BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010860
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AV4|A Chain A, Fimh Lectin Domain Co-Crystal With A Alpha-D-Mannoside
O-Linked To A Propynyl Pyridine
Length = 158
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 12 ITECNGSAYGSIAADLDGTLLVSRSSFPY 40
+T GSAYG + ++ GT+ S SS+P+
Sbjct: 56 VTLQRGSAYGGVLSNFSGTVKYSGSSYPF 84
>pdb|1TR7|B Chain B, Fimh Adhesin Receptor Binding Domain From Uropathogenic
E. Coli
pdb|1TR7|A Chain A, Fimh Adhesin Receptor Binding Domain From Uropathogenic
E. Coli
Length = 164
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 12 ITECNGSAYGSIAADLDGTLLVSRSSFPY 40
+T GSAYG + ++ GT+ S SS+P+
Sbjct: 56 VTLQRGSAYGGVLSNFSGTVKYSGSSYPF 84
>pdb|1UWF|A Chain A, 1.7 A Resolution Structure Of The Receptor Binding
Domain Of The Fimh Adhesin From Uropathogenic E. Coli
pdb|2VCO|A Chain A, Crystal Structure Of The Fimbrial Adhesin Fimh In
Complex With Its High-Mannose Epitope
pdb|2VCO|B Chain B, Crystal Structure Of The Fimbrial Adhesin Fimh In
Complex With Its High-Mannose Epitope
pdb|4AUU|A Chain A, Crystal Structure Of Apo Fimh Lectin Domain At 1.5 A
Resolution
pdb|4AUU|B Chain B, Crystal Structure Of Apo Fimh Lectin Domain At 1.5 A
Resolution
pdb|4AUY|A Chain A, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With An Hydroxyl Propynyl
Phenyl Alpha-D- Mannoside At 2.1 A Resolution
pdb|4AUY|B Chain B, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With An Hydroxyl Propynyl
Phenyl Alpha-D- Mannoside At 2.1 A Resolution
pdb|4AV0|A Chain A, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Methoxy Phenyl Propynyl
Alpha-D- Mannoside At 2.1 A Resolution
pdb|4AV0|B Chain B, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Methoxy Phenyl Propynyl
Alpha-D- Mannoside At 2.1 A Resolution
pdb|4AV5|B Chain B, Structure Of A Triclinic Crystal Of The Fimh Lectin
Domain In Complex With A Propynyl Biphenyl
Alpha-D-Mannoside, At 1.4 A Resolution
pdb|4AV5|D Chain D, Structure Of A Triclinic Crystal Of The Fimh Lectin
Domain In Complex With A Propynyl Biphenyl
Alpha-D-Mannoside, At 1.4 A Resolution
pdb|4AVH|A Chain A, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Thioalkyl
Alpha-D-Mannoside At 2.1 A Resolution
pdb|4AVH|B Chain B, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Thioalkyl
Alpha-D-Mannoside At 2.1 A Resolution
pdb|4AVK|A Chain A, Structure Of Trigonal Fimh Lectin Domain Crystal Soaked
With An Alpha-D-Mannoside O-Linked To Propynyl Pyridine
At 2.4 A Resolution
pdb|4AVK|B Chain B, Structure Of Trigonal Fimh Lectin Domain Crystal Soaked
With An Alpha-D-Mannoside O-Linked To Propynyl Pyridine
At 2.4 A Resolution
pdb|4AVI|A Chain A, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Methyl Ester Octyl
Alpha-D- Mannoside At 2.4 A Resolution
pdb|4AVI|B Chain B, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Methyl Ester Octyl
Alpha-D- Mannoside At 2.4 A Resolution
pdb|4AVJ|A Chain A, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Methanol Triazol Ethyl
Phenyl Alpha-D-Mannoside At 2.1 A Resolution
pdb|4AVJ|B Chain B, Structure Of The Fimh Lectin Domain In The Trigonal
Space Group, In Complex With A Methanol Triazol Ethyl
Phenyl Alpha-D-Mannoside At 2.1 A Resolution
Length = 158
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 12 ITECNGSAYGSIAADLDGTLLVSRSSFPY 40
+T GSAYG + ++ GT+ S SS+P+
Sbjct: 56 VTLQRGSAYGGVLSNFSGTVKYSGSSYPF 84
>pdb|4AV5|A Chain A, Structure Of A Triclinic Crystal Of The Fimh Lectin
Domain In Complex With A Propynyl Biphenyl
Alpha-D-Mannoside, At 1.4 A Resolution
pdb|4AV5|C Chain C, Structure Of A Triclinic Crystal Of The Fimh Lectin
Domain In Complex With A Propynyl Biphenyl
Alpha-D-Mannoside, At 1.4 A Resolution
Length = 158
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 12 ITECNGSAYGSIAADLDGTLLVSRSSFPY 40
+T GSAYG + ++ GT+ S SS+P+
Sbjct: 56 VTLQRGSAYGGVLSNFSGTVKYSGSSYPF 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,416,288
Number of Sequences: 62578
Number of extensions: 509096
Number of successful extensions: 1241
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 8
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)