Query 010858
Match_columns 499
No_of_seqs 323 out of 1591
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 1E-113 3E-118 893.8 38.6 373 16-388 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 2E-112 8E-117 880.4 37.9 367 15-381 1-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 4E-109 1E-113 860.4 33.0 372 12-386 9-381 (388)
4 1c3p_A Protein (HDLP (histone 100.0 1.1E-89 3.7E-94 714.6 28.9 324 17-343 2-331 (375)
5 1zz1_A Histone deacetylase-lik 100.0 1.7E-86 5.9E-91 689.3 31.7 315 18-343 2-343 (369)
6 2vqm_A HD4, histone deacetylas 100.0 8.2E-86 2.8E-90 693.2 25.3 364 15-394 6-400 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 2.7E-83 9.3E-88 657.5 27.9 305 20-329 2-341 (341)
8 3men_A Acetylpolyamine aminohy 100.0 1.3E-82 4.5E-87 656.2 28.9 306 19-330 22-360 (362)
9 2pqp_A HD7A, histone deacetyla 100.0 7.5E-82 2.5E-86 659.9 28.6 353 16-384 35-419 (421)
10 4hf7_A Putative acylhydrolase; 79.9 1.9 6.6E-05 39.3 5.0 50 257-306 74-124 (209)
11 3ced_A Methionine import ATP-b 65.7 2 6.7E-05 35.8 1.2 57 250-306 34-95 (98)
12 3mil_A Isoamyl acetate-hydroly 62.7 18 0.00063 32.5 7.3 60 242-307 56-120 (240)
13 1ivn_A Thioesterase I; hydrola 62.3 16 0.00056 32.0 6.7 46 255-306 56-105 (190)
14 4h08_A Putative hydrolase; GDS 61.1 21 0.00072 31.6 7.3 57 232-300 49-109 (200)
15 3p94_A GDSL-like lipase; serin 58.8 9.9 0.00034 33.5 4.6 50 255-307 68-121 (204)
16 1es9_A PAF-AH, platelet-activa 56.8 13 0.00043 34.1 5.1 48 256-307 88-137 (232)
17 1yzf_A Lipase/acylhydrolase; s 52.6 25 0.00084 30.3 6.1 47 255-307 61-111 (195)
18 2qsw_A Methionine import ATP-b 51.8 3.1 0.00011 34.5 0.0 56 251-306 38-97 (100)
19 3hp4_A GDSL-esterase; psychrot 51.5 15 0.00052 31.8 4.6 49 255-306 60-109 (185)
20 2vpt_A Lipolytic enzyme; ester 51.2 12 0.00039 33.9 3.8 56 243-306 69-126 (215)
21 3d2m_A Putative acetylglutamat 50.9 15 0.00053 37.9 5.2 70 234-311 15-85 (456)
22 3bzw_A Putative lipase; protei 50.7 16 0.00056 34.5 5.0 37 244-282 73-110 (274)
23 2q0q_A ARYL esterase; SGNH hyd 47.9 25 0.00086 31.1 5.5 49 255-307 76-138 (216)
24 3dhx_A Methionine import ATP-b 44.5 6.2 0.00021 33.1 0.8 56 251-306 36-95 (106)
25 3rjt_A Lipolytic protein G-D-S 44.1 6.9 0.00024 34.6 1.1 53 255-307 77-137 (216)
26 3dci_A Arylesterase; SGNH_hydr 43.8 38 0.0013 30.9 6.2 49 254-306 93-153 (232)
27 2qrr_A Methionine import ATP-b 42.5 5.7 0.0002 32.9 0.2 56 251-306 38-97 (101)
28 1uf3_A Hypothetical protein TT 41.2 64 0.0022 28.7 7.2 51 249-308 21-71 (228)
29 2buf_A Acetylglutamate kinase; 41.1 57 0.002 31.9 7.3 63 243-312 8-70 (300)
30 1fxw_F Alpha2, platelet-activa 39.4 32 0.0011 31.3 4.9 42 257-306 90-137 (229)
31 2o14_A Hypothetical protein YX 38.8 30 0.001 35.0 5.0 50 253-306 221-275 (375)
32 2q8u_A Exonuclease, putative; 36.8 61 0.0021 31.6 6.8 58 243-308 44-104 (336)
33 3av0_A DNA double-strand break 36.8 63 0.0022 32.4 7.1 57 244-308 44-103 (386)
34 2ap9_A NAG kinase, acetylgluta 35.5 34 0.0012 33.5 4.7 66 240-312 4-69 (299)
35 1ii7_A MRE11 nuclease; RAD50, 32.1 1.2E+02 0.0041 29.5 8.1 58 243-308 23-83 (333)
36 3skv_A SSFX3; jelly roll, GDSL 31.0 42 0.0014 34.3 4.6 52 254-307 237-290 (385)
37 1k7c_A Rhamnogalacturonan acet 29.9 1E+02 0.0035 28.3 6.7 21 253-273 54-75 (233)
38 3aek_B Light-independent proto 29.1 68 0.0023 34.2 6.0 56 248-314 72-128 (525)
39 3dff_A Teicoplanin pseudoaglyc 27.4 61 0.0021 31.4 4.8 31 245-275 132-162 (273)
40 3dfi_A Pseudoaglycone deacetyl 26.3 69 0.0023 30.9 5.0 31 245-275 129-159 (270)
41 3dc7_A Putative uncharacterize 25.9 39 0.0013 30.5 3.0 48 260-307 81-136 (232)
42 2rd5_A Acetylglutamate kinase- 25.9 34 0.0012 33.5 2.7 63 243-312 18-80 (298)
43 4fva_A 5'-tyrosyl-DNA phosphod 25.5 61 0.0021 28.9 4.2 19 252-270 35-53 (256)
44 1vjg_A Putative lipase from th 24.8 49 0.0017 29.5 3.4 47 259-307 86-136 (218)
45 2bty_A Acetylglutamate kinase; 24.2 59 0.002 31.3 4.1 62 244-312 4-65 (282)
46 1g3q_A MIND ATPase, cell divis 23.7 60 0.0021 29.4 3.9 18 172-189 28-45 (237)
47 1y80_A Predicted cobalamin bin 23.7 1.1E+02 0.0038 27.9 5.7 47 255-312 133-182 (210)
48 2whl_A Beta-mannanase, baman5; 23.5 2.5E+02 0.0084 26.6 8.4 65 244-313 94-163 (294)
49 3jug_A Beta-mannanase; TIM-bar 23.1 2.3E+02 0.008 28.3 8.4 65 244-313 117-186 (345)
50 3tho_B Exonuclease, putative; 22.8 1.3E+02 0.0046 30.1 6.6 57 243-308 26-86 (379)
51 2wao_A Endoglucanase E; plant 22.5 51 0.0018 32.4 3.3 48 258-307 210-260 (341)
52 4f1h_A Tyrosyl-DNA phosphodies 22.2 80 0.0027 27.5 4.2 17 253-269 26-42 (250)
53 3q9l_A Septum site-determining 22.0 68 0.0023 29.4 3.9 19 171-189 27-45 (260)
54 2xdq_B Light-independent proto 21.4 90 0.0031 32.9 5.1 55 251-315 78-134 (511)
55 2jjx_A Uridylate kinase, UMP k 21.0 1E+02 0.0036 29.2 5.1 51 261-313 11-64 (255)
56 1hyq_A MIND, cell division inh 20.5 76 0.0026 29.3 3.9 17 173-189 29-45 (263)
57 4gz1_A Tyrosyl-DNA phosphodies 20.4 90 0.0031 27.7 4.2 17 253-269 32-48 (256)
58 3t1i_A Double-strand break rep 20.1 2E+02 0.0068 29.9 7.3 46 244-297 55-100 (431)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-113 Score=893.81 Aligned_cols=373 Identities=62% Similarity=1.215 Sum_probs=356.4
Q ss_pred CCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHHH
Q 010858 16 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ 95 (499)
Q Consensus 16 ~~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~~ 95 (499)
|+||+|||||++++|.+|++|||+|.|+++++++|+++||++++++++|++|+.++|++||+++||++|++.+++...+.
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887655433
Q ss_pred HHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHHHhcC
Q 010858 96 LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (499)
Q Consensus 96 ~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Llk~~ 175 (499)
.+.+.+|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++.+
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 44566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccccCCccchhccccCCCEEEeecCCCCC-CCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHHHH
Q 010858 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (499)
Q Consensus 176 ~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~-ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~iv~ 254 (499)
+||||||||||||||||++||+|++|||+|||+++. ||||||..+|+|.|+|++|++||||++|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~ 241 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN 241 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999965 8999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCCCC
Q 010858 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~~~~~ 334 (499)
|++++|+||+||+|||||++.+||||+|+||++||++|+++++++++|+++||||||+++++||||+++|++++|.++++
T Consensus 242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhccCCCcccccC-CCCCCCcCcHHHHHHHHHHHHHHhccCCCCCCcc
Q 010858 335 KMPQHEYYEYFGPDYTLHVA-PSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQ 388 (499)
Q Consensus 335 ~~P~~~y~~~~~p~~~l~~~-~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p~v~ 388 (499)
.+|+++|++||+|+|+|+++ +++|+|+|+++|||+|+++|++||++|+++||||
T Consensus 322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.2e-112 Score=880.35 Aligned_cols=367 Identities=68% Similarity=1.279 Sum_probs=356.0
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHH
Q 010858 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (499)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~ 94 (499)
.|+||+|||||++++|+||++|||+|+|+++++++|.++||++++++++|++|+.++|++|||++||++|++.+++...+
T Consensus 1 ~~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (367)
T 3max_A 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE 80 (367)
T ss_dssp CCCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG
T ss_pred CCCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999988765543
Q ss_pred HHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHHHhc
Q 010858 95 QLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ 174 (499)
Q Consensus 95 ~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Llk~ 174 (499)
..+.+.+|+++.|||+|+++|++|+++|||+|.||+++++|+.++|+||+||+|||++++|+||||||||||||++|++.
T Consensus 81 ~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~ 160 (367)
T 3max_A 81 YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY 160 (367)
T ss_dssp CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT
T ss_pred hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc
Confidence 33456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHHHHHH
Q 010858 175 HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (499)
Q Consensus 175 ~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~~iv~ 254 (499)
++||||||||||||||||++||+|++|||+|||+++.||||||..+++|.|+|++|++||||++|++|++|+.+|+++|.
T Consensus 161 ~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~~ 240 (367)
T 3max_A 161 HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIIS 240 (367)
T ss_dssp CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSSCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCCCCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCCCC
Q 010858 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~~~~~ 334 (499)
|++++|+||+||+|||||++.+||||+|+||++||.+|+++++++++|+|+|+||||++++|||||+++|++++|.++++
T Consensus 241 ~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~~ 320 (367)
T 3max_A 241 KVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPN 320 (367)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccC
Q 010858 335 KMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKL 381 (499)
Q Consensus 335 ~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l 381 (499)
.+|+|+||+||||+|+|++++++|+|+|+++|||+|+++++|||++|
T Consensus 321 ~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 321 ELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999986
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=3.8e-109 Score=860.40 Aligned_cols=372 Identities=41% Similarity=0.824 Sum_probs=347.4
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchh
Q 010858 12 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (499)
Q Consensus 12 ~~~~~~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~ 91 (499)
...+|+||+|||||++++| +++|||+|+|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++..
T Consensus 9 ~~~~~~~~~~~y~~~~~~~--~~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~ 86 (388)
T 3ew8_A 9 DSGQSLVPVYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEG 86 (388)
T ss_dssp -----CCCEEECCHHHHHH--HTTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC
T ss_pred ccCCCCcEEEEEChHHhcc--CCCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhcccc
Confidence 3456889999999999987 47899999999999999999999999999999999999999999999999999876543
Q ss_pred hHHHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHH
Q 010858 92 QQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILEL 171 (499)
Q Consensus 92 ~~~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~L 171 (499)
... .....+|+++.|||+|+++|++|+++|||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|
T Consensus 87 ~~~-~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l 165 (388)
T 3ew8_A 87 DDD-HPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL 165 (388)
T ss_dssp ---------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHH
T ss_pred ccc-chhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHH
Confidence 211 1234578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCC-CCCCCCCCCccccCCCCCceeeccCCCCCCChHHHHHHHH
Q 010858 172 LKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFK 250 (499)
Q Consensus 172 lk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPgTG~~~eiG~g~G~g~~vNVPL~~G~~D~~y~~~f~ 250 (499)
++.++||||||||||||||||++||+|++|||+|||+++ .||||||..+++|.|+|++|++||||++|++|++|+.+|+
T Consensus 166 ~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~ 245 (388)
T 3ew8_A 166 RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICE 245 (388)
T ss_dssp TTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHH
T ss_pred HhcCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHH
Confidence 998999999999999999999999999999999999994 5999999999999999999999999999999999999999
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCC
Q 010858 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~ 330 (499)
++|.|++++|+||+||+|||||++.+||||+|+||++||++|+++|+++++|+++|+||||++++|||||+++|++|+|.
T Consensus 246 ~~l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g~ 325 (388)
T 3ew8_A 246 SVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGK 325 (388)
T ss_dssp HHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccCCCCCC
Q 010858 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPS 386 (499)
Q Consensus 331 ~~~~~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~~p~ 386 (499)
++++++|.++||+||+|+|+|++++++|+|+|+++||++|+++|++||++|++...
T Consensus 326 ~l~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~~ 381 (388)
T 3ew8_A 326 TLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEGR 381 (388)
T ss_dssp CCCSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC---
T ss_pred CCCCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999988653
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=1.1e-89 Score=714.61 Aligned_cols=324 Identities=33% Similarity=0.536 Sum_probs=302.5
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchhhHHHH
Q 010858 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (499)
Q Consensus 17 ~~v~~~yd~~~~~~~~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~~~~~~ 96 (499)
++++|+|||+|..|.+|++|||+|.|+++++++|+++||++.+++++|++|+.++|++||+++||++|++.++.... ..
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~-~~ 80 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCV-PK 80 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSC-CT
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCC-Ch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999876542100 00
Q ss_pred HHhhhccc-CCCCcCCcchHHHHHHHHHHHHHHHHHHhcCccceeeecCCCCCCcccCCCCcceeechHHHHHHHHHhcC
Q 010858 97 RQLKRFNV-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH 175 (499)
Q Consensus 97 ~~l~~f~l-~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~iAin~~GG~HHA~~~~AsGFCy~NdiaiAi~~Llk~~ 175 (499)
..+.+|++ +.|||+|+++|++|++++||+|.||+++++|+ +||||+||+|||++++|+||||||||||||++|+++.
T Consensus 81 ~~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g 158 (375)
T 1c3p_A 81 GAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKG 158 (375)
T ss_dssp THHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTT
T ss_pred HHhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhC
Confidence 12356777 58999999999999999999999999999997 8999999999999999999999999999999999876
Q ss_pred -CcEEEEEccccCCccchhccccCCCEEEeecCCCCC-CCCCCCCCcccc-CCCCCceeeccCCCCCCChHHHHHHHHHH
Q 010858 176 -ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRDIG-YSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (499)
Q Consensus 176 -~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~-ffPgTG~~~eiG-~g~G~g~~vNVPL~~G~~D~~y~~~f~~i 252 (499)
+||||||||||||||||++||+|++|||+|+|+++. ||||||..+++| .|+|++|++|||||+|++|++|+.+|+++
T Consensus 159 ~~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~ 238 (375)
T 1c3p_A 159 FKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKS 238 (375)
T ss_dssp CCCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999965 799999999999 99999999999999999999999999999
Q ss_pred HHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhHHHHHHHHHHcCCCC
Q 010858 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEV 332 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~~vAr~w~~~t~~llg~~~ 332 (499)
|.|++++|+||+||+|||||++.+||||+|+||.+||.+++++|+++..|++++|||||++.+++|||++++++|+|.++
T Consensus 239 l~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~ 318 (375)
T 1c3p_A 239 LEIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREV 318 (375)
T ss_dssp HHHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCCCCc--chhhh
Q 010858 333 DDKMPQ--HEYYE 343 (499)
Q Consensus 333 ~~~~P~--~~y~~ 343 (499)
++.+|. .++++
T Consensus 319 ~~~lp~~~~~~~~ 331 (375)
T 1c3p_A 319 PEKLNNKAKELLK 331 (375)
T ss_dssp CSSCCHHHHHHHH
T ss_pred CccCCHHHHHHHH
Confidence 988995 34444
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=1.7e-86 Score=689.26 Aligned_cols=315 Identities=23% Similarity=0.384 Sum_probs=296.2
Q ss_pred eEEEEEcCCCCCCCCCCC----------------CCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHH
Q 010858 18 KVCYFYDPEVGNYYYGQG----------------HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYV 81 (499)
Q Consensus 18 ~v~~~yd~~~~~~~~g~~----------------HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv 81 (499)
+++|||||.|..|.++.+ |||+|.|+++++++|+++||++.+++++|++|+.++|++||+++||
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv 81 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHL 81 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHH
T ss_pred eEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHH
Confidence 689999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCchhhHHHHHHhhhcccCC-CCcCCcchHHHHHHHHHHHHHHHHHHhcCccc--eeeecCCCCCCcccCCCCcc
Q 010858 82 SFLRSITPETQQDQLRQLKRFNVGE-DCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCEASGF 158 (499)
Q Consensus 82 ~~L~~~~~~~~~~~~~~l~~f~l~~-Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~~~--iAin~~GG~HHA~~~~AsGF 158 (499)
++|++.++. ...+.++. |||+++++|+++++++||+|.||+++++|+++ +|+||||| |||++++++||
T Consensus 82 ~~l~~~~~~--------~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GF 152 (369)
T 1zz1_A 82 ENMKRVSNL--------PTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGF 152 (369)
T ss_dssp HHHHHHHHS--------TTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTT
T ss_pred HHHHHhCcc--------ccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCc
Confidence 999876431 02345777 99999999999999999999999999999866 56899999 99999999999
Q ss_pred eeechHHHHHHHHHhcC--CcEEEEEccccCCccchhccccCCCEEEeecCCCCCCCC-CCCCCccccCCCCCceeeccC
Q 010858 159 CYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFP-GTGDIRDIGYSKGKFYSLNVP 235 (499)
Q Consensus 159 Cy~NdiaiAi~~Llk~~--~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g~ffP-gTG~~~eiG~g~G~g~~vNVP 235 (499)
||||||||||++|++++ +||+|||||||||||||++||+|++|||+|+|+++ ||| +||..+++|.|+|++|++|||
T Consensus 153 C~fNnvAiAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~-~yP~~tG~~~e~G~g~g~g~~vNvP 231 (369)
T 1zz1_A 153 CIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL-CFPPDSGYSTERGAGNGHGYNINVP 231 (369)
T ss_dssp BSSCHHHHHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT-SSSTTCCCTTCCCCGGGTTCEEEEE
T ss_pred hHhhHHHHHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC-CCCCCCCcccccCCCCCCceEEeee
Confidence 99999999999999874 89999999999999999999999999999999996 999 999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh-----cCCCEEEEeCCC
Q 010858 236 LDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGG 310 (499)
Q Consensus 236 L~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~-----~~~pll~lggGG 310 (499)
||+|++|++|+.+|+++|.|++++|+||+||+|||||+|.+||||.|+||.+||.+++++|++ +++|+++++|||
T Consensus 232 L~~g~~d~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGG 311 (369)
T 1zz1_A 232 LPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGG 311 (369)
T ss_dssp ECTTCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999998875 379999999999
Q ss_pred CCCchhhHHHHHHHHHHcCCCCCCCCCcchhhh
Q 010858 311 YTIRNVARCWCYETGVALGVEVDDKMPQHEYYE 343 (499)
Q Consensus 311 Y~~~~vAr~w~~~t~~llg~~~~~~~P~~~y~~ 343 (499)
|+++++++||++++..|+|.++ ...|..+|++
T Consensus 312 Y~~~~l~~~~~~~~~~l~g~~~-~~~p~~~~~~ 343 (369)
T 1zz1_A 312 YSPHYLPFCGLAVIEELTGVRS-LPDPYHEFLA 343 (369)
T ss_dssp CCTTTHHHHHHHHHHHHHCCCC-CCCTTHHHHH
T ss_pred CCccHHHHHHHHHHHHHhCCCC-CCCchhHHHh
Confidence 9999999999999999999987 6667777765
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=8.2e-86 Score=693.20 Aligned_cols=364 Identities=23% Similarity=0.364 Sum_probs=314.0
Q ss_pred CCCeEEEEEcCCCCCCCCC----CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCch
Q 010858 15 VKRKVCYFYDPEVGNYYYG----QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (499)
Q Consensus 15 ~~~~v~~~yd~~~~~~~~g----~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~ 90 (499)
.+.+|+|+||++|..|..+ ..|||+|.|+++|+++|+++||.+++++++|++||.++|++||+++||++++.....
T Consensus 6 p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~ 85 (413)
T 2vqm_A 6 PRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85 (413)
T ss_dssp CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGG
T ss_pred CCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchh
Confidence 3568999999999999865 459999999999999999999999999999999999999999999999888753211
Q ss_pred hh--H--HH----HHHh-----hhcccCCCCcCCc-chHHHHHHHHHHHHHHHHHHhcCccce--eeecCCCCCCcccCC
Q 010858 91 TQ--Q--DQ----LRQL-----KRFNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCDI--AINWAGGLHHAKKCE 154 (499)
Q Consensus 91 ~~--~--~~----~~~l-----~~f~l~~Dcpvf~-gl~~~~~~saGgsl~aa~~L~~g~~~i--Ain~~GG~HHA~~~~ 154 (499)
.. . .. .... ..+.++.|+++.. ++++++++++|++|.|++++++|+++. |++|||| |||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~ 164 (413)
T 2vqm_A 86 RQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEEST 164 (413)
T ss_dssp GCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTB
T ss_pred hhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCC
Confidence 10 0 00 0000 1123445665544 678999999999999999999998775 5677888 9999999
Q ss_pred CCcceeechHHHHHHHHHhcC--CcEEEEEccccCCccchhccccCCCEEEeecCCC--CCCCCCCCCCccccCCCCCce
Q 010858 155 ASGFCYVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFY 230 (499)
Q Consensus 155 AsGFCy~NdiaiAi~~Llk~~--~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~--g~ffPgTG~~~eiG~g~G~g~ 230 (499)
|+||||||||||||++|++.+ +||||||||||||||||++||++++|||+|+|++ +.||||||..+|+|.|+|++|
T Consensus 165 a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~ 244 (413)
T 2vqm_A 165 PMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244 (413)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTC
T ss_pred CCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCccccc
Confidence 999999999999999998764 8999999999999999999999999999999998 469999999999999999999
Q ss_pred eeccCCCC----CCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCC--CCCCccccCHHhHHHHHHHHHhc-CCCE
Q 010858 231 SLNVPLDD----GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSG--DRLGCFNLSIKGHAECVKFMRSF-NVPL 303 (499)
Q Consensus 231 ~vNVPL~~----G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~g--DpLG~~nLS~~g~~~~~~~l~~~-~~pl 303 (499)
++||||+. |++|++|+.+|+.+|.|++++|+||+||||||||++.+ ||||+|+||.++|++++++|+++ ++|+
T Consensus 245 ~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~ 324 (413)
T 2vqm_A 245 NVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRI 324 (413)
T ss_dssp EEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCE
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 58899999999999999999999999999999999999 66999999999999999999987 8999
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHcCCCCCCCCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccCCC
Q 010858 304 LLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQH 383 (499)
Q Consensus 304 l~lggGGY~~~~vAr~w~~~t~~llg~~~~~~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~ 383 (499)
+++|||||+++++++||++++++|+|.+++. +|. ..+. ..++.|+.++|+++++...+.|+.|+.
T Consensus 325 v~vleGGY~~~~l~~~~~~~~~~l~g~~~~~-~p~----------~~~~----~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 325 VLALEGGHDLTAICDASEACVSALLGNELDP-LPE----------KVLQ----QRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTTCCCCC-CCH----------HHHH----CCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred EEEeCcCCChHHHHHHHHHHHHHHcCCCCCC-CCh----------hhhh----cCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999987642 332 2222 345789999999999999999999999
Q ss_pred CCCcccccCCC
Q 010858 384 APSVQFQERPP 394 (499)
Q Consensus 384 ~p~v~~~~~~~ 394 (499)
+|+++++.++.
T Consensus 390 ~~~~~~~~~~~ 400 (413)
T 2vqm_A 390 TTSTAGRSLIE 400 (413)
T ss_dssp CCCCTTSCHHH
T ss_pred chhhcCcCcch
Confidence 99999987654
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.7e-83 Score=657.55 Aligned_cols=305 Identities=20% Similarity=0.331 Sum_probs=280.7
Q ss_pred EEEEcCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCchh
Q 010858 20 CYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPET 91 (499)
Q Consensus 20 ~~~yd~~~~~~~~g~--------~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~~ 91 (499)
-+||||++..|..+. .|||+|+|+++|+++|+++||. ++++|++|+.++|++|||++||++|++.++++
T Consensus 2 ~~v~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl~---~~~~p~~at~e~L~~vHs~~Yi~~l~~~~~~~ 78 (341)
T 3q9b_A 2 RVIFSEDHKLRNAKTELYGGELVPPFEAPFRAEWILAAVKEAGFD---DVVAPARHGLETVLKVHDAGYLNFLETAWDRW 78 (341)
T ss_dssp EEECCGGGGGCCCSCEEETTEEECCSSCTHHHHHHHHHHHHTTCC---CEECCCCCCSTTGGGTSCHHHHHHHHHHHHHH
T ss_pred EEEECcHHhccCCcccccCCCcCCCCCChHHHHHHHHHHHhCCCC---ceeCCCCCCHHHHHHhCCHHHHHHHHHhhhhh
Confidence 368999999998865 6999999999999999999985 58899999999999999999999999865432
Q ss_pred hH-----------------------HHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCc-cceeeecCCCC
Q 010858 92 QQ-----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGL 147 (499)
Q Consensus 92 ~~-----------------------~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~-~~iAin~~GG~ 147 (499)
.. ........|+++.|||+++++|++|+++||++|.||+++++|+ ..+|++||||
T Consensus 79 ~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~g~~~~d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG- 157 (341)
T 3q9b_A 79 KAAGYKGEAIATSFPVRRTSPRIPTDIEGQIGYYCNAAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG- 157 (341)
T ss_dssp HHTTCSSCBCCCBCCCTTCCCCCCSSHHHHHHHTBSBTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-
T ss_pred hhcccccccccccccccccccccccchhcccceeccCCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-
Confidence 11 0011245688899999999999999999999999999999995 5688999999
Q ss_pred CCcccCCCCcceeechHHHHHHHHHhc-CCcEEEEEccccCCccchhccccCCCEEEeecCCCC-CCCCC-CCCCccccC
Q 010858 148 HHAKKCEASGFCYVNDIVLAILELLKQ-HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPG-TGDIRDIGY 224 (499)
Q Consensus 148 HHA~~~~AsGFCy~NdiaiAi~~Llk~-~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPg-TG~~~eiG~ 224 (499)
|||++++++||||||||||||++|+++ .+||+|||||||||||||++||+|++|||+|+|+++ .|||+ ||..+|+|.
T Consensus 158 HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~ 237 (341)
T 3q9b_A 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGK 237 (341)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCC
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEecCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCC
Confidence 999999999999999999999999997 699999999999999999999999999999999994 69999 999999999
Q ss_pred CCCCceeeccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEE
Q 010858 225 SKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLL 304 (499)
Q Consensus 225 g~G~g~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll 304 (499)
|+|++|++|||||+|++|++|+.+|+.++ +++++|+||+||+|||||++.+||||+|+||.+||.+|+++|+++++|++
T Consensus 238 g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v 316 (341)
T 3q9b_A 238 GAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAFGAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLL 316 (341)
T ss_dssp GGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHHTCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEE
T ss_pred CCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhhCCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999976 57899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHcC
Q 010858 305 LLGGGGYTIRNVARCWCYETGVALG 329 (499)
Q Consensus 305 ~lggGGY~~~~vAr~w~~~t~~llg 329 (499)
+++||||+++++++|+......+.|
T Consensus 317 ~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 317 VVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp EEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred EEECCCCChHHHHHHHHHHHHHhcC
Confidence 9999999999999999988876643
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=1.3e-82 Score=656.18 Aligned_cols=306 Identities=24% Similarity=0.390 Sum_probs=282.3
Q ss_pred EEEEEcCCCCCCCCCC--------CCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcCch
Q 010858 19 VCYFYDPEVGNYYYGQ--------GHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE 90 (499)
Q Consensus 19 v~~~yd~~~~~~~~g~--------~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~~~ 90 (499)
..+||||++..|..+. .|||+|.|+++|+++|+++|| ++++|++|+.++|++|||++||++|++.+++
T Consensus 22 M~~~~~~~~~~H~~~~~~~~G~~~~HPE~P~Rl~~i~~~L~~~gl----~~~~p~~At~e~L~~vHs~~YI~~l~~~~~~ 97 (362)
T 3men_A 22 MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGF----PVREPDDFGIAPIAAVHDTHYLRFLETVHRE 97 (362)
T ss_dssp CEEECCGGGGGCCCCCEEETTEEECCCSCTHHHHHHHHHHHHTTC----CEECCCCCCSHHHHTTSCHHHHHHHHHHHHH
T ss_pred eEEEEChHHHhhCCccccccCCcCCCCCChHHHHHHHHHHHhCCC----eEeCCCCCCHHHHHHhCCHHHHHHHHHhhhh
Confidence 4589999999999875 799999999999999999997 6899999999999999999999999876532
Q ss_pred hhH----------------------HHHHHhhhcccCCCCcCCcchHHHHHHHHHHHHHHHHHHhcCc-cceeeecCCCC
Q 010858 91 TQQ----------------------DQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL-CDIAINWAGGL 147 (499)
Q Consensus 91 ~~~----------------------~~~~~l~~f~l~~Dcpvf~gl~~~~~~saGgsl~aa~~L~~g~-~~iAin~~GG~ 147 (499)
+.. ........+.++.|||+++++|++|++++|++|.||++|++|+ ..+|++||||
T Consensus 98 ~~~~~~~~~~e~~p~~~p~~~~~p~~~~~~~g~~~~d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG- 176 (362)
T 3men_A 98 WKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG- 176 (362)
T ss_dssp HHTSCGGGCSSBCCCBCCCSSCCCCSHHHHHHHHBCBTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred hhhcccccccccccccccccccccccccccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-
Confidence 211 0011234567889999999999999999999999999999995 5688999999
Q ss_pred CCcccCCCCcceeechHHHHHHHHHhcCCcEEEEEccccCCccchhccccCCCEEEeecCCCC-CCCCC-CCCCccccCC
Q 010858 148 HHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPG-TGDIRDIGYS 225 (499)
Q Consensus 148 HHA~~~~AsGFCy~NdiaiAi~~Llk~~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~g-~ffPg-TG~~~eiG~g 225 (499)
|||++++++||||||||||||++|+++++||+|||||||||||||++||+|++|||+|||+++ .|||+ ||..+|+|.|
T Consensus 177 HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g 256 (362)
T 3men_A 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAG 256 (362)
T ss_dssp TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSG
T ss_pred CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeCcCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999994 69999 9999999999
Q ss_pred CCCceeeccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEE
Q 010858 226 KGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLL 305 (499)
Q Consensus 226 ~G~g~~vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~ 305 (499)
+|++|++|||||+|++|++|+.+|+.++ +++++|+||+||||||||++.+||||+|+||.+||.+|+++|+++++|+++
T Consensus 257 ~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~ 335 (362)
T 3men_A 257 EGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVI 335 (362)
T ss_dssp GGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHCCSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcCCCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEE
Confidence 9999999999999999999999999976 678999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCchhhHHHHHHHHHHcCC
Q 010858 306 LGGGGYTIRNVARCWCYETGVALGV 330 (499)
Q Consensus 306 lggGGY~~~~vAr~w~~~t~~llg~ 330 (499)
++||||++.++++|+......+.|.
T Consensus 336 vleGGY~~~~l~~~~~a~l~~l~~~ 360 (362)
T 3men_A 336 VQEGGYHIESLEANARSFFGGFGAL 360 (362)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888763
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=7.5e-82 Score=659.92 Aligned_cols=353 Identities=24% Similarity=0.374 Sum_probs=302.0
Q ss_pred CCeEEEEEcCCCCCCC----CCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccchHHHHHHHHhcC--c
Q 010858 16 KRKVCYFYDPEVGNYY----YGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSIT--P 89 (499)
Q Consensus 16 ~~~v~~~yd~~~~~~~----~g~~HP~~P~R~~~i~~ll~~~gL~~~~~i~~p~~As~eeL~~~Hs~eYv~~L~~~~--~ 89 (499)
..+++|+||++|..|. .+..|||+|.|+++|+++|+++||++++++++|++||.+||++||+++||+.+.... .
T Consensus 35 ~~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~ 114 (421)
T 2pqp_A 35 PFTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSR 114 (421)
T ss_dssp TTCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCS
T ss_pred CCeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhh
Confidence 3579999999999998 688999999999999999999999999999999999999999999999998654311 0
Q ss_pred -hhhHH-HHHHh-hh---------cccCCCCcCCc-chHHHHHHHHHHHHHHHHHHhcCccc--eeeecCCCCCCcccCC
Q 010858 90 -ETQQD-QLRQL-KR---------FNVGEDCPVFD-GLFSFCQTYAGGSVGGAVKLNHGLCD--IAINWAGGLHHAKKCE 154 (499)
Q Consensus 90 -~~~~~-~~~~l-~~---------f~l~~Dcpvf~-gl~~~~~~saGgsl~aa~~L~~g~~~--iAin~~GG~HHA~~~~ 154 (499)
+.... ....+ .+ .+++.|++++. +.|+++++++|++|.|++++++|+++ +|++|||| |||++++
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~ 193 (421)
T 2pqp_A 115 LKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHST 193 (421)
T ss_dssp CCCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTB
T ss_pred hhhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCC
Confidence 00000 00000 11 13455777764 88999999999999999999999765 77889999 9999999
Q ss_pred CCcceeechHHHHHHHHHhc--CCcEEEEEccccCCccchhccccCCCEEEeecCCC--CCCCCCCCCCccccCCCCCce
Q 010858 155 ASGFCYVNDIVLAILELLKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFY 230 (499)
Q Consensus 155 AsGFCy~NdiaiAi~~Llk~--~~RVl~IDiDvHHGDGtqeaF~~d~rVltiS~H~~--g~ffPgTG~~~eiG~g~G~g~ 230 (499)
++||||||||||||++|+++ .+||+|||||||||||||++||+|++|||||+|++ +.||||||..+++|.|.|+||
T Consensus 194 a~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~ 273 (421)
T 2pqp_A 194 AMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGF 273 (421)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTC
T ss_pred CCcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccc
Confidence 99999999999999999986 48999999999999999999999999999999998 469999999999999999999
Q ss_pred eeccCCCCC----CChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCC--CCCccccCHHhHHHHHHHHHhc-CCCE
Q 010858 231 SLNVPLDDG----IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGD--RLGCFNLSIKGHAECVKFMRSF-NVPL 303 (499)
Q Consensus 231 ~vNVPL~~G----~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gD--pLG~~nLS~~g~~~~~~~l~~~-~~pl 303 (499)
++||||+.| ++|++|+.+|+.+|.|++++|+||+||||||||++.+| |||+++||.++|+++++.|+.+ ++|+
T Consensus 274 ~vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grv 353 (421)
T 2pqp_A 274 NVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAV 353 (421)
T ss_dssp EEEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCE
T ss_pred eeccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCE
Confidence 999999755 78999999999999999999999999999999999998 9999999999999999999887 8899
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHcCCCCCCCCCcchhhhccCCCcccccCCCCCCCcCcHHHHHHHHHHHHHHhccCCC
Q 010858 304 LLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQH 383 (499)
Q Consensus 304 l~lggGGY~~~~vAr~w~~~t~~llg~~~~~~~P~~~y~~~~~p~~~l~~~~~~~~~~n~~~~le~i~~~~~~~l~~l~~ 383 (499)
++++||||++.++++||+.++..|+|.+++. +|.. . ....++.+..+.|++++....+.|+-|+.
T Consensus 354 v~vlEGGY~l~~l~~~~~a~~~~L~g~~~~~-l~~~----------~----~~~~p~~~a~~~i~~v~~~~~~yW~~l~~ 418 (421)
T 2pqp_A 354 VLALEGGHDLTAICDASEACVAALLGNRVDP-LSEE----------G----WKQKPNLNAIRSLEAVIRVHSKYWGCMQR 418 (421)
T ss_dssp EEEECSCCCHHHHHHHHHHHHHHHTTCCCCG-GGCG----------G----GGSCCCHHHHHHHHHHHHHHTTTCGGGCC
T ss_pred EEEECCCCChHHHHHHHHHHHHHHcCCCCCC-Cccc----------c----cccccCHHHHHHHHHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999976532 2220 0 01234556677788887777777776654
Q ss_pred C
Q 010858 384 A 384 (499)
Q Consensus 384 ~ 384 (499)
.
T Consensus 419 ~ 419 (421)
T 2pqp_A 419 L 419 (421)
T ss_dssp -
T ss_pred h
Confidence 3
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=79.86 E-value=1.9 Score=39.29 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=32.4
Q ss_pred HhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEE
Q 010858 257 MEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 257 ~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~l 306 (499)
+-.++||+|||.+|. |...+-+........+.+..+++.++..+.+++++
T Consensus 74 v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 74 VINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp TGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 345899999999997 44333222233334456667777777777777665
No 11
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=65.72 E-value=2 Score=35.85 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=47.6
Q ss_pred HHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh-----HHHHHHHHHhcCCCEEEE
Q 010858 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG-----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 250 ~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g-----~~~~~~~l~~~~~pll~l 306 (499)
+++|..++.+|+.++=|++++.|...+.++|.+-+...| ..+.+++|++.++.+=++
T Consensus 34 ~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 34 EPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 588889999999999999999999999999998875544 566788888888766555
No 12
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=62.71 E-value=18 Score=32.47 Aligned_cols=60 Identities=12% Similarity=0.235 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHhHHhh-cCCcEEEEecCCCCCCCCCCCccccCHHhH----HHHHHHHHhcCCCEEEEe
Q 010858 242 DESYHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLLG 307 (499)
Q Consensus 242 D~~y~~~f~~iv~pv~~~-f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~----~~~~~~l~~~~~pll~lg 307 (499)
-...+..+.. ++.. .+||+|||..|..=.... +....+.+.| .++++.+++.+.+++++.
T Consensus 56 ~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 120 (240)
T 3mil_A 56 SRWALKILPE----ILKHESNIVMATIFLGANDACSA--GPQSVPLPEFIDNIRQMVSLMKSYHIRPIIIG 120 (240)
T ss_dssp HHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSS--STTCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHH----HhcccCCCCEEEEEeecCcCCcc--CCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 3445554443 3333 799999999997333211 1223444444 456667777777766664
No 13
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=62.32 E-value=16 Score=32.00 Aligned_cols=46 Identities=13% Similarity=0.220 Sum_probs=29.8
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHH----hHHHHHHHHHhcCCCEEEE
Q 010858 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~----g~~~~~~~l~~~~~pll~l 306 (499)
..+..++||+|||+.|..=.. . ..+.+ .+.++++.++..+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~----~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGL----R--GFQPQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTS----S--SCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeeccccc----c--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 445568999999999964332 1 23344 4455667777777776665
No 14
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=61.14 E-value=21 Score=31.62 Aligned_cols=57 Identities=9% Similarity=0.134 Sum_probs=33.8
Q ss_pred eccCCCCCCChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhH----HHHHHHHHhcC
Q 010858 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFN 300 (499)
Q Consensus 232 vNVPL~~G~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~----~~~~~~l~~~~ 300 (499)
.|.....+.+....+..++ ..+...+||+||+.+|.. |. ..+.+.| .++++.+++.+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~----~~~~~~~pd~Vvi~~G~N----D~----~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 49 GRLSNSKSVGDPALIEELA----VVLKNTKFDVIHFNNGLH----GF----DYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEESCCTTCHHHHHHHH----HHHHHSCCSEEEECCCSS----CT----TSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEeccCCccHHHHHHHHH----HHHhcCCCCeEEEEeeeC----CC----CCCHHHHHHHHHHHHHHHhhhC
Confidence 3433344455555555444 345568999999999975 32 2455544 45666666653
No 15
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=58.82 E-value=9.9 Score=33.45 Aligned_cols=50 Identities=10% Similarity=0.280 Sum_probs=30.1
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEEe
Q 010858 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLLG 307 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~lg 307 (499)
..+..++||+|||..|..=..... ...+.+. +.++++.+++.+.+++++.
T Consensus 68 ~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 68 QDVINLKPKAVVILAGINDIAHNN---GVIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp HHTGGGCEEEEEEECCHHHHTTTT---SCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHhCCCCEEEEEeecCcccccc---CCCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 334558999999999974332211 1134444 4456667777677776663
No 16
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=56.80 E-value=13 Score=34.06 Aligned_cols=48 Identities=21% Similarity=0.318 Sum_probs=28.6
Q ss_pred HHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEEe
Q 010858 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (499)
Q Consensus 256 v~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~lg 307 (499)
++..++||+|||..|..=.. ....-..+.+.++++.+++. +.+++++.
T Consensus 88 ~l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 88 ELEHIRPKIVVVWVGTNNHG----HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp TTTTCCCSEEEEECCTTCTT----SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred ccccCCCCEEEEEeecCCCC----CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 34568999999999974332 11111233455566667665 55666653
No 17
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=52.61 E-value=25 Score=30.32 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=28.1
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHH----HHHHHHhcCCCEEEEe
Q 010858 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLG 307 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~----~~~~l~~~~~pll~lg 307 (499)
..+...+||+|||+.|..=... ....+.+.|.+ +++.++ +.+++++.
T Consensus 61 ~~~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~--~~~vi~~~ 111 (195)
T 1yzf_A 61 KEVLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIG--SEKVILIT 111 (195)
T ss_dssp HHTGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHC--GGGEEEEC
T ss_pred HhhhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 3345589999999999754431 12445555554 444444 56666664
No 18
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=51.77 E-value=3.1 Score=34.50 Aligned_cols=56 Identities=14% Similarity=0.345 Sum_probs=46.0
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEE
Q 010858 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~l 306 (499)
++|..++.+|+-++=|++++.|...+.++|.+-+...| ..+.+.+|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 38 PIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp CHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred hHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 67888899999999999999999999999998776544 566778888887755443
No 19
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=51.47 E-value=15 Score=31.80 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=29.4
Q ss_pred hHHhhcCCcEEEEecCCC-CCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEE
Q 010858 255 KVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~D-sl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~l 306 (499)
..+..++||+|||+.|.. ...+-+ ..-..+.+.++++.+++.+.+++++
T Consensus 60 ~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 60 ALLEQYEPTHVLIELGANDGLRGFP---VKKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp HHHHHHCCSEEEEECCHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhcCCCEEEEEeecccCCCCcC---HHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 345568999999999963 222111 1112334455677777777777665
No 20
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=51.18 E-value=12 Score=33.94 Aligned_cols=56 Identities=20% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEE
Q 010858 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~l 306 (499)
..++..+.. .+..++||+|||+.|..=.. .....+.+.+.++++.+++. +.+++++
T Consensus 69 ~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 69 PQIASNINN----WLNTHNPDVVFLWIGGNDLL----LNGNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp HHHHHHHHH----HHHHHCCSEEEEECCHHHHH----HHCCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHH----HhhccCCCEEEEEccccccC----CCCChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 444444433 34468999999999964221 11234567888899988876 5566555
No 21
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=50.95 E-value=15 Score=37.93 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=44.8
Q ss_pred cCCCCCCCh-HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 010858 234 VPLDDGIDD-ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (499)
Q Consensus 234 VPL~~G~~D-~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY 311 (499)
|||-..+.. .++...|++.+ |-+.+|+-..|||-.|-.++..+- .....+-+..++..+.++++|-|||-
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 15 VPRGSHMNAPDSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp ----------CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CcCcccCCchhHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 344333443 56888998865 678999999999999988876421 33445555556666777887877873
No 22
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=50.65 E-value=16 Score=34.45 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCC-CCCCCCCCCcc
Q 010858 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCF 282 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~ 282 (499)
..+..+..++.. ...+||+|+|..|. |...+.+++.+
T Consensus 73 ~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 73 DVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp GHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 355555553321 23789999999998 55555566543
No 23
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=47.93 E-value=25 Score=31.14 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=31.0
Q ss_pred hHHhhcCC-cEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcC---------CCEEEEe
Q 010858 255 KVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFN---------VPLLLLG 307 (499)
Q Consensus 255 pv~~~f~P-dlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~---------~pll~lg 307 (499)
..+..++| |+|||+.|.. |-...+..+.+. +.++++.+++.+ .+++++.
T Consensus 76 ~~l~~~~p~d~vvi~~G~N----D~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~P~~~iil~~ 138 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTN----DTKAYFRRTPLDIALGMSVLVTQVLTSAGGVGTTYPAPKVLVVS 138 (216)
T ss_dssp HHHHHHCSCSEEEEECCTG----GGSGGGCCCHHHHHHHHHHHHHHHHTCTTTTTBCCCCCEEEEEE
T ss_pred HHHHhCCCCCEEEEEecCc----ccchhcCCCHHHHHHHHHHHHHHHHHhcccccccCCCCeEEEEe
Confidence 44556788 9999999974 322223445544 445667777766 6676663
No 24
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=44.52 E-value=6.2 Score=33.13 Aligned_cols=56 Identities=14% Similarity=0.379 Sum_probs=46.0
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEE
Q 010858 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~l 306 (499)
++|..++++|+-++=|++++.|...+.++|.+-+...| ..+.+++|++.++.+=++
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 95 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVL 95 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEe
Confidence 57888899999999999999999999999998775543 556778888887765444
No 25
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=44.09 E-value=6.9 Score=34.56 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=29.6
Q ss_pred hHHhhcCCcEEEEecCCC-CCCCCCCC---ccccCHHhHH----HHHHHHHhcCCCEEEEe
Q 010858 255 KVMEVFRPGAVVLQCGAD-SLSGDRLG---CFNLSIKGHA----ECVKFMRSFNVPLLLLG 307 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~D-sl~gDpLG---~~nLS~~g~~----~~~~~l~~~~~pll~lg 307 (499)
..+...+||+|||+.|.. ...+.+.+ ....+.+.|. ++++.+++.+.+++++.
T Consensus 77 ~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~~ 137 (216)
T 3rjt_A 77 DDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLS 137 (216)
T ss_dssp HHTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEEC
T ss_pred hHHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 334567999999999963 22110000 0133444444 45666666677777663
No 26
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=43.84 E-value=38 Score=30.85 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=30.3
Q ss_pred HhHHhhcCC-cEEEEecCCCCCCCCCCCccccCHHhHH----HHHHHHHhc-------CCCEEEE
Q 010858 254 GKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSF-------NVPLLLL 306 (499)
Q Consensus 254 ~pv~~~f~P-dlIVvqaG~Dsl~gDpLG~~nLS~~g~~----~~~~~l~~~-------~~pll~l 306 (499)
...+..++| |+|||..|.. |-...+..+.+.|. ++++.+++. +.+++++
T Consensus 93 ~~~l~~~~p~d~VvI~~GtN----D~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~ 153 (232)
T 3dci_A 93 EVALSCHMPLDLVIIMLGTN----DIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIV 153 (232)
T ss_dssp HHHHHHHCSCSEEEEECCTT----TTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEE
T ss_pred HHHHhhCCCCCEEEEEeccC----CCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEE
Confidence 345567899 9999999964 43333334555444 566666664 3455555
No 27
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=42.52 E-value=5.7 Score=32.89 Aligned_cols=56 Identities=18% Similarity=0.427 Sum_probs=46.1
Q ss_pred HHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEE
Q 010858 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~l 306 (499)
++|..++.+|+-++=|++++.|...+.++|.+-+...| ..+.+++|++.++.+=++
T Consensus 38 pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 38 PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 67888999999999999999999999999998775543 456778888887765444
No 28
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=41.24 E-value=64 Score=28.65 Aligned_cols=51 Identities=12% Similarity=0.200 Sum_probs=30.1
Q ss_pred HHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeC
Q 010858 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 249 f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lgg 308 (499)
++.++. .+.+.+||+||+ +| |.. ......+.+.++.+.+++.+.|++++.|
T Consensus 21 ~~~~~~-~~~~~~~D~vi~-~G-Dl~------~~~~~~~~~~~~~~~l~~~~~pv~~v~G 71 (228)
T 1uf3_A 21 LEKFVK-LAPDTGADAIAL-IG-NLM------PKAAKSRDYAAFFRILSEAHLPTAYVPG 71 (228)
T ss_dssp HHHHHT-HHHHHTCSEEEE-ES-CSS------CTTCCHHHHHHHHHHHGGGCSCEEEECC
T ss_pred HHHHHH-HHhhcCCCEEEE-CC-CCC------CCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 444443 344558998765 33 322 1112345666788888888889877754
No 29
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=41.12 E-value=57 Score=31.93 Aligned_cols=63 Identities=16% Similarity=0.340 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 010858 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (499)
..+...|++.+ |-+.+|+=..|||-.|-.++.... ....+.+-+..++..+.++++|.|||-.
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 70 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHH
Confidence 36778888765 667889989999999998886531 1223344445566678888888888754
No 30
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=39.41 E-value=32 Score=31.35 Aligned_cols=42 Identities=17% Similarity=0.394 Sum_probs=27.5
Q ss_pred HhhcCCcEEEEecCCCCCCCCCCCccccCHH----hHHHHHHHHHhc--CCCEEEE
Q 010858 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSF--NVPLLLL 306 (499)
Q Consensus 257 ~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~----g~~~~~~~l~~~--~~pll~l 306 (499)
+..++||+|||..|..=. | .+.+ .+.++++.+++. +.+++++
T Consensus 90 l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 137 (229)
T 1fxw_F 90 LENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIVL 137 (229)
T ss_dssp TSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 456899999999997544 2 3444 345566666654 5566665
No 31
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=38.78 E-value=30 Score=34.99 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=31.2
Q ss_pred HHhHHhhcCC-cEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEE
Q 010858 253 IGKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLL 306 (499)
Q Consensus 253 v~pv~~~f~P-dlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~l 306 (499)
+.+++..++| |+|||+.|..=.. .....+.+. +.++++.+++.+.+++++
T Consensus 221 l~~~l~~~~p~d~VvI~~G~ND~~----~~~~~~~~~~~~~l~~ii~~lr~~~a~vilv 275 (375)
T 2o14_A 221 LEAILKYIKPGDYFMLQLGINDTN----PKHKESEAEFKEVMRDMIRQVKAKGADVILS 275 (375)
T ss_dssp HHHHHTTCCTTCEEEEECCTGGGC----GGGCCCHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhCCCCCEEEEEEEccCCC----ccCCCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3455677899 9999999974222 112234444 455667777767666655
No 32
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=36.84 E-value=61 Score=31.62 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCC-CCCCCCCCccccCHHhHHHHHHHHHhcC--CCEEEEeC
Q 010858 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKGHAECVKFMRSFN--VPLLLLGG 308 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~D-sl~gDpLG~~nLS~~g~~~~~~~l~~~~--~pll~lgg 308 (499)
++...+|+.++.. +.+.+||+||+ +| | .. -....+......+.++++.+. +|++++.|
T Consensus 44 ~~~~~~l~~lv~~-~~~~~~D~vli-aG-D~l~-----d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVEE-AEKREVDLILL-TG-DLLH-----SRNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSEEEE-ES-CSBS-----CSSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHHH-HHHhCCCEEEE-CC-cccc-----CCCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 4566778777754 56679998776 44 4 22 112233343334445554443 88877654
No 33
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=36.83 E-value=63 Score=32.45 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc---CCCEEEEeC
Q 010858 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGG 308 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~---~~pll~lgg 308 (499)
+...+|+.++.. +.+-+||+||+ || |.. ....-+...+..+.+.|+.+ ++|++++.|
T Consensus 44 ~~~~~l~~~v~~-~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 44 DIYDSFKLCIKK-ILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHH-HHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 456778777754 45679999877 33 322 22223344444555555444 789877755
No 34
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=35.49 E-value=34 Score=33.46 Aligned_cols=66 Identities=15% Similarity=0.326 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 010858 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (499)
Q Consensus 240 ~~D~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (499)
+....+...|++.+ |-+.+|+-..||+-.|-.++... + ..+.+.+.+..++..+.++++|.|||-.
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~~ 69 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDD-----T-LRRAFAADMAFLRNCGIHPVVVHGGGPQ 69 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSH-----H-HHHHHHHHHHHHHTTTCEEEEEECCSHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCc-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 44577888888865 67889999999999996665432 0 1223344445555667778878777654
No 35
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=32.10 E-value=1.2e+02 Score=29.54 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHH---HHHHHHhcCCCEEEEeC
Q 010858 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE---CVKFMRSFNVPLLLLGG 308 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~---~~~~l~~~~~pll~lgg 308 (499)
+++..+|+.++. .+.+.+||+||+ +| |... ..+-+.+.+.. .++.++..++|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~-~G-Dl~d-----~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILI-AG-DLFH-----SSRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEE-ES-CSBS-----SSSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC-CcCC-----CCCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 356677777775 456789998776 33 3322 11223333343 44444555789887765
No 36
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=30.97 E-value=42 Score=34.32 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=32.3
Q ss_pred HhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEEe
Q 010858 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (499)
Q Consensus 254 ~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~lg 307 (499)
..++..++||+|||.+|..=...+ + ...--.+.+.++++.+++. +.||+++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~-~-~~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDG-D-GFVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTT-C-CTTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCC-C-CHHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344566799999999997543322 0 1112234566778888775 56777764
No 37
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=29.90 E-value=1e+02 Score=28.28 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=15.2
Q ss_pred HHhHHhhcCC-cEEEEecCCCC
Q 010858 253 IGKVMEVFRP-GAVVLQCGADS 273 (499)
Q Consensus 253 v~pv~~~f~P-dlIVvqaG~Ds 273 (499)
+..++...+| |+|||+.|..=
T Consensus 54 ~~~~l~~~~~~d~ViI~~G~ND 75 (233)
T 1k7c_A 54 FENIADVVTAGDYVIVEFGHND 75 (233)
T ss_dssp HHHHHHHCCTTCEEEECCCTTS
T ss_pred HHHHHhhCCCCCEEEEEccCCC
Confidence 3455555666 99999999843
No 38
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=29.11 E-value=68 Score=34.15 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=37.2
Q ss_pred HHHHHHHhHHhhcCCcEEEEecC-CCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 010858 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (499)
Q Consensus 248 ~f~~iv~pv~~~f~PdlIVvqaG-~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~~~ 314 (499)
.++..|..+.+.|+|++|+|... .-.+.||.+.. +++.++. ++||+.+--.||...
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~----------v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPNG----------ISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHHH----------HHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHHH----------HHHHhcC-CCCEEEEECCCcCCc
Confidence 34456667788899997766655 66677775432 3333333 788888887888764
No 39
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=27.36 E-value=61 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhHHhhcCCcEEEEecCCCCCC
Q 010858 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLS 275 (499)
Q Consensus 245 y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~ 275 (499)
+...+...|..++++++|++||.-.|.|.|.
T Consensus 132 ~~~~l~~~l~~~ir~~~PdvV~t~~~~d~Hp 162 (273)
T 3dff_A 132 LVGEVADDIRSIIDEFDPTLVVTCAAIGEHP 162 (273)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEECCCCCCCh
Confidence 4555556677899999999999987766553
No 40
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=26.29 E-value=69 Score=30.93 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhHHhhcCCcEEEEecCCCCCC
Q 010858 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLS 275 (499)
Q Consensus 245 y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~ 275 (499)
+...+...|..++++++|++||.-.|.|.|.
T Consensus 129 ~~~~~~~~l~~~ir~~~PdvV~t~~~~d~Hp 159 (270)
T 3dfi_A 129 LVAAIREDIESMIAECDPTLVLTCVAIGKHP 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEECCTTCCH
T ss_pred hHHHHHHHHHHHHHHcCCCEEEeCCCCCCCh
Confidence 4445556677889999999999987766654
No 41
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=25.94 E-value=39 Score=30.54 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=30.7
Q ss_pred cCCcEEEEecCC-CCCCCCCCCcccc-CH----HhHHHHHHHHHhc--CCCEEEEe
Q 010858 260 FRPGAVVLQCGA-DSLSGDRLGCFNL-SI----KGHAECVKFMRSF--NVPLLLLG 307 (499)
Q Consensus 260 f~PdlIVvqaG~-Dsl~gDpLG~~nL-S~----~g~~~~~~~l~~~--~~pll~lg 307 (499)
.+||+|||..|. |...+-+++.+.- +. ..+.++++.++.. +.+++++.
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~~ 136 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFIS 136 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 499999999997 3444445554321 11 2556677777765 67887753
No 42
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=25.91 E-value=34 Score=33.51 Aligned_cols=63 Identities=13% Similarity=0.278 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 010858 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (499)
..+...|++.+ |-+.+|+-..||+-.|--++... + ..+.+.+-+..+++.+.++++|.|||-.
T Consensus 18 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vViVhGgG~~ 80 (298)
T 2rd5_A 18 DYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSP-----E-LKSSVVSDLVLLACVGLRPILVHGGGPD 80 (298)
T ss_dssp CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCH-----H-HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred HHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCCEEEEECCcHH
Confidence 46888888865 66889999999999996665431 0 1123334444556667788888887643
No 43
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=25.55 E-value=61 Score=28.92 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHhHHhhcCCcEEEEecC
Q 010858 252 IIGKVMEVFRPGAVVLQCG 270 (499)
Q Consensus 252 iv~pv~~~f~PdlIVvqaG 270 (499)
.|..++++.+||+|.+|=-
T Consensus 35 ~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 35 AVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp HHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEec
Confidence 3556788899999999964
No 44
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=24.79 E-value=49 Score=29.52 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=26.8
Q ss_pred hcCCcEEEEecCCCCCCCCCCCccccCHHh----HHHHHHHHHhcCCCEEEEe
Q 010858 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLLLLG 307 (499)
Q Consensus 259 ~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g----~~~~~~~l~~~~~pll~lg 307 (499)
..+||+|||+.|..=... ..+....+.+. +.++++.+++. .+++++.
T Consensus 86 ~~~pd~vvi~~G~ND~~~-~~~~~~~~~~~~~~~l~~li~~l~~~-~~iil~~ 136 (218)
T 1vjg_A 86 KEYNSLVVFSFGLNDTTL-ENGKPRVSIAETIKNTREILTQAKKL-YPVLMIS 136 (218)
T ss_dssp TTSEEEEEEECCHHHHCE-ETTEESSCHHHHHHHHHHHHHHHHHH-SCEEEEC
T ss_pred cCCCCEEEEEecCCcchh-hcccccCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 369999999999632210 00011334444 44566666666 7777763
No 45
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=24.17 E-value=59 Score=31.34 Aligned_cols=62 Identities=13% Similarity=0.293 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 010858 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~pll~lggGGY~ 312 (499)
.+...|++.+ |-+++|+-..||+-.|--++... + ..+.+.+-+..+++.+.++++|.|||-.
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~-----~-~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 65 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQE-----N-AKKAFIQDIILLKYTGIKPIIVHGGGPA 65 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSH-----H-HHHHHHHHHHHHHHTTCEEEEEECCSHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCCh-----h-HHHHHHHHHHHHHHCCCcEEEEECCcHH
Confidence 4667787765 67899998899999996665431 0 1122333444455567778888777754
No 46
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=23.71 E-value=60 Score=29.37 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.6
Q ss_pred HhcCCcEEEEEccccCCc
Q 010858 172 LKQHERVLYVDIDIHHGD 189 (499)
Q Consensus 172 lk~~~RVl~IDiDvHHGD 189 (499)
.+...||++||.|..+|+
T Consensus 28 a~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 28 GDRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HHTTCCEEEEECCTTSCC
T ss_pred HhcCCeEEEEeCCCCCCC
Confidence 345689999999998775
No 47
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.66 E-value=1.1e+02 Score=27.91 Aligned_cols=47 Identities=9% Similarity=0.231 Sum_probs=30.5
Q ss_pred hHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHhcCC---CEEEEeCCCCC
Q 010858 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV---PLLLLGGGGYT 312 (499)
Q Consensus 255 pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~~~~---pll~lggGGY~ 312 (499)
..+++++||+|.+++-.. -+.....+.++.+++.+. ..+++||.+.+
T Consensus 133 ~~~~~~~~d~v~lS~~~~-----------~~~~~~~~~i~~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 133 EAVKKYQPDIVGMSALLT-----------TTMMNMKSTIDALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHHHCCSEEEEECCSG-----------GGTHHHHHHHHHHHHTTCGGGCEEEEESTTCC
T ss_pred HHHHHcCCCEEEEecccc-----------ccHHHHHHHHHHHHhcCCCCCCeEEEECCCCC
Confidence 456778999999998532 134556778888887643 23455555544
No 48
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=23.46 E-value=2.5e+02 Score=26.61 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhHHhhcC--CcEEEEecCCCCCCCCCCCccccC--HHhHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 010858 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~--PdlIVvqaG~Dsl~gDpLG~~nLS--~~g~~~~~~~l~~~~~-pll~lggGGY~~ 313 (499)
.+...+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.|.++++.+|+.+. .+|++++.+|+.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 445566666677778885 444555443 5566543211 3456678888888743 456666666654
No 49
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=23.07 E-value=2.3e+02 Score=28.26 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhHHhhcC--CcEEEEecCCCCCCCCCCCccccC--HHhHHHHHHHHHhcCC-CEEEEeCCCCCC
Q 010858 244 SYHYLFKPIIGKVMEVFR--PGAVVLQCGADSLSGDRLGCFNLS--IKGHAECVKFMRSFNV-PLLLLGGGGYTI 313 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~--PdlIVvqaG~Dsl~gDpLG~~nLS--~~g~~~~~~~l~~~~~-pll~lggGGY~~ 313 (499)
.+...+......++++|+ |+.|++..+ ..|.+.+.-+ .+.+.++++.+|+.+. .+|+++|-+|+-
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 355666666677777774 456666654 5566633211 2344567788888754 467777777775
No 50
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=22.85 E-value=1.3e+02 Score=30.07 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCC-CccccCHHhHHHHH---HHHHhcCCCEEEEeC
Q 010858 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRL-GCFNLSIKGHAECV---KFMRSFNVPLLLLGG 308 (499)
Q Consensus 243 ~~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpL-G~~nLS~~g~~~~~---~~l~~~~~pll~lgg 308 (499)
.++..+|+.++. ++.+.+||+||+ + ||-. -..+.+...+..+. +.|... +|++++.|
T Consensus 26 ~~~~~~l~~l~~-~~~~~~~D~vli-a------GDl~hd~~~~~~~~~~~~~~~l~~l~~~-~~v~~i~G 86 (379)
T 3tho_B 26 EELKKALDKVVE-EAEKREVDLILL-T------GDLLHSRNNPSVVALHDLLDYLKRMMRT-APVVVLPG 86 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHTCSEEEE-C------SCCBSCSSSCCHHHHHHHHHHHHHHHHH-SCEEECCC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-C------CCccccCCCCCHHHHHHHHHHHHHHHhC-CCEEEEcC
Confidence 456777777654 567789999988 3 3432 22233444444444 444444 88877654
No 51
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=22.47 E-value=51 Score=32.38 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=29.3
Q ss_pred hhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHHhc--CCCEEEEe
Q 010858 258 EVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLG 307 (499)
Q Consensus 258 ~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~~~--~~pll~lg 307 (499)
..++||+|||..|. |...+.+ ...--.+.|.++++.+++. +.+++++.
T Consensus 210 ~~~~PdlVvI~lGtND~~~~~~--~~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 210 SKYVPQVVVINLGTNDFSTSFA--DKTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GGCCCSEEEEECCHHHHSSSCC--CHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCCCCCEEEEeCccccCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 36899999999997 3433221 0111235666777777665 45666664
No 52
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=22.22 E-value=80 Score=27.45 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.1
Q ss_pred HHhHHhhcCCcEEEEec
Q 010858 253 IGKVMEVFRPGAVVLQC 269 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqa 269 (499)
|..++++.+||+|.+|=
T Consensus 26 i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 26 LCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 45667889999999995
No 53
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=22.03 E-value=68 Score=29.41 Aligned_cols=19 Identities=16% Similarity=0.342 Sum_probs=15.1
Q ss_pred HHhcCCcEEEEEccccCCc
Q 010858 171 LLKQHERVLYVDIDIHHGD 189 (499)
Q Consensus 171 Llk~~~RVl~IDiDvHHGD 189 (499)
|.+...||++||.|..+|+
T Consensus 27 la~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 27 LAQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp HHHTTCCEEEEECCCSSCC
T ss_pred HHhCCCcEEEEECCCCCCC
Confidence 3345689999999997776
No 54
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=21.44 E-value=90 Score=32.94 Aligned_cols=55 Identities=20% Similarity=0.156 Sum_probs=38.6
Q ss_pred HHHHhHHhhcCCcEEEEecCC-CCCCCCCCCccccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCch
Q 010858 251 PIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRN 315 (499)
Q Consensus 251 ~iv~pv~~~f~PdlIVvqaG~-Dsl~gDpLG~~nLS~~g~~~~~~~l~-~~~~pll~lggGGY~~~~ 315 (499)
..|..+.+.|+|++|+|...+ -...||.+.. +++.++ ..++||+.+--.||....
T Consensus 78 ~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~----------v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 78 DNIIRKDTEEHPDLIVLTPTCTSSILQEDLQN----------FVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHCCSEEEEECCHHHHTTCCCHHH----------HHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHhcCCCEEEEeCCcHHHHhccCHHH----------HHHHhhhccCCCEEEeeCCCcccch
Confidence 445566778999998888765 6667765432 333333 468999999999998744
No 55
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=21.00 E-value=1e+02 Score=29.17 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHHh---cCCCEEEEeCCCCCC
Q 010858 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS---FNVPLLLLGGGGYTI 313 (499)
Q Consensus 261 ~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~~---~~~pll~lggGGY~~ 313 (499)
++..||+-.|--++..+ +...++.+-...+++.+.. .+.++++|.|||-..
T Consensus 11 ~~~~iViKiGGs~l~~~--~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~ 64 (255)
T 2jjx_A 11 PYKRVLIKLSGGALADQ--TGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIF 64 (255)
T ss_dssp BCSEEEEEECGGGTSCS--SSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTC
T ss_pred cCCEEEEEECHHHhCCC--CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHH
Confidence 56889999999988765 4455666666666665543 466777777776543
No 56
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=20.52 E-value=76 Score=29.32 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.2
Q ss_pred hcCCcEEEEEccccCCc
Q 010858 173 KQHERVLYVDIDIHHGD 189 (499)
Q Consensus 173 k~~~RVl~IDiDvHHGD 189 (499)
+...||++||.|...|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 29 QLGHDVTIVDADITMAN 45 (263)
T ss_dssp HTTCCEEEEECCCSSSS
T ss_pred hCCCcEEEEECCCCCCC
Confidence 44689999999998776
No 57
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=20.39 E-value=90 Score=27.71 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=14.0
Q ss_pred HHhHHhhcCCcEEEEec
Q 010858 253 IGKVMEVFRPGAVVLQC 269 (499)
Q Consensus 253 v~pv~~~f~PdlIVvqa 269 (499)
|..++++.+||+|.+|=
T Consensus 32 i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 32 VCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 44667889999999994
No 58
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=20.12 E-value=2e+02 Score=29.92 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhHHhhcCCcEEEEecCCCCCCCCCCCccccCHHhHHHHHHHHH
Q 010858 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMR 297 (499)
Q Consensus 244 ~y~~~f~~iv~pv~~~f~PdlIVvqaG~Dsl~gDpLG~~nLS~~g~~~~~~~l~ 297 (499)
+....|+.++.. +.+.+||+||+ +| |.. -...-+.+....+.+.|+
T Consensus 55 d~~~~l~~ll~~-~~~~~~D~Vli-aG-Dlf-----d~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 55 DTFVTLDEILRL-AQENEVDFILL-GG-DLF-----HENKPSRKTLHTCLELLR 100 (431)
T ss_dssp HHHHHHHHHHHH-HHHTTCSEEEE-CS-CCB-----SSSSCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-HhhcCCCEEEE-cC-ccc-----cCCCCCHHHHHHHHHHHH
Confidence 455677776654 56789999998 33 433 233345566666666665
Done!