BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010856
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 145/351 (41%), Gaps = 57/351 (16%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+SNC L ++LS N L G +P +S+G+LS L D +++ + G IP+E+ + +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIP-SSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETL 468
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
L N L G IP LS +N+L G IP I L L L L N SG++P
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSS-------------------- 159
A + SL + L +N ++P + + NF +
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 588
Query: 160 -------------NFLTSPLPLEI-------------GNLKVLIGIDFSMNNFSGVIPTE 193
N L++ P I N ++ +D S N SG IP E
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNL 253
IG + L L LG+N + GSIPD GDL G IP ++ L+ L ++L
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 254 SFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTS-----IHH 299
S N L G IP G F F F N LCG P +P C S HH
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPSNADGYAHH 756
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 122/293 (41%), Gaps = 34/293 (11%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNS-TI 59
+S C L L+ +S+N G +P + SL+ + +G IP+ +S ++ T
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLPL----KSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 60 VNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIP-DDICHLAELYRLDLDGNKLSGS 118
++L GN G++P N G +P D + + L LDL N+ SG
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 119 LPACFSNLT-SLRIVSLGSNKLT---------------------------SVPLTFWNLK 150
LP +NL+ SL + L SN + +P T N
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 151 DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
++++L+ S N+L+ +P +G+L L + +N G IP E+ +K LE L L +N L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 211 QGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEGEIP 263
G IP + G IP + +L L L LS N G IP
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 83/207 (40%), Gaps = 34/207 (16%)
Query: 93 GSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDI 152
G + D C EL L + GNK+SG + S +L + + SN ++ + +
Sbjct: 167 GWVLSDGC--GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 222
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
+L+ S N L+ I L ++ S N F G IP LK+L+YL L N+ G
Sbjct: 223 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTG 280
Query: 213 SIPD-------------------------SFGDLIXXXXXXXXXXXXXGAIPA-SLEKLS 246
IPD FG G +P +L K+
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFSA 273
L+ L+LSFN+ GE+P S N SA
Sbjct: 341 GLKVLDLSFNEFSGELPE--SLTNLSA 365
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 143/343 (41%), Gaps = 52/343 (15%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+SNC L ++LS N L G +P +S+G+LS L D +++ + G IP+E+ + +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIP-SSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETL 471
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
L N L G IP LS +N+L G IP I L L L L N SG++P
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 121 ACFSNLTSLRIVSLGSNKLT-SVPLTFWNLKDILNLNFSS-------------------- 159
A + SL + L +N ++P + + NF +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591
Query: 160 -------------NFLTSPLPLEI-------------GNLKVLIGIDFSMNNFSGVIPTE 193
N L++ P I N ++ +D S N SG IP E
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 194 IGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNL 253
IG + L L LG+N + GSIPD GDL G IP ++ L+ L ++L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 254 SFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQVPPCKTS 296
S N L G IP G F F F N LCG P +P C S
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP---LPRCDPS 751
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 122/293 (41%), Gaps = 34/293 (11%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNS-TI 59
+S C L L+ +S+N G +P + SL+ + +G IP+ +S ++ T
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPL----KSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 60 VNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIP-DDICHLAELYRLDLDGNKLSGS 118
++L GN G++P N G +P D + + L LDL N+ SG
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 119 LPACFSNLT-SLRIVSLGSNKLT---------------------------SVPLTFWNLK 150
LP +NL+ SL + L SN + +P T N
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 151 DILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
++++L+ S N+L+ +P +G+L L + +N G IP E+ +K LE L L +N L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 211 QGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEGEIP 263
G IP + G IP + +L L L LS N G IP
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 34/208 (16%)
Query: 93 GSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDI 152
G + D C EL L + GNK+SG + S +L + + SN ++ + +
Sbjct: 170 GWVLSDGC--GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
+L+ S N L+ I L ++ S N F G IP LK+L+YL L N+ G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283
Query: 213 SIPD-------------------------SFGDLIXXXXXXXXXXXXXGAIPA-SLEKLS 246
IPD FG G +P +L K+
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343
Query: 247 YLENLNLSFNKLEGEIPRGGSFGNFSAE 274
L+ L+LSFN+ GE+P S N SA
Sbjct: 344 GLKVLDLSFNEFSGELPE--SLTNLSAS 369
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/270 (28%), Positives = 125/270 (46%), Gaps = 15/270 (5%)
Query: 34 EDFRMYNCNISG-------GIPEEISNLTNSTIVNLGG-NKLNGSIPITLSXXXXXXXXX 85
+ +R+ N ++SG IP ++NL + +GG N L G IP ++
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 86 XEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-SVPL 144
+ G+IPD + + L LD N LSG+LP S+L +L ++ N+++ ++P
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 145 TFWNLKDIL-NLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 203
++ + + ++ S N LT +P NL + +D S N G G KN + +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 204 FLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEGEIP 263
L N L + G G +P L +L +L +LN+SFN L GEIP
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 264 RGGSFGNFSAESFEGNELLCGSPNLQVPPC 293
+GG+ F ++ N+ LCGSP +P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSP---LPAC 312
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 10/177 (5%)
Query: 94 SIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-TFWNLKD 151
+IP +I A+ +LDL NKLS SLP+ F LT LR++ L NKL ++P F LK+
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 152 ILNLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
+ L + N L + LP+ + L L + N + P L L YL LGYN L
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 211 QGSIPDSFGDLIXXXXXXXXXXXXXGAIP-ASLEKLSYLENLNLSFNKLEGEIPRGG 266
Q S+P D + +P + +KL+ L+ L L N+L+ +P G
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 88 DNKLEG---SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL 144
DNKL+ + D + +LAEL LD N+L P F +LT L +SLG N+L S+P
Sbjct: 94 DNKLQALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150
Query: 145 -TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 203
F L + L +N L L L + N V L+ L+ L
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 204 FLGYN 208
L N
Sbjct: 211 QLQEN 215
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 349 RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE-SFDVE 407
+ FS EL A+D FS N++G+GGFG VYK RL D VAVK + + E F E
Sbjct: 26 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 408 CEMMKNIRHRNLIKI 422
EM+ HRNL+++
Sbjct: 86 VEMISMAVHRNLLRL 100
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 349 RTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFE-SFDVE 407
+ FS EL A+D F N++G+GGFG VYK RL D VAVK + + E F E
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 408 CEMMKNIRHRNLIKI 422
EM+ HRNL+++
Sbjct: 78 VEMISMAVHRNLLRL 92
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 109 DLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPLP 167
DL +K+ L + FS+ T L ++L N++ + FW L +L LN S NFL S
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 168 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
NL L +D S N+ + GL NL+ L L N+L+ S+PD D
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNL-------QCGRAFESFDVECEM 410
A +E IGKGGFG V+K RL D+ VA+K L + F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 411 MKNIRHRNLIKILHGV------AVITFTVCLCLFH 439
M N+ H N++K L+G+ V+ F C L+H
Sbjct: 77 MSNLNHPNIVK-LYGLMHNPPRMVMEFVPCGDLYH 110
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNL-------QCGRAFESFDVECEM 410
A +E IGKGGFG V+K RL D+ VA+K L + F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 411 MKNIRHRNLIKILHGV------AVITFTVCLCLFH 439
M N+ H N++K L+G+ V+ F C L+H
Sbjct: 77 MSNLNHPNIVK-LYGLMHNPPRMVMEFVPCGDLYH 110
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARL-GDRMEVAVKVFNL-------QCGRAFESFDVECEM 410
A +E IGKGGFG V+K RL D+ VA+K L + F+ F E +
Sbjct: 17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76
Query: 411 MKNIRHRNLIKILHGV------AVITFTVCLCLFH 439
M N+ H N++K L+G+ V+ F C L+H
Sbjct: 77 MSNLNHPNIVK-LYGLMHNPPRMVMEFVPCGDLYH 110
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
+ +FS+ EL T+ F E N +G+GGFG VYK + + VAVK + ++
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
+ FD E ++M +H NL+++L
Sbjct: 71 EELKQQFDQEIKVMAKCQHENLVELL 96
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
+ +FS+ EL T+ F E N +G+GGFG VYK + + VAVK + ++
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 70
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
+ FD E ++M +H NL+++L
Sbjct: 71 EELKQQFDQEIKVMAKCQHENLVELL 96
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
+ +FS+ EL T+ F E N +G+GGFG VYK + + VAVK + ++
Sbjct: 6 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 64
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
+ FD E ++M +H NL+++L
Sbjct: 65 EELKQQFDQEIKVMAKCQHENLVELL 90
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 105 LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTS 164
L RL L+GN L+ LPA NL++LR++ L N+LTS+P + + F N +T+
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT 307
Query: 165 PLPLEIGNL 173
LP E GNL
Sbjct: 308 -LPWEFGNL 315
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 89 NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFW 147
N+++ D+ L L+L+ N +S P F+NL +LR + L SN+L +PL F
Sbjct: 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 148 NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 205
L ++ L+ S N + L +L L ++ N+ + GL +LE L L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 43/207 (20%)
Query: 7 LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNK 66
LT I SNN L I P + NL+ L D M N I+ P ++NLTN T + L N+
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTK-LVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 67 LNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNL 126
+ P+ +L L RL+L N +S + S L
Sbjct: 119 ITDIDPL--------------------------KNLTNLNRLELSSNTISD--ISALSGL 150
Query: 127 TSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPL-EIGNLKVLIGIDFSMN 184
TSL+ +S SN++T + PL NL + L+ SSN ++ L ++ NL+ LI + N
Sbjct: 151 TSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISVLAKLTNLESLIATN---N 205
Query: 185 NFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
S + P +G L NL+ L L N+L+
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQLK 230
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 53/255 (20%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 134
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N + S LS N++ P + +L L RLD+ NK+S S+
Sbjct: 135 ELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 190
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 249
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 250 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 308 TYLTLYFNNISDISP 322
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 94 SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
S+P I A+ +LDL L+ A F LT L ++L N+L ++ F +L ++
Sbjct: 28 SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
L ++N L S LPL + L L+ L+LG N+L+
Sbjct: 86 GTLGLANNQLAS-LPLGV-----------------------FDHLTQLDKLYLGGNQLK- 120
Query: 213 SIPDSFGDLIXXXXXXXXXXXXXGAIPA-SLEKLSYLENLNLSFNKLEGEIPRGG--SFG 269
S+P D + +IPA + +KL+ L+ L+LS N+L+ +P G G
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179
Query: 270 NFSAESFEGNELLC 283
+ GN+ C
Sbjct: 180 KLQTITLFGNQFDC 193
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 96/207 (46%), Gaps = 43/207 (20%)
Query: 7 LTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVNLGGNK 66
LT I SNN L I P + NL+ L D M N I+ P ++NLTN T + L N+
Sbjct: 65 LTQINFSNNQLTDITP---LKNLTK-LVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 67 LNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNL 126
+ P+ +L L RL+L N +S + S L
Sbjct: 119 ITDIDPL--------------------------KNLTNLNRLELSSNTISD--ISALSGL 150
Query: 127 TSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPL-EIGNLKVLIGIDFSMN 184
TSL+ +S SN++T + PL NL + L+ SSN ++ L ++ NL+ LI + N
Sbjct: 151 TSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISVLAKLTNLESLIATN---N 205
Query: 185 NFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
S + P +G L NL+ L L N+L+
Sbjct: 206 QISDITP--LGILTNLDELSLNGNQLK 230
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 53/255 (20%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 134
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N + S LS N++ P + +L L RLD+ NK+S S+
Sbjct: 135 ELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 190
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 249
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 250 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 308 TYLTLYFNNISDISP 322
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 32/194 (16%)
Query: 94 SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
S+P I A+ +LDL L+ A F LT L ++L N+L ++ F +L ++
Sbjct: 28 SVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
L ++N L S LPL + L L+ L+LG N+L+
Sbjct: 86 GTLGLANNQLAS-LPLGV-----------------------FDHLTQLDKLYLGGNQLK- 120
Query: 213 SIPDSFGDLIXXXXXXXXXXXXXGAIPA-SLEKLSYLENLNLSFNKLEGEIPRGG--SFG 269
S+P D + +IPA + +KL+ L+ L+LS N+L+ +P G G
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179
Query: 270 NFSAESFEGNELLC 283
+ GN+ C
Sbjct: 180 KLQTITLFGNQFDC 193
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 348 WRTFSYLELFRATDEFSEN------NLIGKGGFGSVYKARLGDRMEVAVK----VFNLQC 397
+ +FS+ EL T+ F E N G+GGFG VYK + + VAVK + ++
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTT-VAVKKLAAMVDITT 61
Query: 398 GRAFESFDVECEMMKNIRHRNLIKIL 423
+ FD E ++ +H NL+++L
Sbjct: 62 EELKQQFDQEIKVXAKCQHENLVELL 87
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 31/187 (16%)
Query: 2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIVN 61
S + L +Y+S N L I P NL SL + R+++ I S L N +
Sbjct: 99 SPLRKLQKLYISKNHLVEIPP-----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153
Query: 62 LGGNKLNGS------------------------IPITLSXXXXXXXXXXEDNKLEGSIPD 97
+GGN L S IP L + NK++ +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHL--DHNKIQAIELE 211
Query: 98 DICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF 157
D+ ++LYRL L N++ S L +LR + L +NKL+ VP +LK + +
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYL 271
Query: 158 SSNFLTS 164
+N +T
Sbjct: 272 HTNNITK 278
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 97 DDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLN 156
DD L LY L L NK+S FS L L+ + + N L +P + ++ L
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELR 129
Query: 157 FSSNFLTSPLPLEIGNLKVLIGIDFSMNNF--SGVIPTEIGGLKNLEYLFLGYNRLQG-- 212
N + L+ + I+ N SG P GLK L YL + +L G
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIP 188
Query: 213 -SIPDSFGDL 221
+P++ +L
Sbjct: 189 KDLPETLNEL 198
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 89 NKLEGSIPDDICHLAELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVP-LTF 146
KLE + D + +L ELY L N+L G+LP F +LT L ++ LG+N+LT +P F
Sbjct: 53 TKLEPGVFDSLINLKELY---LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 205
L + L N LT LP I L L + N + L +L + +L
Sbjct: 109 DRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 5/128 (3%)
Query: 89 NKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFW 147
+K S+P I A++ L L N+++ P F +L +L+ + LGSN+L ++P+ F
Sbjct: 28 SKRHASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 148 NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 207
+L + L+ +N LT LP + + V + F N +P I L +L +L L
Sbjct: 86 SLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144
Query: 208 NRLQGSIP 215
N+L+ SIP
Sbjct: 145 NQLK-SIP 151
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ V + + G+AF+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGEL-VAIKKVLQGKAFK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ V + + G+AF+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGEL-VAIKKVLQGKAFK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ V + + G+AF+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGEL-VAIKKVLQGKAFK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNF 161
A R+ L GN++S A F +L I+ L SN L + F L + L+ S N
Sbjct: 31 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 90
Query: 162 -LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
L S P L L + + P GL L+YL+L N LQ D+F D
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 150
Query: 221 L 221
L
Sbjct: 151 L 151
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Query: 4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMY-NCNISGGIPEEISNLTNSTIVNL 62
C++LT+++L +N L I G LE + N + P L ++L
Sbjct: 54 CRNLTILWLHSNVLARIDAAAFTG--LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 111
Query: 63 GGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICH-LAELYRLDLDGNKLSGSLPA 121
L P +DN L+ ++PDD L L L L GN++S
Sbjct: 112 DRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 170
Query: 122 CFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLE 169
F L SL + L N++ V P F +L ++ L +N L++ LP E
Sbjct: 171 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE 218
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 354 LELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMK 412
LE DE + ++GKG +G VY R L +++ +A+K + R + E + K
Sbjct: 1 LEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHK 60
Query: 413 NIRHRNLIKIL 423
+++H+N+++ L
Sbjct: 61 HLKHKNIVQYL 71
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNF 161
A R+ L GN++S A F +L I+ L SN L + F L + L+ S N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 162 -LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
L S P L L + + P GL L+YL+L N LQ D+F D
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 221 L 221
L
Sbjct: 152 L 152
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 7/169 (4%)
Query: 4 CKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMY-NCNISGGIPEEISNLTNSTIVNL 62
C++LT+++L +N L I G LE + N + P L ++L
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTG--LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112
Query: 63 GGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICH-LAELYRLDLDGNKLSGSLPA 121
L P +DN L+ ++PDD L L L L GN++S
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Query: 122 CFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLE 169
F L SL + L N++ V P F +L ++ L +N L++ LP E
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTE 219
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-T 145
DN++ P L +L RLDLD N+L+ LPA F LT L +SL N+L S+P
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 105
Query: 146 FWNLKDILNL 155
F NLK + ++
Sbjct: 106 FDNLKSLTHI 115
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 54 LTNSTIVNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGN 113
L N T +N N+L P L +N++ P + +L L L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 114 KLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNL 173
+++ P NLT+L + L SN ++ + L + LNFSSN +T PL NL
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKPL--ANL 172
Query: 174 KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 215
L +D S N S + + + L NLE L N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 53/255 (20%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 134
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N + S LS N++ P + +L L RLD+ NK+S S+
Sbjct: 135 ELSSNTI--SDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISV 190
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 191 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 249
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 250 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 308 TYLTLYFNNISDISP 322
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 354 LELFRATDEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMK 412
LE DE + ++GKG +G VY R L +++ +A+K + R + E + K
Sbjct: 15 LEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHK 74
Query: 413 NIRHRNLIKIL 423
+++H+N+++ L
Sbjct: 75 HLKHKNIVQYL 85
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 92 EGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
E +PD L L LDL +L P F++L+SL+++++ SN+L SVP
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSN----LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF 157
L L LDL N LS C S TSL+ + L N + ++ F L+ + +L+F
Sbjct: 346 LPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 158 SSNFLTSPLPLEIG-NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS-IP 215
+ L + +L+ LI +D S + GL +LE L + N Q + +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 216 DSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEGEIPRG 265
D F +L P + LS L+ LN++ N+L+ +P G
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDG 512
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSVPLT 145
I HL L L++ N + S LP FSNLT+L + L SNK+ S+ T
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNF 161
L L LD+ + F+ L+SL ++ + N +F NF
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------------------SFQENF 461
Query: 162 LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
L P L+ L +D S + PT L +L+ L + N+L+ S+PD D
Sbjct: 462 L----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD 515
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPA-CFSNLTSLRIVSLGSNKLTSVPL-T 145
DN++ P L +L RLDLD N+L+ LPA F LT L +SL N+L S+P
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGA 97
Query: 146 FWNLKDILNL 155
F NLK + ++
Sbjct: 98 FDNLKSLTHI 107
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 103 AELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVPLTFWN-LKDILNLNFSSN 160
A+ LDL+ N L SLP F LTSL + LG NKL S+P +N L + LN S+N
Sbjct: 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 161 FLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFG 219
L S LP + L L + + N + L L+ L L N+L+ S+PD
Sbjct: 87 QLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF 144
Query: 220 D 220
D
Sbjct: 145 D 145
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 8/122 (6%)
Query: 97 DDICHLAELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILN 154
D++ L +LY L GNKL SLP F+ LTSL ++L +N+L S+P F L +
Sbjct: 49 DELTSLTQLY---LGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104
Query: 155 LNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS 213
L ++N L S LP + L L + N V L +L+Y++L N +
Sbjct: 105 LALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163
Query: 214 IP 215
P
Sbjct: 164 CP 165
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 89 NKLEGSIPDDICH-LAELYRLDLDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVPL-T 145
NKL+ S+P+ + + L L L+L N+L SLP F LT L+ ++L +N+L S+P
Sbjct: 62 NKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGV 119
Query: 146 FWNLKDILNLNFSSNFLTS 164
F L + +L N L S
Sbjct: 120 FDKLTQLKDLRLYQNQLKS 138
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
L L RLDLD N+L F LT L+ +SL N+L SVP
Sbjct: 156 LTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 126 LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF---SSNFLTSPLP----LEIGNLKVLIG 178
L ++R ++LG NKL + LK++ NL + + N L S LP ++ NLK L+
Sbjct: 62 LPNVRYLALGGNKLHDISA----LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVL 116
Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAI 238
++ + + + L NL YL+L +N+LQ S+P D + ++
Sbjct: 117 VENQLQSLPDGV---FDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSL 172
Query: 239 PASL-EKLSYLENLNLSFNKLEGEIPRG 265
P + +KL+ L+ L+L+ N+L+ +P G
Sbjct: 173 PEGVFDKLTQLKQLSLNDNQLKS-VPDG 199
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 98 DICHLAELYRLD---LDGNKLSGSLP-ACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDI 152
DI L EL L L GN+L SLP F LT+L+ + L N+L S+P F L ++
Sbjct: 77 DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 153 LNLNFSSNFLTSPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQ 211
LN + N L S LP + L L +D S N + L L+ L L N+L+
Sbjct: 136 TYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 212 GSIPDSFGD 220
S+PD D
Sbjct: 195 -SVPDGVFD 202
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 40/147 (27%)
Query: 126 LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF---SSNFLTSPLP----LEIGNLKVLIG 178
L ++R ++LG NKL + LK++ NL + + N L S LP ++ NLK L+
Sbjct: 62 LPNVRYLALGGNKLHDISA----LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVL 116
Query: 179 IDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAI 238
++ + + + L NL YL L +N+LQ S+P D
Sbjct: 117 VENQLQSLPDGV---FDKLTNLTYLNLAHNQLQ-SLPKGVFD------------------ 154
Query: 239 PASLEKLSYLENLNLSFNKLEGEIPRG 265
KL+ L L+LS+N+L+ +P G
Sbjct: 155 -----KLTNLTELDLSYNQLQS-LPEG 175
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVKVF----NLQCGRAFESFDVECEMMKNIRH 416
E + +IG GGFG VY+A +GD EVAVK + + E+ E ++ ++H
Sbjct: 8 ELTLEEIIGIGGFGKVYRAFWIGD--EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKH 65
Query: 417 RNLIKILHGVAVITFTVCLCL 437
N+I L GV + +CL +
Sbjct: 66 PNIIA-LRGVCLKEPNLCLVM 85
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTS--VPLTFWNLKD--ILNLNFS 158
+ L +LDL N L P CF + L + L + +L W L + I NL+ +
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 159 SNFLTSPLPLEIGNLKV--LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPD 216
+N L + LK L +D S NN V L +L YL L YN +Q P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 217 SF 218
SF
Sbjct: 291 SF 292
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 355 ELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVKV 392
E F A E+ L+GKGGFG+V+ RL DR++VA+KV
Sbjct: 27 EAFEA--EYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKV 63
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHG 425
+G G FG VYKA+ + + A KV + + E + VE +++ + H N++K+L
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHG 425
+G G FG VYKA+ + + A KV + + E + VE +++ + H N++K+L
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHG 425
+G G FG VYKA+ + + A KV + + E + VE +++ + H N++K+L
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 102
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TF 146
DN++ P L +L RLDLD N+L+ F LT L +SL N+L S+P F
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 147 WNLKDILNL 155
NL+ + ++
Sbjct: 99 DNLRSLTHI 107
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 88 DNKLEGSIPDD--ICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP-L 144
DN+L G I D L L +L+L N+L+G P F + ++ + LG NK+ +
Sbjct: 38 DNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 145 TFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFS 187
F L + LN N ++ +P +L L ++ + N F+
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 45/117 (38%)
Query: 171 GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXX 230
G L L+ ++ N +G+ P G +++ L LG N+++ F L
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 231 XXXXXGAIPASLEKLSYLENLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN 287
+P S E L+ L +LNL+ N +S G CG+P+
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 359 ATDEFSENNLIGKGGFGSVYKA----RLGDRMEVAVKVFNLQCG-RAFESFDVECEMMKN 413
A ++ N ++G+G FG VY+ G+++ VAVK C E F E +MKN
Sbjct: 22 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 81
Query: 414 IRHRNLIKIL 423
+ H +++K++
Sbjct: 82 LDHPHIVKLI 91
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 359 ATDEFSENNLIGKGGFGSVYKA----RLGDRMEVAVKVFNLQCG-RAFESFDVECEMMKN 413
A ++ N ++G+G FG VY+ G+++ VAVK C E F E +MKN
Sbjct: 6 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 65
Query: 414 IRHRNLIKIL 423
+ H +++K++
Sbjct: 66 LDHPHIVKLI 75
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 359 ATDEFSENNLIGKGGFGSVYKA----RLGDRMEVAVKVFNLQCG-RAFESFDVECEMMKN 413
A ++ N ++G+G FG VY+ G+++ VAVK C E F E +MKN
Sbjct: 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKN 69
Query: 414 IRHRNLIKIL 423
+ H +++K++
Sbjct: 70 LDHPHIVKLI 79
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 367 NLIGKGGFGSVYKARL----GDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRHRNLI 420
++G+G FGSV + L G ++VAVK L R E F E MK+ H N+I
Sbjct: 40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 421 KILHGVAV 428
++L GV +
Sbjct: 100 RLL-GVCI 106
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
L L LDL N+L SLP L +L ++ + N+LTS+PL L ++ L N
Sbjct: 77 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 161 FLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
L + P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPL 166
LDL N+L SLP L +L ++ + N+LTS+PL L ++ L N L +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPL 166
LDL N+L SLP L +L ++ + N+LTS+PL L ++ L N L +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPL 166
LDL N+L SLP L +L ++ + N+LTS+PL L ++ L N L +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPL 166
LDL N+L SLP L +L ++ + N+LTS+PL L ++ L N L +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
P + L + + NN + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
+G G FG V+ A +VAVK + E+F E +MK ++H L+K LH V
Sbjct: 23 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVK-LHAV 78
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 74/182 (40%), Gaps = 23/182 (12%)
Query: 98 DICHLAELYRLDLDGNKLSGSLPACFSNLTSL-----RIVSLGSNKLTSVPLTFWNLKDI 152
DI + L +L+L N++ P CF + L V LG + + L N I
Sbjct: 171 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSI 229
Query: 153 LNLNFSSNFL-----TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 207
NL+ S++ L T+ L L+ NL +L D S NN + V L LEY FL Y
Sbjct: 230 RNLSLSNSQLSTTSNTTFLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEY 286
Query: 208 NRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP-ASLEK--------LSYLENLNLSFNKL 258
N +Q S L +I ASL K L LE+LN+ N +
Sbjct: 287 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 346
Query: 259 EG 260
G
Sbjct: 347 PG 348
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 74/182 (40%), Gaps = 23/182 (12%)
Query: 98 DICHLAELYRLDLDGNKLSGSLPACFSNLTSL-----RIVSLGSNKLTSVPLTFWNLKDI 152
DI + L +L+L N++ P CF + L V LG + + L N I
Sbjct: 176 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSI 234
Query: 153 LNLNFSSNFL-----TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 207
NL+ S++ L T+ L L+ NL +L D S NN + V L LEY FL Y
Sbjct: 235 RNLSLSNSQLSTTSNTTFLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEY 291
Query: 208 NRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP-ASLEK--------LSYLENLNLSFNKL 258
N +Q S L +I ASL K L LE+LN+ N +
Sbjct: 292 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 351
Query: 259 EG 260
G
Sbjct: 352 PG 353
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 369 IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+G+G FG V+ A D++ VAVK A + F E E++ N++H +++K
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVK- 79
Query: 423 LHGVAV 428
+GV V
Sbjct: 80 FYGVCV 85
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
+G G FG V+ A +VAVK + E+F E +MK ++H L+K LH V
Sbjct: 190 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVK-LHAV 245
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 74/182 (40%), Gaps = 23/182 (12%)
Query: 98 DICHLAELYRLDLDGNKLSGSLPACFSNLTSL-----RIVSLGSNKLTSVPLTFWNLKDI 152
DI + L +L+L N++ P CF + L V LG + + L N I
Sbjct: 166 DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN-TSI 224
Query: 153 LNLNFSSNFL-----TSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 207
NL+ S++ L T+ L L+ NL +L D S NN + V L LEY FL Y
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTML---DLSYNNLNVVGNDSFAWLPQLEYFFLEY 281
Query: 208 NRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIP-ASLEK--------LSYLENLNLSFNKL 258
N +Q S L +I ASL K L LE+LN+ N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 259 EG 260
G
Sbjct: 342 PG 343
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)
Query: 87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTF 146
++NK+ D +L L+ L L NK+S P F+ L L + L N+L +P
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF--SGVIPTEIGGLKNLEYLF 204
K + L N +T L +I ++ N SG+ G+K L Y+
Sbjct: 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 205 LGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEG 260
+ + +IP + A ASL+ L+ L L LSFN +
Sbjct: 178 IADTNIT-TIPQGLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISA 230
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 94 SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDI 152
+P D+ L LDL NK++ F NL +L + L +NK++ + P F L +
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
L S N L LP ++ K L + N + V + GL + + LG N L+
Sbjct: 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 213 S 213
S
Sbjct: 160 S 160
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGV 426
+G G FG V+ A +VAVK + E+F E +MK ++H L+K LH V
Sbjct: 196 LGAGQFGEVWMATYNKHTKVAVKTMK-PGSMSVEAFLAEANVMKTLQHDKLVK-LHAV 251
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 94 SIPDDICH-LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKD 151
+I D H L L L L GN + P FS LTSL + KL S+ L
Sbjct: 65 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 124
Query: 152 ILNLNFSSNFLTS-PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLK 198
+ LN + NF+ S LP NL L+ +D S N + ++ L+
Sbjct: 125 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 172
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 94 SIPDDICH-LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKD 151
+I D H L L L L GN + P FS LTSL + KL S+ L
Sbjct: 70 TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129
Query: 152 ILNLNFSSNFLTS-PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLK 198
+ LN + NF+ S LP NL L+ +D S N + ++ L+
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 68/178 (38%), Gaps = 28/178 (15%)
Query: 107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLT-----------SVPLTFWNLKDILNL 155
RL+L+ NKL F LT L +SL SN L+ + L + +L +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 156 NFSSNFL----TSPLPLEIGNLKV------------LIGIDFSMNNFSGVIPTEIGGLKN 199
SSNFL L + NLK LI +D S + GL +
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 200 LEYLFLGYNRLQGS-IPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFN 256
LE L + N Q + +PD F +L P + LS L+ LN+S N
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 92 EGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLK 150
E +PD L L LDL +L P F++L+SL+++++ N S+ + L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 151 DILNLNFSSNFLTSPLPLEIGNL-KVLIGIDFSMNNFSGVIPTE--IGGLKNLEYLFLGY 207
+ L++S N + + E+ + L ++ + N+F+ + + +K+ L +
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283
Query: 208 NRLQGSIP 215
R++ + P
Sbjct: 284 ERMECATP 291
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 27 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 82
Query: 422 ILH 424
+ +
Sbjct: 83 LRY 85
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 50 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 105
Query: 422 ILH 424
+ +
Sbjct: 106 LRY 108
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)
Query: 87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTF 146
++NK+ D +L L+ L L NK+S P F+ L L + L N+L +P
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 147 WNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF--SGVIPTEIGGLKNLEYLF 204
K + L N +T L +I ++ N SG+ G+K L Y+
Sbjct: 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 205 LGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFNKLEG 260
+ + +IP + A ASL+ L+ L L LSFN +
Sbjct: 178 IADTNIT-TIPQGLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISA 230
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 94 SIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDI 152
+P D+ L LDL NK++ F NL +L + L +NK++ + P F L +
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 153 LNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQG 212
L S N L LP ++ K L + N + V + GL + + LG N L+
Sbjct: 103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 213 S 213
S
Sbjct: 160 S 160
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 60 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 115
Query: 422 ILH 424
+ +
Sbjct: 116 LRY 118
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 58 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 113
Query: 422 ILH 424
+ +
Sbjct: 114 LRY 116
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 111
Query: 422 ILH 424
+ +
Sbjct: 112 LRY 114
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 111
Query: 422 ILH 424
+ +
Sbjct: 112 LRY 114
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 101 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 156
Query: 422 ILH 424
+ +
Sbjct: 157 LRY 159
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 33 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 92
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 93 IEILKSLQHDNIVK 106
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 1 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 60
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 61 IEILKSLQHDNIVK 74
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 6 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 65
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 66 IEILKSLQHDNIVK 79
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 30 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 86
Query: 423 LH 424
+
Sbjct: 87 RY 88
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 89
Query: 422 ILH 424
+ +
Sbjct: 90 LRY 92
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 90
Query: 423 LH 424
+
Sbjct: 91 RY 92
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 357 FRATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDV 406
R +F E +L +GKG FGSV R + VAVK F+
Sbjct: 1 MRDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 60
Query: 407 ECEMMKNIRHRNLIK 421
E E++K+++H N++K
Sbjct: 61 EIEILKSLQHDNIVK 75
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 23 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 79
Query: 423 LH 424
+
Sbjct: 80 RY 81
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 35 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 91
Query: 423 LH 424
+
Sbjct: 92 RY 93
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 5/63 (7%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+++ +IG G FG VY+A+L D E VA+K LQ R F+ + E ++M+ + H N+++
Sbjct: 41 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKV-LQDKR-FK--NRELQIMRKLDHCNIVR 96
Query: 422 ILH 424
+ +
Sbjct: 97 LRY 99
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 26 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 82
Query: 423 LH 424
+
Sbjct: 83 RY 84
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 5 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 64
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 65 IEILKSLQHDNIVK 78
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 5 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 64
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 65 IEILKSLQHDNIVK 78
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
+++ +IG G FG VY+A+L D E+ LQ R F+ + E ++M+ + H N++++
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-FK--NRELQIMRKLDHCNIVRL 78
Query: 423 LH 424
+
Sbjct: 79 RY 80
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 3 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 62
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 63 IEILKSLQHDNIVK 76
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 7 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 66
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 67 IEILKSLQHDNIVK 80
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 5 RDPTQFEERHLKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 64
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 65 IEILKSLQHDNIVK 78
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 8 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 67
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 68 IEILKSLQHDNIVK 81
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 358 RATDEFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVE 407
R +F E +L +GKG FGSV R + VAVK F+ E
Sbjct: 9 RDPTQFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 68
Query: 408 CEMMKNIRHRNLIK 421
E++K+++H N++K
Sbjct: 69 IEILKSLQHDNIVK 82
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 369 IGKGGFGSVYKAR------LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+G+G FG V+ A D+M VAVK A + F E E++ N++H +++K
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVK 81
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 59 IVNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGS 118
++NL N L GS+ L +N++ SIP D+ HL L L++ N+L
Sbjct: 432 VLNLSSNMLTGSVFRCLPPKVKVLDL--HNNRI-MSIPKDVTHLQALQELNVASNQLKSV 488
Query: 119 LPACFSNLTSLRIVSLGSN 137
F LTSL+ + L N
Sbjct: 489 PDGVFDRLTSLQYIWLHDN 507
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 89 NKLEGSIPDDICHLAE-LYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFW 147
N L D C AE + L+L N L+GS+ C ++++ L +N++ S+P
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT 470
Query: 148 NLKDILNLNFSSNFLTS 164
+L+ + LN +SN L S
Sbjct: 471 HLQALQELNVASNQLKS 487
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 367 NLIGK-GGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILH 424
+IG+ G FG VYKA+ + + A KV + + E + VE +++ + H N++K+L
Sbjct: 15 EIIGELGDFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLD 74
Query: 425 G 425
Sbjct: 75 A 75
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSPL 166
LDL N+L SLP L +L ++ + N+LTS+PL L ++ L N L +
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 167 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSF 218
P + L + + N+ + + + GL+NL+ L L N L +IP F
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNF 161
A R+ L GN++S A F + +L I+ L SN L + F L + L+ S N
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 162 -LTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIPDSFGD 220
L P L L + + P GL L+YL+L N LQ ++F D
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 221 L 221
L
Sbjct: 151 L 151
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 7/172 (4%)
Query: 2 SNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMY-NCNISGGIPEEISNLTNSTIV 60
+C++LT+++L +N L GI G LE + N + P L + +
Sbjct: 52 QSCRNLTILWLHSNALAGIDAAAFTGLTL--LEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICH-LAELYRLDLDGNKLSGSL 119
+L L P +DN L+ ++PD+ L L L L GN++
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLGNLTHLFLHGNRIPSVP 168
Query: 120 PACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDILNLNFSSNFLTSPLPLEI 170
F L SL + L N + V P F +L ++ L +N L S LP E+
Sbjct: 169 EHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEV 219
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGDRMEV-AVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR R + A+KV F Q +A E E+ ++
Sbjct: 3 ALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 62
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 63 RHPNILRL 70
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 362 EFSENNL-----IGKGGFGSVYKARLGDRME------VAVKVFNLQCGRAFES-FDVECE 409
E+ NN+ IG+G FG V++AR + VAVK+ + ++ F E
Sbjct: 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 102
Query: 410 MMKNIRHRNLIKILHGVAVITFTVCLCLFHH 440
+M + N++K+L GV + +CL LF +
Sbjct: 103 LMAEFDNPNIVKLL-GVCAVGKPMCL-LFEY 131
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN 413
++L AT+ F LIG G FG VYK L D +VA+K + + E F+ E E +
Sbjct: 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSF 91
Query: 414 IRHRNLIKIL 423
RH +L+ ++
Sbjct: 92 CRHPHLVSLI 101
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 28/198 (14%)
Query: 87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-T 145
++N ++ D HL L L L N + F+ L SL + L N+LT+VP
Sbjct: 43 QENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA 102
Query: 146 FWNLKDILNL-----------NFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE- 193
F L + L +++ N + S L++G LK L I S F G++
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRY 160
Query: 194 -------------IGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPA 240
+ L LE L L NRL P SF L
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 241 SLEKLSYLENLNLSFNKL 258
+ + L LE LNLS N L
Sbjct: 221 AFDDLKSLEELNLSHNNL 238
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKN 413
++L AT+ F LIG G FG VYK L D +VA+K + + E F+ E E +
Sbjct: 32 VDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSF 91
Query: 414 IRHRNLIKIL 423
RH +L+ ++
Sbjct: 92 CRHPHLVSLI 101
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 369 IGKGGFGSVYKARLGDRMEV-AVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G FG VYKA+ + + A KV + E + VE E++ H ++K+L
Sbjct: 19 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 74
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 368 LIGKGGFGSVYKARLGDRM---EVAVKVFNLQCGRAFESFDV--ECEMMKNIRHRNLIKI 422
++GKG FG V K + DR+ E AVKV N + ++ + E E++K + H N++K+
Sbjct: 29 MLGKGSFGEVLKCK--DRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKL 86
Query: 423 LH 424
Sbjct: 87 FE 88
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 362 EFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVECEMM 411
+F E +L +GKG FGSV R + VAVK F+ E E++
Sbjct: 4 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 63
Query: 412 KNIRHRNLIK 421
K+++H N++K
Sbjct: 64 KSLQHDNIVK 73
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 362 EFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVECEMM 411
+F E +L +GKG FGSV R + VAVK F+ E E++
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 412 KNIRHRNLIK 421
K+++H N++K
Sbjct: 66 KSLQHDNIVK 75
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 74/198 (37%), Gaps = 28/198 (14%)
Query: 87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-T 145
++N ++ D HL L L L N + F+ L SL + L N+LT+VP
Sbjct: 43 QENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQA 102
Query: 146 FWNLKDILNL-----------NFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE- 193
F L + L +++ N + S L++G LK L I S F G++
Sbjct: 103 FEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVNLRY 160
Query: 194 -------------IGGLKNLEYLFLGYNRLQGSIPDSFGDLIXXXXXXXXXXXXXGAIPA 240
+ L LE L L NRL P SF L
Sbjct: 161 LNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERN 220
Query: 241 SLEKLSYLENLNLSFNKL 258
+ + L LE LNLS N L
Sbjct: 221 AFDDLKSLEELNLSHNNL 238
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 362 EFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVECEMM 411
+F E +L +GKG FGSV R + VAVK F+ E E++
Sbjct: 24 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 83
Query: 412 KNIRHRNLIK 421
K+++H N++K
Sbjct: 84 KSLQHDNIVK 93
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 362 EFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVECEMM 411
+F E +L +GKG FGSV R + VAVK F+ E E++
Sbjct: 6 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 65
Query: 412 KNIRHRNLIK 421
K+++H N++K
Sbjct: 66 KSLQHDNIVK 75
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 369 IGKGGFGSVYKARLGDRMEV-AVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G FG VYKA+ + + A KV + E + VE E++ H ++K+L
Sbjct: 27 LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 82
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 362 EFSENNL-----IGKGGFGSVYKARLGDRME-----VAVKVFNLQCGRAFESFDVECEMM 411
+F E +L +GKG FGSV R + VAVK F+ E E++
Sbjct: 24 QFEERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEIL 83
Query: 412 KNIRHRNLIK 421
K+++H N++K
Sbjct: 84 KSLQHDNIVK 93
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 16 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 18 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 69
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 21 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 16 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNL--QCGRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ + F++F E +++ RH N++
Sbjct: 44 IGSGSFGTVYKGKWHGD---VAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNIL 95
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 16 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 21 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 72
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILH- 424
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++ +
Sbjct: 20 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 76
Query: 425 ----GVAVIT-FTVCLCLFHH 440
+A++T + L+HH
Sbjct: 77 STKPQLAIVTQWCEGSSLYHH 97
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILH- 424
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++ +
Sbjct: 32 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 425 ----GVAVIT-FTVCLCLFHH 440
+A++T + L+HH
Sbjct: 89 STKPQLAIVTQWCEGSSLYHH 109
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILH- 424
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++ +
Sbjct: 44 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 100
Query: 425 ----GVAVIT-FTVCLCLFHH 440
+A++T + L+HH
Sbjct: 101 STKPQLAIVTQWCEGSSLYHH 121
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 43 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 94
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 36 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 87
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLIKILH- 424
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++ +
Sbjct: 32 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGY 88
Query: 425 ----GVAVIT-FTVCLCLFHH 440
+A++T + L+HH
Sbjct: 89 STAPQLAIVTQWCEGSSLYHH 109
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 369 IGKGGFGSVYKARL-GDRMEVAVKVFNLQC--GRAFESFDVECEMMKNIRHRNLI 420
IG G FG+VYK + GD VAVK+ N+ + ++F E +++ RH N++
Sbjct: 44 IGSGSFGTVYKGKWHGD---VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 95
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 368 LIGKGGFGSVYKARLGDRM---EVAVKVFNLQCGRAFESFDV--ECEMMKNIRHRNLIKI 422
++GKG FG V K + DR+ E AVKV N + ++ + E E++K + H N++K+
Sbjct: 29 MLGKGSFGEVLKCK--DRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKL 86
Query: 423 L 423
Sbjct: 87 F 87
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 368 LIGKGGFGSVYKARLGDRM---EVAVKVFNLQCGRAFESFDV--ECEMMKNIRHRNLIKI 422
++GKG FG V K + DR+ E AVKV N + ++ + E E++K + H N++K+
Sbjct: 29 MLGKGSFGEVLKCK--DRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKL 86
Query: 423 L 423
Sbjct: 87 F 87
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 44 SGGIPEEISNLTNSTIVNLGGNKLNGSIPITL-SXXXXXXXXXXEDNKLEGSIPDDICHL 102
S G P + S + T+VN +L S+P + + + KLE + D HL
Sbjct: 3 SAGCPSQCS--CDQTLVNCQNIRL-ASVPAGIPTDKQRLWLNNNQITKLEPGVFD---HL 56
Query: 103 AELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSN 160
L +L + NKL+ F LT L + L N L S+P F NLK + ++ +N
Sbjct: 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 362 EFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
E ++G+G FG V KA+ + +VA+K + R ++F VE + + H N++K
Sbjct: 10 EIEVEEVVGRGAFGVVCKAKWRAK-DVAIKQIESESER--KAFIVELRQLSRVNHPNIVK 66
Query: 422 I 422
+
Sbjct: 67 L 67
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 8/161 (4%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSN----LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNF 157
L L LDL N LS C S TSL+ + L N + ++ F L+ + +L+F
Sbjct: 346 LPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403
Query: 158 SSNFLTSPLPLEIG-NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGS-IP 215
+ L + +L+ LI +D S + GL +LE L + N Q + +P
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 216 DSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLENLNLSFN 256
D F +L P + LS L+ LN+S N
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 92 EGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLK 150
E +PD L L LDL +L P F++L+SL+++++ N S+ + L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
Query: 151 DILNLNFSSNFLTSPLPLEIGNL-KVLIGIDFSMNNFSGVIPTE--IGGLKNLEYLFLGY 207
+ L++S N + + E+ + L ++ + N+F+ + + +K+ L +
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 578
Query: 208 NRLQGSIP 215
R++ + P
Sbjct: 579 ERMECATP 586
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSVPLT 145
I HL L L++ N + S LP FSNLT+L + L SNK+ S+ T
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-F 393
P N+ L + + + A ++F +GKG FG+VY AR + +A+KV F
Sbjct: 9 PENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLF 68
Query: 394 NLQCGRA--FESFDVECEMMKNIRHRNLIKI 422
Q +A E E+ ++RH N++++
Sbjct: 69 KAQLEKAGVEHQLRREVEIQSHLRHPNILRL 99
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 362 EFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
E ++G+G FG V KA+ + +VA+K + R ++F VE + + H N++K
Sbjct: 9 EIEVEEVVGRGAFGVVCKAKWRAK-DVAIKQIESESER--KAFIVELRQLSRVNHPNIVK 65
Query: 422 I 422
+
Sbjct: 66 L 66
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 363 FSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKI 422
++ +IG G FG V++A+L + EVA+K LQ R F+ + E ++M+ ++H N++ +
Sbjct: 42 YTNCKVIGNGSFGVVFQAKLVESDEVAIKKV-LQDKR-FK--NRELQIMRIVKHPNVVDL 97
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFW 147
+ +L + + + HL LY L+ N L+ P FS+LT+LR +SL SN+LT L+
Sbjct: 468 ETELCWDVFEGLSHLQVLY---LNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHN 522
Query: 148 NLKDILN-LNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNF 186
+L L L+ S N L +P P +L VL D + N F
Sbjct: 523 DLPANLEILDISRNQLLAPNPDVFVSLSVL---DITHNKF 559
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 49/128 (38%), Gaps = 30/128 (23%)
Query: 122 CFSNLTSLRIVSLGSNK------------------------LTSVPLT---FWNLKDILN 154
F NL +LRI+ LGS+K L+ L F NLK +
Sbjct: 68 AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127
Query: 155 LNFSSNFLTS-PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGL--KNLEYLFLGYNRLQ 211
L+ S N + S L G L L IDFS N V E+ L K L + L N L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187
Query: 212 GSIPDSFG 219
+ +G
Sbjct: 188 SRVSVDWG 195
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGR--AFESFDVECEMMKNIRHRNLI 420
LIGKG FG VY R EVA+++ +++ ++F E + RH N++
Sbjct: 39 ELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVV 92
>pdb|3F3Z|A Chain A, Crystal Structure Of Cryptosporidium Parvum Calcium
Dependent Protein Kinase Cgd7_1840 In Presence Of
Indirubin E804
Length = 277
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 363 FSENNLIGKGGFGSVYKA-RLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
++ N IG+G +G V A + G R+ A K + F E E+MK++ H N+I+
Sbjct: 11 YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIR 70
Query: 422 I 422
+
Sbjct: 71 L 71
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 369 IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+G+G FG V+ A D+M VAVK A + F E E++ ++H+++++
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 107
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-F 393
P N+ L + + + A ++F +GKG FG+VY AR + +A+KV F
Sbjct: 9 PENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLF 68
Query: 394 NLQCGRA--FESFDVECEMMKNIRHRNLIKI 422
Q +A E E+ ++RH N++++
Sbjct: 69 KAQLEKAGVEHQLRREVEIQSHLRHPNILRL 99
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 369 IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+G+G FG V+ A D+M VAVK A + F E E++ ++H+++++
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 84
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 88 DNKLEGSIPDDICHLAELYRLDLDGNKLS--GSLPACFSNLTSLRIVSLGSNKLTSVPLT 145
+N L ++ ++ HL EL L L N+L + + + SL+ + + N ++
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 146 ---FWNLKDILNLNFSSNFLTSP----LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLK 198
W K +L+LN SSN LT LP I KVL D N IP ++ L+
Sbjct: 393 GDCSWT-KSLLSLNMSSNILTDTIFRCLPPRI---KVL---DLHSNKIKS-IPKQVVKLE 444
Query: 199 NLEYLFLGYNRLQGSIPDSFGD 220
L+ L + N+L+ S+PD D
Sbjct: 445 ALQELNVASNQLK-SVPDGIFD 465
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 29 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 84
Query: 429 IT 430
+T
Sbjct: 85 VT 86
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 31 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 86
Query: 429 IT 430
+T
Sbjct: 87 VT 88
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 30 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 85
Query: 429 IT 430
+T
Sbjct: 86 VT 87
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 82
Query: 429 IT 430
+T
Sbjct: 83 VT 84
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 362 EFSENNLIGKGGFGSVYKARL----GDRMEVAVKVF--NLQCGRAFESFDVECEMMKNIR 415
+F+ ++GKG FGSV +A+L G ++VAVK+ ++ E F E MK
Sbjct: 24 QFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFD 83
Query: 416 HRNLIKIL 423
H ++ K++
Sbjct: 84 HPHVAKLV 91
>pdb|2QG5|A Chain A, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|B Chain B, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
pdb|2QG5|D Chain D, Cryptosporidium Parvum Calcium Dependent Protein Kinase
Cgd7_1840
Length = 294
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 363 FSENNLIGKGGFGSVYKA-RLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
++ N IG+G +G V A + G R+ A K + F E E+MK++ H N+I+
Sbjct: 28 YTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIR 87
Query: 422 I 422
+
Sbjct: 88 L 88
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 369 IGKGGFGSVYKARL------GDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIK 421
+G+G FG V+ A D+M VAVK A + F E E++ ++H+++++
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVR 78
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 76
Query: 429 IT 430
+T
Sbjct: 77 VT 78
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 76
Query: 429 IT 430
+T
Sbjct: 77 VT 78
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 21 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 76
Query: 429 IT 430
+T
Sbjct: 77 VT 78
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 23 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 78
Query: 429 IT 430
+T
Sbjct: 79 VT 80
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 26 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 81
Query: 429 IT 430
+T
Sbjct: 82 VT 83
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 363 FSENNLIGKGGFGSVYKAR-LGDRMEVA---VKVFNLQCGRAFESFDVECEMMKNIRHRN 418
F IG+G F VY+A L D + VA V++F+L +A E +++K + H N
Sbjct: 34 FRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN 93
Query: 419 LIK 421
+IK
Sbjct: 94 VIK 96
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 27 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 82
Query: 429 IT 430
+T
Sbjct: 83 VT 84
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
IGKG FG V LGD V V ++ ++F E +M +RH NL+++L GV V
Sbjct: 20 IGKGEFGDVM---LGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL-GVIV 75
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 22 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 77
Query: 429 IT 430
+T
Sbjct: 78 VT 79
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 17 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 72
Query: 429 IT 430
+T
Sbjct: 73 VT 74
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
IGKG FG V LGD V V ++ ++F E +M +RH NL+++L GV V
Sbjct: 201 IGKGEFGDVM---LGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL-GVIV 256
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%)
Query: 47 IPEEISNLTNSTIVNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELY 106
+P+E+SN + T+++L N+++ + S N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKL 139
L L GN +S F++L++L +++G+N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 134 LGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTE 193
L N+ T VP N K + ++ S+N +++ N+ L+ + S N + P
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRT 97
Query: 194 IGGLKNLEYLFLGYNRLQGSIPDSFGDL 221
GLK+L L L N + +F DL
Sbjct: 98 FDGLKSLRLLSLHGNDISVVPEGAFNDL 125
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 46 GIPEEISNLTNSTIVNLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAEL 105
GIP +++ L L GN+ +P LS +N++ ++ +L
Sbjct: 28 GIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 106 YRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVP 143
L L N+L P F L SLR++SL N ++ VP
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 95 IPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLKDIL 153
+P ++ + L +DL N++S FSN+T L + L N+L + P TF LK +
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 154 NLNFSSN 160
L+ N
Sbjct: 106 LLSLHGN 112
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
IGKG FG V LGD V V ++ ++F E +M +RH NL+++L GV V
Sbjct: 14 IGKGEFGDVM---LGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL-GVIV 69
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G FG V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 16 LGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 71
Query: 429 IT 430
+T
Sbjct: 72 VT 73
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
IGKG FG V LGD V V ++ ++F E +M +RH NL+++L GV V
Sbjct: 29 IGKGEFGDVM---LGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL-GVIV 84
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 367 NLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAF 401
LIG+G +G+VYK L +R VAVKVF+ + F
Sbjct: 19 ELIGRGRYGAVYKGSLDER-PVAVKVFSFANRQNF 52
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK IRH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVVS 83
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 5 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 64
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 65 RHPNILRL 72
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 10 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 69
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 70 RHPNILRL 77
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 67 RHPNILRL 74
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
pdb|3GC9|B Chain B, The Structure Of P38beta C119s, C162s In Complex With A
Dihydroquinazolinone Inhibitor
Length = 370
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 369 IGKGGFGSV---YKARLGDRMEVAVKVFNLQCGRAFESF------DVECEMMKNIRHRNL 419
+G G +GSV Y ARL R +VAVK + R F+S E ++K+++H N+
Sbjct: 36 VGSGAYGSVCSAYDARL--RQKVAVK----KLSRPFQSLIHARRTYRELRLLKHLKHENV 89
Query: 420 IKIL 423
I +L
Sbjct: 90 IGLL 93
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLI 420
IGKG FG V++ + EVAVK+F+ R S+ E E+ + + RH N++
Sbjct: 50 IGKGRFGEVWRGKWRGE-EVAVKIFS---SREERSWFREAEIYQTVMLRHENIL 99
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 352 SYLELFRATDEFSENNLIGKGGFGSVYKARL---GD--RMEVAVKVFNLQCG-RAFESFD 405
+ L + + T E ++G G FG+VYK G+ ++ VA+K+ N G +A F
Sbjct: 30 AQLRILKET-ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFM 88
Query: 406 VECEMMKNIRHRNLIKIL 423
E +M ++ H +L+++L
Sbjct: 89 DEALIMASMDHPHLVRLL 106
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLI 420
IGKG FG V++ + EVAVK+F+ R S+ E E+ + + RH N++
Sbjct: 37 IGKGRFGEVWRGKWRGE-EVAVKIFS---SREERSWFREAEIYQTVMLRHENIL 86
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 41/157 (26%)
Query: 93 GSIPDDICH-LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKD 151
S+P I H +L L + N L F TSL+ + L SN+LT V L+ +
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPS 193
Query: 152 ILNLNFSSNFLTS----------------------PLPLEIGNLKV-------------- 175
+ + N S N L++ P+ +E+ LK+
Sbjct: 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 253
Query: 176 --LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
L+ +D S N ++ ++ LE L++ NRL
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 6 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 65
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 66 RHPNILRL 73
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 68 RHPNILRL 75
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 71 RHPNILRL 78
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 67 RHPNILRL 74
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 66
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 67 RHPNILRL 74
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 71 RHPNILRL 78
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLI 420
IGKG FG V++ + EVAVK+F+ R S+ E E+ + + RH N++
Sbjct: 12 IGKGRFGEVWRGKWRGE-EVAVKIFS---SREERSWFREAEIYQTVMLRHENIL 61
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 71 RHPNILRL 78
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTF 146
E N ++ P +L R+DL N++S P F L SL + L NK+T +P +
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 147 W 147
+
Sbjct: 100 F 100
>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
pdb|3GC8|B Chain B, The Structure Of P38beta C162s In Complex With A
Dihydroquinazolinone
Length = 370
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 369 IGKGGFGSV---YKARLGDRMEVAVKVFNLQCGRAFESF------DVECEMMKNIRHRNL 419
+G G +GSV Y ARL R +VAVK + R F+S E ++K+++H N+
Sbjct: 36 VGSGAYGSVCSAYDARL--RQKVAVK----KLSRPFQSLIHARRTYRELRLLKHLKHENV 89
Query: 420 IKIL 423
I +L
Sbjct: 90 IGLL 93
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 8 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 67
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 68 RHPNILRL 75
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 9 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 68
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 69 RHPNILRL 76
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLI 420
IGKG FG V++ + EVAVK+F+ R S+ E E+ + + RH N++
Sbjct: 11 IGKGRFGEVWRGKWRGE-EVAVKIFS---SREERSWFREAEIYQTVMLRHENIL 60
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLI 420
IGKG FG V++ + EVAVK+F+ R S+ E E+ + + RH N++
Sbjct: 17 IGKGRFGEVWRGKWRGE-EVAVKIFS---SREERSWFREAEIYQTVMLRHENIL 66
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 71 RHPNILRL 78
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI--RHRNLI 420
IGKG FG V++ + EVAVK+F+ R S+ E E+ + + RH N++
Sbjct: 14 IGKGRFGEVWRGKWRGE-EVAVKIFS---SREERSWFREAEIYQTVMLRHENIL 63
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 11 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 70
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 71 RHPNILRL 78
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 92 EGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSV-PLTFWNLK 150
E +PD L L LDL +L P F++L+SL+++++ N S+ + L
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542
Query: 151 DILNLNFSSNFLTSPLPLEIGNL-KVLIGIDFSMNNFSGVIPTE--IGGLKNLEYLFLGY 207
+ L++S N + + E+ + L ++ + N+F+ + + +K+ L +
Sbjct: 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 602
Query: 208 NRLQGSIP 215
R++ + P
Sbjct: 603 ERMECATP 610
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSVPLT 145
I HL L L++ N + S LP FSNLT+L + L SNK+ S+ T
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 333 GKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
G P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 1 GAAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 11 (p38 Beta) In Complex With Nilotinib
Length = 348
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 15/64 (23%)
Query: 369 IGKGGFGSV---YKARLGDRMEVAVKVFNLQCGRAFESF------DVECEMMKNIRHRNL 419
+G G +GSV Y ARL R +VAVK + R F+S E ++K+++H N+
Sbjct: 28 VGSGAYGSVCSAYDARL--RQKVAVK----KLSRPFQSLIHARRTYRELRLLKHLKHENV 81
Query: 420 IKIL 423
I +L
Sbjct: 82 IGLL 85
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 359 ATDEFSENNLIGKGGFGSVYKARLGD-RMEVAVKV-FNLQCGRA--FESFDVECEMMKNI 414
A ++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++
Sbjct: 23 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL 82
Query: 415 RHRNLIKI 422
RH N++++
Sbjct: 83 RHPNILRL 90
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 333 GKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
G P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 1 GAAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKT--LKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 333 GKRPSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
G P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 1 GAAPCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 87 EDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTF 146
E N ++ P +L R+DL N++S P F L SL + L NK+T +P +
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSL 99
Query: 147 W 147
+
Sbjct: 100 F 100
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKT--LKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 80
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 193 LGQGCFGEVWMGTWNGTTRVAIKT--LKPGNMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 250
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 192 LGQGCFGEVWMGTWNGTTRVAIKT--LKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 249
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKI 422
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++
Sbjct: 275 LGQGCFGEVWMGTWNGTTRVAIKT--LKPGTMSPEAFLQEAQVMKKLRHEKLVQL 327
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 23 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 80
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 19 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 76
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 16 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 73
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 15 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 72
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 352 SYLELFRATDEFSENNLIGKGGFGSVYKARL---GD--RMEVAVKVFNLQCG-RAFESFD 405
+ L + + T E ++G G FG+VYK G+ ++ VA+K+ N G +A F
Sbjct: 7 AQLRILKET-ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFM 65
Query: 406 VECEMMKNIRHRNLIKIL 423
E +M ++ H +L+++L
Sbjct: 66 DEALIMASMDHPHLVRLL 83
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 17 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 74
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 108 LDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSNFLTSPLP 167
++L N++S FS + L ++L N LT +P +LKD N NF + +L + +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKN--SLKD-ENENFKNTYLLTSID 494
Query: 168 LEIGNLK------------VLIGIDFSMNNFSGVIPTE 193
L L L+GID S N+FS PT+
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 41/157 (26%)
Query: 93 GSIPDDICH-LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWNLKD 151
S+P I H +L L + N L F TSL+ + L SN+LT V L+ +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPS 187
Query: 152 ILNLNFSSNFLTS----------------------PLPLEIGNLKV-------------- 175
+ + N S N L++ P+ +E+ LK+
Sbjct: 188 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247
Query: 176 --LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 210
L+ +D S N ++ ++ LE L++ NRL
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 355 ELFRATDE---FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNL---QCGRAFESFDVE 407
ELF D FS+ IG G FG+VY AR E VA+K + Q ++ E
Sbjct: 45 ELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKE 104
Query: 408 CEMMKNIRHRNLIK 421
++ +RH N I+
Sbjct: 105 VRFLQKLRHPNTIQ 118
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 356 LFRATDEFSEN----NLIGKGGFGSVYK-ARLGDRMEVAVKVFNLQ--CGRAFESFDVEC 408
+ A+ +FS+N +GKG F V + +E A K+ N + R F+ + E
Sbjct: 20 MMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA 79
Query: 409 EMMKNIRHRNLIKILHGVAVITF 431
+ + ++H N++++ + +F
Sbjct: 80 RICRKLQHPNIVRLHDSIQEESF 102
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKV-FNLQCGRA--FESFDVECEMMKNIRH 416
++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++RH
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 417 RNLIKI 422
N++++
Sbjct: 72 PNILRL 77
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC 397
++FS + +IG+GGFG VY R D K++ ++C
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKC 221
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC 397
++FS + +IG+GGFG VY R D K++ ++C
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKC 221
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKI 422
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQL 78
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC 397
++FS + +IG+GGFG VY R D K++ ++C
Sbjct: 189 NDFSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKC 221
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKV-FNLQCGRA--FESFDVECEMMKNIRH 416
++F +GKG FG+VY AR + +A+KV F Q +A E E+ ++RH
Sbjct: 12 EDFDIGRPLGKGKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRH 71
Query: 417 RNLIKI 422
N++++
Sbjct: 72 PNILRL 77
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC 397
++FS + +IG+GGFG VY R D K++ ++C
Sbjct: 188 NDFSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKC 220
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 355 ELFRATDE---FSENNLIGKGGFGSVYKARLGDRME-VAVKVFNL---QCGRAFESFDVE 407
ELF D FS+ IG G FG+VY AR E VA+K + Q ++ E
Sbjct: 6 ELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKE 65
Query: 408 CEMMKNIRHRNLIK 421
++ +RH N I+
Sbjct: 66 VRFLQKLRHPNTIQ 79
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G+G FG V+ VA+K L+ G + E+F E ++MK +RH L+++ V+
Sbjct: 26 LGQGCFGEVWMGTWNGTTRVAIK--TLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVS 83
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G FG VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 19 LGGGQFGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 73
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 80 -LYGVVL 85
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 76 -LYGVVL 81
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 76 -LYGVVL 81
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 282
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 94 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 152
Query: 420 IKIL 423
+ +L
Sbjct: 153 LSLL 156
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 54 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 112
Query: 420 IKIL 423
+ +L
Sbjct: 113 LSLL 116
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 86 -LYGVVL 91
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 360 TDEFSENNLIGKGGFGSVYK-ARLGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRH 416
+D + +GKG F V + +E A K+ N + R F+ + E + + ++H
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64
Query: 417 RNLIKILHGVAVITF 431
N++++ + +F
Sbjct: 65 PNIVRLHDSIQEESF 79
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 20 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 79
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 80 -LYGVVL 85
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 16 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 75
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 76 -LYGVVL 81
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 369 IGKGGFGSV----YKARLGDRMEVAVKVFN---LQCGRAFESFDVECEMMKNIRHRNLIK 421
+G G FG V + A G + VAVK L A + F E M ++ HRNLI+
Sbjct: 26 LGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIR 85
Query: 422 ILHGVAV 428
L+GV +
Sbjct: 86 -LYGVVL 91
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 53 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 111
Query: 420 IKIL 423
+ +L
Sbjct: 112 LSLL 115
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 17/77 (22%)
Query: 357 FRATDEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFD---------V 406
F++ +++ L+G+G +G V K R D VA+K F ES D
Sbjct: 21 FQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKF-------LESDDDKMVKKIAMR 73
Query: 407 ECEMMKNIRHRNLIKIL 423
E +++K +RH NL+ +L
Sbjct: 74 EIKLLKQLRHENLVNLL 90
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 364 SENNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCG---RAFESFDVECEMMKNIRHR 417
+ +IG G FG VYK L + EV V + L+ G + F E +M H
Sbjct: 47 TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHH 106
Query: 418 NLIKILHGV 426
N+I+ L GV
Sbjct: 107 NIIR-LEGV 114
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 40 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 98
Query: 420 IKIL 423
+ +L
Sbjct: 99 LSLL 102
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 36 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 87
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 87 EDNKLEGSIPDDI-CHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL- 144
E NKL+ S+P + L +L +L L N++ F LT L I+ L NKL S+P
Sbjct: 36 ESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNG 94
Query: 145 TFWNLKDILNLNFSSNFLTS 164
F L + L +N L S
Sbjct: 95 VFDKLTQLKELALDTNQLKS 114
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 107 RLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWNLKDILNLNFSSNFLTSP 165
RL+L+ NKL F LT L +SL N++ S+P F L + L N L S
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90
Query: 166 LPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLQGSIP 215
LP + L L + N V L +L+ ++L N S P
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 225 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 279
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 35 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 93
Query: 420 IKIL 423
+ +L
Sbjct: 94 LSLL 97
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G G FG V+ +VA+K L+ G + ESF E ++MK ++H L+++ V+
Sbjct: 17 LGNGQFGEVWMGTWNGNTKVAIKT--LKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVVS 74
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 36 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 94
Query: 420 IKIL 423
+ +L
Sbjct: 95 LSLL 98
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 27 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 85
Query: 420 IKIL 423
+ +L
Sbjct: 86 LSLL 89
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 31 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 23 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 74
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVFN 394
++F NL+GKG F VY+A + +EVA+K+ +
Sbjct: 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMID 45
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 360 TDEFSENNLIGKGGFGSVYK-ARLGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRH 416
+D + +GKG F V + +E A K+ N + R F+ + E + + ++H
Sbjct: 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 64
Query: 417 RNLIKILHGVAVITF 431
N++++ + +F
Sbjct: 65 PNIVRLHDSIQEESF 79
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 36 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 94
Query: 420 IKIL 423
+ +L
Sbjct: 95 LSLL 98
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 321
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 360 TDEFSENNLIGKGGFGSVYK-ARLGDRMEVAVKVFNLQ--CGRAFESFDVECEMMKNIRH 416
+D + +GKG F V + +E A K+ N + R F+ + E + + ++H
Sbjct: 4 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQH 63
Query: 417 RNLIKILHGVAVITF 431
N++++ + +F
Sbjct: 64 PNIVRLHDSIQEESF 78
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVF---NLQCGRAFESFDVECEMMKNIRH 416
D+F +GKG FG+VY AR ++ +A+KV L+ E E+ ++RH
Sbjct: 15 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 74
Query: 417 RNLIKI 422
N++++
Sbjct: 75 PNILRM 80
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 30 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 88
Query: 420 IKIL 423
+ +L
Sbjct: 89 LSLL 92
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 34 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 92
Query: 420 IKIL 423
+ +L
Sbjct: 93 LSLL 96
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 34 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 92
Query: 420 IKIL 423
+ +L
Sbjct: 93 LSLL 96
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 35 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 93
Query: 420 IKIL 423
+ +L
Sbjct: 94 LSLL 97
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 33 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 91
Query: 420 IKIL 423
+ +L
Sbjct: 92 LSLL 95
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSV 142
I HL L L++ N + S LP FSNLT+L + L SNK+ S+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 33 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 91
Query: 420 IKIL 423
+ +L
Sbjct: 92 LSLL 95
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVF---NLQCGRAFESFDVECEMMKNIRH 416
D+F +GKG FG+VY AR ++ +A+KV L+ E E+ ++RH
Sbjct: 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 417 RNLIKI 422
N++++
Sbjct: 74 PNILRM 79
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 35 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 93
Query: 420 IKIL 423
+ +L
Sbjct: 94 LSLL 97
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 35 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 93
Query: 420 IKIL 423
+ +L
Sbjct: 94 LSLL 97
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 31 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSV 142
I HL L L++ N + S LP FSNLT+L + L SNK+ S+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 3 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 366 NNLIGKGGFGSVYKARL----GDRMEVAVKVFN--LQCGRAFESFDVECEMMKNIRHRNL 419
N +IG+G FG VY L G ++ AVK N G F E +MK+ H N+
Sbjct: 32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEV-SQFLTEGIIMKDFSHPNV 90
Query: 420 IKIL 423
+ +L
Sbjct: 91 LSLL 94
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSV 142
I HL L L++ N + S LP FSNLT+L + L SNK+ S+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSV 142
I HL L L++ N + S LP FSNLT+L + L SNK+ S+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 25 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 79
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 99 ICHLAELYRLDLDGNKL-SGSLPACFSNLTSLRIVSLGSNKLTSV 142
I HL L L++ N + S LP FSNLT+L + L SNK+ S+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 336 PSNDANMPLVATWRTFSYLELFRATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 3 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 34 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 88
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 76
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 22 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 76
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 77
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 73
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 26 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 80
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME---VAVKVFNLQCGRAF-ESFDVECEMMKNI-R 415
D + ++LIGKG FG V KA DR+E VA+K+ ++ +AF +E +++ + +
Sbjct: 54 DRYEIDSLIGKGSFGQVVKAY--DRVEQEWVAIKI--IKNKKAFLNQAQIEVRLLELMNK 109
Query: 416 HRNLIK--ILHGVAVITFTVCLCL 437
H +K I+H F LCL
Sbjct: 110 HDTEMKYYIVHLKRHFMFRNHLCL 133
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME---VAVKVFNLQCGRAF-ESFDVECEMMKNI-R 415
D + ++LIGKG FG V KA DR+E VA+K+ ++ +AF +E +++ + +
Sbjct: 54 DRYEIDSLIGKGSFGQVVKAY--DRVEQEWVAIKI--IKNKKAFLNQAQIEVRLLELMNK 109
Query: 416 HRNLIK--ILHGVAVITFTVCLCL 437
H +K I+H F LCL
Sbjct: 110 HDTEMKYYIVHLKRHFMFRNHLCL 133
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME---VAVKVFNLQCGRAF-ESFDVECEMMKNI-R 415
D + ++LIGKG FG V KA DR+E VA+K+ ++ +AF +E +++ + +
Sbjct: 35 DRYEIDSLIGKGSFGQVVKAY--DRVEQEWVAIKI--IKNKKAFLNQAQIEVRLLELMNK 90
Query: 416 HRNLIK--ILHGVAVITFTVCLCL 437
H +K I+H F LCL
Sbjct: 91 HDTEMKYYIVHLKRHFMFRNHLCL 114
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 54/255 (21%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 134
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N ++ I+ N++ P + +L L RLD+ NK+S S+
Sbjct: 135 ELSSNTISD---ISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDISV 189
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 248
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 249 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 306
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 307 TYLTLYFNNISDISP 321
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 54/255 (21%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 86 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 139
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N ++ I+ N++ P + +L L RLD+ NK+S S+
Sbjct: 140 ELSSNTISD---ISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV 194
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 253
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 254 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 311
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 312 TYLTLYFNNISDISP 326
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 77
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 23 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 77
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 354 LELFRATDEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFD-------V 406
L++ + + + +G+G F +VYKAR + ++ V + ++ G E+ D
Sbjct: 3 LDVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQI-VAIKKIKLGHRSEAKDGINRTALR 61
Query: 407 ECEMMKNIRHRNLIKIL 423
E ++++ + H N+I +L
Sbjct: 62 EIKLLQELSHPNIIGLL 78
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 103/256 (40%), Gaps = 52/256 (20%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+SN LT +Y+ N + I +++ NL++ L + + NIS P ++NLT +
Sbjct: 84 LSNLVKLTNLYIGTNKITDI---SALQNLTN-LRELYLNEDNISDISP--LANLTKXYSL 137
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSGSLP 120
NLG N N S LS ++K++ P I +L +LY L L+ N++ P
Sbjct: 138 NLGANH-NLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194
Query: 121 AC--------------------FSNLTSLRIVSLGSNKLTSV-PLT-----FW------- 147
+N T L + +G+NK+T + PL W
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQ 254
Query: 148 --------NLKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKN 199
+L + LN SN ++ L NL L + + N IGGL N
Sbjct: 255 ISDINAVKDLTKLKXLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDXEVIGGLTN 312
Query: 200 LEYLFLGYNRLQGSIP 215
L LFL N + P
Sbjct: 313 LTTLFLSQNHITDIRP 328
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G G FG V+ + +VAVK L+ G + ++F E +MK ++H L+++ A
Sbjct: 20 LGAGQFGEVWMGYYNNSTKVAVK--TLKPGTMSVQAFLEEANLMKTLQHDKLVRLY---A 74
Query: 428 VIT 430
V+T
Sbjct: 75 VVT 77
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 21 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 75
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGR-AFESFDVECEMMKNIRHRNLIKILHGVA 427
+G G FG V+ + +VAVK L+ G + ++F E +MK ++H L+++ A
Sbjct: 21 LGAGQFGEVWMGYYNNSTKVAVK--TLKPGTMSVQAFLEEANLMKTLQHDKLVRLY---A 75
Query: 428 VIT 430
V+T
Sbjct: 76 VVT 78
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 369 IGKGGFGSVYKARLGD-RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKIL 423
+G G +G VY+ + VAVK + E F E +MK I+H NL+++L
Sbjct: 19 LGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKEIKHPNLVQLL 73
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 54/255 (21%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 85 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 138
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N ++ I+ N++ P + +L L RLD+ NK+S S+
Sbjct: 139 ELSSNTISD---ISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV 193
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 194 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 252
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 253 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 310
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 311 TYLTLYFNNISDISP 325
>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|B Chain B, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|C Chain C, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|D Chain D, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
pdb|2X7F|E Chain E, Crystal Structure Of The Kinase Domain Of Human Traf2- And
Nck-Interacting Kinase With Wee1chk1 Inhibitor
Length = 326
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 367 NLIGKGGFGSVYKAR-LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHG 425
L+G G +G VYK R + A+KV ++ G E E M+K H I +G
Sbjct: 30 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDV-TGDEEEEIKQEINMLKKYSHHRNIATYYG 88
Query: 426 V 426
Sbjct: 89 A 89
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 106/255 (41%), Gaps = 54/255 (21%)
Query: 1 MSNCKSLTLIYLSNNPLDGILPKTSVGNLSHSLEDFRMYNCNISGGIPEEISNLTNSTIV 60
+ N L I ++NN + I P ++ NL+ ++N I+ P + NLTN +
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTG----LTLFNNQITDIDP--LKNLTNLNRL 134
Query: 61 NLGGNKLNGSIPITLSXXXXXXXXXXEDNKLEGSIPDDICHLAELYRLDLDGNKLSG-SL 119
L N ++ I+ N++ P + +L L RLD+ NK+S S+
Sbjct: 135 ELSSNTISD---ISALSGLTSLQQLNFGNQVTDLKP--LANLTTLERLDISSNKVSDISV 189
Query: 120 PACFSN-------------------LTSLRIVSLGSNKLTSVPLTFWNLKDILNLNFSSN 160
A +N LT+L +SL N+L + T +L ++ +L+ ++N
Sbjct: 190 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN 248
Query: 161 FLTSPLPL--------------EIGNLKVLIG------IDFSMNNFSGVIPTEIGGLKNL 200
+++ PL +I N+ L G ++ + N + P I LKNL
Sbjct: 249 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNL 306
Query: 201 EYLFLGYNRLQGSIP 215
YL L +N + P
Sbjct: 307 TYLTLYFNNISDISP 321
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Query: 88 DNKLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFW 147
DN+L S+P +ELY+L N+L+ SLPA S L L IVS N+LTS+P+
Sbjct: 190 DNQL-ASLP---TLPSELYKLWAYNNRLT-SLPALPSGLKEL-IVS--GNRLTSLPVLPS 241
Query: 148 NLKDILNLNFSSNFLTSPLPL 168
LK+++ S N LTS LP+
Sbjct: 242 ELKELM---VSGNRLTS-LPM 258
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 16/79 (20%)
Query: 366 NNLIGKGGFGSVYKA---RLGD-----RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
N +G+G F ++K +GD EV +KV + ESF MM + H+
Sbjct: 13 NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHK 72
Query: 418 NLIKILHGVAVITFTVCLC 436
+L V+ + VC+C
Sbjct: 73 HL--------VLNYGVCVC 83
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHRNLIKILHGVAV 428
+G G G V+ +VAVK Q + ++F E +MK ++H+ L+++ AV
Sbjct: 21 LGAGQAGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLVRLY---AV 76
Query: 429 IT 430
+T
Sbjct: 77 VT 78
>pdb|2WET|A Chain A, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|B Chain B, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|C Chain C, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|D Chain D, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WEU|A Chain A, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|B Chain B, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|C Chain C, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|D Chain D, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
Length = 511
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLR 130
LAE RL +G++L +LP+C+ L S++
Sbjct: 483 LAEFERLRREGDELIAALPSCYEYLASIQ 511
>pdb|2WES|A Chain A, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|B Chain B, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|C Chain C, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|D Chain D, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
Length = 511
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLR 130
LAE RL +G++L +LP+C+ L S++
Sbjct: 483 LAEFERLRREGDELIAALPSCYEYLASIQ 511
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query: 366 NNLIGKGGFGSVYKA---RLGD-----RMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
N +G+G F ++K +GD EV +KV + ESF MM + H+
Sbjct: 13 NESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHK 72
Query: 418 NLIKILHGVAVITFTVCLC 436
+L V+ + VC C
Sbjct: 73 HL--------VLNYGVCFC 83
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKVF---NLQCGRAFESFDVECEMMKNIRH 416
D+F +GKG FG+VY AR ++ +A+KV L+ E E+ ++RH
Sbjct: 14 DDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73
Query: 417 RNLIKI 422
N++++
Sbjct: 74 PNILRM 79
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 366 NNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCGR-AFESFDVECEMMKNI-RHRNLI 420
++IG+G FG V KAR+ G RM+ A+K + F E E++ + H N+I
Sbjct: 20 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 421 KIL 423
+L
Sbjct: 80 NLL 82
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 90 KLEGSIPDDICHLAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPL-TFWN 148
KLE + D L +L L+L N+L+ F LT L ++L N+L S+P+ F N
Sbjct: 54 KLEPGVFDS---LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDN 110
Query: 149 LKDILNLNFSSNFLTSPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE 201
LK + ++ +N P + +L ++ + + S V P GG+ N++
Sbjct: 111 LKSLTHIYLFNN------PWDCECSDILYLKNWIVQHASIVNPLGNGGVDNVK 157
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 366 NNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCGR-AFESFDVECEMMKNI-RHRNLI 420
++IG+G FG V KAR+ G RM+ A+K + F E E++ + H N+I
Sbjct: 30 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 421 KIL 423
+L
Sbjct: 90 NLL 92
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 9 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 39
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 10 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 32 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 62
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 366 NNLIGKGGFGSVYKARL---GDRMEVAVKVFNLQCGR-AFESFDVECEMMKNI-RHRNLI 420
++IG+G FG V KAR+ G RM+ A+K + F E E++ + H N+I
Sbjct: 27 QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 421 KIL 423
+L
Sbjct: 87 NLL 89
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 5 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 10 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 10 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 9 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 39
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 362 EFSENNLIGKGGFGSVYKA-RLGDRMEVAVK 391
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 8 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 38
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 352 SYLELFRATDEFSENNLIGKGGFGSVYKA--RLGDRMEVAVKVFNLQC-GRAFESFDVEC 408
Y EL + + + IG GGF V A L M VA+K+ + G E
Sbjct: 4 DYDELLKY---YELHETIGTGGFAKVKLACHILTGEM-VAIKIMDKNTLGSDLPRIKTEI 59
Query: 409 EMMKNIRHRNLIKILH 424
E +KN+RH+++ ++ H
Sbjct: 60 EALKNLRHQHICQLYH 75
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 362 EFSENNLIGKGGFGSVYKAR 381
+F E LIG GGFG V+KA+
Sbjct: 13 DFKEIELIGSGGFGQVFKAK 32
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC-GRAFESFDV-ECEMMKNIRHRN 418
+++ + +G+G +G VYKA+ VA+K L S + E ++K + H N
Sbjct: 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80
Query: 419 LIKILHGVAVITFTVCLCL 437
++ + + VI CL L
Sbjct: 81 IVSL---IDVIHSERCLTL 96
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 362 EFSENNLIGKGGFGSVYKAR 381
+F E LIG GGFG V+KA+
Sbjct: 12 DFKEIELIGSGGFGQVFKAK 31
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEVAVKVFNLQC-GRAFESFDV-ECEMMKNIRHRN 418
+++ + +G+G +G VYKA+ VA+K L S + E ++K + H N
Sbjct: 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN 80
Query: 419 LIKILHGVAVITFTVCLCL 437
++ + + VI CL L
Sbjct: 81 IVSL---IDVIHSERCLTL 96
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 362 EFSEN----NLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI 414
EF EN IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 415 RHRNLIKIL 423
H N++K+L
Sbjct: 67 NHPNIVKLL 75
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 64 HPNIVKLL 71
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 362 EFSEN----NLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNI 414
EF EN IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 7 EFMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL 66
Query: 415 RHRNLIKIL 423
H N++K+L
Sbjct: 67 NHPNIVKLL 75
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 5 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 64
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 65 HPNIVKLL 72
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 64 HPNIVKLL 71
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 64 HPNIVKLL 71
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 64 HPNIVKLL 71
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 63 HPNIVKLL 70
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 64 HPNIVKLL 71
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 4 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 63
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 64 HPNIVKLL 71
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 418 NLIKIL 423
N++K+L
Sbjct: 62 NIVKLL 67
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 62 HPNIVKLL 69
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 63 HPNIVKLL 70
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 63 HPNIVKLL 70
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 3 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 62
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 63 HPNIVKLL 70
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 61 HPNIVKLL 68
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 61 HPNIVKLL 68
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 62 HPNIVKLL 69
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 61 HPNIVKLL 68
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 62 HPNIVKLL 69
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 17/73 (23%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQCGRAFESFD---------VECEM 410
+++ + IG+G +G V+K R D + VA+K F ES D E M
Sbjct: 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKF-------LESEDDPVIKKIALREIRM 55
Query: 411 MKNIRHRNLIKIL 423
+K ++H NL+ +L
Sbjct: 56 LKQLKHPNLVNLL 68
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 418 NLIKIL 423
N++K+L
Sbjct: 63 NIVKLL 68
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRME-VAVKVFNLQC-GRAFESFDV-ECEMMKNIRHR 417
+ F + IG+G +G VYKAR E VA+K L S + E ++K + H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 418 NLIKIL 423
N++K+L
Sbjct: 63 NIVKLL 68
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 418 NLIKIL 423
N++K+L
Sbjct: 63 NIVKLL 68
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 418 NLIKIL 423
N++K+L
Sbjct: 63 NIVKLL 68
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 369 IGKGGFGSVY-KARLGDRMEVAVKVFNLQCGRA-FESFDVECEMMKNIRHRNLIKIL 423
+G G FG V+ +E +K N + E + E E++K++ H N+IKI
Sbjct: 30 LGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIF 86
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 418 NLIKIL 423
N++K+L
Sbjct: 62 NIVKLL 67
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 2 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 61
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 62 HPNIVKLL 69
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 61 HPNIVKLL 68
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 418 NLIKIL 423
N++K+L
Sbjct: 62 NIVKLL 67
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 62
Query: 418 NLIKIL 423
N++K+L
Sbjct: 63 NIVKLL 68
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 418 NLIKIL 423
N++K+L
Sbjct: 62 NIVKLL 67
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 418 NLIKIL 423
N++K+L
Sbjct: 62 NIVKLL 67
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61
Query: 418 NLIKIL 423
N++K+L
Sbjct: 62 NIVKLL 67
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 7 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 66
Query: 418 NLIKIL 423
N++K+L
Sbjct: 67 NIVKLL 72
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 361 DEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIRHR 417
+ F + IG+G +G VYKAR G+ + + + + + E ++K + H
Sbjct: 4 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 63
Query: 418 NLIKIL 423
N++K+L
Sbjct: 64 NIVKLL 69
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 359 ATDEFSENNLIGKGGFGSVYKAR---LGDRMEVAVKVFNLQCGRAFESFDVECEMMKNIR 415
+ + F + IG+G +G VYKAR G+ + + + + + E ++K +
Sbjct: 1 SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELN 60
Query: 416 HRNLIKIL 423
H N++K+L
Sbjct: 61 HPNIVKLL 68
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 361 DEFSENNLIGKGGFGSVYKAR-LGDRMEVAVKV-FNLQCGR--AFESFDVECEMMKNIRH 416
D+F +GKG FG+VY AR VA+KV F Q + E E+ ++ H
Sbjct: 23 DDFEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHH 82
Query: 417 RNLIKI 422
N++++
Sbjct: 83 PNILRL 88
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 369 IGKGGFGSVYKARLGDRMEVAVKVFNLQCGRAFES----FDVECEMMKNIRHRNLIK 421
IG+G F +VYK L V V LQ + +S F E E +K ++H N+++
Sbjct: 34 IGRGSFKTVYKG-LDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQHPNIVR 89
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 361 DEFSENNLIGKGGFGSVYKARLGDRMEV-AVKVFNLQCGRAFESFDVECEMMKN 413
D F ++GKG FG V AR+ + ++ AVKV L+ + DVEC M +
Sbjct: 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKV--LKKDVILQDDDVECTMTEK 74
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWN 148
L EL L L GN+L P + L +SL +N+LT +P N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWN 148
L EL L L GN+L P + L +SL +N+LT +P N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 359 ATDEFSENNLIGKGGFGSVYKA-RLGDRMEVAVKVFNLQCGRAFESFDV-ECEMMKNIRH 416
++ +F + +G G + +VYK + VA+K L S + E +MK ++H
Sbjct: 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62
Query: 417 RNLIKI 422
N++++
Sbjct: 63 ENIVRL 68
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWN 148
L EL L L GN+L P + L +SL +N+LT +P N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 102 LAELYRLDLDGNKLSGSLPACFSNLTSLRIVSLGSNKLTSVPLTFWN 148
L EL L L GN+L P + L +SL +N+LT +P N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLN 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.141 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,995,251
Number of Sequences: 62578
Number of extensions: 551117
Number of successful extensions: 1925
Number of sequences better than 100.0: 419
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 343
Number of HSP's that attempted gapping in prelim test: 1414
Number of HSP's gapped (non-prelim): 578
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)