
+|++|.||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 7899999999853
No 235
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=51.25 E-value=16 Score=35.41 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHHhhcCCC--CCceEEEEcCCcccHHHHHhcC------ccEEEcC
Q 010855 393 PLEKLQAFNDILKDHSND--EQNLTVYIGGSPGDLLCLLEAD------IGIVIGS 439 (499)
Q Consensus 393 g~~K~~~l~~~~~~~~~~--~~~~vIyiGDs~tDl~~l~~Ad------igiv~~~ 439 (499)
+..|..+++.+++..... ....++|+||..||-.|+.... ++|.++.
T Consensus 163 ~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~ 217 (235)
T PF02358_consen 163 GVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGS 217 (235)
T ss_dssp T--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES-
T ss_pred CCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEe
Confidence 445999999999865421 1246889999999999998854 3555554
No 236
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=49.35 E-value=78 Score=29.97 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=57.1
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhH--
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKL-- 397 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~-- 397 (499)
.-.+-|.+.++|++-++.| .+++|-|.| |-.- ...+=. +..+-++ ++...|.|+.. .| .|.
T Consensus 101 kahlypDav~~ik~wk~~g---~~vyiYSSG-SV~A-QkL~Fg------hs~agdL---~~lfsGyfDtt--iG-~KrE~ 163 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALG---MRVYIYSSG-SVKA-QKLFFG------HSDAGDL---NSLFSGYFDTT--IG-KKRES 163 (229)
T ss_pred ccccCHhHHHHHHHHHHcC---CcEEEEcCC-Cchh-HHHhhc------ccccccH---Hhhhcceeecc--cc-ccccc
Confidence 4588999999999999999 999999998 4221 111111 1111111 12234444421 11 121
Q ss_pred HHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCc
Q 010855 398 QAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADI 433 (499)
Q Consensus 398 ~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adi 433 (499)
.--.++..+.+. ....++++.|-...|.++..+++
T Consensus 164 ~SY~kIa~~iGl-~p~eilFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 164 QSYAKIAGDIGL-PPAEILFLSDNPEELKAAAGVGL 198 (229)
T ss_pred hhHHHHHHhcCC-CchheEEecCCHHHHHHHHhcch
Confidence 112234444333 24678999999999999999986
No 237
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=49.29 E-value=12 Score=43.81 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=21.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 010855 142 EELLDKLSVLLTGEELEVIKKLYYKAIKLHVNFFAA 177 (499)
Q Consensus 142 ~~~ld~l~~~~~~~e~~~~~~~F~~a~~lE~~Fw~~ 177 (499)
.+.+++...--.+|.+.++++.+.....+-...|-.
T Consensus 508 a~ai~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~ 543 (854)
T PLN02205 508 ADAMDSALEMAEPEKQLRHEKHYRYVSTHDVGYWAR 543 (854)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHH
Confidence 334444332223466777888888777666666644
No 238
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=49.13 E-value=7.6 Score=37.52 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=11.9
Q ss_pred EEEEeCCccccccc
Q 010855 200 TLFCDFDWTCTAFD 213 (499)
Q Consensus 200 ~ii~DFD~TIT~~D 213 (499)
+|++|+|||+...|
T Consensus 1 li~~DlDgTLl~~~ 14 (236)
T TIGR02471 1 LIITDLDNTLLGDD 14 (236)
T ss_pred CeEEeccccccCCH
Confidence 58999999999754
No 239
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=47.97 E-value=39 Score=40.20 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceE-EEEcCCcc-cHHHHHhc
Q 010855 354 DLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLT-VYIGGSPG-DLLCLLEA 431 (499)
Q Consensus 354 ~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~v-IyiGDs~t-Dl~~l~~A 431 (499)
.-|+..|+..++...-|+|.. + .+..-++-...|.+.|+-+...++.+. .++ |++|||-+ |++.|+.-
T Consensus 924 ~elr~~Lr~~gLr~~~iys~~-----~----~~LDVlP~~ASKgqAlRyL~~rwgi~l-~~v~VfaGdSGntD~e~Ll~G 993 (1050)
T TIGR02468 924 KELRKLLRIQGLRCHAVYCRN-----G----TRLNVIPLLASRSQALRYLFVRWGIEL-ANMAVFVGESGDTDYEGLLGG 993 (1050)
T ss_pred HHHHHHHHhCCCceEEEeecC-----C----cEeeeeeCCCCHHHHHHHHHHHcCCCh-HHeEEEeccCCCCCHHHHhCC
Confidence 356777777776433344421 1 122223345579999999988888764 455 67999999 99877543
Q ss_pred C-ccEEEcC
Q 010855 432 D-IGIVIGS 439 (499)
Q Consensus 432 d-igiv~~~ 439 (499)
- .+|++..
T Consensus 994 ~~~tvi~~g 1002 (1050)
T TIGR02468 994 LHKTVILKG 1002 (1050)
T ss_pred ceeEEEEec
Confidence 3 3777654
No 240
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.59 E-value=1e+02 Score=27.15 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=37.3
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEc---CCcccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccccc
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIG---GSPGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVPL 457 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiG---Ds~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p~ 457 (499)
.|..|...+.+.+...+. .-++-.+- ++.++...+...| +++.. + ..+.++|++.++|++--
T Consensus 50 vG~~Ka~~~~~~l~~~~p--~v~i~~~~~~~~~~~~~~~~~~~d--iVi~~~d~~~~~~~l~~~~~~~~i~~i~~ 120 (143)
T cd01483 50 IGKPKAEVAARRLNELNP--GVNVTAVPEGISEDNLDDFLDGVD--LVIDAIDNIAVRRALNRACKELGIPVIDA 120 (143)
T ss_pred CCChHHHHHHHHHHHHCC--CcEEEEEeeecChhhHHHHhcCCC--EEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 466799988887776543 12322222 2233345566677 55543 2 25888999999887643
No 241
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=46.35 E-value=12 Score=32.80 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=12.4
Q ss_pred EEEEeCCccccccc
Q 010855 200 TLFCDFDWTCTAFD 213 (499)
Q Consensus 200 ~ii~DFD~TIT~~D 213 (499)
++++|+||||+..+
T Consensus 2 li~~DlD~Tl~~~~ 15 (128)
T TIGR01681 2 VIVFDLDNTLWTGE 15 (128)
T ss_pred EEEEeCCCCCCCCC
Confidence 78999999999764
No 242
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=45.84 E-value=83 Score=26.14 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCCC---CCCCChhhHHHHHHHHHHh-cCCcccccccccccchhhhhhhHHHHHHHHHHHH----HHH
Q 010855 31 KTLDSLVREWGFELPE---EIITDDATVKCTDFLLSTA-SGKVEGEKVLGKIETPFEKIKVAAYTLSAISPCM----RLF 102 (499)
Q Consensus 31 ~~h~~~~~~~g~~~~~---~~~~~~~~~~Yt~~l~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Al~PC~----~~Y 102 (499)
.+++.+++.+|++.+. .....+.+.++.+.++..+ +.+.. ..++++++--+ ..|
T Consensus 20 ~Lf~~~L~~~Gi~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~------------------~~~lG~~~~~E~~~~~~~ 81 (106)
T PF14518_consen 20 ELFRRFLRALGIDDEPGAYRDPYPPETLALINLFLALCLHRSHY------------------PEALGALLATESSVPQIY 81 (106)
T ss_dssp HHHHHHHHHTT-----TT-----HHHHHHHHHHHHHH--H-SST------------------HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccccCCHHHHHHHHHHHHhcccchhH------------------HHHHHHHHHHhhcChHHH
Confidence 5788999999999873 2235688999999998887 44442 35566655443 336
Q ss_pred HHHHHHHHh
Q 010855 103 EVIAKEIQA 111 (499)
Q Consensus 103 ~~ig~~~~~ 111 (499)
..+.+.+..
T Consensus 82 ~~~~~~l~r 90 (106)
T PF14518_consen 82 RRLIKGLRR 90 (106)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 243
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=45.36 E-value=9 Score=44.94 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=27.3
Q ss_pred CChhhhHHHHHHHHhhcC-----CCCCceEEEEcCCcc-cHHHHHhc
Q 010855 391 ESPLEKLQAFNDILKDHS-----NDEQNLTVYIGGSPG-DLLCLLEA 431 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~-----~~~~~~vIyiGDs~t-Dl~~l~~A 431 (499)
..+.+|..++++++.... ....+-++++||-.+ |=.|+...
T Consensus 764 P~gvnKG~Av~~ll~~~~~~~~~~~~~DFvlc~GDd~~~DEdmF~~l 810 (934)
T PLN03064 764 PVGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDIYTFF 810 (934)
T ss_pred cCCCCHHHHHHHHHHhhhhccccCCCCCEEEEeCCCCCCcHHHHHHH
Confidence 356789999999887531 112456889999653 86666553
No 244
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=43.90 E-value=1.5e+02 Score=28.78 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHH----------HHHH-HHHHhCCCCCCCCCCChhhHHHHHHHHHHhcCCcccccccccccchhhhhh
Q 010855 18 AIRKLRKRVKQKLK----------TLDS-LVREWGFELPEEIITDDATVKCTDFLLSTASGKVEGEKVLGKIETPFEKIK 86 (499)
Q Consensus 18 ~~~~~~~~i~~E~~----------~h~~-~~~~~g~~~~~~~~~~~~~~~Yt~~l~~~a~~~~~~~~~~~~~~~~~~~~~ 86 (499)
+..++...+.+|+. +++. +.+.+|.+.+ +..|+++|.....=+++.-+-+.. +..|.
T Consensus 71 V~~El~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~~~v~-~~~Ps~aT~~fl~sv~~L~t~~~s--~vlGa--------- 138 (231)
T PF12981_consen 71 VAQELQRNINEEMGEGCGKISHYVVFRKALHTYFGFDVN-NRMPSVATTHFLDSVLALFTWDSS--EVLGA--------- 138 (231)
T ss_dssp HHHHHHHHHHHHTTTTTTT--HHHHHHHHHHHHHS---T-T----HHHHHHHHHHHHHCTS-HH--HHHHH---------
T ss_pred HHHHHHHhHHHhcCCCCCCcchHHHHHHHHHHHhCCccc-ccCCcHHHHHHHHHHHHHhCCCHH--HHHHH---------
Confidence 34556677778877 3343 4445887775 578999999988888777643321 00010
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010855 87 VAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKKLYYK 166 (499)
Q Consensus 87 ~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~ 166 (499)
+||- =++-.|=..+-.+|..++....+...+...- ++-+.+-++.=.+-.+.+.+.|+..-.. ++++...++=|..
T Consensus 139 ~YAt-E~~AIpEl~ll~ei~~~la~rk~~~~~~s~l-~F~d~HlDg~E~~H~d~L~~~l~~~i~~--e~q~~~f~~Gf~~ 214 (231)
T PF12981_consen 139 CYAT-EAAAIPELQLLYEIVNELAQRKGLHNSWSQL-DFYDWHLDGTEQEHKDGLRQFLASYIDT--EEQMPLFKDGFLA 214 (231)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTT---HHHHH-------HHHHHCS----HHHHHHHHHHHTT--G--GG-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhcccCCCcchhhh-HHHHHhcchHHHHHHHHHHHHHHHHcCc--chhHHHHHHHHHH
Confidence 0111 1222344444444443333211000011111 3344444555566777888888876432 3368888999999
Q ss_pred HHHHHHHhcCC
Q 010855 167 AIKLHVNFFAA 177 (499)
Q Consensus 167 a~~lE~~Fw~~ 177 (499)
++..=..||.+
T Consensus 215 mI~~m~~wW~~ 225 (231)
T PF12981_consen 215 MIDIMEDWWKE 225 (231)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888888863
No 245
>PRK07411 hypothetical protein; Validated
Probab=43.72 E-value=2.9e+02 Score=29.09 Aligned_cols=137 Identities=11% Similarity=0.041 Sum_probs=76.1
Q ss_pred CCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-
Q 010855 309 LNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV- 387 (499)
Q Consensus 309 i~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~- 387 (499)
++..++.++.+++.+..=-.+--+.+++ ..+.||-.|--+-.+...|...|+..+.++=++..-..+ +..++.
T Consensus 11 l~~~~~~ry~Rq~~l~~~g~~~q~~L~~-----~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sN-L~RQ~l~ 84 (390)
T PRK07411 11 LSKDEYERYSRHLILPEVGLEGQKRLKA-----ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSN-LQRQVIH 84 (390)
T ss_pred CCHHHHHHhhceechhhcCHHHHHHHhc-----CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccc-cCcCccc
Confidence 5667777777766554322344445544 467777776435556666666687655554333221111 111221
Q ss_pred ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCc---ccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 388 NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSP---GDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 388 ~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~---tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
...-.|..|+....+.+...+. .-++..+-... ++...+...| +++.. + -.|-++|.+.++|++
T Consensus 85 ~~~dvG~~Ka~~a~~~l~~~np--~v~v~~~~~~~~~~~~~~~~~~~D--~Vvd~~d~~~~r~~ln~~~~~~~~p~v 157 (390)
T PRK07411 85 GTSWVGKPKIESAKNRILEINP--YCQVDLYETRLSSENALDILAPYD--VVVDGTDNFPTRYLVNDACVLLNKPNV 157 (390)
T ss_pred ChHHCCCcHHHHHHHHHHHHCC--CCeEEEEecccCHHhHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 1222356798888777766553 23445444333 3345667777 45543 2 246788999998876
No 246
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=43.64 E-value=14 Score=34.24 Aligned_cols=16 Identities=19% Similarity=-0.045 Sum_probs=13.7
Q ss_pred CceEEEEeCCcccccc
Q 010855 197 GHLTLFCDFDWTCTAF 212 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~ 212 (499)
.-.++|||+||++|..
T Consensus 6 ~i~~~v~d~dGv~tdg 21 (169)
T TIGR02726 6 NIKLVILDVDGVMTDG 21 (169)
T ss_pred cCeEEEEeCceeeECC
Confidence 4459999999999986
No 247
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=43.54 E-value=9.9 Score=36.17 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=24.0
Q ss_pred EEcCCcccHHHHHhcC-c-cEEEcCCchHHhhhhhhCCcccccc
Q 010855 417 YIGGSPGDLLCLLEAD-I-GIVIGSSSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 417 yiGDs~tDl~~l~~Ad-i-giv~~~~~~L~~~~~~~gi~~~p~~ 458 (499)
-+=||..|+..+..|- + |+++.++..+..+|++.|+++++-.
T Consensus 150 G~ldS~~D~dvl~LA~El~a~lvt~D~gi~~~A~~lGi~~i~~~ 193 (205)
T PF08745_consen 150 GILDSREDIDVLLLALELDAVLVTDDYGIQNWAEKLGIRFIDAR 193 (205)
T ss_dssp -----HHHHHHHHHHHHHT--EE---HHHHHHHHHTT--EE---
T ss_pred ccCCChHhHHHHHHHHHcCCEEEeCCHhHHHHHHHCCCEEEecc
Confidence 3558999999888874 2 7888899999999999999998653
No 248
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=42.63 E-value=2.4e+02 Score=29.52 Aligned_cols=138 Identities=13% Similarity=0.095 Sum_probs=74.2
Q ss_pred CCCHHHHHHHhhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc
Q 010855 308 GLNLEDIKWASQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV 387 (499)
Q Consensus 308 Gi~~~~l~~~~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~ 387 (499)
-++..++.++.+++.+..=-.+--+.+++ ..+.||-.|-.+-.+-..|...|+..+.++=.+..-..+ +.-++.
T Consensus 13 ~~~~~e~~ry~Rqi~l~~~g~~~q~~l~~-----~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sN-L~RQ~l 86 (370)
T PRK05600 13 QLPTSELRRTARQLALPGFGIEQQERLHN-----ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSN-IHRQIL 86 (370)
T ss_pred CCCHHHHHHhhcccchhhhCHHHHHHhcC-----CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEcccc-cccccc
Confidence 45667777887777664322444455543 467777766444555556666676555443332211111 111111
Q ss_pred -ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCCc---ccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 388 -NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGSP---GDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 388 -~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs~---tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
.....|..|+..+.+.+...+.. -++..+-... +....+..+| +++.. + -.+-++|.+.|+|++
T Consensus 87 ~~~~diG~~Ka~~~~~~l~~~np~--v~i~~~~~~i~~~~~~~~~~~~D--lVid~~Dn~~~r~~in~~~~~~~iP~v 160 (370)
T PRK05600 87 FGASDVGRPKVEVAAERLKEIQPD--IRVNALRERLTAENAVELLNGVD--LVLDGSDSFATKFLVADAAEITGTPLV 160 (370)
T ss_pred CChhHCCCHHHHHHHHHHHHHCCC--CeeEEeeeecCHHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 12234567988887777655432 2333433332 2234566677 45543 3 145688999999876
No 249
>PTZ00174 phosphomannomutase; Provisional
Probab=42.26 E-value=14 Score=36.06 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=13.7
Q ss_pred eEEEEeCCcccccccc
Q 010855 199 LTLFCDFDWTCTAFDS 214 (499)
Q Consensus 199 ~~ii~DFD~TIT~~DT 214 (499)
.+|++|+||||...|.
T Consensus 6 klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 6 TILLFDVDGTLTKPRN 21 (247)
T ss_pred eEEEEECcCCCcCCCC
Confidence 4899999999998753
No 250
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=41.94 E-value=2.2e+02 Score=27.58 Aligned_cols=48 Identities=6% Similarity=-0.010 Sum_probs=33.6
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeec
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNE 374 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~ 374 (499)
+.+...+.++.++++| +.+.|.|+. +...+...+++.++..--|.+|-
T Consensus 17 i~~~~~~~i~~l~~~G---~~~~iaTGR-~~~~~~~~~~~~~~~~~~I~~NG 64 (256)
T TIGR00099 17 ISPSTKEALAKLREKG---IKVVLATGR-PYKEVKNILKELGLDTPFITANG 64 (256)
T ss_pred cCHHHHHHHHHHHHCC---CeEEEEeCC-CHHHHHHHHHHcCCCCCEEEcCC
Confidence 3344556788899999 999999997 35677788887765433344553
No 251
>PLN02382 probable sucrose-phosphatase
Probab=41.70 E-value=19 Score=38.37 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=14.5
Q ss_pred CceEEEEeCCcccccc
Q 010855 197 GHLTLFCDFDWTCTAF 212 (499)
Q Consensus 197 ~~~~ii~DFD~TIT~~ 212 (499)
++++|++|+|||+...
T Consensus 8 ~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 8 PRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCEEEEEcCCCcCcCC
Confidence 6889999999999975
No 252
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=41.27 E-value=14 Score=31.95 Aligned_cols=12 Identities=33% Similarity=0.276 Sum_probs=10.9
Q ss_pred EEEEeCCccccc
Q 010855 200 TLFCDFDWTCTA 211 (499)
Q Consensus 200 ~ii~DFD~TIT~ 211 (499)
+++||+||||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 689999999994
No 253
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=40.93 E-value=14 Score=33.71 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=10.4
Q ss_pred EEEEeCCccccccc
Q 010855 200 TLFCDFDWTCTAFD 213 (499)
Q Consensus 200 ~ii~DFD~TIT~~D 213 (499)
+++||+||||+...
T Consensus 2 ia~fD~DgTLi~~~ 15 (159)
T PF08645_consen 2 IAFFDLDGTLIKTK 15 (159)
T ss_dssp EEEE-SCTTTEE-S
T ss_pred EEEEeCCCCccCCC
Confidence 68999999999753
No 254
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=40.85 E-value=1.1e+02 Score=26.69 Aligned_cols=111 Identities=14% Similarity=0.209 Sum_probs=57.0
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCC
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGS 421 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs 421 (499)
.++.|+-.|-.+-.+-..|...|+..+.++=+...-..+...-.+......|..|...+++.+...+. .-++..+...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np--~~~v~~~~~~ 80 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINP--DVEVEAIPEK 80 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHST--TSEEEEEESH
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcC--ceeeeeeecc
Confidence 45677766522334444455557655544333222111111111112223477899999988876653 3456666655
Q ss_pred ccc--HH-HHHhcCccEEEcC-C-----chHHhhhhhhCCcccc
Q 010855 422 PGD--LL-CLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVP 456 (499)
Q Consensus 422 ~tD--l~-~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p 456 (499)
.++ +. .+..+| ++|.. + ..|.++|+++++|++-
T Consensus 81 ~~~~~~~~~~~~~d--~vi~~~d~~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 81 IDEENIEELLKDYD--IVIDCVDSLAARLLLNEICREYGIPFID 122 (135)
T ss_dssp CSHHHHHHHHHTSS--EEEEESSSHHHHHHHHHHHHHTT-EEEE
T ss_pred cccccccccccCCC--EEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 532 22 233566 45543 2 2688899999998764
No 255
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=40.85 E-value=2.3e+02 Score=29.44 Aligned_cols=109 Identities=12% Similarity=0.095 Sum_probs=60.3
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-ccCCChhhhHHHHHHHHhhcCCCCCceEEEEc-
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV-NKLESPLEKLQAFNDILKDHSNDEQNLTVYIG- 419 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiG- 419 (499)
..+.||-.|--+-.+...|...|+..+.++=....-..+ +.-++. .....|..|+....+.+...+.. -++-.+-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sN-L~Rq~l~~~~diG~~Ka~~a~~~l~~~np~--v~v~~~~~ 105 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSN-LHRQVIHSTAGVGQPKAESAREAMLALNPD--VKVTVSVR 105 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccc-cccCcccChhHCCChHHHHHHHHHHHHCCC--cEEEEEEe
Confidence 467777666434455566666787666555443322111 111111 12234667998887777665432 2333332
Q ss_pred --CCcccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 420 --GSPGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 420 --Ds~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
+..+....+..+| +++.. + ..+-+.|.+.++|++
T Consensus 106 ~i~~~~~~~~~~~~D--vVvd~~d~~~~r~~~n~~c~~~~ip~v 147 (355)
T PRK05597 106 RLTWSNALDELRDAD--VILDGSDNFDTRHLASWAAARLGIPHV 147 (355)
T ss_pred ecCHHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 2234455677788 45543 2 147788999999977
No 256
>cd00232 HemeO Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This family includes bacterial HO, as well as the mammalian isoforms HO-1, and HO-2. Heme oxygenases play key roles in heme homeostasis, oxidative stress response, photosynthetic pigment formation in cyanobacteria, cellular signaling in mammals, and iron acquisition from host heme by bacterial pathogens.
Probab=40.29 E-value=3.1e+02 Score=25.55 Aligned_cols=94 Identities=18% Similarity=-0.047 Sum_probs=51.9
Q ss_pred CCCChhhHHHHHHHHHHhcCCcccccccccccchhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHhhcCCCCCcchhc
Q 010855 48 IITDDATVKCTDFLLSTASGKVEGEKVLGKIETPFEKIKVAAYTLSAISPCMRL----FEVIAKEIQALLNPDDGSHLYK 123 (499)
Q Consensus 48 ~~~~~~~~~Yt~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~Al~PC~~~----Y~~ig~~~~~~~~~~~~~~~Y~ 123 (499)
..|.+++ .|.+++...+..+. +.++++++.-+-. =..|++++.+.... +. .=-
T Consensus 93 ~~~~~~~-~~~~~~~~~~~~~~-------------------~~~lg~~YV~egs~l~GG~~i~~~l~~~~~~--~~-~~~ 149 (203)
T cd00232 93 EPPLPAA-AYAARLREIAEENP-------------------ALLLGHAYVRYGADLSGGQVLAKIAQRALLL--EG-KGL 149 (203)
T ss_pred CCCChHH-HHHHHHHHHHhcCH-------------------HHHHHHHHHHHHHHhcccHHHHHHHHHHhCC--CC-ccC
Confidence 3455666 99998887775443 4566666555421 11223333333221 11 112
Q ss_pred ccccccCChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 010855 124 KWIDYYCSQSFQESALQTEELLDKLSVLLTGEELEVIKKLYYK 166 (499)
Q Consensus 124 ~WI~~y~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~ 166 (499)
.+...|+.++-...-..+.+.||.+ ..++++.+++.+.=+.
T Consensus 150 ~f~~~~g~~~~~~~w~~f~~~l~~~--~~~~~~~~~~i~~A~~ 190 (203)
T cd00232 150 AFYAFHGIADRGLFKREFREALDAL--PLDEEERQRVVAEARA 190 (203)
T ss_pred ccccCCCcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHH
Confidence 4566676455566777778888876 4667776665543333
No 257
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=40.01 E-value=20 Score=38.69 Aligned_cols=38 Identities=3% Similarity=0.006 Sum_probs=26.4
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHc
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFAS 362 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~ 362 (499)
+.-.|....+++.++++| -.+.+|+.+- -+++..++..
T Consensus 182 i~k~~~l~~~L~~lr~~G---KklFLiTNS~-~~yt~~~M~y 219 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAG---KKLFLITNSP-FDYTNAVMSY 219 (448)
T ss_dssp EE--CHHHHHHHHHHCCT----EEEEE-SS--HHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHhcC---ceEEEecCCC-Cchhhhhhhh
Confidence 444678999999999999 7888888763 5677777653
No 258
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=38.31 E-value=20 Score=36.32 Aligned_cols=20 Identities=20% Similarity=0.097 Sum_probs=15.8
Q ss_pred CCCCceEEEEeCCccccccc
Q 010855 194 PVEGHLTLFCDFDWTCTAFD 213 (499)
Q Consensus 194 ~~~~~~~ii~DFD~TIT~~D 213 (499)
.+..+-+|+||.||||++.+
T Consensus 122 ~~~~~kvIvFDLDgTLi~~~ 141 (301)
T TIGR01684 122 VFEPPHVVVFDLDSTLITDE 141 (301)
T ss_pred ccccceEEEEecCCCCcCCC
Confidence 34556699999999999863
No 259
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.96 E-value=13 Score=36.81 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=36.5
Q ss_pred hcCccEEEcCCchHHhhhhhhCCccccccchHHHHHHHhhcCCCcccccc-CCEEEEEcCHHHHHHhh
Q 010855 430 EADIGIVIGSSSSLRRLGDHFGVSFVPLFSSLVERQKELVDGSSYKWKRL-PGTLYTVSSWAEIHAFI 496 (499)
Q Consensus 430 ~Adigiv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~~~~~~~~~~-~g~ly~~~~W~~i~~~~ 496 (499)
.|.++.+---..+..+.|++.||||+.|. .+.|... ...++.|+||+|..+++
T Consensus 72 DATHPfA~~is~na~~a~~~~~ipylR~e--------------Rp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 72 DATHPFAAEISQNAIEACRELGIPYLRFE--------------RPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred ECCCchHHHHHHHHHHHHhhcCcceEEEE--------------cCCcccCCCCeEEEeCCHHHHHHHH
Confidence 34444333233589999999999999997 3444432 22588888998888776
No 260
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=37.66 E-value=24 Score=32.44 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=16.5
Q ss_pred CCCCCCCceEEEEeCCccccccc
Q 010855 191 VKDPVEGHLTLFCDFDWTCTAFD 213 (499)
Q Consensus 191 ~~~~~~~~~~ii~DFD~TIT~~D 213 (499)
+..|+-...++++|.||||+..+
T Consensus 6 ~~~~~~~~k~~~~D~Dgtl~~~~ 28 (166)
T TIGR01664 6 ADGPKPQSKVAAFDLDGTLITTR 28 (166)
T ss_pred CCCCCCcCcEEEEeCCCceEecC
Confidence 44565445578889999999743
No 261
>PRK13689 hypothetical protein; Provisional
Probab=37.64 E-value=1e+02 Score=24.52 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=35.1
Q ss_pred cccCChhHHHHHHHHHHHHHHHh-------------------ccCCHHHHHHHHHHHHHHHHH
Q 010855 127 DYYCSQSFQESALQTEELLDKLS-------------------VLLTGEELEVIKKLYYKAIKL 170 (499)
Q Consensus 127 ~~y~s~~f~~~~~~~~~~ld~l~-------------------~~~~~~e~~~~~~~F~~a~~l 170 (499)
.-|+++.++.....+..+|++-- ...++++++.+.+.|.+|..-
T Consensus 5 SKYsd~qvE~il~el~~VLeKH~Ap~DLSLMvLGN~vTnlln~~V~~~qR~~iAe~Fa~AL~~ 67 (75)
T PRK13689 5 SKYSDEQVEQLLAELLAVLEKHKAPTDLSLMVLGNMVTNLLNTSVAPAQRQAIAESFARALQS 67 (75)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 45888999999999999998732 234578999999999998763
No 262
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=37.54 E-value=36 Score=39.53 Aligned_cols=98 Identities=22% Similarity=0.348 Sum_probs=64.2
Q ss_pred cchhhhhhhH----HHHHHHHHHHH----HHHHHHHHHHHhhcCCCCCcchhcccccccCChhHHHHHHHHHHHHHHHhc
Q 010855 79 ETPFEKIKVA----AYTLSAISPCM----RLFEVIAKEIQALLNPDDGSHLYKKWIDYYCSQSFQESALQTEELLDKLSV 150 (499)
Q Consensus 79 ~~~~~~~~~~----~~~l~Al~PC~----~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~s~~f~~~~~~~~~~ld~l~~ 150 (499)
+|||||-.++ -.++.+|..|. ++|-++..+...-.. +.-+|..|-.+= .-++....-.....|+++-.
T Consensus 637 ~sPiekRsv~D~LPsaalvsma~cA~GSnrGYDElvph~i~vVs---EeR~Y~~w~p~~-~vs~s~GIi~~r~~ln~lht 712 (1521)
T KOG3625|consen 637 ESPIEKRSVYDALPSAALVSMACCASGSNRGYDELVPHHIHVVS---EERFYTKWNPTG-EVSFSSGIIAARCALNKLHT 712 (1521)
T ss_pred CCCcccCChhhhcchHHHHHHHHhhccCccChhhhcccceeeec---ccccccccCCCC-CcCcchhHHHHHHHHHHHHH
Confidence 5899998875 35678888887 569988766554222 667999999742 23567777778888888742
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCC--CccccccCCCCCCCCce
Q 010855 151 LLTGEELEVIKKLYYKAIKLHVNFFAAQPVKQ--QTTVPLSWVKDPVEGHL 199 (499)
Q Consensus 151 ~~~~~e~~~~~~~F~~a~~lE~~Fw~~a~~~~--~~~~p~~~~~~~~~~~~ 199 (499)
+..++.| .+.+.+| +.+|.+++ |+|.-.+-
T Consensus 713 -------~l~ekgf-----------sqv~Vdqm~~diVavtR-h~p~thqs 744 (1521)
T KOG3625|consen 713 -------ELGEKGF-----------SQVYVDQMDEDIVAVTR-HSPSTHQS 744 (1521)
T ss_pred -------HHHhccc-----------ceeeecccCCceEEEEe-cCCCcCce
Confidence 2234444 4445543 45888877 56644433
No 263
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=37.17 E-value=25 Score=33.55 Aligned_cols=39 Identities=31% Similarity=0.505 Sum_probs=33.7
Q ss_pred EcCCcccHHHHHhcC-c-cEEEcCCchHHhhhhhhCCcccc
Q 010855 418 IGGSPGDLLCLLEAD-I-GIVIGSSSSLRRLGDHFGVSFVP 456 (499)
Q Consensus 418 iGDs~tDl~~l~~Ad-i-giv~~~~~~L~~~~~~~gi~~~p 456 (499)
+=||.+|+..+..|= + |+++.++-.+..+|++.|+++.+
T Consensus 154 iLdS~~DidvlaLA~ELda~lvTdD~giqn~A~~Lgi~~~~ 194 (206)
T TIGR03875 154 ILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRFVD 194 (206)
T ss_pred ccCchhhHHHHHHHHHcCcEEEeCcHHHHHHHHHcCCeeec
Confidence 559999999887773 2 78888998999999999999987
No 264
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=37.11 E-value=3.1e+02 Score=27.40 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=59.2
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcC
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV-NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGG 420 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD 420 (499)
..+.|+-.|--+-.+-..|...|+..+.|+=.+..-..+ ..-++. .....|..|+.++.+.+...+. ..++..+=+
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sN-lnRQ~~~~~~~vG~~Kve~~~~rl~~INP--~~~V~~i~~ 107 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTN-TNRQIHALRDNVGLAKAEVMAERIRQINP--ECRVTVVDD 107 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccc-cccccccChhhcChHHHHHHHHHHHhHCC--CcEEEEEec
Confidence 457777776445566666766676555544332221111 111111 1123466899998887766543 234555533
Q ss_pred Ccc--cHHHHH--hcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 421 SPG--DLLCLL--EADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 421 s~t--Dl~~l~--~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
..+ ....+. ..| +++.+ + ..|.++|++.++|++
T Consensus 108 ~i~~e~~~~ll~~~~D--~VIdaiD~~~~k~~L~~~c~~~~ip~I 150 (268)
T PRK15116 108 FITPDNVAEYMSAGFS--YVIDAIDSVRPKAALIAYCRRNKIPLV 150 (268)
T ss_pred ccChhhHHHHhcCCCC--EEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 222 233333 355 45544 2 258999999999988
No 265
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=36.89 E-value=81 Score=23.13 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 010855 134 FQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKL 170 (499)
Q Consensus 134 f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~l 170 (499)
|++...++.++++++-.. +-.++.+.+.|.+++++
T Consensus 1 fEe~~~~Le~Iv~~Le~~--~~sLdes~~lyeeg~~l 35 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESG--ELSLDESLKLYEEGMEL 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 778889999999998632 33588889999998875
No 266
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=36.42 E-value=61 Score=31.74 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHcCCCcccEEEEec--cCChHHHHHHHHcCCCC
Q 010855 325 DGCRRFFQNTIKSTNFKTDVHVLSY--CWCGDLIRSAFASGDLN 366 (499)
Q Consensus 325 ~G~~efl~~l~~~g~~~~~~~IVS~--g~s~~~I~~~L~~~gl~ 366 (499)
||..++++.++++| +++.++|. +.+..-+...|+..|++
T Consensus 20 ~~a~~~l~~l~~~g---~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 20 PEAETFVHELQKRD---IPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred cCHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 46778899999999 99999997 44556667777777764
No 267
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=36.42 E-value=1e+02 Score=31.75 Aligned_cols=97 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred cCCCChhHHHHHHHHHHcCCCcccEEEEecc-CC-hHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCC-hhhh
Q 010855 320 HLIFQDGCRRFFQNTIKSTNFKTDVHVLSYC-WC-GDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLES-PLEK 396 (499)
Q Consensus 320 ~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g-~s-~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~-g~~K 396 (499)
.-..-||+..+++.+-+.|. .+++-||.+ |. -+.+...+..++++.-.++=- .+.|.++....+ +.-|
T Consensus 194 tr~~ipGV~~~yr~l~~~~~--apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~-------~~g~~~~~i~~sga~rK 264 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGD--APVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLR-------RWGGVLDNIIESGAARK 264 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCC--CCeEEecCChhHhHHHHHHHHhcCCCCCCchhHh-------hcCCcccccccchhhhc
Confidence 45678999999999988773 788888876 31 123444444444432221110 011112222223 3457
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCC-cccHHHH
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGS-PGDLLCL 428 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs-~tDl~~l 428 (499)
...++.++.+.. ..+.|.|||| .-|++.-
T Consensus 265 ~~~l~nil~~~p---~~kfvLVGDsGE~DpeIY 294 (373)
T COG4850 265 GQSLRNILRRYP---DRKFVLVGDSGEHDPEIY 294 (373)
T ss_pred ccHHHHHHHhCC---CceEEEecCCCCcCHHHH
Confidence 777877776653 3578899996 5687643
No 268
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=36.08 E-value=15 Score=36.25 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=35.6
Q ss_pred hcCccEEEcCCchHHhhhhhhCCccccccchHHHHHHHhhcCCCccccccCC-EEEEEcCHHHHHHhh
Q 010855 430 EADIGIVIGSSSSLRRLGDHFGVSFVPLFSSLVERQKELVDGSSYKWKRLPG-TLYTVSSWAEIHAFI 496 (499)
Q Consensus 430 ~Adigiv~~~~~~L~~~~~~~gi~~~p~~~~~~~~~~~~~~~~~~~~~~~~g-~ly~~~~W~~i~~~~ 496 (499)
.|.++.+..-..+..+.|++.|+||+.|++ +.|....+ .++.|.||++..+++
T Consensus 71 DATHPfA~~is~~a~~ac~~~~ipyiR~eR--------------~~~~~~~~~~~~~v~s~~~a~~~l 124 (248)
T PRK08057 71 DATHPYAAQISANAAAACRALGIPYLRLER--------------PSWLPQPGDRWIEVDDIEEAAEAL 124 (248)
T ss_pred ECCCccHHHHHHHHHHHHHHhCCcEEEEeC--------------CCcCCCCCCCEEEECCHHHHHHHh
Confidence 444444433346899999999999999973 33433222 577788888776655
No 269
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=35.98 E-value=85 Score=29.65 Aligned_cols=36 Identities=6% Similarity=-0.039 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN 366 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~ 366 (499)
..+.++.++++| ++++|+|+. +...++.+++..++.
T Consensus 21 ~~~~l~~l~~~g---i~~~i~TgR-~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAG---IPVILCTSK-TAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCCC
Confidence 346788889999 999999998 477888899887764
No 270
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=35.79 E-value=94 Score=27.38 Aligned_cols=50 Identities=4% Similarity=-0.168 Sum_probs=37.2
Q ss_pred CCCChhHHHHHHHHHHcCCCcccEEEEeccCCh--------------HHHHHHHHcCCCCceEEEee
Q 010855 321 LIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCG--------------DLIRSAFASGDLNAFRVHSN 373 (499)
Q Consensus 321 i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~--------------~~I~~~L~~~gl~~~~I~aN 373 (499)
..+.+++.+.++.++++| +.++++|+--.. ..+..+|.+++++-.+|+-.
T Consensus 23 ~~~~~~~ie~L~~l~~~G---~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 23 VAPILAVIEKLRHYKALG---FEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred cccCHHHHHHHHHHHHCC---CEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 357788899999999999 999999984111 26678888888776666543
No 271
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.69 E-value=1.2e+02 Score=28.06 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHh----cCccEEEcCCchHHhhhhhhCCccccccchHHHH
Q 010855 397 LQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLE----ADIGIVIGSSSSLRRLGDHFGVSFVPLFSSLVER 464 (499)
Q Consensus 397 ~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~----Adigiv~~~~~~L~~~~~~~gi~~~p~~~~~~~~ 464 (499)
...+.+++.. .-.+|.=++..|+..... .++.+++|+. ...++|+++|++.+++.++-.++
T Consensus 92 ~~~~~~ll~~------~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~-~~~~~A~~~gl~~v~i~sg~esi 156 (176)
T PF06506_consen 92 LESIEELLGV------DIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGG-VVCRLARKLGLPGVLIESGEESI 156 (176)
T ss_dssp HHHHHHHHT-------EEEEEEESSHHHHHHHHHHHHHTT--EEEESH-HHHHHHHHTTSEEEESS--HHHH
T ss_pred HHHHHHHhCC------ceEEEEECCHHHHHHHHHHHHHcCCcEEECCH-HHHHHHHHcCCcEEEEEecHHHH
Confidence 4556666631 344566688889885544 3677888886 46899999999999998654443
No 272
>PRK04358 hypothetical protein; Provisional
Probab=35.35 E-value=25 Score=33.82 Aligned_cols=40 Identities=30% Similarity=0.483 Sum_probs=34.5
Q ss_pred EcCCcccHHHHHhcC-c-cEEEcCCchHHhhhhhhCCccccc
Q 010855 418 IGGSPGDLLCLLEAD-I-GIVIGSSSSLRRLGDHFGVSFVPL 457 (499)
Q Consensus 418 iGDs~tDl~~l~~Ad-i-giv~~~~~~L~~~~~~~gi~~~p~ 457 (499)
+=||.+|+..+..|= + |+++.++..+..+|++.|+++.+-
T Consensus 158 ~ldS~~DidvlaLA~ELda~lvTdD~giqn~A~~LGI~~~~~ 199 (217)
T PRK04358 158 ILDSAEDLDVLLLAKELDAAVVSADEGIRKWAERLGLRFVDA 199 (217)
T ss_pred cccchhhHHHHHHHHHhCCEEEeCCHHHHHHHHHcCCeeecH
Confidence 679999999887773 2 788888889999999999999874
No 273
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=35.22 E-value=19 Score=32.59 Aligned_cols=13 Identities=31% Similarity=0.084 Sum_probs=11.6
Q ss_pred EEEEeCCcccccc
Q 010855 200 TLFCDFDWTCTAF 212 (499)
Q Consensus 200 ~ii~DFD~TIT~~ 212 (499)
+|++|.||||+..
T Consensus 3 ~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 3 LLILDVDGVLTDG 15 (154)
T ss_pred EEEEeCceeEEcC
Confidence 7899999999974
No 274
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=34.61 E-value=1.8e+02 Score=28.46 Aligned_cols=109 Identities=15% Similarity=0.123 Sum_probs=58.0
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcC
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV-NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGG 420 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD 420 (499)
.++.|+-.|--+-.+...|...|+..+.++=.+..-..+. .-++. .....|..|+..+.+.+...+.. -++-.+-.
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL-~RQ~l~~~~diG~~Ka~~a~~~l~~inp~--v~i~~~~~ 101 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNL-QRQVLHSDANIGQPKVESAKDALTQINPH--IAINPINA 101 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCc-ccceeeeHhhCCCcHHHHHHHHHHHHCCC--cEEEEEec
Confidence 4577776653345566666666776555543322211111 11111 11234567988887777655432 23334432
Q ss_pred C---cccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 421 S---PGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 421 s---~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
. .++...+..+| +++.. + ..|-++|.+.++|++
T Consensus 102 ~i~~~~~~~~~~~~D--lVvd~~D~~~~r~~ln~~~~~~~ip~v 143 (240)
T TIGR02355 102 KLDDAELAALIAEHD--IVVDCTDNVEVRNQLNRQCFAAKVPLV 143 (240)
T ss_pred cCCHHHHHHHhhcCC--EEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 2 23334566677 45543 2 247789999999987
No 275
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=33.69 E-value=82 Score=29.72 Aligned_cols=49 Identities=10% Similarity=-0.072 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
+.+...+.++.++++| ++++|.|+-. ...++.+++..++..--|.+|--
T Consensus 19 i~~~~~~~i~~l~~~g---~~~~~~TGR~-~~~~~~~~~~l~~~~~~i~~NGa 67 (215)
T TIGR01487 19 ISERAIEAIRKAEKKG---IPVSLVTGNT-VPFARALAVLIGTSGPVVAENGG 67 (215)
T ss_pred cCHHHHHHHHHHHHCC---CEEEEEcCCc-chhHHHHHHHhCCCCcEEEccCc
Confidence 4445566788899999 9999999974 55677777776654334555643
No 276
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=33.59 E-value=23 Score=35.92 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=14.7
Q ss_pred CCceEEEEeCCccccccc
Q 010855 196 EGHLTLFCDFDWTCTAFD 213 (499)
Q Consensus 196 ~~~~~ii~DFD~TIT~~D 213 (499)
+.+.+|+||.||||++.+
T Consensus 126 ~~~~~i~~D~D~TL~~~~ 143 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDE 143 (303)
T ss_pred eeccEEEEecCCCccCCC
Confidence 345699999999999863
No 277
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=33.53 E-value=3.4e+02 Score=26.28 Aligned_cols=47 Identities=9% Similarity=-0.076 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEee
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSN 373 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN 373 (499)
+.+...+.++.++++| +++.|+|+. +-..+.++++..++...-|-+|
T Consensus 21 i~~~~~~al~~~~~~g---~~v~iaTGR-~~~~~~~~~~~l~~~~~~I~~N 67 (264)
T COG0561 21 ISPETKEALARLREKG---VKVVLATGR-PLPDVLSILEELGLDGPLITFN 67 (264)
T ss_pred cCHHHHHHHHHHHHCC---CEEEEECCC-ChHHHHHHHHHcCCCccEEEeC
Confidence 3344556778889999 999999987 4567888888877654233344
No 278
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=32.07 E-value=3.5e+02 Score=25.94 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=57.3
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcC
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV-NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGG 420 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD 420 (499)
.++.||-.|-.+-.+-..|...|+..+.++=++..-..+ +..++. .....|..|+.++.+.+...+.. -++-.+=.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sN-L~Rq~l~~~~diG~~Ka~~~~~~l~~~np~--~~i~~~~~ 98 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSN-LQRQILHTEADVGQPKAEAAAERLRAINPD--VEIEAYNE 98 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcc-cccccccChhhCCChHHHHHHHHHHHhCCC--CEEEEecc
Confidence 467777666334445555666677655554333322111 111111 11234667999888877765432 23333322
Q ss_pred C---cccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCcccc
Q 010855 421 S---PGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVP 456 (499)
Q Consensus 421 s---~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p 456 (499)
. .+....+..+| ++|.. + ..+.++|.+.++|++-
T Consensus 99 ~i~~~~~~~~~~~~D--vVi~~~d~~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 99 RLDAENAEELIAGYD--LVLDCTDNFATRYLINDACVKLGKPLVS 141 (228)
T ss_pred eeCHHHHHHHHhCCC--EEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 2 22223455677 44433 2 2488889999988764
No 279
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=31.97 E-value=95 Score=29.92 Aligned_cols=45 Identities=7% Similarity=-0.161 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
..+.|+.++++| +++++.|+- +..-+...+++.|+..-.|.+|--
T Consensus 20 ~~~ai~~l~~~G---~~~vi~TgR-~~~~~~~~~~~lg~~~~~I~~NGa 64 (225)
T TIGR02461 20 AREALEELKDLG---FPIVFVSSK-TRAEQEYYREELGVEPPFIVENGG 64 (225)
T ss_pred HHHHHHHHHHCC---CEEEEEeCC-CHHHHHHHHHHcCCCCcEEEcCCc
Confidence 456788889999 999999976 455677788887764334555543
No 280
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=30.41 E-value=4.8e+02 Score=24.74 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=71.2
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCCCChhhHHHHHHHHHHhcCCcccccccccc
Q 010855 4 FSKPSLSHDEEDKLAIRKLRKRVKQKLKTLDSLVREWGFELPE-----EIITDDATVKCTDFLLSTASGKVEGEKVLGKI 78 (499)
Q Consensus 4 ~~~~~~a~d~~~~~~~~~~~~~i~~E~~~h~~~~~~~g~~~~~-----~~~~~~~~~~Yt~~l~~~a~~~~~~~~~~~~~ 78 (499)
+.+++-+.+.+....+..+... +|++ ++++|++..- .++-...-.+|.-.|-..|..
T Consensus 9 ~d~~sa~~~~dm~qrIG~LTRm------L~es-lrelglD~~~~~aa~aIpDArdRL~YVv~mTeqAA~----------- 70 (217)
T COG3143 9 ADEASAAAEPDMIQRIGSLTRM------LRES-LRELGLDQAIAEAAEAIPDARDRLNYVVQMTEQAAE----------- 70 (217)
T ss_pred HHHHhcccCccHHHHHHHHHHH------HHHH-HHHhCcchhhHHHHHhCccHHHHHHHHHHHHHHHHH-----------
Confidence 3345556666666666555443 4554 5678988752 333344556777777777632
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhcccccccC-ChhHHHHHHHHHHHHHHHhc
Q 010855 79 ETPFEKIKVAAYTLSAISPCMRLFEVIAKEIQALLNPDDGSHLYKKWIDYYC-SQSFQESALQTEELLDKLSV 150 (499)
Q Consensus 79 ~~~~~~~~~~~~~l~Al~PC~~~Y~~ig~~~~~~~~~~~~~~~Y~~WI~~y~-s~~f~~~~~~~~~~ld~l~~ 150 (499)
-++-|+-.|.-.-..+++..... ...++.|.+.-- .++|.+.|..+.++|-..-.
T Consensus 71 -----------r~lnaVea~~P~qd~L~~~a~~l------~~rWq~wm~~~i~~~~~r~Lv~~t~~fL~~vp~ 126 (217)
T COG3143 71 -----------RALNAVEASQPHQDQLEKSAKAL------TQRWQDWMARPIDLDDARELVTDTRQFLADVPQ 126 (217)
T ss_pred -----------HHHHHHHhhchHHHHHHHHHHHH------HHHHHHHHcCccchHHHHHHHHHHHHHHHhccc
Confidence 25666777777777776665542 246677877653 47899999999998876543
No 281
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=30.06 E-value=35 Score=33.04 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=37.2
Q ss_pred ChhhhHHHHHHHHhhcCCCCCceEEEEcC----CcccHHHHHhcCc-cEEEcCCchHHhhhhh
Q 010855 392 SPLEKLQAFNDILKDHSNDEQNLTVYIGG----SPGDLLCLLEADI-GIVIGSSSSLRRLGDH 449 (499)
Q Consensus 392 ~g~~K~~~l~~~~~~~~~~~~~~vIyiGD----s~tDl~~l~~Adi-giv~~~~~~L~~~~~~ 449 (499)
.|.||.-.|+.+.... ...++++|| |-||.+....+++ |+.|.+.....+.|++
T Consensus 159 ~GwDKty~Lr~l~~~~----~~~I~FfGDkt~pGGNDyei~~~~rt~g~~V~~p~DT~~~l~~ 217 (220)
T PF03332_consen 159 KGWDKTYCLRHLEDEG----FDEIHFFGDKTFPGGNDYEIFEDPRTIGHTVTSPEDTIKQLKE 217 (220)
T ss_dssp TT-SGGGGGGGTTTTT-----SEEEEEESS-STTSTTHHHHHSTTSEEEE-SSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHhcc----cceEEEEehhccCCCCCceeeecCCccEEEeCCHHHHHHHHHH
Confidence 4678887777665421 467889999 7799999999875 8888776555555543
No 282
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=29.89 E-value=28 Score=31.97 Aligned_cols=13 Identities=31% Similarity=0.084 Sum_probs=12.3
Q ss_pred EEEEeCCcccccc
Q 010855 200 TLFCDFDWTCTAF 212 (499)
Q Consensus 200 ~ii~DFD~TIT~~ 212 (499)
++|+|.|||+|+.
T Consensus 10 Lli~DVDGvLTDG 22 (170)
T COG1778 10 LLILDVDGVLTDG 22 (170)
T ss_pred EEEEeccceeecC
Confidence 9999999999986
No 283
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=29.53 E-value=3.3e+02 Score=26.53 Aligned_cols=46 Identities=7% Similarity=-0.026 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 326 GCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 326 G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
...+.|+.++++| +.+.|.|+- +...++.++++.+++..-|.+|-.
T Consensus 23 ~~~~ai~~l~~~G---~~~~iaTGR-~~~~~~~~~~~l~~~~~~I~~NGa 68 (272)
T PRK15126 23 KTLSTLARLRERD---ITLTFATGR-HVLEMQHILGALSLDAYLITGNGT 68 (272)
T ss_pred HHHHHHHHHHHCC---CEEEEECCC-CHHHHHHHHHHcCCCCcEEecCCc
Confidence 3445677888999 999999986 355678888887764333445543
No 284
>PRK06153 hypothetical protein; Provisional
Probab=29.49 E-value=3.8e+02 Score=28.43 Aligned_cols=131 Identities=11% Similarity=0.123 Sum_probs=73.7
Q ss_pred hhcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEe-eC-Ceeecccc-ccCCChh
Q 010855 318 SQHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVY-EE-SISTGEIV-NKLESPL 394 (499)
Q Consensus 318 ~~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~-~~-g~~tG~~~-~~~~~g~ 394 (499)
.+...-|-|..++-+.++. -.+.||-.|..+-+|...|.+.|+..+.++=....- .| ++..|-+. ..+..+.
T Consensus 158 ~dt~s~R~~i~~~q~kL~~-----~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~ 232 (393)
T PRK06153 158 PDTASSRAGIGALSAKLEG-----QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAP 232 (393)
T ss_pred hhhhccccChHHHHHHHhh-----CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcc
Confidence 3455667777777777765 468888887777788888888887545443222111 11 12222221 1111223
Q ss_pred hhHHHHHHHHhhcCCCCCceEEEEcCCcccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCccccc
Q 010855 395 EKLQAFNDILKDHSNDEQNLTVYIGGSPGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVPL 457 (499)
Q Consensus 395 ~K~~~l~~~~~~~~~~~~~~vIyiGDs~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p~ 457 (499)
-|+.++++.+...+..-.....+| |..+ +..+..+| ++|.. + ..+.++|.+.|+|++-.
T Consensus 233 ~KVevaa~rl~~in~~I~~~~~~I-~~~n-~~~L~~~D--iV~dcvDn~~aR~~ln~~a~~~gIP~Id~ 297 (393)
T PRK06153 233 KKVDYFKSRYSNMRRGIVPHPEYI-DEDN-VDELDGFT--FVFVCVDKGSSRKLIVDYLEALGIPFIDV 297 (393)
T ss_pred hHHHHHHHHHHHhCCeEEEEeecC-CHHH-HHHhcCCC--EEEEcCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 689888877765432100111134 3322 34566677 45543 2 35789999999998754
No 285
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=29.09 E-value=25 Score=33.95 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=7.3
Q ss_pred EEeCCcccccc
Q 010855 202 FCDFDWTCTAF 212 (499)
Q Consensus 202 i~DFD~TIT~~ 212 (499)
++||||||+..
T Consensus 1 ~lDyDGTL~p~ 11 (235)
T PF02358_consen 1 FLDYDGTLAPI 11 (235)
T ss_dssp EEE-TTTSS--
T ss_pred CcccCCccCCC
Confidence 58999999963
No 286
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=28.84 E-value=1.2e+02 Score=29.80 Aligned_cols=46 Identities=7% Similarity=-0.114 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeec
Q 010855 325 DGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNE 374 (499)
Q Consensus 325 ~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~ 374 (499)
++..+.|+.++++| ++++|+|+-- ...+...+++.++..-.|..|-
T Consensus 24 ~~~~~ai~~l~~~G---i~~~iaTgR~-~~~~~~~~~~l~l~~~~i~~nG 69 (273)
T PRK00192 24 EPAKPALKALKEKG---IPVIPCTSKT-AAEVEVLRKELGLEDPFIVENG 69 (273)
T ss_pred HHHHHHHHHHHHCC---CEEEEEcCCC-HHHHHHHHHHcCCCCCEEEEcC
Confidence 44566788899999 9999999874 5677888888776433344554
No 287
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=28.73 E-value=27 Score=32.45 Aligned_cols=18 Identities=28% Similarity=0.097 Sum_probs=15.3
Q ss_pred ceEEEEeCCcccccccch
Q 010855 198 HLTLFCDFDWTCTAFDSS 215 (499)
Q Consensus 198 ~~~ii~DFD~TIT~~DT~ 215 (499)
.+.++.|.|||||..+|.
T Consensus 6 ~~~~ciDIDGtit~~~t~ 23 (194)
T COG5663 6 QLRCCIDIDGTITDDPTF 23 (194)
T ss_pred HhheeeccCCceecCccc
Confidence 347899999999998884
No 288
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=27.41 E-value=5.2e+02 Score=25.11 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=56.7
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-ccCCChhhhHHHHHHHHhhcCCCCCceEEEEcC
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV-NKLESPLEKLQAFNDILKDHSNDEQNLTVYIGG 420 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD 420 (499)
..+.|+-.|-.+-.+-..|...|+..+.++=++..-..+. .-++. .....|..|+..+.+.+...+.. -++-.+=+
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNl-nRq~~~~~~diG~~Kae~~~~~l~~inP~--~~V~~~~~ 88 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNL-NRQIHALLSTVGKPKVEVMAERIRDINPE--CEVDAVEE 88 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhh-cchhCcChhhCCCcHHHHHHHHHHHHCCC--cEEEEeee
Confidence 3567776653344555666666776555544333221111 11111 11234567999888877765532 23333322
Q ss_pred Ccc--cHHHHH--hcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 421 SPG--DLLCLL--EADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 421 s~t--Dl~~l~--~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
-.+ .+..+. ..| +++.+ + -.|.++|+++++|++
T Consensus 89 ~i~~~~~~~l~~~~~D--~VvdaiD~~~~k~~L~~~c~~~~ip~I 131 (231)
T cd00755 89 FLTPDNSEDLLGGDPD--FVVDAIDSIRAKVALIAYCRKRKIPVI 131 (231)
T ss_pred ecCHhHHHHHhcCCCC--EEEEcCCCHHHHHHHHHHHHHhCCCEE
Confidence 211 122233 345 55544 2 259999999999987
No 289
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=27.15 E-value=1.1e+02 Score=30.02 Aligned_cols=41 Identities=5% Similarity=-0.008 Sum_probs=30.7
Q ss_pred CChhHHHHHHHHHHcCCCcccEEEEeccCC--hHHHHHHHHcCCCC
Q 010855 323 FQDGCRRFFQNTIKSTNFKTDVHVLSYCWC--GDLIRSAFASGDLN 366 (499)
Q Consensus 323 lr~G~~efl~~l~~~g~~~~~~~IVS~g~s--~~~I~~~L~~~gl~ 366 (499)
+-||..++++.++++| +++.++|++=+ ..-+...|+..|++
T Consensus 22 ~~~~a~~al~~l~~~G---~~~~~~Tn~~~~~~~~~~~~l~~~g~~ 64 (257)
T TIGR01458 22 AVPGSQEAVKRLRGAS---VKVRFVTNTTKESKQDLLERLQRLGFD 64 (257)
T ss_pred cCCCHHHHHHHHHHCC---CeEEEEECCCCCCHHHHHHHHHHcCCC
Confidence 4678899999999999 99999998632 23456666777753
No 290
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=26.72 E-value=50 Score=33.75 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=22.8
Q ss_pred ceEEEEcCCc-ccHHHHHhcCc-cEEEcC
Q 010855 413 NLTVYIGGSP-GDLLCLLEADI-GIVIGS 439 (499)
Q Consensus 413 ~~vIyiGDs~-tDl~~l~~Adi-giv~~~ 439 (499)
.++++|||+. +|+.+...++. .|++..
T Consensus 264 ~~~~mIGD~~~tDI~ga~~~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQNYGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHHhCCceEEEecc
Confidence 5899999998 99999999997 566644
No 291
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=26.58 E-value=1.7e+02 Score=31.20 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCCcccEEEEecc-CChHHHHHHHHcC---CCCc-eEEEeeceEeeCCeeeccccccCCChhhhHHHHHH
Q 010855 328 RRFFQNTIKSTNFKTDVHVLSYC-WCGDLIRSAFASG---DLNA-FRVHSNELVYEESISTGEIVNKLESPLEKLQAFND 402 (499)
Q Consensus 328 ~efl~~l~~~g~~~~~~~IVS~g-~s~~~I~~~L~~~---gl~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~ 402 (499)
.++++.++. | .++.|-|+| -++..|+..|+.. +.+. +.--||....+|| ||| ++..+=.+.+.+
T Consensus 2 ~~~~~~~~~-g---~~~Gi~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GG-YTG------mtP~dF~~~V~~ 70 (421)
T PRK15052 2 KTLIARHKA-G---EHIGICSVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGG-YTG------MTPADFREFVYG 70 (421)
T ss_pred hhHHHhhhc-C---CCCceeeECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCC-cCC------CCHHHHHHHHHH
Confidence 345565554 5 577788876 2356888877542 2221 3345777665544 466 455555567777
Q ss_pred HHhhcCCCCCceEEEEcCCccc
Q 010855 403 ILKDHSNDEQNLTVYIGGSPGD 424 (499)
Q Consensus 403 ~~~~~~~~~~~~vIyiGDs~tD 424 (499)
+....+.+ .+++|.-||..+=
T Consensus 71 iA~~~gf~-~~~iiLggDHlGP 91 (421)
T PRK15052 71 IADKVGFP-RERIILGGDHLGP 91 (421)
T ss_pred HHHHcCCC-hhcEEeecCCCCC
Confidence 77766653 3578899998764
No 292
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.23 E-value=1.6e+02 Score=26.92 Aligned_cols=46 Identities=7% Similarity=-0.055 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC-ceEEEe
Q 010855 324 QDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN-AFRVHS 372 (499)
Q Consensus 324 r~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~-~~~I~a 372 (499)
-||+.++...++++|- ..+++||+| .......+.+..|.. +++.++
T Consensus 58 lPgY~~~~d~f~~kGV--D~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~ 104 (165)
T COG0678 58 LPGYLELADEFKAKGV--DEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIP 104 (165)
T ss_pred CccHHHHHHHHHHcCC--ceEEEEEeC-cHHHHHHHHHhcCCCccEEEec
Confidence 4899999999999992 469999999 344555555555554 444443
No 293
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=26.19 E-value=2.5e+02 Score=25.73 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=41.9
Q ss_pred CChhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccCCCCCCCCceEEEEeCCccc
Q 010855 130 CSQSFQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKLHVNFFAAQPVKQQTTVPLSWVKDPVEGHLTLFCDFDWTC 209 (499)
Q Consensus 130 ~s~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~lE~~Fw~~a~~~~~~~~p~~~~~~~~~~~~~ii~DFD~TI 209 (499)
-++.|.+.-+++...+ ++.+++....+..++.-+-+-.-=..+... .. . +++.++|.||||.|
T Consensus 47 Lne~Y~~~k~~L~~al------l~k~e~K~~~K~~KK~~K~~~K~~k~~~k~-~~--------~--~~~r~~VldF~Gdi 109 (155)
T PF08496_consen 47 LNERYEDMKEQLKQAL------LDKKELKAWEKAEKKEEKAKAKAEKKAAKK-AK--------E--PKPRLFVLDFKGDI 109 (155)
T ss_pred HHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHHhhhhhhhhhc-cC--------C--CCCeEEEEecCCCc
Confidence 4566766666555433 456777777777777766554432222111 10 1 36779999999999
Q ss_pred ccccch
Q 010855 210 TAFDSS 215 (499)
Q Consensus 210 T~~DT~ 215 (499)
-...+-
T Consensus 110 ~A~~v~ 115 (155)
T PF08496_consen 110 KASEVE 115 (155)
T ss_pred cHHHHH
Confidence 865443
No 294
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=26.12 E-value=4.8e+02 Score=26.37 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=55.1
Q ss_pred cEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccc-cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcCC
Q 010855 343 DVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEI-VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGGS 421 (499)
Q Consensus 343 ~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~-~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGDs 421 (499)
.+.|+-.|--.--|..-|...|+..+.|+=++..-..+. ..+| ......|..|++...+.+...+. .-++-.+ ++
T Consensus 21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL-~rqf~~~~~dIGk~Kaea~~~~L~eLNp--~V~V~~~-~~ 96 (286)
T cd01491 21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL-SSQFYLREEDIGKNRAEASQARLAELNP--YVPVTVS-TG 96 (286)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc-ccCccCChHHhCHHHHHHHHHHHHHHCC--CCEEEEE-ec
Confidence 466665542222333334445766666655543322111 1111 11222355788777766666553 2233233 23
Q ss_pred cccHHHHHhcCccEEEcC-C-----chHHhhhhhhCCcccc
Q 010855 422 PGDLLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVP 456 (499)
Q Consensus 422 ~tDl~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p 456 (499)
..|-.-+...| +++.. . ..+-++|++.+++++-
T Consensus 97 ~~~~~~l~~fd--vVV~~~~~~~~~~~in~~c~~~~ipfI~ 135 (286)
T cd01491 97 PLTTDELLKFQ--VVVLTDASLEDQLKINEFCHSPGIKFIS 135 (286)
T ss_pred cCCHHHHhcCC--EEEEecCCHHHHHHHHHHHHHcCCEEEE
Confidence 34556677777 34433 2 2577899999998874
No 295
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=25.42 E-value=5.1e+02 Score=25.90 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHhhhHHHHHHHHHHHHhhhhccCCCHHHHHHHhh-cCCCChhHHH
Q 010855 285 ALKQLAYFEKNENSRVVQSGVLKGLNLEDIKWASQ-HLIFQDGCRR 329 (499)
Q Consensus 285 ~l~~l~~~e~~s~~rv~~~~~f~Gi~~~~l~~~~~-~i~lr~G~~e 329 (499)
.++-|++|-. +|.+.-++.|+++..+.+..+ ++-+++....
T Consensus 203 vI~TLr~Wgv----~vDEafFLgG~~K~~vL~~~~phIFFDDQ~~H 244 (264)
T PF06189_consen 203 VIRTLRSWGV----RVDEAFFLGGLPKGPVLKAFRPHIFFDDQDGH 244 (264)
T ss_pred HHHHHHHcCC----cHhHHHHhCCCchhHHHHhhCCCEeecCchhh
Confidence 3444555543 344556889999998888765 5666665543
No 296
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=25.42 E-value=5e+02 Score=25.04 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 328 RRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 328 ~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
.+.|+.++++| +.+.|.|+-- ...+...+++.++..--|.+|-.
T Consensus 26 ~~ai~~~~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~~~~I~~NGa 69 (272)
T PRK10530 26 LEALARAREAG---YKVIIVTGRH-HVAIHPFYQALALDTPAICCNGT 69 (272)
T ss_pred HHHHHHHHHCC---CEEEEEcCCC-hHHHHHHHHhcCCCCCEEEcCCc
Confidence 45577888999 9999999863 45677788777664333555543
No 297
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=25.15 E-value=1.6e+02 Score=27.89 Aligned_cols=45 Identities=11% Similarity=-0.130 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEee
Q 010855 325 DGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSN 373 (499)
Q Consensus 325 ~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN 373 (499)
|...+.|+.++++| +++.|.|+- +...+..++...+++.--|.+|
T Consensus 23 ~~~~~al~~l~~~G---~~~~iaTGR-~~~~~~~~~~~l~~~~~~i~~n 67 (230)
T PRK01158 23 LKAVEAIRKAEKLG---IPVILATGN-VLCFARAAAKLIGTSGPVIAEN 67 (230)
T ss_pred HHHHHHHHHHHHCC---CEEEEEcCC-chHHHHHHHHHhCCCCcEEEec
Confidence 33445677888899 999999986 3456777777766643334455
No 298
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=25.05 E-value=2.2e+02 Score=25.34 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=36.3
Q ss_pred hcCCCChhHHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCC
Q 010855 319 QHLIFQDGCRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDL 365 (499)
Q Consensus 319 ~~i~lr~G~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl 365 (499)
..+.+-+.....|..++++| +.+.+.|-+|...+....|+.+.+
T Consensus 41 ~e~~fY~Di~rIL~dLk~~G---Vtl~~ASRt~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLG---VTLIHASRTMAPQIASQGLETFKV 84 (144)
T ss_pred ceeeeccchhHHHHHHHhcC---cEEEEecCCCCHHHHHHHHHHhcc
Confidence 34566667777888999999 999999999999999999887644
No 299
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=24.06 E-value=3.9e+02 Score=25.39 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=32.8
Q ss_pred CceEEEEcCCcccH------HHHHhcCccEEEcCC------chHHhhhhhhCCccccc
Q 010855 412 QNLTVYIGGSPGDL------LCLLEADIGIVIGSS------SSLRRLGDHFGVSFVPL 457 (499)
Q Consensus 412 ~~~vIyiGDs~tDl------~~l~~Adigiv~~~~------~~L~~~~~~~gi~~~p~ 457 (499)
+..||++|++..+- ..+..||+=|++|.+ ..|.+.+++.|.+++-+
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~i 188 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIV 188 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEE
Confidence 56899999998763 234568877777765 25777778888776644
No 300
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=23.76 E-value=1.7e+02 Score=28.43 Aligned_cols=45 Identities=7% Similarity=-0.123 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeece
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNEL 375 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l 375 (499)
..+.++.++++| ++++++|+- +..-+...+++.++..--|-+|-.
T Consensus 21 ~~~~i~~l~~~g---~~~~~~TgR-~~~~~~~~~~~~~~~~~~I~~NGa 65 (256)
T TIGR01486 21 AKEVLERLQELG---IPVIPCTSK-TAAEVEYLRKELGLEDPFIVENGG 65 (256)
T ss_pred HHHHHHHHHHCC---CeEEEEcCC-CHHHHHHHHHHcCCCCcEEEcCCe
Confidence 456788889999 999999976 466788888887764334455543
No 301
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=23.61 E-value=42 Score=30.81 Aligned_cols=13 Identities=31% Similarity=0.260 Sum_probs=11.3
Q ss_pred eEEEEeCCccccc
Q 010855 199 LTLFCDFDWTCTA 211 (499)
Q Consensus 199 ~~ii~DFD~TIT~ 211 (499)
..+++|.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 3789999999994
No 302
>PRK10444 UMP phosphatase; Provisional
Probab=23.37 E-value=1.3e+02 Score=29.45 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHcCCCcccEEEEeccCC--hHHHHHHHHcCCC
Q 010855 324 QDGCRRFFQNTIKSTNFKTDVHVLSYCWC--GDLIRSAFASGDL 365 (499)
Q Consensus 324 r~G~~efl~~l~~~g~~~~~~~IVS~g~s--~~~I~~~L~~~gl 365 (499)
-||..++++.++++| .+++++|.+-+ ..-+...|+..|+
T Consensus 19 ~p~a~~~l~~L~~~g---~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 19 VPGAAEFLHRILDKG---LPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CccHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 578889999999999 89999998743 2233344555665
No 303
>PRK08328 hypothetical protein; Provisional
Probab=23.36 E-value=4.9e+02 Score=25.14 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=51.5
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeecccc-ccCCChh-hhHHHHHHHHhhcCCCCCceEE-EE
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIV-NKLESPL-EKLQAFNDILKDHSNDEQNLTV-YI 418 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~-~~~~~g~-~K~~~l~~~~~~~~~~~~~~vI-yi 418 (499)
..+.|+-.|--+-.|...|...|+..+.++=....-..+ +.-++. .....|. -|....++.+...+.+ -++- +.
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sN-L~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~--v~v~~~~ 104 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSN-LNRQILHWEEDLGKNPKPLSAKWKLERFNSD--IKIETFV 104 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhh-hccccccChhhcCchHHHHHHHHHHHHhCCC--CEEEEEe
Confidence 467777766334455566666687666655222111001 111111 1112233 3666655444433321 2222 33
Q ss_pred cC-CcccH-HHHHhcCccEEEcC-C-----chHHhhhhhhCCccc
Q 010855 419 GG-SPGDL-LCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFV 455 (499)
Q Consensus 419 GD-s~tDl-~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~ 455 (499)
+. +..++ ..+...| +++.. + ..+.++|++.|+|++
T Consensus 105 ~~~~~~~~~~~l~~~D--~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 105 GRLSEENIDEVLKGVD--VIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred ccCCHHHHHHHHhcCC--EEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 32 11122 2455666 55543 2 247788999999976
No 304
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=23.20 E-value=1.5e+02 Score=31.57 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccC-ChHHHHHHHHcCCCCc----eEEEeeceEeeCCeeeccccccCCChhhhHHHHH
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCW-CGDLIRSAFASGDLNA----FRVHSNELVYEESISTGEIVNKLESPLEKLQAFN 401 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~-s~~~I~~~L~~~gl~~----~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~ 401 (499)
..++++.. +.| .++.|.|++= ++.+|+..|+...-.+ ++--||...-. |-||| ++..+=.+.+.
T Consensus 4 l~~lv~~~-k~G---~~~gI~SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~-GGYTG------mtP~dF~~~V~ 72 (424)
T PF08013_consen 4 LKELVKRH-KAG---EPVGIYSVCSAHPLVIEAALERAKEDDSPVLIEATSNQVNQF-GGYTG------MTPADFRDFVR 72 (424)
T ss_dssp -HHHHHHH-HTT-----B-EEEE----HHHHHHHHHHCCCS-S-EEEEEETTTCSTT--TTTT------B-HHHHHHHHH
T ss_pred HHHHHHHH-hCC---CCCceEEecCCCHHHHHHHHHHHHhcCCeEEEEecccccccc-CCcCC------CCHHHHHHHHH
Confidence 45666644 456 6788888862 2458888887532111 23446665443 33555 34445566777
Q ss_pred HHHhhcCCCCCceEEEEcCCcc
Q 010855 402 DILKDHSNDEQNLTVYIGGSPG 423 (499)
Q Consensus 402 ~~~~~~~~~~~~~vIyiGDs~t 423 (499)
++....+.+ ..++|.-||..+
T Consensus 73 ~iA~~~g~~-~~~iiLGGDHLG 93 (424)
T PF08013_consen 73 EIADEVGFP-RDRIILGGDHLG 93 (424)
T ss_dssp HHHHHCT---GGGEEEEEEEES
T ss_pred HHHHHcCCc-hhhEEecCCCCC
Confidence 777776653 457899999765
No 305
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=23.19 E-value=49 Score=31.66 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=34.6
Q ss_pred CChhhhHHHHHHHHhhcCCCCCceEEEEcC----CcccHHHHHhcC-ccEEEcCCchHHhhhhh
Q 010855 391 ESPLEKLQAFNDILKDHSNDEQNLTVYIGG----SPGDLLCLLEAD-IGIVIGSSSSLRRLGDH 449 (499)
Q Consensus 391 ~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD----s~tDl~~l~~Ad-igiv~~~~~~L~~~~~~ 449 (499)
+.|.||.--|+.+-.+ ....+.++|| |-||.+-..... +|.-+.+.....+.|++
T Consensus 189 P~GWDKtyCLqhle~d----gf~~IhFFGDkT~~GGNDyEIf~dprtiGhsV~~PdDT~~~~~~ 248 (252)
T KOG3189|consen 189 PKGWDKTYCLQHLEKD----GFDTIHFFGDKTMPGGNDYEIFADPRTIGHSVTSPDDTVRICEE 248 (252)
T ss_pred CCCcchhHHHHHhhhc----CCceEEEeccccCCCCCcceeeeCCccccccccCchHHHHHHHH
Confidence 4677887666655542 2345668888 568888777766 46666655455555543
No 306
>PF15565 Imm16: Immunity protein 16
Probab=22.40 E-value=1.2e+02 Score=25.94 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Q 010855 136 ESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKLHVNF 174 (499)
Q Consensus 136 ~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~lE~~F 174 (499)
+-+..++++|++++...+.+-...+-.+|--.+.+|++|
T Consensus 13 ~e~e~Fe~~L~~l~~~~d~~~I~~L~~~F~D~~d~eVmf 51 (106)
T PF15565_consen 13 EECEEFEEALNELAKYPDNDVIDDLCLIFDDETDHEVMF 51 (106)
T ss_pred HHHHHHHHHHHHHHhcCCHhHHHHHHHHhcCccchHHHH
Confidence 347889999999999999999999999999888888877
No 307
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=22.31 E-value=5.2e+02 Score=25.01 Aligned_cols=36 Identities=3% Similarity=-0.111 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCC
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLN 366 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~ 366 (499)
..+.|+.++++| +.+.|.|+-- ..-+..++++.++.
T Consensus 25 ~~~ai~~l~~~G---~~~~iaTGR~-~~~~~~~~~~l~~~ 60 (270)
T PRK10513 25 VKQAIAAARAKG---VNVVLTTGRP-YAGVHRYLKELHME 60 (270)
T ss_pred HHHHHHHHHHCC---CEEEEecCCC-hHHHHHHHHHhCCC
Confidence 345688889999 9999999863 45677778777653
No 308
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=22.30 E-value=2.6e+02 Score=29.88 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCCcccEEEEecc-CChHHHHHHHHcC---CCC-ceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHH
Q 010855 329 RFFQNTIKSTNFKTDVHVLSYC-WCGDLIRSAFASG---DLN-AFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDI 403 (499)
Q Consensus 329 efl~~l~~~g~~~~~~~IVS~g-~s~~~I~~~L~~~---gl~-~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~ 403 (499)
++++.++. | .++.|.|+| -++..|+..|+.. +.+ -+.--||....+|| ||| ++..+=.+.+.++
T Consensus 6 ~~~~~~k~-g---~~~gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GG-YTG------mtP~dF~~~V~~i 74 (426)
T PRK15458 6 EMVQQHKA-G---KTNGIYAVCSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGG-YTG------MTPADFRGFVCQL 74 (426)
T ss_pred HHHHhhcc-C---CCceEEEecCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCC-cCC------CCHHHHHHHHHHH
Confidence 45555543 4 577888876 2355888877542 221 13445777665544 466 4555556677777
Q ss_pred HhhcCCCCCceEEEEcCCccc
Q 010855 404 LKDHSNDEQNLTVYIGGSPGD 424 (499)
Q Consensus 404 ~~~~~~~~~~~vIyiGDs~tD 424 (499)
....+.+ .+++|.-||..+=
T Consensus 75 A~~~gf~-~~~iiLGGDHLGP 94 (426)
T PRK15458 75 ADSLNFP-QEALILGGDHLGP 94 (426)
T ss_pred HHHcCCC-hhhEEeecCCCCC
Confidence 7776653 3578899998775
No 309
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=22.19 E-value=2.4e+02 Score=30.03 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCcccEEEEecc-CChHHHHHHHHcC---CCCc-eEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHH
Q 010855 330 FFQNTIKSTNFKTDVHVLSYC-WCGDLIRSAFASG---DLNA-FRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDIL 404 (499)
Q Consensus 330 fl~~l~~~g~~~~~~~IVS~g-~s~~~I~~~L~~~---gl~~-~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~ 404 (499)
+++.++. | .++.|.|+| -++..|+..|+.. +.+. +.--||....+|| ||| ++..+=.+.+.++.
T Consensus 3 ~~~~~~~-g---~~~gI~sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GG-YTG------mtP~dF~~~V~~iA 71 (420)
T TIGR02810 3 LARRHKA-G---EPRGIYSVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGG-YTG------MTPADFRDFVETIA 71 (420)
T ss_pred hhhhhhc-C---CCCeEEEECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCC-cCC------CCHHHHHHHHHHHH
Confidence 3444443 5 577888886 2356888877542 2221 3345777665544 466 45555566777777
Q ss_pred hhcCCCCCceEEEEcCCccc
Q 010855 405 KDHSNDEQNLTVYIGGSPGD 424 (499)
Q Consensus 405 ~~~~~~~~~~vIyiGDs~tD 424 (499)
...+.+ .+++|.-||..+=
T Consensus 72 ~~~gf~-~~~iiLggDHlGP 90 (420)
T TIGR02810 72 DRIGFP-RDRLILGGDHLGP 90 (420)
T ss_pred HHcCCC-hhcEEeecCCCCC
Confidence 766653 3578899998764
No 310
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.46 E-value=1.5e+02 Score=23.97 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 010855 132 QSFQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKL 170 (499)
Q Consensus 132 ~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~l 170 (499)
..|++...+++++++++-. .+-.++...+.|.+++.|
T Consensus 10 ~sfEea~~~LEeIv~~LE~--~~l~Lees~~lyeeg~~L 46 (80)
T PRK00977 10 LSFEEALAELEEIVTRLES--GDLPLEESLAAFERGVAL 46 (80)
T ss_pred CCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHH
Confidence 4699999999999999842 223577888888888876
No 311
>PRK10976 putative hydrolase; Provisional
Probab=21.42 E-value=2.1e+02 Score=27.86 Aligned_cols=44 Identities=5% Similarity=-0.042 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCcccEEEEeccCChHHHHHHHHcCCCCceEEEeec
Q 010855 327 CRRFFQNTIKSTNFKTDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNE 374 (499)
Q Consensus 327 ~~efl~~l~~~g~~~~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~ 374 (499)
..+.|+.++++| +.+.|.|+- +...+.++++..+++..-|.+|-
T Consensus 24 ~~~ai~~l~~~G---~~~~iaTGR-~~~~~~~~~~~l~~~~~~I~~NG 67 (266)
T PRK10976 24 AKETLKLLTARG---IHFVFATGR-HHVDVGQIRDNLEIKSYMITSNG 67 (266)
T ss_pred HHHHHHHHHHCC---CEEEEEcCC-ChHHHHHHHHhcCCCCeEEEcCC
Confidence 345677888899 999999986 34566777777665422233443
No 312
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.26 E-value=6.5e+02 Score=24.47 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHcCCCccc-EEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccccccCCChhhhHHHHHHHH
Q 010855 326 GCRRFFQNTIKSTNFKTD-VHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEIVNKLESPLEKLQAFNDIL 404 (499)
Q Consensus 326 G~~efl~~l~~~g~~~~~-~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~~~~~~~g~~K~~~l~~~~ 404 (499)
...++++.++++| .. +.+++-+=+.+.|+.+++.. .+.+.+++- +|. ||.-........+|.+.++++.
T Consensus 117 e~~~~~~~~~~~g---~~~i~~i~P~T~~~~i~~i~~~~-~~~vy~~s~-----~g~-tG~~~~~~~~~~~~i~~lr~~~ 186 (242)
T cd04724 117 EAEEFREAAKEYG---LDLIFLVAPTTPDERIKKIAELA-SGFIYYVSR-----TGV-TGARTELPDDLKELIKRIRKYT 186 (242)
T ss_pred HHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHHHhhC-CCCEEEEeC-----CCC-CCCccCCChhHHHHHHHHHhcC
Confidence 5678899999998 54 44577765556788887632 223444332 121 2211111223345666555532
Q ss_pred hhcCCCCCceEEEEcCCcc---cHHHHHh-cCccEEEcCCchHHhhhhh
Q 010855 405 KDHSNDEQNLTVYIGGSPG---DLLCLLE-ADIGIVIGSSSSLRRLGDH 449 (499)
Q Consensus 405 ~~~~~~~~~~vIyiGDs~t---Dl~~l~~-Adigiv~~~~~~L~~~~~~ 449 (499)
..-|.+|=|.+ ++..+.. || |++++. .+.+....
T Consensus 187 --------~~pI~vggGI~~~e~~~~~~~~AD-gvVvGS--aiv~~~~~ 224 (242)
T cd04724 187 --------DLPIAVGFGISTPEQAAEVAKYAD-GVIVGS--ALVKIIEE 224 (242)
T ss_pred --------CCcEEEEccCCCHHHHHHHHccCC-EEEECH--HHHHHHHh
Confidence 23478888888 4545444 55 778763 56555544
No 313
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.26 E-value=1.5e+02 Score=23.72 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 010855 132 QSFQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKL 170 (499)
Q Consensus 132 ~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~l 170 (499)
..|++...++++++.++-. .+--++...+.|.+++.|
T Consensus 6 ~sfEeal~~Le~IV~~LE~--gdl~Leesl~lyeeG~~L 42 (76)
T PRK14068 6 QSFEEMMQELEQIVQKLDN--ETVSLEESLDLYQRGMKL 42 (76)
T ss_pred cCHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4799999999999999842 223577888888888775
No 314
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=20.74 E-value=7.1e+02 Score=23.38 Aligned_cols=110 Identities=10% Similarity=0.120 Sum_probs=56.5
Q ss_pred ccEEEEeccCChHHHHHHHHcCCCCceEEEeeceEeeCCeeeccc-cccCCChhhhHHHHHHHHhhcCCCCCceEEEEcC
Q 010855 342 TDVHVLSYCWCGDLIRSAFASGDLNAFRVHSNELVYEESISTGEI-VNKLESPLEKLQAFNDILKDHSNDEQNLTVYIGG 420 (499)
Q Consensus 342 ~~~~IVS~g~s~~~I~~~L~~~gl~~~~I~aN~l~~~~g~~tG~~-~~~~~~g~~K~~~l~~~~~~~~~~~~~~vIyiGD 420 (499)
..+.||-.|--+-.+-..|...|+..+.++=....-..+. .-++ -.....|..|+..+.+.+...+. .-++-.+-.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL-~Rq~l~~~~diG~~Ka~~~~~~l~~~np--~v~i~~~~~ 98 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNL-QRQILFTEEDVGRPKVEVAAQRLRELNS--DIQVTALKE 98 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccch-hhhhccChhhCCChHHHHHHHHHHHhCC--CCEEEEehh
Confidence 4567776653244455555566765555443332211111 1111 11122356788888777765443 223334444
Q ss_pred Cccc---HHHHHhcCccEEEcC-C-----chHHhhhhhhCCcccc
Q 010855 421 SPGD---LLCLLEADIGIVIGS-S-----SSLRRLGDHFGVSFVP 456 (499)
Q Consensus 421 s~tD---l~~l~~Adigiv~~~-~-----~~L~~~~~~~gi~~~p 456 (499)
..++ ...+..+| ++|.. + ..+.++|++.++|++-
T Consensus 99 ~i~~~~~~~~~~~~D--~Vi~~~d~~~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 99 RVTAENLELLINNVD--LVLDCTDNFATRYLINDACVALGTPLIS 141 (202)
T ss_pred cCCHHHHHHHHhCCC--EEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4332 23456677 45543 2 2477899999988764
No 315
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.73 E-value=4.6e+02 Score=29.63 Aligned_cols=41 Identities=17% Similarity=-0.055 Sum_probs=25.0
Q ss_pred ceEEEEcCCcccHHHHHhcCccEEEcC-----CchHHhhhhhhCCcccccc
Q 010855 413 NLTVYIGGSPGDLLCLLEADIGIVIGS-----SSSLRRLGDHFGVSFVPLF 458 (499)
Q Consensus 413 ~~vIyiGDs~tDl~~l~~Adigiv~~~-----~~~L~~~~~~~gi~~~p~~ 458 (499)
..+.+.+|-...- .++-|=|.+ ......++.++|.|++|..
T Consensus 546 ~~v~il~Dq~~~~-----~~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~ 591 (656)
T PRK15174 546 QSLVVAIDGALNL-----SAPTIDFFGQQITYSTFCSRLAWKMHLPTVFSV 591 (656)
T ss_pred CeEEEEeCCCCCC-----CCceeccCCCccCcCcHHHHHHHHHCCCEEEeE
Confidence 4566898887321 122122222 2356788899999999875
No 316
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=20.41 E-value=1.6e+02 Score=29.17 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHcCCCcccEEEEeccC--ChHHHHHHHHcCCC
Q 010855 324 QDGCRRFFQNTIKSTNFKTDVHVLSYCW--CGDLIRSAFASGDL 365 (499)
Q Consensus 324 r~G~~efl~~l~~~g~~~~~~~IVS~g~--s~~~I~~~L~~~gl 365 (499)
-||+.++|+.++++| ++++++|.+= +..-+...|+..|+
T Consensus 20 ~~ga~e~l~~L~~~g---~~~~~~Tnns~~~~~~~~~~l~~~G~ 60 (279)
T TIGR01452 20 VPGAPELLDRLARAG---KAALFVTNNSTKSRAEYALKFARLGF 60 (279)
T ss_pred CcCHHHHHHHHHHCC---CeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 356777888888888 8999999862 12222244566665
No 317
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.23 E-value=1.7e+02 Score=23.74 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 010855 132 QSFQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKL 170 (499)
Q Consensus 132 ~~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~l 170 (499)
..|++...+++++++++-.. +-.++...+.|.+++.|
T Consensus 7 ~sfEeal~~LEeIV~~LE~~--~l~Lees~~lyeeG~~L 43 (80)
T PRK14067 7 ADFEQQLARLQEIVDALEGG--DLPLEESVALYKEGLGL 43 (80)
T ss_pred CCHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHH
Confidence 47999999999999998422 22467777778777765
No 318
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=20.09 E-value=1.7e+02 Score=22.70 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Q 010855 133 SFQESALQTEELLDKLSVLLTGEELEVIKKLYYKAIKL 170 (499)
Q Consensus 133 ~f~~~~~~~~~~ld~l~~~~~~~e~~~~~~~F~~a~~l 170 (499)
.|++...+++.++.++-. .+-.++.+.+.|.+++.|
T Consensus 2 sfEe~l~~Le~Iv~~LE~--~~l~Leesl~lyeeG~~L 37 (67)
T TIGR01280 2 SFEEALSELEQIVQKLES--GDLALEEALNLFERGMAL 37 (67)
T ss_pred CHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHH
Confidence 488899999999998842 222577888888888776
Done!