Query 010863
Match_columns 498
No_of_seqs 352 out of 2447
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2462 C2H2-type Zn-finger pr 99.9 1E-24 2.2E-29 213.1 2.9 135 3-167 128-264 (279)
2 KOG2462 C2H2-type Zn-finger pr 99.9 1.8E-22 3.9E-27 197.4 5.8 103 3-127 159-263 (279)
3 KOG3576 Ovo and related transc 99.7 1.9E-17 4.1E-22 155.3 3.5 110 3-132 115-237 (267)
4 KOG3608 Zn finger proteins [Ge 99.7 2.9E-17 6.3E-22 164.6 4.2 175 2-191 204-397 (467)
5 KOG1074 Transcriptional repres 99.6 5.9E-16 1.3E-20 169.0 3.6 82 82-170 606-692 (958)
6 KOG3623 Homeobox transcription 99.6 1E-15 2.2E-20 164.6 4.9 167 6-190 211-394 (1007)
7 KOG3576 Ovo and related transc 99.5 1.8E-15 4E-20 142.0 -0.2 123 43-172 114-238 (267)
8 KOG1074 Transcriptional repres 99.4 2.2E-14 4.7E-19 156.9 2.1 81 3-103 603-690 (958)
9 KOG3608 Zn finger proteins [Ge 99.4 3E-14 6.4E-19 143.2 0.8 144 6-170 178-345 (467)
10 KOG3623 Homeobox transcription 99.4 2.6E-13 5.5E-18 146.4 3.2 104 46-167 210-330 (1007)
11 PLN03086 PRLI-interacting fact 99.1 1.1E-10 2.3E-15 127.0 8.4 103 3-131 451-564 (567)
12 PLN03086 PRLI-interacting fact 98.9 2.3E-09 5.1E-14 116.6 9.2 137 6-168 408-562 (567)
13 PHA00733 hypothetical protein 98.8 3.3E-09 7.1E-14 95.4 4.5 82 43-132 37-124 (128)
14 PHA00733 hypothetical protein 98.8 3.8E-09 8.2E-14 94.9 4.6 84 3-105 38-124 (128)
15 KOG3993 Transcription factor ( 98.7 2.4E-09 5.3E-14 110.4 -0.5 147 5-171 267-483 (500)
16 PHA02768 hypothetical protein; 98.4 1.8E-07 3.9E-12 71.4 2.3 45 4-70 4-48 (55)
17 PHA02768 hypothetical protein; 98.3 2.5E-07 5.5E-12 70.5 1.7 42 47-97 6-47 (55)
18 KOG3993 Transcription factor ( 98.2 6.9E-07 1.5E-11 92.6 1.9 81 46-133 267-382 (500)
19 PF13465 zf-H2C2_2: Zinc-finge 98.2 8.1E-07 1.8E-11 57.7 1.4 26 68-93 1-26 (26)
20 PHA00732 hypothetical protein 97.7 2.6E-05 5.6E-10 64.4 3.1 48 5-77 1-48 (79)
21 PHA00616 hypothetical protein 97.7 1.5E-05 3.3E-10 58.1 1.4 34 5-51 1-34 (44)
22 COG5189 SFP1 Putative transcri 97.6 1.5E-05 3.2E-10 80.2 0.8 70 43-127 346-418 (423)
23 COG5189 SFP1 Putative transcri 97.6 2.9E-05 6.3E-10 78.2 1.8 26 2-27 346-373 (423)
24 PF13465 zf-H2C2_2: Zinc-finge 97.4 8.6E-05 1.9E-09 48.2 1.8 26 20-65 1-26 (26)
25 PHA00616 hypothetical protein 97.4 4.9E-05 1.1E-09 55.5 0.6 35 46-87 1-35 (44)
26 PF05605 zf-Di19: Drought indu 97.4 0.0002 4.3E-09 54.6 4.0 52 5-77 2-53 (54)
27 PF00096 zf-C2H2: Zinc finger, 97.4 0.0001 2.2E-09 46.0 1.8 23 6-28 1-23 (23)
28 PHA00732 hypothetical protein 97.4 0.00013 2.9E-09 60.2 2.8 45 46-103 1-46 (79)
29 PF05605 zf-Di19: Drought indu 97.1 0.00061 1.3E-08 52.0 4.0 47 47-103 3-51 (54)
30 KOG1146 Homeobox protein [Gene 97.0 0.0008 1.7E-08 78.8 5.3 75 43-128 462-539 (1406)
31 PF13894 zf-C2H2_4: C2H2-type 97.0 0.00054 1.2E-08 42.4 2.2 24 6-29 1-24 (24)
32 PF12756 zf-C2H2_2: C2H2 type 96.8 0.00074 1.6E-08 56.5 2.6 72 7-103 1-72 (100)
33 PF13912 zf-C2H2_6: C2H2-type 96.8 0.00074 1.6E-08 43.7 1.6 25 5-29 1-25 (27)
34 KOG2231 Predicted E3 ubiquitin 96.7 0.0016 3.5E-08 72.5 4.8 29 6-34 100-143 (669)
35 PF00096 zf-C2H2: Zinc finger, 96.6 0.0015 3.2E-08 40.7 2.1 21 82-102 1-21 (23)
36 COG5048 FOG: Zn-finger [Genera 96.6 0.00098 2.1E-08 69.0 1.6 136 4-170 288-442 (467)
37 PF12756 zf-C2H2_2: C2H2 type 96.3 0.0027 5.8E-08 53.1 2.7 72 48-130 1-73 (100)
38 PF13894 zf-C2H2_4: C2H2-type 96.1 0.0053 1.2E-07 37.8 2.4 21 82-102 1-21 (24)
39 smart00355 ZnF_C2H2 zinc finge 95.9 0.0055 1.2E-07 38.2 2.2 24 6-29 1-24 (26)
40 KOG1146 Homeobox protein [Gene 95.7 0.013 2.8E-07 69.1 5.5 133 6-169 466-612 (1406)
41 PF13912 zf-C2H2_6: C2H2-type 95.7 0.0057 1.2E-07 39.5 1.4 22 108-129 1-23 (27)
42 PF09237 GAGA: GAGA factor; I 95.0 0.017 3.8E-07 43.4 2.2 31 78-108 21-52 (54)
43 PRK04860 hypothetical protein; 94.8 0.014 2.9E-07 54.7 1.6 35 81-119 119-155 (160)
44 PF12874 zf-met: Zinc-finger o 94.7 0.018 3.9E-07 36.4 1.4 23 6-28 1-23 (25)
45 PF09237 GAGA: GAGA factor; I 94.3 0.036 7.8E-07 41.7 2.4 28 2-29 21-48 (54)
46 PRK04860 hypothetical protein; 93.9 0.03 6.6E-07 52.4 1.8 19 139-157 136-154 (160)
47 smart00355 ZnF_C2H2 zinc finge 93.7 0.052 1.1E-06 33.6 2.2 21 109-129 1-22 (26)
48 COG5236 Uncharacterized conser 93.6 0.054 1.2E-06 55.7 3.2 110 5-127 151-271 (493)
49 COG5048 FOG: Zn-finger [Genera 92.5 0.045 9.8E-07 56.6 0.7 26 4-29 320-347 (467)
50 PF13909 zf-H2C2_5: C2H2-type 92.5 0.08 1.7E-06 33.2 1.6 23 6-29 1-23 (24)
51 PF12171 zf-C2H2_jaz: Zinc-fin 92.4 0.036 7.7E-07 36.0 -0.1 24 5-28 1-24 (27)
52 KOG2482 Predicted C2H2-type Zn 92.1 0.26 5.6E-06 50.8 5.5 119 44-168 142-356 (423)
53 KOG2231 Predicted E3 ubiquitin 91.7 0.15 3.2E-06 57.3 3.6 112 9-150 154-275 (669)
54 PF12874 zf-met: Zinc-finger o 91.7 0.099 2.1E-06 32.9 1.4 19 83-101 2-20 (25)
55 PF13909 zf-H2C2_5: C2H2-type 90.6 0.24 5.2E-06 31.0 2.4 21 109-130 1-22 (24)
56 KOG4173 Alpha-SNAP protein [In 90.2 0.11 2.4E-06 50.0 0.8 79 43-129 76-168 (253)
57 smart00451 ZnF_U1 U1-like zinc 88.6 0.3 6.5E-06 33.2 1.8 25 4-28 2-26 (35)
58 PF13913 zf-C2HC_2: zinc-finge 85.4 0.72 1.6E-05 29.6 2.1 21 6-27 3-23 (25)
59 COG5236 Uncharacterized conser 84.5 0.42 9.2E-06 49.4 1.1 77 46-129 151-242 (493)
60 KOG2932 E3 ubiquitin ligase in 84.1 20 0.00043 37.0 12.6 25 104-128 140-168 (389)
61 PF12171 zf-C2H2_jaz: Zinc-fin 83.8 0.67 1.5E-05 29.9 1.5 22 47-75 2-23 (27)
62 KOG2893 Zn finger protein [Gen 82.8 0.42 9.2E-06 47.0 0.3 19 8-26 13-31 (341)
63 smart00451 ZnF_U1 U1-like zinc 82.1 0.98 2.1E-05 30.6 1.8 22 82-103 4-25 (35)
64 KOG2482 Predicted C2H2-type Zn 81.9 1.2 2.6E-05 46.1 3.2 24 5-28 195-218 (423)
65 KOG2785 C2H2-type Zn-finger pr 81.4 2.4 5.3E-05 44.5 5.2 155 5-168 3-242 (390)
66 PF13913 zf-C2HC_2: zinc-finge 80.6 1.3 2.9E-05 28.4 1.9 19 83-102 4-22 (25)
67 KOG4173 Alpha-SNAP protein [In 76.7 0.89 1.9E-05 44.0 0.3 79 3-104 77-170 (253)
68 PF09538 FYDLN_acid: Protein o 76.7 1.8 3.8E-05 38.0 2.1 11 7-17 11-21 (108)
69 KOG2893 Zn finger protein [Gen 76.6 0.71 1.5E-05 45.5 -0.4 35 60-98 17-51 (341)
70 COG4049 Uncharacterized protei 76.1 1.2 2.6E-05 34.3 0.8 28 2-29 14-41 (65)
71 TIGR00622 ssl1 transcription f 71.8 7.4 0.00016 34.3 4.8 78 79-169 13-104 (112)
72 PF02892 zf-BED: BED zinc fing 70.6 3.4 7.4E-05 29.7 2.1 26 2-27 13-42 (45)
73 PF04959 ARS2: Arsenite-resist 69.7 1.7 3.8E-05 42.6 0.5 28 79-106 75-103 (214)
74 KOG2186 Cell growth-regulating 69.4 3.1 6.6E-05 41.6 2.1 44 82-127 4-48 (276)
75 PF09986 DUF2225: Uncharacteri 67.6 2.1 4.5E-05 41.9 0.5 44 44-94 3-61 (214)
76 KOG2071 mRNA cleavage and poly 67.5 4.1 8.8E-05 45.2 2.8 27 3-29 416-442 (579)
77 KOG2785 C2H2-type Zn-finger pr 66.9 8.7 0.00019 40.5 4.9 50 79-128 164-241 (390)
78 KOG4124 Putative transcription 66.6 1.4 3E-05 45.8 -0.9 22 3-25 211-232 (442)
79 PF09986 DUF2225: Uncharacteri 66.2 1.6 3.4E-05 42.7 -0.6 25 3-27 3-27 (214)
80 COG4049 Uncharacterized protei 65.9 2.9 6.2E-05 32.3 0.9 26 78-103 14-39 (65)
81 PF06524 NOA36: NOA36 protein; 65.4 4.7 0.0001 40.5 2.5 92 76-169 137-232 (314)
82 KOG4124 Putative transcription 63.7 1.7 3.8E-05 45.1 -0.9 26 3-28 347-374 (442)
83 cd00350 rubredoxin_like Rubred 63.7 4.8 0.0001 27.4 1.6 10 80-89 16-25 (33)
84 TIGR02300 FYDLN_acid conserved 60.8 6.2 0.00013 35.5 2.2 36 45-98 8-43 (129)
85 KOG2186 Cell growth-regulating 59.6 4.8 0.0001 40.2 1.4 49 6-77 4-52 (276)
86 PF12013 DUF3505: Protein of u 58.2 14 0.0003 31.9 3.9 24 108-131 80-108 (109)
87 smart00614 ZnF_BED BED zinc fi 57.6 7.2 0.00016 29.0 1.8 24 5-28 18-47 (50)
88 PRK00464 nrdR transcriptional 56.5 3.6 7.8E-05 38.3 -0.1 16 82-97 29-44 (154)
89 PF09538 FYDLN_acid: Protein o 56.5 8 0.00017 33.9 2.1 15 80-94 25-39 (108)
90 COG1997 RPL43A Ribosomal prote 56.4 4.5 9.7E-05 34.0 0.5 13 81-93 53-65 (89)
91 COG1592 Rubrerythrin [Energy p 52.9 9.7 0.00021 35.9 2.2 25 45-89 133-157 (166)
92 PF12013 DUF3505: Protein of u 52.2 24 0.00051 30.5 4.4 25 43-75 8-32 (109)
93 COG1997 RPL43A Ribosomal prote 48.9 11 0.00024 31.7 1.7 32 80-120 34-66 (89)
94 PF13717 zinc_ribbon_4: zinc-r 45.2 18 0.00038 25.3 2.0 11 83-93 4-14 (36)
95 PF05443 ROS_MUCR: ROS/MUCR tr 44.9 13 0.00029 33.7 1.7 26 1-29 68-93 (132)
96 PF13719 zinc_ribbon_5: zinc-r 43.5 19 0.00041 25.2 2.0 11 81-91 25-35 (37)
97 PRK00464 nrdR transcriptional 41.6 10 0.00022 35.4 0.4 15 107-121 27-42 (154)
98 TIGR00622 ssl1 transcription f 41.5 41 0.00089 29.7 4.2 19 5-23 15-33 (112)
99 TIGR02300 FYDLN_acid conserved 41.4 19 0.00042 32.4 2.1 34 81-124 9-43 (129)
100 KOG2593 Transcription initiati 41.0 23 0.00049 38.2 2.9 33 79-114 126-160 (436)
101 smart00531 TFIIE Transcription 40.2 30 0.00066 31.6 3.4 13 81-93 99-111 (147)
102 PF14353 CpXC: CpXC protein 37.8 32 0.00069 30.5 3.0 13 108-120 38-51 (128)
103 COG1198 PriA Primosomal protei 37.6 23 0.0005 40.9 2.6 14 76-89 457-470 (730)
104 cd00729 rubredoxin_SM Rubredox 36.9 23 0.00051 24.4 1.6 10 80-89 17-26 (34)
105 KOG4167 Predicted DNA-binding 36.6 8.4 0.00018 43.8 -1.0 27 3-29 790-816 (907)
106 PF04959 ARS2: Arsenite-resist 36.2 13 0.00028 36.5 0.3 33 41-80 72-104 (214)
107 KOG4377 Zn-finger protein [Gen 36.1 26 0.00057 37.4 2.5 26 4-29 270-297 (480)
108 PRK09678 DNA-binding transcrip 35.8 14 0.00031 30.0 0.4 7 113-119 35-41 (72)
109 TIGR02098 MJ0042_CXXC MJ0042 f 35.0 28 0.00061 24.0 1.8 11 81-91 25-35 (38)
110 smart00531 TFIIE Transcription 34.5 33 0.00071 31.4 2.6 37 105-156 96-133 (147)
111 TIGR00373 conserved hypothetic 34.3 31 0.00068 32.1 2.5 17 81-97 109-125 (158)
112 COG3091 SprT Zn-dependent meta 33.9 19 0.00042 33.4 1.0 11 81-92 117-127 (156)
113 smart00734 ZnF_Rad18 Rad18-lik 33.5 36 0.00079 22.0 1.9 21 6-27 2-22 (26)
114 COG4957 Predicted transcriptio 33.4 24 0.00053 32.1 1.5 21 6-29 77-97 (148)
115 KOG4140 Nuclear protein Ataxin 33.1 1.4E+02 0.003 32.9 7.2 12 7-18 115-126 (659)
116 PRK06266 transcription initiat 32.8 31 0.00068 32.8 2.3 16 81-96 117-132 (178)
117 COG1571 Predicted DNA-binding 32.8 25 0.00055 37.9 1.8 29 83-121 352-381 (421)
118 PF09845 DUF2072: Zn-ribbon co 32.3 21 0.00045 32.4 0.9 15 5-19 1-15 (131)
119 COG1592 Rubrerythrin [Energy p 31.8 26 0.00057 33.1 1.5 22 81-114 134-156 (166)
120 PTZ00255 60S ribosomal protein 31.7 24 0.00052 30.0 1.1 12 81-92 54-65 (90)
121 KOG4368 Predicted RNA binding 31.4 87 0.0019 35.1 5.5 13 296-308 376-388 (757)
122 PF15135 UPF0515: Uncharacteri 31.0 49 0.0011 33.2 3.3 58 43-119 109-167 (278)
123 TIGR02605 CxxC_CxxC_SSSS putat 30.9 20 0.00043 26.6 0.5 30 46-89 5-34 (52)
124 PRK04023 DNA polymerase II lar 30.8 45 0.00098 39.7 3.4 9 108-116 663-672 (1121)
125 COG5188 PRP9 Splicing factor 3 30.8 55 0.0012 34.4 3.7 87 4-100 237-394 (470)
126 smart00834 CxxC_CXXC_SSSS Puta 29.6 22 0.00048 24.7 0.5 31 46-90 5-35 (41)
127 PF01780 Ribosomal_L37ae: Ribo 29.4 20 0.00044 30.4 0.3 11 82-92 54-64 (90)
128 COG1198 PriA Primosomal protei 29.3 30 0.00065 40.0 1.8 10 146-155 475-484 (730)
129 TIGR00280 L37a ribosomal prote 29.1 26 0.00057 29.8 0.9 12 81-92 53-64 (91)
130 PRK06266 transcription initiat 28.4 33 0.00071 32.7 1.6 37 42-94 113-149 (178)
131 COG3357 Predicted transcriptio 28.2 32 0.00069 29.3 1.3 27 4-53 57-83 (97)
132 PRK14873 primosome assembly pr 28.1 19 0.0004 41.3 -0.2 14 76-89 405-418 (665)
133 COG4530 Uncharacterized protei 27.9 29 0.00063 30.5 1.0 14 79-92 24-37 (129)
134 TIGR00373 conserved hypothetic 27.5 38 0.00083 31.5 1.8 36 42-93 105-140 (158)
135 KOG1280 Uncharacterized conser 27.3 15 0.00033 38.3 -0.9 102 72-188 2-121 (381)
136 COG2331 Uncharacterized protei 26.7 23 0.00051 29.1 0.2 29 4-52 11-39 (82)
137 PF13878 zf-C2H2_3: zinc-finge 26.2 55 0.0012 23.5 2.0 25 5-29 13-39 (41)
138 PRK03976 rpl37ae 50S ribosomal 25.4 31 0.00068 29.3 0.7 12 81-92 54-65 (90)
139 PF04810 zf-Sec23_Sec24: Sec23 25.2 28 0.00061 24.7 0.4 23 69-91 12-34 (40)
140 PRK14890 putative Zn-ribbon RN 25.0 55 0.0012 25.6 2.0 8 107-114 47-55 (59)
141 COG4896 Uncharacterized protei 25.0 42 0.00091 26.5 1.3 34 6-52 3-37 (68)
142 PRK00398 rpoP DNA-directed RNA 24.4 34 0.00073 24.9 0.7 11 81-91 21-31 (46)
143 TIGR00595 priA primosomal prot 24.0 46 0.00099 36.8 1.9 18 73-90 232-249 (505)
144 PF05290 Baculo_IE-1: Baculovi 23.9 19 0.0004 32.8 -0.9 10 43-52 77-86 (140)
145 PHA00626 hypothetical protein 23.7 37 0.00081 26.3 0.8 16 4-19 22-37 (59)
146 KOG2932 E3 ubiquitin ligase in 23.7 42 0.0009 34.8 1.4 29 77-105 140-172 (389)
147 PF06220 zf-U1: U1 zinc finger 23.0 47 0.001 23.5 1.2 23 4-26 2-26 (38)
148 KOG4167 Predicted DNA-binding 22.9 21 0.00046 40.7 -0.9 25 107-131 791-816 (907)
149 KOG0320 Predicted E3 ubiquitin 22.6 35 0.00075 32.6 0.5 12 43-54 128-139 (187)
150 TIGR00595 priA primosomal prot 22.6 29 0.00064 38.3 0.1 21 70-90 242-262 (505)
151 PF09332 Mcm10: Mcm10 replicat 22.5 20 0.00044 37.7 -1.1 55 45-114 251-310 (344)
152 PF14446 Prok-RING_1: Prokaryo 22.4 80 0.0017 24.3 2.4 16 2-17 2-17 (54)
153 COG3677 Transposase and inacti 22.3 39 0.00084 30.5 0.8 17 78-94 50-66 (129)
154 TIGR01562 FdhE formate dehydro 21.9 47 0.001 34.4 1.4 13 77-89 206-218 (305)
155 smart00659 RPOLCX RNA polymera 21.8 65 0.0014 23.6 1.8 12 80-91 18-29 (44)
156 COG2888 Predicted Zn-ribbon RN 21.6 73 0.0016 25.0 2.0 31 81-115 27-58 (61)
157 KOG0696 Serine/threonine prote 21.0 36 0.00078 36.9 0.4 39 44-89 90-129 (683)
158 PF12760 Zn_Tnp_IS1595: Transp 20.6 1.3E+02 0.0028 21.9 3.1 11 79-89 35-45 (46)
159 KOG3002 Zn finger protein [Gen 20.5 59 0.0013 33.6 1.8 59 79-152 78-142 (299)
160 COG1996 RPC10 DNA-directed RNA 20.1 58 0.0013 24.6 1.2 11 80-90 23-33 (49)
No 1
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.90 E-value=1e-24 Score=213.10 Aligned_cols=135 Identities=19% Similarity=0.407 Sum_probs=125.2
Q ss_pred CCccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCccc
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW 82 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~ 82 (498)
..+|+|.+|||.|.+.++|.+|+.+|.. ....+.+.|++| +|.|.+...|+.|+++|+ -++
T Consensus 128 ~~r~~c~eCgk~ysT~snLsrHkQ~H~~----------~~s~ka~~C~~C-------~K~YvSmpALkMHirTH~--l~c 188 (279)
T KOG2462|consen 128 HPRYKCPECGKSYSTSSNLSRHKQTHRS----------LDSKKAFSCKYC-------GKVYVSMPALKMHIRTHT--LPC 188 (279)
T ss_pred CCceeccccccccccccccchhhccccc----------ccccccccCCCC-------CceeeehHHHhhHhhccC--CCc
Confidence 4579999999999999999999999961 114788999999 999999999999999998 579
Q ss_pred ccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCCC
Q 010863 83 KCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVA 160 (498)
Q Consensus 83 ~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~~C~~sf~~~s 160 (498)
+|.+|||.|.+.+.|+-|+|+ +|||||.|. |+|.|..+++|+.|+ .+|.+.|+|.|..|+|+|...+
T Consensus 189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHm-----------QTHS~~K~~qC~~C~KsFsl~S 257 (279)
T KOG2462|consen 189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHM-----------QTHSDVKKHQCPRCGKSFALKS 257 (279)
T ss_pred ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHH-----------HhhcCCccccCcchhhHHHHHH
Confidence 999999999999999999999 899999999 999999999999999 7888899999999999999999
Q ss_pred ccccccc
Q 010863 161 GASSHVN 167 (498)
Q Consensus 161 ~l~sH~~ 167 (498)
-|+.|.-
T Consensus 258 yLnKH~E 264 (279)
T KOG2462|consen 258 YLNKHSE 264 (279)
T ss_pred HHHHhhh
Confidence 9988864
No 2
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.86 E-value=1.8e-22 Score=197.39 Aligned_cols=103 Identities=26% Similarity=0.531 Sum_probs=99.2
Q ss_pred CCccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCccc
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW 82 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~ 82 (498)
.|-+.|++|+|.|...-.|+.|+|+|. -+++|.+| ||.|.+.+.|+.|+|+|||||||
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~iC-------GKaFSRPWLLQGHiRTHTGEKPF 216 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECGIC-------GKAFSRPWLLQGHIRTHTGEKPF 216 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC---------------CCcccccc-------cccccchHHhhcccccccCCCCc
Confidence 567999999999999999999999996 67899999 99999999999999999999999
Q ss_pred ccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCChHHHHHHH
Q 010863 83 KCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR 127 (498)
Q Consensus 83 ~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~ 127 (498)
.|..|+|.|..+++|+.||++ .+.|.|.|. |+|.|.+++.|.+|.
T Consensus 217 ~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ 263 (279)
T KOG2462|consen 217 SCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHS 263 (279)
T ss_pred cCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhh
Confidence 999999999999999999999 688999999 999999999999998
No 3
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.67 E-value=1.9e-17 Score=155.32 Aligned_cols=110 Identities=25% Similarity=0.550 Sum_probs=98.2
Q ss_pred CCccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCccc
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW 82 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~ 82 (498)
...|.|.+|+|.|....-|.+|++.|. ..|.|.|..| +|.|.+...|++|+|+|+|.+||
T Consensus 115 ~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvrpy 174 (267)
T KOG3576|consen 115 QDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVRPY 174 (267)
T ss_pred CCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcccc
Confidence 456899999999999999999999998 7889999999 89999999999999999999999
Q ss_pred ccCcCCccccchhHHHHHHhh-hCC-----------CceecC-CCCccCChHHHHHHHHHhhh
Q 010863 83 KCDKCSKRYAVQSDWKAHSKT-CGT-----------REYRCD-CGTLFSRRDSFITHRAFCDA 132 (498)
Q Consensus 83 ~C~~CgK~F~~~s~L~~H~r~-hge-----------kpy~C~-Cgk~F~~~s~L~~H~~~h~~ 132 (498)
+|..|+|.|..+-.|..|.+. ||. |.|.|+ ||..-.+...+..|++.|+.
T Consensus 175 kc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp 237 (267)
T KOG3576|consen 175 KCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP 237 (267)
T ss_pred chhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence 999999999999999999887 763 678888 88888888888888876653
No 4
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.67 E-value=2.9e-17 Score=164.60 Aligned_cols=175 Identities=17% Similarity=0.277 Sum_probs=139.6
Q ss_pred CCCccccCccCcccCChHHHHHHHHhcC----CCcccccc---------ccccc--cCcceeCCCCCCCCCCCCCccCCh
Q 010863 2 ATNRFVCEICNKGFQRDQNLQLHRRGHN----LPWKLKQR---------TSKEI--RKKVYVCPEPNCVHHDPSRALGDL 66 (498)
Q Consensus 2 gekpy~C~~CgK~F~~~s~L~~H~r~H~----~p~~c~~~---------~~~~~--~~k~y~C~~C~C~~~~~~k~F~~~ 66 (498)
+||-..|+.||..|.++..|..|+|.-+ .+|.|+.. .+.|+ ....|+|+.| +-.....
T Consensus 204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplC-------dmtc~~~ 276 (467)
T KOG3608|consen 204 NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLC-------DMTCSSA 276 (467)
T ss_pred CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhccccccc-------ccCCCCh
Confidence 5666667777777777777777766544 44555431 11121 2367999999 8899999
Q ss_pred hhHhhhhh-hccCCcccccCcCCccccchhHHHHHHhhhCCCceecC---CCCccCChHHHHHHHHHhhhcccccccccc
Q 010863 67 TGIKKHFC-RKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD---CGTLFSRRDSFITHRAFCDALAEESTRAIT 142 (498)
Q Consensus 67 s~Lk~H~r-~Htgekp~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~---Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~ 142 (498)
+.|.+|++ .|..+|||+|+.|++.|.+.++|.+|..+|.+-.|.|+ |..+|+....+++|++.++.. .
T Consensus 277 ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg--------~ 348 (467)
T KOG3608|consen 277 SSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEG--------N 348 (467)
T ss_pred HHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHHHHHHHHHHhccC--------C
Confidence 99999988 57889999999999999999999999999888889998 999999999999999654421 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccccCCCCCCCccccccchhhhhccc
Q 010863 143 GTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYS 191 (498)
Q Consensus 143 ~~kp~~C~~C~~sf~~~s~l~sH~~~~~p~~~~~~~~~~~~k~eqq~~~ 191 (498)
.+-+|.|-.|.+.|++-.+|..|++..+-...+....+|.||..+++|-
T Consensus 349 np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~edG~m 397 (467)
T KOG3608|consen 349 NPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDEDGFM 397 (467)
T ss_pred CCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccCcee
Confidence 3567999999999999999999998887777789999999999988643
No 5
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.58 E-value=5.9e-16 Score=168.96 Aligned_cols=82 Identities=17% Similarity=0.388 Sum_probs=63.8
Q ss_pred cccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCCCCC---CCCCCC
Q 010863 82 WKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSS---SSHHQP 156 (498)
Q Consensus 82 ~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~---~C~~sf 156 (498)
..|-+|.+...-++.|+.|.|+ +|||||+|+ |++.|.++.+|+.|+-+|.+ .+.-.-.+.|+ +|.+.|
T Consensus 606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka-------~p~~R~q~ScP~~~ic~~kf 678 (958)
T KOG1074|consen 606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA-------KPPARVQFSCPSTFICQKKF 678 (958)
T ss_pred cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc-------CccccccccCCchhhhcccc
Confidence 4688888888888888888888 688888888 88888888888888855532 12223468888 888888
Q ss_pred CCCCcccccccccC
Q 010863 157 GIVAGASSHVNLQI 170 (498)
Q Consensus 157 ~~~s~l~sH~~~~~ 170 (498)
...-.+..|+++|.
T Consensus 679 tn~V~lpQhIriH~ 692 (958)
T KOG1074|consen 679 TNAVTLPQHIRIHL 692 (958)
T ss_pred cccccccceEEeec
Confidence 88888888888876
No 6
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.58 E-value=1e-15 Score=164.65 Aligned_cols=167 Identities=19% Similarity=0.349 Sum_probs=124.8
Q ss_pred cccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhcc--------
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-------- 77 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Ht-------- 77 (498)
..|++|.+.|++...|+.|++..+ +..+..|.|..| .+.|.++..|.+||.+|.
T Consensus 211 ltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~s 272 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAIS 272 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCccccc
Confidence 579999999999999999998765 125667999999 899999999999999885
Q ss_pred -----CCcccccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCChHHHHHHHH--HhhhccccccccccCCCCCC
Q 010863 78 -----GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA--FCDALAEESTRAITGTNPIL 148 (498)
Q Consensus 78 -----gekp~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~--~h~~~~~~s~r~h~~~kp~~ 148 (498)
..|.|+|.+|+|.|+.+.+|+.|+|+ .|||||.|+ |+|+|+...++..||. .|-.+.-...|....-|...
T Consensus 273 ltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~vngr~R~~lKt~~ 352 (1007)
T KOG3623|consen 273 LTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCISLILVNGRNRALLKTLE 352 (1007)
T ss_pred ccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccchhhhhcccCcchhhhhhcc
Confidence 24789999999999999999999999 799999999 9999999999999984 23222222334444455566
Q ss_pred CCCCCCCCCCCCcccccccccCCCCCCCccccccchhhhhcc
Q 010863 149 SSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSY 190 (498)
Q Consensus 149 C~~C~~sf~~~s~l~sH~~~~~p~~~~~~~~~~~~k~eqq~~ 190 (498)
|+.-..+.........+.+..++......+....++-+...+
T Consensus 353 ~Sp~saSsSp~~s~~pq~r~klen~~slql~~~qistepsda 394 (1007)
T KOG3623|consen 353 KSPGSASSSPRRSPSPQGRGKLENQPSLQLLPHQISTEPSDA 394 (1007)
T ss_pred cCCcccCCCCCCCCChhHhhhccCchhhccCCcccccccchh
Confidence 655555545555555666655554333333444455555444
No 7
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.51 E-value=1.8e-15 Score=142.05 Aligned_cols=123 Identities=19% Similarity=0.324 Sum_probs=108.6
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCCh
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR 120 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~ 120 (498)
+...|.|.+| +|.|.....|.+|++.|...|.|.|..|||.|...-+|++|+|+ +|.+||+|. |+|.|..+
T Consensus 114 d~d~ftCrvC-------gK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr 186 (267)
T KOG3576|consen 114 DQDSFTCRVC-------GKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR 186 (267)
T ss_pred CCCeeeeehh-------hhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence 4567999999 89999999999999999999999999999999999999999999 899999999 99999999
Q ss_pred HHHHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCCCcccccccccCCC
Q 010863 121 DSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQ 172 (498)
Q Consensus 121 s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~~C~~sf~~~s~l~sH~~~~~p~ 172 (498)
-+|..|.+..|+.....+-.-..+|-|.|+.|+.+.......-.|++.++|.
T Consensus 187 csleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 187 CSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred ccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence 9999999877664433333333478899999999998888999999988753
No 8
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.44 E-value=2.2e-14 Score=156.89 Aligned_cols=81 Identities=22% Similarity=0.450 Sum_probs=68.5
Q ss_pred CCccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCC---
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE--- 79 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htge--- 79 (498)
+.|-.|-+|-++...++.|+.|+|+|+ +|++|+|.+| +|+|.++.+|+.||.+|...
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHt-------------GERPFkCKiC-------gRAFtTkGNLkaH~~vHka~p~~ 662 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHT-------------GERPFKCKIC-------GRAFTTKGNLKAHMSVHKAKPPA 662 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhccc-------------CcCccccccc-------cchhccccchhhcccccccCccc
Confidence 347789999999999999999999999 9999999999 89999999999999988643
Q ss_pred -cccccC---cCCccccchhHHHHHHhh
Q 010863 80 -KKWKCD---KCSKRYAVQSDWKAHSKT 103 (498)
Q Consensus 80 -kp~~C~---~CgK~F~~~s~L~~H~r~ 103 (498)
-.+.|+ +|-+.|...-.|..|+++
T Consensus 663 R~q~ScP~~~ic~~kftn~V~lpQhIri 690 (958)
T KOG1074|consen 663 RVQFSCPSTFICQKKFTNAVTLPQHIRI 690 (958)
T ss_pred cccccCCchhhhcccccccccccceEEe
Confidence 236677 788877777777766665
No 9
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.42 E-value=3e-14 Score=143.18 Aligned_cols=144 Identities=18% Similarity=0.329 Sum_probs=83.6
Q ss_pred cccC--ccCcccCChHHHHHHHHhcC--CCccccc---------------cccccccCcceeCCCCCCCCCCCCCccCCh
Q 010863 6 FVCE--ICNKGFQRDQNLQLHRRGHN--LPWKLKQ---------------RTSKEIRKKVYVCPEPNCVHHDPSRALGDL 66 (498)
Q Consensus 6 y~C~--~CgK~F~~~s~L~~H~r~H~--~p~~c~~---------------~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~ 66 (498)
+.|. -|-+.|.++.+|++|+|.|. +...|.. +....+...+|.|..| .|.|.+.
T Consensus 178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C-------~KrFaTe 250 (467)
T KOG3608|consen 178 TMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQC-------FKRFATE 250 (467)
T ss_pred eeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHH-------HHHHhHH
Confidence 4454 59999999999999999998 2222221 1111123344555555 5555555
Q ss_pred hhHhhhhhhccCCcccccCcCCccccchhHHHHHHhh-h-CCCceecC-CCCccCChHHHHHHHHHhhhccccccccccC
Q 010863 67 TGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-C-GTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITG 143 (498)
Q Consensus 67 s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~-h-gekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~ 143 (498)
..|+.|++.|. .-|+|+.|+.+....+.|.+|++. | ..|||+|+ |.+.|.+.++|.+|. .+|+
T Consensus 251 klL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~-----------~~HS- 316 (467)
T KOG3608|consen 251 KLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHV-----------QVHS- 316 (467)
T ss_pred HHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHH-----------Hhcc-
Confidence 55555555553 235666666666666666666665 3 44666666 666666666666665 3333
Q ss_pred CCCCCCCC--CCCCCCCCCcccccccccC
Q 010863 144 TNPILSSS--SHHQPGIVAGASSHVNLQI 170 (498)
Q Consensus 144 ~kp~~C~~--C~~sf~~~s~l~sH~~~~~ 170 (498)
+..|.|.. |..++.....+++|.+.++
T Consensus 317 ~~~y~C~h~~C~~s~r~~~q~~~H~~evh 345 (467)
T KOG3608|consen 317 KTVYQCEHPDCHYSVRTYTQMRRHFLEVH 345 (467)
T ss_pred ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence 44466654 6666555566666655554
No 10
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.36 E-value=2.6e-13 Score=146.38 Aligned_cols=104 Identities=25% Similarity=0.513 Sum_probs=93.4
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhhcc--CCcccccCcCCccccchhHHHHHHhhhC--------------CCce
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH--GEKKWKCDKCSKRYAVQSDWKAHSKTCG--------------TREY 109 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Ht--gekp~~C~~CgK~F~~~s~L~~H~r~hg--------------ekpy 109 (498)
...|++| ++.+++...|+.|++.-+ .+..|.|..|.++|..+..|.+|+.+|. -|.|
T Consensus 210 lltcpyc-------drgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKF 282 (1007)
T KOG3623|consen 210 LLTCPYC-------DRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKF 282 (1007)
T ss_pred hhcchhH-------HHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccc
Confidence 3689999 899999999999987533 3456999999999999999999998731 2679
Q ss_pred ecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCCCCCCCCCCCCCCCccccccc
Q 010863 110 RCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVN 167 (498)
Q Consensus 110 ~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~~C~~sf~~~s~l~sH~~ 167 (498)
+|. |+|.|+.+..|++|+ |+|.|||||.|+.|.|.|+...+..+||.
T Consensus 283 KCtECgKAFKfKHHLKEHl-----------RIHSGEKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 283 KCTECGKAFKFKHHLKEHL-----------RIHSGEKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred cccccchhhhhHHHHHhhh-----------eeecCCCCcCCcccccccccCCccccccc
Confidence 999 999999999999999 99999999999999999999999999984
No 11
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.12 E-value=1.1e-10 Score=126.95 Aligned_cols=103 Identities=21% Similarity=0.439 Sum_probs=72.9
Q ss_pred CCccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCccc
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW 82 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~ 82 (498)
++.+.|++|++.|. ...|..|+++|+ +++.|+ | ++.+ .+..|..|+.+|..+|++
T Consensus 451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi 505 (567)
T PLN03086 451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLI 505 (567)
T ss_pred ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCce
Confidence 35667888888775 566788877764 567777 6 5544 557778888778888888
Q ss_pred ccCcCCcccc----------chhHHHHHHhhhCCCceecC-CCCccCChHHHHHHHHHhh
Q 010863 83 KCDKCSKRYA----------VQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCD 131 (498)
Q Consensus 83 ~C~~CgK~F~----------~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~~~h~ 131 (498)
.|.+|++.|. ....|..|..++|.+++.|. |++.|..+ .|..|+..+|
T Consensus 506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence 8888887774 23467778777778888888 88777665 3677765443
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.93 E-value=2.3e-09 Score=116.58 Aligned_cols=137 Identities=18% Similarity=0.273 Sum_probs=104.7
Q ss_pred cccCccCcccCChHHHHHHHHhcC-----CC-ccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCC
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHN-----LP-WKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE 79 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~-----~p-~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htge 79 (498)
-.|..|.+.... .+|..|..... .| ..|.........++.+.|+.| ++.|. ...|.+|++.|+
T Consensus 408 V~C~NC~~~i~l-~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~C-------gk~f~-~s~LekH~~~~H-- 476 (567)
T PLN03086 408 VECRNCKHYIPS-RSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKC-------GQAFQ-QGEMEKHMKVFH-- 476 (567)
T ss_pred EECCCCCCccch-hHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCC-------CCccc-hHHHHHHHHhcC--
Confidence 469999887655 57889986654 22 136555555556788999999 88886 688999999986
Q ss_pred cccccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCC----------hHHHHHHHHHhhhccccccccccCCCCC
Q 010863 80 KKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR----------RDSFITHRAFCDALAEESTRAITGTNPI 147 (498)
Q Consensus 80 kp~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~----------~s~L~~H~~~h~~~~~~s~r~h~~~kp~ 147 (498)
+++.|+ |++.+ .+..|..|+++ +.+|++.|. |++.|.. ...|..|. .+ .+.+++
T Consensus 477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE-----------~~-CG~rt~ 542 (567)
T PLN03086 477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHE-----------SI-CGSRTA 542 (567)
T ss_pred CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHH-----------Hh-cCCcce
Confidence 889999 99865 67899999988 899999999 9999952 34788887 33 378999
Q ss_pred CCCCCCCCCCCCCcccccccc
Q 010863 148 LSSSSHHQPGIVAGASSHVNL 168 (498)
Q Consensus 148 ~C~~C~~sf~~~s~l~sH~~~ 168 (498)
.|..|++.+.. ..+..|+..
T Consensus 543 ~C~~Cgk~Vrl-rdm~~H~~~ 562 (567)
T PLN03086 543 PCDSCGRSVML-KEMDIHQIA 562 (567)
T ss_pred EccccCCeeee-hhHHHHHHH
Confidence 99999987643 445555443
No 13
>PHA00733 hypothetical protein
Probab=98.82 E-value=3.3e-09 Score=95.39 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=66.1
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhh--hh---hccCCcccccCcCCccccchhHHHHHHhhhCCCceecC-CCCc
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKH--FC---RKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTL 116 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H--~r---~Htgekp~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~ 116 (498)
..+.+.|.+| .+.|.....|..+ ++ .++++++|.|+.|++.|.....|..|++.+ +++|.|. |++.
T Consensus 37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~ 108 (128)
T PHA00733 37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE 108 (128)
T ss_pred hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence 5688999999 6677666655555 22 234588999999999999999999999875 4679999 9999
Q ss_pred cCChHHHHHHHHHhhh
Q 010863 117 FSRRDSFITHRAFCDA 132 (498)
Q Consensus 117 F~~~s~L~~H~~~h~~ 132 (498)
|.....|.+|++..|+
T Consensus 109 F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 109 FRNTDSTLDHVCKKHN 124 (128)
T ss_pred cCCHHHHHHHHHHhcC
Confidence 9999999999976553
No 14
>PHA00733 hypothetical protein
Probab=98.81 E-value=3.8e-09 Score=94.95 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=70.9
Q ss_pred CCccccCccCcccCChHHHHHH--HHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCc
Q 010863 3 TNRFVCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK 80 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H--~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgek 80 (498)
.|+++|.+|.+.|.....|..| ++.|. ....+++|.|+.| ++.|.....|..|++.| ++
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~C-------gk~Fss~s~L~~H~r~h--~~ 98 (128)
T PHA00733 38 QKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLC-------LMPFSSSVSLKQHIRYT--EH 98 (128)
T ss_pred hhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCC-------CCcCCCHHHHHHHHhcC--Cc
Confidence 5789999999999998877777 33322 1115789999999 89999999999999987 46
Q ss_pred ccccCcCCccccchhHHHHHHhh-hC
Q 010863 81 KWKCDKCSKRYAVQSDWKAHSKT-CG 105 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~L~~H~r~-hg 105 (498)
+|.|.+|++.|.....|++|+.. |+
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHHHhcC
Confidence 79999999999999999999987 65
No 15
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.69 E-value=2.4e-09 Score=110.39 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=95.5
Q ss_pred ccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccC------
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG------ 78 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htg------ 78 (498)
-|.|..|...|.+-..|-+|+.... -...|+|++| +|.|....+|..|.|.|.-
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPEC-------~KVFsCPANLASHRRWHKPR~eaa~ 326 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPEC-------DKVFSCPANLASHRRWHKPRPEAAK 326 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCcc-------cccccCchhhhhhhcccCCchhhhh
Confidence 3899999999999999999975432 3356999999 9999999999999999842
Q ss_pred --Cc-------------------------ccccCcCCccccchhHHHHHHhhhCC----C--------------ceecC-
Q 010863 79 --EK-------------------------KWKCDKCSKRYAVQSDWKAHSKTCGT----R--------------EYRCD- 112 (498)
Q Consensus 79 --ek-------------------------p~~C~~CgK~F~~~s~L~~H~r~hge----k--------------py~C~- 112 (498)
.+ -|.|.+|+|+|.+...|++|+.+|-. + -+-|.
T Consensus 327 a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~ 406 (500)
T KOG3993|consen 327 AGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA 406 (500)
T ss_pred cCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc
Confidence 11 26777777777777777777655211 0 12233
Q ss_pred CCCccCChHHHHHHHHHhhhcc------------------ccccccccCCCCCCCCCCCCCCCCCCcccccccccCC
Q 010863 113 CGTLFSRRDSFITHRAFCDALA------------------EESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIP 171 (498)
Q Consensus 113 Cgk~F~~~s~L~~H~~~h~~~~------------------~~s~r~h~~~kp~~C~~C~~sf~~~s~l~sH~~~~~p 171 (498)
|...|...+.--.+.-.+.... +...|.-..+.-|.|..|...|...-++.+|+++.++
T Consensus 407 ~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp 483 (500)
T KOG3993|consen 407 VATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP 483 (500)
T ss_pred cccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence 4444433332222221111100 0011222335568888888888888888888887765
No 16
>PHA02768 hypothetical protein; Provisional
Probab=98.37 E-value=1.8e-07 Score=71.37 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred CccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHh
Q 010863 4 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIK 70 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk 70 (498)
--|+|++|||.|....+|..|+++|+ ++|+|..| +|.|...+.|.
T Consensus 4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~ 48 (55)
T PHA02768 4 LGYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYI 48 (55)
T ss_pred cccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeE
Confidence 45899999999999999999999995 68999999 89998777654
No 17
>PHA02768 hypothetical protein; Provisional
Probab=98.30 E-value=2.5e-07 Score=70.55 Aligned_cols=42 Identities=14% Similarity=0.331 Sum_probs=27.8
Q ss_pred eeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHH
Q 010863 47 YVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDW 97 (498)
Q Consensus 47 y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L 97 (498)
|+|++| ++.|.....|..|+++|+ ++|+|..|+|.|.+.+.|
T Consensus 6 y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 6 YECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred cCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence 566666 666766666777766666 566666666666655544
No 18
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.17 E-value=6.9e-07 Score=92.62 Aligned_cols=81 Identities=19% Similarity=0.472 Sum_probs=69.1
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHHHHHhhhCC-------------------
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGT------------------- 106 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~hge------------------- 106 (498)
.|.|..| ...|.+...|.+|.+.--..-.|+|++|+|.|.-..+|..|+|.|.-
T Consensus 267 dyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~r 339 (500)
T KOG3993|consen 267 DYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETR 339 (500)
T ss_pred HHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhh
Confidence 5999999 78999999999998754444569999999999999999999987421
Q ss_pred ---------------CceecC-CCCccCChHHHHHHHHHhhhc
Q 010863 107 ---------------REYRCD-CGTLFSRRDSFITHRAFCDAL 133 (498)
Q Consensus 107 ---------------kpy~C~-Cgk~F~~~s~L~~H~~~h~~~ 133 (498)
..|.|. |+|+|++...|++|+..|+..
T Consensus 340 ae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 340 AEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred hhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 148999 999999999999999888653
No 19
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.16 E-value=8.1e-07 Score=57.75 Aligned_cols=26 Identities=31% Similarity=0.792 Sum_probs=22.9
Q ss_pred hHhhhhhhccCCcccccCcCCccccc
Q 010863 68 GIKKHFCRKHGEKKWKCDKCSKRYAV 93 (498)
Q Consensus 68 ~Lk~H~r~Htgekp~~C~~CgK~F~~ 93 (498)
+|.+|+++|+++|||.|++|++.|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 47899999999999999999999863
No 20
>PHA00732 hypothetical protein
Probab=97.71 E-value=2.6e-05 Score=64.38 Aligned_cols=48 Identities=23% Similarity=0.433 Sum_probs=32.7
Q ss_pred ccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhcc
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH 77 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Ht 77 (498)
||+|++|++.|.....|+.|++.++ . ++.|++| ++.|. .|..|++++.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H-------------~--~~~C~~C-------gKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNH-------------T--LTKCPVC-------NKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhccc-------------C--CCccCCC-------CCEeC---ChhhhhcccC
Confidence 5778888888888888888877432 1 2467777 77776 4667775543
No 21
>PHA00616 hypothetical protein
Probab=97.70 E-value=1.5e-05 Score=58.14 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=31.4
Q ss_pred ccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCC
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPE 51 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~ 51 (498)
||+|..||+.|..++.|..|++.|+ +++++.|+.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~ 34 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY 34 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence 6999999999999999999999999 788888865
No 22
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.63 E-value=1.5e-05 Score=80.20 Aligned_cols=70 Identities=23% Similarity=0.501 Sum_probs=38.7
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhhhhhcc-CCcccccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCC
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR 119 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Ht-gekp~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~ 119 (498)
++|+|+|++-+| .|.|+....|+-|+..-+ ..+...-+ .-..|.-. ...|||+|+ |+|+|+.
T Consensus 346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p----------~p~~~~~F~~~~KPYrCevC~KRYKN 410 (423)
T COG5189 346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENP----------SPEKMNIFSAKDKPYRCEVCDKRYKN 410 (423)
T ss_pred cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCC----------CccccccccccCCceeccccchhhcc
Confidence 457777777777 777777777777765322 11100000 00001011 234777777 7777777
Q ss_pred hHHHHHHH
Q 010863 120 RDSFITHR 127 (498)
Q Consensus 120 ~s~L~~H~ 127 (498)
..-|+.|+
T Consensus 411 lNGLKYHr 418 (423)
T COG5189 411 LNGLKYHR 418 (423)
T ss_pred Cccceecc
Confidence 77777775
No 23
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.57 E-value=2.9e-05 Score=78.16 Aligned_cols=26 Identities=23% Similarity=0.622 Sum_probs=23.4
Q ss_pred CCCccccCc--cCcccCChHHHHHHHHh
Q 010863 2 ATNRFVCEI--CNKGFQRDQNLQLHRRG 27 (498)
Q Consensus 2 gekpy~C~~--CgK~F~~~s~L~~H~r~ 27 (498)
++|||+|++ |.|.|+....|+-|+.-
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lh 373 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH 373 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhc
Confidence 469999998 99999999999999764
No 24
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=97.40 E-value=8.6e-05 Score=48.20 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=23.3
Q ss_pred HHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCC
Q 010863 20 NLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGD 65 (498)
Q Consensus 20 ~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~ 65 (498)
+|.+|+++|. ++++|.|++| ++.|..
T Consensus 1 ~l~~H~~~H~-------------~~k~~~C~~C-------~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHT-------------GEKPYKCPYC-------GKSFSN 26 (26)
T ss_dssp HHHHHHHHHS-------------SSSSEEESSS-------SEEESS
T ss_pred CHHHHhhhcC-------------CCCCCCCCCC-------cCeeCc
Confidence 5899999998 9999999999 888863
No 25
>PHA00616 hypothetical protein
Probab=97.39 E-value=4.9e-05 Score=55.49 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=23.9
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcC
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC 87 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~C 87 (498)
+|+|+.| |+.|..+..|.+|++.|++++++.|++-
T Consensus 1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~ 35 (44)
T PHA00616 1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYF 35 (44)
T ss_pred CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence 4667777 6777777777777777777777766653
No 26
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.39 E-value=0.0002 Score=54.65 Aligned_cols=52 Identities=25% Similarity=0.439 Sum_probs=32.1
Q ss_pred ccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhcc
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH 77 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Ht 77 (498)
.|.|++|++ ..+...|..|....+.. ..+.+.|++| ...+. .+|.+|+..++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~-----------~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRS-----------ESKNVVCPIC-------SSRVT--DNLIRHLNSQH 53 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcC-----------CCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence 477888888 44456788886665411 3356778887 44333 36777766554
No 27
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.37 E-value=0.0001 Score=46.00 Aligned_cols=23 Identities=43% Similarity=0.908 Sum_probs=21.7
Q ss_pred cccCccCcccCChHHHHHHHHhc
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGH 28 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H 28 (498)
|+|++|++.|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 79999999999999999999875
No 28
>PHA00732 hypothetical protein
Probab=97.35 E-value=0.00013 Score=60.18 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=35.9
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhh-ccCCcccccCcCCccccchhHHHHHHhh
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCR-KHGEKKWKCDKCSKRYAVQSDWKAHSKT 103 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~-Htgekp~~C~~CgK~F~~~s~L~~H~r~ 103 (498)
+|.|++| ++.|.....|++|++. |.+ +.|++|++.|. .|..|.++
T Consensus 1 py~C~~C-------gk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~ 46 (79)
T PHA00732 1 MFKCPIC-------GFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS 46 (79)
T ss_pred CccCCCC-------CCccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence 4788888 8889999999999884 543 57999999887 47788766
No 29
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.10 E-value=0.00061 Score=51.96 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=21.7
Q ss_pred eeCCCCCCCCCCCCCccCChhhHhhhhhh-ccCC-cccccCcCCccccchhHHHHHHhh
Q 010863 47 YVCPEPNCVHHDPSRALGDLTGIKKHFCR-KHGE-KKWKCDKCSKRYAVQSDWKAHSKT 103 (498)
Q Consensus 47 y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~-Htge-kp~~C~~CgK~F~~~s~L~~H~r~ 103 (498)
|.|++| ++ ..+...|..|... |..+ +.+.|++|.+.+. .+|..|++.
T Consensus 3 f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 3 FTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS 51 (54)
T ss_pred cCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence 555555 44 2334455555443 2222 3455555555433 245555544
No 30
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.99 E-value=0.0008 Score=78.75 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=39.0
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHHHHHhh--hCCCceecC-CCCccCC
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT--CGTREYRCD-CGTLFSR 119 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~--hgekpy~C~-Cgk~F~~ 119 (498)
..|.|+|+.| +..|+....|..|||..+-+-.- .+| +.+.....+.+ ..+ .+.++|.|. |...|..
T Consensus 462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~--~~c-~~gq~~~~~ar-g~~~~~~~~p~~C~~C~~sttt 530 (1406)
T KOG1146|consen 462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS--AYC-KAGQNHPRLAR-GEVYRCPGKPYPCRACNYSTTT 530 (1406)
T ss_pred ccccccCCcc-------chhhhhHHHhhhcccccccccch--hHh-Hhccccccccc-cccccCCCCcccceeeeeeeec
Confidence 4467777777 67777777777777763322111 222 11111111111 011 344566666 6666666
Q ss_pred hHHHHHHHH
Q 010863 120 RDSFITHRA 128 (498)
Q Consensus 120 ~s~L~~H~~ 128 (498)
+..|.+|++
T Consensus 531 ng~Lsihlq 539 (1406)
T KOG1146|consen 531 NGNLSIHLQ 539 (1406)
T ss_pred chHHHHHHH
Confidence 666666655
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.97 E-value=0.00054 Score=42.45 Aligned_cols=24 Identities=42% Similarity=0.901 Sum_probs=20.5
Q ss_pred cccCccCcccCChHHHHHHHHhcC
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
|+|++|++.|.+...|..|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999874
No 32
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.84 E-value=0.00074 Score=56.55 Aligned_cols=72 Identities=18% Similarity=0.456 Sum_probs=16.1
Q ss_pred ccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCc
Q 010863 7 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK 86 (498)
Q Consensus 7 ~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~ 86 (498)
+|..|+..|.....|..|+...+ +-. .+. .+.+.....+..+++... ...|.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H-------------~~~---~~~--------~~~l~~~~~~~~~~~~~~-~~~~~C~~ 55 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKH-------------GFD---IPD--------QKYLVDPNRLLNYLRKKV-KESFRCPY 55 (100)
T ss_dssp -------------------------------------------------------------------------SSEEBSS
T ss_pred Ccccccccccccccccccccccc-------------ccc---ccc--------cccccccccccccccccc-CCCCCCCc
Confidence 47888888888888888876554 110 001 111222333333333221 12567777
Q ss_pred CCccccchhHHHHHHhh
Q 010863 87 CSKRYAVQSDWKAHSKT 103 (498)
Q Consensus 87 CgK~F~~~s~L~~H~r~ 103 (498)
|++.|.....|..|++.
T Consensus 56 C~~~f~s~~~l~~Hm~~ 72 (100)
T PF12756_consen 56 CNKTFRSREALQEHMRS 72 (100)
T ss_dssp SS-EESSHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHcC
Confidence 77777777777777776
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.76 E-value=0.00074 Score=43.75 Aligned_cols=25 Identities=36% Similarity=0.711 Sum_probs=23.6
Q ss_pred ccccCccCcccCChHHHHHHHHhcC
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
+|+|.+|++.|.+...|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 6999999999999999999999885
No 34
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0016 Score=72.47 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=19.8
Q ss_pred cccCccCcccC---------------ChHHHHHHHHhcCCCccc
Q 010863 6 FVCEICNKGFQ---------------RDQNLQLHRRGHNLPWKL 34 (498)
Q Consensus 6 y~C~~CgK~F~---------------~~s~L~~H~r~H~~p~~c 34 (498)
+.|.+|++.|. ....|+.|++.-|+.+.|
T Consensus 100 ~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~~~c 143 (669)
T KOG2231|consen 100 HSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKLHLC 143 (669)
T ss_pred hhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhhhcc
Confidence 56777777773 677899999665534333
No 35
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.60 E-value=0.0015 Score=40.68 Aligned_cols=21 Identities=33% Similarity=0.812 Sum_probs=10.4
Q ss_pred cccCcCCccccchhHHHHHHh
Q 010863 82 WKCDKCSKRYAVQSDWKAHSK 102 (498)
Q Consensus 82 ~~C~~CgK~F~~~s~L~~H~r 102 (498)
|+|++|++.|.++..|++|++
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMR 21 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHh
Confidence 345555555555555555544
No 36
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.55 E-value=0.00098 Score=69.00 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=98.5
Q ss_pred CccccCccCcccCChHHHHHHHH--hcCCCccccccccccccC--cceeCC--CCCCCCCCCCCccCChhhHhhhhhhcc
Q 010863 4 NRFVCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTSKEIRK--KVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKH 77 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s~L~~H~r--~H~~p~~c~~~~~~~~~~--k~y~C~--~C~C~~~~~~k~F~~~s~Lk~H~r~Ht 77 (498)
.++.|..|.+.|.+...|.+|.+ .|. .+ +++.|+ .| ++.|.+...+++|...|+
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~ 347 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT 347 (467)
T ss_pred cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence 47889999999999999999998 676 66 899999 67 899999999999999999
Q ss_pred CCcccccCc--CCccccchhHH----HHHHhh--hCCCceecC---CCCccCChHHHHHHHHHhhhccccccccccC--C
Q 010863 78 GEKKWKCDK--CSKRYAVQSDW----KAHSKT--CGTREYRCD---CGTLFSRRDSFITHRAFCDALAEESTRAITG--T 144 (498)
Q Consensus 78 gekp~~C~~--CgK~F~~~s~L----~~H~r~--hgekpy~C~---Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~--~ 144 (498)
+.+++.|.. |.+.+.....- ...... ...+.+.|. |...+.+...+..|. ..+.. .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 416 (467)
T COG5048 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI-----------ITHLSFRP 416 (467)
T ss_pred CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhcccccccccc-----------ccccccCC
Confidence 888777754 55555544441 111111 455667776 777777777777776 33333 3
Q ss_pred CCCCCCCCCCCCCCCCcccccccccC
Q 010863 145 NPILSSSSHHQPGIVAGASSHVNLQI 170 (498)
Q Consensus 145 kp~~C~~C~~sf~~~s~l~sH~~~~~ 170 (498)
..+.+..|.+.+.....+..|.+.+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (467)
T COG5048 417 YNCKNPPCSKSFNRHYNLIPHKKIHT 442 (467)
T ss_pred cCCCCCcchhhccCcccccccccccc
Confidence 35777788888888888877776553
No 37
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=96.32 E-value=0.0027 Score=53.12 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=20.5
Q ss_pred eCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHHHHHhhhCCCceecC-CCCccCChHHHHHH
Q 010863 48 VCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH 126 (498)
Q Consensus 48 ~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H 126 (498)
+|..| +..|.....|..|+...++-..- ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus 1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H 69 (100)
T PF12756_consen 1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH 69 (100)
T ss_dssp -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence 48888 89999999999999876653211 11122233344444443233479999 99999999999999
Q ss_pred HHHh
Q 010863 127 RAFC 130 (498)
Q Consensus 127 ~~~h 130 (498)
++.+
T Consensus 70 m~~~ 73 (100)
T PF12756_consen 70 MRSK 73 (100)
T ss_dssp HHHT
T ss_pred HcCc
Confidence 9754
No 38
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.06 E-value=0.0053 Score=37.83 Aligned_cols=21 Identities=24% Similarity=0.757 Sum_probs=9.0
Q ss_pred cccCcCCccccchhHHHHHHh
Q 010863 82 WKCDKCSKRYAVQSDWKAHSK 102 (498)
Q Consensus 82 ~~C~~CgK~F~~~s~L~~H~r 102 (498)
|.|++|++.|.....|+.|++
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHH
Confidence 344444444444444444444
No 39
>smart00355 ZnF_C2H2 zinc finger.
Probab=95.95 E-value=0.0055 Score=38.19 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=22.2
Q ss_pred cccCccCcccCChHHHHHHHHhcC
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
|+|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 789999999999999999999774
No 40
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.74 E-value=0.013 Score=69.09 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=76.8
Q ss_pred cccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccC
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD 85 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~ 85 (498)
|+|+.|+..|+....|..|+|.-+ .+..- .+| +.+.....+.+-...--+.++|.|.
T Consensus 466 ~~cpkc~~~yk~a~~L~vhmRskh-------------p~~~~--~~c--------~~gq~~~~~arg~~~~~~~~p~~C~ 522 (1406)
T KOG1146|consen 466 LKCPKCNWHYKLAQTLGVHMRSKH-------------PESQS--AYC--------KAGQNHPRLARGEVYRCPGKPYPCR 522 (1406)
T ss_pred ccCCccchhhhhHHHhhhcccccc-------------cccch--hHh--------HhccccccccccccccCCCCcccce
Confidence 049999999999999999999854 11111 444 2232222222222223356899999
Q ss_pred cCCccccchhHHHHHHhh--hCCCceecCCCCccCChHHHHHHHHHhhhc-----ccc------ccccccCCC-CCCCCC
Q 010863 86 KCSKRYAVQSDWKAHSKT--CGTREYRCDCGTLFSRRDSFITHRAFCDAL-----AEE------STRAITGTN-PILSSS 151 (498)
Q Consensus 86 ~CgK~F~~~s~L~~H~r~--hgekpy~C~Cgk~F~~~s~L~~H~~~h~~~-----~~~------s~r~h~~~k-p~~C~~ 151 (498)
.|...+..+..|.+|+.. |..+.-. .......|.+.+... -++ ....-..++ .+.|..
T Consensus 523 ~C~~stttng~LsihlqS~~h~~~lee--------~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~v 594 (1406)
T KOG1146|consen 523 ACNYSTTTNGNLSIHLQSDLHRNELEE--------AEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEV 594 (1406)
T ss_pred eeeeeeecchHHHHHHHHHhhHHHHHH--------HHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhh
Confidence 999999999999999987 4321000 000011111111110 000 011112223 488999
Q ss_pred CCCCCCCCCccccccccc
Q 010863 152 SHHQPGIVAGASSHVNLQ 169 (498)
Q Consensus 152 C~~sf~~~s~l~sH~~~~ 169 (498)
|....+...+++-|+..-
T Consensus 595 c~yetniarnlrihmtss 612 (1406)
T KOG1146|consen 595 CSYETNIARNLRIHMTAS 612 (1406)
T ss_pred hcchhhhhhccccccccC
Confidence 999999999998887643
No 41
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=95.67 E-value=0.0057 Score=39.52 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=12.7
Q ss_pred ceecC-CCCccCChHHHHHHHHH
Q 010863 108 EYRCD-CGTLFSRRDSFITHRAF 129 (498)
Q Consensus 108 py~C~-Cgk~F~~~s~L~~H~~~ 129 (498)
+|.|+ |++.|.....|.+|++.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 35566 66666666666666533
No 42
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=94.98 E-value=0.017 Score=43.40 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=17.7
Q ss_pred CCcccccCcCCccccchhHHHHHHhh-hCCCc
Q 010863 78 GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTRE 108 (498)
Q Consensus 78 gekp~~C~~CgK~F~~~s~L~~H~r~-hgekp 108 (498)
.+.|-.|++|+..+....+|++|+.+ |+.|+
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 45667777777777777777777766 66654
No 43
>PRK04860 hypothetical protein; Provisional
Probab=94.82 E-value=0.014 Score=54.70 Aligned_cols=35 Identities=29% Similarity=0.750 Sum_probs=21.3
Q ss_pred ccccCcCCccccchhHHHHHHhh-hCCCceecC-CCCccCC
Q 010863 81 KWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR 119 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~ 119 (498)
+|.|. |++ ....+++|.++ .++++|.|. |++.|..
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~ 155 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF 155 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence 46665 665 44556666666 566666666 6666554
No 44
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.66 E-value=0.018 Score=36.42 Aligned_cols=23 Identities=43% Similarity=0.980 Sum_probs=21.4
Q ss_pred cccCccCcccCChHHHHHHHHhc
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGH 28 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H 28 (498)
|.|++|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999865
No 45
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=94.27 E-value=0.036 Score=41.75 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=20.9
Q ss_pred CCCccccCccCcccCChHHHHHHHHhcC
Q 010863 2 ATNRFVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 2 gekpy~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
.+.|-.|++|+..+....+|++|++.+|
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHh
Confidence 3678899999999999999999998877
No 46
>PRK04860 hypothetical protein; Provisional
Probab=93.88 E-value=0.03 Score=52.37 Aligned_cols=19 Identities=11% Similarity=0.044 Sum_probs=10.2
Q ss_pred ccccCCCCCCCCCCCCCCC
Q 010863 139 RAITGTNPILSSSSHHQPG 157 (498)
Q Consensus 139 r~h~~~kp~~C~~C~~sf~ 157 (498)
++|+++++|.|..|...+.
T Consensus 136 ri~~g~~~YrC~~C~~~l~ 154 (160)
T PRK04860 136 RVVRGEAVYRCRRCGETLV 154 (160)
T ss_pred HHhcCCccEECCCCCceeE
Confidence 4455555555555555544
No 47
>smart00355 ZnF_C2H2 zinc finger.
Probab=93.72 E-value=0.052 Score=33.58 Aligned_cols=21 Identities=33% Similarity=0.885 Sum_probs=13.9
Q ss_pred eecC-CCCccCChHHHHHHHHH
Q 010863 109 YRCD-CGTLFSRRDSFITHRAF 129 (498)
Q Consensus 109 y~C~-Cgk~F~~~s~L~~H~~~ 129 (498)
|.|. |++.|.....|..|++.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHH
Confidence 4566 77777777777777643
No 48
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.62 E-value=0.054 Score=55.68 Aligned_cols=110 Identities=16% Similarity=0.210 Sum_probs=53.9
Q ss_pred ccccCc--cCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcc-
Q 010863 5 RFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKK- 81 (498)
Q Consensus 5 py~C~~--CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp- 81 (498)
.|.|+. |..+...-..|+.|.+..|...-|.... ..++.|.|+. +.| ++..|+.|...-..+.-
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~---~nKk~F~~E~---------~lF-~~~~Lr~H~~~G~~e~GF 217 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECI---GNKKDFWNEI---------RLF-RSSTLRDHKNGGLEEEGF 217 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhh---cCcccCccce---------eee-ecccccccccCCccccCc
Confidence 367765 6666555678999988765222222100 0112222211 111 23444555433222211
Q ss_pred ---cccCcCCccccchhHHHHHHhhhCCCceecC-CC----CccCChHHHHHHH
Q 010863 82 ---WKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CG----TLFSRRDSFITHR 127 (498)
Q Consensus 82 ---~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cg----k~F~~~s~L~~H~ 127 (498)
-.|..|.+.|-.-..|.+|+|.--|+-|.|+ -+ .-|.....|..|-
T Consensus 218 KGHP~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF 271 (493)
T COG5236 218 KGHPLCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHF 271 (493)
T ss_pred CCCchhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHh
Confidence 2466666666666666666666334555554 22 2355556666665
No 49
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=92.50 E-value=0.045 Score=56.57 Aligned_cols=26 Identities=35% Similarity=0.666 Sum_probs=24.9
Q ss_pred CccccC--ccCcccCChHHHHHHHHhcC
Q 010863 4 NRFVCE--ICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 4 kpy~C~--~CgK~F~~~s~L~~H~r~H~ 29 (498)
+++.|+ .|++.|.+...+.+|...|.
T Consensus 320 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 347 (467)
T COG5048 320 KPFSCPYSLCGKLFSRNDALKRHILLHT 347 (467)
T ss_pred CceeeeccCCCccccccccccCCccccc
Confidence 899999 79999999999999999998
No 50
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=92.47 E-value=0.08 Score=33.20 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=19.0
Q ss_pred cccCccCcccCChHHHHHHHHhcC
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
|+|+.|+.... +..|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 79999999998 899999999875
No 51
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=92.44 E-value=0.036 Score=36.01 Aligned_cols=24 Identities=29% Similarity=0.787 Sum_probs=20.9
Q ss_pred ccccCccCcccCChHHHHHHHHhc
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H 28 (498)
.|.|.+|++.|.+...|..|++..
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCCcccCCCCcCCHHHHHHHHccC
Confidence 378999999999999999998753
No 52
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=92.11 E-value=0.26 Score=50.82 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=78.1
Q ss_pred CcceeCCCCCCCCCCCCCccCChhhHhhhhhhccC--------------------C--cccccCcCCccccchhHHHHHH
Q 010863 44 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG--------------------E--KKWKCDKCSKRYAVQSDWKAHS 101 (498)
Q Consensus 44 ~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htg--------------------e--kp~~C~~CgK~F~~~s~L~~H~ 101 (498)
.+..+|-.|. ......++.+..|+-..++ + ..+.|-+|.|.|..+..|+.||
T Consensus 142 ~fslqClFCn------~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHM 215 (423)
T KOG2482|consen 142 IFSLQCLFCN------NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHM 215 (423)
T ss_pred eeeeEEEEec------chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHH
Confidence 3456788884 3445556667777543222 1 1367888999998888888888
Q ss_pred hh--hCC---C----------------------------------------------------ceecC-CCCccCChHHH
Q 010863 102 KT--CGT---R----------------------------------------------------EYRCD-CGTLFSRRDSF 123 (498)
Q Consensus 102 r~--hge---k----------------------------------------------------py~C~-Cgk~F~~~s~L 123 (498)
|. |.. | .-.|- |....-+...|
T Consensus 216 rkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l 295 (423)
T KOG2482|consen 216 RKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFL 295 (423)
T ss_pred HhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHH
Confidence 86 421 0 13677 88888888999
Q ss_pred HHHHHHhhhccccc----------ccc--c----cCCCCCCCCCCCCCCCCCCcccccccc
Q 010863 124 ITHRAFCDALAEES----------TRA--I----TGTNPILSSSSHHQPGIVAGASSHVNL 168 (498)
Q Consensus 124 ~~H~~~h~~~~~~s----------~r~--h----~~~kp~~C~~C~~sf~~~s~l~sH~~~ 168 (498)
..||+..|...-.. .++ . ...+...|-.|.-+|-....+..|+-.
T Consensus 296 ~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e 356 (423)
T KOG2482|consen 296 FEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE 356 (423)
T ss_pred HHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence 99998776532111 010 0 123446678888899999999888753
No 53
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.15 Score=57.28 Aligned_cols=112 Identities=19% Similarity=0.233 Sum_probs=70.2
Q ss_pred CccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcC-
Q 010863 9 EICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC- 87 (498)
Q Consensus 9 ~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~C- 87 (498)
..|.|.|.. ..|.+|++.-- + ..+.....-.|..| ...|.....|.+|++.++ |.|..|
T Consensus 154 ~~e~k~Yt~-~el~~h~~~gd-~-------d~~s~rGhp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~ 213 (669)
T KOG2231|consen 154 INERKLYTR-AELNLHLMFGD-P-------DDESCRGHPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCD 213 (669)
T ss_pred eeeeehehH-HHHHHHHhcCC-C-------ccccccCCccchhh-------hhhhccHHHHHHhhccce----eheeecC
Confidence 345666665 56788876532 1 01111224578999 899999999999999876 566666
Q ss_pred -----CccccchhHHHHHHhhhCCCceecC---CC-CccCChHHHHHHHHHhhhccccccccccCCCCCCCC
Q 010863 88 -----SKRYAVQSDWKAHSKTCGTREYRCD---CG-TLFSRRDSFITHRAFCDALAEESTRAITGTNPILSS 150 (498)
Q Consensus 88 -----gK~F~~~s~L~~H~r~hgekpy~C~---Cg-k~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~ 150 (498)
+..|....+|..|-|. ..|.|+ |. +.|.....+..|++.|. +.+..++.|.|.
T Consensus 214 ~~~~~neyy~~~~dLe~HfR~---~HflCE~~~C~~~~f~~~~~~ei~lk~~~-------~~~~~e~~~~~~ 275 (669)
T KOG2231|consen 214 YKTGQNEYYNDYDDLEEHFRK---GHFLCEEEFCRTKKFYVAFELEIELKAHN-------RFIQHEKCYICR 275 (669)
T ss_pred cccccchhcccchHHHHHhhh---cCccccccccccceeeehhHHHHHHHhhc-------cccchheeccCC
Confidence 4567777889999886 337776 53 34444445555555443 234446666664
No 54
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=91.70 E-value=0.099 Score=32.94 Aligned_cols=19 Identities=26% Similarity=0.726 Sum_probs=8.3
Q ss_pred ccCcCCccccchhHHHHHH
Q 010863 83 KCDKCSKRYAVQSDWKAHS 101 (498)
Q Consensus 83 ~C~~CgK~F~~~s~L~~H~ 101 (498)
.|.+|++.|.....|+.|+
T Consensus 2 ~C~~C~~~f~s~~~~~~H~ 20 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHL 20 (25)
T ss_dssp EETTTTEEESSHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHH
Confidence 3444444444444444443
No 55
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=90.63 E-value=0.24 Score=30.97 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=9.9
Q ss_pred eecC-CCCccCChHHHHHHHHHh
Q 010863 109 YRCD-CGTLFSRRDSFITHRAFC 130 (498)
Q Consensus 109 y~C~-Cgk~F~~~s~L~~H~~~h 130 (498)
|+|. |..... +..|.+|++.+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 4555 555554 55555555443
No 56
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=0.11 Score=49.99 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=64.3
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHHHHHhh-h----------CCCceec
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-C----------GTREYRC 111 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~-h----------gekpy~C 111 (498)
+...|.|++-+| -+.|........|.-+-++ ..|.+|.+.|.+..-|..|+.. | |...|.|
T Consensus 76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C 147 (253)
T KOG4173|consen 76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC 147 (253)
T ss_pred ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence 446689999988 7888888877787765544 3899999999999999999865 4 3446999
Q ss_pred C---CCCccCChHHHHHHHHH
Q 010863 112 D---CGTLFSRRDSFITHRAF 129 (498)
Q Consensus 112 ~---Cgk~F~~~s~L~~H~~~ 129 (498)
- |+.+|.+....+.|+-.
T Consensus 148 lvEgCt~KFkT~r~RkdH~I~ 168 (253)
T KOG4173|consen 148 LVEGCTEKFKTSRDRKDHMIR 168 (253)
T ss_pred HHHhhhhhhhhhhhhhhHHHH
Confidence 5 99999999999999843
No 57
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=88.64 E-value=0.3 Score=33.16 Aligned_cols=25 Identities=28% Similarity=0.769 Sum_probs=21.9
Q ss_pred CccccCccCcccCChHHHHHHHHhc
Q 010863 4 NRFVCEICNKGFQRDQNLQLHRRGH 28 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s~L~~H~r~H 28 (498)
.+|.|++|++.|.....+..|++..
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHChH
Confidence 3689999999999999999998754
No 58
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=85.41 E-value=0.72 Score=29.59 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=17.8
Q ss_pred cccCccCcccCChHHHHHHHHh
Q 010863 6 FVCEICNKGFQRDQNLQLHRRG 27 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~ 27 (498)
..|++||+.| ....|..|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 5799999999 55789999875
No 59
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=84.47 E-value=0.42 Score=49.36 Aligned_cols=77 Identities=27% Similarity=0.552 Sum_probs=56.1
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCC---------ccccchhHHHHHHhh-hCC---Cc-eec
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCS---------KRYAVQSDWKAHSKT-CGT---RE-YRC 111 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~Cg---------K~F~~~s~L~~H~r~-hge---kp-y~C 111 (498)
.|.|+.-.| .........|+.|.+..++. +-|.+|- ....++..|+.|... -.+ |- -.|
T Consensus 151 ~F~CP~skc-----~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C 223 (493)
T COG5236 151 SFKCPKSKC-----HRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLC 223 (493)
T ss_pred HhcCCchhh-----hhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchh
Confidence 488998776 78888889999999876653 5666652 233455677888766 222 22 358
Q ss_pred C-CCCccCChHHHHHHHHH
Q 010863 112 D-CGTLFSRRDSFITHRAF 129 (498)
Q Consensus 112 ~-Cgk~F~~~s~L~~H~~~ 129 (498)
. |.+.|-..+.|.+|++.
T Consensus 224 ~FC~~~FYdDDEL~~HcR~ 242 (493)
T COG5236 224 IFCKIYFYDDDELRRHCRL 242 (493)
T ss_pred hhccceecChHHHHHHHHh
Confidence 8 99999999999999963
No 60
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.11 E-value=20 Score=37.00 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=21.5
Q ss_pred hCCCceecC----CCCccCChHHHHHHHH
Q 010863 104 CGTREYRCD----CGTLFSRRDSFITHRA 128 (498)
Q Consensus 104 hgekpy~C~----Cgk~F~~~s~L~~H~~ 128 (498)
.-+..|.|. |.++|-...+|..|+.
T Consensus 140 ~~g~iFmC~~~~GC~RTyLsqrDlqAHIn 168 (389)
T KOG2932|consen 140 MMGGIFMCAAPHGCLRTYLSQRDLQAHIN 168 (389)
T ss_pred cccceEEeecchhHHHHHhhHHHHHHHhh
Confidence 445679996 9999999999999984
No 61
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=83.82 E-value=0.67 Score=29.91 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=13.5
Q ss_pred eeCCCCCCCCCCCCCccCChhhHhhhhhh
Q 010863 47 YVCPEPNCVHHDPSRALGDLTGIKKHFCR 75 (498)
Q Consensus 47 y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~ 75 (498)
|.|..| ++.|.+...|..|++.
T Consensus 2 ~~C~~C-------~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDAC-------DKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTT-------TBBBSSHHHHHCCTTS
T ss_pred CCcccC-------CCCcCCHHHHHHHHcc
Confidence 456666 5666666666666554
No 62
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=82.83 E-value=0.42 Score=47.05 Aligned_cols=19 Identities=32% Similarity=0.761 Sum_probs=9.3
Q ss_pred cCccCcccCChHHHHHHHH
Q 010863 8 CEICNKGFQRDQNLQLHRR 26 (498)
Q Consensus 8 C~~CgK~F~~~s~L~~H~r 26 (498)
|=+|++.|.+..-|..|++
T Consensus 13 cwycnrefddekiliqhqk 31 (341)
T KOG2893|consen 13 CWYCNREFDDEKILIQHQK 31 (341)
T ss_pred eeecccccchhhhhhhhhh
Confidence 4445555555444444443
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=82.07 E-value=0.98 Score=30.58 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=13.2
Q ss_pred cccCcCCccccchhHHHHHHhh
Q 010863 82 WKCDKCSKRYAVQSDWKAHSKT 103 (498)
Q Consensus 82 ~~C~~CgK~F~~~s~L~~H~r~ 103 (498)
|.|++|++.|.....+..|++.
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred eEccccCCccCCHHHHHHHHCh
Confidence 5566666666666666666544
No 64
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=81.90 E-value=1.2 Score=46.06 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=22.1
Q ss_pred ccccCccCcccCChHHHHHHHHhc
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRGH 28 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~H 28 (498)
++.|-+|.|.|..+..|+.|||..
T Consensus 195 r~~CLyCekifrdkntLkeHMrkK 218 (423)
T KOG2482|consen 195 RLRCLYCEKIFRDKNTLKEHMRKK 218 (423)
T ss_pred hheeeeeccccCCcHHHHHHHHhc
Confidence 688999999999999999999864
No 65
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=81.40 E-value=2.4 Score=44.54 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=96.7
Q ss_pred ccccCccCcccCChHHHHHHHHh--cCCCccccc-----------------------ccc-ccccCcceeCCCCCCCCCC
Q 010863 5 RFVCEICNKGFQRDQNLQLHRRG--HNLPWKLKQ-----------------------RTS-KEIRKKVYVCPEPNCVHHD 58 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~H~r~--H~~p~~c~~-----------------------~~~-~~~~~k~y~C~~C~C~~~~ 58 (498)
-|.|.-|...|.....-+.|+++ |. |..+. ... ....+-++.|..|
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHR--YNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c------ 74 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHR--YNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEAC------ 74 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHH--hhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHh------
Confidence 48999999999998877888775 43 11110 011 2345678999999
Q ss_pred CCCccCChhhHhhhhhhccC-----------------Ccccc-------------cCcCCccccchhHHHHHHh------
Q 010863 59 PSRALGDLTGIKKHFCRKHG-----------------EKKWK-------------CDKCSKRYAVQSDWKAHSK------ 102 (498)
Q Consensus 59 ~~k~F~~~s~Lk~H~r~Htg-----------------ekp~~-------------C~~CgK~F~~~s~L~~H~r------ 102 (498)
.|.|.....-..|+..... .+... +..|-..+........+..
T Consensus 75 -~k~~~s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~~E~~~~~d~~~e~~~dd~~Ed 153 (390)
T KOG2785|consen 75 -NKSFASPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKWYEVDSDEDSSEEEEEDDEEED 153 (390)
T ss_pred -hccccChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccchhhcccccccchhhccCcchhh
Confidence 8999998888888763210 01122 2223222222222222211
Q ss_pred h--hC-----CCceecC-CCCccCChHHHHHHHHHhhhcccccccccc------------CCCCCCCCCCC---CCCCCC
Q 010863 103 T--CG-----TREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAIT------------GTNPILSSSSH---HQPGIV 159 (498)
Q Consensus 103 ~--hg-----ekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~------------~~kp~~C~~C~---~sf~~~ 159 (498)
+ -+ .-|-.|- |++.|..-..-.+||..+|+..-+...--+ -..-+.|-.|+ +.|.+.
T Consensus 154 i~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sl 233 (390)
T KOG2785|consen 154 IEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSL 233 (390)
T ss_pred hhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCccccc
Confidence 1 11 1246688 999999999999999988875433211111 12357888888 999999
Q ss_pred Ccccccccc
Q 010863 160 AGASSHVNL 168 (498)
Q Consensus 160 s~l~sH~~~ 168 (498)
...+.||..
T Consensus 234 eavr~HM~~ 242 (390)
T KOG2785|consen 234 EAVRAHMRD 242 (390)
T ss_pred HHHHHHHhh
Confidence 999999864
No 66
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=80.63 E-value=1.3 Score=28.36 Aligned_cols=19 Identities=21% Similarity=0.663 Sum_probs=9.6
Q ss_pred ccCcCCccccchhHHHHHHh
Q 010863 83 KCDKCSKRYAVQSDWKAHSK 102 (498)
Q Consensus 83 ~C~~CgK~F~~~s~L~~H~r 102 (498)
.|++|++.| ..+.|.+|++
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 455555555 3444555543
No 67
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.74 E-value=0.89 Score=43.96 Aligned_cols=79 Identities=19% Similarity=0.384 Sum_probs=61.3
Q ss_pred CCccccCc--cCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhc----
Q 010863 3 TNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRK---- 76 (498)
Q Consensus 3 ekpy~C~~--CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H---- 76 (498)
...|.|.+ |-..|.....+..|..+-+ --.|.+| .|.|.+...|..|+..-
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h----------------~~sCs~C-------~r~~Pt~hLLd~HI~E~HDs~ 133 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLH----------------GNSCSFC-------KRAFPTGHLLDAHILEWHDSL 133 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhcc----------------cchhHHH-------HHhCCchhhhhHHHHHHHHHH
Confidence 45677887 7788888777777766544 2469999 89999999999997643
Q ss_pred ------cCCcccccC--cCCccccchhHHHHHHhh-h
Q 010863 77 ------HGEKKWKCD--KCSKRYAVQSDWKAHSKT-C 104 (498)
Q Consensus 77 ------tgekp~~C~--~CgK~F~~~s~L~~H~r~-h 104 (498)
.|...|.|- .|+..|.+...-+.|+-. |
T Consensus 134 Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 134 FQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred HHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 245569994 499999999999999876 5
No 68
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=76.73 E-value=1.8 Score=38.01 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=8.6
Q ss_pred ccCccCcccCC
Q 010863 7 VCEICNKGFQR 17 (498)
Q Consensus 7 ~C~~CgK~F~~ 17 (498)
.|+.||++|..
T Consensus 11 ~Cp~CG~kFYD 21 (108)
T PF09538_consen 11 TCPSCGAKFYD 21 (108)
T ss_pred cCCCCcchhcc
Confidence 68888888865
No 69
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=76.57 E-value=0.71 Score=45.52 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=17.8
Q ss_pred CCccCChhhHhhhhhhccCCcccccCcCCccccchhHHH
Q 010863 60 SRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWK 98 (498)
Q Consensus 60 ~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~ 98 (498)
.+.|.+...|..|.+.. .|+|.+|.|...+--.|.
T Consensus 17 nrefddekiliqhqkak----hfkchichkkl~sgpgls 51 (341)
T KOG2893|consen 17 NREFDDEKILIQHQKAK----HFKCHICHKKLFSGPGLS 51 (341)
T ss_pred ccccchhhhhhhhhhhc----cceeeeehhhhccCCCce
Confidence 55565555555555432 256666655444433333
No 70
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=76.08 E-value=1.2 Score=34.27 Aligned_cols=28 Identities=18% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCCccccCccCcccCChHHHHHHHHhcC
Q 010863 2 ATNRFVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 2 gekpy~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
||.-++|+.||+.|.+...+.+|+...|
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 5677999999999999999999987654
No 71
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.78 E-value=7.4 Score=34.34 Aligned_cols=78 Identities=10% Similarity=0.140 Sum_probs=45.9
Q ss_pred CcccccCcCCccccchhHHHHHHhh-hCCC------------ceecC-CCCccCChHHHHHHHHHhhhccccccccccCC
Q 010863 79 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTR------------EYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGT 144 (498)
Q Consensus 79 ekp~~C~~CgK~F~~~s~L~~H~r~-hgek------------py~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~ 144 (498)
+-|..|++|+-+.....+|.|--.. --.+ ...|. |.+.|....... . ..-...
T Consensus 13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~--~-----------~~~~~~ 79 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP--F-----------DELKDS 79 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccc--c-----------cccccc
Confidence 3467788888887777777653221 0111 12388 888887543111 0 012234
Q ss_pred CCCCCCCCCCCCCCCCccccccccc
Q 010863 145 NPILSSSSHHQPGIVAGASSHVNLQ 169 (498)
Q Consensus 145 kp~~C~~C~~sf~~~s~l~sH~~~~ 169 (498)
..|.|..|.+.|-..-++--|..+|
T Consensus 80 ~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 80 HRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred cceeCCCCCCccccccchhhhhhcc
Confidence 5788888888888777666666554
No 72
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=70.58 E-value=3.4 Score=29.71 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=17.5
Q ss_pred CCCccccCccCcccCCh----HHHHHHHHh
Q 010863 2 ATNRFVCEICNKGFQRD----QNLQLHRRG 27 (498)
Q Consensus 2 gekpy~C~~CgK~F~~~----s~L~~H~r~ 27 (498)
+++..+|.+|++.+... ++|.+|++.
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~~ 42 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLKK 42 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence 35678999999999885 789999854
No 73
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=69.67 E-value=1.7 Score=42.56 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=14.9
Q ss_pred CcccccCcCCccccchhHHHHHHhh-hCC
Q 010863 79 EKKWKCDKCSKRYAVQSDWKAHSKT-CGT 106 (498)
Q Consensus 79 ekp~~C~~CgK~F~~~s~L~~H~r~-hge 106 (498)
+..|.|..|+|.|.-...+++|+.. |.+
T Consensus 75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred CCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 3446666666666666666666655 443
No 74
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.36 E-value=3.1 Score=41.57 Aligned_cols=44 Identities=25% Similarity=0.684 Sum_probs=23.0
Q ss_pred cccCcCCccccchhHHHHHHhhhCCCceecC-CCCccCChHHHHHHH
Q 010863 82 WKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHR 127 (498)
Q Consensus 82 ~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~ 127 (498)
|.|..||.... +..+.+|+..+...-|.|- |++.|-+ .+++.|.
T Consensus 4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhh
Confidence 45555555433 3345556555222456665 6666655 4455554
No 75
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=67.59 E-value=2.1 Score=41.91 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=28.9
Q ss_pred CcceeCCCCCCCCCCCCCccCChhhHhhhhhhc----------cCCcc-----cccCcCCccccch
Q 010863 44 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRK----------HGEKK-----WKCDKCSKRYAVQ 94 (498)
Q Consensus 44 ~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~H----------tgekp-----~~C~~CgK~F~~~ 94 (498)
+|.+.||+| ++.|..+.-+....+.- .+..| +.|+.||.+|...
T Consensus 3 ~k~~~CPvC-------~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 3 DKKITCPVC-------GKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CCceECCCC-------CCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 567899999 78888776555554431 12222 5788888877654
No 76
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=67.51 E-value=4.1 Score=45.23 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCccccCccCcccCChHHHHHHHHhcC
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
.++-.|..||++|.+......|+..|-
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 457899999999999999998888885
No 77
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=66.95 E-value=8.7 Score=40.54 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=38.5
Q ss_pred CcccccCcCCccccchhHHHHHHhh-hCC-----------------------CceecC-CC---CccCChHHHHHHHH
Q 010863 79 EKKWKCDKCSKRYAVQSDWKAHSKT-CGT-----------------------REYRCD-CG---TLFSRRDSFITHRA 128 (498)
Q Consensus 79 ekp~~C~~CgK~F~~~s~L~~H~r~-hge-----------------------kpy~C~-Cg---k~F~~~s~L~~H~~ 128 (498)
.-|-.|-.|++.|..-..-..||.. ||- .-|.|- |. +.|......+.||.
T Consensus 164 ~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~ 241 (390)
T KOG2785|consen 164 LIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMR 241 (390)
T ss_pred cCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHh
Confidence 3455678888888888777788876 652 247788 88 99999999999995
No 78
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=66.61 E-value=1.4 Score=45.77 Aligned_cols=22 Identities=9% Similarity=-0.139 Sum_probs=17.2
Q ss_pred CCccccCccCcccCChHHHHHHH
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHR 25 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~ 25 (498)
-+||+| .|++.+..+..|+.|-
T Consensus 211 ~~p~k~-~~~~~~~T~~~l~~HS 232 (442)
T KOG4124|consen 211 GTPKKM-PESLVMDTSSPLSDHS 232 (442)
T ss_pred cCCccC-cccccccccchhhhcc
Confidence 367888 4889998888888773
No 79
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.25 E-value=1.6 Score=42.74 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=19.7
Q ss_pred CCccccCccCcccCChHHHHHHHHh
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRG 27 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~ 27 (498)
+|.++|++|++.|..+.-+....|.
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~ 27 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRV 27 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceE
Confidence 6889999999999998665555543
No 80
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=65.87 E-value=2.9 Score=32.27 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=12.3
Q ss_pred CCcccccCcCCccccchhHHHHHHhh
Q 010863 78 GEKKWKCDKCSKRYAVQSDWKAHSKT 103 (498)
Q Consensus 78 gekp~~C~~CgK~F~~~s~L~~H~r~ 103 (498)
||.-++|+-|++.|....++.+|...
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhH
Confidence 34444455555555444444444443
No 81
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=65.37 E-value=4.7 Score=40.47 Aligned_cols=92 Identities=17% Similarity=0.362 Sum_probs=53.7
Q ss_pred ccCCcccccCcCCccccchhHHHHHHhh---hCCCceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCCCCCC
Q 010863 76 KHGEKKWKCDKCSKRYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSS 151 (498)
Q Consensus 76 Htgekp~~C~~CgK~F~~~s~L~~H~r~---hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~~ 151 (498)
.+|.+.|+|.+|.. |.-..+--.|+.. -....|+|. |.+.= ..+-|+--.-++..-.+...-.....+++.|+.
T Consensus 137 ~hGGrif~CsfC~~-flCEDDQFEHQAsCQvLe~E~~KC~SCNrlG-q~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPK 214 (314)
T PF06524_consen 137 DHGGRIFKCSFCDN-FLCEDDQFEHQASCQVLESETFKCQSCNRLG-QYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPK 214 (314)
T ss_pred cCCCeEEEeecCCC-eeeccchhhhhhhhhhhhccccccccccccc-chhhhheeeeehhhhhhhcccccccCCCCCCCC
Confidence 46788999999976 5555666678776 234568887 76532 222232111111111111122334568999999
Q ss_pred CCCCCCCCCccccccccc
Q 010863 152 SHHQPGIVAGASSHVNLQ 169 (498)
Q Consensus 152 C~~sf~~~s~l~sH~~~~ 169 (498)
|+.-......|.-..+.|
T Consensus 215 Cg~et~eTkdLSmStR~h 232 (314)
T PF06524_consen 215 CGYETQETKDLSMSTRSH 232 (314)
T ss_pred CCCcccccccceeeeecc
Confidence 998877766666555544
No 82
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=63.74 E-value=1.7 Score=45.08 Aligned_cols=26 Identities=19% Similarity=0.678 Sum_probs=21.2
Q ss_pred CCccccCc--cCcccCChHHHHHHHHhc
Q 010863 3 TNRFVCEI--CNKGFQRDQNLQLHRRGH 28 (498)
Q Consensus 3 ekpy~C~~--CgK~F~~~s~L~~H~r~H 28 (498)
+|+|+|.+ |.|.++....|+.|...-
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~ 374 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHG 374 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccC
Confidence 68999976 999999988888886543
No 83
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=63.71 E-value=4.8 Score=27.43 Aligned_cols=10 Identities=30% Similarity=1.069 Sum_probs=7.3
Q ss_pred cccccCcCCc
Q 010863 80 KKWKCDKCSK 89 (498)
Q Consensus 80 kp~~C~~CgK 89 (498)
.+|.|++|+.
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 5678888865
No 84
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=60.80 E-value=6.2 Score=35.51 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=24.3
Q ss_pred cceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHH
Q 010863 45 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWK 98 (498)
Q Consensus 45 k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~ 98 (498)
....|+.| +++|.... ..|..|++||..|.....++
T Consensus 8 tKr~Cp~c-------g~kFYDLn-----------k~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 8 TKRICPNT-------GSKFYDLN-----------RRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred ccccCCCc-------CccccccC-----------CCCccCCCcCCccCcchhhc
Confidence 34678888 77776552 25778888888886654443
No 85
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.58 E-value=4.8 Score=40.24 Aligned_cols=49 Identities=14% Similarity=0.412 Sum_probs=25.1
Q ss_pred cccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhcc
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH 77 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Ht 77 (498)
|.|.+||...... .|.+|+...+ ...|.|-.| ++.|.. ...+.|...-+
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCr--------------n~~fSCIDC-------~k~F~~-~sYknH~kCIT 52 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCR--------------NAYFSCIDC-------GKTFER-VSYKNHTKCIT 52 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhcc--------------CCeeEEeec-------cccccc-chhhhhhhhcc
Confidence 5566666555443 4555555443 245556555 555554 44455544433
No 86
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=58.19 E-value=14 Score=31.92 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=20.9
Q ss_pred ceec----C-CCCccCChHHHHHHHHHhh
Q 010863 108 EYRC----D-CGTLFSRRDSFITHRAFCD 131 (498)
Q Consensus 108 py~C----~-Cgk~F~~~s~L~~H~~~h~ 131 (498)
-|.| . |+..+.+...+.+|.+.+|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~H 108 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEH 108 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhc
Confidence 4899 7 9999999999999997654
No 87
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=57.63 E-value=7.2 Score=28.97 Aligned_cols=24 Identities=42% Similarity=0.761 Sum_probs=19.9
Q ss_pred ccccCccCcccCCh-----HHHHHHHH-hc
Q 010863 5 RFVCEICNKGFQRD-----QNLQLHRR-GH 28 (498)
Q Consensus 5 py~C~~CgK~F~~~-----s~L~~H~r-~H 28 (498)
.-+|.+|++.+... ++|.+|++ .|
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 46799999999876 58999998 45
No 88
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=56.51 E-value=3.6 Score=38.35 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=10.9
Q ss_pred cccCcCCccccchhHH
Q 010863 82 WKCDKCSKRYAVQSDW 97 (498)
Q Consensus 82 ~~C~~CgK~F~~~s~L 97 (498)
++|+.||++|.....+
T Consensus 29 ~~c~~c~~~f~~~e~~ 44 (154)
T PRK00464 29 RECLACGKRFTTFERV 44 (154)
T ss_pred eeccccCCcceEeEec
Confidence 6777777777665443
No 89
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=56.46 E-value=8 Score=33.92 Aligned_cols=15 Identities=20% Similarity=0.625 Sum_probs=7.9
Q ss_pred cccccCcCCccccch
Q 010863 80 KKWKCDKCSKRYAVQ 94 (498)
Q Consensus 80 kp~~C~~CgK~F~~~ 94 (498)
.|..|++||..|...
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 355555555555443
No 90
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=56.43 E-value=4.5 Score=34.02 Aligned_cols=13 Identities=46% Similarity=1.232 Sum_probs=8.2
Q ss_pred ccccCcCCccccc
Q 010863 81 KWKCDKCSKRYAV 93 (498)
Q Consensus 81 p~~C~~CgK~F~~ 93 (498)
-|.|..|++.|.-
T Consensus 53 IW~C~kCg~~fAG 65 (89)
T COG1997 53 IWKCRKCGAKFAG 65 (89)
T ss_pred eEEcCCCCCeecc
Confidence 3677777766643
No 91
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=52.93 E-value=9.7 Score=35.95 Aligned_cols=25 Identities=36% Similarity=0.680 Sum_probs=18.8
Q ss_pred cceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCc
Q 010863 45 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK 89 (498)
Q Consensus 45 k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK 89 (498)
+.|.|++| |. +|.++-|.+|++|+-
T Consensus 133 ~~~vC~vC-------Gy-------------~~~ge~P~~CPiCga 157 (166)
T COG1592 133 KVWVCPVC-------GY-------------THEGEAPEVCPICGA 157 (166)
T ss_pred CEEEcCCC-------CC-------------cccCCCCCcCCCCCC
Confidence 37899999 54 445678889999983
No 92
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=52.16 E-value=24 Score=30.49 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=15.4
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhhhhh
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCR 75 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~ 75 (498)
.-+...|..| ..... ...+..|++.
T Consensus 8 ~~~vlIC~~C-------~~av~-~~~v~~HL~~ 32 (109)
T PF12013_consen 8 EYRVLICRQC-------QYAVQ-PSEVESHLRK 32 (109)
T ss_pred cCCEEEeCCC-------CcccC-chHHHHHHHH
Confidence 3466778887 34333 3677777773
No 93
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=48.91 E-value=11 Score=31.70 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=22.6
Q ss_pred cccccCcCCccccchhHHHHHHhhhCCCceecC-CCCccCCh
Q 010863 80 KKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRR 120 (498)
Q Consensus 80 kp~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~ 120 (498)
.+|.|+.|++.-. .| -+...+.|. |+..|.--
T Consensus 34 ~~~~Cp~C~~~~V--------kR-~a~GIW~C~kCg~~fAGg 66 (89)
T COG1997 34 AKHVCPFCGRTTV--------KR-IATGIWKCRKCGAKFAGG 66 (89)
T ss_pred cCCcCCCCCCcce--------ee-eccCeEEcCCCCCeeccc
Confidence 4689999988621 22 244679999 99998743
No 94
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=45.17 E-value=18 Score=25.25 Aligned_cols=11 Identities=27% Similarity=1.108 Sum_probs=4.8
Q ss_pred ccCcCCccccc
Q 010863 83 KCDKCSKRYAV 93 (498)
Q Consensus 83 ~C~~CgK~F~~ 93 (498)
.|+.|++.|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 34444444443
No 95
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=44.90 E-value=13 Score=33.72 Aligned_cols=26 Identities=31% Similarity=0.691 Sum_probs=0.0
Q ss_pred CCCCccccCccCcccCChHHHHHHHHhcC
Q 010863 1 MATNRFVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 1 ~gekpy~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
+.+.-..|-+|||.|+. |++|.+.|+
T Consensus 68 I~~d~i~clecGk~~k~---LkrHL~~~~ 93 (132)
T PF05443_consen 68 ITPDYIICLECGKKFKT---LKRHLRTHH 93 (132)
T ss_dssp B-SS-EE-TBT--EESB---HHHHHHHTT
T ss_pred cccCeeEEccCCcccch---HHHHHHHcc
No 96
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=43.53 E-value=19 Score=25.18 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=5.1
Q ss_pred ccccCcCCccc
Q 010863 81 KWKCDKCSKRY 91 (498)
Q Consensus 81 p~~C~~CgK~F 91 (498)
..+|..|+..|
T Consensus 25 ~vrC~~C~~~f 35 (37)
T PF13719_consen 25 KVRCPKCGHVF 35 (37)
T ss_pred EEECCCCCcEe
Confidence 34455554444
No 97
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=41.64 E-value=10 Score=35.37 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=11.1
Q ss_pred CceecC-CCCccCChH
Q 010863 107 REYRCD-CGTLFSRRD 121 (498)
Q Consensus 107 kpy~C~-Cgk~F~~~s 121 (498)
+.|.|. |+++|....
T Consensus 27 ~~~~c~~c~~~f~~~e 42 (154)
T PRK00464 27 RRRECLACGKRFTTFE 42 (154)
T ss_pred eeeeccccCCcceEeE
Confidence 348888 998887653
No 98
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.49 E-value=41 Score=29.74 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=11.3
Q ss_pred ccccCccCcccCChHHHHH
Q 010863 5 RFVCEICNKGFQRDQNLQL 23 (498)
Q Consensus 5 py~C~~CgK~F~~~s~L~~ 23 (498)
|-+|++||-..-....|.|
T Consensus 15 P~~CpiCgLtLVss~HLAR 33 (112)
T TIGR00622 15 PVECPICGLTLILSTHLAR 33 (112)
T ss_pred CCcCCcCCCEEeccchHHH
Confidence 5566666666655555554
No 99
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=41.36 E-value=19 Score=32.42 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=25.8
Q ss_pred ccccCcCCccccchhHHHHHHhhhCCCceecC-CCCccCChHHHH
Q 010863 81 KWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFI 124 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~ 124 (498)
+..|+.||++|... +..|-.|. ||..|.....++
T Consensus 9 Kr~Cp~cg~kFYDL----------nk~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 9 KRICPNTGSKFYDL----------NRRPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred cccCCCcCcccccc----------CCCCccCCCcCCccCcchhhc
Confidence 46899999998643 23789999 999997764433
No 100
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=41.01 E-value=23 Score=38.18 Aligned_cols=33 Identities=27% Similarity=0.725 Sum_probs=17.9
Q ss_pred CcccccCcCCccccchhHHHHHHhh-hCCCceecC-CC
Q 010863 79 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CG 114 (498)
Q Consensus 79 ekp~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cg 114 (498)
..-|.|+.|.+.|.....++ -. -..-.|.|. |+
T Consensus 126 ~~~Y~Cp~C~kkyt~Lea~~---L~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 126 VAGYVCPNCQKKYTSLEALQ---LLDNETGEFHCENCG 160 (436)
T ss_pred cccccCCccccchhhhHHHH---hhcccCceEEEecCC
Confidence 34577777777766544433 12 223456676 65
No 101
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=40.25 E-value=30 Score=31.64 Aligned_cols=13 Identities=31% Similarity=1.019 Sum_probs=7.1
Q ss_pred ccccCcCCccccc
Q 010863 81 KWKCDKCSKRYAV 93 (498)
Q Consensus 81 p~~C~~CgK~F~~ 93 (498)
-|.|+.|++.|..
T Consensus 99 ~Y~Cp~C~~~y~~ 111 (147)
T smart00531 99 YYKCPNCQSKYTF 111 (147)
T ss_pred EEECcCCCCEeeH
Confidence 4555555555553
No 102
>PF14353 CpXC: CpXC protein
Probab=37.76 E-value=32 Score=30.49 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=6.3
Q ss_pred ceecC-CCCccCCh
Q 010863 108 EYRCD-CGTLFSRR 120 (498)
Q Consensus 108 py~C~-Cgk~F~~~ 120 (498)
.|.|+ ||+.|.-.
T Consensus 38 ~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 38 SFTCPSCGHKFRLE 51 (128)
T ss_pred EEECCCCCCceecC
Confidence 35555 55555433
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.63 E-value=23 Score=40.95 Aligned_cols=14 Identities=14% Similarity=0.563 Sum_probs=7.6
Q ss_pred ccCCcccccCcCCc
Q 010863 76 KHGEKKWKCDKCSK 89 (498)
Q Consensus 76 Htgekp~~C~~CgK 89 (498)
|...+...|.+||+
T Consensus 457 H~~~~~L~CH~Cg~ 470 (730)
T COG1198 457 HKATGQLRCHYCGY 470 (730)
T ss_pred ecCCCeeEeCCCCC
Confidence 33334566666665
No 104
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=36.93 E-value=23 Score=24.35 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=6.4
Q ss_pred cccccCcCCc
Q 010863 80 KKWKCDKCSK 89 (498)
Q Consensus 80 kp~~C~~CgK 89 (498)
.|..|++|+.
T Consensus 17 ~p~~CP~Cg~ 26 (34)
T cd00729 17 APEKCPICGA 26 (34)
T ss_pred CCCcCcCCCC
Confidence 4567777764
No 105
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=36.61 E-value=8.4 Score=43.77 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.4
Q ss_pred CCccccCccCcccCChHHHHHHHHhcC
Q 010863 3 TNRFVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 3 ekpy~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
+--|.|.+|+|.|-....+..||++|.
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 346999999999999999999999996
No 106
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=36.24 E-value=13 Score=36.50 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=25.4
Q ss_pred cccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCc
Q 010863 41 EIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK 80 (498)
Q Consensus 41 ~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgek 80 (498)
+..+..|.|+.| +|.|+-..-+++|+...|.|+
T Consensus 72 e~~~~K~~C~lc-------~KlFkg~eFV~KHI~nKH~e~ 104 (214)
T PF04959_consen 72 EEDEDKWRCPLC-------GKLFKGPEFVRKHIFNKHPEK 104 (214)
T ss_dssp SSSSEEEEE-SS-------S-EESSHHHHHHHHHHH-HHH
T ss_pred HHcCCEECCCCC-------CcccCChHHHHHHHhhcCHHH
Confidence 346677999999 899999999999999877653
No 107
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=36.07 E-value=26 Score=37.42 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=20.5
Q ss_pred Ccccc--CccCcccCChHHHHHHHHhcC
Q 010863 4 NRFVC--EICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 4 kpy~C--~~CgK~F~~~s~L~~H~r~H~ 29 (498)
.-|.| +.|+..+..+....+|...|.
T Consensus 270 Ehyhcl~e~C~ykr~~k~DvirH~~~hk 297 (480)
T KOG4377|consen 270 EHYHCLNEYCFYKRGQKNDVIRHVEIHK 297 (480)
T ss_pred hhhcccCccccccccchhhhHHHHHHHh
Confidence 45677 469877777999999999885
No 108
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=35.76 E-value=14 Score=30.03 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.7
Q ss_pred CCCccCC
Q 010863 113 CGTLFSR 119 (498)
Q Consensus 113 Cgk~F~~ 119 (498)
|+.+|..
T Consensus 35 Cg~tF~t 41 (72)
T PRK09678 35 CSATFIT 41 (72)
T ss_pred CCCEEEE
Confidence 5555543
No 109
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=35.03 E-value=28 Score=24.04 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=6.1
Q ss_pred ccccCcCCccc
Q 010863 81 KWKCDKCSKRY 91 (498)
Q Consensus 81 p~~C~~CgK~F 91 (498)
...|+.|+..|
T Consensus 25 ~v~C~~C~~~~ 35 (38)
T TIGR02098 25 KVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEE
Confidence 35566666554
No 110
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=34.49 E-value=33 Score=31.45 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCCceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCCCCCCCCCCC
Q 010863 105 GTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQP 156 (498)
Q Consensus 105 gekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~~C~~sf 156 (498)
....|.|+ |++.|.....+.. . .. +..|.|+.|+...
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~-~-------------d~-~~~f~Cp~Cg~~l 133 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQL-L-------------DM-DGTFTCPRCGEEL 133 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHh-c-------------CC-CCcEECCCCCCEE
Confidence 44579999 9999985433221 1 11 3449999998763
No 111
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=34.32 E-value=31 Score=32.09 Aligned_cols=17 Identities=12% Similarity=0.342 Sum_probs=8.1
Q ss_pred ccccCcCCccccchhHH
Q 010863 81 KWKCDKCSKRYAVQSDW 97 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~L 97 (498)
-|.|+.|+..|.....+
T Consensus 109 ~Y~Cp~c~~r~tf~eA~ 125 (158)
T TIGR00373 109 FFICPNMCVRFTFNEAM 125 (158)
T ss_pred eEECCCCCcEeeHHHHH
Confidence 35555555555444433
No 112
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=33.92 E-value=19 Score=33.39 Aligned_cols=11 Identities=27% Similarity=1.180 Sum_probs=5.4
Q ss_pred ccccCcCCcccc
Q 010863 81 KWKCDKCSKRYA 92 (498)
Q Consensus 81 p~~C~~CgK~F~ 92 (498)
+|.|. |+..|.
T Consensus 117 ~Y~C~-C~q~~l 127 (156)
T COG3091 117 PYRCQ-CQQHYL 127 (156)
T ss_pred eEEee-cCCccc
Confidence 35555 555443
No 113
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=33.46 E-value=36 Score=21.99 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=16.6
Q ss_pred cccCccCcccCChHHHHHHHHh
Q 010863 6 FVCEICNKGFQRDQNLQLHRRG 27 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~ 27 (498)
..|++|++.+ ....+.+|...
T Consensus 2 v~CPiC~~~v-~~~~in~HLD~ 22 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLDS 22 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHHH
Confidence 4699999999 55778888763
No 114
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=33.35 E-value=24 Score=32.09 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.5
Q ss_pred cccCccCcccCChHHHHHHHHhcC
Q 010863 6 FVCEICNKGFQRDQNLQLHRRGHN 29 (498)
Q Consensus 6 y~C~~CgK~F~~~s~L~~H~r~H~ 29 (498)
..|-+|||.|+ .|++|.++|+
T Consensus 77 IicLEDGkkfK---SLKRHL~t~~ 97 (148)
T COG4957 77 IICLEDGKKFK---SLKRHLTTHY 97 (148)
T ss_pred EEEeccCcchH---HHHHHHhccc
Confidence 56999999994 6999999987
No 115
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=33.13 E-value=1.4e+02 Score=32.89 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=6.9
Q ss_pred ccCccCcccCCh
Q 010863 7 VCEICNKGFQRD 18 (498)
Q Consensus 7 ~C~~CgK~F~~~ 18 (498)
.|+.|...|...
T Consensus 115 vc~~c~~~v~S~ 126 (659)
T KOG4140|consen 115 VCNDCNQVVKSQ 126 (659)
T ss_pred hhhhhcccchhh
Confidence 466666666554
No 116
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=32.77 E-value=31 Score=32.80 Aligned_cols=16 Identities=19% Similarity=0.607 Sum_probs=8.1
Q ss_pred ccccCcCCccccchhH
Q 010863 81 KWKCDKCSKRYAVQSD 96 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~ 96 (498)
-|.|+.|++.|.....
T Consensus 117 ~Y~Cp~C~~rytf~eA 132 (178)
T PRK06266 117 FFFCPNCHIRFTFDEA 132 (178)
T ss_pred EEECCCCCcEEeHHHH
Confidence 3555555555554433
No 117
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=32.76 E-value=25 Score=37.87 Aligned_cols=29 Identities=34% Similarity=0.815 Sum_probs=21.4
Q ss_pred ccCcCCccccchhHHHHHHhhhCCCceecC-CCCccCChH
Q 010863 83 KCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRD 121 (498)
Q Consensus 83 ~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s 121 (498)
+|+.||.+ |+..|.+-|+|+ |++.+....
T Consensus 352 ~Cp~Cg~~----------m~S~G~~g~rC~kCg~~~~~~~ 381 (421)
T COG1571 352 VCPRCGGR----------MKSAGRNGFRCKKCGTRARETL 381 (421)
T ss_pred CCCccCCc----------hhhcCCCCcccccccccCCccc
Confidence 69999875 444555689999 998887653
No 118
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=32.26 E-value=21 Score=32.39 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=13.0
Q ss_pred ccccCccCcccCChH
Q 010863 5 RFVCEICNKGFQRDQ 19 (498)
Q Consensus 5 py~C~~CgK~F~~~s 19 (498)
|++|-.||+.|.+-+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 689999999998765
No 119
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.82 E-value=26 Score=33.08 Aligned_cols=22 Identities=32% Similarity=0.862 Sum_probs=15.6
Q ss_pred ccccCcCCccccchhHHHHHHhhhCCCceecC-CC
Q 010863 81 KWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CG 114 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cg 114 (498)
-|.|.+||..+. |+-|-.|+ |+
T Consensus 134 ~~vC~vCGy~~~------------ge~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGYTHE------------GEAPEVCPICG 156 (166)
T ss_pred EEEcCCCCCccc------------CCCCCcCCCCC
Confidence 588888877543 45677888 87
No 120
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=31.72 E-value=24 Score=29.99 Aligned_cols=12 Identities=42% Similarity=1.154 Sum_probs=7.1
Q ss_pred ccccCcCCcccc
Q 010863 81 KWKCDKCSKRYA 92 (498)
Q Consensus 81 p~~C~~CgK~F~ 92 (498)
.|.|..|++.|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PTZ00255 54 IWRCKGCKKTVA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 466666666554
No 121
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=31.38 E-value=87 Score=35.13 Aligned_cols=13 Identities=0% Similarity=-0.053 Sum_probs=7.0
Q ss_pred HHHHHhcccccCC
Q 010863 296 QKAAQMGATMSSS 308 (498)
Q Consensus 296 q~a~~~~~~~s~~ 308 (498)
-.+++|.+.|+.-
T Consensus 376 ~~~~~~q~p~~g~ 388 (757)
T KOG4368|consen 376 WNSQHEQPPWGGG 388 (757)
T ss_pred cccccccCcccCC
Confidence 3455565666553
No 122
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=30.96 E-value=49 Score=33.20 Aligned_cols=58 Identities=22% Similarity=0.480 Sum_probs=34.8
Q ss_pred cCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccchhHHHHHHhhhCCCceecC-CCCccCC
Q 010863 43 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSR 119 (498)
Q Consensus 43 ~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~ 119 (498)
.++-|.|..| +.... + +.-....--+|..|.+.|.--.. -+.-|.-.|.|. |+..|.-
T Consensus 109 ~drqFaC~~C-------d~~Ww-----R---rvp~rKeVSRCr~C~~rYDPVP~----dkmwG~aef~C~~C~h~F~G 167 (278)
T PF15135_consen 109 VDRQFACSSC-------DHMWW-----R---RVPQRKEVSRCRKCRKRYDPVPC----DKMWGIAEFHCPKCRHNFRG 167 (278)
T ss_pred cceeeecccc-------chHHH-----h---ccCcccccccccccccccCCCcc----ccccceeeeecccccccchh
Confidence 4578999999 43221 1 12222233578889888754331 112456679998 9999974
No 123
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=30.87 E-value=20 Score=26.56 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=16.2
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCc
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK 89 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK 89 (498)
.|.|..| +..|..... + .. +....|+.|+.
T Consensus 5 ey~C~~C-------g~~fe~~~~----~--~~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 5 EYRCTAC-------GHRFEVLQK----M--SD-DPLATCPECGG 34 (52)
T ss_pred EEEeCCC-------CCEeEEEEe----c--CC-CCCCCCCCCCC
Confidence 4677777 666653211 1 11 34456777775
No 124
>PRK04023 DNA polymerase II large subunit; Validated
Probab=30.77 E-value=45 Score=39.71 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=5.9
Q ss_pred ceecC-CCCc
Q 010863 108 EYRCD-CGTL 116 (498)
Q Consensus 108 py~C~-Cgk~ 116 (498)
+|.|+ |+..
T Consensus 663 ~y~CPKCG~E 672 (1121)
T PRK04023 663 EDECEKCGRE 672 (1121)
T ss_pred CCcCCCCCCC
Confidence 46687 7754
No 125
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=30.76 E-value=55 Score=34.44 Aligned_cols=87 Identities=17% Similarity=0.327 Sum_probs=0.0
Q ss_pred CccccCccCcccCChHHHHHH--HHhcCCCccccc---------------------------------------------
Q 010863 4 NRFVCEICNKGFQRDQNLQLH--RRGHNLPWKLKQ--------------------------------------------- 36 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s~L~~H--~r~H~~p~~c~~--------------------------------------------- 36 (498)
+.+-|..|++.|.+..-+..| -+.|.+..+-.+
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~aei~~l 316 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKAEISLL 316 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred -----------------------cccccccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCC-cccc
Q 010863 37 -----------------------RTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCS-KRYA 92 (498)
Q Consensus 37 -----------------------~~~~~~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~Cg-K~F~ 92 (498)
..+.|+-.++|.-+.- .-...-..-|.+ .|--++.|.|++|| +.+.
T Consensus 317 ~r~~~~~at~S~e~EGaeq~d~eQ~DE~~~~k~fdmPLG-------~DG~PmP~WL~k---lhgLd~ef~CEICgNyvy~ 386 (470)
T COG5188 317 SRRKKQPATKSSEKEGAEQVDGEQRDEHVSGKSFDMPLG-------PDGLPMPRWLCK---LHGLDIEFECEICGNYVYY 386 (470)
T ss_pred HHHhhccCCCchhhcccccccccccchhhccCcccCCCC-------CCCCCCchHHHH---hcCCCcceeeeeccccccc
Q ss_pred chhHHHHH
Q 010863 93 VQSDWKAH 100 (498)
Q Consensus 93 ~~s~L~~H 100 (498)
-+..+.+|
T Consensus 387 GR~~FdrH 394 (470)
T COG5188 387 GRDRFDRH 394 (470)
T ss_pred chHHHHhh
No 126
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=29.62 E-value=22 Score=24.70 Aligned_cols=31 Identities=19% Similarity=0.437 Sum_probs=16.7
Q ss_pred ceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCcc
Q 010863 46 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKR 90 (498)
Q Consensus 46 ~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~ 90 (498)
.|+|+.| ++.|...... . ......|+.||..
T Consensus 5 ~y~C~~C-------g~~fe~~~~~------~-~~~~~~CP~Cg~~ 35 (41)
T smart00834 5 EYRCEDC-------GHTFEVLQKI------S-DDPLATCPECGGD 35 (41)
T ss_pred EEEcCCC-------CCEEEEEEec------C-CCCCCCCCCCCCc
Confidence 4677777 5655432221 1 1345567777763
No 127
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=29.36 E-value=20 Score=30.43 Aligned_cols=11 Identities=64% Similarity=1.751 Sum_probs=7.4
Q ss_pred cccCcCCcccc
Q 010863 82 WKCDKCSKRYA 92 (498)
Q Consensus 82 ~~C~~CgK~F~ 92 (498)
|.|..|++.|.
T Consensus 54 W~C~~C~~~~A 64 (90)
T PF01780_consen 54 WKCKKCGKKFA 64 (90)
T ss_dssp EEETTTTEEEE
T ss_pred eecCCCCCEEe
Confidence 67777776664
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=29.30 E-value=30 Score=40.02 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=4.9
Q ss_pred CCCCCCCCCC
Q 010863 146 PILSSSSHHQ 155 (498)
Q Consensus 146 p~~C~~C~~s 155 (498)
|..|+.|+..
T Consensus 475 p~~Cp~Cgs~ 484 (730)
T COG1198 475 PQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCC
Confidence 4445555443
No 129
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=29.14 E-value=26 Score=29.80 Aligned_cols=12 Identities=42% Similarity=1.340 Sum_probs=7.0
Q ss_pred ccccCcCCcccc
Q 010863 81 KWKCDKCSKRYA 92 (498)
Q Consensus 81 p~~C~~CgK~F~ 92 (498)
.|.|..|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (91)
T TIGR00280 53 IWTCRKCGAKFA 64 (91)
T ss_pred EEEcCCCCCEEe
Confidence 366666666554
No 130
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=28.42 E-value=33 Score=32.68 Aligned_cols=37 Identities=11% Similarity=0.323 Sum_probs=27.3
Q ss_pred ccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccch
Q 010863 42 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQ 94 (498)
Q Consensus 42 ~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~~ 94 (498)
....-|.|+.| ++.|.....+. .-|.|+.||.....-
T Consensus 113 ~~~~~Y~Cp~C-------~~rytf~eA~~---------~~F~Cp~Cg~~L~~~ 149 (178)
T PRK06266 113 ENNMFFFCPNC-------HIRFTFDEAME---------YGFRCPQCGEMLEEY 149 (178)
T ss_pred cCCCEEECCCC-------CcEEeHHHHhh---------cCCcCCCCCCCCeec
Confidence 35567999999 78887776653 369999999866543
No 131
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=28.24 E-value=32 Score=29.27 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=18.8
Q ss_pred CccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCCC
Q 010863 4 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPN 53 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C~ 53 (498)
+|-.|..||..|.... -+++..|+.|.
T Consensus 57 ~Pa~CkkCGfef~~~~-----------------------ik~pSRCP~CK 83 (97)
T COG3357 57 RPARCKKCGFEFRDDK-----------------------IKKPSRCPKCK 83 (97)
T ss_pred cChhhcccCccccccc-----------------------cCCcccCCcch
Confidence 4667888888776521 24688999994
No 132
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.10 E-value=19 Score=41.33 Aligned_cols=14 Identities=14% Similarity=0.427 Sum_probs=8.4
Q ss_pred ccCCcccccCcCCc
Q 010863 76 KHGEKKWKCDKCSK 89 (498)
Q Consensus 76 Htgekp~~C~~CgK 89 (498)
|...+...|.+||+
T Consensus 405 h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 405 PSAGGTPRCRWCGR 418 (665)
T ss_pred ecCCCeeECCCCcC
Confidence 33444567777775
No 133
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.94 E-value=29 Score=30.50 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=9.2
Q ss_pred CcccccCcCCcccc
Q 010863 79 EKKWKCDKCSKRYA 92 (498)
Q Consensus 79 ekp~~C~~CgK~F~ 92 (498)
..|..|++|||.|.
T Consensus 24 rdPiVsPytG~s~P 37 (129)
T COG4530 24 RDPIVSPYTGKSYP 37 (129)
T ss_pred CCccccCcccccch
Confidence 35667777777773
No 134
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=27.49 E-value=38 Score=31.50 Aligned_cols=36 Identities=11% Similarity=0.411 Sum_probs=27.6
Q ss_pred ccCcceeCCCCCCCCCCCCCccCChhhHhhhhhhccCCcccccCcCCccccc
Q 010863 42 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAV 93 (498)
Q Consensus 42 ~~~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H~r~Htgekp~~C~~CgK~F~~ 93 (498)
....-|.|+.| +..|.....+. .-|.|+.||.....
T Consensus 105 ~~~~~Y~Cp~c-------~~r~tf~eA~~---------~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 105 TNNMFFICPNM-------CVRFTFNEAME---------LNFTCPRCGAMLDY 140 (158)
T ss_pred cCCCeEECCCC-------CcEeeHHHHHH---------cCCcCCCCCCEeee
Confidence 35677999999 78887777764 25999999986543
No 135
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=27.26 E-value=15 Score=38.29 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhhccCCcccccCcCCccccchhHHHHHHhhhCCCceec------C-CCCccCChHHHHHHHHHh-----------hhc
Q 010863 72 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRC------D-CGTLFSRRDSFITHRAFC-----------DAL 133 (498)
Q Consensus 72 H~r~Htgekp~~C~~CgK~F~~~s~L~~H~r~hgekpy~C------~-Cgk~F~~~s~L~~H~~~h-----------~~~ 133 (498)
++..|.+. .|+-|+|.-.+. +.|+| + |..-|.+...--.|..-| .-.
T Consensus 2 ~~~rHe~v---~CdgC~k~~~t~------------rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~dfeL~ 66 (381)
T KOG1280|consen 2 LTSRHEGV---SCDGCGKTAFTF------------RRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRVDFELY 66 (381)
T ss_pred CCCCcCCc---eeccccccceee------------eeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeeccceeeE
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCccccccchhhhh
Q 010863 134 AEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQ 188 (498)
Q Consensus 134 ~~~s~r~h~~~kp~~C~~C~~sf~~~s~l~sH~~~~~p~~~~~~~~~~~~k~eqq 188 (498)
.....-.|..+..|.|+.|++.-.+...+..|+...++......+..+....++.
T Consensus 67 f~Ge~i~~y~~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~~~ 121 (381)
T KOG1280|consen 67 FGGEPISHYDPQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANPEM 121 (381)
T ss_pred ecCccccccccccccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCccc
No 136
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.75 E-value=23 Score=29.06 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=20.8
Q ss_pred CccccCccCcccCChHHHHHHHHhcCCCccccccccccccCcceeCCCC
Q 010863 4 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEP 52 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C 52 (498)
-.|+|..|+..| .+..|++ ..-.-.|++|
T Consensus 11 Y~Y~c~~cg~~~----dvvq~~~----------------ddplt~ce~c 39 (82)
T COG2331 11 YSYECTECGNRF----DVVQAMT----------------DDPLTTCEEC 39 (82)
T ss_pred eEEeecccchHH----HHHHhcc----------------cCccccChhh
Confidence 469999999876 5666654 3345679999
No 137
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=26.18 E-value=55 Score=23.48 Aligned_cols=25 Identities=20% Similarity=0.529 Sum_probs=19.6
Q ss_pred ccccCccCcccCC--hHHHHHHHHhcC
Q 010863 5 RFVCEICNKGFQR--DQNLQLHRRGHN 29 (498)
Q Consensus 5 py~C~~CgK~F~~--~s~L~~H~r~H~ 29 (498)
.-+|+.||..|.. ...-+.|.+.|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 3689999999886 466788888774
No 138
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=25.38 E-value=31 Score=29.30 Aligned_cols=12 Identities=42% Similarity=1.370 Sum_probs=6.8
Q ss_pred ccccCcCCcccc
Q 010863 81 KWKCDKCSKRYA 92 (498)
Q Consensus 81 p~~C~~CgK~F~ 92 (498)
.|.|..|++.|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PRK03976 54 IWECRKCGAKFA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 356666666554
No 139
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=25.21 E-value=28 Score=24.74 Aligned_cols=23 Identities=22% Similarity=0.613 Sum_probs=13.1
Q ss_pred HhhhhhhccCCcccccCcCCccc
Q 010863 69 IKKHFCRKHGEKKWKCDKCSKRY 91 (498)
Q Consensus 69 Lk~H~r~Htgekp~~C~~CgK~F 91 (498)
|.-......+.+.|.|..|+..-
T Consensus 12 lNp~~~~~~~~~~w~C~~C~~~N 34 (40)
T PF04810_consen 12 LNPFCQFDDGGKTWICNFCGTKN 34 (40)
T ss_dssp S-TTSEEETTTTEEEETTT--EE
T ss_pred ECCcceEcCCCCEEECcCCCCcC
Confidence 33444555566788888887643
No 140
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=25.01 E-value=55 Score=25.63 Aligned_cols=8 Identities=50% Similarity=1.510 Sum_probs=4.3
Q ss_pred CceecC-CC
Q 010863 107 REYRCD-CG 114 (498)
Q Consensus 107 kpy~C~-Cg 114 (498)
.+|.|+ ||
T Consensus 47 ~~Y~CP~CG 55 (59)
T PRK14890 47 NPYTCPKCG 55 (59)
T ss_pred CceECCCCC
Confidence 345565 55
No 141
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.97 E-value=42 Score=26.48 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=23.0
Q ss_pred cccCccCcc-cCChHHHHHHHHhcCCCccccccccccccCcceeCCCC
Q 010863 6 FVCEICNKG-FQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEP 52 (498)
Q Consensus 6 y~C~~CgK~-F~~~s~L~~H~r~H~~p~~c~~~~~~~~~~k~y~C~~C 52 (498)
.+|-+|++. |-+...+..-+.... ..+.|.|++|
T Consensus 3 vkCiiCd~v~~iD~rt~~tKrLrN~-------------PIrtymC~eC 37 (68)
T COG4896 3 VKCIICDRVDEIDNRTFKTKRLRNK-------------PIRTYMCPEC 37 (68)
T ss_pred ceEEEecceeeecchhHHHHHhhCC-------------CceeEechhh
Confidence 578899765 555555655443333 5678999999
No 142
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.35 E-value=34 Score=24.89 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=6.5
Q ss_pred ccccCcCCccc
Q 010863 81 KWKCDKCSKRY 91 (498)
Q Consensus 81 p~~C~~CgK~F 91 (498)
.+.|++||..+
T Consensus 21 ~~~Cp~CG~~~ 31 (46)
T PRK00398 21 GVRCPYCGYRI 31 (46)
T ss_pred ceECCCCCCeE
Confidence 45666666544
No 143
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.98 E-value=46 Score=36.83 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=11.1
Q ss_pred hhhccCCcccccCcCCcc
Q 010863 73 FCRKHGEKKWKCDKCSKR 90 (498)
Q Consensus 73 ~r~Htgekp~~C~~CgK~ 90 (498)
+..|..+....|.+||+.
T Consensus 232 l~~h~~~~~l~Ch~Cg~~ 249 (505)
T TIGR00595 232 LTYHKKEGKLRCHYCGYQ 249 (505)
T ss_pred eEEecCCCeEEcCCCcCc
Confidence 344445556778888764
No 144
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=23.89 E-value=19 Score=32.80 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=7.4
Q ss_pred cCcceeCCCC
Q 010863 43 RKKVYVCPEP 52 (498)
Q Consensus 43 ~~k~y~C~~C 52 (498)
..+.|+|.+|
T Consensus 77 d~~lYeCnIC 86 (140)
T PF05290_consen 77 DPKLYECNIC 86 (140)
T ss_pred CCCceeccCc
Confidence 4477888888
No 145
>PHA00626 hypothetical protein
Probab=23.74 E-value=37 Score=26.31 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.5
Q ss_pred CccccCccCcccCChH
Q 010863 4 NRFVCEICNKGFQRDQ 19 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s 19 (498)
.+|+|+.||..|....
T Consensus 22 nrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 22 DDYVCCDCGYNDSKDA 37 (59)
T ss_pred cceEcCCCCCeechhh
Confidence 5899999999998653
No 146
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=23.70 E-value=42 Score=34.75 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=23.5
Q ss_pred cCCcccccCc---CCccccchhHHHHHHhh-hC
Q 010863 77 HGEKKWKCDK---CSKRYAVQSDWKAHSKT-CG 105 (498)
Q Consensus 77 tgekp~~C~~---CgK~F~~~s~L~~H~r~-hg 105 (498)
+.+--|.|.. |.++|..+.+|..|+.. |+
T Consensus 140 ~~g~iFmC~~~~GC~RTyLsqrDlqAHInhrH~ 172 (389)
T KOG2932|consen 140 MMGGIFMCAAPHGCLRTYLSQRDLQAHINHRHG 172 (389)
T ss_pred cccceEEeecchhHHHHHhhHHHHHHHhhhhhc
Confidence 4556789965 99999999999999876 54
No 147
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=22.98 E-value=47 Score=23.49 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=9.4
Q ss_pred CccccCccCcccCChH--HHHHHHH
Q 010863 4 NRFVCEICNKGFQRDQ--NLQLHRR 26 (498)
Q Consensus 4 kpy~C~~CgK~F~~~s--~L~~H~r 26 (498)
++|-|+.|.+.|...+ .-+.|.+
T Consensus 2 ~ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 2 PRYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp -S-B-TTT--B-S--SHHHHHHHT-
T ss_pred cCeecccccceecCCChHHHHHhhc
Confidence 6799999999995443 3355544
No 148
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=22.86 E-value=21 Score=40.74 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=22.2
Q ss_pred CceecC-CCCccCChHHHHHHHHHhh
Q 010863 107 REYRCD-CGTLFSRRDSFITHRAFCD 131 (498)
Q Consensus 107 kpy~C~-Cgk~F~~~s~L~~H~~~h~ 131 (498)
..|.|+ |+|.|-.-.++..|||+|.
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr 816 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHR 816 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHH
Confidence 359999 9999999999999998874
No 149
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.62 E-value=35 Score=32.62 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=9.3
Q ss_pred cCcceeCCCCCC
Q 010863 43 RKKVYVCPEPNC 54 (498)
Q Consensus 43 ~~k~y~C~~C~C 54 (498)
.+..|.|++|.|
T Consensus 128 ~~~~~~CPiCl~ 139 (187)
T KOG0320|consen 128 KEGTYKCPICLD 139 (187)
T ss_pred cccccCCCceec
Confidence 556699999954
No 150
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.55 E-value=29 Score=38.31 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=13.3
Q ss_pred hhhhhhccCCcccccCcCCcc
Q 010863 70 KKHFCRKHGEKKWKCDKCSKR 90 (498)
Q Consensus 70 k~H~r~Htgekp~~C~~CgK~ 90 (498)
.-|.+-+....++.|+.|+..
T Consensus 242 ~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 242 RCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred EcCCCcCcCCCCCCCCCCCCC
Confidence 333334455667899999764
No 151
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=22.49 E-value=20 Score=37.67 Aligned_cols=55 Identities=22% Similarity=0.471 Sum_probs=0.0
Q ss_pred cceeCCCCCCCCCCCCCccCChhhHhhh---hhhccCCcc-cccCcCCccccchhHHHHHHhhhCCCceecC-CC
Q 010863 45 KVYVCPEPNCVHHDPSRALGDLTGIKKH---FCRKHGEKK-WKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CG 114 (498)
Q Consensus 45 k~y~C~~C~C~~~~~~k~F~~~s~Lk~H---~r~Htgekp-~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cg 114 (498)
+.+.|..|. ...|......+.+ +..|...|. |+|..|+++.....-|-.+ .|. |+
T Consensus 251 kav~C~~C~------yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt~sl~r~P~~---------~C~~Cg 310 (344)
T PF09332_consen 251 KAVTCKQCK------YTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRTISLERLPKK---------HCSNCG 310 (344)
T ss_dssp EEEEETTT--------EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EEEESSSS--S-----------TTT-
T ss_pred EEEEcCCCC------CcccCcchhHHhcCCceEEeeeeeeeEECCCCCCeeeecccCCCC---------CCCcCC
No 152
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=22.43 E-value=80 Score=24.31 Aligned_cols=16 Identities=25% Similarity=0.656 Sum_probs=11.5
Q ss_pred CCCccccCccCcccCC
Q 010863 2 ATNRFVCEICNKGFQR 17 (498)
Q Consensus 2 gekpy~C~~CgK~F~~ 17 (498)
.....+|..||+.|..
T Consensus 2 ~~~~~~C~~Cg~~~~~ 17 (54)
T PF14446_consen 2 NYEGCKCPVCGKKFKD 17 (54)
T ss_pred CccCccChhhCCcccC
Confidence 3445678999988854
No 153
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=22.27 E-value=39 Score=30.49 Aligned_cols=17 Identities=29% Similarity=1.042 Sum_probs=13.0
Q ss_pred CCcccccCcCCccccch
Q 010863 78 GEKKWKCDKCSKRYAVQ 94 (498)
Q Consensus 78 gekp~~C~~CgK~F~~~ 94 (498)
+...|+|..|++.|...
T Consensus 50 ~~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 50 GHQRYKCKSCGSTFTVE 66 (129)
T ss_pred cccccccCCcCcceeee
Confidence 35568999999888755
No 154
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=21.94 E-value=47 Score=34.43 Aligned_cols=13 Identities=23% Similarity=0.670 Sum_probs=7.3
Q ss_pred cCCcccccCcCCc
Q 010863 77 HGEKKWKCDKCSK 89 (498)
Q Consensus 77 tgekp~~C~~CgK 89 (498)
.|.|-..|..|+.
T Consensus 206 ~G~RyL~CslC~t 218 (305)
T TIGR01562 206 TGLRYLSCSLCAT 218 (305)
T ss_pred CCceEEEcCCCCC
Confidence 4455556666654
No 155
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=21.84 E-value=65 Score=23.55 Aligned_cols=12 Identities=25% Similarity=0.697 Sum_probs=7.5
Q ss_pred cccccCcCCccc
Q 010863 80 KKWKCDKCSKRY 91 (498)
Q Consensus 80 kp~~C~~CgK~F 91 (498)
.+.+|++||...
T Consensus 18 ~~irC~~CG~rI 29 (44)
T smart00659 18 DVVRCRECGYRI 29 (44)
T ss_pred CceECCCCCceE
Confidence 456777777543
No 156
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=21.55 E-value=73 Score=25.05 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=14.8
Q ss_pred ccccCcCCccccchhHHHHHHhhhCCCceecC-CCC
Q 010863 81 KWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGT 115 (498)
Q Consensus 81 p~~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk 115 (498)
.|.|+.||+.-..+.. +-..-..+|.|+ ||.
T Consensus 27 ~F~CPnCGe~~I~Rc~----~CRk~g~~Y~Cp~CGF 58 (61)
T COG2888 27 KFPCPNCGEVEIYRCA----KCRKLGNPYRCPKCGF 58 (61)
T ss_pred EeeCCCCCceeeehhh----hHHHcCCceECCCcCc
Confidence 4677777754332211 111123567776 663
No 157
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.02 E-value=36 Score=36.90 Aligned_cols=39 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred CcceeCCCCCCCCCCCCCccCChhhHhhh-hhhccCCcccccCcCCc
Q 010863 44 KKVYVCPEPNCVHHDPSRALGDLTGIKKH-FCRKHGEKKWKCDKCSK 89 (498)
Q Consensus 44 ~k~y~C~~C~C~~~~~~k~F~~~s~Lk~H-~r~Htgekp~~C~~CgK 89 (498)
-..|.|+-- ++.+..-.--.+| .+.|+-..|-=|++||.
T Consensus 90 fVtF~CPGa-------dkg~dtDdpr~kHkf~~~tYssPTFCDhCGs 129 (683)
T KOG0696|consen 90 FVTFSCPGA-------DKGPDTDDPRSKHKFKIHTYSSPTFCDHCGS 129 (683)
T ss_pred eEEEECCCC-------CCCCCCCCcccccceeeeecCCCchhhhHHH
Confidence 445666654 5555554444455 34555555556666663
No 158
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=20.61 E-value=1.3e+02 Score=21.87 Aligned_cols=11 Identities=27% Similarity=1.056 Sum_probs=7.4
Q ss_pred CcccccCcCCc
Q 010863 79 EKKWKCDKCSK 89 (498)
Q Consensus 79 ekp~~C~~CgK 89 (498)
...|+|..|++
T Consensus 35 ~~~~~C~~C~~ 45 (46)
T PF12760_consen 35 RGRYRCKACRK 45 (46)
T ss_pred CCeEECCCCCC
Confidence 45677777765
No 159
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=20.45 E-value=59 Score=33.59 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=39.1
Q ss_pred CcccccCcCCccccchhHHHHHHhh-hCCCceecC-----CCCccCChHHHHHHHHHhhhccccccccccCCCCCCCCCC
Q 010863 79 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-----CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSS 152 (498)
Q Consensus 79 ekp~~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-----Cgk~F~~~s~L~~H~~~h~~~~~~s~r~h~~~kp~~C~~C 152 (498)
++..+|+.|...+.... -++|.. -....+.|+ |.+.|.+... ..|.+ .-. -.||.|+.-
T Consensus 78 ~~~~~CP~Cr~~~g~~R--~~amEkV~e~~~vpC~~~~~GC~~~~~Y~~~-~~HE~-----------~C~-f~~~~CP~p 142 (299)
T KOG3002|consen 78 KVSNKCPTCRLPIGNIR--CRAMEKVAEAVLVPCKNAKLGCTKSFPYGEK-SKHEK-----------VCE-FRPCSCPVP 142 (299)
T ss_pred hhcccCCccccccccHH--HHHHHHHHHhceecccccccCCceeeccccc-ccccc-----------ccc-cCCcCCCCC
Confidence 56789999998887543 344444 555677885 9999988765 45552 222 367777654
No 160
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=20.14 E-value=58 Score=24.56 Aligned_cols=11 Identities=27% Similarity=0.845 Sum_probs=6.0
Q ss_pred cccccCcCCcc
Q 010863 80 KKWKCDKCSKR 90 (498)
Q Consensus 80 kp~~C~~CgK~ 90 (498)
....|++||..
T Consensus 23 ~~irCp~Cg~r 33 (49)
T COG1996 23 RGIRCPYCGSR 33 (49)
T ss_pred CceeCCCCCcE
Confidence 34566666543
Done!