Query 010864
Match_columns 498
No_of_seqs 518 out of 3063
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:26:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 2.8E-25 6.1E-30 225.5 17.5 190 111-311 195-438 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 5.8E-23 1.3E-27 208.8 19.7 195 110-351 262-493 (966)
3 TIGR00990 3a0801s09 mitochondr 99.8 5.6E-18 1.2E-22 185.7 26.4 178 134-348 341-576 (615)
4 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-18 1.3E-22 185.5 24.2 169 136-348 306-501 (615)
5 KOG1126 DNA-binding cell divis 99.8 3.7E-18 8.1E-23 176.5 16.2 175 131-359 428-602 (638)
6 PRK11189 lipoprotein NlpI; Pro 99.8 5.7E-17 1.2E-21 161.5 22.3 179 134-357 74-280 (296)
7 PRK09782 bacteriophage N4 rece 99.7 1.5E-16 3.2E-21 179.6 25.0 182 112-348 521-711 (987)
8 KOG1155 Anaphase-promoting com 99.7 1.1E-16 2.3E-21 159.2 20.7 156 134-343 340-495 (559)
9 KOG1125 TPR repeat-containing 99.7 2.3E-17 4.9E-22 168.3 16.0 167 133-346 294-530 (579)
10 PRK12370 invasion protein regu 99.7 2.7E-16 6E-21 169.9 25.2 159 140-352 320-479 (553)
11 PRK15174 Vi polysaccharide exp 99.7 3.4E-16 7.3E-21 172.1 25.9 200 112-349 88-353 (656)
12 PRK15174 Vi polysaccharide exp 99.7 4.8E-16 1E-20 170.9 25.1 183 112-348 189-386 (656)
13 COG3063 PilF Tfp pilus assembl 99.7 6.1E-16 1.3E-20 142.0 21.2 143 133-310 44-188 (250)
14 PRK15359 type III secretion sy 99.7 8.7E-17 1.9E-21 142.8 15.3 128 144-309 13-140 (144)
15 PRK12370 invasion protein regu 99.7 3.1E-16 6.6E-21 169.5 22.4 176 137-357 274-450 (553)
16 PLN02789 farnesyltranstransfer 99.7 5.6E-16 1.2E-20 154.9 21.2 191 111-352 31-221 (320)
17 TIGR02521 type_IV_pilW type IV 99.7 2E-15 4.4E-20 142.5 24.2 164 134-351 41-206 (234)
18 KOG1126 DNA-binding cell divis 99.7 1.6E-16 3.4E-21 164.5 16.4 184 112-349 433-626 (638)
19 PRK09782 bacteriophage N4 rece 99.7 1.3E-15 2.9E-20 171.9 23.1 182 112-348 554-745 (987)
20 PRK11447 cellulose synthase su 99.7 8.2E-15 1.8E-19 171.2 25.3 190 134-354 279-535 (1157)
21 TIGR02521 type_IV_pilW type IV 99.7 3E-14 6.5E-19 134.4 23.6 177 114-344 45-233 (234)
22 KOG1173 Anaphase-promoting com 99.7 7.2E-15 1.6E-19 149.6 19.8 189 135-356 323-531 (611)
23 PRK15359 type III secretion sy 99.7 2.3E-15 5.1E-20 133.6 14.4 125 192-359 13-137 (144)
24 COG3063 PilF Tfp pilus assembl 99.6 4.8E-15 1E-19 136.1 16.1 138 158-349 35-174 (250)
25 PRK11447 cellulose synthase su 99.6 2.7E-14 5.8E-19 166.9 26.4 189 112-311 363-653 (1157)
26 KOG1155 Anaphase-promoting com 99.6 3.7E-14 7.9E-19 141.3 22.0 193 112-358 342-551 (559)
27 KOG0547 Translocase of outer m 99.6 1.5E-14 3.2E-19 144.9 19.2 192 113-348 339-571 (606)
28 PRK11788 tetratricopeptide rep 99.6 9.4E-14 2E-18 143.5 24.6 165 135-354 152-322 (389)
29 TIGR02917 PEP_TPR_lipo putativ 99.6 1.6E-13 3.4E-18 155.2 27.0 171 133-350 474-671 (899)
30 PRK10370 formate-dependent nit 99.6 2.9E-14 6.2E-19 133.4 17.3 126 136-296 51-179 (198)
31 TIGR02917 PEP_TPR_lipo putativ 99.6 1.3E-13 2.9E-18 155.8 26.2 187 134-357 577-813 (899)
32 PRK11788 tetratricopeptide rep 99.6 1.4E-13 3.1E-18 142.2 24.0 185 112-350 81-285 (389)
33 PRK11189 lipoprotein NlpI; Pro 99.6 5.9E-14 1.3E-18 139.9 20.1 125 137-296 39-167 (296)
34 PLN02789 farnesyltranstransfer 99.6 1.3E-13 2.8E-18 137.9 21.6 194 115-349 52-256 (320)
35 PRK10370 formate-dependent nit 99.6 1.3E-13 2.8E-18 129.0 17.8 121 188-348 55-178 (198)
36 TIGR03302 OM_YfiO outer membra 99.6 2.4E-13 5.3E-18 130.7 19.9 165 134-345 43-234 (235)
37 KOG0547 Translocase of outer m 99.6 9.5E-14 2.1E-18 139.2 16.9 159 134-346 336-494 (606)
38 KOG1174 Anaphase-promoting com 99.5 1E-12 2.2E-17 129.4 22.1 178 135-360 311-517 (564)
39 PRK15179 Vi polysaccharide bio 99.5 8.5E-13 1.8E-17 144.1 23.8 151 144-348 72-222 (694)
40 PF13429 TPR_15: Tetratricopep 99.5 1E-13 2.2E-18 137.1 13.5 155 134-342 120-276 (280)
41 KOG0553 TPR repeat-containing 99.5 1E-13 2.2E-18 132.2 12.7 109 134-267 91-199 (304)
42 TIGR02552 LcrH_SycD type III s 99.5 5.7E-13 1.2E-17 116.5 15.4 119 145-298 4-122 (135)
43 PRK10049 pgaA outer membrane p 99.5 2.3E-12 4.9E-17 144.6 23.9 186 113-352 250-465 (765)
44 KOG0624 dsRNA-activated protei 99.5 1.7E-12 3.8E-17 125.1 19.1 180 134-360 48-273 (504)
45 TIGR02552 LcrH_SycD type III s 99.5 7.2E-13 1.6E-17 115.9 15.0 125 193-357 4-128 (135)
46 KOG0553 TPR repeat-containing 99.5 3.3E-13 7.1E-18 128.8 13.5 118 158-310 81-198 (304)
47 KOG1173 Anaphase-promoting com 99.5 1.1E-12 2.3E-17 133.9 17.0 208 115-369 259-510 (611)
48 KOG1129 TPR repeat-containing 99.5 7.6E-13 1.7E-17 126.8 14.4 179 132-358 231-439 (478)
49 COG5010 TadD Flp pilus assembl 99.5 5.2E-12 1.1E-16 118.6 19.0 166 141-361 50-215 (257)
50 KOG1840 Kinesin light chain [C 99.5 1.8E-12 3.9E-17 135.6 17.1 165 133-344 208-397 (508)
51 PF13429 TPR_15: Tetratricopep 99.4 8.3E-13 1.8E-17 130.5 13.5 188 114-356 58-256 (280)
52 KOG0548 Molecular co-chaperone 99.4 6.1E-12 1.3E-16 128.0 19.7 182 134-356 234-468 (539)
53 PRK10049 pgaA outer membrane p 99.4 5.2E-12 1.1E-16 141.7 20.5 140 135-310 26-165 (765)
54 KOG1129 TPR repeat-containing 99.4 7.6E-13 1.6E-17 126.8 11.4 188 112-353 268-468 (478)
55 KOG1840 Kinesin light chain [C 99.4 5E-12 1.1E-16 132.3 18.6 172 111-310 210-424 (508)
56 KOG2002 TPR-containing nuclear 99.4 6.9E-12 1.5E-16 134.8 19.8 204 116-360 146-388 (1018)
57 PRK15179 Vi polysaccharide bio 99.4 5.1E-12 1.1E-16 138.1 19.0 133 134-301 96-228 (694)
58 PF06552 TOM20_plant: Plant sp 99.4 1.3E-12 2.8E-17 116.4 11.6 121 231-359 5-125 (186)
59 KOG2076 RNA polymerase III tra 99.4 3.4E-11 7.4E-16 128.8 23.4 210 135-367 150-502 (895)
60 KOG1125 TPR repeat-containing 99.4 3.5E-12 7.5E-17 130.8 13.8 152 162-357 289-507 (579)
61 PRK15363 pathogenicity island 99.4 1.1E-11 2.4E-16 109.2 14.7 107 150-291 26-133 (157)
62 TIGR00540 hemY_coli hemY prote 99.4 2.8E-10 6E-15 118.8 26.3 209 112-357 96-380 (409)
63 KOG2003 TPR repeat-containing 99.4 6.6E-11 1.4E-15 117.7 20.0 173 136-352 502-698 (840)
64 COG5010 TadD Flp pilus assembl 99.4 2.8E-11 6E-16 113.7 16.4 142 134-310 76-217 (257)
65 KOG3060 Uncharacterized conser 99.4 2E-10 4.4E-15 107.1 21.8 175 135-360 63-237 (289)
66 PRK15363 pathogenicity island 99.4 1.5E-11 3.2E-16 108.4 13.6 112 199-350 27-139 (157)
67 TIGR03302 OM_YfiO outer membra 99.4 4.6E-11 1E-15 114.8 18.2 150 153-348 28-200 (235)
68 PF06552 TOM20_plant: Plant sp 99.3 2.3E-11 5.1E-16 108.4 14.0 119 138-260 5-123 (186)
69 PLN03088 SGT1, suppressor of 99.3 2.6E-11 5.7E-16 123.8 16.1 115 161-310 5-119 (356)
70 PRK10747 putative protoheme IX 99.3 3.2E-10 7E-15 117.8 24.2 186 111-344 129-391 (398)
71 PRK10747 putative protoheme IX 99.3 6.7E-10 1.5E-14 115.4 26.1 205 113-354 97-368 (398)
72 KOG3060 Uncharacterized conser 99.3 6E-10 1.3E-14 104.0 22.4 202 113-348 65-276 (289)
73 KOG0550 Molecular chaperone (D 99.3 2.6E-11 5.7E-16 119.7 14.0 161 132-346 177-353 (486)
74 PRK14574 hmsH outer membrane p 99.3 1.4E-10 3.1E-15 129.0 21.6 163 134-351 44-206 (822)
75 KOG0624 dsRNA-activated protei 99.3 4.5E-10 9.7E-15 108.7 21.5 182 135-360 166-387 (504)
76 KOG0548 Molecular co-chaperone 99.3 9.9E-11 2.2E-15 119.3 17.7 141 133-308 307-473 (539)
77 PLN03088 SGT1, suppressor of 99.3 5.9E-11 1.3E-15 121.2 15.6 107 134-265 12-118 (356)
78 TIGR00540 hemY_coli hemY prote 99.3 7.3E-10 1.6E-14 115.6 23.9 198 112-343 130-399 (409)
79 cd05804 StaR_like StaR_like; a 99.3 1.3E-10 2.7E-15 118.6 17.6 161 134-345 53-217 (355)
80 KOG2002 TPR-containing nuclear 99.3 6.3E-10 1.4E-14 120.0 23.0 196 113-348 177-414 (1018)
81 KOG4162 Predicted calmodulin-b 99.2 4.6E-10 1E-14 118.5 19.7 165 138-349 458-789 (799)
82 CHL00033 ycf3 photosystem I as 99.2 3.5E-10 7.6E-15 103.0 15.6 130 138-295 13-154 (168)
83 PRK02603 photosystem I assembl 99.2 8.2E-10 1.8E-14 101.0 16.9 128 155-310 32-166 (172)
84 CHL00033 ycf3 photosystem I as 99.2 8.7E-10 1.9E-14 100.4 16.6 117 134-267 45-167 (168)
85 PRK11906 transcriptional regul 99.2 1.7E-09 3.7E-14 110.1 19.1 171 138-354 272-447 (458)
86 KOG2003 TPR repeat-containing 99.2 3.1E-09 6.8E-14 106.0 20.1 170 112-309 502-708 (840)
87 cd05804 StaR_like StaR_like; a 99.1 1.6E-09 3.5E-14 110.5 17.6 162 135-347 17-181 (355)
88 PRK11906 transcriptional regul 99.1 4.4E-09 9.6E-14 107.1 20.1 156 151-348 241-406 (458)
89 PRK10153 DNA-binding transcrip 99.1 2.1E-09 4.5E-14 114.4 18.3 132 137-296 355-488 (517)
90 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.7E-09 3.7E-14 91.6 14.2 107 158-299 2-114 (119)
91 KOG0550 Molecular chaperone (D 99.1 7.3E-10 1.6E-14 109.7 13.2 142 131-308 210-367 (486)
92 KOG1174 Anaphase-promoting com 99.1 5.5E-09 1.2E-13 103.4 19.0 189 131-349 239-473 (564)
93 COG4235 Cytochrome c biogenesi 99.1 2.4E-09 5.2E-14 103.2 15.7 126 138-295 136-261 (287)
94 COG2956 Predicted N-acetylgluc 99.1 6.9E-09 1.5E-13 100.0 18.5 171 111-311 80-265 (389)
95 PRK14720 transcript cleavage f 99.1 5E-09 1.1E-13 115.9 19.6 206 134-354 41-263 (906)
96 PRK14574 hmsH outer membrane p 99.1 6E-09 1.3E-13 116.2 20.5 164 112-311 46-219 (822)
97 COG4783 Putative Zn-dependent 99.1 1.9E-08 4E-13 102.2 21.9 121 155-310 303-423 (484)
98 PRK10153 DNA-binding transcrip 99.1 4.9E-09 1.1E-13 111.6 18.7 156 152-352 331-491 (517)
99 COG4783 Putative Zn-dependent 99.1 1.2E-08 2.7E-13 103.4 20.2 106 137-267 307-424 (484)
100 cd00189 TPR Tetratricopeptide 99.1 2.4E-09 5.1E-14 84.9 12.2 99 160-293 2-100 (100)
101 PRK02603 photosystem I assembl 99.1 6E-09 1.3E-13 95.3 16.1 116 134-266 45-166 (172)
102 PF13414 TPR_11: TPR repeat; P 99.1 7.4E-10 1.6E-14 85.0 8.3 68 156-248 1-69 (69)
103 KOG1128 Uncharacterized conser 99.1 2.4E-09 5.2E-14 112.7 14.6 194 114-348 412-621 (777)
104 KOG1127 TPR repeat-containing 99.1 7.1E-09 1.5E-13 112.0 18.4 164 137-347 471-663 (1238)
105 KOG2076 RNA polymerase III tra 99.1 9.9E-09 2.1E-13 110.3 19.4 133 159-345 140-272 (895)
106 COG4235 Cytochrome c biogenesi 99.0 5.9E-09 1.3E-13 100.5 15.9 128 186-350 136-263 (287)
107 PF13414 TPR_11: TPR repeat; P 99.0 8.2E-10 1.8E-14 84.7 8.0 68 204-292 1-69 (69)
108 TIGR02795 tol_pal_ybgF tol-pal 99.0 4.9E-09 1.1E-13 88.8 13.4 109 206-354 2-116 (119)
109 KOG1156 N-terminal acetyltrans 99.0 1.2E-08 2.5E-13 106.3 18.4 151 121-311 9-159 (700)
110 PRK14720 transcript cleavage f 99.0 4E-09 8.6E-14 116.7 15.4 130 151-310 24-164 (906)
111 KOG4162 Predicted calmodulin-b 99.0 1.3E-08 2.8E-13 107.9 17.4 130 134-296 660-789 (799)
112 COG2956 Predicted N-acetylgluc 99.0 1.7E-08 3.7E-13 97.3 16.5 165 136-348 47-248 (389)
113 KOG0543 FKBP-type peptidyl-pro 99.0 1.2E-08 2.6E-13 101.7 16.0 117 159-310 209-340 (397)
114 cd00189 TPR Tetratricopeptide 99.0 9.4E-09 2E-13 81.4 12.5 99 208-346 2-100 (100)
115 KOG0495 HAT repeat protein [RN 99.0 6.8E-08 1.5E-12 100.6 21.0 186 113-352 631-855 (913)
116 KOG1128 Uncharacterized conser 99.0 8.1E-09 1.7E-13 108.8 14.5 165 132-348 406-587 (777)
117 KOG1156 N-terminal acetyltrans 99.0 4.2E-08 9E-13 102.2 19.4 188 134-356 51-261 (700)
118 KOG1127 TPR repeat-containing 98.9 2E-08 4.2E-13 108.7 16.2 197 113-348 381-630 (1238)
119 PF09976 TPR_21: Tetratricopep 98.9 5.5E-08 1.2E-12 86.3 16.3 134 114-288 6-145 (145)
120 PF14938 SNAP: Soluble NSF att 98.9 1.7E-08 3.6E-13 100.0 13.3 181 114-348 29-230 (282)
121 KOG0543 FKBP-type peptidyl-pro 98.9 3.7E-08 8E-13 98.2 14.8 127 131-291 215-356 (397)
122 KOG1130 Predicted G-alpha GTPa 98.9 3.2E-08 6.9E-13 98.0 13.3 208 103-343 58-344 (639)
123 PRK10866 outer membrane biogen 98.9 5.1E-07 1.1E-11 87.2 21.6 158 135-310 43-227 (243)
124 PF13432 TPR_16: Tetratricopep 98.8 1.1E-08 2.4E-13 77.4 7.7 65 210-295 1-65 (65)
125 PF12895 Apc3: Anaphase-promot 98.8 1E-08 2.2E-13 82.0 7.2 80 137-235 2-83 (84)
126 KOG4648 Uncharacterized conser 98.8 8.4E-09 1.8E-13 99.9 7.3 104 131-259 104-207 (536)
127 PF12569 NARP1: NMDA receptor- 98.8 9.1E-07 2E-11 93.9 23.2 71 252-351 195-265 (517)
128 PF13432 TPR_16: Tetratricopep 98.8 1.6E-08 3.5E-13 76.5 7.4 65 162-251 1-65 (65)
129 PF13525 YfiO: Outer membrane 98.8 4.6E-07 1E-11 85.2 17.4 163 134-310 15-193 (203)
130 KOG0495 HAT repeat protein [RN 98.8 1.6E-06 3.5E-11 90.6 22.3 165 137-348 563-753 (913)
131 PRK10803 tol-pal system protei 98.7 3.3E-07 7.2E-12 89.3 16.3 106 157-297 141-253 (263)
132 KOG1130 Predicted G-alpha GTPa 98.7 1.8E-08 3.9E-13 99.7 6.9 164 115-310 50-250 (639)
133 PF12895 Apc3: Anaphase-promot 98.7 2.7E-08 6E-13 79.5 6.8 80 186-287 3-84 (84)
134 PRK15331 chaperone protein Sic 98.7 1.9E-07 4.2E-12 82.8 12.0 112 149-296 28-139 (165)
135 PRK10803 tol-pal system protei 98.7 6E-07 1.3E-11 87.5 15.8 113 205-357 141-260 (263)
136 PRK15331 chaperone protein Sic 98.7 2.8E-07 6.2E-12 81.8 12.2 107 201-348 32-138 (165)
137 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1.2E-07 2.6E-12 96.7 10.2 69 153-239 70-141 (453)
138 KOG4648 Uncharacterized conser 98.6 9.7E-08 2.1E-12 92.7 9.0 109 161-304 100-208 (536)
139 KOG4234 TPR repeat-containing 98.6 5.1E-07 1.1E-11 81.7 12.4 109 159-302 96-209 (271)
140 KOG4340 Uncharacterized conser 98.6 1.4E-06 2.9E-11 83.5 15.6 148 135-310 21-193 (459)
141 PF12688 TPR_5: Tetratrico pep 98.6 7.5E-07 1.6E-11 76.0 12.7 97 158-289 1-103 (120)
142 PLN03081 pentatricopeptide (PP 98.6 9.3E-07 2E-11 98.7 17.2 62 112-173 271-340 (697)
143 PF13525 YfiO: Outer membrane 98.6 5.1E-06 1.1E-10 78.1 19.4 158 157-358 4-185 (203)
144 PF09976 TPR_21: Tetratricopep 98.6 2.3E-06 5.1E-11 75.8 16.1 113 188-341 27-145 (145)
145 PF13424 TPR_12: Tetratricopep 98.6 4.3E-08 9.3E-13 77.0 4.3 75 203-291 2-76 (78)
146 PF04733 Coatomer_E: Coatomer 98.6 4.7E-07 1E-11 89.7 12.5 160 134-349 112-271 (290)
147 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 4.4E-07 9.6E-12 92.6 11.8 69 201-290 70-141 (453)
148 PF12688 TPR_5: Tetratrico pep 98.6 2.4E-06 5.1E-11 72.9 14.3 108 207-356 2-115 (120)
149 PLN03218 maturation of RBCL 1; 98.6 1.8E-05 3.8E-10 91.2 25.7 169 112-310 519-734 (1060)
150 PF14559 TPR_19: Tetratricopep 98.6 2.6E-07 5.6E-12 70.4 7.3 66 135-214 2-67 (68)
151 PRK10866 outer membrane biogen 98.6 1E-05 2.3E-10 78.1 20.2 173 156-358 30-219 (243)
152 PF13424 TPR_12: Tetratricopep 98.5 1.3E-07 2.7E-12 74.3 5.3 70 155-242 2-78 (78)
153 KOG4234 TPR repeat-containing 98.5 1.2E-06 2.7E-11 79.3 11.7 102 132-258 103-209 (271)
154 COG3071 HemY Uncharacterized e 98.5 3E-05 6.5E-10 77.3 22.4 187 111-341 129-388 (400)
155 KOG4555 TPR repeat-containing 98.5 5E-06 1.1E-10 70.4 14.2 110 134-261 53-171 (175)
156 PLN03218 maturation of RBCL 1; 98.5 3.3E-05 7.2E-10 89.0 25.7 142 133-310 481-629 (1060)
157 COG4785 NlpI Lipoprotein NlpI, 98.5 8.2E-06 1.8E-10 75.0 16.4 105 117-251 63-167 (297)
158 KOG2376 Signal recognition par 98.5 9.2E-06 2E-10 84.3 18.7 153 112-295 58-258 (652)
159 COG0457 NrfG FOG: TPR repeat [ 98.5 2.3E-05 5E-10 71.6 19.7 159 134-346 105-268 (291)
160 COG0457 NrfG FOG: TPR repeat [ 98.5 2.5E-05 5.4E-10 71.4 19.8 159 134-346 69-234 (291)
161 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 5.3E-06 1.1E-10 85.1 16.1 117 136-290 181-297 (395)
162 PF13371 TPR_9: Tetratricopept 98.4 1.2E-06 2.5E-11 67.7 8.5 71 164-259 1-71 (73)
163 PF13371 TPR_9: Tetratricopept 98.4 1.2E-06 2.7E-11 67.6 8.4 69 213-302 2-70 (73)
164 PF14559 TPR_19: Tetratricopep 98.4 8.9E-07 1.9E-11 67.4 7.4 64 186-260 5-68 (68)
165 PF12569 NARP1: NMDA receptor- 98.4 4.1E-05 8.9E-10 81.5 22.3 180 113-313 17-280 (517)
166 KOG4555 TPR repeat-containing 98.4 1.4E-05 3E-10 67.7 14.4 102 161-297 46-151 (175)
167 COG3071 HemY Uncharacterized e 98.4 0.00015 3.3E-09 72.4 23.7 208 112-356 96-370 (400)
168 KOG3785 Uncharacterized conser 98.4 1.1E-05 2.3E-10 79.1 15.0 160 114-308 36-232 (557)
169 PF14938 SNAP: Soluble NSF att 98.4 9.1E-07 2E-11 87.6 7.8 160 135-346 85-269 (282)
170 PLN03081 pentatricopeptide (PP 98.4 2.1E-05 4.5E-10 87.9 19.5 150 132-310 267-441 (697)
171 PLN03077 Protein ECB2; Provisi 98.3 3.9E-05 8.4E-10 87.8 21.0 147 133-310 533-706 (857)
172 COG4785 NlpI Lipoprotein NlpI, 98.3 2E-06 4.4E-11 78.9 7.8 103 158-295 65-167 (297)
173 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.1E-05 4.5E-10 80.8 15.9 99 188-310 185-283 (395)
174 PF04733 Coatomer_E: Coatomer 98.3 5E-06 1.1E-10 82.4 10.3 152 113-297 115-272 (290)
175 KOG2376 Signal recognition par 98.3 8.3E-05 1.8E-09 77.4 19.2 185 113-348 25-258 (652)
176 KOG4642 Chaperone-dependent E3 98.2 3.5E-06 7.6E-11 78.4 8.0 91 134-242 20-110 (284)
177 COG4105 ComL DNA uptake lipopr 98.2 0.00019 4.1E-09 68.2 19.7 162 117-310 32-219 (254)
178 PRK04841 transcriptional regul 98.2 7.1E-05 1.5E-09 86.1 20.0 163 134-343 462-641 (903)
179 COG1729 Uncharacterized protei 98.2 2.8E-05 6.1E-10 74.5 13.5 105 160-299 143-253 (262)
180 PLN03077 Protein ECB2; Provisi 98.2 0.00015 3.3E-09 83.0 22.1 175 113-310 336-569 (857)
181 KOG4642 Chaperone-dependent E3 98.2 4.1E-06 8.8E-11 78.0 7.3 83 187-290 25-107 (284)
182 PRK04841 transcriptional regul 98.2 0.0001 2.2E-09 84.9 20.3 189 113-348 504-765 (903)
183 COG1729 Uncharacterized protei 98.2 3.6E-05 7.7E-10 73.8 13.5 106 121-256 143-254 (262)
184 PF13512 TPR_18: Tetratricopep 98.1 7.5E-05 1.6E-09 65.1 13.8 116 157-297 9-135 (142)
185 PF13512 TPR_18: Tetratricopep 98.1 5.2E-05 1.1E-09 66.0 12.6 101 135-253 21-135 (142)
186 COG4700 Uncharacterized protei 98.1 0.00045 9.7E-09 62.4 18.7 131 143-310 75-208 (251)
187 COG4700 Uncharacterized protei 98.1 0.00014 3E-09 65.6 14.7 109 133-267 98-209 (251)
188 PF04184 ST7: ST7 protein; In 98.1 7.9E-05 1.7E-09 76.6 14.7 192 116-355 168-387 (539)
189 KOG2796 Uncharacterized conser 98.1 0.00053 1.1E-08 65.1 18.7 164 141-360 166-332 (366)
190 KOG0545 Aryl-hydrocarbon recep 98.0 0.00015 3.2E-09 68.0 13.0 120 206-358 178-309 (329)
191 PF13428 TPR_14: Tetratricopep 98.0 1.4E-05 3E-10 55.4 4.8 44 251-304 1-44 (44)
192 PF13428 TPR_14: Tetratricopep 98.0 1.6E-05 3.5E-10 55.0 5.2 43 158-214 1-43 (44)
193 KOG2796 Uncharacterized conser 98.0 0.00025 5.5E-09 67.1 14.4 138 133-305 186-333 (366)
194 KOG0376 Serine-threonine phosp 98.0 1E-05 2.2E-10 82.6 5.5 107 134-265 14-120 (476)
195 PF13431 TPR_17: Tetratricopep 98.0 7E-06 1.5E-10 53.5 2.9 29 239-267 1-29 (34)
196 cd01238 PH_Tec Tec pleckstrin 97.9 9E-06 2E-10 68.0 4.0 84 383-480 18-106 (106)
197 KOG0376 Serine-threonine phosp 97.9 2E-05 4.4E-10 80.5 7.0 106 186-312 18-123 (476)
198 PF13431 TPR_17: Tetratricopep 97.9 1.2E-05 2.6E-10 52.3 3.2 34 146-193 1-34 (34)
199 KOG3785 Uncharacterized conser 97.9 0.0004 8.6E-09 68.4 14.5 59 274-351 164-222 (557)
200 KOG3081 Vesicle coat complex C 97.8 0.0021 4.5E-08 61.3 16.9 141 133-311 117-257 (299)
201 KOG1308 Hsp70-interacting prot 97.7 0.00014 3.1E-09 71.3 9.2 89 135-248 125-213 (377)
202 KOG1586 Protein required for f 97.7 0.0037 7.9E-08 58.5 17.9 184 113-348 27-229 (288)
203 PF04184 ST7: ST7 protein; In 97.7 0.0014 2.9E-08 67.7 16.5 110 188-313 184-313 (539)
204 KOG0545 Aryl-hydrocarbon recep 97.7 0.00029 6.3E-09 66.1 10.6 106 158-298 178-301 (329)
205 KOG4340 Uncharacterized conser 97.7 0.0013 2.9E-08 63.4 15.3 125 131-290 51-207 (459)
206 PF00515 TPR_1: Tetratricopept 97.7 6.6E-05 1.4E-09 48.6 4.1 34 251-294 1-34 (34)
207 PF00515 TPR_1: Tetratricopept 97.7 8.2E-05 1.8E-09 48.2 4.4 34 158-205 1-34 (34)
208 cd01244 PH_RasGAP_CG9209 RAS_G 97.7 4.2E-05 9E-10 62.8 3.5 79 384-479 19-97 (98)
209 PF12968 DUF3856: Domain of Un 97.6 0.0022 4.8E-08 53.5 13.4 91 186-290 23-129 (144)
210 cd01236 PH_outspread Outspread 97.6 6.7E-05 1.5E-09 62.2 4.4 96 368-478 2-101 (104)
211 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0014 3.1E-08 64.1 14.0 84 134-235 91-178 (390)
212 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.3E-09 46.7 5.1 34 158-205 1-34 (34)
213 KOG2471 TPR repeat-containing 97.6 0.00063 1.4E-08 69.5 11.4 193 136-356 218-460 (696)
214 PF07719 TPR_2: Tetratricopept 97.6 0.00015 3.3E-09 46.7 4.7 34 251-294 1-34 (34)
215 KOG0551 Hsp90 co-chaperone CNS 97.5 0.0006 1.3E-08 66.7 10.0 101 158-293 81-185 (390)
216 PF13281 DUF4071: Domain of un 97.5 0.015 3.2E-07 59.2 20.1 188 134-360 151-354 (374)
217 KOG0530 Protein farnesyltransf 97.5 0.0057 1.2E-07 58.2 15.8 186 112-351 38-224 (318)
218 KOG1915 Cell cycle control pro 97.5 0.027 5.8E-07 57.9 21.5 225 136-389 85-364 (677)
219 KOG1941 Acetylcholine receptor 97.5 0.0037 8E-08 62.0 14.9 149 134-311 93-262 (518)
220 COG4105 ComL DNA uptake lipopr 97.5 0.016 3.5E-07 55.3 18.9 156 157-358 33-211 (254)
221 KOG3081 Vesicle coat complex C 97.5 0.0078 1.7E-07 57.5 16.2 133 112-267 120-257 (299)
222 PF03704 BTAD: Bacterial trans 97.4 0.004 8.7E-08 54.9 13.2 75 158-250 62-136 (146)
223 COG0790 FOG: TPR repeat, SEL1 97.4 0.019 4.1E-07 56.9 19.5 180 137-348 90-271 (292)
224 KOG1915 Cell cycle control pro 97.3 0.011 2.4E-07 60.5 16.7 162 136-352 378-545 (677)
225 KOG1070 rRNA processing protei 97.3 0.015 3.3E-07 66.4 18.7 121 135-290 1541-1663(1710)
226 KOG2053 Mitochondrial inherita 97.3 0.0095 2.1E-07 65.3 16.4 103 186-310 23-125 (932)
227 PF05843 Suf: Suppressor of fo 97.3 0.0061 1.3E-07 60.3 13.9 128 137-298 14-144 (280)
228 PF05843 Suf: Suppressor of fo 97.2 0.0083 1.8E-07 59.3 14.8 137 160-350 3-143 (280)
229 KOG1941 Acetylcholine receptor 97.2 0.012 2.6E-07 58.4 14.3 144 132-310 51-221 (518)
230 KOG2053 Mitochondrial inherita 97.1 0.015 3.3E-07 63.7 16.1 106 136-267 21-126 (932)
231 KOG3617 WD40 and TPR repeat-co 97.1 0.014 2.9E-07 63.5 15.3 104 158-289 858-995 (1416)
232 PF02259 FAT: FAT domain; Int 97.1 0.031 6.6E-07 56.7 17.8 170 154-346 142-341 (352)
233 KOG2610 Uncharacterized conser 97.1 0.012 2.7E-07 57.8 13.7 142 134-310 113-262 (491)
234 KOG1070 rRNA processing protei 97.1 0.047 1E-06 62.6 19.6 157 141-348 1441-1598(1710)
235 COG3118 Thioredoxin domain-con 97.0 0.011 2.4E-07 57.4 12.8 121 133-293 143-268 (304)
236 KOG1585 Protein required for f 97.0 0.055 1.2E-06 51.2 16.9 143 114-289 25-178 (308)
237 PF04781 DUF627: Protein of un 97.0 0.012 2.7E-07 48.8 11.4 103 164-290 2-107 (111)
238 PF03704 BTAD: Bacterial trans 97.0 0.016 3.5E-07 51.0 13.1 82 188-290 22-125 (146)
239 KOG2047 mRNA splicing factor [ 97.0 0.04 8.6E-07 58.6 17.2 140 134-301 397-553 (835)
240 PF13181 TPR_8: Tetratricopept 97.0 0.0014 2.9E-08 42.2 4.2 33 252-294 2-34 (34)
241 KOG3617 WD40 and TPR repeat-co 96.9 0.024 5.2E-07 61.6 15.3 103 207-343 859-996 (1416)
242 KOG3824 Huntingtin interacting 96.9 0.0029 6.2E-08 61.4 7.4 82 115-215 112-193 (472)
243 PF13181 TPR_8: Tetratricopept 96.9 0.0018 3.9E-08 41.6 4.3 34 158-205 1-34 (34)
244 KOG1308 Hsp70-interacting prot 96.9 0.00045 9.7E-09 67.9 1.6 85 188-293 130-214 (377)
245 PF13281 DUF4071: Domain of un 96.8 0.055 1.2E-06 55.1 15.9 140 137-296 195-340 (374)
246 KOG2047 mRNA splicing factor [ 96.8 0.091 2E-06 56.0 17.7 176 137-347 360-583 (835)
247 cd01264 PH_melted Melted pleck 96.8 0.0014 3E-08 54.0 3.6 83 383-480 16-100 (101)
248 cd01235 PH_SETbf Set binding f 96.8 0.0016 3.4E-08 53.6 4.1 82 383-480 12-100 (101)
249 PF09986 DUF2225: Uncharacteri 96.7 0.024 5.1E-07 53.6 12.3 103 187-303 92-208 (214)
250 PF10300 DUF3808: Protein of u 96.7 0.027 6E-07 59.8 14.1 125 137-289 246-375 (468)
251 cd01257 PH_IRS Insulin recepto 96.7 0.0018 3.9E-08 53.5 3.9 88 384-478 12-99 (101)
252 cd01266 PH_Gab Gab (Grb2-assoc 96.7 0.002 4.3E-08 54.0 4.2 82 383-480 16-107 (108)
253 KOG1550 Extracellular protein 96.6 0.14 2.9E-06 55.8 18.7 163 116-308 228-409 (552)
254 cd01233 Unc104 Unc-104 pleckst 96.6 0.0016 3.4E-08 53.8 2.8 93 367-481 4-98 (100)
255 PF08424 NRDE-2: NRDE-2, neces 96.6 0.39 8.5E-06 48.4 20.7 160 145-344 6-184 (321)
256 KOG1586 Protein required for f 96.6 0.2 4.4E-06 47.2 16.7 150 137-348 27-188 (288)
257 PF02259 FAT: FAT domain; Int 96.5 0.09 1.9E-06 53.2 16.0 143 134-294 156-342 (352)
258 COG0790 FOG: TPR repeat, SEL1 96.4 0.48 1E-05 46.8 20.2 177 135-353 52-230 (292)
259 KOG1550 Extracellular protein 96.4 0.091 2E-06 57.1 16.0 164 139-345 227-395 (552)
260 KOG0529 Protein geranylgeranyl 96.4 0.46 9.9E-06 48.4 19.5 184 141-348 46-229 (421)
261 PF10300 DUF3808: Protein of u 96.4 0.18 3.8E-06 53.7 17.7 152 137-310 201-355 (468)
262 KOG2471 TPR repeat-containing 96.4 0.017 3.6E-07 59.5 9.3 125 188-351 222-372 (696)
263 COG3898 Uncharacterized membra 96.4 1.1 2.3E-05 45.5 21.5 92 188-293 170-295 (531)
264 cd01251 PH_centaurin_alpha Cen 96.4 0.0042 9.1E-08 51.5 4.1 82 384-481 14-100 (103)
265 COG2976 Uncharacterized protei 96.3 0.2 4.3E-06 46.0 14.8 116 142-294 70-192 (207)
266 KOG4507 Uncharacterized conser 96.3 0.012 2.6E-07 61.7 7.8 100 187-307 622-722 (886)
267 PRK10941 hypothetical protein; 96.3 0.026 5.6E-07 55.2 9.5 75 123-211 180-254 (269)
268 PF13176 TPR_7: Tetratricopept 96.2 0.0079 1.7E-07 39.4 4.0 29 253-291 1-29 (36)
269 KOG2610 Uncharacterized conser 96.2 0.07 1.5E-06 52.7 12.1 116 161-311 106-225 (491)
270 COG3914 Spy Predicted O-linked 96.2 0.081 1.7E-06 55.9 13.0 136 141-304 48-185 (620)
271 KOG1310 WD40 repeat protein [G 96.2 0.017 3.8E-07 59.9 8.0 90 188-295 390-479 (758)
272 PF13176 TPR_7: Tetratricopept 96.1 0.01 2.2E-07 38.9 4.1 29 160-202 1-29 (36)
273 cd01260 PH_CNK Connector enhan 96.1 0.0044 9.6E-08 50.6 2.9 78 383-479 17-95 (96)
274 PF04781 DUF627: Protein of un 96.1 0.064 1.4E-06 44.6 9.5 100 133-246 5-107 (111)
275 PF13174 TPR_6: Tetratricopept 96.1 0.013 2.9E-07 37.0 4.5 33 159-205 1-33 (33)
276 cd01245 PH_RasGAP_CG5898 RAS G 96.0 0.0088 1.9E-07 49.0 4.3 52 426-478 44-96 (98)
277 KOG4507 Uncharacterized conser 96.0 0.038 8.3E-07 58.0 9.5 102 136-262 619-721 (886)
278 PF13174 TPR_6: Tetratricopept 96.0 0.013 2.7E-07 37.1 4.0 33 252-294 1-33 (33)
279 cd01247 PH_GPBP Goodpasture an 96.0 0.0091 2E-07 48.3 4.0 77 384-479 13-90 (91)
280 cd01265 PH_PARIS-1 PARIS-1 ple 95.9 0.0089 1.9E-07 48.8 3.9 78 383-480 14-93 (95)
281 KOG1585 Protein required for f 95.9 0.33 7.2E-06 46.1 14.5 140 137-307 84-240 (308)
282 PF13374 TPR_10: Tetratricopep 95.8 0.024 5.2E-07 37.9 5.0 37 206-246 2-38 (42)
283 smart00028 TPR Tetratricopepti 95.7 0.015 3.2E-07 35.5 3.6 33 252-294 2-34 (34)
284 smart00028 TPR Tetratricopepti 95.6 0.021 4.4E-07 34.8 3.9 33 159-205 2-34 (34)
285 KOG3824 Huntingtin interacting 95.6 0.042 9.2E-07 53.5 7.4 65 223-304 129-193 (472)
286 PF04910 Tcf25: Transcriptiona 95.5 0.69 1.5E-05 47.4 16.6 162 148-348 30-227 (360)
287 COG3118 Thioredoxin domain-con 95.5 0.57 1.2E-05 45.8 14.8 112 159-310 135-251 (304)
288 KOG0985 Vesicle coat protein c 95.4 1.5 3.3E-05 49.4 19.4 57 155-234 1101-1157(1666)
289 PF14561 TPR_20: Tetratricopep 95.4 0.22 4.8E-06 40.1 10.0 66 191-267 7-74 (90)
290 COG3914 Spy Predicted O-linked 95.4 0.37 8E-06 51.1 14.0 126 189-354 48-182 (620)
291 PF14561 TPR_20: Tetratricopep 95.4 0.22 4.7E-06 40.2 9.9 70 143-230 7-78 (90)
292 cd01263 PH_anillin Anillin Ple 95.3 0.014 3.1E-07 49.7 3.0 95 368-478 4-120 (122)
293 PF08424 NRDE-2: NRDE-2, neces 95.3 0.87 1.9E-05 45.9 16.4 100 192-301 5-105 (321)
294 cd01250 PH_centaurin Centaurin 95.3 0.019 4.2E-07 46.2 3.6 81 383-479 13-93 (94)
295 PF12968 DUF3856: Domain of Un 95.3 0.55 1.2E-05 39.6 12.0 89 134-240 19-130 (144)
296 COG3898 Uncharacterized membra 95.2 4.1 8.9E-05 41.5 21.1 174 112-311 132-345 (531)
297 PF09613 HrpB1_HrpK: Bacterial 95.2 1.9 4.1E-05 38.6 16.1 83 207-310 11-93 (160)
298 PRK10941 hypothetical protein; 95.1 0.16 3.4E-06 49.7 10.1 74 207-301 182-255 (269)
299 PF14853 Fis1_TPR_C: Fis1 C-te 95.1 0.14 3E-06 36.9 7.0 45 207-262 2-46 (53)
300 PF09986 DUF2225: Uncharacteri 95.0 0.15 3.4E-06 48.1 9.4 103 223-348 90-199 (214)
301 PF00169 PH: PH domain; Inter 95.0 0.027 5.8E-07 45.6 3.8 85 382-480 13-102 (104)
302 COG2976 Uncharacterized protei 95.0 1.8 3.9E-05 39.9 15.5 97 210-348 93-193 (207)
303 KOG2396 HAT (Half-A-TPR) repea 95.0 0.23 4.9E-06 51.7 10.9 92 188-300 87-179 (568)
304 KOG1310 WD40 repeat protein [G 94.9 0.16 3.5E-06 52.9 9.5 79 137-230 387-465 (758)
305 PRK13184 pknD serine/threonine 94.8 0.62 1.3E-05 53.2 14.9 113 182-309 485-600 (932)
306 KOG2396 HAT (Half-A-TPR) repea 94.8 0.35 7.6E-06 50.3 11.6 89 143-256 90-179 (568)
307 cd01246 PH_oxysterol_bp Oxyste 94.6 0.032 7E-07 44.5 3.1 77 384-479 13-90 (91)
308 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.17 3.6E-06 36.4 6.2 43 252-304 2-44 (53)
309 PF04910 Tcf25: Transcriptiona 94.4 1.5 3.2E-05 44.9 15.6 87 199-299 33-142 (360)
310 PF13374 TPR_10: Tetratricopep 94.3 0.08 1.7E-06 35.2 4.2 31 251-291 2-32 (42)
311 PF07079 DUF1347: Protein of u 94.1 8.4 0.00018 40.0 20.9 135 188-361 396-543 (549)
312 KOG0530 Protein farnesyltransf 94.0 2.1 4.7E-05 41.2 14.3 120 188-346 59-179 (318)
313 PF08631 SPO22: Meiosis protei 94.0 3.5 7.5E-05 40.6 16.8 124 135-290 4-150 (278)
314 COG4976 Predicted methyltransf 93.8 0.095 2E-06 49.2 4.8 58 135-206 6-63 (287)
315 KOG0529 Protein geranylgeranyl 93.8 0.75 1.6E-05 46.9 11.5 146 136-300 87-234 (421)
316 COG4976 Predicted methyltransf 93.7 0.097 2.1E-06 49.1 4.7 54 187-251 10-63 (287)
317 PF09613 HrpB1_HrpK: Bacterial 93.7 5 0.00011 35.9 15.3 84 159-267 11-94 (160)
318 KOG3364 Membrane protein invol 93.5 1.9 4.1E-05 37.3 11.7 84 250-359 31-116 (149)
319 KOG1258 mRNA processing protei 93.5 5 0.00011 42.9 17.3 165 135-353 308-480 (577)
320 COG2912 Uncharacterized conser 93.4 0.41 8.8E-06 46.4 8.6 69 131-213 188-256 (269)
321 cd01252 PH_cytohesin Cytohesin 93.4 0.085 1.9E-06 45.3 3.6 78 384-480 14-112 (125)
322 KOG3364 Membrane protein invol 93.3 2.2 4.7E-05 37.0 11.8 84 158-263 32-117 (149)
323 KOG2300 Uncharacterized conser 93.3 2.5 5.5E-05 44.0 14.4 137 134-311 333-501 (629)
324 KOG3616 Selective LIM binding 93.2 2.9 6.2E-05 45.7 15.0 75 207-285 825-919 (1636)
325 PF10373 EST1_DNA_bind: Est1 D 93.1 0.28 6.2E-06 47.9 7.3 62 236-307 1-62 (278)
326 smart00233 PH Pleckstrin homol 92.6 0.17 3.7E-06 40.1 4.2 86 382-481 14-101 (102)
327 cd02682 MIT_AAA_Arch MIT: doma 92.4 0.96 2.1E-05 35.0 7.7 50 211-264 11-60 (75)
328 KOG3807 Predicted membrane pro 92.3 11 0.00025 37.5 16.7 173 136-353 196-401 (556)
329 KOG1839 Uncharacterized protei 92.3 1.3 2.8E-05 51.3 11.8 122 142-291 956-1087(1236)
330 COG4649 Uncharacterized protei 92.1 8.5 0.00018 35.0 14.2 137 135-308 69-213 (221)
331 PF08631 SPO22: Meiosis protei 92.0 8.1 0.00018 38.0 16.1 102 187-299 8-125 (278)
332 KOG1839 Uncharacterized protei 92.0 0.69 1.5E-05 53.4 9.2 123 188-343 948-1086(1236)
333 KOG3616 Selective LIM binding 91.3 2.3 4.9E-05 46.4 11.6 159 134-310 671-897 (1636)
334 cd01241 PH_Akt Akt pleckstrin 91.3 0.22 4.9E-06 41.1 3.5 81 382-480 13-101 (102)
335 cd02683 MIT_1 MIT: domain cont 90.8 1.8 4E-05 33.7 7.9 30 223-252 19-48 (77)
336 PF15015 NYD-SP12_N: Spermatog 90.8 4.7 0.0001 41.4 12.7 83 131-231 183-283 (569)
337 cd01253 PH_beta_spectrin Beta- 90.8 0.36 7.8E-06 39.8 4.3 83 383-479 20-103 (104)
338 PRK15180 Vi polysaccharide bio 90.7 1.1 2.4E-05 46.5 8.3 127 137-298 302-428 (831)
339 COG5191 Uncharacterized conser 90.7 0.49 1.1E-05 46.4 5.5 87 146-257 95-182 (435)
340 KOG4814 Uncharacterized conser 90.6 4.5 9.8E-05 43.6 12.9 100 117-234 347-452 (872)
341 PF12862 Apc5: Anaphase-promot 90.4 0.98 2.1E-05 36.5 6.5 59 223-291 11-71 (94)
342 PF10373 EST1_DNA_bind: Est1 D 90.3 0.93 2E-05 44.2 7.5 62 143-218 1-62 (278)
343 PF10602 RPN7: 26S proteasome 90.2 3.1 6.7E-05 38.0 10.3 99 158-289 36-141 (177)
344 COG4941 Predicted RNA polymera 90.1 22 0.00048 35.7 16.7 181 136-352 208-403 (415)
345 KOG1914 mRNA cleavage and poly 90.1 29 0.00063 37.0 18.1 156 145-311 266-451 (656)
346 COG5191 Uncharacterized conser 89.8 0.53 1.1E-05 46.2 4.9 87 193-300 94-181 (435)
347 cd01254 PH_PLD Phospholipase D 89.4 0.4 8.8E-06 40.9 3.5 89 384-479 31-120 (121)
348 TIGR02561 HrpB1_HrpK type III 89.0 10 0.00022 33.5 11.8 71 223-310 23-93 (153)
349 KOG3783 Uncharacterized conser 88.9 28 0.0006 37.1 17.0 79 254-360 452-544 (546)
350 PF10516 SHNi-TPR: SHNi-TPR; 88.8 0.92 2E-05 30.1 4.1 34 207-244 2-35 (38)
351 COG2909 MalT ATP-dependent tra 88.7 32 0.00069 38.8 18.1 147 135-310 469-633 (894)
352 PF04190 DUF410: Protein of un 88.5 25 0.00055 34.2 22.0 153 113-290 3-170 (260)
353 PRK13184 pknD serine/threonine 88.4 7.6 0.00016 44.7 13.6 105 132-255 483-590 (932)
354 PF15413 PH_11: Pleckstrin hom 88.3 0.38 8.2E-06 40.5 2.6 32 447-478 79-110 (112)
355 KOG1258 mRNA processing protei 88.3 41 0.00089 36.3 18.1 162 114-310 245-415 (577)
356 KOG2300 Uncharacterized conser 88.2 6.8 0.00015 41.0 11.8 133 136-300 379-527 (629)
357 PF10516 SHNi-TPR: SHNi-TPR; 88.0 0.91 2E-05 30.1 3.7 30 159-202 2-31 (38)
358 PF07720 TPR_3: Tetratricopept 87.5 2 4.2E-05 28.2 5.0 34 158-205 1-36 (36)
359 cd00821 PH Pleckstrin homology 87.4 0.67 1.5E-05 36.1 3.5 81 384-479 14-95 (96)
360 smart00745 MIT Microtubule Int 87.2 4.8 0.0001 31.0 8.1 44 188-250 5-48 (77)
361 COG3629 DnrI DNA-binding trans 87.1 6.3 0.00014 38.7 10.6 74 157-248 152-225 (280)
362 KOG1914 mRNA cleavage and poly 87.1 28 0.00062 37.1 15.6 125 148-305 10-138 (656)
363 TIGR02561 HrpB1_HrpK type III 87.1 7.6 0.00016 34.3 9.9 69 188-267 26-94 (153)
364 cd02678 MIT_VPS4 MIT: domain c 87.1 4.8 0.0001 31.0 8.0 44 188-250 3-46 (75)
365 COG2912 Uncharacterized conser 86.5 5.1 0.00011 39.0 9.3 61 223-300 194-254 (269)
366 KOG4014 Uncharacterized conser 86.2 11 0.00023 34.6 10.6 153 137-310 48-214 (248)
367 KOG0546 HSP90 co-chaperone CPR 86.1 0.84 1.8E-05 45.6 3.9 116 211-360 227-355 (372)
368 PF11207 DUF2989: Protein of u 86.1 26 0.00056 32.6 13.4 51 249-310 139-193 (203)
369 KOG2041 WD40 repeat protein [G 85.8 15 0.00033 40.1 13.2 103 113-233 747-875 (1189)
370 KOG0985 Vesicle coat protein c 85.3 28 0.00062 39.9 15.2 61 249-309 1247-1327(1666)
371 PF12862 Apc5: Anaphase-promot 85.1 5.9 0.00013 31.9 8.0 51 188-242 14-73 (94)
372 KOG2422 Uncharacterized conser 85.0 32 0.00069 37.0 14.9 113 184-310 250-392 (665)
373 cd01237 Unc112 Unc-112 pleckst 84.9 1.1 2.3E-05 37.1 3.4 80 384-480 18-102 (106)
374 cd02684 MIT_2 MIT: domain cont 84.9 2.7 5.8E-05 32.6 5.5 44 188-250 3-46 (75)
375 KOG4014 Uncharacterized conser 84.9 23 0.00049 32.5 12.0 136 137-291 86-234 (248)
376 KOG3807 Predicted membrane pro 84.7 46 0.001 33.4 15.9 106 188-309 200-325 (556)
377 PF10602 RPN7: 26S proteasome 84.4 18 0.0004 32.9 11.7 64 206-290 36-102 (177)
378 KOG4814 Uncharacterized conser 84.4 10 0.00022 41.1 11.0 86 184-290 366-457 (872)
379 COG4455 ImpE Protein of avirul 84.1 9.6 0.00021 35.9 9.5 175 278-481 18-228 (273)
380 cd00900 PH-like Pleckstrin hom 84.1 0.87 1.9E-05 35.7 2.6 80 383-479 16-98 (99)
381 cd02681 MIT_calpain7_1 MIT: do 83.8 9.7 0.00021 29.6 8.1 40 189-247 4-43 (76)
382 PF07721 TPR_4: Tetratricopept 83.8 1.1 2.5E-05 26.7 2.4 25 252-286 2-26 (26)
383 PTZ00267 NIMA-related protein 83.6 1.1 2.3E-05 47.9 3.8 85 384-481 390-476 (478)
384 cd02677 MIT_SNX15 MIT: domain 83.6 11 0.00023 29.2 8.3 43 188-249 3-45 (75)
385 KOG0128 RNA-binding protein SA 83.5 61 0.0013 36.4 16.7 127 138-290 93-219 (881)
386 PF10579 Rapsyn_N: Rapsyn N-te 83.1 15 0.00033 28.7 8.8 64 119-201 6-72 (80)
387 PF10345 Cohesin_load: Cohesin 83.0 80 0.0017 34.8 20.7 126 140-297 37-177 (608)
388 COG3947 Response regulator con 82.9 8.3 0.00018 37.8 9.0 72 113-198 268-339 (361)
389 cd01239 PH_PKD Protein kinase 82.8 1.4 3.1E-05 36.8 3.3 79 384-479 14-116 (117)
390 PF07721 TPR_4: Tetratricopept 82.7 1.5 3.4E-05 26.1 2.7 24 159-196 2-25 (26)
391 PF07720 TPR_3: Tetratricopept 82.1 4 8.7E-05 26.7 4.6 33 252-294 2-36 (36)
392 COG3629 DnrI DNA-binding trans 81.9 8.5 0.00018 37.8 8.8 65 205-290 152-216 (280)
393 cd01230 PH_EFA6 EFA6 Pleckstri 81.8 2.6 5.7E-05 35.7 4.7 38 447-484 76-114 (117)
394 cd02656 MIT MIT: domain contai 81.4 4.3 9.4E-05 31.2 5.5 27 223-249 19-45 (75)
395 PF13226 DUF4034: Domain of un 81.4 25 0.00053 34.6 11.8 78 190-267 61-149 (277)
396 PF15410 PH_9: Pleckstrin homo 81.4 2.6 5.6E-05 35.8 4.6 95 382-480 22-117 (119)
397 PF04212 MIT: MIT (microtubule 80.4 16 0.00035 27.4 8.3 27 223-249 18-44 (69)
398 PF07079 DUF1347: Protein of u 79.6 86 0.0019 32.9 17.0 115 134-286 389-520 (549)
399 KOG0546 HSP90 co-chaperone CPR 79.5 2.3 5E-05 42.6 4.1 111 163-308 227-356 (372)
400 PF15015 NYD-SP12_N: Spermatog 79.0 29 0.00062 35.9 11.6 79 188-287 192-288 (569)
401 KOG0890 Protein kinase of the 78.8 61 0.0013 40.7 16.0 152 136-307 1682-1858(2382)
402 cd02679 MIT_spastin MIT: domai 78.3 5.9 0.00013 31.0 5.2 43 187-248 4-46 (79)
403 KOG2422 Uncharacterized conser 76.6 1.2E+02 0.0025 32.9 15.8 166 138-345 252-450 (665)
404 smart00299 CLH Clathrin heavy 76.5 48 0.001 28.4 12.9 36 137-172 20-55 (140)
405 smart00386 HAT HAT (Half-A-TPR 75.9 7.7 0.00017 23.5 4.6 30 138-167 1-30 (33)
406 PF11207 DUF2989: Protein of u 75.8 12 0.00026 34.9 7.4 71 141-230 123-198 (203)
407 KOG1464 COP9 signalosome, subu 74.9 88 0.0019 30.6 14.5 51 137-201 40-94 (440)
408 KOG1464 COP9 signalosome, subu 73.9 49 0.0011 32.3 11.1 59 187-249 42-104 (440)
409 cd02680 MIT_calpain7_2 MIT: do 73.9 10 0.00023 29.3 5.5 44 188-252 3-46 (75)
410 PF12739 TRAPPC-Trs85: ER-Golg 73.5 34 0.00073 35.8 11.1 117 161-305 211-351 (414)
411 COG5107 RNA14 Pre-mRNA 3'-end 73.5 81 0.0018 33.1 13.1 79 145-244 289-367 (660)
412 PF04190 DUF410: Protein of un 73.4 65 0.0014 31.3 12.4 102 136-270 2-109 (260)
413 cd01219 PH_FGD FGD (faciogenit 71.9 7.7 0.00017 31.8 4.7 52 427-481 48-99 (101)
414 KOG0890 Protein kinase of the 71.5 66 0.0014 40.4 13.8 127 155-309 1667-1803(2382)
415 cd01231 PH_Lnk LNK-family Plec 71.2 7.4 0.00016 31.7 4.2 89 380-478 15-105 (107)
416 COG3947 Response regulator con 70.7 24 0.00053 34.7 8.4 70 161-248 282-351 (361)
417 PF12753 Nro1: Nuclear pore co 69.9 16 0.00035 37.4 7.4 71 229-301 330-403 (404)
418 PF04053 Coatomer_WDAD: Coatom 69.7 99 0.0022 32.7 13.6 61 202-267 343-405 (443)
419 cd01258 PH_syntrophin Syntroph 69.5 9.5 0.00021 31.8 4.7 41 438-478 64-106 (108)
420 smart00386 HAT HAT (Half-A-TPR 69.4 11 0.00024 22.7 4.1 29 276-304 2-30 (33)
421 COG2909 MalT ATP-dependent tra 68.4 2.2E+02 0.0047 32.5 16.0 112 135-267 426-553 (894)
422 cd01259 PH_Apbb1ip Apbb1ip (Am 67.2 8.3 0.00018 32.2 3.9 85 383-480 13-107 (114)
423 PF12309 KBP_C: KIF-1 binding 66.4 1.2E+02 0.0026 31.3 13.0 147 205-361 170-360 (371)
424 KOG2059 Ras GTPase-activating 66.3 5.5 0.00012 43.4 3.3 97 368-481 568-664 (800)
425 PRK15180 Vi polysaccharide bio 66.0 46 0.00099 35.1 9.6 83 185-288 302-384 (831)
426 cd01220 PH_CDEP Chondrocyte-de 65.7 13 0.00029 30.3 4.9 53 426-481 44-97 (99)
427 KOG2581 26S proteasome regulat 64.3 1.5E+02 0.0033 30.7 12.7 126 135-295 137-281 (493)
428 KOG4279 Serine/threonine prote 63.8 52 0.0011 36.6 9.9 122 135-261 254-410 (1226)
429 COG1747 Uncharacterized N-term 63.5 2.2E+02 0.0047 30.6 15.1 189 143-353 85-298 (711)
430 KOG1538 Uncharacterized conser 63.1 39 0.00085 36.9 8.8 41 247-287 799-843 (1081)
431 COG5536 BET4 Protein prenyltra 63.0 1.2E+02 0.0025 29.9 11.2 181 141-356 49-235 (328)
432 KOG0686 COP9 signalosome, subu 62.2 66 0.0014 33.2 9.8 101 158-289 150-257 (466)
433 PF13226 DUF4034: Domain of un 62.0 1.5E+02 0.0033 29.1 12.2 73 238-310 64-148 (277)
434 KOG0276 Vesicle coat complex C 61.7 1E+02 0.0023 33.5 11.5 119 140-286 623-746 (794)
435 PF09670 Cas_Cas02710: CRISPR- 60.9 1.3E+02 0.0028 31.1 12.2 54 134-201 141-198 (379)
436 PF10255 Paf67: RNA polymerase 58.2 34 0.00073 35.5 7.3 66 160-244 124-198 (404)
437 COG5536 BET4 Protein prenyltra 57.7 67 0.0015 31.5 8.6 148 139-307 89-239 (328)
438 KOG3783 Uncharacterized conser 57.5 57 0.0012 34.8 8.8 72 208-294 451-524 (546)
439 PF10255 Paf67: RNA polymerase 56.6 16 0.00035 37.8 4.7 60 220-289 132-192 (404)
440 KOG4236 Serine/threonine prote 55.7 8.7 0.00019 40.8 2.5 53 428-481 455-523 (888)
441 PF12854 PPR_1: PPR repeat 55.0 23 0.00049 22.5 3.6 27 250-286 6-32 (34)
442 PF14863 Alkyl_sulf_dimr: Alky 54.7 51 0.0011 28.9 6.9 58 116-173 57-119 (141)
443 KOG0276 Vesicle coat complex C 54.3 79 0.0017 34.4 9.2 94 187-310 622-723 (794)
444 KOG4279 Serine/threonine prote 54.0 61 0.0013 36.1 8.5 81 184-267 255-336 (1226)
445 PHA02537 M terminase endonucle 53.7 94 0.002 29.7 9.0 99 135-250 94-211 (230)
446 KOG0686 COP9 signalosome, subu 53.1 1.4E+02 0.0029 31.1 10.3 53 207-267 151-203 (466)
447 KOG0739 AAA+-type ATPase [Post 53.0 76 0.0017 31.6 8.3 47 187-252 6-52 (439)
448 PF04053 Coatomer_WDAD: Coatom 52.9 3E+02 0.0066 29.1 14.5 45 248-310 344-388 (443)
449 TIGR03504 FimV_Cterm FimV C-te 52.4 63 0.0014 22.1 5.6 41 298-358 2-42 (44)
450 TIGR03504 FimV_Cterm FimV C-te 52.0 24 0.00052 24.2 3.5 26 254-289 2-27 (44)
451 KOG3640 Actin binding protein 51.7 20 0.00044 40.4 4.7 27 460-486 1085-1111(1116)
452 COG4941 Predicted RNA polymera 51.1 2.8E+02 0.0061 28.1 13.9 135 137-303 269-407 (415)
453 PF10345 Cohesin_load: Cohesin 51.0 2E+02 0.0044 31.6 12.6 109 208-349 303-447 (608)
454 COG3014 Uncharacterized protei 50.0 2.9E+02 0.0064 28.0 13.6 95 192-290 41-168 (449)
455 PF04212 MIT: MIT (microtubule 49.9 34 0.00075 25.6 4.5 32 117-153 3-34 (69)
456 KOG2041 WD40 repeat protein [G 49.8 1.3E+02 0.0027 33.5 9.9 23 207-233 797-819 (1189)
457 KOG1920 IkappaB kinase complex 49.7 1.8E+02 0.004 34.2 11.7 64 223-287 965-1039(1265)
458 PHA02537 M terminase endonucle 49.5 42 0.0009 32.0 5.9 99 184-294 95-211 (230)
459 PF11817 Foie-gras_1: Foie gra 49.5 1.4E+02 0.0031 28.6 9.9 75 188-267 154-234 (247)
460 cd02680 MIT_calpain7_2 MIT: do 49.5 33 0.00072 26.5 4.3 33 116-153 3-35 (75)
461 PF08626 TRAPPC9-Trs120: Trans 49.2 3.7E+02 0.008 32.4 15.0 129 158-310 242-460 (1185)
462 PF03097 BRO1: BRO1-like domai 48.9 1.6E+02 0.0034 30.2 10.7 39 158-201 107-145 (377)
463 PF12739 TRAPPC-Trs85: ER-Golg 48.5 3.4E+02 0.0074 28.3 16.0 150 134-291 218-400 (414)
464 COG4649 Uncharacterized protei 47.7 2.3E+02 0.0049 26.1 12.1 125 113-263 71-212 (221)
465 KOG0930 Guanine nucleotide exc 46.7 27 0.0006 33.8 4.1 101 367-489 262-389 (395)
466 cd01243 PH_MRCK MRCK (myotonic 46.6 19 0.00041 30.5 2.7 101 368-483 5-121 (122)
467 PF09548 Spore_III_AB: Stage I 46.4 74 0.0016 28.7 6.9 78 223-304 79-160 (170)
468 PF10579 Rapsyn_N: Rapsyn N-te 45.1 1.5E+02 0.0032 23.2 9.1 53 161-231 9-64 (80)
469 PF12309 KBP_C: KIF-1 binding 45.1 3.7E+02 0.0079 27.7 13.3 89 207-296 223-344 (371)
470 COG4455 ImpE Protein of avirul 44.9 2.9E+02 0.0062 26.4 11.5 59 134-206 11-69 (273)
471 cd09034 BRO1_Alix_like Protein 44.9 3.4E+02 0.0074 27.3 12.5 39 158-200 111-149 (345)
472 PF14863 Alkyl_sulf_dimr: Alky 44.9 73 0.0016 27.9 6.3 49 156-218 68-116 (141)
473 cd09241 BRO1_ScRim20-like Prot 44.1 2.1E+02 0.0045 29.2 10.5 39 158-201 106-144 (355)
474 PF11846 DUF3366: Domain of un 43.8 88 0.0019 28.6 7.2 47 236-293 130-176 (193)
475 PF09797 NatB_MDM20: N-acetylt 43.8 64 0.0014 33.0 6.8 89 138-244 197-286 (365)
476 PF09205 DUF1955: Domain of un 43.1 1.6E+02 0.0035 25.8 7.8 43 238-290 107-149 (161)
477 PF11846 DUF3366: Domain of un 43.1 90 0.002 28.5 7.1 52 138-204 125-176 (193)
478 KOG2581 26S proteasome regulat 42.6 4.2E+02 0.009 27.7 13.0 124 188-348 142-281 (493)
479 PF12854 PPR_1: PPR repeat 42.4 58 0.0013 20.6 4.0 26 205-234 6-31 (34)
480 PF14593 PH_3: PH domain; PDB: 42.1 51 0.0011 27.3 4.6 53 426-485 51-103 (104)
481 PRK08307 stage III sporulation 41.9 99 0.0021 28.0 7.0 78 223-304 80-161 (171)
482 cd02681 MIT_calpain7_1 MIT: do 41.4 49 0.0011 25.6 4.2 32 117-153 4-35 (76)
483 PF09670 Cas_Cas02710: CRISPR- 40.9 4.2E+02 0.0092 27.3 13.7 62 160-237 133-196 (379)
484 PF13041 PPR_2: PPR repeat fam 40.6 1.1E+02 0.0024 20.8 5.7 41 250-301 2-44 (50)
485 COG5600 Transcription-associat 40.5 2E+02 0.0044 29.4 9.3 92 184-293 142-252 (413)
486 cd02683 MIT_1 MIT: domain cont 40.4 52 0.0011 25.5 4.2 32 117-153 4-35 (77)
487 PF12753 Nro1: Nuclear pore co 40.3 51 0.0011 33.9 5.2 61 137-201 331-391 (404)
488 PF01239 PPTA: Protein prenylt 39.5 90 0.0019 19.1 4.6 28 237-264 3-30 (31)
489 PF09205 DUF1955: Domain of un 39.4 2.1E+02 0.0046 25.0 7.9 53 135-201 97-149 (161)
490 cd02682 MIT_AAA_Arch MIT: doma 39.3 1.4E+02 0.003 23.1 6.3 37 260-299 15-51 (75)
491 KOG1920 IkappaB kinase complex 39.1 7.4E+02 0.016 29.5 14.8 36 253-288 941-979 (1265)
492 PF03097 BRO1: BRO1-like domai 38.8 4.4E+02 0.0095 26.8 12.5 40 207-246 108-152 (377)
493 KOG0889 Histone acetyltransfer 38.6 1.5E+02 0.0031 39.1 9.4 91 158-266 2812-2902(3550)
494 PF08238 Sel1: Sel1 repeat; I 38.3 99 0.0021 19.5 4.9 35 251-290 1-37 (39)
495 PF12814 Mcp5_PH: Meiotic cell 38.2 59 0.0013 27.6 4.6 55 427-481 62-121 (123)
496 cd09243 BRO1_Brox_like Protein 37.7 4.6E+02 0.01 26.8 12.0 40 158-199 109-148 (353)
497 cd09240 BRO1_Alix Protein-inte 37.7 4.3E+02 0.0094 26.8 11.6 38 158-200 119-156 (346)
498 PF00244 14-3-3: 14-3-3 protei 37.5 3.7E+02 0.0081 25.6 16.6 154 160-342 3-201 (236)
499 TIGR02833 spore_III_AB stage I 37.3 1.3E+02 0.0028 27.2 6.9 77 224-304 80-160 (170)
500 KOG0889 Histone acetyltransfer 37.0 6.7E+02 0.014 33.6 14.6 137 187-347 2734-2887(3550)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.8e-25 Score=225.53 Aligned_cols=190 Identities=25% Similarity=0.282 Sum_probs=153.6
Q ss_pred hhhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC-----
Q 010864 111 QLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV----- 175 (498)
Q Consensus 111 q~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~----- 175 (498)
...|...+|...|.+++... +-.+..+|+.-.||..|++|+.++|.++++|+|||.+|.+.+.+.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHH
Confidence 34567777777777776655 333456777888888888888888888888888888887777631
Q ss_pred -------CCC--------CCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 176 -------SLD--------STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 176 -------~~~--------~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
.|. ++.+-..|+++-||..|++||++.|+..++|+|||.++.+ .|+..||+ .+|
T Consensus 275 Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd----~G~V~ea~-------~cY 343 (966)
T KOG4626|consen 275 YLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD----KGSVTEAV-------DCY 343 (966)
T ss_pred HHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh----ccchHHHH-------HHH
Confidence 111 1123344668888888888888888888888888888888 88888888 799
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchH------------------------HhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864 241 EKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------REKQTIVRTAISKFRAAIQLQFDFHR 296 (498)
Q Consensus 241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~ 296 (498)
.+||.+.|+++++++|||.+|.++|.+++| +.++|++++|+.+|++||+++|.++.
T Consensus 344 nkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 344 NKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 999999999999999999999999999887 56799999999999999999999999
Q ss_pred HHHHHHHHHHHcchh
Q 010864 297 AIYNLGTVLYGLAED 311 (498)
Q Consensus 297 a~~~Lg~~~~~~g~~ 311 (498)
++.|+|.+|..+|+.
T Consensus 424 a~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhcchHHHHhhhH
Confidence 999999999999983
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=5.8e-23 Score=208.82 Aligned_cols=195 Identities=26% Similarity=0.323 Sum_probs=152.6
Q ss_pred hhhhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCC
Q 010864 110 HQLAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (498)
Q Consensus 110 ~q~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~ 179 (498)
+...+.++.|+..|.+++... +-.|+.+|.++-||..|+++|+++|+.+++++|+|+++...|+
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~------ 335 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS------ 335 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc------
Confidence 334567777777777776655 2346677888888888888888888888888888888888888
Q ss_pred CCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------------
Q 010864 180 TSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK------------------------- 234 (498)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~------------------------- 234 (498)
..+|..+|.+||.++|+++++.+|||.+|.. +|++++|..+|.
T Consensus 336 --------V~ea~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 336 --------VTEAVDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred --------hHHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 8888888888888888888888888888888 888888874331
Q ss_pred --HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864 235 --QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (498)
Q Consensus 235 --~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~ 312 (498)
+|+.+|+.|+.++|..++++.|+|..|.++|+. ..|+.+|.+||.++|.+++++.|||.+|...|+
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v----------~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn-- 471 (966)
T KOG4626|consen 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV----------SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN-- 471 (966)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH----------HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC--
Confidence 233555555555555555555555555555555 999999999999999999999999999999999
Q ss_pred HhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 313 LRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
..+|+..|+.+++++||.+...
T Consensus 472 -----------------i~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 472 -----------------IPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred -----------------cHHHHHHHHHHHccCCCCchhh
Confidence 8999999999999999998443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=5.6e-18 Score=185.67 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=118.2
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+..+|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+++++|
T Consensus 341 ~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~--------------~~eA~~~~~~al~~~p~~~~~~~~lg 406 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD--------------PDKAEEDFDKALKLNSEDPDIYYHRA 406 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3445555666666666655555555555555555555555 55555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHH---------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 214 IAISDRAKMRGRTKEAEELWK---------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~---------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
.++.. +|++++|+..|+ +|+..|+++++.+|+++.+++++|.++..+|+
T Consensus 407 ~~~~~----~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 407 QLHFI----KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHH----cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 55555 555555554332 13367777888888888888888888888888
Q ss_pred cchHH-------------------------------hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhc
Q 010864 267 IVPAR-------------------------------EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRT 315 (498)
Q Consensus 267 ~~~a~-------------------------------~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~ 315 (498)
+++|. ...+++++|+.+|+++++++|++..++..+|.++..+|+
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~----- 557 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD----- 557 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC-----
Confidence 87660 114677778888888888888877777788888888887
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+.+|+.+|++++++.+...
T Consensus 558 --------------~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 558 --------------VDEALKLFERAAELARTEG 576 (615)
T ss_pred --------------HHHHHHHHHHHHHHhccHH
Confidence 7888888888888777544
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=5.9e-18 Score=185.49 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=134.0
Q ss_pred hhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIER---NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l 212 (498)
..+.|++|+.+|++++.. .|....+|+.+|.++..+|+ +++|+..|+++++++|++..+|+++
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~--------------~~eA~~~~~kal~l~P~~~~~~~~l 371 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK--------------HLEALADLSKSIELDPRVTQSYIKR 371 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 368899999999999987 48888999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----------------------
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA---------------------- 270 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a---------------------- 270 (498)
|.++.. +|++++|+ ..|+++++++|+++.+++++|.++..+|++++|
T Consensus 372 a~~~~~----~g~~~eA~-------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la 440 (615)
T TIGR00990 372 ASMNLE----LGDPDKAE-------EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG 440 (615)
T ss_pred HHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHH
Confidence 999999 99999999 567777777777777777788777777777332
Q ss_pred --HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 271 --REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 271 --~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+.+.|++++|+..|++++++.|+++.+++++|.++..+|+ +.+|+.+|.+++.++|++.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-------------------~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-------------------FDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-------------------HHHHHHHHHHHHhcCCccc
Confidence 1122333555555555555555555555555555555555 8999999999999998753
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.7e-18 Score=176.51 Aligned_cols=175 Identities=20% Similarity=0.214 Sum_probs=160.8
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~ 210 (498)
+.+++.+++++.||.+|++|+++||+++.+|..+|.-+..... |+.|..+|++||.++|.+..|||
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee--------------~d~a~~~fr~Al~~~~rhYnAwY 493 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE--------------FDKAMKSFRKALGVDPRHYNAWY 493 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH--------------HHhHHHHHHhhhcCCchhhHHHH
Confidence 3456778999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.||.+|.+ +++++.|+ -+|++|++++|.+......+|.++.++|+. ++|+..|++|+.+
T Consensus 494 GlG~vy~K----qek~e~Ae-------~~fqkA~~INP~nsvi~~~~g~~~~~~k~~----------d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 494 GLGTVYLK----QEKLEFAE-------FHFQKAVEINPSNSVILCHIGRIQHQLKRK----------DKALQLYEKAIHL 552 (638)
T ss_pred hhhhheec----cchhhHHH-------HHHHhhhcCCccchhHHhhhhHHHHHhhhh----------hHHHHHHHHHHhc
Confidence 99999999 99999999 799999999999999999999999999999 9999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (498)
Q Consensus 291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~ 359 (498)
+|.++-..|+.|.+++.+++ |.+|...+++..++-|++......++.+-.
T Consensus 553 d~kn~l~~~~~~~il~~~~~-------------------~~eal~~LEeLk~~vP~es~v~~llgki~k 602 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGR-------------------YVEALQELEELKELVPQESSVFALLGKIYK 602 (638)
T ss_pred CCCCchhHHHHHHHHHhhcc-------------------hHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 99999999999999999999 899999999999999999965555555443
No 6
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=5.7e-17 Score=161.50 Aligned_cols=179 Identities=18% Similarity=0.188 Sum_probs=142.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|++++|+..|+++++++|+++.+|+++|.++...|+ +++|+..|+++++++|++..+|+++|
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg 139 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGN--------------FDAAYEAFDSVLELDPTYNYAYLNRG 139 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5678999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHh---------------------
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE--------------------- 272 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~--------------------- 272 (498)
.++.. .|++++|+ ..|+++++++|+++... .+..++...+++++|..
T Consensus 140 ~~l~~----~g~~~eA~-------~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 207 (296)
T PRK11189 140 IALYY----GGRYELAQ-------DDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEF 207 (296)
T ss_pred HHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence 99999 99999999 68888888999887421 11222334455544410
Q ss_pred hhhh------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC-
Q 010864 273 KQTI------VRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP- 345 (498)
Q Consensus 273 ~~~~------~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p- 345 (498)
..|+ ++.++..+++++++.|+...+|++||.++..+|+ +.+|+.+|++|++++|
T Consensus 208 ~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~-------------------~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 208 YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD-------------------LDEAAALFKLALANNVY 268 (296)
T ss_pred HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHhCCc
Confidence 1122 2222233344446677888899999999999999 9999999999999997
Q ss_pred CHHHHHHHHHHH
Q 010864 346 SYSVYSSALRLV 357 (498)
Q Consensus 346 ~~~~~~~~l~~~ 357 (498)
++..++.++--+
T Consensus 269 ~~~e~~~~~~e~ 280 (296)
T PRK11189 269 NFVEHRYALLEL 280 (296)
T ss_pred hHHHHHHHHHHH
Confidence 555666654433
No 7
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=1.5e-16 Score=179.56 Aligned_cols=182 Identities=15% Similarity=0.067 Sum_probs=166.0
Q ss_pred hhhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~ 182 (498)
..+++++|...+.++.... +..+...|++++|+.+|+++++.+|++...+..++..+..+|+
T Consensus 521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr--------- 591 (987)
T PRK09782 521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQ--------- 591 (987)
T ss_pred HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCC---------
Confidence 4577888888888765542 2235668999999999999999999998888888877778899
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
+++|+..|+++++++|+ ..+++++|.++.+ +|++++|+ ..|+++++++|+++.+++++|.++.
T Consensus 592 -----~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~----lG~~deA~-------~~l~~AL~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 592 -----PELALNDLTRSLNIAPS-ANAYVARATIYRQ----RHNVPAAV-------SDLRAALELEPNNSNYQAALGYALW 654 (987)
T ss_pred -----HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999997 9999999999999 99999999 6999999999999999999999999
Q ss_pred HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342 (498)
Q Consensus 263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 342 (498)
..|++ ++|+..|+++++++|+++.+++++|.++..+|+ +..|..+|+++++
T Consensus 655 ~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-------------------~~eA~~~l~~Al~ 705 (987)
T PRK09782 655 DSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-------------------MAATQHYARLVID 705 (987)
T ss_pred HCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHh
Confidence 99999 999999999999999999999999999999999 8999999999999
Q ss_pred cCCCHH
Q 010864 343 LKPSYS 348 (498)
Q Consensus 343 l~p~~~ 348 (498)
++|++.
T Consensus 706 l~P~~a 711 (987)
T PRK09782 706 DIDNQA 711 (987)
T ss_pred cCCCCc
Confidence 999986
No 8
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-16 Score=159.21 Aligned_cols=156 Identities=20% Similarity=0.166 Sum_probs=148.5
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
++..++.++|+.+|++|+++||....+|..+|.-|.+++. -..|+..|++|++++|.+..+||.||
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKN--------------t~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKN--------------THAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcc--------------cHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 4556889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.+|.- ++...=|+ -+|++|+++.|++...|.-||.||.++++. ++|+.+|.+|+.....
T Consensus 406 QaYei----m~Mh~YaL-------yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~----------~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 406 QAYEI----MKMHFYAL-------YYFQKALELKPNDSRLWVALGECYEKLNRL----------EEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHH----hcchHHHH-------HHHHHHHhcCCCchHHHHHHHHHHHHhccH----------HHHHHHHHHHHhcccc
Confidence 99999 88888888 799999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 343 (498)
+..+++.||.+|.++++ +.+|+.+|.+-++.
T Consensus 465 e~~~l~~LakLye~l~d-------------------~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKD-------------------LNEAAQYYEKYVEV 495 (559)
T ss_pred chHHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHHH
Confidence 99999999999999998 89999999998873
No 9
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=2.3e-17 Score=168.31 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=155.3
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l 212 (498)
.+++.|.+.+|+-+|+.++..+|+++++|..||.+..+.++ =..||.+++++++++|++..++..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~--------------E~~ai~AL~rcl~LdP~NleaLmaL 359 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENEN--------------EQNAISALRRCLELDPTNLEALMAL 359 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccc--------------hHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35778999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHH-----------------------------------------------------------
Q 010864 213 AIAISDRAKMRGRTKEAEELW----------------------------------------------------------- 233 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~----------------------------------------------------------- 233 (498)
|+.|.. .|.-.+|.+++
T Consensus 360 AVSytN----eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~ 435 (579)
T KOG1125|consen 360 AVSYTN----EGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSG 435 (579)
T ss_pred HHHHhh----hhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhh
Confidence 999988 66666666543
Q ss_pred -----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 234 -----------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (498)
Q Consensus 234 -----------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg 302 (498)
++|+.+|+.||+.+|++...||.||-.+..-.+. .+||..|++|+++.|.+.+++||||
T Consensus 436 LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 436 LGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhh
Confidence 5588999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 303 TVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
.+|.++|. |.+|+.+|-.||.+.+.
T Consensus 506 IS~mNlG~-------------------ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 506 ISCMNLGA-------------------YKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhh-------------------HHHHHHHHHHHHHhhhc
Confidence 99999998 99999999999998776
No 10
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=2.7e-16 Score=169.86 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010864 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (498)
Q Consensus 140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~ 219 (498)
+++|+..++++++++|+++.+|..+|.++...|+ +++|+..|++|++++|+++.+|+++|.++..
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~- 384 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSE--------------YIVGSLLFKQANLLSPISADIKYYYGWNLFM- 384 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 4555555555555555555555555555555555 5555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc-CCCHHHH
Q 010864 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-FDFHRAI 298 (498)
Q Consensus 220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~-P~~~~a~ 298 (498)
.|++++|+ ..|+++++++|.++.+++.++.++...|++ ++|+..++++++.. |+++.++
T Consensus 385 ---~G~~~eAi-------~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~----------eeA~~~~~~~l~~~~p~~~~~~ 444 (553)
T PRK12370 385 ---AGQLEEAL-------QTINECLKLDPTRAAAGITKLWITYYHTGI----------DDAIRLGDELRSQHLQDNPILL 444 (553)
T ss_pred ---CCCHHHHH-------HHHHHHHhcCCCChhhHHHHHHHHHhccCH----------HHHHHHHHHHHHhccccCHHHH
Confidence 55555555 355555555555554444444444445555 66666666665553 5555556
Q ss_pred HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 299 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 299 ~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
.++|.+|..+|+ +++|...+.+.....|+...+..
T Consensus 445 ~~la~~l~~~G~-------------------~~eA~~~~~~~~~~~~~~~~~~~ 479 (553)
T PRK12370 445 SMQVMFLSLKGK-------------------HELARKLTKEISTQEITGLIAVN 479 (553)
T ss_pred HHHHHHHHhCCC-------------------HHHHHHHHHHhhhccchhHHHHH
Confidence 666666666665 66777777776666666554333
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=3.4e-16 Score=172.09 Aligned_cols=200 Identities=14% Similarity=0.060 Sum_probs=138.8
Q ss_pred hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
..++++.|...+.+++... +..+...|++++|+..|+++++++|+++.++..+|.++...|+
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~-------- 159 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK-------- 159 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------
Confidence 4677778888887777665 2345567888888888888888888888888888888888888
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH----------------------------
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW---------------------------- 233 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~---------------------------- 233 (498)
+++|+..|++++..+|++..++.+++. +.. .|++++|+..+
T Consensus 160 ------~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~----~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 160 ------ELQAISLARTQAQEVPPRGDMIATCLS-FLN----KSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH----cCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 888888888888888888777766543 555 77777776543
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch----H------------------------HhhhhhHHHHHHHHH
Q 010864 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP----A------------------------REKQTIVRTAISKFR 285 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~----a------------------------~~~~~~~~~Ai~~~~ 285 (498)
++|+..|+++++++|+++.+++++|.+|...|++++ | +...|++++|+..|+
T Consensus 229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 336677888888889999999999999999998843 1 122344455555555
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864 286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (498)
Q Consensus 286 ~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~ 349 (498)
++++++|+++.++.++|.+|..+|+ +.+|...|.+++..+|++..
T Consensus 309 ~al~l~P~~~~a~~~La~~l~~~G~-------------------~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 309 QSLATHPDLPYVRAMYARALRQVGQ-------------------YTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHHhCccchH
Confidence 5555555555555555555555554 66666666777766666653
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=4.8e-16 Score=170.92 Aligned_cols=183 Identities=11% Similarity=0.024 Sum_probs=167.4
Q ss_pred hhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDST 180 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~ 180 (498)
..+++++|+..+.+++... ...+...|++++|+..|+++++.+|+++.+++++|.+|..+|+
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~------- 261 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR------- 261 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------
Confidence 4577888888887765543 2345678999999999999999999999999999999999999
Q ss_pred CCchhhhHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864 181 SPSKDALLEE----ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (498)
Q Consensus 181 ~~~~~~~~~~----A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~ 256 (498)
+++ |+..|+++++++|++..++.++|.++.. +|++++|+ ..|+++++++|+++.++.+
T Consensus 262 -------~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~-------~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 262 -------SREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR----TGQNEKAI-------PLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred -------chhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHH
Confidence 875 8999999999999999999999999999 99999999 6899999999999999999
Q ss_pred HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHH
Q 010864 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIY 336 (498)
Q Consensus 257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~ 336 (498)
+|.+|...|++ ++|+..|+++++.+|++...+..+|.++...|+ +++|..+
T Consensus 324 La~~l~~~G~~----------~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~-------------------~deA~~~ 374 (656)
T PRK15174 324 YARALRQVGQY----------TAASDEFVQLAREKGVTSKWNRYAAAALLQAGK-------------------TSEAESV 374 (656)
T ss_pred HHHHHHHCCCH----------HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC-------------------HHHHHHH
Confidence 99999999999 999999999999999999888889999999999 8999999
Q ss_pred HHHHHhcCCCHH
Q 010864 337 IAAAHALKPSYS 348 (498)
Q Consensus 337 ~~~Al~l~p~~~ 348 (498)
|+++++.+|++.
T Consensus 375 l~~al~~~P~~~ 386 (656)
T PRK15174 375 FEHYIQARASHL 386 (656)
T ss_pred HHHHHHhChhhc
Confidence 999999999875
No 13
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.73 E-value=6.1e-16 Score=141.98 Aligned_cols=143 Identities=24% Similarity=0.324 Sum_probs=134.8
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l 212 (498)
++...|++..|..-+++||+.||++..+|..++.+|..+|. .+.|.+.|++|+.++|++.++++|.
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------------~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------------NDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------hhhHHHHHHHHHhcCCCccchhhhh
Confidence 36889999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
|..++. +|++++|. ..|++|+..- |....++-|+|.|-.+.|+. +.|..+|++++++
T Consensus 110 G~FLC~----qg~~~eA~-------q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~----------~~A~~~l~raL~~ 168 (250)
T COG3063 110 GAFLCA----QGRPEEAM-------QQFERALADPAYGEPSDTLENLGLCALKAGQF----------DQAEEYLKRALEL 168 (250)
T ss_pred hHHHHh----CCChHHHH-------HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc----------hhHHHHHHHHHHh
Confidence 999999 99999999 5777777532 44678999999999999999 9999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcch
Q 010864 291 QFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 291 ~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+|+++.....++..++..|+
T Consensus 169 dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 169 DPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CcCCChHHHHHHHHHHhccc
Confidence 99999999999999999998
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.73 E-value=8.7e-17 Score=142.77 Aligned_cols=128 Identities=15% Similarity=0.097 Sum_probs=121.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010864 144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR 223 (498)
Q Consensus 144 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~ 223 (498)
..+|+++++++|++ ++.+|.++...|+ +++|+..|++++.++|.+..+|+++|.++.. +
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~----~ 71 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGD--------------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMM----L 71 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH----H
Confidence 46899999999986 6789999999999 9999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (498)
Q Consensus 224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~ 303 (498)
|++++|+ ..|+++++++|+++.+++++|.++..+|++ ++|+..|++++++.|+++..+.++|.
T Consensus 72 g~~~~A~-------~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~----------~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 72 KEYTTAI-------NFYGHALMLDASHPEPVYQTGVCLKMMGEP----------GLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred hhHHHHH-------HHHHHHHhcCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 9999999 799999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHcc
Q 010864 304 VLYGLA 309 (498)
Q Consensus 304 ~~~~~g 309 (498)
+...+.
T Consensus 135 ~~~~l~ 140 (144)
T PRK15359 135 AQIMVD 140 (144)
T ss_pred HHHHHH
Confidence 887654
No 15
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=3.1e-16 Score=169.50 Aligned_cols=176 Identities=13% Similarity=-0.006 Sum_probs=154.5
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
.+.+++|+.+|+++++++|+++.+|..+|.+|..++... .....+.+++|+..+++|++++|+++.+|..+|.++
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g-----~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~ 348 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG-----IFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC-----CcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356789999999999999999999999999998776511 112345689999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~ 296 (498)
.. .|++++|+ ..|+++++++|+++.+++++|.++...|++ ++|+..|+++++++|+++.
T Consensus 349 ~~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~----------~eAi~~~~~Al~l~P~~~~ 407 (553)
T PRK12370 349 TI----HSEYIVGS-------LLFKQANLLSPISADIKYYYGWNLFMAGQL----------EEALQTINECLKLDPTRAA 407 (553)
T ss_pred HH----ccCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCChh
Confidence 99 99999999 799999999999999999999999999999 9999999999999999998
Q ss_pred HHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHH
Q 010864 297 AIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK-PSYSVYSSALRLV 357 (498)
Q Consensus 297 a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p~~~~~~~~l~~~ 357 (498)
+++.++.+++..|+ +++|..++++++... |+++.+...+..+
T Consensus 408 ~~~~~~~~~~~~g~-------------------~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 408 AGITKLWITYYHTG-------------------IDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred hHHHHHHHHHhccC-------------------HHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 88888888888888 899999999999875 7777554444443
No 16
>PLN02789 farnesyltranstransferase
Probab=99.72 E-value=5.6e-16 Score=154.87 Aligned_cols=191 Identities=14% Similarity=0.057 Sum_probs=165.0
Q ss_pred hhhhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHH
Q 010864 111 QLAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEE 190 (498)
Q Consensus 111 q~~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 190 (498)
...+++.+++.++..++.. .+++++|+..+.++|+++|++..+|+.+|.++..++. .+++
T Consensus 31 ~y~~~~~~a~~~~ra~l~~-------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------------~l~e 90 (320)
T PLN02789 31 AYTPEFREAMDYFRAVYAS-------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------------DLEE 90 (320)
T ss_pred eeCHHHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------------hHHH
Confidence 4568899999999988766 7889999999999999999999999999999999983 2899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (498)
Q Consensus 191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a 270 (498)
++..++++++.+|++..+|++++.++.. +|+.. +.+++.+++++++.+|+|..+|+++|.++..+|++
T Consensus 91 eL~~~~~~i~~npknyqaW~~R~~~l~~----l~~~~-----~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~--- 158 (320)
T PLN02789 91 ELDFAEDVAEDNPKNYQIWHHRRWLAEK----LGPDA-----ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW--- 158 (320)
T ss_pred HHHHHHHHHHHCCcchHHhHHHHHHHHH----cCchh-----hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH---
Confidence 9999999999999999999999999988 88631 12234799999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 350 (498)
Q Consensus 271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~ 350 (498)
++|+.++.++|+++|++..+|+++|.++..++.. . ......+..+.|+.+++.++|+|...
T Consensus 159 -------~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l--------~----~~~~~~e~el~y~~~aI~~~P~N~Sa 219 (320)
T PLN02789 159 -------EDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL--------G----GLEAMRDSELKYTIDAILANPRNESP 219 (320)
T ss_pred -------HHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc--------c----cccccHHHHHHHHHHHHHhCCCCcCH
Confidence 9999999999999999999999999999877430 0 01112467888999999999999843
Q ss_pred HH
Q 010864 351 SS 352 (498)
Q Consensus 351 ~~ 352 (498)
..
T Consensus 220 W~ 221 (320)
T PLN02789 220 WR 221 (320)
T ss_pred HH
Confidence 33
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2e-15 Score=142.46 Aligned_cols=164 Identities=21% Similarity=0.296 Sum_probs=151.2
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|++++|+..|++++..+|++..++..+|.++...|+ +++|++.|+++++++|++..+++++|
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~~ 106 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGE--------------LEKAEDSFRRALTLNPNNGDVLNNYG 106 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 6778999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
.++.. .|++++|++ .|++++.. .+.....+.++|.++...|++ ++|+..|+++++.+
T Consensus 107 ~~~~~----~g~~~~A~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 107 TFLCQ----QGKYEQAMQ-------QFEQAIEDPLYPQPARSLENAGLCALKAGDF----------DKAEKYLTRALQID 165 (234)
T ss_pred HHHHH----cccHHHHHH-------HHHHHHhccccccchHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhC
Confidence 99999 999999995 55666553 356778999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
|++..++..+|.++...|+ +.+|..++++++.+.|.+....
T Consensus 166 ~~~~~~~~~la~~~~~~~~-------------------~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQ-------------------YKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred cCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999 8999999999999988766443
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.6e-16 Score=164.54 Aligned_cols=184 Identities=18% Similarity=0.213 Sum_probs=172.6
Q ss_pred hhhcHHHHHHHHHHhhhcch----------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
..++++.|+..|.+++.++. .-+....+||.|..+|++||..+|.+..|||.+|.+|.++++
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek-------- 504 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK-------- 504 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------
Confidence 35789999999999999883 123557899999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
++.|.-.|++|+.++|.+......+|.++.. +|+.++|+ ..|++|+.+||.++-..++.|.++
T Consensus 505 ------~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL-------~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 505 ------LEFAEFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKAL-------QLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred ------hhHHHHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHH-------HHHHHHHhcCCCCchhHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 799999999999999999999999
Q ss_pred HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 341 (498)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 341 (498)
..++++ ++|+..+++.-++-|+...+++.+|.+|..+|+ ...|+..|.-|.
T Consensus 568 ~~~~~~----------~eal~~LEeLk~~vP~es~v~~llgki~k~~~~-------------------~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 568 FSLGRY----------VEALQELEELKELVPQESSVFALLGKIYKRLGN-------------------TDLALLHFSWAL 618 (638)
T ss_pred Hhhcch----------HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc-------------------chHHHHhhHHHh
Confidence 999999 999999999999999999999999999999998 788999999999
Q ss_pred hcCCCHHH
Q 010864 342 ALKPSYSV 349 (498)
Q Consensus 342 ~l~p~~~~ 349 (498)
.++|.-..
T Consensus 619 ~ldpkg~~ 626 (638)
T KOG1126|consen 619 DLDPKGAQ 626 (638)
T ss_pred cCCCccch
Confidence 99997664
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=1.3e-15 Score=171.88 Aligned_cols=182 Identities=12% Similarity=0.031 Sum_probs=167.7
Q ss_pred hhhcHHHHHHHHHHhhhcch----------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVDE----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~----------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
..++..+|..++.+++.... ......|++++|+..|+++++++|+ +.+++++|.++.++|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~-------- 624 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHN-------- 624 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCC--------
Confidence 45788889999888776641 1112349999999999999999997 9999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
+++|+..|+++++++|++..+++++|.++.. .|++++|+ ..|+++++++|+++.+++++|.++
T Consensus 625 ------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi-------~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 625 ------VPAAVSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSR-------EMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 699999999999999999999999
Q ss_pred HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 341 (498)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 341 (498)
..+|++ ++|+.+|+++++++|+++.+....|.++....+ +..+...|.++.
T Consensus 688 ~~lGd~----------~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~-------------------~~~a~~~~~r~~ 738 (987)
T PRK09782 688 QRLDDM----------AATQHYARLVIDDIDNQALITPLTPEQNQQRFN-------------------FRRLHEEVGRRW 738 (987)
T ss_pred HHCCCH----------HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH-------------------HHHHHHHHHHHh
Confidence 999999 999999999999999999999999999998887 889999999999
Q ss_pred hcCCCHH
Q 010864 342 ALKPSYS 348 (498)
Q Consensus 342 ~l~p~~~ 348 (498)
.++|+..
T Consensus 739 ~~~~~~~ 745 (987)
T PRK09782 739 TFSFDSS 745 (987)
T ss_pred hcCccch
Confidence 9999877
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.67 E-value=8.2e-15 Score=171.18 Aligned_cols=190 Identities=19% Similarity=0.133 Sum_probs=151.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc------------CCCCCC---------------------
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN------------VSLDST--------------------- 180 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~------------~~~~~~--------------------- 180 (498)
+...|++++|+..|+++++.+|+++++++.+|.+|..+|+. ..++..
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 44556666666666666666666666666666666666653 111110
Q ss_pred -CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010864 181 -SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (498)
Q Consensus 181 -~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~ 259 (498)
.....+++++|+..|+++++++|++..+++++|.++.. +|++++|+ ..|+++++++|++..++.+++.
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~-------~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAE-------RYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHH
Confidence 01134569999999999999999999999999999999 99999999 6999999999999999999999
Q ss_pred HHHHhcCcchH---------------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 260 ALQELSAIVPA---------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (498)
Q Consensus 260 ~l~~~g~~~~a---------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~ 306 (498)
+|.. +++++| +...|++++|+..|+++++++|+++.+++++|.+|.
T Consensus 428 l~~~-~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQ-QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHh-cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8753 334433 224688999999999999999999999999999999
Q ss_pred HcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
.+|+ +.+|...|+++++++|++.....++
T Consensus 507 ~~G~-------------------~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 507 QAGQ-------------------RSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HcCC-------------------HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999 8999999999999999988544433
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=3e-14 Score=134.42 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=153.4
Q ss_pred hcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864 114 EQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS 183 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~ 183 (498)
+++++|...+.+++... +..+..+|++++|+..|+++++.+|.+..+++++|.++...|+
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~---------- 114 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK---------- 114 (234)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc----------
Confidence 45555666555554433 2345678999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864 184 KDALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~--p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
+++|+..|++++... +.....++++|.++.. .|++++|. ..|+++++.+|++..++..+|.++
T Consensus 115 ----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~-------~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 115 ----YEQAMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAE-------KYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred ----HHHHHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHhCcCChHHHHHHHHHH
Confidence 999999999999864 5567889999999999 99999999 688999999999999999999999
Q ss_pred HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 341 (498)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 341 (498)
...|++ ++|+.++++++++.|+++..+..++.++...|+ ...+..+.+.+.
T Consensus 180 ~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~ 230 (234)
T TIGR02521 180 YLRGQY----------KDARAYLERYQQTYNQTAESLWLGIRIARALGD-------------------VAAAQRYGAQLQ 230 (234)
T ss_pred HHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-------------------HHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999998 677777766665
Q ss_pred hcC
Q 010864 342 ALK 344 (498)
Q Consensus 342 ~l~ 344 (498)
...
T Consensus 231 ~~~ 233 (234)
T TIGR02521 231 KLF 233 (234)
T ss_pred hhC
Confidence 543
No 22
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.2e-15 Score=149.57 Aligned_cols=189 Identities=17% Similarity=0.133 Sum_probs=145.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC-----------CCC---------CCchhhhHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL-----------DST---------SPSKDALLEEACKK 194 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~-----------~~~---------~~~~~~~~~~A~~~ 194 (498)
...|++.+|.++|.++..+||....+|...|..|...+..-+. +|+ .+....+++-|.+.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 3456677777777777777777777777777766666552100 111 11223458888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274 (498)
Q Consensus 195 ~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~ 274 (498)
|.+|+.+.|+++-.+..+|.+... .+.|.+|...|+.++...+..+.-.+.-...++|||.++.+++++
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~------- 471 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY------- 471 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-------
Confidence 888888888888888888888888 888888887666666444443333344567899999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
++||.+|+++|.+.|.++.++-.+|.+|..+|+ ++.|+++|.++|.++|++......|
T Consensus 472 ---~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn-------------------ld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 472 ---EEAIDYYQKALLLSPKDASTHASIGYIYHLLGN-------------------LDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred ---HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC-------------------hHHHHHHHHHHHhcCCccHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999999998666555
Q ss_pred HH
Q 010864 355 RL 356 (498)
Q Consensus 355 ~~ 356 (498)
..
T Consensus 530 ~~ 531 (611)
T KOG1173|consen 530 KL 531 (611)
T ss_pred HH
Confidence 43
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.65 E-value=2.3e-15 Score=133.59 Aligned_cols=125 Identities=16% Similarity=0.068 Sum_probs=116.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHH
Q 010864 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (498)
Q Consensus 192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~ 271 (498)
...|+++++++|++ ++++|.++.. .|++++|+ ..|++++.++|.+..+++++|.++..+|++
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~----~g~~~~A~-------~~~~~al~~~P~~~~a~~~lg~~~~~~g~~---- 74 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQ----EGDYSRAV-------IDFSWLVMAQPWSWRAHIALAGTWMMLKEY---- 74 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----
Confidence 56899999999986 6788999999 99999999 699999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
++|+..|+++++++|+++.+++++|.++..+|+ +.+|+.+|.+++++.|++..+.
T Consensus 75 ------~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~-------------------~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 75 ------TTAINFYGHALMLDASHPEPVYQTGVCLKMMGE-------------------PGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred ------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999999999999999 9999999999999999999877
Q ss_pred HHHHHHHc
Q 010864 352 SALRLVRS 359 (498)
Q Consensus 352 ~~l~~~~~ 359 (498)
.....+..
T Consensus 130 ~~~~~~~~ 137 (144)
T PRK15359 130 EIRQNAQI 137 (144)
T ss_pred HHHHHHHH
Confidence 77666554
No 24
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.65 E-value=4.8e-15 Score=136.15 Aligned_cols=138 Identities=24% Similarity=0.263 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al 237 (498)
..+...||.-|++.|+ +..|.+.+++||+.+|++..+|..++.+|.. .|..+.|.
T Consensus 35 a~arlqLal~YL~~gd--------------~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~----~Ge~~~A~------- 89 (250)
T COG3063 35 AKARLQLALGYLQQGD--------------YAQAKKNLEKALEHDPSYYLAHLVRAHYYQK----LGENDLAD------- 89 (250)
T ss_pred HHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChhhHH-------
Confidence 3578899999999999 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhc
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRT 315 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~~~~~~ 315 (498)
+.|++|+.++|++.+++||.|..++.+|++ ++|...|++|+.. -+.-+..+-|+|.|-.+.|+
T Consensus 90 e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq----- 154 (250)
T COG3063 90 ESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ----- 154 (250)
T ss_pred HHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-----
Confidence 699999999999999999999999999999 9999999999985 34557899999999999999
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (498)
Q Consensus 316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~ 349 (498)
...|.++|+++++++|+++.
T Consensus 155 --------------~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 155 --------------FDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred --------------chhHHHHHHHHHHhCcCCCh
Confidence 89999999999999999983
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.64 E-value=2.7e-14 Score=166.94 Aligned_cols=189 Identities=16% Similarity=0.142 Sum_probs=144.4
Q ss_pred hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc-------
Q 010864 112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN------- 174 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~------- 174 (498)
..+++++|+..+.+++... +..+..+|++++|+.+|+++++++|++..++..++.+|...+..
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3467888888888887765 33466789999999999999999999999998888877432100
Q ss_pred -CCC--------------------CCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 175 -VSL--------------------DSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 175 -~~~--------------------~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
+.. .+..+...+++++|++.|+++++++|++..+++++|.+|.. +|++++|+
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~--- 515 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQAD--- 515 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH---
Confidence 000 00011234679999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch--------------------------------------------
Q 010864 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP-------------------------------------------- 269 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~-------------------------------------------- 269 (498)
..|+++++.+|+++.+++.+|..+...+++++
T Consensus 516 ----~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 516 ----ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 56666666677766666655554443333222
Q ss_pred H--------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864 270 A--------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 270 a--------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
| +.+.|++++|+..|+++++++|+++.++++++.+|...|+.
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 1 23356679999999999999999999999999999999984
No 26
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.7e-14 Score=141.34 Aligned_cols=193 Identities=17% Similarity=0.196 Sum_probs=170.8
Q ss_pred hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
...+.++|+.+|.+++..+ +.-+..+++...|+..|++|++++|.|..+|+.||.+|..++.
T Consensus 342 lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-------- 413 (559)
T KOG1155|consen 342 LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-------- 413 (559)
T ss_pred HHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc--------
Confidence 3477899999999999888 3345678899999999999999999999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
..=|+-+|++|+++.|++...|..||.+|.+ +++.++|+ ++|.+|+...-.+..+++.||.+|
T Consensus 414 ------h~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAi-------KCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 414 ------HFYALYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAI-------KCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred ------hHHHHHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHH-------HHHHHHHhccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 799999999888999999999999
Q ss_pred HHhcCcchHHhhhhhHHHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864 262 QELSAIVPAREKQTIVRTAISKFRAAIQ-------LQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA 334 (498)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~-------l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~ 334 (498)
.++++. .+|..+|++.++ +.|+...+..-|+.-+.+.++ +++|-
T Consensus 477 e~l~d~----------~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~-------------------~~~As 527 (559)
T KOG1155|consen 477 EELKDL----------NEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD-------------------FDEAS 527 (559)
T ss_pred HHHHhH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc-------------------hHHHH
Confidence 999999 999999999998 456666777779999999998 89999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 335 IYIAAAHALKPSYSVYSSALRLVR 358 (498)
Q Consensus 335 ~~~~~Al~l~p~~~~~~~~l~~~~ 358 (498)
.|..+++..++........++-++
T Consensus 528 ~Ya~~~~~~~~e~eeak~LlReir 551 (559)
T KOG1155|consen 528 YYATLVLKGETECEEAKALLREIR 551 (559)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHH
Confidence 998888888665555544444444
No 27
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.5e-14 Score=144.86 Aligned_cols=192 Identities=18% Similarity=0.170 Sum_probs=147.0
Q ss_pred hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864 113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~ 182 (498)
.+....+...+..++..+ ...+..+.+-.+-...|.+|..+||++++.|+.+|.+++-+++
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------- 409 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------- 409 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH---------
Confidence 344445555555555554 2345667788889999999999999999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
|++|+..|+++++++|+++.+|..++.+..+ ++++.+++ +.|+.+.+.-|+.++.++..|.++.
T Consensus 410 -----~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr----~~k~~~~m-------~~Fee~kkkFP~~~Evy~~fAeiLt 473 (606)
T KOG0547|consen 410 -----YEEAIADFQKAISLDPENAYAYIQLCCALYR----QHKIAESM-------KTFEEAKKKFPNCPEVYNLFAEILT 473 (606)
T ss_pred -----HHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHHhCCCCchHHHHHHHHHh
Confidence 9999999999999999999999999999998 88888888 6777788888888888888888888
Q ss_pred HhcCcchH-------------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864 263 ELSAIVPA-------------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 263 ~~g~~~~a-------------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
.+++++.| .+..+++.+|+..+++|++++|....++..||.+...+|+
T Consensus 474 DqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~- 552 (606)
T KOG0547|consen 474 DQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK- 552 (606)
T ss_pred hHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh-
Confidence 88888544 1234566666666666666666666666666666666666
Q ss_pred HHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
..+|+++|+++..+.....
T Consensus 553 ------------------i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 553 ------------------IDEAIELFEKSAQLARTES 571 (606)
T ss_pred ------------------HHHHHHHHHHHHHHHHhHH
Confidence 6667777776666544433
No 28
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.62 E-value=9.4e-14 Score=143.48 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=101.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~ 209 (498)
...|++++|+..|++++..+|.+. ..+..+|.++...|+ +++|+..|+++++++|++..++
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~~~~ 217 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD--------------LDAARALLKKALAADPQCVRAS 217 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC--------------HHHHHHHHHHHHhHCcCCHHHH
Confidence 344555555555555555544432 133445555555555 6666666666666666665666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al 288 (498)
+.+|.++.. .|++++|+ ..|+++++.+|.+ ..+++.++.+|...|++ ++|+..+++++
T Consensus 218 ~~la~~~~~----~g~~~~A~-------~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~----------~~A~~~l~~~~ 276 (389)
T PRK11788 218 ILLGDLALA----QGDYAAAI-------EALERVEEQDPEYLSEVLPKLMECYQALGDE----------AEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHH----CCCHHHHH-------HHHHHHHHHChhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Confidence 666666655 66666655 3555555555544 34455566666666666 77777777777
Q ss_pred HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 289 ~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
+..|+.... ..++.++...|+ +.+|...++++++..|++..+...+
T Consensus 277 ~~~p~~~~~-~~la~~~~~~g~-------------------~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 277 EEYPGADLL-LALAQLLEEQEG-------------------PEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HhCCCchHH-HHHHHHHHHhCC-------------------HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 777765433 667777777776 7889999999999999887655433
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.61 E-value=1.6e-13 Score=155.18 Aligned_cols=171 Identities=20% Similarity=0.200 Sum_probs=126.5
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l 212 (498)
.+...|++++|+.+|+++++.+|++..+++++|.++...|+ +++|+..|++++..+|++..++..+
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGN--------------PDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 34566777777777777777777777777777777777777 7777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH---------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 213 AIAISDRAKMRGRTKEAEELWK---------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~---------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
+.++.. .|++++|+..++ +|+..+++++..+|.+..+|+.+|.++...|
T Consensus 540 ~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 540 AGLYLR----TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 777777 777777764432 2334555555555666666666666666666
Q ss_pred CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
++ ++|+..|+++++.+|+++.+++.+|.++...|+ +.+|..+|+++++.+|
T Consensus 616 ~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------------~~~A~~~~~~~~~~~~ 666 (899)
T TIGR02917 616 DL----------NKAVSSFKKLLALQPDSALALLLLADAYAVMKN-------------------YAKAITSLKRALELKP 666 (899)
T ss_pred CH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhcCC
Confidence 66 888888888888888888888888888888887 7888888888888888
Q ss_pred CHHHH
Q 010864 346 SYSVY 350 (498)
Q Consensus 346 ~~~~~ 350 (498)
++...
T Consensus 667 ~~~~~ 671 (899)
T TIGR02917 667 DNTEA 671 (899)
T ss_pred CCHHH
Confidence 86643
No 30
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=2.9e-14 Score=133.42 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=117.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
..++.++++..++++++.+|+++++|+.+|.+|...|+ +++|+.+|+++++++|++..++.++|.+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~--------------~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRND--------------YDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 36778999999999999999999999999999999999 9999999999999999999999999998
Q ss_pred H-HHHHHHcCC--HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864 216 I-SDRAKMRGR--TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (498)
Q Consensus 216 ~-~~~~~~~g~--~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P 292 (498)
+ .. .|+ +++|. ..++++++++|++..+++++|.++.+.|++ ++|+.+|++++++.|
T Consensus 117 L~~~----~g~~~~~~A~-------~~l~~al~~dP~~~~al~~LA~~~~~~g~~----------~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 117 LYYQ----AGQHMTPQTR-------EMIDKALALDANEVTALMLLASDAFMQADY----------AQAIELWQKVLDLNS 175 (198)
T ss_pred HHHh----cCCCCcHHHH-------HHHHHHHHhCCCChhHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCC
Confidence 5 56 777 47888 799999999999999999999999999999 999999999999987
Q ss_pred CCHH
Q 010864 293 DFHR 296 (498)
Q Consensus 293 ~~~~ 296 (498)
.+..
T Consensus 176 ~~~~ 179 (198)
T PRK10370 176 PRVN 179 (198)
T ss_pred CCcc
Confidence 6543
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.61 E-value=1.3e-13 Score=155.75 Aligned_cols=187 Identities=14% Similarity=0.034 Sum_probs=100.4
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|++++|+..+++++...|.+..+|+.+|.+|...|+ +++|+..|+++++.+|++..+++.+|
T Consensus 577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD--------------LNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 3445555555555555555555555555555555555555 55555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~---------------------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
.++.. .|++++|+..|++ |+..+++..+..|.+...+..+|.++...|+
T Consensus 643 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 643 DAYAV----MKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 55555 5555555521111 1122333333333333333334444444444
Q ss_pred cchH-----------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCC
Q 010864 267 IVPA-----------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPRE 323 (498)
Q Consensus 267 ~~~a-----------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~ 323 (498)
+++| +...|++++|+..++++++.+|++..+++++|.+|..+|+
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~------------- 785 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKD------------- 785 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC-------------
Confidence 3322 1123333666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864 324 VSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (498)
Q Consensus 324 ~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~ 357 (498)
+.+|..+|+++++..|++......+..+
T Consensus 786 ------~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 813 (899)
T TIGR02917 786 ------YDKAIKHYRTVVKKAPDNAVVLNNLAWL 813 (899)
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7888888888888888887555544443
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.60 E-value=1.4e-13 Score=142.15 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=159.6
Q ss_pred hhhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC
Q 010864 112 LAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL 177 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~ 177 (498)
..++++.|+..+..+.... +..+...|++++|+..|+++++.+|.+..++..++.++...|+
T Consensus 81 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~---- 156 (389)
T PRK11788 81 RRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKD---- 156 (389)
T ss_pred HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhch----
Confidence 4567777777776655432 2345677999999999999999999999999999999999999
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864 178 DSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (498)
Q Consensus 178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~ 252 (498)
+++|++.|+++++.+|.+. ..+.++|.++.. .|++++|+ ..|+++++.+|++..
T Consensus 157 ----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~-------~~~~~al~~~p~~~~ 215 (389)
T PRK11788 157 ----------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAAR-------ALLKKALAADPQCVR 215 (389)
T ss_pred ----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHH-------HHHHHHHhHCcCCHH
Confidence 9999999999999888753 356788888888 99999999 688888889999999
Q ss_pred HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (498)
Q Consensus 253 a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 331 (498)
+++.+|.++...|++ ++|+..|+++++.+|++ ..++..++.+|...|+ +.
T Consensus 216 ~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-------------------~~ 266 (389)
T PRK11788 216 ASILLGDLALAQGDY----------AAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-------------------EA 266 (389)
T ss_pred HHHHHHHHHHHCCCH----------HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-------------------HH
Confidence 999999999999999 99999999999998887 4678899999999998 89
Q ss_pred HHHHHHHHHHhcCCCHHHH
Q 010864 332 QSAIYIAAAHALKPSYSVY 350 (498)
Q Consensus 332 ~A~~~~~~Al~l~p~~~~~ 350 (498)
+|..++++++++.|+...+
T Consensus 267 ~A~~~l~~~~~~~p~~~~~ 285 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL 285 (389)
T ss_pred HHHHHHHHHHHhCCCchHH
Confidence 9999999999999987654
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.60 E-value=5.9e-14 Score=139.86 Aligned_cols=125 Identities=17% Similarity=0.130 Sum_probs=115.8
Q ss_pred hccHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864 137 QRILTFAAKRYANAIER---NPE-DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~---~P~-~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l 212 (498)
.+..+.++..+.++|.. +|. .+..|+++|.+|...|+ +++|+..|+++++++|+++.+|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~Al~l~P~~~~a~~~l 104 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL--------------RALARNDFSQALALRPDMADAYNYL 104 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 35667889999999964 333 47889999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P 292 (498)
|.++.. .|++++|+ ..|+++++++|++..+++++|.++...|++ ++|+..|+++++++|
T Consensus 105 g~~~~~----~g~~~~A~-------~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~----------~eA~~~~~~al~~~P 163 (296)
T PRK11189 105 GIYLTQ----AGNFDAAY-------EAFDSVLELDPTYNYAYLNRGIALYYGGRY----------ELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCC
Confidence 999999 99999999 699999999999999999999999999999 999999999999999
Q ss_pred CCHH
Q 010864 293 DFHR 296 (498)
Q Consensus 293 ~~~~ 296 (498)
+++.
T Consensus 164 ~~~~ 167 (296)
T PRK11189 164 NDPY 167 (296)
T ss_pred CCHH
Confidence 9984
No 34
>PLN02789 farnesyltranstransferase
Probab=99.59 E-value=1.3e-13 Score=137.93 Aligned_cols=194 Identities=9% Similarity=-0.001 Sum_probs=151.8
Q ss_pred cHHHHHHHHHHhhhcc----------hhhHHhhc-cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864 115 QNNAAMELINSVTGVD----------EEGRSRQR-ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS 183 (498)
Q Consensus 115 ~~~~A~~~~~~~~~~~----------~~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~ 183 (498)
..+.|+.+...++... ...+..+| .+++++..+++++..+|++..+|+.++.++..+++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~---------- 121 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGP---------- 121 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCc----------
Confidence 3445566666655544 12234456 68999999999999999999999999999998886
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~ 263 (498)
..+++++.+++++++++|++..+|+++|.++.. .|++++++ .++.++|+.||.|..+|+++|.++.+
T Consensus 122 --~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~----l~~~~eeL-------~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 122 --DAANKELEFTRKILSLDAKNYHAWSHRQWVLRT----LGGWEDEL-------EYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred --hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hhhHHHHH-------HHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 013788999999999999999999999999999 88887777 79999999999999999999999988
Q ss_pred hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (498)
Q Consensus 264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 343 (498)
+++.. .....+++++.+..++|.++|++..+|+.++.++...++.. ....++...+.+++..
T Consensus 189 ~~~l~---~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l---------------~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 189 SPLLG---GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL---------------VSDPEVSSVCLEVLSK 250 (320)
T ss_pred ccccc---cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc---------------ccchhHHHHHHHhhcc
Confidence 74320 00112357899999999999999999999999998744210 0034466667777777
Q ss_pred CCCHHH
Q 010864 344 KPSYSV 349 (498)
Q Consensus 344 ~p~~~~ 349 (498)
+|....
T Consensus 251 ~~~s~~ 256 (320)
T PLN02789 251 DSNHVF 256 (320)
T ss_pred cCCcHH
Confidence 776663
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.57 E-value=1.3e-13 Score=128.98 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcC
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL-QELSA 266 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l-~~~g~ 266 (498)
.++++..++++++.+|++..+|++||.+|.. .|++++|+ ..|+++++++|+++.++.++|.++ ...|+
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~----~g~~~~A~-------~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYLW----RNDYDNAL-------LAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999 99999999 699999999999999999999985 67777
Q ss_pred --cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864 267 --IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344 (498)
Q Consensus 267 --~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 344 (498)
+ ++|+..++++++++|++..++++||.+++.+|+ +.+|+.+|++++++.
T Consensus 124 ~~~----------~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~-------------------~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 124 HMT----------PQTREMIDKALALDANEVTALMLLASDAFMQAD-------------------YAQAIELWQKVLDLN 174 (198)
T ss_pred CCc----------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhC
Confidence 6 999999999999999999999999999999999 999999999999999
Q ss_pred CCHH
Q 010864 345 PSYS 348 (498)
Q Consensus 345 p~~~ 348 (498)
|.+.
T Consensus 175 ~~~~ 178 (198)
T PRK10370 175 SPRV 178 (198)
T ss_pred CCCc
Confidence 8877
No 36
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=2.4e-13 Score=130.65 Aligned_cols=165 Identities=21% Similarity=0.137 Sum_probs=135.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH---
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--- 207 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~--- 207 (498)
+...|++++|+..|++++..+|+++ .+++.+|.+|...|+ +++|+..|+++++.+|++..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGD--------------YAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCCchHH
Confidence 4668999999999999999999876 688999999999999 99999999999999998765
Q ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHhcCcch
Q 010864 208 AFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNWNSPQAL-----------------NNWGLALQELSAIVP 269 (498)
Q Consensus 208 a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~-----------------~~lg~~l~~~g~~~~ 269 (498)
+++.+|.++.. . +....-.+.+++|+..|++++..+|++..++ ..+|.++...|++
T Consensus 109 a~~~~g~~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~-- 182 (235)
T TIGR03302 109 AYYLRGLSNYN----QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAY-- 182 (235)
T ss_pred HHHHHHHHHHH----hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--
Confidence 79999999987 5 1111112334444489999999999986543 3566777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 270 AREKQTIVRTAISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 270 a~~~~~~~~~Ai~~~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
.+|+..|+++++..|+ .+.+++++|.++..+|+ +.+|..+++....-.|
T Consensus 183 --------~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-------------------~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 183 --------VAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-------------------KDLAQDAAAVLGANYP 234 (235)
T ss_pred --------HHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhCC
Confidence 9999999999999765 46899999999999999 8889988777655443
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=9.5e-14 Score=139.16 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=153.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
++..|++-.|...|+++|.++|.+...|..+|.+|....+ -++-...|.+|..++|+++++|+..|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~--------------~~~~~~~F~~A~~ldp~n~dvYyHRg 401 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQ--------------SEKMWKDFNKAEDLDPENPDVYYHRG 401 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhc--------------cHHHHHHHHHHHhcCCCCCchhHhHH
Confidence 5567999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.+++- ++++++|+ +.|++++.++|.++.++..++.++++++++ +++...|+.+++.-|+
T Consensus 402 Qm~fl----L~q~e~A~-------aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~----------~~~m~~Fee~kkkFP~ 460 (606)
T KOG0547|consen 402 QMRFL----LQQYEEAI-------ADFQKAISLDPENAYAYIQLCCALYRQHKI----------AESMKTFEEAKKKFPN 460 (606)
T ss_pred HHHHH----HHHHHHHH-------HHHHHHhhcChhhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhCCC
Confidence 99999 88888888 799999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
.+++++-.|.++..+++ +..|.++|.+|+.|.|.
T Consensus 461 ~~Evy~~fAeiLtDqqq-------------------Fd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQ-------------------FDKAVKQYDKAIELEPR 494 (606)
T ss_pred CchHHHHHHHHHhhHHh-------------------HHHHHHHHHHHHhhccc
Confidence 99999999999999998 99999999999999998
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1e-12 Score=129.40 Aligned_cols=178 Identities=19% Similarity=0.147 Sum_probs=165.9
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
+..+++..|+.+-+++|..+|.+..++...|.++..+++ .++|+-+|+.|..+.|...++|..|-.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------------~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------------HTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------------hHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 456889999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 215 AISDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~-----------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
+|.. .|++.||.-.- ++|-+.|++++.++|.+..+.+.++.++...|
T Consensus 377 sYLA----~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 377 SYLA----QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHh----hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 9999 99999987432 57889999999999999999999999999999
Q ss_pred CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
++ +.+|..+++++...|| ...++.||.++...+. +++|..+|.+|+.++|
T Consensus 453 ~~----------~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne-------------------~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 453 PT----------KDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNE-------------------PQKAMEYYYKALRQDP 502 (564)
T ss_pred cc----------chHHHHHHHHHhhccc-cHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHhcCc
Confidence 99 9999999999999888 6788999999999998 9999999999999999
Q ss_pred CHHHHHHHHHHHHcc
Q 010864 346 SYSVYSSALRLVRSM 360 (498)
Q Consensus 346 ~~~~~~~~l~~~~~~ 360 (498)
++.....++..+...
T Consensus 503 ~~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 503 KSKRTLRGLRLLEKS 517 (564)
T ss_pred cchHHHHHHHHHHhc
Confidence 999988888877643
No 39
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.54 E-value=8.5e-13 Score=144.12 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=138.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Q 010864 144 AKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR 223 (498)
Q Consensus 144 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~ 223 (498)
+..........|.+++++++||.+...+|+ +++|...++.++++.|++..++.+++.++.+ +
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~La~i~~~~g~--------------~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~----~ 133 (694)
T PRK15179 72 LPELLDYVRRYPHTELFQVLVARALEAAHR--------------SDEGLAVWRGIHQRFPDSSEAFILMLRGVKR----Q 133 (694)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----h
Confidence 333333445578999999999999999999 9999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (498)
Q Consensus 224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~ 303 (498)
+++++|+ ..+++++..+|+++.+++++|.++.++|++ ++|+.+|++++..+|+++.++.++|.
T Consensus 134 ~~~eeA~-------~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~----------~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 134 QGIEAGR-------AEIELYFSGGSSSAREILLEAKSWDEIGQS----------EQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred ccHHHHH-------HHHHHHhhcCCCCHHHHHHHHHHHHHhcch----------HHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999999 699999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
++...|+ .++|...|.+|++...+-.
T Consensus 197 ~l~~~G~-------------------~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 197 SLTRRGA-------------------LWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHcCC-------------------HHHHHHHHHHHHHhhCcch
Confidence 9999999 7889999999988876544
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.52 E-value=1e-13 Score=137.12 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=119.3
Q ss_pred HHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~ 211 (498)
+...++++++...++++.... +.++..|..+|.++.+.|+ .++|+.+|+++++++|++..+...
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~--------------~~~A~~~~~~al~~~P~~~~~~~~ 185 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD--------------PDKALRDYRKALELDPDDPDARNA 185 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH--------------HHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHH
Confidence 567799999999999988765 6889999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
++.++.+ .|+++++. ..+....+..|+++..+..+|.++..+|++ ++|+.+|+++++.+
T Consensus 186 l~~~li~----~~~~~~~~-------~~l~~~~~~~~~~~~~~~~la~~~~~lg~~----------~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 186 LAWLLID----MGDYDEAR-------EALKRLLKAAPDDPDLWDALAAAYLQLGRY----------EEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHCT----TCHHHHHH-------HHHHHHHHH-HTSCCHCHHHHHHHHHHT-H----------HHHHHHHHHHHHHS
T ss_pred HHHHHHH----CCChHHHH-------HHHHHHHHHCcCHHHHHHHHHHHhcccccc----------cccccccccccccc
Confidence 9999999 99999977 455555555688888999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342 (498)
Q Consensus 292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 342 (498)
|+++.++.++|.++...|+ ..+|..++.+++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~-------------------~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGR-------------------KDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------------------------
T ss_pred ccccccccccccccccccc-------------------ccccccccccccc
Confidence 9999999999999999998 6777777776654
No 41
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1e-13 Score=132.25 Aligned_cols=109 Identities=24% Similarity=0.296 Sum_probs=105.9
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
.++.++|.+|+..|.+||+++|.++..|.+++.+|.++|. |+.|++.++.||.++|++..+|..||
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~--------------~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE--------------YEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc--------------hHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5778999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
.+|.. +|++.+|+ ..|+++|+++|++...+.+|..+-.++++.
T Consensus 157 ~A~~~----~gk~~~A~-------~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 157 LAYLA----LGKYEEAI-------EAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHc----cCcHHHHH-------HHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 99999 99999999 689999999999999999999999999887
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=5.7e-13 Score=116.48 Aligned_cols=119 Identities=17% Similarity=0.158 Sum_probs=113.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010864 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (498)
Q Consensus 145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g 224 (498)
+.|++++..+|++..+.+.+|..+...|+ +++|+..|++++.++|++..+++++|.++.. +|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~----~~ 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------------YDEALKLFQLLAAYDPYNSRYWLGLAACCQM----LK 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HH
Confidence 46899999999999999999999999999 9999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010864 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (498)
Q Consensus 225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~ 298 (498)
++++|+ ..|++++..+|+++..++++|.++...|++ ++|+..|+++++++|++....
T Consensus 66 ~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 66 EYEEAI-------DAYALAAALDPDDPRPYFHAAECLLALGEP----------ESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHH-------HHHHHHHhcCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHH
Confidence 999988 689999999999999999999999999999 999999999999999987643
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.50 E-value=2.3e-12 Score=144.61 Aligned_cols=186 Identities=11% Similarity=-0.020 Sum_probs=166.2
Q ss_pred hhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCcCCC
Q 010864 113 AEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSL 177 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~~ 177 (498)
.++.++|+..|.++.... +..+..+|++++|+..|+++++.+|.+ ...+..++.++.+.|+
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~---- 325 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN---- 325 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc----
Confidence 367788888888877652 234677899999999999999998876 4678888889999999
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864 178 DSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (498)
Q Consensus 178 ~~~~~~~~~~~~~A~~~~~~Al~l~p~---------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~ 242 (498)
+++|+..+++++..+|. ...++..+|.++.. .|++++|+ +.+++
T Consensus 326 ----------~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~----~g~~~eA~-------~~l~~ 384 (765)
T PRK10049 326 ----------YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY----SNDLPQAE-------MRARE 384 (765)
T ss_pred ----------HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH----cCCHHHHH-------HHHHH
Confidence 99999999999999873 24578899999999 99999999 68999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCC
Q 010864 243 AVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPR 322 (498)
Q Consensus 243 Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~ 322 (498)
++...|++..+++++|.++...|++ ++|+..++++++++|++..+++.+|.++..+|+
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~----------~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~------------ 442 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWP----------RAAENELKKAEVLEPRNINLEVEQAWTALDLQE------------ 442 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC------------
Confidence 9999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 323 EVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 323 ~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
+.+|...+.++++..|+++....
T Consensus 443 -------~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 443 -------WRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999994443
No 44
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.50 E-value=1.7e-12 Score=125.09 Aligned_cols=180 Identities=19% Similarity=0.257 Sum_probs=152.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|++..|+..|..|++.||++..+++.+|.+|..+|+ -.-|+..+.+.|++.|+...+....|
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGk--------------sk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGK--------------SKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcC--------------CccchhhHHHHHhcCccHHHHHHHhc
Confidence 3457899999999999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH------------------------------------------HHHHHHHHHhcCCCCH
Q 010864 214 IAISDRAKMRGRTKEAEELWKQ------------------------------------------ATKNYEKAVQLNWNSP 251 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~------------------------------------------Al~~~~~Al~l~P~~~ 251 (498)
.++.+ +|++++|+..|++ ++....+.|++.|-++
T Consensus 114 ~vllK----~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 114 VVLLK----QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred hhhhh----cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence 99999 9999999976532 5566667777777777
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 331 (498)
..+...+.||...|+. ..||..++.+-++..++.+.+|.++.+++..|+ ..
T Consensus 190 ~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd-------------------~~ 240 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD-------------------AE 240 (504)
T ss_pred HHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhhh-------------------HH
Confidence 7777777777777777 999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHhcCCCHH----HHHHHHHHHHcc
Q 010864 332 QSAIYIAAAHALKPSYS----VYSSALRLVRSM 360 (498)
Q Consensus 332 ~A~~~~~~Al~l~p~~~----~~~~~l~~~~~~ 360 (498)
.++..+..+|+++|++. .|...-.+++++
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence 88889999999999987 344444444433
No 45
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.49 E-value=7.2e-13 Score=115.86 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=116.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHh
Q 010864 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPARE 272 (498)
Q Consensus 193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~ 272 (498)
+.|+++++++|++..+.+.+|.++.. .|++++|+ ..|++++..+|++..+++++|.++..+|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----- 67 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQ----QGRYDEAL-------KLFQLLAAYDPYNSRYWLGLAACCQMLKEY----- 67 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHH----cccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----
Confidence 46889999999999999999999999 99999999 688999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 273 KQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 273 ~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
++|+.+|+++++++|+++..++++|.+|...|+ +..|..+|+++++++|++..+..
T Consensus 68 -----~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 68 -----EEAIDAYALAAALDPDDPRPYFHAAECLLALGE-------------------PESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred -----HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHhccccchHHH
Confidence 999999999999999999999999999999999 99999999999999999987555
Q ss_pred HHHHH
Q 010864 353 ALRLV 357 (498)
Q Consensus 353 ~l~~~ 357 (498)
....+
T Consensus 124 ~~~~~ 128 (135)
T TIGR02552 124 LKERA 128 (135)
T ss_pred HHHHH
Confidence 44433
No 46
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=3.3e-13 Score=128.82 Aligned_cols=118 Identities=31% Similarity=0.318 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al 237 (498)
++-+.+-|.-+.+.++ |.+|+..|.+||+++|+++..|.|.+.+|.+ +|.++.|+
T Consensus 81 AE~LK~eGN~~m~~~~--------------Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~----Lg~~~~AV------- 135 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKD--------------YQEAVDKYTEAIELDPTNAVYYCNRAAAYSK----LGEYEDAV------- 135 (304)
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHH----hcchHHHH-------
Confidence 3456677888888888 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+.++.||.+||.+..+|..||.+|..+|++ ++|+..|++||+++|++...+.+|..+-.++++
T Consensus 136 kDce~Al~iDp~yskay~RLG~A~~~~gk~----------~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 136 KDCESALSIDPHYSKAYGRLGLAYLALGKY----------EEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHccCcH----------HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999999999 999999999999999999999999999888876
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.1e-12 Score=133.93 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=177.4
Q ss_pred cHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCch
Q 010864 115 QNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK 184 (498)
Q Consensus 115 ~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~ 184 (498)
++.+...+...+...+ -.++...|+..+=...-.+.+...|+.+..|+..|..|...|+
T Consensus 259 ~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k----------- 327 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK----------- 327 (611)
T ss_pred hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC-----------
Confidence 3444555555555444 1256677777777777788889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------------------HHH
Q 010864 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK---------------------------QAT 237 (498)
Q Consensus 185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~---------------------------~Al 237 (498)
+.+|..+|.|+..++|....+|..+|..+.. .|..++|+..|. .|-
T Consensus 328 ---~seARry~SKat~lD~~fgpaWl~fghsfa~----e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 328 ---YSEARRYFSKATTLDPTFGPAWLAFGHSFAG----EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred ---cHHHHHHHHHHhhcCccccHHHHHHhHHhhh----cchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999 999999998873 377
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcch
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-------FDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~-------P~~~~a~~~Lg~~~~~~g~ 310 (498)
+.|.+|+.+.|.++-.++-+|.+.+..+.| .+|+.+|+.++..- +.....+.|||.+|.++++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y----------~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEY----------PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhh----------HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 899999999999999999999999999999 99999999999532 2345679999999999999
Q ss_pred hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCchhhhhc
Q 010864 311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKAG 369 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~l~~~~~~~~ 369 (498)
+.+|+.+|++++.+.|.+..+..+++.+...+........
T Consensus 471 -------------------~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 471 -------------------YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred -------------------HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 9999999999999999999999888888777665544433
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=7.6e-13 Score=126.81 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=141.0
Q ss_pred hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~ 211 (498)
.++.++|-+.+|...++.+|+..| .++.+..|+.+|....+ ...|+..|.+.+...|.+.-....
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQ--------------P~~AL~~~~~gld~fP~~VT~l~g 295 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQ--------------PERALLVIGEGLDSFPFDVTYLLG 295 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhcc--------------HHHHHHHHhhhhhcCCchhhhhhh
Confidence 346677777777777777776654 35666777777777766 666666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864 212 WAIAISDRAKMRGRTKEAEELWKQ---------------------------ATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (498)
Q Consensus 212 lg~~~~~~~~~~g~~~eA~~~~~~---------------------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~ 264 (498)
.+.++.. ++++++|.++|+. |+.+|++.+++.-.+++.++|+|.|+..-
T Consensus 296 ~ARi~ea----m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya 371 (478)
T KOG1129|consen 296 QARIHEA----MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA 371 (478)
T ss_pred hHHHHHH----HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence 6666666 6666666666532 55899999999999999999999999999
Q ss_pred cCcchHHhhhhhHHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864 265 SAIVPAREKQTIVRTAISKFRAAIQLQ--FD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 341 (498)
Q Consensus 265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~--P~-~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 341 (498)
+++ +-++..|++|+... |+ -+++|||||.+....|+ +..|..||+.++
T Consensus 372 qQ~----------D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-------------------~nlA~rcfrlaL 422 (478)
T KOG1129|consen 372 QQI----------DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-------------------FNLAKRCFRLAL 422 (478)
T ss_pred cch----------hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-------------------hHHHHHHHHHHh
Confidence 999 99999999999874 33 36899999999999998 899999999999
Q ss_pred hcCCCHHHHHHHHHHHH
Q 010864 342 ALKPSYSVYSSALRLVR 358 (498)
Q Consensus 342 ~l~p~~~~~~~~l~~~~ 358 (498)
..++++.....+|.++.
T Consensus 423 ~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 423 TSDAQHGEALNNLAVLA 439 (478)
T ss_pred ccCcchHHHHHhHHHHH
Confidence 99999998888888765
No 49
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.46 E-value=5.2e-12 Score=118.61 Aligned_cols=166 Identities=22% Similarity=0.175 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010864 141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 220 (498)
Q Consensus 141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~ 220 (498)
..+...+-+....+|++..+ .+++..+...|+ -+.+..+..+++..+|.+...+..+|.....
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~--------------a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-- 112 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGD--------------ADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-- 112 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhccc--------------ccchHHHHhhhhccCcccHHHHHHHHHHHHH--
Confidence 34777777888889999999 999999999999 8888888888888899998888888998888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (498)
Q Consensus 221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 300 (498)
.|++.+|+ ..++++..++|++..+|+.+|.+|.+.|++ ++|...|.+++++.|+.+.+.+|
T Consensus 113 --~g~~~~A~-------~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nN 173 (257)
T COG5010 113 --NGNFGEAV-------SVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANN 173 (257)
T ss_pred --hcchHHHH-------HHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhh
Confidence 99999999 699999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 010864 301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSML 361 (498)
Q Consensus 301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~l 361 (498)
||..|+-.|+ +..|..++..+...-+.+....+++.++....
T Consensus 174 lgms~~L~gd-------------------~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 174 LGMSLLLRGD-------------------LEDAETLLLPAYLSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHHHHcCC-------------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence 9999999998 88899999999888888888888888776543
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=1.8e-12 Score=135.57 Aligned_cols=165 Identities=21% Similarity=0.237 Sum_probs=146.6
Q ss_pred hHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh---
Q 010864 133 GRSRQRILTFAAKRYANAIER--------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--- 201 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--- 201 (498)
.+..+|+|++|+..|++++++ .|.......++|.+|..+++ |.+|+..|++||.+
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k--------------~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGK--------------YDEAVNLYEEALTIREE 273 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHHHH
Confidence 467799999999999999998 67777788889999999999 99999999999998
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864 202 -----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQT 275 (498)
Q Consensus 202 -----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~ 275 (498)
+|..+.++.|||.+|.. .|++++|..+++.|+..+++.+..+ |.-+..+.+++.++..++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~-------- 341 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEY-------- 341 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcch--------
Confidence 56667899999999999 9999999999999999999965444 44567899999999999999
Q ss_pred hHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864 276 IVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344 (498)
Q Consensus 276 ~~~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 344 (498)
++|+.+|++++++ ++.-+..+.|||.+|+.+|+ |.+|.++|++|+.+.
T Consensus 342 --Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk-------------------~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 342 --EEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK-------------------YKEAEELYKKAIQIL 397 (508)
T ss_pred --hHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc-------------------hhHHHHHHHHHHHHH
Confidence 9999999999987 23447889999999999999 888888888888765
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=8.3e-13 Score=130.54 Aligned_cols=188 Identities=19% Similarity=0.189 Sum_probs=116.7
Q ss_pred hcHHHHHHHHHHhhhcchh---------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCch
Q 010864 114 EQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSK 184 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~ 184 (498)
++.+.|...+.+++..... .+...+++++|+.++.++.+.+ .++..+.....++...++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~----------- 125 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGD----------- 125 (280)
T ss_dssp -------------------------------------------------------------H-HHHTT------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccchhhHHHHHHHHHhH-----------
Confidence 4455555555555444411 1245789999999999988766 456778888888999998
Q ss_pred hhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 185 DALLEEACKKYDEATRLC--PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 185 ~~~~~~A~~~~~~Al~l~--p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
++++...++++.... +.+...|..+|.++.+ .|+.++|+ ..|+++++++|++..+++.++.++.
T Consensus 126 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~G~~~~A~-------~~~~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 126 ---YDEAEELLEKLEELPAAPDSARFWLALAEIYEQ----LGDPDKAL-------RDYRKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp ---HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH----CCHHHHHH-------HHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999988765 6788999999999999 99999999 7999999999999999999999999
Q ss_pred HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342 (498)
Q Consensus 263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 342 (498)
..|++ +++...++...+..|+++..+..+|.+|..+|+ +.+|..+|+++++
T Consensus 192 ~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-------------------~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 192 DMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-------------------YEEALEYLEKALK 242 (280)
T ss_dssp TTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--------------------HHHHHHHHHHHHH
T ss_pred HCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-------------------ccccccccccccc
Confidence 99999 998888888888889999999999999999999 9999999999999
Q ss_pred cCCCHHHHHHHHHH
Q 010864 343 LKPSYSVYSSALRL 356 (498)
Q Consensus 343 l~p~~~~~~~~l~~ 356 (498)
.+|+++.+...+.-
T Consensus 243 ~~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 243 LNPDDPLWLLAYAD 256 (280)
T ss_dssp HSTT-HHHHHHHHH
T ss_pred cccccccccccccc
Confidence 99999965555443
No 52
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.1e-12 Score=128.01 Aligned_cols=182 Identities=22% Similarity=0.223 Sum_probs=148.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCC---------------------------CCCCCchhh
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSL---------------------------DSTSPSKDA 186 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~---------------------------~~~~~~~~~ 186 (498)
.++..+|..|+..|.++++++ .+..-+.+.+.+|+..|....+ -+..+..++
T Consensus 234 aykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 455778888888888888888 7777788888888887764322 222455567
Q ss_pred hHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 187 LLEEACKKYDEATRL--------------------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l--------------------------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
+++.|+..|+++|.- +|.-+.-...-|..++. .|+|..|+ .+|
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk----~gdy~~Av-------~~Y 381 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK----KGDYPEAV-------KHY 381 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh----ccCHHHHH-------HHH
Confidence 788888888888764 33333444455666666 77777777 799
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCC
Q 010864 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVN 320 (498)
Q Consensus 241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~ 320 (498)
.+||..+|+++.++.|++.||.++|.+ ..|+...+++++++|++..+|..-|.++..+.+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~----------~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---------- 441 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEY----------PEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---------- 441 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH----------
Confidence 999999999999999999999999999 999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 321 PREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (498)
Q Consensus 321 ~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~ 356 (498)
|..|.++|.++++++|++..+...+..
T Consensus 442 ---------ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 442 ---------YDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred ---------HHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 999999999999999999866555443
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.44 E-value=5.2e-12 Score=141.69 Aligned_cols=140 Identities=10% Similarity=-0.017 Sum_probs=135.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
...|++++|+..|.+++..+|..+.++..+|.++...|+ +++|+..|+++++++|++..++..+|.
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~--------------~~~A~~~~~~al~~~P~~~~a~~~la~ 91 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQ--------------WQNSLTLWQKALSLEPQNDDYQRGLIL 91 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 448999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
++.. .|++++|+ ..++++++.+|+++. +..+|.++...|++ ++|+..|++++++.|++
T Consensus 92 ~l~~----~g~~~eA~-------~~l~~~l~~~P~~~~-~~~la~~l~~~g~~----------~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 92 TLAD----AGQYDEAL-------VKAKQLVSGAPDKAN-LLALAYVYKRAGRH----------WDELRAMTQALPRAPQT 149 (765)
T ss_pred HHHH----CCCHHHHH-------HHHHHHHHhCCCCHH-HHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCC
Confidence 9999 99999999 699999999999999 99999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHcch
Q 010864 295 HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 295 ~~a~~~Lg~~~~~~g~ 310 (498)
..++..++.++...+.
T Consensus 150 ~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 150 QQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999988776
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=7.6e-13 Score=126.82 Aligned_cols=188 Identities=14% Similarity=0.114 Sum_probs=160.8
Q ss_pred hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
...+...|+..+...+... ...+..++++++|+++|+.+++.+|.+.++...+|.-|+..++
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~-------- 339 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNN-------- 339 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCC--------
Confidence 3455666666666665554 2344567899999999999999999999999999999999998
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CC-CHHHHHHHH
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WN-SPQALNNWG 258 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~-~~~a~~~lg 258 (498)
.+-|+.+|++.|.+.-.+++.+.|+|.|+.. .++++-++ ..|++|+..- |+ -+++|+|||
T Consensus 340 ------PE~AlryYRRiLqmG~~speLf~NigLCC~y----aqQ~D~~L-------~sf~RAlstat~~~~aaDvWYNlg 402 (478)
T KOG1129|consen 340 ------PEMALRYYRRILQMGAQSPELFCNIGLCCLY----AQQIDLVL-------PSFQRALSTATQPGQAADVWYNLG 402 (478)
T ss_pred ------hHHHHHHHHHHHHhcCCChHHHhhHHHHHHh----hcchhhhH-------HHHHHHHhhccCcchhhhhhhccc
Confidence 9999999999999999999999999999999 99999998 5777777554 33 568999999
Q ss_pred HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (498)
Q Consensus 259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 338 (498)
.+....|++ .-|..+|+-|+.-++++.++++|||.+-...|+ ...|..++.
T Consensus 403 ~vaV~iGD~----------nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~-------------------i~~Arsll~ 453 (478)
T KOG1129|consen 403 FVAVTIGDF----------NLAKRCFRLALTSDAQHGEALNNLAVLAARSGD-------------------ILGARSLLN 453 (478)
T ss_pred eeEEeccch----------HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc-------------------hHHHHHHHH
Confidence 999999999 999999999999999999999999999999998 889999999
Q ss_pred HHHhcCCCHHHHHHH
Q 010864 339 AAHALKPSYSVYSSA 353 (498)
Q Consensus 339 ~Al~l~p~~~~~~~~ 353 (498)
.|....|+......+
T Consensus 454 ~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 454 AAKSVMPDMAEVTTN 468 (478)
T ss_pred HhhhhCccccccccc
Confidence 999999886543333
No 55
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=5e-12 Score=132.28 Aligned_cols=172 Identities=17% Similarity=0.172 Sum_probs=147.4
Q ss_pred hhhhcHHHHHHHHHHhhhcc------------------hhhHHhhccHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 010864 111 QLAEQNNAAMELINSVTGVD------------------EEGRSRQRILTFAAKRYANAIER--------NPEDYDALYNW 164 (498)
Q Consensus 111 q~~~~~~~A~~~~~~~~~~~------------------~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~l 164 (498)
...++++.|..++..++... +..+..++++++|+..|++|+.+ +|..+.++.+|
T Consensus 210 ~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL 289 (508)
T KOG1840|consen 210 AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL 289 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678888888888877771 34467789999999999999986 35667889999
Q ss_pred HHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864 165 ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (498)
Q Consensus 165 g~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A 236 (498)
|.+|...|+ |++|..++++|+++ .|.-+..+.+++.++.. ++++++|..+++++
T Consensus 290 a~ly~~~GK--------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~----~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 290 AVLYYKQGK--------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS----MNEYEEAKKLLQKA 351 (508)
T ss_pred HHHHhccCC--------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH----hcchhHHHHHHHHH
Confidence 999999999 99999999999998 33455678999999999 99999999999999
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHH
Q 010864 237 TKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ--------FDFHRAIYNLGTVLYG 307 (498)
Q Consensus 237 l~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~--------P~~~~a~~~Lg~~~~~ 307 (498)
++.|..++..+ +.-+..+.|||.+|+.+|++ ++|...|++||.+. +.....+++||..|..
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~----------~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~ 421 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKY----------KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEE 421 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHH
Confidence 99999888665 47789999999999999999 99999999999873 4456788999999987
Q ss_pred cch
Q 010864 308 LAE 310 (498)
Q Consensus 308 ~g~ 310 (498)
.++
T Consensus 422 ~k~ 424 (508)
T KOG1840|consen 422 LKK 424 (508)
T ss_pred hcc
Confidence 775
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.43 E-value=6.9e-12 Score=134.85 Aligned_cols=204 Identities=15% Similarity=0.081 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCcCCCCCCCCch
Q 010864 116 NNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPED-YDALYNWALVLQESADNVSLDSTSPSK 184 (498)
Q Consensus 116 ~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~~~~~~~~~~~ 184 (498)
.+.|...|..++... +...+..++|..|+.+|++++.++|.. ++....+|.+++.+++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~----------- 214 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGM----------- 214 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccc-----------
Confidence 455666665555444 112345688888888888888888864 4667788888888888
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (498)
Q Consensus 185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~ 264 (498)
.+.|+..|.+|++++|.++.++..||.+-.. ..+. +.|..++..+.++...++.||.+++.|+.-++..
T Consensus 215 ---~~~a~~a~~ralqLdp~~v~alv~L~~~~l~----~~d~----~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 215 ---SEKALLAFERALQLDPTCVSALVALGEVDLN----FNDS----DSYKKGVQLLQRAYKENNENPVALNHLANHFYFK 283 (1018)
T ss_pred ---hhhHHHHHHHHHhcChhhHHHHHHHHHHHHH----ccch----HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc
Confidence 9999999999999999999999999988776 4443 5677788999999999999999999999999999
Q ss_pred cCcchH---------------------------HhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchhHHhcc
Q 010864 265 SAIVPA---------------------------REKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAEDTLRTG 316 (498)
Q Consensus 265 g~~~~a---------------------------~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~g~~~~~~~ 316 (498)
|+|+.+ ++.+|++++|..+|.+++..++++ .-.++.||..|...|+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~d------ 357 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGD------ 357 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhch------
Confidence 999765 567999999999999999999998 7788999999999998
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864 317 GTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (498)
Q Consensus 317 ~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~ 360 (498)
+..+..||++.++..|++......|+.+...
T Consensus 358 -------------le~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 358 -------------LEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred -------------HHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 8999999999999999999777777665443
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.43 E-value=5.1e-12 Score=138.09 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=125.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
..+.|++++|...++.+++++|++..++.+++.++.++++ +++|+..+++++..+|+++.+++.+|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~--------------~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQG--------------IEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhcc--------------HHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.++.+ +|++++|+ ..|++++..+|+++.++.++|.++...|+. ++|...|++|+....+
T Consensus 162 ~~l~~----~g~~~~A~-------~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~----------~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDE----IGQSEQAD-------ACFERLSRQHPEFENGYVGWAQSLTRRGAL----------WRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHH----hcchHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhhCc
Confidence 99999 99999999 699999999999999999999999999999 9999999999999776
Q ss_pred CHHHHHHH
Q 010864 294 FHRAIYNL 301 (498)
Q Consensus 294 ~~~a~~~L 301 (498)
-...+.++
T Consensus 221 ~~~~~~~~ 228 (694)
T PRK15179 221 GARKLTRR 228 (694)
T ss_pred chHHHHHH
Confidence 66665553
No 58
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.42 E-value=1.3e-12 Score=116.39 Aligned_cols=121 Identities=28% Similarity=0.425 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 231 ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 231 ~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
-.|++|.+.++..+..||.++++++++|.+|.++.++....+....+++|+..|++||.++|+...+++++|.+|..++.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 35777889999999999999999999999999999997777777899999999999999999999999999999999996
Q ss_pred hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864 311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~ 359 (498)
.. +......+.|++|..||++|...+|++..|+.+|.+...
T Consensus 85 l~--------~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 85 LT--------PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H-----------HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred hc--------CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 21 112233457999999999999999999999999999864
No 59
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.41 E-value=3.4e-11 Score=128.85 Aligned_cols=210 Identities=17% Similarity=0.100 Sum_probs=137.9
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC------------CCCCC--------CCchhhhHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV------------SLDST--------SPSKDALLEEACKK 194 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~------------~~~~~--------~~~~~~~~~~A~~~ 194 (498)
+..|++++|...+.++|..+|.++.+|+.||.+|.++|+.. .|... .....|++.+|+-+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 44599999999999999999999999999999999998831 11111 12344567777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------HHHHHHH
Q 010864 195 YDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ--------------------------------ATKNYEK 242 (498)
Q Consensus 195 ~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~--------------------------------Al~~~~~ 242 (498)
|.+|++++|.+....++...+|.+ +|+...|++-|.+ |++.++.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777777777777777777766 7777777754321 2222222
Q ss_pred HHhcC--CCCHHHHHHHHHHHHHhcCcchH--------------------------------------------------
Q 010864 243 AVQLN--WNSPQALNNWGLALQELSAIVPA-------------------------------------------------- 270 (498)
Q Consensus 243 Al~l~--P~~~~a~~~lg~~l~~~g~~~~a-------------------------------------------------- 270 (498)
++... -....-++-++.++....+++.+
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 22200 00111122222222222222211
Q ss_pred --------------------------------------HhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcchh
Q 010864 271 --------------------------------------REKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 271 --------------------------------------~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~Lg~~~~~~g~~ 311 (498)
+-..|++++|+.+|..++...+. +..+|+.+|.||..+|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e- 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE- 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh-
Confidence 12357778888888888776553 46789999999999998
Q ss_pred HHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCchhhh
Q 010864 312 TLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLK 367 (498)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~l~~~~~~ 367 (498)
++.|+++|++++.+.|++...+..|.-+...+..+...
T Consensus 465 ------------------~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Eka 502 (895)
T KOG2076|consen 465 ------------------YEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKA 502 (895)
T ss_pred ------------------HHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH
Confidence 99999999999999999998777777766666655543
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=3.5e-12 Score=130.78 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010864 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (498)
Q Consensus 162 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~ 241 (498)
+..|..+++.|+ +.+|+-+|+.|+.-+|.++++|..||.+... .++-..|+ ..++
T Consensus 289 f~eG~~lm~nG~--------------L~~A~LafEAAVkqdP~haeAW~~LG~~qaE----NE~E~~ai-------~AL~ 343 (579)
T KOG1125|consen 289 FKEGCNLMKNGD--------------LSEAALAFEAAVKQDPQHAEAWQKLGITQAE----NENEQNAI-------SALR 343 (579)
T ss_pred HHHHHHHHhcCC--------------chHHHHHHHHHHhhChHHHHHHHHhhhHhhh----ccchHHHH-------HHHH
Confidence 345666666666 9999999999999999999999999999999 88888888 7999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCcchH---------------------------------------------------
Q 010864 242 KAVQLNWNSPQALNNWGLALQELSAIVPA--------------------------------------------------- 270 (498)
Q Consensus 242 ~Al~l~P~~~~a~~~lg~~l~~~g~~~~a--------------------------------------------------- 270 (498)
++++++|+|..++..||..|...|--..|
T Consensus 344 rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 344 RCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred HHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999887765555
Q ss_pred ----------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864 271 ----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA 334 (498)
Q Consensus 271 ----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~ 334 (498)
+.-.+.|++|+++|+.||..+|++...|+.||-++.+-.+ ..+|+
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-------------------s~EAI 484 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-------------------SEEAI 484 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-------------------cHHHH
Confidence 2236889999999999999999999999999999888777 78999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH
Q 010864 335 IYIAAAHALKPSYSVYSSALRLV 357 (498)
Q Consensus 335 ~~~~~Al~l~p~~~~~~~~l~~~ 357 (498)
..|.+|++|.|.+.+.+.++++-
T Consensus 485 sAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 485 SAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred HHHHHHHhcCCCeeeeehhhhhh
Confidence 99999999999999777776653
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.39 E-value=1.1e-11 Score=109.19 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=101.4
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH
Q 010864 150 AIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228 (498)
Q Consensus 150 al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~e 228 (498)
...++ ++.-+..|.+|..++..|+ +++|+..|+....++|.+...|++||.++.. +|++.+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~--------------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~----~g~~~~ 87 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKE--------------FAGAARLFQLLTIYDAWSFDYWFRLGECCQA----QKHWGE 87 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----HhhHHH
Confidence 44566 7788899999999999999 9999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
|+ ..|.+|+.++|+++.+++|+|.++...|+. +.|++.|+.||..-
T Consensus 88 AI-------~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~----------~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 88 AI-------YAYGRAAQIKIDAPQAPWAAAECYLACDNV----------CYAIKALKAVVRIC 133 (157)
T ss_pred HH-------HHHHHHHhcCCCCchHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHh
Confidence 99 799999999999999999999999999999 99999999999875
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.36 E-value=2.8e-10 Score=118.77 Aligned_cols=209 Identities=13% Similarity=-0.007 Sum_probs=165.6
Q ss_pred hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCcCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDST 180 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~g~~~~~~~~ 180 (498)
..|++..|.+.+.+..... +.....+|+++.|..+|.++.+..|++. .+...++.++...|+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~------- 168 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE------- 168 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC-------
Confidence 4467777777776665543 2334556899999999999988888875 466667888888898
Q ss_pred CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------------
Q 010864 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT----------------------- 237 (498)
Q Consensus 181 ~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al----------------------- 237 (498)
+++|...+++.++.+|++..++..++.++.. .|++++|.+.+++.+
T Consensus 169 -------~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~----~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 169 -------LHAARHGVDKLLEMAPRHKEVLKLAEEAYIR----SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred -------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 999988887654311
Q ss_pred --------HHHHHHHhcCC----CCHHHHHHHHHHHHHhcCcchHH--------------------------hhhhhHHH
Q 010864 238 --------KNYEKAVQLNW----NSPQALNNWGLALQELSAIVPAR--------------------------EKQTIVRT 279 (498)
Q Consensus 238 --------~~~~~Al~l~P----~~~~a~~~lg~~l~~~g~~~~a~--------------------------~~~~~~~~ 279 (498)
..+.++.+..| +++..+..++..+...|+++.|. -..++.+.
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 24444555566 58999999999999999998771 12466788
Q ss_pred HHHHHHHHHHhcCCCH--HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH--HHHhcCCCHHHHHHHHH
Q 010864 280 AISKFRAAIQLQFDFH--RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA--AAHALKPSYSVYSSALR 355 (498)
Q Consensus 280 Ai~~~~~Al~l~P~~~--~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~Al~l~p~~~~~~~~l~ 355 (498)
++..++++++.+|+++ ..+..+|.+++..|+ +.+|..+|+ ++++.+|+...+.....
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-------------------~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-------------------FIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-------------------HHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 9999999999999999 888999999999999 999999999 68889999987664433
Q ss_pred HH
Q 010864 356 LV 357 (498)
Q Consensus 356 ~~ 357 (498)
+.
T Consensus 379 ll 380 (409)
T TIGR00540 379 AF 380 (409)
T ss_pred HH
Confidence 33
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=6.6e-11 Score=117.71 Aligned_cols=173 Identities=16% Similarity=0.089 Sum_probs=133.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
..|++++|.+.|.++|.-+....++++++|..+..+|+ +++|+++|-+.-.+--+++.+++.++.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~--------------ldeald~f~klh~il~nn~evl~qiani 567 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN--------------LDEALDCFLKLHAILLNNAEVLVQIANI 567 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC--------------HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34666666666666666666666666666666666666 6666666666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH------------------------H
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------------------R 271 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a------------------------~ 271 (498)
|.. +.+..+|+ +.|.++..+-|+++..+..||.+|-+.|+-..| +
T Consensus 568 ye~----led~aqai-------e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 568 YEL----LEDPAQAI-------ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred HHH----hhCHHHHH-------HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 666 55655555 799999999999999999999999999987666 2
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
-...-.++||.+|++|--+.|+.......++.|+.+.|+ |+.|.+.|...+.--|.+....
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn-------------------yqka~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN-------------------YQKAFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc-------------------HHHHHHHHHHHHHhCccchHHH
Confidence 234567899999999999999999999999999999999 9999999999999999887544
Q ss_pred H
Q 010864 352 S 352 (498)
Q Consensus 352 ~ 352 (498)
.
T Consensus 698 k 698 (840)
T KOG2003|consen 698 K 698 (840)
T ss_pred H
Confidence 3
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.36 E-value=2.8e-11 Score=113.73 Aligned_cols=142 Identities=22% Similarity=0.182 Sum_probs=135.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|+-+.+..+..+++..+|.+.+.+..+|...+..|+ |.+|+..++++..++|++.++|+.+|
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------------~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------------FGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred HHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------------hHHHHHHHHHHhccCCCChhhhhHHH
Confidence 4456778888889999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.+|.+ .|++++|. ..|.+++++.|+++.+.+|+|..|.-.|++ +.|..++..+....+.
T Consensus 142 aaldq----~Gr~~~Ar-------~ay~qAl~L~~~~p~~~nNlgms~~L~gd~----------~~A~~lll~a~l~~~a 200 (257)
T COG5010 142 AALDQ----LGRFDEAR-------RAYRQALELAPNEPSIANNLGMSLLLRGDL----------EDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHH----ccChhHHH-------HHHHHHHHhccCCchhhhhHHHHHHHcCCH----------HHHHHHHHHHHhCCCC
Confidence 99999 99999999 799999999999999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcch
Q 010864 294 FHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~ 310 (498)
+..+..||+.+...+|+
T Consensus 201 d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 201 DSRVRQNLALVVGLQGD 217 (257)
T ss_pred chHHHHHHHHHHhhcCC
Confidence 99999999999999998
No 65
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2e-10 Score=107.13 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=157.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
...|+.+-|..++++.-...|+........|..+...|. +++|+++|+..|+-+|.+..++-..-.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--------------~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--------------YKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc--------------hhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 446889999999999999899999999999999999999 999999999999999999999987777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
+... +|+..+|+ +....-++.-+++.++|..++.+|...|+| ++|.-+|++.+-++|-+
T Consensus 129 ilka----~GK~l~aI-------k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 129 ILKA----QGKNLEAI-------KELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFN 187 (289)
T ss_pred HHHH----cCCcHHHH-------HHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCc
Confidence 7777 99999999 688888889999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (498)
Q Consensus 295 ~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~ 360 (498)
+..+..+|.+++.+|. .+.+..+..||.+++++.|.+.+...++.+..+.
T Consensus 188 ~l~f~rlae~~Yt~gg----------------~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGG----------------AENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999984 3347899999999999999777666666665443
No 66
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=1.5e-11 Score=108.40 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=103.0
Q ss_pred HHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864 199 TRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (498)
Q Consensus 199 l~l~-p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~ 277 (498)
..+. ++..+..|.+|..+.. .|++++|. +.|+-...+||.+...|++||.+++.+|++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~----~G~l~~A~-------~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~---------- 85 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLME----VKEFAGAA-------RLFQLLTIYDAWSFDYWFRLGECCQAQKHW---------- 85 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------
Confidence 3456 7788899999999999 99999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 350 (498)
Q Consensus 278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~ 350 (498)
.+||..|.+|+.++|+++..++|+|.|++..|+ ...|..+|+.++..-.+++.+
T Consensus 86 ~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~-------------------~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 86 GEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN-------------------VCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhccChhH
Confidence 999999999999999999999999999999999 889999999999987544433
No 67
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.35 E-value=4.6e-11 Score=114.76 Aligned_cols=150 Identities=20% Similarity=0.147 Sum_probs=126.7
Q ss_pred hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHH
Q 010864 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEA 229 (498)
Q Consensus 153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA 229 (498)
.++..++.++.+|..+...|+ +++|+..|++++..+|++. .+++.+|.++.. .|++++|
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~----~~~~~~A 89 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGD--------------YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK----SGDYAEA 89 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh----cCCHHHH
Confidence 445678999999999999999 9999999999999999875 688999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH--------
Q 010864 230 EELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI-------- 298 (498)
Q Consensus 230 ~~~~~~Al~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~-------- 298 (498)
+ ..|+++++.+|+++. +++++|.++..... ......+++++|+..|+++++.+|++..++
T Consensus 90 ~-------~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~ 160 (235)
T TIGR03302 90 I-------AAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY 160 (235)
T ss_pred H-------HHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH
Confidence 9 699999999998776 79999999987611 112334455999999999999999986543
Q ss_pred ---------HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 299 ---------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 299 ---------~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
.++|.+|+..|+ +.+|+..|.+++...|+.+
T Consensus 161 ~~~~~~~~~~~~a~~~~~~g~-------------------~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 161 LRNRLAGKELYVARFYLKRGA-------------------YVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-------------------hHHHHHHHHHHHHHCCCCc
Confidence 356777778887 8999999999999988764
No 68
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.34 E-value=2.3e-11 Score=108.44 Aligned_cols=119 Identities=31% Similarity=0.416 Sum_probs=95.0
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~ 217 (498)
--|+.|.+.++.....||.++++++++|.++.++.+.. ...+....+++|+.-|++||.++|+..+++++||.+|.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk----~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFK----QGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhcc----CcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34688999999999999999999999999999997721 11234467999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (498)
Q Consensus 218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~ 260 (498)
.+++...+..+|.++|++|..+|++|+..+|+|...+..|..+
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999987655555443
No 69
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.33 E-value=2.6e-11 Score=123.77 Aligned_cols=115 Identities=23% Similarity=0.131 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
+...|..++..|+ |++|+..|++|++++|++..+|+++|.+|.. +|++++|+ ..+
T Consensus 5 l~~~a~~a~~~~~--------------~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~----~g~~~eAl-------~~~ 59 (356)
T PLN03088 5 LEDKAKEAFVDDD--------------FALAVDLYTQAIDLDPNNAELYADRAQANIK----LGNFTEAV-------ADA 59 (356)
T ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHH
Confidence 5567888888998 9999999999999999999999999999999 99999999 699
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
++++.++|+++.+++++|.+|..+|++ ++|+.+|+++++++|++..+...++.|...+.+
T Consensus 60 ~~Al~l~P~~~~a~~~lg~~~~~lg~~----------~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 60 NKAIELDPSLAKAYLRKGTACMKLEEY----------QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999999999999998766643
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=3.2e-10 Score=117.77 Aligned_cols=186 Identities=13% Similarity=0.053 Sum_probs=155.3
Q ss_pred hhhhcHHHHHHHHHHhhhcch-----------hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCC
Q 010864 111 QLAEQNNAAMELINSVTGVDE-----------EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (498)
Q Consensus 111 q~~~~~~~A~~~~~~~~~~~~-----------~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~ 179 (498)
...++++.+..++.++..... ..+...|++++|+..+++.++.+|+++.++..++.+|...|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gd------ 202 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGA------ 202 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh------
Confidence 456778888888888776541 234557999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHH
Q 010864 180 TSPSKDALLEEACKKYDEATRL------------------------------------------CPTLHDAFYNWAIAIS 217 (498)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~Al~l------------------------------------------~p~~~~a~~~lg~~~~ 217 (498)
+++|++.+.+..+. .|+++.++..++..+.
T Consensus 203 --------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 203 --------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI 274 (398)
T ss_pred --------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence 77777554444432 3446667777788888
Q ss_pred HHHHHcCCHHHHHHHHH------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhh
Q 010864 218 DRAKMRGRTKEAEELWK------------------------QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREK 273 (498)
Q Consensus 218 ~~~~~~g~~~eA~~~~~------------------------~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~ 273 (498)
. .|+.++|.+..+ ++++..++.++.+|+++..+..+|.++...+++
T Consensus 275 ~----~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~------ 344 (398)
T PRK10747 275 E----CDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW------ 344 (398)
T ss_pred H----CCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH------
Confidence 8 999999997763 477888889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344 (498)
Q Consensus 274 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 344 (498)
++|..+|++++++.|++. .+..|+.++..+|+ .++|..+|++++.+.
T Consensus 345 ----~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~-------------------~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 345 ----QEASLAFRAALKQRPDAY-DYAWLADALDRLHK-------------------PEEAAAMRRDGLMLT 391 (398)
T ss_pred ----HHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhh
Confidence 999999999999999964 46679999999999 789999999988763
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.32 E-value=6.7e-10 Score=115.40 Aligned_cols=205 Identities=13% Similarity=0.047 Sum_probs=166.2
Q ss_pred hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCcCCCCCCC
Q 010864 113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDAL-YNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~-~~lg~~~~~~g~~~~~~~~~ 181 (498)
.|++..|.+.+.+..... ...-...|+++.|..+|.++.+.+|++..+. ...+.++...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~-------- 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNE-------- 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCC--------
Confidence 356666666665544331 1222568999999999999999999986444 445899999999
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------------
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK----------------------- 238 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~----------------------- 238 (498)
+++|+..++++++.+|++..++..++.+|.. .|++++|++.+.+..+
T Consensus 169 ------~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 169 ------NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred ------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999966643221
Q ss_pred --------HHHHHH----hcCCCCHHHHHHHHHHHHHhcCcchHH---------------------hhhhhHHHHHHHHH
Q 010864 239 --------NYEKAV----QLNWNSPQALNNWGLALQELSAIVPAR---------------------EKQTIVRTAISKFR 285 (498)
Q Consensus 239 --------~~~~Al----~l~P~~~~a~~~lg~~l~~~g~~~~a~---------------------~~~~~~~~Ai~~~~ 285 (498)
.+.+.. ...|+++.++..++..+...|+.++|. -..++.++++...+
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHH
Confidence 111111 234668999999999999999998871 12488999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 286 AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 286 ~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
+.++.+|+++..+..+|.++...++ +.+|..+|++++++.|++..+....
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~~~-------------------~~~A~~~le~al~~~P~~~~~~~La 368 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKHGE-------------------WQEASLAFRAALKQRPDAYDYAWLA 368 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999998755433
No 72
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=6e-10 Score=103.99 Aligned_cols=202 Identities=15% Similarity=0.071 Sum_probs=158.1
Q ss_pred hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864 113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~ 182 (498)
.++.+.|...++.+-... +.-+-..|.+++|+++|+..++-||.|..++...-.+...+|+
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--------- 135 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK--------- 135 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC---------
Confidence 355556666665543333 2223457999999999999999999999999999889999999
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
--+||+.+..-++..+++.++|..|+.+|.. .|+|+.|. -+|++.+-++|.++-.+..+|.+++
T Consensus 136 -----~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~----~~~f~kA~-------fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 136 -----NLEAIKELNEYLDKFMNDQEAWHELAEIYLS----EGDFEKAA-------FCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred -----cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----HhHHHHHH-------HHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7799999999999999999999999999999 88888888 7999999999999999999999999
Q ss_pred HhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864 263 ELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342 (498)
Q Consensus 263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 342 (498)
-+|.. .++.-|.++|.++++++|.+..+++.+-.+...+.....+...... +....++..-++.-+++...
T Consensus 200 t~gg~-------eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~~K--~~a~~~l~~~aas~l~r~~q 270 (289)
T KOG3060|consen 200 TQGGA-------ENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKRKK--DVAAPDLISLAASQLERISQ 270 (289)
T ss_pred HHhhH-------HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhhhh--hhhhhhHHHhHHHHHHHHHH
Confidence 99875 6779999999999999999999998887776655532222222111 13334445556666666664
Q ss_pred cCCCHH
Q 010864 343 LKPSYS 348 (498)
Q Consensus 343 l~p~~~ 348 (498)
..++..
T Consensus 271 ~s~~~~ 276 (289)
T KOG3060|consen 271 KSKNKL 276 (289)
T ss_pred hccchh
Confidence 444443
No 73
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.6e-11 Score=119.74 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=146.2
Q ss_pred hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-----
Q 010864 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH----- 206 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~----- 206 (498)
.++.-++++++|+..--..+++++.+.++++.+|.+++..+. .+.|+..|+++|.++|++.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~--------------~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN--------------ADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc--------------hHHHHHHHhhhhccChhhhhHHhH
Confidence 455668999999999999999999999999999999999999 9999999999999999864
Q ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHhcCcchHHhhhh
Q 010864 207 -------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQT 275 (498)
Q Consensus 207 -------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~a~~~~~ 275 (498)
..+..-|.-..+ .|++..|. ++|..+|.++|++ +..|.|++.+...+|+.
T Consensus 243 ~~~~k~le~~k~~gN~~fk----~G~y~~A~-------E~Yteal~idP~n~~~naklY~nra~v~~rLgrl-------- 303 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFK----NGNYRKAY-------ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRL-------- 303 (486)
T ss_pred hhhHHHHHHHHhhhhhHhh----ccchhHHH-------HHHHHhhcCCccccchhHHHHHHhHhhhcccCCc--------
Confidence 344555666666 89999888 6999999999985 56799999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 276 ~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
++|+...+.|+.|++.+..++...|.|+..+++ |..|..+|+++.++..+
T Consensus 304 --~eaisdc~~Al~iD~syikall~ra~c~l~le~-------------------~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 304 --REAISDCNEALKIDSSYIKALLRRANCHLALEK-------------------WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred --hhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999 99999999999999877
No 74
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.31 E-value=1.4e-10 Score=129.01 Aligned_cols=163 Identities=9% Similarity=0.037 Sum_probs=137.3
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
.+++|+++.|+..|+++++.+|+++.+.+.+..++...|+ +++|+.++++++.-.|........+|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~--------------~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGR--------------DQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCC--------------cHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 4679999999999999999999997555599999999999 99999999999933444555556668
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.++.. +|++++|+ ..|+++++.+|+++.++..++.++...++. ++|+..+++++..+|+
T Consensus 110 ~ly~~----~gdyd~Ai-------ely~kaL~~dP~n~~~l~gLa~~y~~~~q~----------~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 110 RAYRN----EKRWDQAL-------ALWQSSLKKDPTNPDLISGMIMTQADAGRG----------GVVLKQATELAERDPT 168 (822)
T ss_pred HHHHH----cCCHHHHH-------HHHHHHHhhCCCCHHHHHHHHHHHhhcCCH----------HHHHHHHHHhcccCcc
Confidence 89999 99999999 699999999999999999999999999999 9999999999999998
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
+... ..++.++...++ +.+|+..|+++++++|++..+.
T Consensus 169 ~~~~-l~layL~~~~~~-------------------~~~AL~~~ekll~~~P~n~e~~ 206 (822)
T PRK14574 169 VQNY-MTLSYLNRATDR-------------------NYDALQASSEAVRLAPTSEEVL 206 (822)
T ss_pred hHHH-HHHHHHHHhcch-------------------HHHHHHHHHHHHHhCCCCHHHH
Confidence 5543 444444444444 5569999999999999998543
No 75
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=4.5e-10 Score=108.65 Aligned_cols=182 Identities=13% Similarity=0.107 Sum_probs=144.9
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
+..|++..||+...+.|++.|-++..+..++.+|...|+ ...||..++.+-++..++.+.+|.+..
T Consensus 166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e--------------~k~AI~Dlk~askLs~DnTe~~ykis~ 231 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE--------------PKKAIHDLKQASKLSQDNTEGHYKISQ 231 (504)
T ss_pred hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc--------------HHHHHHHHHHHHhccccchHHHHHHHH
Confidence 345888899999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHhcCcchH------------
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA------------LQELSAIVPA------------ 270 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~------------l~~~g~~~~a------------ 270 (498)
++.. .|+...++ ...+.+|++||++-.++-.+-.+ ..+.+.|-++
T Consensus 232 L~Y~----vgd~~~sL-------~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 232 LLYT----VGDAENSL-------KEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred HHHh----hhhHHHHH-------HHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 8888 88888888 56677777777654443222111 1111122111
Q ss_pred ----------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHH
Q 010864 271 ----------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSA 334 (498)
Q Consensus 271 ----------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~ 334 (498)
+...+++-+||..+.++|.++|++..++...+.+|...-. |+.|+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~-------------------YD~AI 361 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM-------------------YDDAI 361 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH-------------------HHHHH
Confidence 3346777999999999999999999999999999887665 99999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864 335 IYIAAAHALKPSYSVYSSALRLVRSM 360 (498)
Q Consensus 335 ~~~~~Al~l~p~~~~~~~~l~~~~~~ 360 (498)
..|++|+++++++.....++...+++
T Consensus 362 ~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 362 HDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 99999999999999888777665544
No 76
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.9e-11 Score=119.30 Aligned_cols=141 Identities=23% Similarity=0.218 Sum_probs=124.0
Q ss_pred hHHhhccHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864 133 GRSRQRILTFAAKRYANAIE--------------------------RNPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~--------------------------~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~ 186 (498)
.+...++++.|+.+|++++. ++|.-+.--...|+.++..|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd------------- 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD------------- 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC-------------
Confidence 34555666666666666654 345556666777888888888
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
|..|+..|.+||..+|+++..|.|+|.||.+ +|.+..|+ +.++++++++|++..+|..-|.++..+.+
T Consensus 374 -y~~Av~~YteAIkr~P~Da~lYsNRAac~~k----L~~~~~aL-------~Da~~~ieL~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 374 -YPEAVKHYTEAIKRDPEDARLYSNRAACYLK----LGEYPEAL-------KDAKKCIELDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred -HHHHHHHHHHHHhcCCchhHHHHHHHHHHHH----HhhHHHHH-------HHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 68999999999999999999999999999
Q ss_pred cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (498)
Q Consensus 267 ~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~ 308 (498)
| +.|++.|.++++++|++.++...+..|+..+
T Consensus 442 y----------dkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 442 Y----------DKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred H----------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9 9999999999999999999999999998864
No 77
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.29 E-value=5.9e-11 Score=121.19 Aligned_cols=107 Identities=17% Similarity=0.163 Sum_probs=101.9
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
.+..|+|++|+.+|.++|+++|+++.+|+++|.+|..+|+ +++|+..+++++.++|++..+|+++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~--------------~~eAl~~~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN--------------FTEAVADANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 4678999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
.+|.. +|++++|+ ..|+++++++|++..+...++.+...+.
T Consensus 78 ~~~~~----lg~~~eA~-------~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 78 TACMK----LEEYQTAK-------AALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHH----hCCHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999 99999999 6999999999999999999988877664
No 78
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.28 E-value=7.3e-10 Score=115.60 Aligned_cols=198 Identities=16% Similarity=0.059 Sum_probs=152.3
Q ss_pred hhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC----
Q 010864 112 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS---- 176 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~---- 176 (498)
..++.+.+..++.++.... ...+...|+++.|...+++.++..|+++.++..++.+|...|++..
T Consensus 130 ~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4578888888888764432 1223447999999999999999999999999999999999998410
Q ss_pred ---------CCCCCC------chhhhH-----HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864 177 ---------LDSTSP------SKDALL-----EEACKKYDEATRLCP----TLHDAFYNWAIAISDRAKMRGRTKEAEEL 232 (498)
Q Consensus 177 ---------~~~~~~------~~~~~~-----~~A~~~~~~Al~l~p----~~~~a~~~lg~~~~~~~~~~g~~~eA~~~ 232 (498)
.++... ...+.+ +++.+.+.++....| ++...+..++..+.. .|++++|++.
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~----~g~~~~A~~~ 285 (409)
T TIGR00540 210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLID----CDDHDSAQEI 285 (409)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHH----CCChHHHHHH
Confidence 000000 011112 222335666666666 478888888888888 9999999977
Q ss_pred HHH-----------------------------HHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864 233 WKQ-----------------------------ATKNYEKAVQLNWNSP--QALNNWGLALQELSAIVPAREKQTIVRTAI 281 (498)
Q Consensus 233 ~~~-----------------------------Al~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai 281 (498)
.++ +++.++++++.+|+++ ..+..+|.++.+.|++ ++|.
T Consensus 286 l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~----------~~A~ 355 (409)
T TIGR00540 286 IFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF----------IEAA 355 (409)
T ss_pred HHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH----------HHHH
Confidence 633 5667888889999999 8999999999999999 9999
Q ss_pred HHHH--HHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864 282 SKFR--AAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (498)
Q Consensus 282 ~~~~--~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 343 (498)
++|+ ++++.+|+... +..+|.++..+|+ ..+|..+|++++.+
T Consensus 356 ~~le~a~a~~~~p~~~~-~~~La~ll~~~g~-------------------~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 356 DAFKNVAACKEQLDAND-LAMAADAFDQAGD-------------------KAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC-------------------HHHHHHHHHHHHHH
Confidence 9999 68888998665 5699999999999 78888888887653
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=1.3e-10 Score=118.63 Aligned_cols=161 Identities=14% Similarity=0.054 Sum_probs=135.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
....|++++|+..++++++.+|++..++.. +..+...|+. .+....+.+.+......+|....++..+|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 121 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDF----------SGMRDHVARVLPLWAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccc----------ccCchhHHHHHhccCcCCCCcHHHHHHHH
Confidence 456899999999999999999999988887 7777777761 01134444444444456788888899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.++.. +|++++|+ ..++++++++|++..++..+|.++.+.|++ ++|+.++++++...|.
T Consensus 122 ~~~~~----~G~~~~A~-------~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 122 FGLEE----AGQYDRAE-------EAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHH----cCCHHHHH-------HHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCC
Confidence 99999 99999999 699999999999999999999999999999 9999999999999874
Q ss_pred CH----HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 294 FH----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 294 ~~----~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
.+ ..+..+|.++..+|+ +.+|..+|++++...|
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~-------------------~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGD-------------------YEAALAIYDTHIAPSA 217 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHhcccc
Confidence 33 346689999999999 8999999999987776
No 80
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.27 E-value=6.3e-10 Score=120.03 Aligned_cols=196 Identities=12% Similarity=0.070 Sum_probs=141.6
Q ss_pred hhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 113 AEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
.+++..|+.+|..++... +.++.++++.+.|+..|.++++++|.+..++..||.+-....+.
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~------- 249 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDS------- 249 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccch-------
Confidence 466788889998877776 34567889999999999999999999999999999888776551
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH-----------------------------
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEEL----------------------------- 232 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~----------------------------- 232 (498)
..+..+...+.++...+++++.+.+.|+.-++. .|+|..+..+
T Consensus 250 ----~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyf----K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 250 ----DSYKKGVQLLQRAYKENNENPVALNHLANHFYF----KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred ----HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhh----cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 225556666666666665555544444444443 3333333321
Q ss_pred -HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 233 -WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 233 -~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
|++|..+|.++++.++++ .-.++.||..|...|++ +.|+.+|++.+...|++.+...-||.+|...++
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLKQLPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence 122337888888888887 77788888888888888 999999999999999999999999999988852
Q ss_pred hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 311 DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
. .+..+.|..+..++++..|.+.
T Consensus 392 ~---------------~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 392 K---------------QEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred h---------------hHHHHHHHHHHHHHHhcccccH
Confidence 1 1124556666666666666655
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=4.6e-10 Score=118.52 Aligned_cols=165 Identities=26% Similarity=0.283 Sum_probs=126.7
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFYNWAIAI 216 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~~lg~~~ 216 (498)
....+++..++++++.+|.|+.+.+.++.-|..+++ ++.|....++++++++ +++.+|..|+.++
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~--------------l~sAl~~~~eaL~l~~~~~~~~whLLALvl 523 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQ--------------LTSALDYAREALALNRGDSAKAWHLLALVL 523 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 445678888888888888888888888888888888 8888888888888844 4677888888888
Q ss_pred HHHHHHcCCHHHHHHH-----------------------------------------H----------------------
Q 010864 217 SDRAKMRGRTKEAEEL-----------------------------------------W---------------------- 233 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~-----------------------------------------~---------------------- 233 (498)
.. .+++.+|+.. |
T Consensus 524 Sa----~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 524 SA----QKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred hh----hhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 87 7777777633 1
Q ss_pred --------------------------------------------------------------------------------
Q 010864 234 -------------------------------------------------------------------------------- 233 (498)
Q Consensus 234 -------------------------------------------------------------------------------- 233 (498)
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence
Q ss_pred ---------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH--HHHHHHHh
Q 010864 234 ---------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS--KFRAAIQL 290 (498)
Q Consensus 234 ---------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~--~~~~Al~l 290 (498)
.+|...|.-|+.+||+++.....+|.++.+.|+. .-|.. .+..|+++
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~----------~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP----------RLAEKRSLLSDALRL 749 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----------chHHHHHHHHHHHhh
Confidence 1244555555566666666666666666666654 55655 88999999
Q ss_pred cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864 291 QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (498)
Q Consensus 291 ~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~ 349 (498)
+|.++++|++||.++..+|+ ..+|.+||..|+.+.+.+++
T Consensus 750 dp~n~eaW~~LG~v~k~~Gd-------------------~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 750 DPLNHEAWYYLGEVFKKLGD-------------------SKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCCHHHHHHHHHHHHHccc-------------------hHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999998 88999999999999988774
No 82
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.22 E-value=3.5e-10 Score=103.03 Aligned_cols=130 Identities=22% Similarity=0.199 Sum_probs=105.4
Q ss_pred ccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNW 212 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~l 212 (498)
+.|..+...+...++.++.+ ..+|+++|.++..+|+ +++|+..|++++.+.|+ .+.+++++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~--------------~~~A~~~~~~al~l~~~~~~~~~~~~~l 78 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGE--------------YAEALQNYYEAMRLEIDPYDRSYILYNI 78 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 34555556665555555555 6778999999999999 99999999999999776 34589999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-------CcchHHhhhhhHHHHHHHHH
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-------AIVPAREKQTIVRTAISKFR 285 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g-------~~~~a~~~~~~~~~Ai~~~~ 285 (498)
|.++.. +|++++|+ ..|++++.++|.+...++++|.++..+| ++ .....++++|+.+|+
T Consensus 79 g~~~~~----~g~~~eA~-------~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~---~~A~~~~~~a~~~~~ 144 (168)
T CHL00033 79 GLIHTS----NGEHTKAL-------EYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS---EIAEAWFDQAAEYWK 144 (168)
T ss_pred HHHHHH----cCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH---HHHHHHHHHHHHHHH
Confidence 999999 99999999 6889999999999999999999999554 44 333455678888888
Q ss_pred HHHHhcCCCH
Q 010864 286 AAIQLQFDFH 295 (498)
Q Consensus 286 ~Al~l~P~~~ 295 (498)
+++..+|++.
T Consensus 145 ~a~~~~p~~~ 154 (168)
T CHL00033 145 QAIALAPGNY 154 (168)
T ss_pred HHHHhCcccH
Confidence 8888888654
No 83
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.20 E-value=8.2e-10 Score=101.04 Aligned_cols=128 Identities=22% Similarity=0.281 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEE 231 (498)
Q Consensus 155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~ 231 (498)
+..+.+++++|.++...|+ +++|+.+|++++++.|+. ..+++++|.++.. .|++++|+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~- 92 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGE--------------YAEALENYEEALKLEEDPNDRSYILYNMGIIYAS----NGEHDKAL- 92 (172)
T ss_pred hhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH----cCCHHHHH-
Confidence 4567789999999999999 999999999999997763 5689999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864 232 LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (498)
Q Consensus 232 ~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~ 307 (498)
..|++++..+|++..++.++|.++..+|+...+ ......+++|+.+++++++++|++ +..++..+..
T Consensus 93 ------~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~ 163 (172)
T PRK02603 93 ------EYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKT 163 (172)
T ss_pred ------HHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHh
Confidence 688999999999999999999999999986433 234556788888888888889887 5555666665
Q ss_pred cch
Q 010864 308 LAE 310 (498)
Q Consensus 308 ~g~ 310 (498)
.|+
T Consensus 164 ~~~ 166 (172)
T PRK02603 164 TGR 166 (172)
T ss_pred cCc
Confidence 554
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.19 E-value=8.7e-10 Score=100.43 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=99.0
Q ss_pred HHhhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPE---DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~ 210 (498)
+..+|++++|+..|++++.+.|+ .+.+|+++|.+|...|+ +++|+..|++++.++|.+...++
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------------~~eA~~~~~~Al~~~~~~~~~~~ 110 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------------HTKALEYYFQALERNPFLPQALN 110 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcCcHHHHH
Confidence 45689999999999999999776 34689999999999999 99999999999999999999999
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 211 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 211 ~lg~~~~~~---~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
++|.++..+ +..+|++++|+..+++|+..|++++..+|.+. ...+..+...|++
T Consensus 111 ~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~ 167 (168)
T CHL00033 111 NMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence 999999822 11289999999999999999999999999765 3334444445544
No 85
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=1.7e-09 Score=110.14 Aligned_cols=171 Identities=10% Similarity=-0.023 Sum_probs=137.6
Q ss_pred ccHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 138 RILTFAAKRYANAI---ERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 138 g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
...+.|..+|.+++ +++|+++.+|..++.+++...- .+.+. ......+|...-++|++++|+++.++..+|.
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~----~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~ 346 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL----HGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH----hcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45678999999999 9999999999999999998743 11122 5566899999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
++.. .++++.|. ..|++|+.++|+++.+|+..|.++...|+. ++|+..+++|++++|.-
T Consensus 347 ~~~~----~~~~~~a~-------~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~----------~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 347 ITGL----SGQAKVSH-------ILFEQAKIHSTDIASLYYYRALVHFHNEKI----------EEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHh----hcchhhHH-------HHHHHHhhcCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhccCchh
Confidence 9998 99999999 799999999999999999999999999999 99999999999999986
Q ss_pred HHHHHH-HHH-HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 295 HRAIYN-LGT-VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 295 ~~a~~~-Lg~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
..+-.. +-. .|+..+ ++.++..|-+-.+.........+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (458)
T PRK11906 406 RKAVVIKECVDMYVPNP--------------------LKNNIKLYYKETESESHRVIIDNIL 447 (458)
T ss_pred hHHHHHHHHHHHHcCCc--------------------hhhhHHHHhhccccccchhhHHHHH
Confidence 554333 222 455444 4666666665544444433333333
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=3.1e-09 Score=105.96 Aligned_cols=170 Identities=14% Similarity=0.041 Sum_probs=155.7
Q ss_pred hhhcHHHHHHHHHHhhhcchh----------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
..|++++|...|..+++.+.. .+..+|++++|+++|-+.-.+--++++.++.++.+|..+.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led-------- 573 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED-------- 573 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC--------
Confidence 357888999999888887733 24568999999999999988888999999999999999999
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH---------------------------H
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW---------------------------K 234 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~---------------------------~ 234 (498)
..+||+.|.++..+-|+++..+..||.+|-+ .|+-.+|.+++ +
T Consensus 574 ------~aqaie~~~q~~slip~dp~ilskl~dlydq----egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 574 ------PAQAIELLMQANSLIPNDPAILSKLADLYDQ----EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred ------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhc----ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999 99999998763 7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (498)
Q Consensus 235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g 309 (498)
+++.+|++|--+.|+.......++.|+.+.|+| +.|...|+..-+.-|.+.+.+.-|-.+.-.+|
T Consensus 644 kai~y~ekaaliqp~~~kwqlmiasc~rrsgny----------qka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 644 KAINYFEKAALIQPNQSKWQLMIASCFRRSGNY----------QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 899999999999999999999999999999999 99999999999999999999998888888888
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=1.6e-09 Score=110.51 Aligned_cols=162 Identities=15% Similarity=-0.010 Sum_probs=136.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~ 211 (498)
...|+.+.+...|.++....|.+ .+..+..|.+++..|+ +++|++.++++++.+|++..++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGD--------------LPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCcHHHHHH
Confidence 34678888899999998888754 5678889999999999 999999999999999999988876
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
+..+.. .|++..+..... +.+......+|....++.++|.++..+|++ ++|+..|+++++++
T Consensus 83 -~~~~~~----~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~ 144 (355)
T cd05804 83 -HLGAFG----LGDFSGMRDHVA---RVLPLWAPENPDYWYLLGMLAFGLEEAGQY----------DRAEEAARRALELN 144 (355)
T ss_pred -hHHHHH----hcccccCchhHH---HHHhccCcCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhC
Confidence 667766 655554443222 233334567788889999999999999999 99999999999999
Q ss_pred CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864 292 FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347 (498)
Q Consensus 292 P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 347 (498)
|++..++..+|.+|+..|+ +++|..++.+++...|..
T Consensus 145 p~~~~~~~~la~i~~~~g~-------------------~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGR-------------------FKEGIAFMESWRDTWDCS 181 (355)
T ss_pred CCCcHHHHHHHHHHHHcCC-------------------HHHHHHHHHhhhhccCCC
Confidence 9999999999999999999 899999999999988743
No 88
>PRK11906 transcriptional regulator; Provisional
Probab=99.14 E-value=4.4e-09 Score=107.13 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=131.3
Q ss_pred HHhCCCCH---HHH----HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHH
Q 010864 151 IERNPEDY---DAL----YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT---RLCPTLHDAFYNWAIAISDRA 220 (498)
Q Consensus 151 l~~~P~~~---~a~----~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al---~l~p~~~~a~~~lg~~~~~~~ 220 (498)
...-|.+. ++| +.+|......+. ....++|+..|.+|+ .++|+++.+|..++.++..++
T Consensus 241 ~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t-----------~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~ 309 (458)
T PRK11906 241 VRLAKQDQGYKNHYLSDEMLAGKKELYDFT-----------PESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA 309 (458)
T ss_pred hcCCCCCcccccchhhHHHHHHHHHhhccC-----------HHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH
Confidence 34446665 555 667777666554 234889999999999 999999999999999998854
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (498)
Q Consensus 221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 300 (498)
.+ |-.+ ....-.+|+...++|++++|+++.++..+|.++...|++ +.|+..|++|+.++|+++.+|+.
T Consensus 310 ~~-g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~~ 377 (458)
T PRK11906 310 LH-GKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYYY 377 (458)
T ss_pred Hh-cCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHHH
Confidence 33 2222 333446677899999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
.|.++...|+ ..+|...++++++++|-..
T Consensus 378 ~~~~~~~~G~-------------------~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 378 RALVHFHNEK-------------------IEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHHHHHcCC-------------------HHHHHHHHHHHhccCchhh
Confidence 9999999999 8999999999999999765
No 89
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.13 E-value=2.1e-09 Score=114.39 Aligned_cols=132 Identities=19% Similarity=0.145 Sum_probs=114.8
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFYNWAI 214 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~p~~~~a~~~lg~ 214 (498)
.+.+..|+.+|++|++++|+++.+|..++.+|.....+ .......+.++.....+++.+ +|.++.+|..+|.
T Consensus 355 ~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~------~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~ 428 (517)
T PRK10153 355 AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQ------QPLDEKQLAALSTELDNIVALPELNVLPRIYEILAV 428 (517)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHH
Confidence 35688999999999999999999999999998776441 112234577888888888775 7788899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
.+.. .|++++|. ..|++|+.++| +..+|..+|.++...|++ ++|+..|++|++++|.+
T Consensus 429 ~~~~----~g~~~~A~-------~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~----------~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 429 QALV----KGKTDEAY-------QAINKAIDLEM-SWLNYVLLGKVYELKGDN----------RLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHh----cCCHHHHH-------HHHHHHHHcCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCC
Confidence 9988 99999999 79999999999 589999999999999999 99999999999999998
Q ss_pred HH
Q 010864 295 HR 296 (498)
Q Consensus 295 ~~ 296 (498)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 85
No 90
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.12 E-value=1.7e-09 Score=91.63 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
+++++.+|..+...|+ +++|++.|.+++..+|++ ..+++.+|.++.. .|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~---- 59 (119)
T TIGR02795 2 EEAYYDAALLVLKAGD--------------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA----QGKYADAA---- 59 (119)
T ss_pred cHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh----hccHHHHH----
Confidence 4678999999999999 999999999999999886 5789999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 235 QATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 235 ~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
..|++++..+|++ ..++.++|.++..+|++ ++|+.+|+++++..|++..+..
T Consensus 60 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 60 ---KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDK----------EKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred ---HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCCh----------HHHHHHHHHHHHHCcCChhHHH
Confidence 6888888888875 68899999999999999 9999999999999999876544
No 91
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.3e-10 Score=109.69 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=121.8
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPEDYD------------ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA 198 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~------------a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~A 198 (498)
+.+++...+.+.|+..|+++|.++|++.+ .|...|+-.+..|. |.+|.++|..|
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~--------------y~~A~E~Ytea 275 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN--------------YRKAYECYTEA 275 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc--------------hhHHHHHHHHh
Confidence 34456678999999999999999998743 46677777777777 99999999999
Q ss_pred HHhCCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864 199 TRLCPTL----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274 (498)
Q Consensus 199 l~l~p~~----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~ 274 (498)
|.++|++ +..|.|++.+... +|+..+|+ ..++.|+.+||.+..++...|.++..++++
T Consensus 276 l~idP~n~~~naklY~nra~v~~r----Lgrl~eai-------sdc~~Al~iD~syikall~ra~c~l~le~~------- 337 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIR----LGRLREAI-------SDCNEALKIDSSYIKALLRRANCHLALEKW------- 337 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcc----cCCchhhh-------hhhhhhhhcCHHHHHHHHHHHHHHHHHHHH-------
Confidence 9999984 5689999999999 99999999 699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~ 308 (498)
++|++.|++|++...+ ......|..+-..+
T Consensus 338 ---e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 338 ---EEAVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred ---HHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 9999999999999776 55544454444433
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=5.5e-09 Score=103.42 Aligned_cols=189 Identities=10% Similarity=0.041 Sum_probs=160.1
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC--------------------CCCCCCchhhhHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS--------------------LDSTSPSKDALLEE 190 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~--------------------~~~~~~~~~~~~~~ 190 (498)
+.+++..|++++|+..|+++..+||.+..++-..|.++...|+.-. ..++-.....++..
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHH
Confidence 3457778999999999999999999999888888888877776310 01112234467999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (498)
Q Consensus 191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a 270 (498)
|+.+-+|++.++|++..++...|.++.. +|+..+|+ -.|+.|..+.|.....|..|-.+|...|++.+|
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~----~~R~~~A~-------IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIA----LERHTQAV-------IAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHh----ccchHHHH-------HHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 9999999999999999999999999999 99999999 799999999999999999999999999999877
Q ss_pred H--------------------------hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010864 271 R--------------------------EKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 324 (498)
Q Consensus 271 ~--------------------------~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~ 324 (498)
. ....--++|.++++++++++|++..+.+.++.++...|+
T Consensus 388 ~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~-------------- 453 (564)
T KOG1174|consen 388 NALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP-------------- 453 (564)
T ss_pred HHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc--------------
Confidence 1 112234788999999999999999999999999988888
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864 325 SPNELYSQSAIYIAAAHALKPSYSV 349 (498)
Q Consensus 325 ~~~~~~~~A~~~~~~Al~l~p~~~~ 349 (498)
+..++..+++.+...||...
T Consensus 454 -----~~D~i~LLe~~L~~~~D~~L 473 (564)
T KOG1174|consen 454 -----TKDIIKLLEKHLIIFPDVNL 473 (564)
T ss_pred -----cchHHHHHHHHHhhccccHH
Confidence 78889999999999998873
No 93
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2.4e-09 Score=103.19 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=111.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~ 217 (498)
...+.-+...+.-|..||+|.+-|..||.+|..+|+ +..|...|.+|+++.|++++.+..+|.++.
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~--------------~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGR--------------ASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346778888999999999999999999999999999 999999999999999999999999999988
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (498)
Q Consensus 218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~ 295 (498)
... ......++. ..+++++.+||++..+++.||..+.+.|+| ++|+..++..+...|.+.
T Consensus 202 ~~a-~~~~ta~a~-------~ll~~al~~D~~~iral~lLA~~afe~g~~----------~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 202 YQA-GQQMTAKAR-------ALLRQALALDPANIRALSLLAFAAFEQGDY----------AEAAAAWQMLLDLLPADD 261 (287)
T ss_pred Hhc-CCcccHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCCC
Confidence 721 011233344 799999999999999999999999999999 999999999999877553
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.10 E-value=6.9e-09 Score=100.01 Aligned_cols=171 Identities=12% Similarity=0.063 Sum_probs=138.0
Q ss_pred hhhhcHHHHHHHHHHhhhcc--------------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC
Q 010864 111 QLAEQNNAAMELINSVTGVD--------------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS 176 (498)
Q Consensus 111 q~~~~~~~A~~~~~~~~~~~--------------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 176 (498)
+..|+.+.|+.+...+...- +..++..|-+|.|...|.......---..++-.|-.+|....+
T Consensus 80 RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre--- 156 (389)
T COG2956 80 RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE--- 156 (389)
T ss_pred HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH---
Confidence 44577888888777666544 3446778999999999998877665667789999999999998
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864 177 LDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (498)
Q Consensus 177 ~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~ 256 (498)
+++||+.-++.+++.+.... ..++..|+. +.+-..+...+++|+..+.+|++.||++..+-..
T Consensus 157 -----------W~KAId~A~~L~k~~~q~~~--~eIAqfyCE----LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 157 -----------WEKAIDVAERLVKLGGQTYR--VEIAQFYCE----LAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred -----------HHHHHHHHHHHHHcCCccch--hHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 99999999999999887432 234444444 3333344444555558999999999999999999
Q ss_pred HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcchh
Q 010864 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGTVLYGLAED 311 (498)
Q Consensus 257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~~~~~~g~~ 311 (498)
+|.+....|+| +.|++.++.+++.+|++ +++...|-.||..+|+.
T Consensus 220 lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 220 LGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred hhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999 99999999999999998 57889999999999984
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.09 E-value=5e-09 Score=115.87 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=137.8
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCC----CCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLD----STSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~----~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~ 209 (498)
+...+++++|+..++.+++.+|+...+|+.+|.++++.++.-... ........++ .++++|...+...+++-.++
T Consensus 41 ~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 41 YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLAL 119 (906)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHH
Confidence 445899999999999999999999999999999999988720000 0011122234 56666666666677777999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH----------HhhhhhHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA----------REKQTIVRT 279 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a----------~~~~~~~~~ 279 (498)
+.||.||.+ +|+.++|. ..|+++++++|+|+.+++|+|..|... +.++| +-..+.+..
T Consensus 120 ~~LA~~Ydk----~g~~~ka~-------~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~ 187 (906)
T PRK14720 120 RTLAEAYAK----LNENKKLK-------GVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHH----cCChHHHH-------HHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence 999999999 99999999 799999999999999999999999999 88333 111233444
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH-HcchhHHhccCCCCC--CCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 280 AISKFRAAIQLQFDFHRAIYNLGTVLY-GLAEDTLRTGGTVNP--REVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 280 Ai~~~~~Al~l~P~~~~a~~~Lg~~~~-~~g~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
+...+.+.+..+|++.+.+..+-.... ..|.. +....+.+ .+....+.|...+.+++++++++|.|.-....+
T Consensus 188 ~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l 263 (906)
T PRK14720 188 IEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT--RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREEL 263 (906)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHH
Confidence 444444444445665554333222211 11200 00000000 012233458899999999999999998444433
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.09 E-value=6e-09 Score=116.19 Aligned_cols=164 Identities=10% Similarity=-0.013 Sum_probs=138.6
Q ss_pred hhhcHHHHHHHHHHhhhcchh----------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVDEE----------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTS 181 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~ 181 (498)
..|++..|++.+.+++..+.. .+...|++++|+.++++++.-+|.....+..+|.+|..+|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd-------- 117 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR-------- 117 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC--------
Confidence 457788899999888877632 23567999999999999994445555566666889999999
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864 182 PSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
+++|++.|+++++.+|++..++..++.++.+ .++.++|+ ..+++++..+|.+... ..++.++
T Consensus 118 ------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~----~~q~~eAl-------~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 118 ------WDQALALWQSSLKKDPTNPDLISGMIMTQAD----AGRGGVVL-------KQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred ------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh----cCCHHHHH-------HHHHHhcccCcchHHH-HHHHHHH
Confidence 9999999999999999999999999999999 99999999 6999999999986554 5556666
Q ss_pred HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
...++. .+|+..|+++++++|++..++..+..++...|-.
T Consensus 180 ~~~~~~----------~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 180 RATDRN----------YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HhcchH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 666666 7799999999999999999999999999998853
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=1.9e-08 Score=102.16 Aligned_cols=121 Identities=20% Similarity=0.071 Sum_probs=74.7
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
|....++|..+..++..|+ +++|...++..++..|+|+..+...+.++.. .++.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~--------------~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~----~nk~~~A~---- 360 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQ--------------YDEALKLLQPLIAAQPDNPYYLELAGDILLE----ANKAKEAI---- 360 (484)
T ss_pred ccchHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHH----
Confidence 4555566666666666666 6666666666666666666666666666666 66666666
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+.+++++.++|+....+.++|.+|.+.|++ ++|+..++..+.-+|+++..|..|+.+|..+|+
T Consensus 361 ---e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 361 ---ERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred ---HHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 456666666666666666666666666666 566666666666666666666666666666665
No 98
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.08 E-value=4.9e-09 Score=111.62 Aligned_cols=156 Identities=19% Similarity=0.107 Sum_probs=125.3
Q ss_pred HhCCCCHHHH--HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864 152 ERNPEDYDAL--YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEA 229 (498)
Q Consensus 152 ~~~P~~~~a~--~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA 229 (498)
..-|.+.++| +..|.-|...++ .+.+.+|+.+|++|++++|+++.+|-.++.++.. ...+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~-----------~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~----~~~~~~~ 395 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGD-----------AKSLNKASDLLEEILKSEPDFTYAQAEKALADIV----RHSQQPL 395 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----HHhcCCc
Confidence 3446777765 556666655433 3448899999999999999999999999998876 3222211
Q ss_pred -HHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 230 -EELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLY 306 (498)
Q Consensus 230 -~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~ 306 (498)
...+.++....++++.+ +|.++.++.-+|..+...|++ ++|+..|++|++++|+ ..+|+.+|.++.
T Consensus 396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~ps-~~a~~~lG~~~~ 464 (517)
T PRK10153 396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEMS-WLNYVLLGKVYE 464 (517)
T ss_pred cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCC-HHHHHHHHHHHH
Confidence 12345566777777774 788889999999999999999 9999999999999995 889999999999
Q ss_pred HcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 307 GLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 307 ~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
..|+ +.+|++.|.+|+.++|.++.|..
T Consensus 465 ~~G~-------------------~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 465 LKGD-------------------NRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HcCC-------------------HHHHHHHHHHHHhcCCCCchHHH
Confidence 9999 99999999999999999885443
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.08 E-value=1.2e-08 Score=103.44 Aligned_cols=106 Identities=21% Similarity=0.162 Sum_probs=75.7
Q ss_pred hccHHHHHHHHHHH------------HHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC
Q 010864 137 QRILTFAAKRYANA------------IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 204 (498)
Q Consensus 137 ~g~~~~A~~~~~~a------------l~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 204 (498)
.++|..|+..|+.. +...|+|+..+-..+.++.+.++ .++|++.+++++.++|+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk--------------~~~A~e~~~kal~l~P~ 372 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANK--------------AKEAIERLKKALALDPN 372 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHhcCCC
Confidence 35666677766653 23557777777777777777777 77777777777777777
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
..-.++++|.+|.+ .|++++|+ ..+++.+..+|+++..|..|+.+|..+|+.
T Consensus 373 ~~~l~~~~a~all~----~g~~~eai-------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 373 SPLLQLNLAQALLK----GGKPQEAI-------RILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred ccHHHHHHHHHHHh----cCChHHHH-------HHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 77777777777777 77777666 577777777777777777777777777776
No 100
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.07 E-value=2.4e-09 Score=84.95 Aligned_cols=99 Identities=33% Similarity=0.474 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKN 239 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~ 239 (498)
+++++|.++...|+ +++|+..|+++++..|++..+++.+|.++.. .|++++|+ ..
T Consensus 2 ~~~~~a~~~~~~~~--------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~-------~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGD--------------YDEALEYYEKALELDPDNADAYYNLAAAYYK----LGKYEEAL-------ED 56 (100)
T ss_pred HHHHHHHHHHHHhc--------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----HHHHHHHH-------HH
Confidence 58899999999999 9999999999999999999999999999999 88888888 68
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 240 YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 240 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
|++++...|.+..++..+|.++...|++ ++|...++++++..|+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 57 YEKALELDPDNAKAYYNLGLAYYKLGKY----------EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHHHhH----------HHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999 9999999999988774
No 101
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.06 E-value=6e-09 Score=95.30 Aligned_cols=116 Identities=22% Similarity=0.299 Sum_probs=97.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~ 210 (498)
+...|++++|+.+|++++.+.|+. ..+++++|.++..+|+ +++|+..|++++.++|++..++.
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------------HDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCcccHHHHH
Confidence 466899999999999999987764 5789999999999999 99999999999999999999999
Q ss_pred HHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 211 NWAIAISDR---AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 211 ~lg~~~~~~---~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
++|.++..+ ....++++.|+..|++|+.++++++.++|++ +...+..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 999999871 1113457888888899999999999999987 4455555555544
No 102
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.06 E-value=7.4e-10 Score=84.95 Aligned_cols=68 Identities=32% Similarity=0.508 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 010864 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG-RTKEAEELWK 234 (498)
Q Consensus 156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~ 234 (498)
+++.+|+.+|.+++..|+ +++|+..|+++++++|+++.+|+++|.++.. +| ++.+|+
T Consensus 1 e~a~~~~~~g~~~~~~~~--------------~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~----~~~~~~~A~---- 58 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGD--------------YEEAIEYFEKAIELDPNNAEAYYNLGLAYMK----LGKDYEEAI---- 58 (69)
T ss_dssp TSHHHHHHHHHHHHHTTH--------------HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH----TTTHHHHHH----
T ss_pred CHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCccHHHHH----
Confidence 368899999999999999 9999999999999999999999999999999 99 688888
Q ss_pred HHHHHHHHHHhcCC
Q 010864 235 QATKNYEKAVQLNW 248 (498)
Q Consensus 235 ~Al~~~~~Al~l~P 248 (498)
..|+++++++|
T Consensus 59 ---~~~~~al~l~P 69 (69)
T PF13414_consen 59 ---EDFEKALKLDP 69 (69)
T ss_dssp ---HHHHHHHHHST
T ss_pred ---HHHHHHHHcCc
Confidence 68899998887
No 103
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=2.4e-09 Score=112.67 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=150.7
Q ss_pred hcHHHHHHHHHHhhhcc--hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------CcCCCC----
Q 010864 114 EQNNAAMELINSVTGVD--EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESA---------DNVSLD---- 178 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g---------~~~~~~---- 178 (498)
|-...|..++++....+ -.+|...|+..+|.....+-++ .|.++..|..+|.+..... +.....
T Consensus 412 GitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~ 490 (777)
T KOG1128|consen 412 GITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRS 490 (777)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHh
Confidence 34456777777766555 3457778888899888888888 7778888888887763221 100000
Q ss_pred -CCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864 179 -STSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (498)
Q Consensus 179 -~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l 257 (498)
+......++|+++.++++..++++|-....||++|.+..+ .++++.|. ++|.+++.++|++..+|+|+
T Consensus 491 ~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq----lek~q~av-------~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 491 LALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ----LEKEQAAV-------KAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred hccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH----HhhhHHHH-------HHHHHHhhcCCCchhhhhhh
Confidence 0012235679999999999999999999999999999888 88888877 68889999999999999999
Q ss_pred HHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHH
Q 010864 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYI 337 (498)
Q Consensus 258 g~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 337 (498)
..+|.++++- .+|...+++|++.+-++..+|-|.-.+....|. +++|+..|
T Consensus 560 s~ayi~~~~k----------~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-------------------~eda~~A~ 610 (777)
T KOG1128|consen 560 STAYIRLKKK----------KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-------------------FEDAIKAY 610 (777)
T ss_pred hHHHHHHhhh----------HHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-------------------HHHHHHHH
Confidence 9999999988 889999999999888888888888888888888 89999999
Q ss_pred HHHHhcCCCHH
Q 010864 338 AAAHALKPSYS 348 (498)
Q Consensus 338 ~~Al~l~p~~~ 348 (498)
.+.+.+..+..
T Consensus 611 ~rll~~~~~~~ 621 (777)
T KOG1128|consen 611 HRLLDLRKKYK 621 (777)
T ss_pred HHHHHhhhhcc
Confidence 99888755443
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.06 E-value=7.1e-09 Score=112.00 Aligned_cols=164 Identities=16% Similarity=0.068 Sum_probs=143.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
.++...|...|-+++.+++..+.+|.-+|.+|...-+ ...|.++|++|.++++.++.++-..+..|
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D--------------m~RA~kCf~KAFeLDatdaeaaaa~adty 536 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD--------------MKRAKKCFDKAFELDATDAEAAAASADTY 536 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcCCchhhhhHHHHHHHh
Confidence 4558889999999999999999999999999999888 99999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHH-----------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 217 SDRAKMRGRTKEAEELW-----------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~~-----------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
.. ..++++|.... -+|+..|+.|++.+|++..+|..+|.+|...|+|
T Consensus 537 ae----~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry 612 (1238)
T KOG1127|consen 537 AE----ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY 612 (1238)
T ss_pred hc----cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence 99 88888887542 3488899999999999999999999999999999
Q ss_pred chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCH
Q 010864 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSY 347 (498)
Q Consensus 268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 347 (498)
..|++.|.+|..++|.+--+.|-.+.....+|+ |..+...+...+.-....
T Consensus 613 ----------~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-------------------Ykeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 613 ----------SHALKVFTKASLLRPLSKYGRFKEAVMECDNGK-------------------YKEALDALGLIIYAFSLE 663 (1238)
T ss_pred ----------ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhh-------------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 666666655555444333
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.06 E-value=9.9e-09 Score=110.32 Aligned_cols=133 Identities=21% Similarity=0.156 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~ 238 (498)
..+...|+.++..|+ +++|+..+.++++.+|.+..+|+.||.+|.. +|+..++. .
T Consensus 140 ~~ll~eAN~lfarg~--------------~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq----rGd~eK~l-------~ 194 (895)
T KOG2076|consen 140 RQLLGEANNLFARGD--------------LEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ----RGDIEKAL-------N 194 (895)
T ss_pred HHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHhCccchhhHHHHHHHHHH----cccHHHHH-------H
Confidence 456677888889999 9999999999999999999999999999999 99999998 5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCC
Q 010864 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGT 318 (498)
Q Consensus 239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~ 318 (498)
..-.|-.++|++...|..++....++|.+ .+|+-+|.+||+.+|.+....++...+|.++|+
T Consensus 195 ~~llAAHL~p~d~e~W~~ladls~~~~~i----------~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~-------- 256 (895)
T KOG2076|consen 195 FWLLAAHLNPKDYELWKRLADLSEQLGNI----------NQARYCYSRAIQANPSNWELIYERSSLYQKTGD-------- 256 (895)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh--------
Confidence 77778899999999999999999999999 999999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 319 VNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 319 ~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
+..|+..|.+++.+.|
T Consensus 257 -----------~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 257 -----------LKRAMETFLQLLQLDP 272 (895)
T ss_pred -----------HHHHHHHHHHHHhhCC
Confidence 8999999999999999
No 106
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=5.9e-09 Score=100.51 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
...++-+.-++.-|..||++.+-|..||.+|+. +|++..|. ..|++|+++.|++++.+..+|.++....
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~----~~~~~~A~-------~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMA----LGRASDAL-------LAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 347888889999999999999999999999999 99999999 7999999999999999999999988776
Q ss_pred CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
.- ..-.++...|+++++++|++..+.+.||..++..|+ |.+|+..++..+++.|
T Consensus 205 ~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~-------------------~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 205 GQ-------QMTAKARALLRQALALDPANIRALSLLAFAAFEQGD-------------------YAEAAAAWQMLLDLLP 258 (287)
T ss_pred CC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHHhcCC
Confidence 43 233789999999999999999999999999999999 9999999999999998
Q ss_pred CHHHH
Q 010864 346 SYSVY 350 (498)
Q Consensus 346 ~~~~~ 350 (498)
.+.-.
T Consensus 259 ~~~~r 263 (287)
T COG4235 259 ADDPR 263 (287)
T ss_pred CCCch
Confidence 87733
No 107
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.04 E-value=8.2e-10 Score=84.69 Aligned_cols=68 Identities=32% Similarity=0.447 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-CcchHHhhhhhHHHHHH
Q 010864 204 TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS-AIVPAREKQTIVRTAIS 282 (498)
Q Consensus 204 ~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g-~~~~a~~~~~~~~~Ai~ 282 (498)
+++..|+++|.++.. .|++++|+ .+|.++++++|+++.+++++|.++..+| ++ ++|+.
T Consensus 1 e~a~~~~~~g~~~~~----~~~~~~A~-------~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQ----QGDYEEAI-------EYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHH----TTHHHHHH-------HHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHH
T ss_pred CHHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHH
Confidence 367899999999999 99999999 7999999999999999999999999999 79 99999
Q ss_pred HHHHHHHhcC
Q 010864 283 KFRAAIQLQF 292 (498)
Q Consensus 283 ~~~~Al~l~P 292 (498)
.|+++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999998
No 108
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.04 E-value=4.9e-09 Score=88.78 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~ 282 (498)
.+.++.+|..+.. .|++++|+ ..|++++..+|++ ..+++.+|.++...|++ ++|+.
T Consensus 2 ~~~~~~~~~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLK----AGDYADAI-------QAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAK 60 (119)
T ss_pred cHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHH
Confidence 4678999999999 99999999 6888888888876 67999999999999999 99999
Q ss_pred HHHHHHHhcCCC---HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 283 KFRAAIQLQFDF---HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSAL 354 (498)
Q Consensus 283 ~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l 354 (498)
.|++++...|++ +.+++++|.++..+|+ +.+|..+|.+++...|++.....++
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-------------------~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 61 AFLAVVKKYPKSPKAPDALLKLGMSLQELGD-------------------KEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHHHCCCCCcccHHHHHHHHHHHHhCC-------------------hHHHHHHHHHHHHHCcCChhHHHHH
Confidence 999999998885 6789999999999998 8999999999999999988665553
No 109
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.04 E-value=1.2e-08 Score=106.31 Aligned_cols=151 Identities=16% Similarity=0.097 Sum_probs=139.9
Q ss_pred HHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 010864 121 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 200 (498)
.+|.+++.. +..++|...+...++.|...|++.+.+...|..+..+|+ -++|......+++
T Consensus 9 ~lF~~~lk~-----yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~--------------~~ea~~~vr~glr 69 (700)
T KOG1156|consen 9 ALFRRALKC-----YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGK--------------KEEAYELVRLGLR 69 (700)
T ss_pred HHHHHHHHH-----HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccc--------------hHHHHHHHHHHhc
Confidence 345555444 557899999999999999999999999999999999999 9999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (498)
Q Consensus 201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A 280 (498)
.++....+|.-+|.++.. ..+|++|+ ++|+.|+.++|+|.+.|..++.+..+++++ +-.
T Consensus 70 ~d~~S~vCwHv~gl~~R~----dK~Y~eai-------Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~----------~~~ 128 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRS----DKKYDEAI-------KCYRNALKIEKDNLQILRDLSLLQIQMRDY----------EGY 128 (700)
T ss_pred cCcccchhHHHHHHHHhh----hhhHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHHHhh----------hhH
Confidence 999999999999999999 88888888 799999999999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
...-.+-+++.|.....|...+.++.-.|+.
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999874
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=4e-09 Score=116.67 Aligned_cols=130 Identities=14% Similarity=0.103 Sum_probs=116.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010864 151 IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (498)
Q Consensus 151 l~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~ 230 (498)
...+|.+.++|..|...|...++ +++|+..++.+++.+|+...+|+.+|.++.. .+++.++.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~--------------~deai~i~~~~l~~~P~~i~~yy~~G~l~~q----~~~~~~~~ 85 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENL--------------TDEAKDICEEHLKEHKKSISALYISGILSLS----RRPLNDSN 85 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCcceehHHHHHHHHHh----hcchhhhh
Confidence 35679999999999999999999 9999999999999999999999999999998 88887776
Q ss_pred HH-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 231 EL-----------WKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 231 ~~-----------~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
-. | .++.+|...+...+.+-.+++.||.||.++|+. ++|...|+++++++|+++.+++
T Consensus 86 lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~----------~ka~~~yer~L~~D~~n~~aLN 154 (906)
T PRK14720 86 LLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNEN----------KKLKGVWERLVKADRDNPEIVK 154 (906)
T ss_pred hhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCcccHHHHH
Confidence 32 2 455666666666778889999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcch
Q 010864 300 NLGTVLYGLAE 310 (498)
Q Consensus 300 ~Lg~~~~~~g~ 310 (498)
|+|..|... +
T Consensus 155 n~AY~~ae~-d 164 (906)
T PRK14720 155 KLATSYEEE-D 164 (906)
T ss_pred HHHHHHHHh-h
Confidence 999999988 5
No 111
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=1.3e-08 Score=107.86 Aligned_cols=130 Identities=22% Similarity=0.149 Sum_probs=120.5
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+.+.+..++|..++.++-.++|..+..|+..|.++...|. +.+|.+.|..|+.++|++..+...+|
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~--------------~~EA~~af~~Al~ldP~hv~s~~Ala 725 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ--------------LEEAKEAFLVALALDPDHVPSMTALA 725 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh--------------hHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 5667888999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.++.. .|+..-|.. ......++++||.++++|+++|.++..+|+. ++|.++|..|+++.+.
T Consensus 726 ~~lle----~G~~~la~~-----~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~----------~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 726 ELLLE----LGSPRLAEK-----RSLLSDALRLDPLNHEAWYYLGEVFKKLGDS----------KQAAECFQAALQLEES 786 (799)
T ss_pred HHHHH----hCCcchHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHccch----------HHHHHHHHHHHhhccC
Confidence 99999 998777771 1288999999999999999999999999999 9999999999999887
Q ss_pred CHH
Q 010864 294 FHR 296 (498)
Q Consensus 294 ~~~ 296 (498)
+|.
T Consensus 787 ~PV 789 (799)
T KOG4162|consen 787 NPV 789 (799)
T ss_pred CCc
Confidence 653
No 112
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.7e-08 Score=97.32 Aligned_cols=165 Identities=17% Similarity=0.198 Sum_probs=126.6
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-----HHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-----HDAFY 210 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-----~~a~~ 210 (498)
-.++-++|++.|...++.+|...+++..||++|...|. .++||..-+..+ ..|+. ..+.+
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE--------------vDRAIRiHQ~L~-~spdlT~~qr~lAl~ 111 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE--------------VDRAIRIHQTLL-ESPDLTFEQRLLALQ 111 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch--------------HHHHHHHHHHHh-cCCCCchHHHHHHHH
Confidence 35677889999999999999999999999999999998 888887665444 45553 34667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH---------------------------HHHHHHHHHHHhcCCCC-----HHHHHHHH
Q 010864 211 NWAIAISDRAKMRGRTKEAEELW---------------------------KQATKNYEKAVQLNWNS-----PQALNNWG 258 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~---------------------------~~Al~~~~~Al~l~P~~-----~~a~~~lg 258 (498)
.||.-|+. .|-++.|++.| ++|+..-++...+.++. ++.+.-|+
T Consensus 112 qL~~Dym~----aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 112 QLGRDYMA----AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHH----hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 77777777 77777777543 34555555555555542 22333333
Q ss_pred HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (498)
Q Consensus 259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 338 (498)
..+.. ..+++.|+..+.+|++.+|+..++-..+|.++...|+ |.+|++.++
T Consensus 188 q~~~~----------~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-------------------y~~AV~~~e 238 (389)
T COG2956 188 QQALA----------SSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-------------------YQKAVEALE 238 (389)
T ss_pred HHHhh----------hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-------------------hHHHHHHHH
Confidence 33333 4455999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCHH
Q 010864 339 AAHALKPSYS 348 (498)
Q Consensus 339 ~Al~l~p~~~ 348 (498)
.+++-+|+..
T Consensus 239 ~v~eQn~~yl 248 (389)
T COG2956 239 RVLEQNPEYL 248 (389)
T ss_pred HHHHhChHHH
Confidence 9999999876
No 113
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-08 Score=101.66 Aligned_cols=117 Identities=24% Similarity=0.197 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHHHHHc
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---------------LHDAFYNWAIAISDRAKMR 223 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---------------~~~a~~~lg~~~~~~~~~~ 223 (498)
......|+.|++.|+ |..|+..|++|+..-.. -..+|.||+.++.+ +
T Consensus 209 ~~~ke~Gn~~fK~gk--------------~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----l 270 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGK--------------FKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----L 270 (397)
T ss_pred HHHHHhhhHHHhhch--------------HHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----h
Confidence 445678999999999 99999999999987321 13678999999999 9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (498)
Q Consensus 224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~ 303 (498)
++|.+|+ ..+.++|+++|+|..+++..|.+|..+|+| +.|+..|+++++++|+|..+...|..
T Consensus 271 ~~~~~Ai-------~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 271 KEYKEAI-------ESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIK 333 (397)
T ss_pred hhHHHHH-------HHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999988 799999999999999999999999999999 99999999999999999999998888
Q ss_pred HHHHcch
Q 010864 304 VLYGLAE 310 (498)
Q Consensus 304 ~~~~~g~ 310 (498)
+-.+..+
T Consensus 334 l~~k~~~ 340 (397)
T KOG0543|consen 334 LKQKIRE 340 (397)
T ss_pred HHHHHHH
Confidence 7666554
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.99 E-value=9.4e-09 Score=81.40 Aligned_cols=99 Identities=29% Similarity=0.396 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (498)
Q Consensus 208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A 287 (498)
+++++|.++.. .|++++|+ ..++++++..|.+..+++.+|.++...|++ ++|+.+|+++
T Consensus 2 ~~~~~a~~~~~----~~~~~~A~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYK----LGDYDEAL-------EYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHH----HhcHHHHH-------HHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 57899999999 99999999 689999999999999999999999999999 9999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 288 IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 288 l~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
+.+.|.+..+++.+|.++...|+ +..|..++.+++.+.|+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 61 LELDPDNAKAYYNLGLAYYKLGK-------------------YEEALEAYEKALELDPN 100 (100)
T ss_pred HhCCCcchhHHHHHHHHHHHHHh-------------------HHHHHHHHHHHHccCCC
Confidence 99999999999999999999998 88999999999888774
No 115
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.97 E-value=6.8e-08 Score=100.59 Aligned_cols=186 Identities=11% Similarity=0.033 Sum_probs=153.5
Q ss_pred hhcHHHHHHHHHHhhhcchh---------hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864 113 AEQNNAAMELINSVTGVDEE---------GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPS 183 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~ 183 (498)
..+++.|..+|.++-...+. -..-+++.++|+.+++++|+..|+++..|..+|.++-++++
T Consensus 631 n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~---------- 700 (913)
T KOG0495|consen 631 NDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMEN---------- 700 (913)
T ss_pred cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHH----------
Confidence 35677777777776655421 12336899999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864 184 KDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~ 263 (498)
.+.|.+.|...++..|+....|..|+.+-.. .|..-.|. ..++++.-.||++...|.-.-..-.+
T Consensus 701 ----ie~aR~aY~~G~k~cP~~ipLWllLakleEk----~~~~~rAR-------~ildrarlkNPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 701 ----IEMAREAYLQGTKKCPNSIPLWLLLAKLEEK----DGQLVRAR-------SILDRARLKNPKNALLWLESIRMELR 765 (913)
T ss_pred ----HHHHHHHHHhccccCCCCchHHHHHHHHHHH----hcchhhHH-------HHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 9999999999999999999999999999888 88888888 79999999999999999999888899
Q ss_pred hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH------------------------------HHHHHHHHHcchhHH
Q 010864 264 LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI------------------------------YNLGTVLYGLAEDTL 313 (498)
Q Consensus 264 ~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~------------------------------~~Lg~~~~~~g~~~~ 313 (498)
.|.. ++|.....+||+--|++...| ...|..++...+
T Consensus 766 ~gn~----------~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k--- 832 (913)
T KOG0495|consen 766 AGNK----------EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKK--- 832 (913)
T ss_pred cCCH----------HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHH---
Confidence 9998 888888888887666654444 344444444443
Q ss_pred hccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 314 RTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
++.|...|.++++.+|++....-
T Consensus 833 ----------------~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 833 ----------------IEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred ----------------HHHHHHHHHHHHccCCccchHHH
Confidence 89999999999999999984443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=8.1e-09 Score=108.78 Aligned_cols=165 Identities=15% Similarity=0.030 Sum_probs=134.3
Q ss_pred hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~ 211 (498)
+.+.+.|-...|+..|++ .+.|-....+|...|+ ..+|.....+-++ +|+++..|..
T Consensus 406 ell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~--------------~~kaeei~~q~le-k~~d~~lyc~ 462 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQ--------------HGKAEEINRQELE-KDPDPRLYCL 462 (777)
T ss_pred HHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcc--------------cchHHHHHHHHhc-CCCcchhHHH
Confidence 345667888889999887 5778888999999998 8888888888888 7888888888
Q ss_pred HHHHHHHH-----HHHcCCHHHHH------------HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864 212 WAIAISDR-----AKMRGRTKEAE------------ELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQ 274 (498)
Q Consensus 212 lg~~~~~~-----~~~~g~~~eA~------------~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~ 274 (498)
||.+..+. +...+++..|. ..|+++.++++..++++|-....|+++|.+..+++++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~------- 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE------- 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh-------
Confidence 88886552 11122222221 3356677999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+.|..+|.+++.++|++..+|+|++.+|..+++ -.+|..++..|++.+-++.
T Consensus 536 ---q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-------------------k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 536 ---QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-------------------KKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred ---HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-------------------hHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999998 5677777777777774443
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.97 E-value=4.2e-08 Score=102.24 Aligned_cols=188 Identities=10% Similarity=-0.025 Sum_probs=135.4
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|+-++|..+...++..|+.....|..+|.++....+ |++|+++|+.|+.++|+|...|.-|+
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~--------------Y~eaiKcy~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKK--------------YDEAIKCYRNALKIEKDNLQILRDLS 116 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhh--------------HHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4567999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc--
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ-- 291 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~-- 291 (498)
..-.+ +++++-.. ..-.+.++++|.+...|..++.++...|.+ ..|....+.-....
T Consensus 117 lLQ~Q----mRd~~~~~-------~tr~~LLql~~~~ra~w~~~Avs~~L~g~y----------~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 117 LLQIQ----MRDYEGYL-------ETRNQLLQLRPSQRASWIGFAVAQHLLGEY----------KMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHH----HHhhhhHH-------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhcc
Confidence 99999 88888887 577788899999999999999999999999 55555444444332
Q ss_pred -CCCHHH-----HHHHHHHHHHcchhHH--hccCCCCC-------CCCC------hhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864 292 -FDFHRA-----IYNLGTVLYGLAEDTL--RTGGTVNP-------REVS------PNELYSQSAIYIAAAHALKPSYSVY 350 (498)
Q Consensus 292 -P~~~~a-----~~~Lg~~~~~~g~~~~--~~~~~~~~-------~~~~------~~~~~~~A~~~~~~Al~l~p~~~~~ 350 (498)
|+.... ......++...|.... ........ -... ..+.+++|...|...+..+|++..|
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 221111 1111222222222100 00000000 0000 0113789999999999999999966
Q ss_pred HHHHHH
Q 010864 351 SSALRL 356 (498)
Q Consensus 351 ~~~l~~ 356 (498)
...+..
T Consensus 256 y~~l~~ 261 (700)
T KOG1156|consen 256 YEGLEK 261 (700)
T ss_pred HHHHHH
Confidence 655443
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=2e-08 Score=108.71 Aligned_cols=197 Identities=17% Similarity=0.049 Sum_probs=151.0
Q ss_pred hhcHHHHHHHHHHhhhcchhh-------HHhhccHHHHHHHHHHHHHhC--------------------CCCHHHHHHHH
Q 010864 113 AEQNNAAMELINSVTGVDEEG-------RSRQRILTFAAKRYANAIERN--------------------PEDYDALYNWA 165 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~-------~~~~g~~~~A~~~~~~al~~~--------------------P~~~~a~~~lg 165 (498)
.+....++.+|.+++..+... ......|..|...+.....+. -+-...++..+
T Consensus 381 P~~l~~as~~Ydn~lSaD~sn~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~ 460 (1238)
T KOG1127|consen 381 PSILSWASICYDNALSADASNQRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECEN 460 (1238)
T ss_pred cHHHHHHHHHHHHhhcCChhhhhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHH
Confidence 455666777777777666321 122344555555444444433 33333333333
Q ss_pred HHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010864 166 LVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (498)
Q Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~ 245 (498)
..++..+- ....+...|...|-++++++++.+.+|..||..|.+ .-+...|. ++|++|++
T Consensus 461 ~~~w~a~~---------~~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd----~~Dm~RA~-------kCf~KAFe 520 (1238)
T KOG1127|consen 461 SEFWVALG---------CMRKNSALALHALIRALRLDVSLAPAFAFLGQIYRD----SDDMKRAK-------KCFDKAFE 520 (1238)
T ss_pred HHHHHHHH---------HhhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH----HHHHHHHH-------HHHHHHhc
Confidence 33333222 122348899999999999999999999999999998 55666666 79999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchH--------------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 246 LNWNSPQALNNWGLALQELSAIVPA--------------------------REKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 246 l~P~~~~a~~~lg~~l~~~g~~~~a--------------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
+|+.++.++-..+..|.+...++.| +-+.+++..|+..|+.|++.+|++.+.|.
T Consensus 521 LDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~ 600 (1238)
T KOG1127|consen 521 LDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWL 600 (1238)
T ss_pred CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHH
Confidence 9999999999999999999998877 23478999999999999999999999999
Q ss_pred HHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 300 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 300 ~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
.||.+|...|+ |..|...|.+|..++|.+.
T Consensus 601 gLGeAY~~sGr-------------------y~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 601 GLGEAYPESGR-------------------YSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHHHHHHhcCc-------------------eehHHHhhhhhHhcCcHhH
Confidence 99999999999 8999999999999999987
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.93 E-value=5.5e-08 Score=86.33 Aligned_cols=134 Identities=16% Similarity=0.069 Sum_probs=112.2
Q ss_pred hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHH
Q 010864 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEE 190 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 190 (498)
.+...+-..|..+... ...++...+...+++.+..+|+. ..+.+.+|.+++..|+ +++
T Consensus 6 ~~~~~a~~~y~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------------~~~ 66 (145)
T PF09976_consen 6 QQAEQASALYEQALQA-----LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------------YDE 66 (145)
T ss_pred HHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------------HHH
Confidence 4455666677776655 34788889999999999999998 5778899999999999 999
Q ss_pred HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 191 ACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 191 A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
|+..|++++...|+. ..+.++|+.++.. .|++++|+. .++. +.-.+-.+.++..+|.+|...|++
T Consensus 67 A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----~~~~d~Al~-------~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 67 AKAALEKALANAPDPELKPLARLRLARILLQ----QGQYDEALA-------TLQQ-IPDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----cCCHHHHHH-------HHHh-ccCcchHHHHHHHHHHHHHHCCCH
Confidence 999999999988664 4588999999999 999999994 5543 334455678899999999999999
Q ss_pred chHHhhhhhHHHHHHHHHHHH
Q 010864 268 VPAREKQTIVRTAISKFRAAI 288 (498)
Q Consensus 268 ~~a~~~~~~~~~Ai~~~~~Al 288 (498)
++|+..|++||
T Consensus 135 ----------~~A~~~y~~Al 145 (145)
T PF09976_consen 135 ----------DEARAAYQKAL 145 (145)
T ss_pred ----------HHHHHHHHHhC
Confidence 99999999985
No 120
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.90 E-value=1.7e-08 Score=100.02 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=139.7
Q ss_pred hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP--ED----YDALYNWALVLQESADNVSLDSTSPSKDAL 187 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~ 187 (498)
.+++.|.++|.++... +...+++++|..+|.++....- ++ +.++...+.+|.+. +
T Consensus 29 ~~~e~Aa~~y~~Aa~~----fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~-------------- 89 (282)
T PF14938_consen 29 PDYEEAADLYEKAANC----FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D-------------- 89 (282)
T ss_dssp HHHHHHHHHHHHHHHH----HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--------------
T ss_pred CCHHHHHHHHHHHHHH----HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--------------
Confidence 5899999999999988 7778999999999999976542 21 34567777777666 7
Q ss_pred HHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Q 010864 188 LEEACKKYDEATRLC-----PT-LHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGL 259 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~-----p~-~~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~ 259 (498)
+++|+.+|++|+.+. +. -+.++.++|.+|.. . |++++|++.|++|+..|+.-- .+ ....++.++|.
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~----~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE----QLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC----TT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHH
Confidence 999999999999982 22 25688999999998 8 999999999999988888532 11 13567889999
Q ss_pred HHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHH
Q 010864 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQ 332 (498)
Q Consensus 260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-------~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 332 (498)
++.++|+| ++|+..|++.....-+ ....+...+.|++..|+ +..
T Consensus 164 l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D-------------------~v~ 214 (282)
T PF14938_consen 164 LYARLGRY----------EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD-------------------YVA 214 (282)
T ss_dssp HHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT--------------------HHH
T ss_pred HHHHhCCH----------HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC-------------------HHH
Confidence 99999999 9999999999875321 12345677888899888 788
Q ss_pred HHHHHHHHHhcCCCHH
Q 010864 333 SAIYIAAAHALKPSYS 348 (498)
Q Consensus 333 A~~~~~~Al~l~p~~~ 348 (498)
|...+++....+|...
T Consensus 215 A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 215 ARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHGTTSTTST
T ss_pred HHHHHHHHHhhCCCCC
Confidence 8999999999988654
No 121
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.7e-08 Score=98.24 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=110.2
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPE----D-----------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY 195 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~----~-----------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~ 195 (498)
+..+++.|+|..|+..|++++..-.. + ..++.|++.+|..+++ |.+|+..+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~--------------~~~Ai~~c 280 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE--------------YKEAIESC 280 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh--------------HHHHHHHH
Confidence 44578999999999999999875331 1 2468999999999999 99999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864 196 DEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQT 275 (498)
Q Consensus 196 ~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~ 275 (498)
.++|+++|+|..++|..|.++.. +|+|+.|+ ..|+++++++|+|..+...|..+..+..++
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~-------~df~ka~k~~P~Nka~~~el~~l~~k~~~~-------- 341 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLA----LGEYDLAR-------DDFQKALKLEPSNKAARAELIKLKQKIREY-------- 341 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHh----hccHHHHH-------HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH--------
Confidence 99999999999999999999999 99999999 799999999999999999999998888776
Q ss_pred hHHHHHHHHHHHHHhc
Q 010864 276 IVRTAISKFRAAIQLQ 291 (498)
Q Consensus 276 ~~~~Ai~~~~~Al~l~ 291 (498)
.+...+.|.+.+..-
T Consensus 342 -~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 342 -EEKEKKMYANMFAKL 356 (397)
T ss_pred -HHHHHHHHHHHhhcc
Confidence 244467777777653
No 122
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.86 E-value=3.2e-08 Score=98.04 Aligned_cols=208 Identities=17% Similarity=0.162 Sum_probs=129.5
Q ss_pred ccCCCChhhhhhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCC------CCHHH
Q 010864 103 FSQGNTPHQLAEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNP------EDYDA 160 (498)
Q Consensus 103 ~~~~~~~~q~~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P------~~~~a 160 (498)
|++......+.+++++|+++...-+.+. +..+-.+|.|++|+.++.+-|.+.- ....+
T Consensus 58 YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RA 137 (639)
T KOG1130|consen 58 YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRA 137 (639)
T ss_pred HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHH
Confidence 5555555556677888877664333222 2234557999999999988776532 23679
Q ss_pred HHHHHHHHHHhcCcCCCCCC------CCchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHH
Q 010864 161 LYNWALVLQESADNVSLDST------SPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKE 228 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~------~~~~~~~~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~~e 228 (498)
+||+|.+|...|+...+... ..+-...++.|.++|..-|++... ...++-|||..|.- +|+|+.
T Consensus 138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl----LGdf~~ 213 (639)
T KOG1130|consen 138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL----LGDFDQ 213 (639)
T ss_pred HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee----eccHHH
Confidence 99999999999986443322 111223455555555555554222 12344444444444 555555
Q ss_pred HHHHHH---------------------------------HHHHHHHHHH----hcCC--CCHHHHHHHHHHHHHhcCcch
Q 010864 229 AEELWK---------------------------------QATKNYEKAV----QLNW--NSPQALNNWGLALQELSAIVP 269 (498)
Q Consensus 229 A~~~~~---------------------------------~Al~~~~~Al----~l~P--~~~~a~~~lg~~l~~~g~~~~ 269 (498)
|+...+ .|+++|++++ ++.- ..++..+.||..|.-+..+
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~-- 291 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV-- 291 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH--
Confidence 443321 1334444433 2222 2456678888888888887
Q ss_pred HHhhhhhHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864 270 AREKQTIVRTAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (498)
Q Consensus 270 a~~~~~~~~~Ai~~~~~Al~l~------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 343 (498)
++||.++.+-+.+. -....+++.||.++..+|. ..+|..+.++.+.+
T Consensus 292 --------~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~-------------------h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 292 --------QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE-------------------HRKALYFAELHLRS 344 (639)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh-------------------HHHHHHHHHHHHHH
Confidence 99999999988874 3456789999999999998 66777666666554
No 123
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.86 E-value=5.1e-07 Score=87.23 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=118.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDAL---YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDA 208 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~---~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a 208 (498)
...|+|++|+..|++++...|..+.+. +++|.+|+..++ +++|+..|++.++++|++ ..+
T Consensus 43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~--------------y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD--------------LPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCcCCCchHHH
Confidence 557999999999999999999987654 999999999999 999999999999998875 468
Q ss_pred HHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchH----
Q 010864 209 FYNWAIAISDRAKMRGR-----------TKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPA---- 270 (498)
Q Consensus 209 ~~~lg~~~~~~~~~~g~-----------~~eA~~~~~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~a---- 270 (498)
++.+|.++.. .++ .+.-...-++|+..|++.++..|++. .+...+..+..++.+.+-.
T Consensus 109 ~Y~~g~~~~~----~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 109 LYMRGLTNMA----LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHHhhhh----cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988755 331 11111223456689999999999864 3333333332222222111
Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010864 271 REKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 271 ~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~ 310 (498)
+.+.|.+..|+.-|+.+++--|+. .++++.++.+|..+|.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 445555599999999999987765 6789999999999997
No 124
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.85 E-value=1.1e-08 Score=77.37 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
+.+|..+.. .|++++|+ ..|+++++.+|+++.+++.+|.++..+|++ ++|+..|+++++
T Consensus 1 ~~~a~~~~~----~g~~~~A~-------~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQ----QGDYDEAI-------AAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHH----CTHHHHHH-------HHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred ChHHHHHHH----cCCHHHHH-------HHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHH
Confidence 467888888 99999999 799999999999999999999999999999 999999999999
Q ss_pred hcCCCH
Q 010864 290 LQFDFH 295 (498)
Q Consensus 290 l~P~~~ 295 (498)
++|+++
T Consensus 60 ~~P~~p 65 (65)
T PF13432_consen 60 LDPDNP 65 (65)
T ss_dssp HSTT-H
T ss_pred HCcCCC
Confidence 999975
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.83 E-value=1e-08 Score=82.02 Aligned_cols=80 Identities=26% Similarity=0.302 Sum_probs=71.1
Q ss_pred hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
+|+++.|+..|+++++.+|. +...++.+|.+|+.+|+ |++|+..+++ +..++.+...++.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~--------------y~~A~~~~~~-~~~~~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK--------------YEEAIELLQK-LKLDPSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH--------------HHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC--------------HHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence 68999999999999999995 56778889999999999 9999999999 8899999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 010864 215 AISDRAKMRGRTKEAEELWKQ 235 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~ 235 (498)
++.. +|++++|++.+++
T Consensus 67 ~~~~----l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 67 CLLK----LGKYEEAIKALEK 83 (84)
T ss_dssp HHHH----TT-HHHHHHHHHH
T ss_pred HHHH----hCCHHHHHHHHhc
Confidence 9999 9999999964443
No 126
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.81 E-value=8.4e-09 Score=99.94 Aligned_cols=104 Identities=19% Similarity=0.127 Sum_probs=94.9
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~ 210 (498)
+..++++|.|++||.||.+++..+|.++..+.|++.+|+.+.+ |..|...+..|+.++..+..+|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~--------------FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKS--------------FAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHH--------------HHHHHHhHHHHHHhhHHHHHHHH
Confidence 4448999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGL 259 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~ 259 (498)
..|.+-.. +|...+|. +.|+.+|++.|++.+..-.++.
T Consensus 170 RR~~AR~~----Lg~~~EAK-------kD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 170 RRMQARES----LGNNMEAK-------KDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHHH----HhhHHHHH-------HhHHHHHhhCcccHHHHHHHHH
Confidence 99999999 99999999 6999999999997665544443
No 127
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=9.1e-07 Score=93.94 Aligned_cols=71 Identities=13% Similarity=0.052 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 331 (498)
-+++.++..|...|++ ++|+.+.++||+..|..++.++..|.+|...|+ +.
T Consensus 195 w~~~~lAqhyd~~g~~----------~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-------------------~~ 245 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDY----------EKALEYIDKAIEHTPTLVELYMTKARILKHAGD-------------------LK 245 (517)
T ss_pred HHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-------------------HH
Confidence 4568889999999999 999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHhcCCCHHHHH
Q 010864 332 QSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 332 ~A~~~~~~Al~l~p~~~~~~ 351 (498)
+|..+++.|-.+|+.+....
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYIN 265 (517)
T ss_pred HHHHHHHHHHhCChhhHHHH
Confidence 99999999999999987433
No 128
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.81 E-value=1.6e-08 Score=76.48 Aligned_cols=65 Identities=29% Similarity=0.472 Sum_probs=59.8
Q ss_pred HHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 010864 162 YNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYE 241 (498)
Q Consensus 162 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~ 241 (498)
+.+|..++..|+ +++|+..|+++++.+|++..+++.+|.++.. +|++++|+ ..|+
T Consensus 1 ~~~a~~~~~~g~--------------~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~-------~~~~ 55 (65)
T PF13432_consen 1 YALARALYQQGD--------------YDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEAL-------AYYE 55 (65)
T ss_dssp HHHHHHHHHCTH--------------HHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHH-------HHHH
T ss_pred ChHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHH
Confidence 468999999999 9999999999999999999999999999999 99999999 6999
Q ss_pred HHHhcCCCCH
Q 010864 242 KAVQLNWNSP 251 (498)
Q Consensus 242 ~Al~l~P~~~ 251 (498)
++++.+|+++
T Consensus 56 ~a~~~~P~~p 65 (65)
T PF13432_consen 56 RALELDPDNP 65 (65)
T ss_dssp HHHHHSTT-H
T ss_pred HHHHHCcCCC
Confidence 9999999875
No 129
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.76 E-value=4.6e-07 Score=85.17 Aligned_cols=163 Identities=21% Similarity=0.181 Sum_probs=114.0
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---H
Q 010864 134 RSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---D 207 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~ 207 (498)
....|++.+|+..|++.+...|.. ..+++.+|.+++..|+ +.+|+..|++.++..|++. .
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------------y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------------YEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCCCCcchhh
Confidence 367899999999999999998865 6789999999999999 9999999999999999854 6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcCcchH----HhhhhhHHHH
Q 010864 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ---ALNNWGLALQELSAIVPA----REKQTIVRTA 280 (498)
Q Consensus 208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~---a~~~lg~~l~~~g~~~~a----~~~~~~~~~A 280 (498)
+++.+|.++..+....-..+.-....++|+..|+..+...|++.. +...+..+...+.+.+-. +.+.|.+..|
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 899999998772111000022234456677899999999998642 322222222222211110 4555556999
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHHcch
Q 010864 281 ISKFRAAIQLQFDFH---RAIYNLGTVLYGLAE 310 (498)
Q Consensus 281 i~~~~~Al~l~P~~~---~a~~~Lg~~~~~~g~ 310 (498)
+..|+.+++.-|+.. .++..++.+|..+|.
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence 999999999999874 678889999999997
No 130
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.76 E-value=1.6e-06 Score=90.63 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=122.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
.|..+.-..++++++...|.....|...+..++..|+ ...|...+.+|++.+|++-+.|+.--.+.
T Consensus 563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agd--------------v~~ar~il~~af~~~pnseeiwlaavKle 628 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGD--------------VPAARVILDQAFEANPNSEEIWLAAVKLE 628 (913)
T ss_pred cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCC--------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHh
Confidence 3667777788888888888888888888999988888 99999999999999999888887766666
Q ss_pred HHHHHHcCCHHHHHHHH--------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864 217 SDRAKMRGRTKEAEELW--------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~~--------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a 270 (498)
+. ..+++.|..+| ++|+..++++++..|++...|..+|.++.++++.
T Consensus 629 ~e----n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i--- 701 (913)
T KOG0495|consen 629 FE----NDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI--- 701 (913)
T ss_pred hc----cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH---
Confidence 66 66777766544 3466677777777777777777777777777777
Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+.|...|...++.-|+....|..|+.+-...|. ...|...+.++.--+|++.
T Consensus 702 -------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~-------------------~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 702 -------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ-------------------LVRARSILDRARLKNPKNA 753 (913)
T ss_pred -------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcc-------------------hhhHHHHHHHHHhcCCCcc
Confidence 666666666666666666666666666655554 4556666666666666666
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.75 E-value=3.3e-07 Score=89.28 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHH-HHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 010864 157 DYDALYNWALVL-QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEEL 232 (498)
Q Consensus 157 ~~~a~~~lg~~~-~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~ 232 (498)
+...+|..|..+ +..|+ |++|+..|++.++..|++ ..+++.+|.+|.. .|++++|+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~--------------y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~-- 200 (263)
T PRK10803 141 DANTDYNAAIALVQDKSR--------------QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAA-- 200 (263)
T ss_pred CHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHH--
Confidence 357788888876 55688 999999999999999997 5799999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864 233 WKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (498)
Q Consensus 233 ~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a 297 (498)
..|++++...|+ .+++++.+|.++..+|++ ++|+..|+++++..|+...+
T Consensus 201 -----~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~----------~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 201 -----YYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT----------AKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred -----HHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHH
Confidence 688888877776 689999999999999999 99999999999999997754
No 132
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.73 E-value=1.8e-08 Score=99.75 Aligned_cols=164 Identities=17% Similarity=0.149 Sum_probs=116.1
Q ss_pred cHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhH
Q 010864 115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERN------PEDYDALYNWALVLQESADNVSLDSTSPSKDALL 188 (498)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 188 (498)
++..--.+|.++++. ++.+++|++|+++...-|.+. -..+.+--|||+.+..+|. |
T Consensus 50 Dl~tLSAIYsQLGNA----yfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~--------------f 111 (639)
T KOG1130|consen 50 DLSTLSAIYSQLGNA----YFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA--------------F 111 (639)
T ss_pred HHHHHHHHHHHhcch----hhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcc--------------c
Confidence 334444455555544 777888888888755443321 2334556789999999998 9
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHHHHHHhcCCC
Q 010864 189 EEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGR-------------TKEAEELWKQATKNYEKAVQLNWN 249 (498)
Q Consensus 189 ~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~-------------~~eA~~~~~~Al~~~~~Al~l~P~ 249 (498)
++|+.++.+-|.+... ...++||||.+|.. .|+ .+++...++.|+++|..-+++.-.
T Consensus 112 deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYha----kGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 112 DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHA----KGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhh----cccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877332 46799999999998 554 356677888999999988876543
Q ss_pred ------CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcch
Q 010864 250 ------SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF------HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 250 ------~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~------~~a~~~Lg~~~~~~g~ 310 (498)
...++-|||..|+-+|+| +.||.+.+.-+++...+ -.++.|||.++.-+|+
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf----------~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDF----------DQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccH----------HHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 345678888888888888 77777777666664443 2466777777766665
No 133
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.73 E-value=2.7e-08 Score=79.49 Aligned_cols=80 Identities=26% Similarity=0.295 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864 186 ALLEEACKKYDEATRLCPT--LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE 263 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~--~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~ 263 (498)
++|++|+..|+++++.+|. +...++++|.+|.. .|++++|+ ..+++ ++.++.+...++.+|.++.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~-------~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAI-------ELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHH-------HHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHH-------HHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 4499999999999999995 56678889999999 99999999 57777 88888899999999999999
Q ss_pred hcCcchHHhhhhhHHHHHHHHHHH
Q 010864 264 LSAIVPAREKQTIVRTAISKFRAA 287 (498)
Q Consensus 264 ~g~~~~a~~~~~~~~~Ai~~~~~A 287 (498)
+|++ ++|+.+|+++
T Consensus 71 l~~y----------~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKY----------EEAIKALEKA 84 (84)
T ss_dssp TT-H----------HHHHHHHHHH
T ss_pred hCCH----------HHHHHHHhcC
Confidence 9999 9999999875
No 134
>PRK15331 chaperone protein SicA; Provisional
Probab=98.71 E-value=1.9e-07 Score=82.83 Aligned_cols=112 Identities=15% Similarity=0.010 Sum_probs=100.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHH
Q 010864 149 NAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKE 228 (498)
Q Consensus 149 ~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~e 228 (498)
.+..+.++.-+..+..|.-++..|+ +++|...|+-...++|.+.+.++.||.++.. +++|++
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk--------------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~----~k~y~~ 89 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGR--------------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQL----KKQFQK 89 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----HHHHHH
Confidence 3444566677889999999999999 9999999999999999999999999999998 888888
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (498)
Q Consensus 229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~ 296 (498)
|+ ..|-.|..++++++...+..|.+|..+|+. +.|+.+|..++. .|.+..
T Consensus 90 Ai-------~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~----------~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 90 AC-------DLYAVAFTLLKNDYRPVFFTGQCQLLMRKA----------AKARQCFELVNE-RTEDES 139 (165)
T ss_pred HH-------HHHHHHHHcccCCCCccchHHHHHHHhCCH----------HHHHHHHHHHHh-CcchHH
Confidence 88 799999999999999999999999999999 999999999998 465443
No 135
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=6e-07 Score=87.47 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864 205 LHDAFYNWAIAI-SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTA 280 (498)
Q Consensus 205 ~~~a~~~lg~~~-~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A 280 (498)
....+|..+..+ .+ .|+|++|+ ..|++.++..|++ +.+++.+|.+|+..|++ ++|
T Consensus 141 ~e~~~Y~~A~~l~~~----~~~y~~Ai-------~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A 199 (263)
T PRK10803 141 DANTDYNAAIALVQD----KSRQDDAI-------VAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDA 199 (263)
T ss_pred CHHHHHHHHHHHHHh----cCCHHHHH-------HHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHH
Confidence 456778888776 56 78999999 6899999999997 58999999999999999 999
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864 281 ISKFRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (498)
Q Consensus 281 i~~~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~ 357 (498)
+..|++++...|+ .+.+++.+|.++..+|+ +..|..+|++.++..|+......+...+
T Consensus 200 ~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~-------------------~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 200 AYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD-------------------TAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999999887 47899999999999998 8999999999999999998776665544
No 136
>PRK15331 chaperone protein SicA; Provisional
Probab=98.68 E-value=2.8e-07 Score=81.79 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=98.0
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHH
Q 010864 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTA 280 (498)
Q Consensus 201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~A 280 (498)
+.++..+..|..|.-+.. .|++++|. ..|+-..-++|.+...|..||.+++.+++| ++|
T Consensus 32 is~~~le~iY~~Ay~~y~----~Gk~~eA~-------~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~A 90 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYN----QGRLDEAE-------TFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QKA 90 (165)
T ss_pred CCHHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HHH
Confidence 455566778888888888 99999999 699988999999999999999999999999 999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 281 ISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 281 i~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+..|..|..++++++...+..|.||..+|+ ...|..+|+.++. .|.+.
T Consensus 91 i~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-------------------~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 91 CDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-------------------AAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHcccCCCCccchHHHHHHHhCC-------------------HHHHHHHHHHHHh-CcchH
Confidence 999999999999999999999999999999 7899999999999 56665
No 137
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=1.2e-07 Score=96.70 Aligned_cols=69 Identities=22% Similarity=0.331 Sum_probs=63.6
Q ss_pred hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHH
Q 010864 153 RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEA 229 (498)
Q Consensus 153 ~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a---~~~lg~~~~~~~~~~g~~~eA 229 (498)
.+|+++++|+|+|.+|+.+|+ |++|+..|++||+++|++..+ |+|+|.+|.. +|++++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGr--------------yeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEA 131 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGR--------------VKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKA 131 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHH
Confidence 589999999999999999999 999999999999999999865 9999999999 9999999
Q ss_pred HHHHHHHHHH
Q 010864 230 EELWKQATKN 239 (498)
Q Consensus 230 ~~~~~~Al~~ 239 (498)
++++++|++.
T Consensus 132 la~LrrALel 141 (453)
T PLN03098 132 ADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHh
Confidence 9766666654
No 138
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.65 E-value=9.7e-08 Score=92.68 Aligned_cols=109 Identities=18% Similarity=0.112 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
+...|+-|+.+|. |++||.+|.+++.++|.++..+.|.+.+|.+ +.+|..|. ..+
T Consensus 100 iKE~GN~yFKQgK--------------y~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk----~K~FA~AE-------~DC 154 (536)
T KOG4648|consen 100 IKERGNTYFKQGK--------------YEEAIDCYSTAIAVYPHNPVYHINRALAYLK----QKSFAQAE-------EDC 154 (536)
T ss_pred HHHhhhhhhhccc--------------hhHHHHHhhhhhccCCCCccchhhHHHHHHH----HHHHHHHH-------HhH
Confidence 5678999999999 9999999999999999999999999999999 99999888 689
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (498)
Q Consensus 241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~ 304 (498)
..|+.+|-.+..+|...|.+...+|.. .+|.+.|+.+|++.|++-+..-.++.+
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~----------~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNN----------MEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhH----------HHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 999999999999999999999999999 999999999999999977655544443
No 139
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=5.1e-07 Score=81.73 Aligned_cols=109 Identities=24% Similarity=0.280 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH-----DAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
+-+..-|+-++..|+ |++|...|..||.+.|... -.|.|.|.++.+ +++++.|+
T Consensus 96 d~lK~EGN~~F~ngd--------------yeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK----l~k~e~aI--- 154 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGD--------------YEEANSKYQEALESCPSTSTEERSILYSNRAAALIK----LRKWESAI--- 154 (271)
T ss_pred HHHHHHHHHhhhccc--------------HHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH----hhhHHHHH---
Confidence 334556888999999 9999999999999999853 578899999999 88888888
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg 302 (498)
..+.+|++++|.+..++...+.+|.++.+| ++|+..|++.++++|....+.-.+.
T Consensus 155 ----~dcsKaiel~pty~kAl~RRAeayek~ek~----------eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 155 ----EDCSKAIELNPTYEKALERRAEAYEKMEKY----------EEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred ----HHHHhhHhcCchhHHHHHHHHHHHHhhhhH----------HHHHHHHHHHHHhCcchHHHHHHHH
Confidence 799999999999999999999999999999 9999999999999999765544433
No 140
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=1.4e-06 Score=83.49 Aligned_cols=148 Identities=20% Similarity=0.164 Sum_probs=124.2
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
.+..+|..||+++..-.+.+|.+-..+..||.+|+...+ |..|..+|++.-.+.|......+.-+.
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~--------------f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQE--------------FALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999 999999999999999998877777777
Q ss_pred HHHHHHHHcCCHHHHHHHH----------------HHHHHH-------HHHHHhcCC--CCHHHHHHHHHHHHHhcCcch
Q 010864 215 AISDRAKMRGRTKEAEELW----------------KQATKN-------YEKAVQLNW--NSPQALNNWGLALQELSAIVP 269 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~----------------~~Al~~-------~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~~ 269 (498)
.+.+ .+.+..|+.-. +.|+++ .+-.++.-| +.+...+|.|.++++.|++
T Consensus 87 SLY~----A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy-- 160 (459)
T KOG4340|consen 87 SLYK----ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY-- 160 (459)
T ss_pred HHHH----hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH--
Confidence 7777 77777777432 112221 122233335 5788999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 270 AREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 270 a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
++|++.|+.|++..--.+-.-||++.+++..++
T Consensus 161 --------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~q 193 (459)
T KOG4340|consen 161 --------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ 193 (459)
T ss_pred --------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh
Confidence 999999999999998889999999999999998
No 141
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.62 E-value=7.5e-07 Score=75.97 Aligned_cols=97 Identities=24% Similarity=0.156 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
+.+++++|.++-.+|+ .++|+..|++++....+. ..++.++|.++.. +|++++|+
T Consensus 1 ~~~~~~~A~a~d~~G~--------------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~----LG~~deA~---- 58 (120)
T PF12688_consen 1 PRALYELAWAHDSLGR--------------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRN----LGRYDEAL---- 58 (120)
T ss_pred CchHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----cCCHHHHH----
Confidence 3578999999999999 999999999999985543 5799999999999 99999999
Q ss_pred HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 235 QATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 235 ~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
..+++++...|+ +..+...++.++...|++ ++|+..+-.++.
T Consensus 59 ---~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~----------~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ---ALLEEALEEFPDDELNAALRVFLALALYNLGRP----------KEALEWLLEALA 103 (120)
T ss_pred ---HHHHHHHHHCCCccccHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHH
Confidence 577888887788 888999999999999999 999999888774
No 142
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.62 E-value=9.3e-07 Score=98.72 Aligned_cols=62 Identities=10% Similarity=-0.064 Sum_probs=40.3
Q ss_pred hhhcHHHHHHHHHHhhhcc-------hhhHHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC
Q 010864 112 LAEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESAD 173 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~ 173 (498)
..++.++|..+|......+ -.++.+.|++++|+..|++..... .-+...+..+..++...|+
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4577888888887543322 445777888888888888776543 1234566666666666666
No 143
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.61 E-value=5.1e-06 Score=78.13 Aligned_cols=158 Identities=25% Similarity=0.242 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
.+..++..|..++..|+ |.+|+..|++.+...|+. ..+.+.+|.++.. .|++.+|+
T Consensus 4 ~~~~lY~~a~~~~~~g~--------------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~--- 62 (203)
T PF13525_consen 4 TAEALYQKALEALQQGD--------------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAI--- 62 (203)
T ss_dssp -HHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHH---
T ss_pred CHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHH---
Confidence 56789999999999999 999999999999998874 5789999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcc-hHHhhhhhHHHHHHHHHHHHHhcCCCHH---HH--------
Q 010864 234 KQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIV-PAREKQTIVRTAISKFRAAIQLQFDFHR---AI-------- 298 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~-~a~~~~~~~~~Ai~~~~~Al~l~P~~~~---a~-------- 298 (498)
..|++.++..|++ ..+++.+|.++..+.+-. ......+...+|+..|+..++.-|+... +.
T Consensus 63 ----~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 63 ----AAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp ----HHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 6888888888875 468999999988764320 0134556678999999999999998742 22
Q ss_pred ------HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 299 ------YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (498)
Q Consensus 299 ------~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~ 358 (498)
+.+|..|++.|. |..|+..++.+++--|+......++.++.
T Consensus 139 ~la~~e~~ia~~Y~~~~~-------------------y~aA~~r~~~v~~~yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 139 RLAEHELYIARFYYKRGK-------------------YKAAIIRFQYVIENYPDTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHHHHHHHHCTT--------------------HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc-------------------HHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 234455555555 89999999999999999987766665543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=2.3e-06 Score=75.82 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 010864 188 LEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS---PQALNNWGLAL 261 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l 261 (498)
...+...+++.+.-+|+. ..+.+.+|.++.. .|++++|. ..|++++...|+. ..+..+|+.++
T Consensus 27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~----~g~~~~A~-------~~l~~~~~~~~d~~l~~~a~l~LA~~~ 95 (145)
T PF09976_consen 27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE----QGDYDEAK-------AALEKALANAPDPELKPLARLRLARIL 95 (145)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 888988999999999998 5678889999999 99999999 5888888776654 56889999999
Q ss_pred HHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864 262 QELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 341 (498)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 341 (498)
...|++ ++|+..++. +.-.+-.+.++..+|.+|...|+ +.+|...|++|+
T Consensus 96 ~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-------------------~~~A~~~y~~Al 145 (145)
T PF09976_consen 96 LQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-------------------YDEARAAYQKAL 145 (145)
T ss_pred HHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHhC
Confidence 999999 999999976 33344456788899999999999 899999998874
No 145
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.60 E-value=4.3e-08 Score=77.03 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (498)
Q Consensus 203 p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~ 282 (498)
|+.+.+++++|.+|.. +|++++|++.|++|+..++..-...|..+.+++++|.++..+|++ ++|+.
T Consensus 2 ~~~a~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~ 67 (78)
T PF13424_consen 2 PDTANAYNNLARVYRE----LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHH
T ss_pred HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHH
Confidence 4556889999999999 999999999999998884333223345688999999999999999 99999
Q ss_pred HHHHHHHhc
Q 010864 283 KFRAAIQLQ 291 (498)
Q Consensus 283 ~~~~Al~l~ 291 (498)
+|++++++.
T Consensus 68 ~~~~al~i~ 76 (78)
T PF13424_consen 68 YYQKALDIF 76 (78)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999863
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.60 E-value=4.7e-07 Score=89.66 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=125.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
+...|++++|++.+.+. ++.++....-.+|..+++ ++.|.+.++.+-+.+.+.. ..+|+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R--------------~dlA~k~l~~~~~~~eD~~--l~qLa 170 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNR--------------PDLAEKELKNMQQIDEDSI--LTQLA 170 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCCSCCHH--HHHHH
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCcHH--HHHHH
Confidence 45579999999888764 678888889999999999 9999999999988877754 44555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.++...+....++.+|. -.|+...+..+.++..++.++.++..+|+| ++|...+++|+..+|+
T Consensus 171 ~awv~l~~g~e~~~~A~-------y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAF-------YIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPN 233 (290)
T ss_dssp HHHHHHHHTTTCCCHHH-------HHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CC
T ss_pred HHHHHHHhCchhHHHHH-------HHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccC
Confidence 55444322233677777 688887777788999999999999999999 9999999999999999
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH
Q 010864 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV 349 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~ 349 (498)
++.++.|+..+...+|+. ...+..++.+.....|+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~------------------~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKP------------------TEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHHTT-T------------------CHHHHHHHHHCHHHTTTSHH
T ss_pred CHHHHHHHHHHHHHhCCC------------------hhHHHHHHHHHHHhCCCChH
Confidence 999999999999999972 14456777888888888873
No 147
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.57 E-value=4.4e-07 Score=92.61 Aligned_cols=69 Identities=22% Similarity=0.209 Sum_probs=66.0
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHhcCcchHHhhhhhH
Q 010864 201 LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQA---LNNWGLALQELSAIVPAREKQTIV 277 (498)
Q Consensus 201 l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a---~~~lg~~l~~~g~~~~a~~~~~~~ 277 (498)
.+|+++.+|+|+|.+|.. +|+|++|+ ..|+++++++|++..+ |+|+|.+|..+|++
T Consensus 70 ~dP~~a~a~~NLG~AL~~----lGryeEAI-------a~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~---------- 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS----KGRVKDAL-------AQFETALELNPNPDEAQAAYYNKACCHAYREEG---------- 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------
Confidence 589999999999999999 99999999 7999999999999865 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q 010864 278 RTAISKFRAAIQL 290 (498)
Q Consensus 278 ~~Ai~~~~~Al~l 290 (498)
++|+.+|++|+++
T Consensus 129 dEAla~LrrALel 141 (453)
T PLN03098 129 KKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999998
No 148
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.57 E-value=2.4e-06 Score=72.93 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~ 283 (498)
.++|++|.++.. +|+.++|+ ..|++++..... -..++.++|..|..+|++ ++|+..
T Consensus 2 ~~~~~~A~a~d~----~G~~~~Ai-------~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~ 60 (120)
T PF12688_consen 2 RALYELAWAHDS----LGREEEAI-------PLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALAL 60 (120)
T ss_pred chHHHHHHHHHh----cCCHHHHH-------HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHH
Confidence 578999999999 99999999 688888876544 367899999999999999 999999
Q ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 284 FRAAIQLQFD---FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (498)
Q Consensus 284 ~~~Al~l~P~---~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~ 356 (498)
+++++...|+ +..+...++.+++..|+ +.+|+..+-.++. +..+.|.+++..
T Consensus 61 L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr-------------------~~eAl~~~l~~la--~~~~~y~ra~~~ 115 (120)
T PF12688_consen 61 LEEALEEFPDDELNAALRVFLALALYNLGR-------------------PKEALEWLLEALA--ETLPRYRRAIRF 115 (120)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHCCC-------------------HHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999999898 88889999999999999 6777777666554 344466666544
No 149
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.56 E-value=1.8e-05 Score=91.17 Aligned_cols=169 Identities=11% Similarity=0.022 Sum_probs=106.5
Q ss_pred hhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCcCC
Q 010864 112 LAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQESADNVS 176 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~ 176 (498)
..++.++|+.+|....... -.++.+.|++++|...|.+.... .|+ ...|..+-..|.+.|+
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~--- 594 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ--- 594 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC---
Confidence 4567777777776654322 44566778888888888877653 343 4667777777777777
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------
Q 010864 177 LDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-------------------- 235 (498)
Q Consensus 177 ~~~~~~~~~~~~~~A~~~~~~Al~l~-p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-------------------- 235 (498)
+++|++.|+++.+.+ +.+...|+.+...|.+ .|++++|++.|++
T Consensus 595 -----------ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k----~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 595 -----------VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ----KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred -----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777765 3456677777777777 7777777754422
Q ss_pred --------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHH
Q 010864 236 --------ATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTV 304 (498)
Q Consensus 236 --------Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~ 304 (498)
|+..+++..+.. +-+..+++.+..+|.+.|++ ++|+..|++..+. .|+ ...|+.|...
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~----------eeA~~lf~eM~~~g~~Pd-vvtyN~LI~g 728 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW----------KKALELYEDIKSIKLRPT-VSTMNALITA 728 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 223344433332 22444555555555555555 7777777766543 343 5667777777
Q ss_pred HHHcch
Q 010864 305 LYGLAE 310 (498)
Q Consensus 305 ~~~~g~ 310 (498)
|.+.|+
T Consensus 729 y~k~G~ 734 (1060)
T PLN03218 729 LCEGNQ 734 (1060)
T ss_pred HHHCCC
Confidence 777776
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.55 E-value=2.6e-07 Score=70.37 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=60.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
...|++++|+..|++++..+|++.++++.+|.+|...|+ +++|...+++++..+|++..++..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ--------------YDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------------HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 457999999999999999999999999999999999999 999999999999999998887776664
No 151
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.55 E-value=1e-05 Score=78.10 Aligned_cols=173 Identities=14% Similarity=0.075 Sum_probs=123.8
Q ss_pred CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHcCCHHHHHHH
Q 010864 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA---FYNWAIAISDRAKMRGRTKEAEEL 232 (498)
Q Consensus 156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a---~~~lg~~~~~~~~~~g~~~eA~~~ 232 (498)
..+..++..|..+...|+ |++|++.|++++...|....+ .+.+|.++.+ .+++++|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~--------------y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~-- 89 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGN--------------WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQ-- 89 (243)
T ss_pred CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHH--
Confidence 467889999999999999 999999999999999997654 4999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcC-----c---chHHhhhhhHHHHHHHHHHHHHhcCCCH---HHH
Q 010864 233 WKQATKNYEKAVQLNWNS---PQALNNWGLALQELSA-----I---VPAREKQTIVRTAISKFRAAIQLQFDFH---RAI 298 (498)
Q Consensus 233 ~~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~-----~---~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~ 298 (498)
..|++.++.+|++ +.+++.+|.++..++. + +.....+....+|+..|++.++.-|+.. .+.
T Consensus 90 -----~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~ 164 (243)
T PRK10866 90 -----AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT 164 (243)
T ss_pred -----HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 6999999998875 5789999998766652 1 1112334455789999999999999873 344
Q ss_pred HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 299 YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (498)
Q Consensus 299 ~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~ 358 (498)
..|..+...+.+.....+.. .-..+.|..|+.-++..++--|+......++..+.
T Consensus 165 ~rl~~l~~~la~~e~~ia~~-----Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~ 219 (243)
T PRK10866 165 KRLVFLKDRLAKYELSVAEY-----YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME 219 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence 43333333333321111100 00000177788888888888888887666666654
No 152
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.53 E-value=1.3e-07 Score=74.33 Aligned_cols=70 Identities=27% Similarity=0.363 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHHHHHcCCHH
Q 010864 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---C----PTLHDAFYNWAIAISDRAKMRGRTK 227 (498)
Q Consensus 155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---~----p~~~~a~~~lg~~~~~~~~~~g~~~ 227 (498)
|+.+.+++++|.+|..+|+ +++|+..|++++.+ . |..+.+++++|.++.. +|+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~ 63 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR--------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHH
Confidence 3456789999999999999 99999999999987 1 2246789999999999 99999
Q ss_pred HHHHHHHHHHHHHHH
Q 010864 228 EAEELWKQATKNYEK 242 (498)
Q Consensus 228 eA~~~~~~Al~~~~~ 242 (498)
+|++.+++|++.+++
T Consensus 64 ~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 64 EALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcC
Confidence 999888888877764
No 153
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=1.2e-06 Score=79.33 Aligned_cols=102 Identities=22% Similarity=0.184 Sum_probs=89.7
Q ss_pred hhHHhhccHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864 132 EGRSRQRILTFAAKRYANAIERNPEDY-----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 206 (498)
..++..|+|++|..-|..||++.|..+ -.|.|+|.++..++. ++.||..+.+|++++|.+-
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k--------------~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRK--------------WESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhh--------------HHHHHHHHHhhHhcCchhH
Confidence 346889999999999999999999764 468899999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg 258 (498)
.++...+.+|.+ +.+|++|+ ..|.+.++.+|...++.-...
T Consensus 169 kAl~RRAeayek----~ek~eeal-------eDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 169 KALERRAEAYEK----MEKYEEAL-------EDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHh----hhhHHHHH-------HHHHHHHHhCcchHHHHHHHH
Confidence 999999999999 88888888 699999999998765544333
No 154
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.51 E-value=3e-05 Score=77.30 Aligned_cols=187 Identities=15% Similarity=0.086 Sum_probs=134.3
Q ss_pred hhhhcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCC
Q 010864 111 QLAEQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDS 179 (498)
Q Consensus 111 q~~~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~ 179 (498)
++-++.+.+-.+++.+.... ......+|++..|..-..++++..|.+++++...-.+|+.+|+
T Consensus 129 ~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~------ 202 (400)
T COG3071 129 QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGA------ 202 (400)
T ss_pred HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhcc------
Confidence 44577777777777777662 2234456888888888888888888888888888888888888
Q ss_pred CCCchhhhHHHHHHHHHHHHHh------------------------CCCCHHH----H----------HHHHHHHHHHHH
Q 010864 180 TSPSKDALLEEACKKYDEATRL------------------------CPTLHDA----F----------YNWAIAISDRAK 221 (498)
Q Consensus 180 ~~~~~~~~~~~A~~~~~~Al~l------------------------~p~~~~a----~----------~~lg~~~~~~~~ 221 (498)
+.+.+....+.-+- +++.... | -++..+|..++-
T Consensus 203 --------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li 274 (400)
T COG3071 203 --------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLI 274 (400)
T ss_pred --------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHH
Confidence 88877777665442 1111111 1 122333333344
Q ss_pred HcCCHHHHHHHHHH------------------------HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864 222 MRGRTKEAEELWKQ------------------------ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (498)
Q Consensus 222 ~~g~~~eA~~~~~~------------------------Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~ 277 (498)
.+|+.++|.+..++ -++..++.+...|+++..+..||..+.+.+.|
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w---------- 344 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW---------- 344 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----------
Confidence 48888888876544 33567777888899999999999999999988
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHH
Q 010864 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAH 341 (498)
Q Consensus 278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 341 (498)
.+|..+|+.|+...|+ ...+..+|.++..+|+ ...|..+++.++
T Consensus 345 ~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~-------------------~~~A~~~r~e~L 388 (400)
T COG3071 345 GKASEALEAALKLRPS-ASDYAELADALDQLGE-------------------PEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC-------------------hHHHHHHHHHHH
Confidence 9999999999988887 6778888999999998 566666666655
No 155
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.50 E-value=5e-06 Score=70.36 Aligned_cols=110 Identities=23% Similarity=0.164 Sum_probs=89.1
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC----HHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL----HDAF 209 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~----~~a~ 209 (498)
....|+++.|++.|.++|.+.|..+.+|+|++..+.-+|+ .++|++.+.+|+++.-.. ..+|
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~--------------~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGD--------------DEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCC--------------hHHHHHHHHHHHHhcCccchHHHHHH
Confidence 3557999999999999999999999999999999999999 999999999999995443 3578
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHhcCCCCHHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATK-----NYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~-----~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
...|.+|.. +|+-+.|...|+.|.. .-++.+.+||--+-+...|+.++
T Consensus 119 vQRg~lyRl----~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f 171 (175)
T KOG4555|consen 119 VQRGLLYRL----LGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAF 171 (175)
T ss_pred HHHHHHHHH----hCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 889999988 9999999987776553 33455677775444444555444
No 156
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.50 E-value=3.3e-05 Score=88.97 Aligned_cols=142 Identities=6% Similarity=-0.047 Sum_probs=81.4
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPE-DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFY 210 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~ 210 (498)
++.+.|++++|...|++....... +...|..+-..|.+.|+ +++|+..|.+.....- -+...|+
T Consensus 481 ~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~--------------~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 481 TCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ--------------VAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345556666666666666554322 45666666666666666 6666666666654421 1345566
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ----LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~----l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
.+-.+|.+ .|++++|. ..|++... +.| +..+++.+-.+|.+.|++ ++|+..|++
T Consensus 547 sLI~a~~k----~G~~deA~-------~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l----------deA~elf~~ 604 (1060)
T PLN03218 547 ALISACGQ----SGAVDRAF-------DVLAEMKAETHPIDP-DHITVGALMKACANAGQV----------DRAKEVYQM 604 (1060)
T ss_pred HHHHHHHH----CCCHHHHH-------HHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH----------HHHHHHHHH
Confidence 66666666 66666666 34554443 234 356667777777777777 555555555
Q ss_pred HHHhc-CCCHHHHHHHHHHHHHcch
Q 010864 287 AIQLQ-FDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 287 Al~l~-P~~~~a~~~Lg~~~~~~g~ 310 (498)
..+.+ +.+...|+.+...|.+.|+
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~ 629 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGD 629 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCC
Confidence 55543 2334555555555555554
No 157
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=8.2e-06 Score=74.97 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=88.3
Q ss_pred HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (498)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ 196 (498)
+.|.-+|++..- +-..|-.+-|.-.|.+++.++|+.+++++.+|..+...|+ |+.|.+.|+
T Consensus 63 eRA~l~fERGvl-----YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~--------------fdaa~eaFd 123 (297)
T COG4785 63 ERAQLLFERGVL-----YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN--------------FDAAYEAFD 123 (297)
T ss_pred HHHHHHHHhcch-----hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhccc--------------chHHHHHhh
Confidence 344455555433 3456777888999999999999999999999999999999 999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864 197 EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (498)
Q Consensus 197 ~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~ 251 (498)
..++++|.+-.++.|.|+.+.- -||+.-|.+ .+.+-.+-||+++
T Consensus 124 s~~ELDp~y~Ya~lNRgi~~YY----~gR~~LAq~-------d~~~fYQ~D~~DP 167 (297)
T COG4785 124 SVLELDPTYNYAHLNRGIALYY----GGRYKLAQD-------DLLAFYQDDPNDP 167 (297)
T ss_pred hHhccCCcchHHHhccceeeee----cCchHhhHH-------HHHHHHhcCCCCh
Confidence 9999999999999999999998 999999994 5556666666655
No 158
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=9.2e-06 Score=84.33 Aligned_cols=153 Identities=19% Similarity=0.116 Sum_probs=125.4
Q ss_pred hhhcHHHHHHHHHHhhhcc---------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD---------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~ 182 (498)
+.+.+++|+.+.+.-.... ..+.+++++.++|+..++ ..++.+..++...|.+++++++
T Consensus 58 q~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~--------- 125 (652)
T KOG2376|consen 58 QLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLER--------- 125 (652)
T ss_pred hhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhh---------
Confidence 4577888886665544321 446788999999999998 5677777789999999999999
Q ss_pred chhhhHHHHHHHHHHHHHh------------------------------CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864 183 SKDALLEEACKKYDEATRL------------------------------CPT-LHDAFYNWAIAISDRAKMRGRTKEAEE 231 (498)
Q Consensus 183 ~~~~~~~~A~~~~~~Al~l------------------------------~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~ 231 (498)
|++|...|+..++- .|. ..+.+||.+.++.. .|+|.+|++
T Consensus 126 -----ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~----~gky~qA~e 196 (652)
T KOG2376|consen 126 -----YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE----NGKYNQAIE 196 (652)
T ss_pred -----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh----cccHHHHHH
Confidence 99999999987542 232 56788999999999 999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864 232 LWKQATKNYEKAVQLNWNS--------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (498)
Q Consensus 232 ~~~~Al~~~~~Al~l~P~~--------~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~ 295 (498)
.++.|+..+++-+..+-.+ ..+...|+.+|+.+|+. ++|...|...|+.+|-+.
T Consensus 197 lL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt----------~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 197 LLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT----------AEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch----------HHHHHHHHHHHHhcCCCc
Confidence 9999999999998766443 34678899999999999 999999999999887654
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=2.3e-05 Score=71.63 Aligned_cols=159 Identities=30% Similarity=0.342 Sum_probs=130.2
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC---CCHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWAL-VLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP---TLHDAF 209 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~-~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p---~~~~a~ 209 (498)
....+.+..++..+.+++..++.........+. ++...|+ +++|+..|.+++..+| .....+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGD--------------YEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCccchHHHH
Confidence 344677888888999988888877666666666 8888888 9999999999988777 355666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAI 288 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al 288 (498)
..++..+.. .+++.+++ ..+.+++...+. ....+.+++..+...+++ +.|+..+.+++
T Consensus 171 ~~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~ 229 (291)
T COG0457 171 LALGALLEA----LGRYEEAL-------ELLEKALKLNPDDDAEALLNLGLLYLKLGKY----------EEALEYYEKAL 229 (291)
T ss_pred HHhhhHHHH----hcCHHHHH-------HHHHHHHhhCcccchHHHHHhhHHHHHcccH----------HHHHHHHHHHH
Confidence 777777667 78888888 688888888888 688999999999999988 99999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 289 QLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 289 ~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
...|.....+..++..+...+. +..+...+.+++...|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 230 ELDPDNAEALYNLALLLLELGR-------------------YEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccHHHHhhHHHHHHHcCC-------------------HHHHHHHHHHHHHhCcc
Confidence 9999877888888888885554 78888888999998887
No 160
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=2.5e-05 Score=71.42 Aligned_cols=159 Identities=29% Similarity=0.313 Sum_probs=140.4
Q ss_pred HHhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIE--RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~ 211 (498)
+...+.+..++..+...+. ..+.....+..+|..+...+. +..++..+.+++...+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 134 (291)
T COG0457 69 LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGK--------------YEEALELLEKALALDPDPDLAEAL 134 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHcCCCCcchHHHH
Confidence 4557889999999999997 789999999999999999999 999999999999998887666666
Q ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864 212 WAI-AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (498)
Q Consensus 212 lg~-~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P---~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A 287 (498)
.+. ++.. .|+++.|. ..|.+++..+| .....+..++..+...+++ +.|+..+.++
T Consensus 135 ~~~~~~~~----~~~~~~a~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~ 193 (291)
T COG0457 135 LALGALYE----LGDYEEAL-------ELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKA 193 (291)
T ss_pred HHHHHHHH----cCCHHHHH-------HHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHH
Confidence 666 7888 99999999 57777777777 4677788888888888888 9999999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 288 IQLQFD-FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 288 l~l~P~-~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
+...+. ....+.+++.++...+. +..+..++.+++...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGK-------------------YEEALEYYEKALELDPD 234 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHccc-------------------HHHHHHHHHHHHhhCcc
Confidence 999999 79999999999999996 88999999999999997
No 161
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=5.3e-06 Score=85.10 Aligned_cols=117 Identities=18% Similarity=0.082 Sum_probs=106.0
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
..++++.|+..|++..+.+|+ +...++.++...++ -.+|+..+.+++..+|.+...+...+..
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------------E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------------EVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 368899999999999988875 56778999999888 8999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
+.+ .++++.|+ ...++++.+.|++..+|+.|+.+|..+|++ +.|+..++.+-..
T Consensus 244 Ll~----k~~~~lAL-------~iAk~av~lsP~~f~~W~~La~~Yi~~~d~----------e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLS----KKKYELAL-------EIAKKAVELSPSEFETWYQLAECYIQLGDF----------ENALLALNSCPML 297 (395)
T ss_pred HHh----cCCHHHHH-------HHHHHHHHhCchhHHHHHHHHHHHHhcCCH----------HHHHHHHhcCcCC
Confidence 999 99999888 799999999999999999999999999999 9998877755433
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.44 E-value=1.2e-06 Score=67.73 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=64.0
Q ss_pred HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (498)
Q Consensus 164 lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A 243 (498)
|..+|+..++ +++|++++++++.++|+++..|+.+|.++.. +|++.+|+ ..|+++
T Consensus 1 l~~~~~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~-------~~l~~~ 55 (73)
T PF13371_consen 1 LKQIYLQQED--------------YEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEAL-------EDLERA 55 (73)
T ss_pred CHHHHHhCCC--------------HHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHH-------HHHHHH
Confidence 3567888888 9999999999999999999999999999999 99999999 699999
Q ss_pred HhcCCCCHHHHHHHHH
Q 010864 244 VQLNWNSPQALNNWGL 259 (498)
Q Consensus 244 l~l~P~~~~a~~~lg~ 259 (498)
++.+|++..+....+.
T Consensus 56 l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 56 LELSPDDPDARALRAM 71 (73)
T ss_pred HHHCCCcHHHHHHHHh
Confidence 9999999887765543
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.43 E-value=1.2e-06 Score=67.59 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P 292 (498)
..+|.. .+++++|+ +.+++++.++|+++..+..+|.++..+|++ .+|+..|+++++..|
T Consensus 2 ~~~~~~----~~~~~~A~-------~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQ----QEDYEEAL-------EVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSP 60 (73)
T ss_pred HHHHHh----CCCHHHHH-------HHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCC
Confidence 456666 99999998 799999999999999999999999999999 999999999999999
Q ss_pred CCHHHHHHHH
Q 010864 293 DFHRAIYNLG 302 (498)
Q Consensus 293 ~~~~a~~~Lg 302 (498)
++..+....+
T Consensus 61 ~~~~~~~~~a 70 (73)
T PF13371_consen 61 DDPDARALRA 70 (73)
T ss_pred CcHHHHHHHH
Confidence 9888766554
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.42 E-value=8.9e-07 Score=67.38 Aligned_cols=64 Identities=19% Similarity=0.157 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~ 260 (498)
|++++|+..|++++..+|++..+++.+|.+|.. .|++++|. ..+++++..+|+++..+..++.+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~-------~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAE-------ELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHH-------HHHHCCHGGGTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHH-------HHHHHHHHHCcCHHHHHHHHhcC
Confidence 349999999999999999999999999999999 99999999 69999999999998888777653
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.42 E-value=4.1e-05 Score=81.48 Aligned_cols=180 Identities=16% Similarity=0.063 Sum_probs=127.6
Q ss_pred hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc--------
Q 010864 113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADN-------- 174 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-------- 174 (498)
.|++++|++.+......- +..+.++|++++|...|...|..||++..-+..+..++.-....
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 467777777775533322 45578899999999999999999999999988888887333210
Q ss_pred ---------CCCCCCC-------CchhhhHH------------------------------------HHHHHHHHHHHhC
Q 010864 175 ---------VSLDSTS-------PSKDALLE------------------------------------EACKKYDEATRLC 202 (498)
Q Consensus 175 ---------~~~~~~~-------~~~~~~~~------------------------------------~A~~~~~~Al~l~ 202 (498)
..|.+.. ......|. +-...|...++.+
T Consensus 97 ~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence 0011110 00001111 1111111111111
Q ss_pred ------------CCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc
Q 010864 203 ------------PTL--HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV 268 (498)
Q Consensus 203 ------------p~~--~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~ 268 (498)
|.. .-+++.++..|.. .|++++|+ .+.++||+..|..++.+...|.+|...|++
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~----~g~~~~Al-------~~Id~aI~htPt~~ely~~KarilKh~G~~- 244 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDY----LGDYEKAL-------EYIDKAIEHTPTLVELYMTKARILKHAGDL- 244 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-
Confidence 111 1255777888888 99999888 799999999999999999999999999999
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHH
Q 010864 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTL 313 (498)
Q Consensus 269 ~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~ 313 (498)
++|..+++.|-.+++.+--+....+..+.+.|+...
T Consensus 245 ---------~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 245 ---------KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred ---------HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998888888888888886433
No 166
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.40 E-value=1.4e-05 Score=67.69 Aligned_cols=102 Identities=32% Similarity=0.357 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
+-.-|..+.+.|+ ++.|++.|.++|.+.|.++.+|+|.+.++.- +|+.++|+ ..+
T Consensus 46 LEl~~valaE~g~--------------Ld~AlE~F~qal~l~P~raSayNNRAQa~RL----q~~~e~AL-------dDL 100 (175)
T KOG4555|consen 46 LELKAIALAEAGD--------------LDGALELFGQALCLAPERASAYNNRAQALRL----QGDDEEAL-------DDL 100 (175)
T ss_pred HHHHHHHHHhccc--------------hHHHHHHHHHHHHhcccchHhhccHHHHHHH----cCChHHHH-------HHH
Confidence 3446788889999 9999999999999999999999999999988 99999999 578
Q ss_pred HHHHhcCCCC----HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864 241 EKAVQLNWNS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (498)
Q Consensus 241 ~~Al~l~P~~----~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a 297 (498)
++|+++.-+. -+++...|.+|..+|+- +.|...|+.|-++...++.-
T Consensus 101 n~AleLag~~trtacqa~vQRg~lyRl~g~d----------d~AR~DFe~AA~LGS~FAr~ 151 (175)
T KOG4555|consen 101 NKALELAGDQTRTACQAFVQRGLLYRLLGND----------DAARADFEAAAQLGSKFARE 151 (175)
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHHHhCch----------HHHHHhHHHHHHhCCHHHHH
Confidence 8888776443 36788999999999999 99999999999887766543
No 167
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.39 E-value=0.00015 Score=72.37 Aligned_cols=208 Identities=15% Similarity=0.079 Sum_probs=156.1
Q ss_pred hhhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcCCCCCC
Q 010864 112 LAEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPE-DYDALYNWALVLQESADNVSLDST 180 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~~~~~ 180 (498)
..|++..|..++.+..... ...-...|+++.|-.+..++-+..++ .-.....++.++...|+
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d------- 168 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD------- 168 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC-------
Confidence 4577777777776654444 12234568999999999999888443 34567778888888888
Q ss_pred CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------HHH-HHH
Q 010864 181 SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ------------------ATK-NYE 241 (498)
Q Consensus 181 ~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------------------Al~-~~~ 241 (498)
+..|.....++++..|.+..+....-.+|.. .|++.+......+ |.. ..+
T Consensus 169 -------~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~----~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 169 -------YPAARENVDQLLEMTPRHPEVLRLALRAYIR----LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred -------chhHHHHHHHHHHhCcCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999876532 111 111
Q ss_pred HH------------HhcCC----CCHHHHHHHHHHHHHhcCcchHH---------------------hhhhhHHHHHHHH
Q 010864 242 KA------------VQLNW----NSPQALNNWGLALQELSAIVPAR---------------------EKQTIVRTAISKF 284 (498)
Q Consensus 242 ~A------------l~l~P----~~~~a~~~lg~~l~~~g~~~~a~---------------------~~~~~~~~Ai~~~ 284 (498)
++ .+--| +++.....++.-+.++|.+++|. -+.++...=++..
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHH
Confidence 11 11112 34566667777788888887771 1245666667777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 285 RAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (498)
Q Consensus 285 ~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~ 356 (498)
++.++..|+++..+..||..|++.+. |.+|..+++.|+++.|+...+...-..
T Consensus 318 e~~l~~h~~~p~L~~tLG~L~~k~~~-------------------w~kA~~~leaAl~~~~s~~~~~~la~~ 370 (400)
T COG3071 318 EKWLKQHPEDPLLLSTLGRLALKNKL-------------------WGKASEALEAALKLRPSASDYAELADA 370 (400)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHhhH-------------------HHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 88888899999999999999999998 999999999999999998866554443
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.1e-05 Score=79.10 Aligned_cols=160 Identities=15% Similarity=0.046 Sum_probs=121.1
Q ss_pred hcHHHHHHHHHHhhhcc-----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864 114 EQNNAAMELINSVTGVD-----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~-----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~ 182 (498)
.++.-|+.+++-....+ +-+++.+|+|++|+..|.-+.+.+--+.+.+.+|+.+++.+|.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~--------- 106 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQ--------- 106 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHH---------
Confidence 45566666665554444 3467889999999999999988777788999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHHHHH------HHHcCCHHHHHHHHHHH
Q 010864 183 SKDALLEEACKKYDEATRLCPTLH--------------------DAFYNWAIAISDR------AKMRGRTKEAEELWKQA 236 (498)
Q Consensus 183 ~~~~~~~~A~~~~~~Al~l~p~~~--------------------~a~~~lg~~~~~~------~~~~g~~~eA~~~~~~A 236 (498)
|.+|...-.+| |+++ ..+.+|+.+..++ .+++. .|++|
T Consensus 107 -----Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~-------HYQeA 170 (557)
T KOG3785|consen 107 -----YIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRM-------HYQEA 170 (557)
T ss_pred -----HHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHH-------HHHHH
Confidence 99998776654 3322 2223333333221 11222 35666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864 237 TKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (498)
Q Consensus 237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~ 308 (498)
+..|.+.+.-+|+......+++.+|+++.-| +-+.+.+.--++..|+..-+.+.++-.++++
T Consensus 171 IdvYkrvL~dn~ey~alNVy~ALCyyKlDYy----------dvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 171 IDVYKRVLQDNPEYIALNVYMALCYYKLDYY----------DVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHHHhcchh----------hhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999 9999999999999999999888888777665
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.36 E-value=9.1e-07 Score=87.60 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=110.3
Q ss_pred HhhccHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHh-cCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC--C-
Q 010864 135 SRQRILTFAAKRYANAIERN--PED----YDALYNWALVLQES-ADNVSLDSTSPSKDALLEEACKKYDEATRLCP--T- 204 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~--P~~----~~a~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p--~- 204 (498)
++..++++|+.+|++|+.+. -++ +.++..+|.+|... |+ +++|+++|++|+.+.. +
T Consensus 85 ~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d--------------~e~Ai~~Y~~A~~~y~~e~~ 150 (282)
T PF14938_consen 85 YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGD--------------YEKAIEYYQKAAELYEQEGS 150 (282)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----------------HHHHHHHHHHHHHHHHHTT-
T ss_pred HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHCCC
Confidence 45569999999999999863 222 56788999999888 88 9999999999999822 1
Q ss_pred ---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864 205 ---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN---W----NSPQALNNWGLALQELSAIVPAREKQ 274 (498)
Q Consensus 205 ---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~---P----~~~~a~~~lg~~l~~~g~~~~a~~~~ 274 (498)
...++.++|.++.. +|+|++|++ .|++..... + +....+...+.++...|++
T Consensus 151 ~~~a~~~~~~~A~l~~~----l~~y~~A~~-------~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~------- 212 (282)
T PF14938_consen 151 PHSAAECLLKAADLYAR----LGRYEEAIE-------IYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDY------- 212 (282)
T ss_dssp HHHHHHHHHHHHHHHHH----TT-HHHHHH-------HHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-H-------
T ss_pred hhhHHHHHHHHHHHHHH----hCCHHHHHH-------HHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCH-------
Confidence 23577899999999 999999995 555555432 1 1224567888899999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 275 TIVRTAISKFRAAIQLQFDFH-----RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~~-----~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
-.|...|++....+|.+. .....|-.++..... +.+..++..|.+...||+-
T Consensus 213 ---v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~-----------------e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 213 ---VAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV-----------------EAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp ---HHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C-----------------CCHHHHCHHHTTSS---HH
T ss_pred ---HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHcccCccHHH
Confidence 999999999999998763 334444444333221 1267777777776666553
No 170
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.36 E-value=2.1e-05 Score=87.92 Aligned_cols=150 Identities=11% Similarity=-0.108 Sum_probs=101.1
Q ss_pred hhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-CCHHHHH
Q 010864 132 EGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-TLHDAFY 210 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-~~~~a~~ 210 (498)
..+.+.|++++|...|++. .+.+..+|+.+...|.+.|+ +++|+..|++..+..- -+...|.
T Consensus 267 ~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~--------------~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGY--------------SEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3578899999999999875 45688999999999999999 9999999999877532 2456788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchH-------------------
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPA------------------- 270 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a------------------- 270 (498)
.+..++.+ .|++++|.+. +...++.. +.+..+++.|...|.+.|++++|
T Consensus 330 ~ll~a~~~----~g~~~~a~~i-------~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 330 IMIRIFSR----LALLEHAKQA-------HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred HHHHHHHh----ccchHHHHHH-------HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 88888888 8888888853 33333333 23444555555555555555333
Q ss_pred --HhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcch
Q 010864 271 --REKQTIVRTAISKFRAAIQL--QFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 271 --~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+.+.|+.++|+..|++.++. .|+ ...+..+-.++...|.
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGL 441 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCc
Confidence 12233447777777776653 344 4455555555655554
No 171
>PLN03077 Protein ECB2; Provisional
Probab=98.32 E-value=3.9e-05 Score=87.82 Aligned_cols=147 Identities=10% Similarity=-0.007 Sum_probs=103.2
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--CCCCHHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--CPTLHDAFY 210 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--~p~~~~a~~ 210 (498)
.+.+.|++++|...|+.. +.+..+|+.+...|...|+ .++|++.|++..+. .|+ ...|.
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~--------------~~~A~~lf~~M~~~g~~Pd-~~T~~ 593 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGK--------------GSMAVELFNRMVESGVNPD-EVTFI 593 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCC-cccHH
Confidence 456678888888888775 5567788888888888888 88888888877764 344 34455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHhcCcchH-----------------
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV---QLNWNSPQALNNWGLALQELSAIVPA----------------- 270 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~~a----------------- 270 (498)
.+-.++.+ .|++++|.+ .|+... .+.| +...++.+..+|.+.|++++|
T Consensus 594 ~ll~a~~~----~g~v~ea~~-------~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~ 661 (857)
T PLN03077 594 SLLCACSR----SGMVTQGLE-------YFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661 (857)
T ss_pred HHHHHHhh----cChHHHHHH-------HHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHH
Confidence 55556767 788777774 444443 2234 346777777777777777555
Q ss_pred -----HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 271 -----REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 271 -----~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
....++.+.+....++.++++|++...|..|+.+|...|+
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 1224555777777888888888888888888888888887
No 172
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=2e-06 Score=78.90 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al 237 (498)
+..++.+|..|-.+|- ..-|.-.|.+++.+.|+.+++++.||.-+.. .|+|+.|.
T Consensus 65 A~l~fERGvlYDSlGL--------------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~----a~~fdaa~------- 119 (297)
T COG4785 65 AQLLFERGVLYDSLGL--------------RALARNDFSQALAIRPDMPEVFNYLGIYLTQ----AGNFDAAY------- 119 (297)
T ss_pred HHHHHHhcchhhhhhH--------------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh----cccchHHH-------
Confidence 3456667777777776 9999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~ 295 (498)
..|...+++||.+-.++.|.|..++--|++ .-|.+.|.+-.+-+|+++
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~----------~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALYYGGRY----------KLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeeeecCch----------HhhHHHHHHHHhcCCCCh
Confidence 699999999999999999999999999999 888888888888888876
No 173
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=2.1e-05 Score=80.79 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
++.|+..|++..+.+|+ +...++.++.. .++-.+|+ ..+.+++..+|.+...+...+..|...+++
T Consensus 185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~----~~~E~~AI-------~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 185 YDEAIELLEKLRERDPE---VAVLLARVYLL----MNEEVEAI-------RLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHHHHHhcCCc---HHHHHHHHHHh----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 99999999999998876 55668888887 88887777 788999999999999999999999999999
Q ss_pred chHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 268 VPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+.|+...++++++.|++...|+.|+.+|..+|+
T Consensus 251 ----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 251 ----------ELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred ----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999998
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.26 E-value=5e-06 Score=82.41 Aligned_cols=152 Identities=15% Similarity=0.094 Sum_probs=114.1
Q ss_pred hhcHHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864 113 AEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~ 187 (498)
.++++.|+.++.+..... -..+.+.++++.|...++..-+.+.+..-....-+++....|. +.
T Consensus 115 ~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~------------e~ 182 (290)
T PF04733_consen 115 EGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG------------EK 182 (290)
T ss_dssp CCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT------------TC
T ss_pred cCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc------------hh
Confidence 355666666665542222 2346778999999999999988887766555555666666663 23
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
+.+|.-.|+......+..+..++.++.++.. +|++++|. ..+.+++..+|+++.++.|+..+...+|+.
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe-------~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAE-------ELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHH-------HHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHH-------HHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 8999999999888778899999999999999 99999999 588889999999999999999999999986
Q ss_pred chHHhhhhhHHH-HHHHHHHHHHhcCCCHHH
Q 010864 268 VPAREKQTIVRT-AISKFRAAIQLQFDFHRA 297 (498)
Q Consensus 268 ~~a~~~~~~~~~-Ai~~~~~Al~l~P~~~~a 297 (498)
.+ +.+++.+....+|+++.+
T Consensus 252 ----------~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 252 ----------TEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp ----------CHHHHHHHHHCHHHTTTSHHH
T ss_pred ----------hhHHHHHHHHHHHhCCCChHH
Confidence 44 555777777788987754
No 175
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=8.3e-05 Score=77.41 Aligned_cols=185 Identities=15% Similarity=0.038 Sum_probs=133.3
Q ss_pred hhcHHHHHHHHHHhhhcc----------hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Q 010864 113 AEQNNAAMELINSVTGVD----------EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSP 182 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~----------~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~ 182 (498)
.+++++|....++++... --+....++|++|+...+.-....-.+ ...+..+.|++++++
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk--------- 94 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNK--------- 94 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHccc---------
Confidence 367778888777777763 123456788888884443322211111 222788999999999
Q ss_pred chhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHH-----
Q 010864 183 SKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA------------------TKN----- 239 (498)
Q Consensus 183 ~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A------------------l~~----- 239 (498)
.++|+..++ .+++.+..+....|.++.+ +|+|++|.+.|+.- ...
T Consensus 95 -----~Dealk~~~---~~~~~~~~ll~L~AQvlYr----l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 95 -----LDEALKTLK---GLDRLDDKLLELRAQVLYR----LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred -----HHHHHHHHh---cccccchHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 999999998 5677777788888888888 99999999888531 111
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--------cCC-------CHHHHHHHHH
Q 010864 240 YEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFD-------FHRAIYNLGT 303 (498)
Q Consensus 240 ~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--------~P~-------~~~a~~~Lg~ 303 (498)
..+.+...|. ..+.++|.+.++...|+| .+|++.+++|+++ +-+ -..+...|+.
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky----------~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKY----------NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 1222333344 667899999999999999 9999999999654 111 1346778899
Q ss_pred HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 304 VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
++..+|+ -.+|...|...++.+|.+.
T Consensus 233 VlQ~~Gq-------------------t~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 233 VLQLQGQ-------------------TAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHhcc-------------------hHHHHHHHHHHHHhcCCCc
Confidence 9999998 6788888888888888776
No 176
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.5e-06 Score=78.42 Aligned_cols=91 Identities=21% Similarity=0.101 Sum_probs=83.5
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
++..++|+.||.+|.++|.++|..+.-|.|.+.+|+++.+ ++.......+|+++.|+...+++.||
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~--------------~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKH--------------WEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhh--------------hhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 5667899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEK 242 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~ 242 (498)
.++.. ...|.+|+..+++|...++.
T Consensus 86 ~~~l~----s~~~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 86 QWLLQ----SKGYDEAIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHh----hccccHHHHHHHHHHHHHhc
Confidence 99999 99999999766666555553
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.23 E-value=0.00019 Score=68.25 Aligned_cols=162 Identities=20% Similarity=0.128 Sum_probs=123.3
Q ss_pred HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHH
Q 010864 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193 (498)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~ 193 (498)
..+..+++.+... .+.|++++|+..|+......|.. ..+...++.++++.++ |++|+.
T Consensus 32 ~p~~~LY~~g~~~-----L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~--------------y~~A~~ 92 (254)
T COG4105 32 LPASELYNEGLTE-----LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGE--------------YDLALA 92 (254)
T ss_pred CCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhccc--------------HHHHHH
Confidence 3456777777655 66899999999999999988765 4689999999999999 999999
Q ss_pred HHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH---HH-------------
Q 010864 194 KYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ---AL------------- 254 (498)
Q Consensus 194 ~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~---a~------------- 254 (498)
..++-+++.|++. .++|..|.++... ..+...=...-.+|+..|+..++.-|++.- +.
T Consensus 93 ~~drFi~lyP~~~n~dY~~YlkgLs~~~~---i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 93 YIDRFIRLYPTHPNADYAYYLKGLSYFFQ---IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcc---CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 9999999988754 4788888887652 222222223335677899999999998532 21
Q ss_pred -HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcch
Q 010864 255 -NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF---HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 255 -~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~---~~a~~~Lg~~~~~~g~ 310 (498)
..+|..|.+.|.+ -.|+.-++..++--|+. .+++..+..+|..+|-
T Consensus 170 Em~IaryY~kr~~~----------~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 170 EMAIARYYLKRGAY----------VAAINRFEEVLENYPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHHHHHhcCh----------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCC
Confidence 2334445555555 99999999999986665 4678888999999995
No 178
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.21 E-value=7.1e-05 Score=86.14 Aligned_cols=163 Identities=12% Similarity=0.007 Sum_probs=126.3
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----
Q 010864 134 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---- 204 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---- 204 (498)
+...|++++|...++++++..+.. ..++..+|.++...|+ +++|...+++++.+...
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~--------------~~~A~~~~~~al~~~~~~g~~ 527 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE--------------LARALAMMQQTEQMARQHDVY 527 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcch
Confidence 346799999999999999865543 2466889999999999 99999999999987432
Q ss_pred --CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHH
Q 010864 205 --LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSAIVPAREKQTIVRTAI 281 (498)
Q Consensus 205 --~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai 281 (498)
...++.++|.++.. .|++++|...+++++...++.-... +....++..+|.+++..|++ ++|.
T Consensus 528 ~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~----------~~A~ 593 (903)
T PRK04841 528 HYALWSLLQQSEILFA----QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL----------DEAE 593 (903)
T ss_pred HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH----------HHHH
Confidence 13466788999988 9999999988888877666532111 22345577889999999999 9999
Q ss_pred HHHHHHHHhcCC-----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 010864 282 SKFRAAIQLQFD-----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHAL 343 (498)
Q Consensus 282 ~~~~~Al~l~P~-----~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 343 (498)
..+++++.+... ...++.++|.++...|+ +..|...+.++..+
T Consensus 594 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~-------------------~~~A~~~l~~a~~~ 641 (903)
T PRK04841 594 QCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD-------------------LDNARRYLNRLENL 641 (903)
T ss_pred HHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHH
Confidence 999999886322 35567778999999998 67777777777665
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=2.8e-05 Score=74.49 Aligned_cols=105 Identities=24% Similarity=0.294 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A 236 (498)
-.|+.|.-++..|+ |..|...|..-++..|+. +.++|.||.++.. +|++.+|.
T Consensus 143 ~~Y~~A~~~~ksgd--------------y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~----qg~y~~Aa------ 198 (262)
T COG1729 143 KLYNAALDLYKSGD--------------YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA----QGDYEDAA------ 198 (262)
T ss_pred HHHHHHHHHHHcCC--------------HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh----cccchHHH------
Confidence 38999999999999 999999999999999984 6799999999999 99999999
Q ss_pred HHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 237 TKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 237 l~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
..|..+++-.|+ -+++++.||.++.++|+. ++|...|++.++.-|+...+..
T Consensus 199 -~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~----------d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 199 -YIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT----------DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred -HHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH----------HHHHHHHHHHHHHCCCCHHHHH
Confidence 577777766655 578999999999999999 9999999999999999876654
No 180
>PLN03077 Protein ECB2; Provisional
Probab=98.20 E-value=0.00015 Score=83.03 Aligned_cols=175 Identities=14% Similarity=0.004 Sum_probs=89.3
Q ss_pred hhcHHHHHHHHHHhhhcc-------hhhHHhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcCCCCCCCCc
Q 010864 113 AEQNNAAMELINSVTGVD-------EEGRSRQRILTFAAKRYANAIERN--PEDYDALYNWALVLQESADNVSLDSTSPS 183 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~~~~~~~~ 183 (498)
.+..++|..+|......+ -.++.+.|++++|+..|++..+.. |+.. .+..+=..+...|+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~-t~~~ll~a~~~~g~---------- 404 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI-TIASVLSACACLGD---------- 404 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce-eHHHHHHHHhccch----------
Confidence 456666666665543322 344666677777777776654432 4432 22222234444444
Q ss_pred hhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH------------------------HHHH
Q 010864 184 KDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWK------------------------QATK 238 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~------------------------~Al~ 238 (498)
+++|.+.+..+++.... +..+++.|-..|.+ .|++++|.+.|+ +|+.
T Consensus 405 ----~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 405 ----LDVGVKLHELAERKGLISYVVVANALIEMYSK----CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred ----HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 55555555544444222 23344444444444 444444444332 2335
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH-------------------------HhhhhhHHHHHHHHHHHHHhcCC
Q 010864 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPA-------------------------REKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a-------------------------~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.|++.+..-+-+..++..+-.++.+.|..+.+ +.+.|++++|...|++. +.
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~ 552 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EK 552 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CC
Confidence 55555533222334444444444444443322 33445558888777765 45
Q ss_pred CHHHHHHHHHHHHHcch
Q 010864 294 FHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~ 310 (498)
+...|+.+...|...|+
T Consensus 553 d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 553 DVVSWNILLTGYVAHGK 569 (857)
T ss_pred ChhhHHHHHHHHHHcCC
Confidence 57778888888877776
No 181
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=4.1e-06 Score=77.98 Aligned_cols=83 Identities=23% Similarity=0.218 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
.|..|+.+|.+|+.++|..+..|.|.+.++.+ +.+++... ..+++|++++|+.+.+++.+|.++.+...
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk----~~~~~~v~-------~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLK----LKHWEPVE-------EDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHH----hhhhhhhh-------hhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 49999999999999999999999999999999 77777777 79999999999999999999999999999
Q ss_pred cchHHhhhhhHHHHHHHHHHHHHh
Q 010864 267 IVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 267 ~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
| ++||..+.+|..+
T Consensus 94 ~----------~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 Y----------DEAIKVLQRAYSL 107 (284)
T ss_pred c----------cHHHHHHHHHHHH
Confidence 9 9999999999765
No 182
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.18 E-value=0.0001 Score=84.93 Aligned_cols=189 Identities=15% Similarity=0.038 Sum_probs=135.4
Q ss_pred hhcHHHHHHHHHHhhhcc----------------hhhHHhhccHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHH
Q 010864 113 AEQNNAAMELINSVTGVD----------------EEGRSRQRILTFAAKRYANAIERNPE--------DYDALYNWALVL 168 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~----------------~~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~lg~~~ 168 (498)
.++++.|...+.++.... ...+...|++++|...+++++.+... ....+..+|.++
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 466677766666655321 22345679999999999999876321 234566789999
Q ss_pred HHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 010864 169 QESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKA 243 (498)
Q Consensus 169 ~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~A 243 (498)
+..|+ +++|...+++++.+... ...++.++|.++.. .|++++|...++++...+...
T Consensus 584 ~~~G~--------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 584 WEWAR--------------LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred HHhcC--------------HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcc
Confidence 99999 99999999999887332 34567778888888 999999998887776543321
Q ss_pred H--------------------------------hcCC--CC----HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864 244 V--------------------------------QLNW--NS----PQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (498)
Q Consensus 244 l--------------------------------~l~P--~~----~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~ 285 (498)
- ...+ .. ...+.++|.++...|++ ++|+..|+
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~l~ 715 (903)
T PRK04841 646 RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----------DEAEIILE 715 (903)
T ss_pred cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHH
Confidence 0 0000 00 11145677777777777 99999999
Q ss_pred HHHHhc------CCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 286 AAIQLQ------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 286 ~Al~l~------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+++... .+...++..+|.++...|+ ..+|..++.+|+++.....
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~-------------------~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGR-------------------KSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHHHHhCccc
Confidence 999863 2334678889999999998 7899999999998875544
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.17 E-value=3.6e-05 Score=73.78 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=92.7
Q ss_pred HHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHH
Q 010864 121 ELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDE 197 (498)
Q Consensus 121 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~ 197 (498)
..|+.++.. ++.|+|..|...|..-+...|+. +.++|+||.+++.+|+ |+.|...|..
T Consensus 143 ~~Y~~A~~~-----~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~--------------y~~Aa~~f~~ 203 (262)
T COG1729 143 KLYNAALDL-----YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD--------------YEDAAYIFAR 203 (262)
T ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc--------------chHHHHHHHH
Confidence 356666554 66899999999999999999876 6899999999999999 9999999999
Q ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864 198 ATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (498)
Q Consensus 198 Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~ 256 (498)
+++-.|+ -+++++.||.++.+ +|+.++|. ..|+++++..|+...+..-
T Consensus 204 ~~k~~P~s~KApdallKlg~~~~~----l~~~d~A~-------atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 204 VVKDYPKSPKAPDALLKLGVSLGR----LGNTDEAC-------ATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHhCCCCCCChHHHHHHHHHHHH----hcCHHHHH-------HHHHHHHHHCCCCHHHHHH
Confidence 9999776 46899999999999 99999999 6889999999988766543
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.15 E-value=7.5e-05 Score=65.05 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
.+..++.-|...++.|+ |++|++.|+......|. ...+...||.+|.+ .+++.+|+
T Consensus 9 ~~~~ly~~a~~~l~~~~--------------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~----~~~y~~A~--- 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGN--------------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK----QGDYEEAI--- 67 (142)
T ss_pred CHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH----ccCHHHHH---
Confidence 35678999999999999 99999999999999876 45789999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcC--cc---hHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864 234 KQATKNYEKAVQLNWNSP---QALNNWGLALQELSA--IV---PAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~--~~---~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a 297 (498)
..+++-++++|+++ .+++..|.++.++.. ++ ......+....|...|++.|+.-|+..-+
T Consensus 68 ----a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 68 ----AAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred ----HHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 79999999998864 689999999988765 00 01233455699999999999999987643
No 185
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.13 E-value=5.2e-05 Score=66.03 Aligned_cols=101 Identities=25% Similarity=0.246 Sum_probs=82.7
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HH
Q 010864 135 SRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DA 208 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a 208 (498)
.+.|+|++|++.|+......|.. ..+...+|.+|+..++ +++|+..|++.++++|++. .+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~--------------y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGD--------------YEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCCCCccHH
Confidence 56899999999999999988765 5789999999999999 9999999999999999865 58
Q ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 010864 209 FYNWAIAISDRAKMRGR--------TKEAEELWKQATKNYEKAVQLNWNSPQA 253 (498)
Q Consensus 209 ~~~lg~~~~~~~~~~g~--------~~eA~~~~~~Al~~~~~Al~l~P~~~~a 253 (498)
++..|.++.. +.. .+.=....++|+..|++.+..-|++..+
T Consensus 87 ~Y~~gL~~~~----~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 87 YYMRGLSYYE----QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHH----HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999988 543 2222223355668999999999987644
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.13 E-value=0.00045 Score=62.35 Aligned_cols=131 Identities=18% Similarity=0.134 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHH
Q 010864 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTLHDAFYNWAIAISDRAK 221 (498)
Q Consensus 143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~~~~a~~~lg~~~~~~~~ 221 (498)
...-..+.++..|.. .-.+.||..+.++|+ +.+|...|++++. +.-+++..+..++.+.+.
T Consensus 75 ~~Rea~~~~~~ApTv-qnr~rLa~al~elGr--------------~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa--- 136 (251)
T COG4700 75 HLREATEELAIAPTV-QNRYRLANALAELGR--------------YHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA--- 136 (251)
T ss_pred HHHHHHHHHhhchhH-HHHHHHHHHHHHhhh--------------hhhhHHHHHHHhccccCCCHHHHHHHHHHHHh---
Confidence 333344445555554 446789999999999 9999999999986 466788889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 222 MRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 222 ~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
.+++.+|. ..+++..+.+|. .+.....+|.+|..+|++ .+|...|+.++..-|+ +.+..
T Consensus 137 -~~~~A~a~-------~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~----------a~Aesafe~a~~~ypg-~~ar~ 197 (251)
T COG4700 137 -IQEFAAAQ-------QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKY----------ADAESAFEVAISYYPG-PQARI 197 (251)
T ss_pred -hccHHHHH-------HHHHHHhhcCCccCCCCchHHHHHHHHhcCCc----------hhHHHHHHHHHHhCCC-HHHHH
Confidence 99999998 688888888886 678888999999999999 9999999999999988 55555
Q ss_pred HHHHHHHHcch
Q 010864 300 NLGTVLYGLAE 310 (498)
Q Consensus 300 ~Lg~~~~~~g~ 310 (498)
..+..+.++|+
T Consensus 198 ~Y~e~La~qgr 208 (251)
T COG4700 198 YYAEMLAKQGR 208 (251)
T ss_pred HHHHHHHHhcc
Confidence 56888888886
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.10 E-value=0.00014 Score=65.60 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=95.7
Q ss_pred hHHhhccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--CHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIE-RNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAF 209 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~~~a~ 209 (498)
.....|++.+|...|++++. +..+++..+..++.+.+..++ +..|...+++..+.+|. .++.+
T Consensus 98 al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~--------------~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 98 ALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE--------------FAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred HHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHhhcCCccCCCCch
Confidence 35678999999999999986 678899999999999999999 99999999999999986 67788
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
..+|.+|.. +|++.+|.. .|+.++...| .+++...++..+..+|+.
T Consensus 164 Ll~aR~laa----~g~~a~Aes-------afe~a~~~yp-g~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 164 LLFARTLAA----QGKYADAES-------AFEVAISYYP-GPQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHHHHHHHh----cCCchhHHH-------HHHHHHHhCC-CHHHHHHHHHHHHHhcch
Confidence 999999999 999999995 5555555555 578888999999999988
No 188
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.09 E-value=7.9e-05 Score=76.55 Aligned_cols=192 Identities=20% Similarity=0.127 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY 195 (498)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~ 195 (498)
...|.+++.++- +..+...-+++-.+||+++|+.+++|..|+.-... . ..+|.+.|
T Consensus 168 ~r~Aq~IMq~AW--------RERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~--T--------------i~Eae~l~ 223 (539)
T PF04184_consen 168 LRPAQEIMQKAW--------RERNPQARIKAAKEALEINPDCADAYILLAEEEAS--T--------------IVEAEELL 223 (539)
T ss_pred cCHHHHHHHHHH--------hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc--C--------------HHHHHHHH
Confidence 345555555543 35677788999999999999999999988764322 1 55666666
Q ss_pred HHHHHhCCC-------------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-
Q 010864 196 DEATRLCPT-------------------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN- 249 (498)
Q Consensus 196 ~~Al~l~p~-------------------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~- 249 (498)
+++++.... ...+-..||++..+ +|+.+||+ +.|+..++.+|.
T Consensus 224 rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCark----lGr~~EAI-------k~~rdLlke~p~~ 292 (539)
T PF04184_consen 224 RQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARK----LGRLREAI-------KMFRDLLKEFPNL 292 (539)
T ss_pred HHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHH----hCChHHHH-------HHHHHHHhhCCcc
Confidence 666654110 12345678888888 99999999 688888887775
Q ss_pred -CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864 250 -SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (498)
Q Consensus 250 -~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~ 327 (498)
+..++.||-.+|..++.| .++...+.+-=.+ -|+.+.+.|.-+.+..+...+..... ...-...+++
T Consensus 293 ~~l~IrenLie~LLelq~Y----------ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e-~a~rRGls~a 361 (539)
T PF04184_consen 293 DNLNIRENLIEALLELQAY----------ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE-AASRRGLSPA 361 (539)
T ss_pred chhhHHHHHHHHHHhcCCH----------HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch-hhhhcCCChh
Confidence 567999999999999999 8888777774323 26667777776655443221110000 0000011222
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864 328 ELYSQSAIYIAAAHALKPSYSVYSSALR 355 (498)
Q Consensus 328 ~~~~~A~~~~~~Al~l~p~~~~~~~~l~ 355 (498)
-..|.+.+.+|.+.+|..+.|...++
T Consensus 362 --e~~aveAi~RAvefNPHVp~YLLe~K 387 (539)
T PF04184_consen 362 --EMNAVEAIHRAVEFNPHVPKYLLEMK 387 (539)
T ss_pred --HHHHHHHHHHHHHhCCCCchhhhccC
Confidence 24588899999999999998765543
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00053 Score=65.05 Aligned_cols=164 Identities=14% Similarity=0.098 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 010864 141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-PTLHDAFYNWAIAISDR 219 (498)
Q Consensus 141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p~~~~a~~~lg~~~~~~ 219 (498)
+..++.+++-+. ...+.+..++...+. |.-.+..|.+.++.+ |..+.....||.+-++
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kE--------------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ- 224 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKE--------------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ- 224 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchh--------------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-
Confidence 344555555432 355666677777777 777777777777776 4566677777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864 220 AKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (498)
Q Consensus 220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a 297 (498)
.|+.+.|...|+...+. +-.++ -.+.-.+.|.+.++.-.+++ ..|...|.++++.+|.++.+
T Consensus 225 ---~GD~k~a~~yf~~vek~---~~kL~~~q~~~~V~~n~a~i~lg~nn~----------a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 225 ---IGDIKTAEKYFQDVEKV---TQKLDGLQGKIMVLMNSAFLHLGQNNF----------AEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred ---cccHHHHHHHHHHHHHH---HhhhhccchhHHHHhhhhhheecccch----------HHHHHHHhhccccCCCchhh
Confidence 77777777544433221 11222 22344556666666666666 77777777788888877877
Q ss_pred HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 010864 298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSM 360 (498)
Q Consensus 298 ~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~~ 360 (498)
.+|.+.|+..+|+ ...|++.++.++...|....-.+.+--++.+
T Consensus 289 ~NnKALcllYlg~-------------------l~DAiK~~e~~~~~~P~~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 289 NNNKALCLLYLGK-------------------LKDALKQLEAMVQQDPRHYLHESVLFNLTTM 332 (366)
T ss_pred hchHHHHHHHHHH-------------------HHHHHHHHHHHhccCCccchhhhHHHHHHHH
Confidence 7888887777777 6777777777777777765443333333333
No 190
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.00015 Score=68.00 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-----------hcCCCCHHHHHHHHHHHHHhcCcchHHhhh
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-----------QLNWNSPQALNNWGLALQELSAIVPAREKQ 274 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-----------~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~ 274 (498)
..++..-|+-++. .|+|.+|...|+.|+.+.+... +++......+.|+..|+...|+|
T Consensus 178 v~~l~q~GN~lfk----~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~------- 246 (329)
T KOG0545|consen 178 VPVLHQEGNRLFK----LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY------- 246 (329)
T ss_pred hHHHHHhhhhhhh----hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH-------
Confidence 3567778888888 9999999999999999888764 23333456689999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH-HHHHH
Q 010864 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS-VYSSA 353 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~-~~~~~ 353 (498)
-+++++....|..+|++..+++..|.++...=+ ..+|...|.++++++|... ....-
T Consensus 247 ---yevleh~seiL~~~~~nvKA~frRakAhaa~Wn-------------------~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 247 ---YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN-------------------EAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred ---HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC-------------------HHHHHHHHHHHHhcChhhHHHHHHH
Confidence 999999999999999999999999998876655 5788899999999999876 44455
Q ss_pred HHHHH
Q 010864 354 LRLVR 358 (498)
Q Consensus 354 l~~~~ 358 (498)
++++.
T Consensus 305 lr~le 309 (329)
T KOG0545|consen 305 LRLLE 309 (329)
T ss_pred HHHHH
Confidence 55443
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.4e-05 Score=55.37 Aligned_cols=44 Identities=25% Similarity=0.175 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (498)
Q Consensus 251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~ 304 (498)
+.++..+|.+|..+|++ ++|+..|+++++.+|+++.+|..||.+
T Consensus 1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 35789999999999999 999999999999999999999999863
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.97 E-value=1.6e-05 Score=55.05 Aligned_cols=43 Identities=21% Similarity=0.104 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
+++|+.+|.+|..+|+ +++|++.|+++++.+|++..+|..||.
T Consensus 1 p~~~~~la~~~~~~G~--------------~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQ--------------PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4689999999999999 999999999999999999999999885
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.00025 Score=67.15 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=115.3
Q ss_pred hHHhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH----hCC--CC
Q 010864 133 GRSRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR----LCP--TL 205 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~----l~p--~~ 205 (498)
++...|+|.-....+.+.++.+ |.++.....||.+-.+.|+ .+.|..+|++.-+ ++- ..
T Consensus 186 ~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD--------------~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 186 CLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD--------------IKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHHHhhhhccchh
Confidence 3455789999999999999998 7788899999999999999 9999988884433 332 23
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~ 285 (498)
...+.|.+.++.- .+++.+|. ..|.+.+..||.++.+.||.+.|+..+|+. ..|++..+
T Consensus 252 ~~V~~n~a~i~lg----~nn~a~a~-------r~~~~i~~~D~~~~~a~NnKALcllYlg~l----------~DAiK~~e 310 (366)
T KOG2796|consen 252 IMVLMNSAFLHLG----QNNFAEAH-------RFFTEILRMDPRNAVANNNKALCLLYLGKL----------KDALKQLE 310 (366)
T ss_pred HHHHhhhhhheec----ccchHHHH-------HHHhhccccCCCchhhhchHHHHHHHHHHH----------HHHHHHHH
Confidence 4567788888877 88888888 799999999999999999999999999999 99999999
Q ss_pred HHHHhcCCCH---HHHHHHHHHH
Q 010864 286 AAIQLQFDFH---RAIYNLGTVL 305 (498)
Q Consensus 286 ~Al~l~P~~~---~a~~~Lg~~~ 305 (498)
.++++.|... ...+||...|
T Consensus 311 ~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 311 AMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HHhccCCccchhhhHHHHHHHHH
Confidence 9999999743 4556666554
No 194
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.95 E-value=1e-05 Score=82.61 Aligned_cols=107 Identities=24% Similarity=0.228 Sum_probs=97.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWA 213 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg 213 (498)
....+.|+.|+..|.+||+++|+.+..+.+++.++...+. |..|+..+.+|++++|....+|+..|
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~--------------~~~Al~Da~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVES--------------FGGALHDALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeech--------------hhhHHHHHHhhhhcCchhhheeeecc
Confidence 3456899999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
.+.+. ++++.+|. ..|++...+.|+.+.+...+-.+-....
T Consensus 80 ~a~m~----l~~~~~A~-------~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 80 TAVMA----LGEFKKAL-------LDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHh----HHHHHHHH-------HHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999 88888888 7999999999999999888887755433
No 195
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.95 E-value=7e-06 Score=53.46 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 239 NYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
+|++||+++|+++.+|++||.+|...|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 47899999999999999999999999999
No 196
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.93 E-value=9e-06 Score=67.98 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=62.4
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-----CCCeeeEeecC
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-----PGAGLCIETIH 457 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~ 457 (498)
...|+++||+|+...|..+-..... .......|+|..+.+++++.+-.-+ ....|.|.|..
T Consensus 18 ~~nwKkRwFvL~~~~L~Yyk~~~~~--------------~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~ 83 (106)
T cd01238 18 PLNYKERLFVLTKSKLSYYEGDFEK--------------RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE 83 (106)
T ss_pred CCCceeEEEEEcCCEEEEECCCccc--------------ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC
Confidence 3489999999987777665432221 1124557899999888877665433 46778888766
Q ss_pred CceeeeecChhhhhhHHHHHHHH
Q 010864 458 GPVFLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~a~~~~ 480 (498)
...|+.|+|.++.+.|++||+.|
T Consensus 84 r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 84 GTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CeEEEEcCCHHHHHHHHHHHHhC
Confidence 66799999999999999999865
No 197
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.92 E-value=2e-05 Score=80.46 Aligned_cols=106 Identities=20% Similarity=0.152 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
..|+.|+..|.+|++++|+++..+-+.+.++.+ .+.+..|+ ..+.+|++++|.+..+|+..|.+...++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK----~e~~~~Al-------~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLK----VESFGGAL-------HDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhhee----echhhhHH-------HHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 349999999999999999999999999999999 99999998 7999999999999999999999999999
Q ss_pred CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhH
Q 010864 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDT 312 (498)
Q Consensus 266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~ 312 (498)
++ .+|...|++...+.|+++.+...+-.|-....+..
T Consensus 87 ~~----------~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 87 EF----------KKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HH----------HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999888888766555433
No 198
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.89 E-value=1.2e-05 Score=52.32 Aligned_cols=34 Identities=38% Similarity=0.461 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHH
Q 010864 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK 193 (498)
Q Consensus 146 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~ 193 (498)
+|+++|+++|+++++|+++|.+|...|+ +++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~--------------~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD--------------YEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC--------------HHhhcC
Confidence 4899999999999999999999999999 998863
No 199
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0004 Score=68.37 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 274 QTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 274 ~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
.-++++||+.|++.+.-+|+.-....+++.||+++.- |.-+.+.+.--+.--|+.+...
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY-------------------ydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY-------------------YDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch-------------------hhhHHHHHHHHHHhCCCcHHHH
Confidence 4567999999999999999999999999999999875 4455555555556667666433
No 200
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0021 Score=61.29 Aligned_cols=141 Identities=16% Similarity=0.065 Sum_probs=115.1
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNW 212 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~l 212 (498)
.+...+++++|.....+. .+-++...--.++.++.+ ++-|....+++..++-+ ..+..|
T Consensus 117 i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------------~d~A~~~lk~mq~ided--~tLtQL 175 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------------FDLAEKELKKMQQIDED--ATLTQL 175 (299)
T ss_pred HhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHccchH--HHHHHH
Confidence 355678888888877763 344666666677888888 99999999999887654 456668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P 292 (498)
+.++.+.+...+++.+|. -.|+..-+.-|-.+..++..+.+...+|+| ++|...++.|+..++
T Consensus 176 A~awv~la~ggek~qdAf-------yifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 176 AQAWVKLATGGEKIQDAF-------YIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDA 238 (299)
T ss_pred HHHHHHHhccchhhhhHH-------HHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccC
Confidence 888877554455666666 788888887788999999999999999999 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcchh
Q 010864 293 DFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 293 ~~~~a~~~Lg~~~~~~g~~ 311 (498)
++++.+.|+-.+-..+|++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKD 257 (299)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999974
No 201
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.74 E-value=0.00014 Score=71.25 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=80.9
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
...|.++.|++.|..+|.++|..+..|..++.++..+++ ...||..|..|++++|+.+.-|-..|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~k--------------p~~airD~d~A~ein~Dsa~~ykfrg~ 190 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKK--------------PNAAIRDCDFAIEINPDSAKGYKFRGY 190 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccC--------------CchhhhhhhhhhccCcccccccchhhH
Confidence 347889999999999999999999999999999999999 999999999999999999998888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P 248 (498)
+... +|.+.+|. +.++.+++++-
T Consensus 191 A~rl----lg~~e~aa-------~dl~~a~kld~ 213 (377)
T KOG1308|consen 191 AERL----LGNWEEAA-------HDLALACKLDY 213 (377)
T ss_pred HHHH----hhchHHHH-------HHHHHHHhccc
Confidence 8887 99999988 67787777654
No 202
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0037 Score=58.52 Aligned_cols=184 Identities=14% Similarity=0.121 Sum_probs=121.0
Q ss_pred hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNP------EDYDALYNWALVLQESADNVSLDSTSPSKDA 186 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~ 186 (498)
++.+++|.+++.++.+. +...+++..|=..|.++..+.- +-+..|..-+.+|..- +
T Consensus 27 ~~k~eeAadl~~~Aan~----yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~------------- 88 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANM----YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-D------------- 88 (288)
T ss_pred CcchHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-C-------------
Confidence 46899999999998887 6667888889899988866531 1244556666666544 6
Q ss_pred hHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010864 187 LLEEACKKYDEATRLCPTLH------DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLA 260 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~------~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~ 260 (498)
..+|+.++++++++..+.. .-+..+|.+|.. .+.+++.|+..|++|-.+|..-- .+..--.++.-.+..
T Consensus 89 -~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs---dl~d~ekaI~~YE~Aae~yk~ee-s~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 89 -PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES---DLQDFEKAIAHYEQAAEYYKGEE-SVSSANKCLLKVAQY 163 (288)
T ss_pred -hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHHHHcchh-hhhhHHHHHHHHHHH
Confidence 9999999999999855432 345577777765 13677777766666666664211 111112334444444
Q ss_pred HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH-------HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHH
Q 010864 261 LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA-------IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQS 333 (498)
Q Consensus 261 l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a-------~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A 333 (498)
-..+++| .+||..|++..+..-++.-. ++.-|.|++..++ .-.+
T Consensus 164 aa~leqY----------~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D-------------------~v~a 214 (288)
T KOG1586|consen 164 AAQLEQY----------SKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD-------------------EVNA 214 (288)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc-------------------HHHH
Confidence 5566777 99999999999876666543 3344666666554 3344
Q ss_pred HHHHHHHHhcCCCHH
Q 010864 334 AIYIAAAHALKPSYS 348 (498)
Q Consensus 334 ~~~~~~Al~l~p~~~ 348 (498)
...+++-.+++|...
T Consensus 215 ~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 215 QRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHhcCCccc
Confidence 455566677888876
No 203
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.73 E-value=0.0014 Score=67.72 Aligned_cols=110 Identities=25% Similarity=0.156 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------------------
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------------------ 249 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~------------------ 249 (498)
.++-++.-++||+++|+.+.+|..|+.-. .....+|+++|++|++.-+..+..+..
T Consensus 184 p~aRIkaA~eALei~pdCAdAYILLAEEe------A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 184 PQARIKAAKEALEINPDCADAYILLAEEE------ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccccc------ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 88899999999999999999999987644 446789999999998887777754320
Q ss_pred CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcchhHH
Q 010864 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD--FHRAIYNLGTVLYGLAEDTL 313 (498)
Q Consensus 250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~--~~~a~~~Lg~~~~~~g~~~~ 313 (498)
...+...||.+.+++|+. ++|++.|+..++..|. +..+++||-.+|..++....
T Consensus 258 ~~y~KrRLAmCarklGr~----------~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRL----------REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred hhhhHHHHHHHHHHhCCh----------HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence 145567899999999999 9999999999998775 56799999999999997544
No 204
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00029 Score=66.07 Aligned_cols=106 Identities=14% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPT----------LHDAFYNWAIAISDR 219 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~----------~~~a~~~lg~~~~~~ 219 (498)
..++...|+-++.+|+ |++|...|+.|+.. .|. ....+.|.+.|+..
T Consensus 178 v~~l~q~GN~lfk~~~--------------ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~- 242 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGR--------------YKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK- 242 (329)
T ss_pred hHHHHHhhhhhhhhcc--------------HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-
Confidence 4567888999999999 99999999999865 343 34577899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010864 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (498)
Q Consensus 220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~ 298 (498)
.|+|-+++ ..+...|..+|.|..+++..|.+...-=+. ++|...|.++|+++|.-..+.
T Consensus 243 ---~~e~yevl-------eh~seiL~~~~~nvKA~frRakAhaa~Wn~----------~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 243 ---KEEYYEVL-------EHCSEILRHHPGNVKAYFRRAKAHAAVWNE----------AEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred ---HHHHHHHH-------HHHHHHHhcCCchHHHHHHHHHHHHhhcCH----------HHHHHHHHHHHhcChhhHHHH
Confidence 99999998 699999999999999999999998877777 999999999999999865443
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0013 Score=63.44 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=99.3
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHH---------------
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKY--------------- 195 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~--------------- 195 (498)
+.+++...+|..|..+|++.-.+.|....-.+..+..+++.+. +..|+...
T Consensus 51 gyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i--------------~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 51 GYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI--------------YADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc--------------cHHHHHHHHHhcCCHHHHHHHHH
Confidence 3467788999999999999999999988777777777777766 33333322
Q ss_pred -HHHHH--------------hCC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864 196 -DEATR--------------LCP--TLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (498)
Q Consensus 196 -~~Al~--------------l~p--~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg 258 (498)
+.|+. .-| +.++..+|.|.++.+ .|++++|+ +-|+.|++...-++-.-+|++
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk----egqyEaAv-------qkFqaAlqvsGyqpllAYniA 185 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK----EGQYEAAV-------QKFQAALQVSGYQPLLAYNLA 185 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeec----cccHHHHH-------HHHHHHHhhcCCCchhHHHHH
Confidence 22222 234 567889999999999 99999999 688888988888889999999
Q ss_pred HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.+.++.|++ +.|+++..+.++.
T Consensus 186 LaHy~~~qy----------asALk~iSEIieR 207 (459)
T KOG4340|consen 186 LAHYSSRQY----------ASALKHISEIIER 207 (459)
T ss_pred HHHHhhhhH----------HHHHHHHHHHHHh
Confidence 999999999 9999988877764
No 206
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.67 E-value=6.6e-05 Score=48.61 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
+.+|+++|.++..+|++ ++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence 46899999999999999 99999999999999974
No 207
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.66 E-value=8.2e-05 Score=48.16 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
+.+|+++|.+|..+|+ +++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGD--------------YEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCC--------------chHHHHHHHHHHHHCcCC
Confidence 4789999999999999 999999999999999974
No 208
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.65 E-value=4.2e-05 Score=62.76 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=65.4
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV 463 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 463 (498)
..|.++||+|+...|...-... ......|||.+|..++.+.+.+......|.|.|.....|+.
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~-----------------~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~ 81 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQ-----------------CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQ 81 (98)
T ss_pred cCCceeEEEECCCEEEEECCCC-----------------CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEE
Confidence 5899999999987776643211 23467899999999998888776677899999888888999
Q ss_pred ecChhhhhhHHHHHHH
Q 010864 464 ADSWEALDGWLDAIRL 479 (498)
Q Consensus 464 ~~~~~~~~~~~~a~~~ 479 (498)
|+|..+.+.|.+||+=
T Consensus 82 a~s~~E~~~Wi~al~k 97 (98)
T cd01244 82 FEAPVEATDWLNALEK 97 (98)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999973
No 209
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.64 E-value=0.0022 Score=53.55 Aligned_cols=91 Identities=21% Similarity=0.213 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH--
Q 010864 186 ALLEEACKKYDEATRLCPT------------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP-- 251 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~------------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~-- 251 (498)
+.|++|...|++|+.+..+ ++-+|-.|+.++.. +|+|++++..-+.|+.+|++-=+++.+..
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~----Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG----LGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 4599999999999998433 24577888889999 99999999999999999999999998765
Q ss_pred --HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 252 --QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 252 --~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.+.++.+.++..+|+. ++|+..|+.+-+.
T Consensus 99 WIaaVfsra~Al~~~Gr~----------~eA~~~fr~agEM 129 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRK----------EEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHHH
Confidence 4557899999999999 9999999998764
No 210
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.62 E-value=6.7e-05 Score=62.18 Aligned_cols=96 Identities=23% Similarity=0.375 Sum_probs=66.5
Q ss_pred hccccCCCCCCCC----CCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC
Q 010864 368 AGYLTAPPAGIPV----APHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL 443 (498)
Q Consensus 368 ~~~~~~~~~~~~~----~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (498)
.|||..+|++... --...|+++||+|.+.++..+-...+.. ..+...|+|....+|..+.+.
T Consensus 2 ~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--------------~~p~G~IdL~~~~~V~~~~~~ 67 (104)
T cd01236 2 CGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--------------TLPQGTIDMNQCTDVVDAEAR 67 (104)
T ss_pred cceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--------------cccceEEEccceEEEeecccc
Confidence 4677766666542 3467899999999865554442211100 122346888888888766654
Q ss_pred CCCCCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010864 444 TLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIR 478 (498)
Q Consensus 444 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 478 (498)
.- .+++|+|.|..-..||.|++.++.++|..+|.
T Consensus 68 ~~-~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 68 TG-QKFSICILTPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cC-CccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence 32 46899999877667999999999999999985
No 211
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0014 Score=64.11 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=75.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPED----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~ 209 (498)
+++.++|..|+.+|.+.|+....+ +..|.|++.+.+.+|+ |..|+..+.+|+.++|.+..++
T Consensus 91 ~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N--------------yRs~l~Dcs~al~~~P~h~Ka~ 156 (390)
T KOG0551|consen 91 YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN--------------YRSALNDCSAALKLKPTHLKAY 156 (390)
T ss_pred HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHhcCcchhhhh
Confidence 788999999999999999987554 4568999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQ 235 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~ 235 (498)
+.-+.|+.. +.++++|....+.
T Consensus 157 ~R~Akc~~e----Le~~~~a~nw~ee 178 (390)
T KOG0551|consen 157 IRGAKCLLE----LERFAEAVNWCEE 178 (390)
T ss_pred hhhhHHHHH----HHHHHHHHHHHhh
Confidence 999999999 9998888854433
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.60 E-value=0.00015 Score=46.71 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
+.+|+.+|.+|+.+|+ +++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGN--------------YEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHHHCcCC
Confidence 5789999999999999 999999999999999985
No 213
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00063 Score=69.50 Aligned_cols=193 Identities=16% Similarity=0.049 Sum_probs=138.5
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHH-HhCCC--------CH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT-RLCPT--------LH 206 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al-~l~p~--------~~ 206 (498)
...++.-+..-.+.+..+..+.+.+++..+..++-.|+ |.+|.+.+...- .-.|. ..
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------------~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------------HPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------------hHHHHHHHHhcccccccCccccchhhhh
Confidence 34455555555566666667888999999999999999 999988765431 12222 22
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C---------CCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W---------NSPQALNNWGLALQELSAIVPAREKQT 275 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P---------~~~~a~~~lg~~l~~~g~~~~a~~~~~ 275 (498)
.+|+|||.++.. +|.|.-+..+|.+|+..+..-+... | ..-..++|.|..|...|+.
T Consensus 284 if~NNlGcIh~~----~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP-------- 351 (696)
T KOG2471|consen 284 IFNNNLGCIHYQ----LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP-------- 351 (696)
T ss_pred eeecCcceEeee----hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc--------
Confidence 457899999999 9999999988888886554444333 2 3567899999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccC---------CC---------------------CCCCCC
Q 010864 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGG---------TV---------------------NPREVS 325 (498)
Q Consensus 276 ~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~---------~~---------------------~~~~~~ 325 (498)
..|.++|.+++..-..++..|..|+.|+....+...-... .. .....-
T Consensus 352 --l~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~ 429 (696)
T KOG2471|consen 352 --LLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQL 429 (696)
T ss_pred --HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCC
Confidence 9999999999999999999999999998765432111100 00 011122
Q ss_pred hhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 326 PNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (498)
Q Consensus 326 ~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~ 356 (498)
|.-..+-|..|+..++-+-|....+...+..
T Consensus 430 p~~slefA~vCLrnal~Ll~e~q~~~~~~~~ 460 (696)
T KOG2471|consen 430 PKLSLEFARVCLRNALYLLNEKQDLGSILSV 460 (696)
T ss_pred CccccHHHHHHHHhhhhcCchhhcchhhhhh
Confidence 3335678899999999998877665555444
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.57 E-value=0.00015 Score=46.73 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
+.+|+++|.++..+|++ ++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence 46899999999999999 99999999999999985
No 215
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0006 Score=66.67 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---PT-LHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~---p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
+.-|..-|+-|+...+ |..|+.+|.++|+.. |+ ++..|.|.+.+... .|+|..++
T Consensus 81 Aen~KeeGN~~fK~Kr--------------yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~----l~NyRs~l--- 139 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKR--------------YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY----LGNYRSAL--- 139 (390)
T ss_pred HHHHHHHhHHHHHhhh--------------HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH----HHHHHHHH---
Confidence 3445567888999998 999999999999984 43 56789999999988 77777766
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 234 KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
..+.+++.++|.+..+++.=+.|+.++.++ ++|..+++..+.++-+
T Consensus 140 ----~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~----------~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 140 ----NDCSAALKLKPTHLKAYIRGAKCLLELERF----------AEAVNWCEEGLQIDDE 185 (390)
T ss_pred ----HHHHHHHhcCcchhhhhhhhhHHHHHHHHH----------HHHHHHHhhhhhhhHH
Confidence 799999999999999999999999999999 8888888887776544
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.015 Score=59.18 Aligned_cols=188 Identities=14% Similarity=0.025 Sum_probs=122.1
Q ss_pred HHhhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCCC
Q 010864 134 RSRQRILTFAAKRYANAIER----NPEDYDALYNWALVLQE---SADNVSLDSTSPSKDALLEEACKKYDEATR-LCPTL 205 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~---~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~~ 205 (498)
+....+|+.-+.+.+..-.+ -++.+...+.+|.++.+ .|+ .++|+..+..++. ..+.+
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------------re~Al~il~~~l~~~~~~~ 216 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------------REKALQILLPVLESDENPD 216 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------------HHHHHHHHHHHHhccCCCC
Confidence 34457777777777766555 45667788899999988 666 9999999999554 46678
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHH
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFR 285 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~ 285 (498)
++.+..+|.+|.++....+.-+ .+.+++|+..|+++++++| +...-.|++.++...|...+.... +.+-...+.
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d--~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~e---l~~i~~~l~ 290 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTD--RESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEE---LRKIGVKLS 290 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHH---HHHHHHHHH
Confidence 9999999999988544333222 2348899999999999996 445666777777777764111000 000000111
Q ss_pred HHH-Hh----cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHH---HHHHHHHH
Q 010864 286 AAI-QL----QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSV---YSSALRLV 357 (498)
Q Consensus 286 ~Al-~l----~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~---~~~~l~~~ 357 (498)
..+ +. .-.+-..+-.+..+..-.|+ +..+..+++++++++|.... ....+.++
T Consensus 291 ~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d-------------------~~ka~~a~e~~~~l~~~~W~l~St~~ni~Li 351 (374)
T PF13281_consen 291 SLLGRKGSLEKMQDYWDVATLLEASVLAGD-------------------YEKAIQAAEKAFKLKPPAWELESTLENIKLI 351 (374)
T ss_pred HHHHhhccccccccHHHHHHHHHHHHHcCC-------------------HHHHHHHHHHHhhcCCcchhHHHHHHHHHHH
Confidence 111 11 11223334445566666676 89999999999999988773 33444444
Q ss_pred Hcc
Q 010864 358 RSM 360 (498)
Q Consensus 358 ~~~ 360 (498)
+++
T Consensus 352 ~~~ 354 (374)
T PF13281_consen 352 RHF 354 (374)
T ss_pred HHH
Confidence 444
No 217
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0057 Score=58.19 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=151.9
Q ss_pred hhhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHH
Q 010864 112 LAEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEA 191 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A 191 (498)
.+.++.++++++..++.. ..+-..|+.+-..+|.++|.+..+|..+-.++..++. ++.+=
T Consensus 38 Yte~fr~~m~YfRAI~~~-------~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------------dL~~E 97 (318)
T KOG0530|consen 38 YTEDFRDVMDYFRAIIAK-------NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------------DLNKE 97 (318)
T ss_pred echhHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------------HHHHH
Confidence 457888999999887755 5555789999999999999999999999999988876 48888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK-EAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (498)
Q Consensus 192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~-eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a 270 (498)
++.+.+.++-+|++...|...-.+... .|++. .-+ ...++++..+.+|--+|...-.+++..+.+
T Consensus 98 l~~l~eI~e~npKNYQvWHHRr~ive~----l~d~s~rEL-------ef~~~~l~~DaKNYHaWshRqW~~r~F~~~--- 163 (318)
T KOG0530|consen 98 LEYLDEIIEDNPKNYQVWHHRRVIVEL----LGDPSFREL-------EFTKLMLDDDAKNYHAWSHRQWVLRFFKDY--- 163 (318)
T ss_pred HHHHHHHHHhCccchhHHHHHHHHHHH----hcCcccchH-------HHHHHHHhccccchhhhHHHHHHHHHHhhH---
Confidence 999999999999999999988888877 88777 444 588999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 350 (498)
Q Consensus 271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~ 350 (498)
+.-+.+..+.|+.+-.+-.+|+..=.+..... ........+.-+.|..+.+.+.|+|...
T Consensus 164 -------~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~-------------~~~~~~~le~El~yt~~~I~~vP~NeSa 223 (318)
T KOG0530|consen 164 -------EDELAYADELLEEDIRNNSAWNQRYFVITNTK-------------GVISKAELERELNYTKDKILLVPNNESA 223 (318)
T ss_pred -------HHHHHHHHHHHHHhhhccchhheeeEEEEecc-------------CCccHHHHHHHHHHHHHHHHhCCCCccH
Confidence 99999999999988877777776544433321 1223334566777888899999999843
Q ss_pred H
Q 010864 351 S 351 (498)
Q Consensus 351 ~ 351 (498)
.
T Consensus 224 W 224 (318)
T KOG0530|consen 224 W 224 (318)
T ss_pred H
Confidence 3
No 218
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.027 Score=57.86 Aligned_cols=225 Identities=14% Similarity=0.173 Sum_probs=129.0
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
.++++..|...|++||..+-.+...|...+.+-+.... ...|...+++|+.+-|.--..|+..-.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~--------------vNhARNv~dRAvt~lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQ--------------VNHARNVWDRAVTILPRVDQLWYKYIYM 150 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhh--------------HhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 35666777777777777777777777777777666666 6777777777777777666666665555
Q ss_pred HHHHHHHcCCHHHHHHHH--------------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcch
Q 010864 216 ISDRAKMRGRTKEAEELW--------------------------KQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVP 269 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~--------------------------~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~ 269 (498)
-.. +|+..-|.+.| +.|...|++-+-..| ....|..++..-.+.|+.
T Consensus 151 EE~----LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~-- 223 (677)
T KOG1915|consen 151 EEM----LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNV-- 223 (677)
T ss_pred HHH----hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcH--
Confidence 545 66666666433 224466666666665 355666666666666665
Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcchhHHhccCC-----CC---------------------CC
Q 010864 270 AREKQTIVRTAISKFRAAIQLQFDFH-RAIYNLGTVLYGLAEDTLRTGGT-----VN---------------------PR 322 (498)
Q Consensus 270 a~~~~~~~~~Ai~~~~~Al~l~P~~~-~a~~~Lg~~~~~~g~~~~~~~~~-----~~---------------------~~ 322 (498)
.-|...|++|++.--++. ....-.+.+.+..+.+...++.. ++ +.
T Consensus 224 --------~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 224 --------ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGD 295 (677)
T ss_pred --------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcc
Confidence 777777777776533322 22222333433333222111100 00 00
Q ss_pred CCChhH-HHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHccCCchhhhhccccCCCCCCCCCCchhhhhh
Q 010864 323 EVSPNE-LYSQSAIYIAAAHALKPSYS-VYSSALRLVRSMLPLPYLKAGYLTAPPAGIPVAPHSDWKRS 389 (498)
Q Consensus 323 ~~~~~~-~~~~A~~~~~~Al~l~p~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 389 (498)
....++ ...+..--|+..++-+|-|- .+..-+++..+......++.-|-.+....+|......|+|.
T Consensus 296 ~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 296 KEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRY 364 (677)
T ss_pred hhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHH
Confidence 111111 23444556788888888776 56666666665544455566665554445556666678775
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.48 E-value=0.0037 Score=61.96 Aligned_cols=149 Identities=9% Similarity=0.015 Sum_probs=106.0
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---
Q 010864 134 RSRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--- 205 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--- 205 (498)
+.+..++.+++.+-.-.+.+-... ..++..+|.++..++. |+++++.|++|+++.-++
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~--------------fq~~Lesfe~A~~~A~~~~D~ 158 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSV--------------FQKALESFEKALRYAHNNDDA 158 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHH--------------HHHHHHHHHHHHHHhhccCCc
Confidence 444566666776666666553322 2567778999999998 999999999999984432
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-C---CHHHHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864 206 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-N---SPQALNNWGLALQELSAIVPAREKQTIVR 278 (498)
Q Consensus 206 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P-~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~ 278 (498)
..++..||..+.. +.++++|.-...+|.+.-+ .+.++- + ...+++.++.+|..+|+. -
T Consensus 159 ~LElqvcv~Lgslf~~----l~D~~Kal~f~~kA~~lv~-s~~l~d~~~kyr~~~lyhmaValR~~G~L----------g 223 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQ----LKDYEKALFFPCKAAELVN-SYGLKDWSLKYRAMSLYHMAVALRLLGRL----------G 223 (518)
T ss_pred eeeeehhhhHHHHHHH----HHhhhHHhhhhHhHHHHHH-hcCcCchhHHHHHHHHHHHHHHHHHhccc----------c
Confidence 2467888999988 8888888854444433222 222221 1 245688999999999999 9
Q ss_pred HHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcchh
Q 010864 279 TAISKFRAAIQLQ------FDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 279 ~Ai~~~~~Al~l~------P~~~~a~~~Lg~~~~~~g~~ 311 (498)
.|.++.++|.++. +-+.....-+|.+|...|+.
T Consensus 224 dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 224 DAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 9999999998873 34466777789999998873
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.48 E-value=0.016 Score=55.29 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
-+.-|++-|....+.|+ +++|+..|++....+|.. ..+...++.++.+ .+++++|+
T Consensus 33 p~~~LY~~g~~~L~~gn--------------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk----~~~y~~A~--- 91 (254)
T COG4105 33 PASELYNEGLTELQKGN--------------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK----NGEYDLAL--- 91 (254)
T ss_pred CHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh----cccHHHHH---
Confidence 46778999999999999 999999999999998875 4688999999999 99999999
Q ss_pred HHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH---HHH---------
Q 010864 234 KQATKNYEKAVQLNWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAI--------- 298 (498)
Q Consensus 234 ~~Al~~~~~Al~l~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~--------- 298 (498)
...++-+.+.|++ ..+++..|.++... ++...+.+..-.+|+..|+..|..-|+.. .+.
T Consensus 92 ----~~~drFi~lyP~~~n~dY~~YlkgLs~~~~--i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~ 165 (254)
T COG4105 92 ----AYIDRFIRLYPTHPNADYAYYLKGLSYFFQ--IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA 165 (254)
T ss_pred ----HHHHHHHHhCCCCCChhHHHHHHHHHHhcc--CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 6888888888765 45678888875533 22235556667899999999999988863 111
Q ss_pred -----HHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 299 -----YNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (498)
Q Consensus 299 -----~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~ 358 (498)
..+|..|.+.|. +..|+..++..++--|+-.....+|..+.
T Consensus 166 LA~~Em~IaryY~kr~~-------------------~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ 211 (254)
T COG4105 166 LAGHEMAIARYYLKRGA-------------------YVAAINRFEEVLENYPDTSAVREALARLE 211 (254)
T ss_pred HHHHHHHHHHHHHHhcC-------------------hHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 223455555555 67788888888887777666556655544
No 221
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0078 Score=57.47 Aligned_cols=133 Identities=16% Similarity=0.129 Sum_probs=110.0
Q ss_pred hhhcHHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhh
Q 010864 112 LAEQNNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDA 186 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~ 186 (498)
..+.+++|++......+.. ..++.+..+++-|....++..+++- -..+..||.++..... +.+
T Consensus 120 ~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~----------gge 187 (299)
T KOG3081|consen 120 HDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLAT----------GGE 187 (299)
T ss_pred cCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhc----------cch
Confidence 4578889999888866555 3456788999999999999988753 4566777777766543 112
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
.+..|.-.|+..-...|......+..+.+... +|++++|. ...+.+|..+++++.++.|+-.+-...|+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~----~~~~eeAe-------~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ----LGRYEEAE-------SLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHH----hcCHHHHH-------HHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 38899999999988788888999999999999 99999999 68999999999999999999999999999
Q ss_pred c
Q 010864 267 I 267 (498)
Q Consensus 267 ~ 267 (498)
-
T Consensus 257 d 257 (299)
T KOG3081|consen 257 D 257 (299)
T ss_pred C
Confidence 7
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.39 E-value=0.004 Score=54.88 Aligned_cols=75 Identities=25% Similarity=0.306 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al 237 (498)
..++..++..+...|+ +++|+..+++++.++|.+-.+|..+-.+|.. .|+..+|+..|++..
T Consensus 62 ~~~~~~l~~~~~~~~~--------------~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~----~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGD--------------YEEALRLLQRALALDPYDEEAYRLLMRALAA----QGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----CcCHHHHHHHHHHHH
Confidence 3567778888889999 9999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 010864 238 KNYEKAVQLNWNS 250 (498)
Q Consensus 238 ~~~~~Al~l~P~~ 250 (498)
..+.+-+...|..
T Consensus 124 ~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 124 RRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHS----H
T ss_pred HHHHHHhCcCcCH
Confidence 9999989888863
No 223
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.39 E-value=0.019 Score=56.90 Aligned_cols=180 Identities=23% Similarity=0.161 Sum_probs=121.7
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIA 215 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-~~a~~~lg~~ 215 (498)
..+..+|+..|.. ..+..++.+.+++|..|..-.- -..++.+|..+|.+|....-.. ..+.+++|.+
T Consensus 90 ~~~~~~A~~~~~~--~a~~g~~~a~~~lg~~~~~G~g----------v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~ 157 (292)
T COG0790 90 SRDKTKAADWYRC--AAADGLAEALFNLGLMYANGRG----------VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLA 157 (292)
T ss_pred cccHHHHHHHHHH--HhhcccHHHHHhHHHHHhcCCC----------cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5668899999994 4456789999999999976220 0113999999999998875443 4558999999
Q ss_pred HHHHHHHcCCHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 216 ISDRAKMRGRTKEAEE-LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~-~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
|.. -. ...+.. ...+|+..|.++-... +..+.+++|.+|..-. .-..|+++|+.+|.+|-+...
T Consensus 158 ~~~----g~-~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~------Gv~~d~~~A~~wy~~Aa~~g~-- 222 (292)
T COG0790 158 YLS----GL-QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGL------GVPRDLKKAFRWYKKAAEQGD-- 222 (292)
T ss_pred HHc----Ch-hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCC------CCCcCHHHHHHHHHHHHHCCC--
Confidence 875 32 222221 2346778888888775 8999999998776531 124566999999999999877
Q ss_pred HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 295 HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 295 ~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
..++++++ +++..|.-....... ..........+...+.++....+...
T Consensus 223 ~~a~~~~~-~~~~~g~g~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 223 GAACYNLG-LMYLNGEGVKKAAFL----TAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred HHHHHHHH-HHHhcCCCchhhhhc----ccccCCCHHHHHHHHHHHHHcCChhH
Confidence 89999999 777766311100000 00011125667777777766655544
No 224
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.011 Score=60.54 Aligned_cols=162 Identities=14% Similarity=0.056 Sum_probs=119.5
Q ss_pred hhccHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPE----DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN 211 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~ 211 (498)
...+.+.+.+.|+.+|.+=|. .+..|...|....++.+ +..|.+.+-.|+..+|.+--. ..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~--------------l~~ARkiLG~AIG~cPK~KlF-k~ 442 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN--------------LTGARKILGNAIGKCPKDKLF-KG 442 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc--------------cHHHHHHHHHHhccCCchhHH-HH
Confidence 357888999999999999885 46788888888888888 999999999999999986321 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 212 WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 212 lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
|.. ++-.+..|+++.+.|++-|+..|.+-.+|...|.+-..+|+. +.|...|+-|+...
T Consensus 443 ----YIe-------lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~qp 501 (677)
T KOG1915|consen 443 ----YIE-------LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT----------DRARAIFELAISQP 501 (677)
T ss_pred ----HHH-------HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcCc
Confidence 111 123344455555899999999999999999999999999999 88999998888765
Q ss_pred CCCHHHHHHHHHHH--HHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 292 FDFHRAIYNLGTVL--YGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 292 P~~~~a~~~Lg~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
.-+..-+.-.+.+- ...|+ +..+...|++.|...+...++.+
T Consensus 502 ~ldmpellwkaYIdFEi~~~E-------------------~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 502 ALDMPELLWKAYIDFEIEEGE-------------------FEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred ccccHHHHHHHhhhhhhhcch-------------------HHHHHHHHHHHHHhcccchHHHh
Confidence 43332222222222 22233 67788888888887777665443
No 225
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.29 E-value=0.015 Score=66.43 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=64.4
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--LHDAFYNW 212 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~~~a~~~l 212 (498)
.+.+++++|.++|+..++..-+....|..+|..++.+.+ -+.|...+.+||+.-|. +.......
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne--------------~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE--------------AEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH--------------HHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 334555555555555555555555555555555555555 55555555555555554 44444455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
+.+.++ .|+.+.+. ..|+-.+.-+|.-.+.|+-+...-.+.|.. +-+...|++++.+
T Consensus 1607 AqLEFk----~GDaeRGR-------tlfEgll~ayPKRtDlW~VYid~eik~~~~----------~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1607 AQLEFK----YGDAERGR-------TLFEGLLSAYPKRTDLWSVYIDMEIKHGDI----------KYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHhh----cCCchhhH-------HHHHHHHhhCccchhHHHHHHHHHHccCCH----------HHHHHHHHHHHhc
Confidence 555555 55555555 345555555555555555555555555555 5555555555554
No 226
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.27 E-value=0.0095 Score=65.26 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
+++.+|.....+.++.+|+...+...-|.++.+ +|+.++|. .+++..-...+++..++.-+-.+|..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r----~gk~~ea~-------~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFR----LGKGDEAL-------KLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----hcCchhHH-------HHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 349999999999999999999999999999999 99999999 5666666677889999999999999999
Q ss_pred CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
++ ++|..+|++++...|+ .+..+.+=.+|.+.+.
T Consensus 92 ~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 92 KL----------DEAVHLYERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred hh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 99 9999999999999999 8888888888888776
No 227
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.0061 Score=60.26 Aligned_cols=128 Identities=12% Similarity=0.056 Sum_probs=102.5
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
.+..+.|...|.+|++..+-..++|...|.+-+..++ +.+.|...|+.+++..|.+...|......+
T Consensus 14 ~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-------------d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-------------DPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4558899999999996666678999999999777554 277799999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP---QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~---~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.. .++.+.|. ..|++++..-|... ..|..+...-.+.|+. +.....++++.++-|+
T Consensus 81 ~~----~~d~~~aR-------~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl----------~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 81 IK----LNDINNAR-------ALFERAISSLPKEKQSKKIWKKFIEFESKYGDL----------ESVRKVEKRAEELFPE 139 (280)
T ss_dssp HH----TT-HHHHH-------HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H----------HHHHHHHHHHHHHTTT
T ss_pred HH----hCcHHHHH-------HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhh
Confidence 88 99999998 68888887666544 6788888877888887 9999999999999888
Q ss_pred CHHHH
Q 010864 294 FHRAI 298 (498)
Q Consensus 294 ~~~a~ 298 (498)
+....
T Consensus 140 ~~~~~ 144 (280)
T PF05843_consen 140 DNSLE 144 (280)
T ss_dssp S-HHH
T ss_pred hhHHH
Confidence 54433
No 228
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.24 E-value=0.0083 Score=59.29 Aligned_cols=137 Identities=15% Similarity=0.087 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMR-GRTKEAEELWKQATK 238 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~-g~~~eA~~~~~~Al~ 238 (498)
+|..+.....+.+. .+.|...|.+|++..+....+|...|.+-.. . ++.+.|. +
T Consensus 3 v~i~~m~~~~r~~g--------------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~----~~~d~~~A~-------~ 57 (280)
T PF05843_consen 3 VWIQYMRFMRRTEG--------------IEAARKVFKRARKDKRCTYHVYVAYALMEYY----CNKDPKRAR-------K 57 (280)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH----TCS-HHHHH-------H
T ss_pred HHHHHHHHHHHhCC--------------hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCCHHHHH-------H
Confidence 56677777777777 9999999999996666677888888888555 4 4555488 6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcchhHHhc
Q 010864 239 NYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH---RAIYNLGTVLYGLAEDTLRT 315 (498)
Q Consensus 239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~---~a~~~Lg~~~~~~g~~~~~~ 315 (498)
.|+++++..|.+...|..+...+...|+. +.|...|++++..-|... .+|......-...|+
T Consensus 58 Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd----- 122 (280)
T PF05843_consen 58 IFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD----- 122 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC-----
Confidence 88888888899999999999999999999 999999999999866654 577777777777776
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHH
Q 010864 316 GGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVY 350 (498)
Q Consensus 316 ~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~ 350 (498)
+......++++.++-|++...
T Consensus 123 --------------l~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 123 --------------LESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp --------------HHHHHHHHHHHHHHTTTS-HH
T ss_pred --------------HHHHHHHHHHHHHHhhhhhHH
Confidence 677778888888888885533
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.15 E-value=0.012 Score=58.43 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=103.2
Q ss_pred hhHHhhccHHHHHHHHHHH----HHhCCC--CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 132 EGRSRQRILTFAAKRYANA----IERNPE--DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~a----l~~~P~--~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
....++|.|++++.+--.. .+.+-. .-+++.+++..+....+ +.+++.+..-.+.+-...
T Consensus 51 ~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~--------------f~kt~~y~k~~l~lpgt~ 116 (518)
T KOG1941|consen 51 TAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE--------------FHKTISYCKTCLGLPGTR 116 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHhcCCCCC
Confidence 3456677777776554333 333222 24688899999999988 999999888888873332
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHhcCcchHHhhh
Q 010864 206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQALNNWGLALQELSAIVPAREKQ 274 (498)
Q Consensus 206 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~------~~~a~~~lg~~l~~~g~~~~a~~~~ 274 (498)
..++.-+|.++.. ++.++.+++ .|++|+..--+ ..+++..||..+.++.++
T Consensus 117 ~~~~~gq~~l~~~~Ahlg----ls~fq~~Le-------sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~------- 178 (518)
T KOG1941|consen 117 AGQLGGQVSLSMGNAHLG----LSVFQKALE-------SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY------- 178 (518)
T ss_pred cccccchhhhhHHHHhhh----HHHHHHHHH-------HHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh-------
Confidence 2456667777777 777777775 55655544322 246788999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcch
Q 010864 275 TIVRTAISKFRAAIQLQFDF----------HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~----------~~a~~~Lg~~~~~~g~ 310 (498)
++|..+..+|.++-... ..++|.++.+|..+|+
T Consensus 179 ---~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~ 221 (518)
T KOG1941|consen 179 ---EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR 221 (518)
T ss_pred ---hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999984322 4578889999999886
No 230
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.12 E-value=0.015 Score=63.69 Aligned_cols=106 Identities=20% Similarity=0.079 Sum_probs=96.7
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
..+++.+|.....+.++..|+...+...-|.++.++|+ +++|..+++..-...+++-..+--+-.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk--------------~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGK--------------GDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcC--------------chhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 46789999999999999999999999999999999999 9999987777777788888899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
|.+ ++++++|. ..|+++++.+|+ ...+..|=.+|.+.+.|
T Consensus 87 y~d----~~~~d~~~-------~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 87 YRD----LGKLDEAV-------HLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHH----HhhhhHHH-------HHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 999 99999999 799999999999 88888888999988887
No 231
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.014 Score=63.46 Aligned_cols=104 Identities=17% Similarity=0.264 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEA----------TRLCPT----------LHDAFYNWAIAIS 217 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~A----------l~l~p~----------~~~a~~~lg~~~~ 217 (498)
-..|++.+.-+...++ .+.|+++|+++ |.-+|. +...|..||.-+.
T Consensus 858 r~Tyy~yA~~Lear~D--------------i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE 923 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRD--------------IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE 923 (1416)
T ss_pred hhhHHHHHHHHHhhcc--------------HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh
Confidence 3568899999988888 99999999875 222333 4567788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHH--------------HhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864 218 DRAKMRGRTKEAEELWKQATKNYEKA--------------VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (498)
Q Consensus 218 ~~~~~~g~~~eA~~~~~~Al~~~~~A--------------l~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~ 283 (498)
. .|+.+.|+..|..|..+|... +.....+..+.+.||.-|...|++ .+|+.+
T Consensus 924 S----~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v----------~~Av~F 989 (1416)
T KOG3617|consen 924 S----VGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV----------VKAVKF 989 (1416)
T ss_pred c----ccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH----------HHHHHH
Confidence 9 999999999998888777532 333456778888999999888888 999988
Q ss_pred HHHHHH
Q 010864 284 FRAAIQ 289 (498)
Q Consensus 284 ~~~Al~ 289 (498)
|.+|-.
T Consensus 990 fTrAqa 995 (1416)
T KOG3617|consen 990 FTRAQA 995 (1416)
T ss_pred HHHHHH
Confidence 877654
No 232
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.10 E-value=0.031 Score=56.66 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=117.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHcCCHHHH
Q 010864 154 NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIAISDRAKMRGRTKEA 229 (498)
Q Consensus 154 ~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~~a~~~lg~~~~~~~~~~g~~~eA 229 (498)
.......|...+.+....|. ++.|...+.++...++. .+.+.+..+..+.. .|+..+|
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~--------------~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~----~g~~~~A 203 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGN--------------FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA----QGEQEEA 203 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCC--------------cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH----cCCHHHH
Confidence 34556788899999999999 99999999999987632 45667777777777 9999999
Q ss_pred HHHHHHHHH-HHHHHHhcC-----------------C--CCHHHHHHHHHHHHHhcCcchHHhhh------hhHHHHHHH
Q 010864 230 EELWKQATK-NYEKAVQLN-----------------W--NSPQALNNWGLALQELSAIVPAREKQ------TIVRTAISK 283 (498)
Q Consensus 230 ~~~~~~Al~-~~~~Al~l~-----------------P--~~~~a~~~lg~~l~~~g~~~~a~~~~------~~~~~Ai~~ 283 (498)
+...+..+. .+.+-+... + ....-....+.++..+|++ .... +..++++..
T Consensus 204 i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w---~~~~~~~~~~~~~~~~~~~ 280 (352)
T PF02259_consen 204 IQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW---LDELYSKLSSESSDEILKY 280 (352)
T ss_pred HHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH---HHhhccccccccHHHHHHH
Confidence 987776666 333221100 0 0222233445555555555 3333 566999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 284 FRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 284 ~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
|+++++++|+...+|+.+|..+...-+.......... .....+....|+.+|-+++.+.+.
T Consensus 281 ~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 281 YKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESS--QEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccc--hhHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999998877642211110000 013345678899999999999988
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.012 Score=57.76 Aligned_cols=142 Identities=13% Similarity=-0.022 Sum_probs=107.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCC---HHHH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTL---HDAF 209 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~---~~a~ 209 (498)
....|++-+|...+++.|.-.|.+--++..--.+++..|+ ...-...+++.+-. +++. ...+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~--------------~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGN--------------QIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccc--------------hhhhhhHHHHhccccCCCCcHHHHHH
Confidence 3446888888899999999999998888888888888888 78888888888776 7765 4455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
-.++..+.. .|-|++|+ +.-++++++|+.+.-+...++.++...|++ +++.++..+.-.
T Consensus 179 GmyaFgL~E----~g~y~dAE-------k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~----------Keg~eFM~~ted 237 (491)
T KOG2610|consen 179 GMYAFGLEE----CGIYDDAE-------KQADRALQINRFDCWASHAKAHVLEMNGRH----------KEGKEFMYKTED 237 (491)
T ss_pred HHHHhhHHH----hccchhHH-------HHHHhhccCCCcchHHHHHHHHHHHhcchh----------hhHHHHHHhccc
Confidence 556666777 89999988 688999999999999999999999999999 888887766533
Q ss_pred hcCCC----HHHHHHHHHHHHHcch
Q 010864 290 LQFDF----HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 290 l~P~~----~~a~~~Lg~~~~~~g~ 310 (498)
.-... ..-|...+.++..-++
T Consensus 238 ~Wr~s~mlasHNyWH~Al~~iE~ae 262 (491)
T KOG2610|consen 238 DWRQSWMLASHNYWHTALFHIEGAE 262 (491)
T ss_pred chhhhhHHHhhhhHHHHHhhhcccc
Confidence 22211 1223445555555555
No 234
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.06 E-value=0.047 Score=62.63 Aligned_cols=157 Identities=13% Similarity=0.035 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Q 010864 141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWAIAISDR 219 (498)
Q Consensus 141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~~~a~~~lg~~~~~~ 219 (498)
.+..+-|++.+.-+|+..-.|.+.-..+.++++ .++|.+..++||.- |+.-.+=-.|+-.+|.++
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsE--------------iekAR~iaerAL~tIN~REeeEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSE--------------IEKARKIAERALKTINFREEEEKLNIWIAYLNL 1506 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhh--------------hHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhH
Confidence 345678999999999999999999999999999 99999999999974 665544444444444442
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 220 AKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
--+-|.-+.-. +.|++|.+..- -...+..|.-+|..-+++ ++|.++|+..++.--+...+|.
T Consensus 1507 En~yG~eesl~-------kVFeRAcqycd-~~~V~~~L~~iy~k~ek~----------~~A~ell~~m~KKF~q~~~vW~ 1568 (1710)
T KOG1070|consen 1507 ENAYGTEESLK-------KVFERACQYCD-AYTVHLKLLGIYEKSEKN----------DEADELLRLMLKKFGQTRKVWI 1568 (1710)
T ss_pred HHhhCcHHHHH-------HHHHHHHHhcc-hHHHHHHHHHHHHHhhcc----------hhHHHHHHHHHHHhcchhhHHH
Confidence 22234333333 56666665432 346778888899999999 9999999999998888899999
Q ss_pred HHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 300 NLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 300 ~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
.+|..++++.+ -++|...+.+|++.-|...
T Consensus 1569 ~y~~fLl~~ne-------------------~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1569 MYADFLLRQNE-------------------AEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcccH-------------------HHHHHHHHHHHHhhcchhh
Confidence 99999999987 5777888899999988844
No 235
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.011 Score=57.44 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=91.4
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHH--HHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHD--AFY 210 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~--a~~ 210 (498)
.....|++.+|...|..++..+|++.++...++.+|...|+ .+.|...+.. .|.... .+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~--------------~e~A~~iL~~----lP~~~~~~~~~ 204 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGD--------------VEAAQAILAA----LPLQAQDKAAH 204 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCC--------------hHHHHHHHHh----CcccchhhHHH
Confidence 34567999999999999999999999999999999999999 8888776654 343222 111
Q ss_pred H-HH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864 211 N-WA--IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (498)
Q Consensus 211 ~-lg--~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A 287 (498)
. .+ ..+.. .....+.. .+++.+..||++.++-+.++..|...|+. ++|.+.+-..
T Consensus 205 ~l~a~i~ll~q----aa~~~~~~--------~l~~~~aadPdd~~aa~~lA~~~~~~g~~----------e~Ale~Ll~~ 262 (304)
T COG3118 205 GLQAQIELLEQ----AAATPEIQ--------DLQRRLAADPDDVEAALALADQLHLVGRN----------EAALEHLLAL 262 (304)
T ss_pred HHHHHHHHHHH----HhcCCCHH--------HHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHH
Confidence 1 11 11222 33333333 56778889999999999999999999999 9999998888
Q ss_pred HHhcCC
Q 010864 288 IQLQFD 293 (498)
Q Consensus 288 l~l~P~ 293 (498)
++.+-.
T Consensus 263 l~~d~~ 268 (304)
T COG3118 263 LRRDRG 268 (304)
T ss_pred HHhccc
Confidence 877543
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.055 Score=51.19 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=93.6
Q ss_pred hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDAL 187 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~ 187 (498)
.+++.|...|.++... +...++|++|..++.+|++-..++ +.++-..|.+..++..
T Consensus 25 ad~dgaas~yekAAva----fRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k-------------- 86 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVA----FRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK-------------- 86 (308)
T ss_pred CCchhhHHHHHHHHHH----HHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--------------
Confidence 4556666777776655 556788999999999998654333 3455667777778887
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 188 LEEACKKYDEATRL-----CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 188 ~~~A~~~~~~Al~l-----~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
+.++...|++|..+ .|+-+..-...+--... .-+.++|+++|++++..++.-=.. -.-.+.+...+.+|.
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le----nv~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lV 161 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE----NVKPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLV 161 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhh
Confidence 99999999999887 45444333333333334 678899998777777655421100 012344556667788
Q ss_pred HhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 263 ELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 263 ~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
+..++ .+|-..|.+-..
T Consensus 162 rl~kf----------~Eaa~a~lKe~~ 178 (308)
T KOG1585|consen 162 RLEKF----------TEAATAFLKEGV 178 (308)
T ss_pred hhHHh----------hHHHHHHHHhhh
Confidence 88888 777777766443
No 237
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.05 E-value=0.012 Score=48.79 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=87.4
Q ss_pred HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 164 WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 164 lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
++..++..|+ +-+|++..+..+..++++. ..+..-|.++..++....+.+--...+..++.+|
T Consensus 2 ~A~~~~~rGn--------------hiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~ 67 (111)
T PF04781_consen 2 KAKDYFARGN--------------HIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECF 67 (111)
T ss_pred hHHHHHHccC--------------HHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHH
Confidence 4566778888 9999999999999998876 5677789999988888888888888889999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 241 EKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 241 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.++..+.|..+..++.+|.-+.-.-.| ++++...+++|.+
T Consensus 68 s~a~~Lsp~~A~~L~~la~~l~s~~~Y----------kk~v~kak~~Lsv 107 (111)
T PF04781_consen 68 SRAVELSPDSAHSLFELASQLGSVKYY----------KKAVKKAKRGLSV 107 (111)
T ss_pred HHHhccChhHHHHHHHHHHHhhhHHHH----------HHHHHHHHHHhcc
Confidence 999999999998888888776655566 8888888888765
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.03 E-value=0.016 Score=51.02 Aligned_cols=82 Identities=23% Similarity=0.142 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Q 010864 188 LEEACKKYDEATRLCPTL----------------------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ 245 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~----------------------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~ 245 (498)
.+.++..+++++.+-... ..+...++..+.. .|++++|+ ..+++++.
T Consensus 22 ~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~----~~~~~~a~-------~~~~~~l~ 90 (146)
T PF03704_consen 22 PEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE----AGDYEEAL-------RLLQRALA 90 (146)
T ss_dssp HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHH-------HHHHHHHh
Confidence 778888888888772211 1344445555555 88888888 79999999
Q ss_pred cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 246 LNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 246 l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.+|.+..++..+-.+|...|+. .+|+..|++..+.
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRRR 125 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999887543
No 239
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.00 E-value=0.04 Score=58.60 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=104.7
Q ss_pred HHhhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH---
Q 010864 134 RSRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH--- 206 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~--- 206 (498)
+...|+++.|...|++++..+= +.+..|.++|..-....+ ++.|.+..++|+.+-.+..
T Consensus 397 Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~--------------~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 397 YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHEN--------------FEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhcCCCchhhhh
Confidence 5568999999999999998763 236788898888888777 9999999999987621111
Q ss_pred -----HH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHH
Q 010864 207 -----DA---FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVR 278 (498)
Q Consensus 207 -----~a---~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~ 278 (498)
.+ .++--.+++. --+++|+..-|+...+.|++.+.+.--.++.-.|.|..+.+..-+ +
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~----y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------e 528 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSM----YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------E 528 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHH----HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------H
Confidence 11 1111222333 556777777788888999999999999999999999999988888 8
Q ss_pred HHHHHHHHHHHh--cCCCHHHHHHH
Q 010864 279 TAISKFRAAIQL--QFDFHRAIYNL 301 (498)
Q Consensus 279 ~Ai~~~~~Al~l--~P~~~~a~~~L 301 (498)
+|.+.|++.|.+ .|+-.++|+..
T Consensus 529 esFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 529 ESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHHHHHHcCCccCCCccHHHHHHHH
Confidence 888888887776 35555666543
No 240
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.98 E-value=0.0014 Score=42.23 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
.+|+.+|.+|..+|++ ++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 5799999999999999 99999999999999964
No 241
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.94 E-value=0.024 Score=61.61 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHhcCCC----------CHHHHHHHHHHHHHhcCcchHHh
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQA----TKNYEKAVQLNWN----------SPQALNNWGLALQELSAIVPARE 272 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A----l~~~~~Al~l~P~----------~~~a~~~lg~~l~~~g~~~~a~~ 272 (498)
..||+.+.-+.. .++.+.|+++|+++ ...++ .|.-+|. +...|..+|.-+...|+.
T Consensus 859 ~Tyy~yA~~Lea----r~Di~~AleyyEK~~~hafev~r-mL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem----- 928 (1416)
T KOG3617|consen 859 NTYYNYAKYLEA----RRDIEAALEYYEKAGVHAFEVFR-MLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM----- 928 (1416)
T ss_pred hhHHHHHHHHHh----hccHHHHHHHHHhcCChHHHHHH-HHHhChHHHHHHHHhccchHHHHHHHHHHhcccch-----
Confidence 578888888888 89999999888773 22222 2333333 445555666666666666
Q ss_pred hhhhHHHHHHHHHHHHHh---------------------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864 273 KQTIVRTAISKFRAAIQL---------------------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (498)
Q Consensus 273 ~~~~~~~Ai~~~~~Al~l---------------------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 331 (498)
+.|+.+|..|-.. ...+-.+.|.||.-|.+.|+ +.
T Consensus 929 -----daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~-------------------v~ 984 (1416)
T KOG3617|consen 929 -----DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD-------------------VV 984 (1416)
T ss_pred -----HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH-------------------HH
Confidence 8888888877542 35567789999999999998 66
Q ss_pred HHHHHHHHHHhc
Q 010864 332 QSAIYIAAAHAL 343 (498)
Q Consensus 332 ~A~~~~~~Al~l 343 (498)
+|+.+|-+|..+
T Consensus 985 ~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 985 KAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 666666665544
No 242
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.91 E-value=0.0029 Score=61.38 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHH
Q 010864 115 QNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK 194 (498)
Q Consensus 115 ~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~ 194 (498)
...+|+..++.++.. .+.|+.++|..+|+.|++++|++++++...|....+.++ .-+|-.+
T Consensus 112 ~~kEA~~Al~~A~~~-----~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~--------------iv~ADq~ 172 (472)
T KOG3824|consen 112 KVKEAILALKAAGRS-----RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE--------------IVEADQC 172 (472)
T ss_pred hhHHHHHHHHHHHHH-----HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh--------------hHhhhhh
Confidence 345566666655544 668999999999999999999999999999999998888 9999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHH
Q 010864 195 YDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 195 ~~~Al~l~p~~~~a~~~lg~~ 215 (498)
|-+||.++|.+.+++.|....
T Consensus 173 Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 173 YVKALTISPGNSEALVNRART 193 (472)
T ss_pred hheeeeeCCCchHHHhhhhcc
Confidence 999999999999998886543
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.89 E-value=0.0018 Score=41.61 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
+.+|+.+|.+|..+|+ +++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~--------------~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGD--------------YEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTS--------------HHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Confidence 3689999999999999 999999999999999853
No 244
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.85 E-value=0.00045 Score=67.91 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
+++|++.|..++.++|..+..|-..+.++.+ +++...|+ +.|..|++++|+.+.-+-..|.+...+|.+
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk----l~kp~~ai-------rD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLK----LKKPNAAI-------RDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeee----ccCCchhh-------hhhhhhhccCcccccccchhhHHHHHhhch
Confidence 9999999999999999999999999999999 99999999 799999999999999999999999999999
Q ss_pred chHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 268 VPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.+|...++.+.+++-+
T Consensus 199 ----------e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 199 ----------EEAAHDLALACKLDYD 214 (377)
T ss_pred ----------HHHHHHHHHHHhcccc
Confidence 9999999999998655
No 245
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.78 E-value=0.055 Score=55.12 Aligned_cols=140 Identities=13% Similarity=-0.007 Sum_probs=93.3
Q ss_pred hccHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANA-IERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 137 ~g~~~~A~~~~~~a-l~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
.|+.++|+..+..+ ....+.+++.+..+|.+|..+-. .+.......+++|+..|.++.+++|+... =.|++.+
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~-----~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~-GIN~AtL 268 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFL-----ESNFTDRESLDKAIEWYRKGFEIEPDYYS-GINAATL 268 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH-----HcCccchHHHHHHHHHHHHHHcCCccccc-hHHHHHH
Confidence 79999999999994 45667899999999999987643 11123444599999999999999976543 3566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hc----CCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAV-QL----NWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l----~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
+.- .|...+.....++-...+...+ +. .-.+.-.+-.+..+..-.|++ ++|+.++++++++
T Consensus 269 L~~----~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~----------~ka~~a~e~~~~l 334 (374)
T PF13281_consen 269 LML----AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDY----------EKAIQAAEKAFKL 334 (374)
T ss_pred HHH----cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHhhc
Confidence 666 6654443322222211122111 11 112333444556666677888 9999999999999
Q ss_pred cCCCHH
Q 010864 291 QFDFHR 296 (498)
Q Consensus 291 ~P~~~~ 296 (498)
.|....
T Consensus 335 ~~~~W~ 340 (374)
T PF13281_consen 335 KPPAWE 340 (374)
T ss_pred CCcchh
Confidence 876544
No 246
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.78 E-value=0.091 Score=55.97 Aligned_cols=176 Identities=14% Similarity=0.133 Sum_probs=125.9
Q ss_pred hccHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CH
Q 010864 137 QRILTFAAKRYANAIE-RNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LH 206 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~-~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~ 206 (498)
.|+..+-+..|.+|+. .+|.- ...|..+|..|...|+ ++.|...|++|++.+=. .+
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--------------l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--------------LDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc--------------HHHHHHHHHHhhcCCccchHHHH
Confidence 5778888999999875 56653 4679999999999999 99999999999998543 36
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC------------C------CCHHHHHHHHHHHHHhcCcc
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN------------W------NSPQALNNWGLALQELSAIV 268 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~------------P------~~~~a~~~lg~~l~~~g~~~ 268 (498)
.+|.++|..-.+ ..+++.|+. ..++|+..- | ++...|..++......|-+
T Consensus 426 ~vw~~waemElr----h~~~~~Al~-------lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf- 493 (835)
T KOG2047|consen 426 EVWCAWAEMELR----HENFEAALK-------LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF- 493 (835)
T ss_pred HHHHHHHHHHHh----hhhHHHHHH-------HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH-
Confidence 789999988888 888888885 444444221 1 1344566666666667777
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch-----hHHhccCCCCCCCCCh---------------hH
Q 010864 269 PAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE-----DTLRTGGTVNPREVSP---------------NE 328 (498)
Q Consensus 269 ~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~-----~~~~~~~~~~~~~~~~---------------~~ 328 (498)
+.-...|++.|.+.--.|.+..|.|..+....- +....+..+=.-.... ..
T Consensus 494 ---------estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 494 ---------ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred ---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988765542 1222222111000000 01
Q ss_pred HHHHHHHHHHHHHhcCCCH
Q 010864 329 LYSQSAIYIAAAHALKPSY 347 (498)
Q Consensus 329 ~~~~A~~~~~~Al~l~p~~ 347 (498)
..+.|...|++|++.-|..
T Consensus 565 klEraRdLFEqaL~~Cpp~ 583 (835)
T KOG2047|consen 565 KLERARDLFEQALDGCPPE 583 (835)
T ss_pred CHHHHHHHHHHHHhcCCHH
Confidence 2588999999999988843
No 247
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.77 E-value=0.0014 Score=53.95 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=61.9
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC--CCCCCeeeEeecCCce
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT--LPPGAGLCIETIHGPV 460 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~ 460 (498)
-..|+++||+|....|........ . ......|+|.++.+|.+|.+-. ....++|.+.|..-..
T Consensus 16 ~K~WkrRwF~L~~~~L~y~K~~~~-------------~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~ 80 (101)
T cd01264 16 IKRWKTRYFTLSGAQLLFQKGKSK-------------D--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTY 80 (101)
T ss_pred eecceeEEEEEeCCEEEEEeccCc-------------c--CCCCceEEcccceEEeeccccccccccCcEEEEEcCCceE
Confidence 358999999999776643221101 0 1113579999999999998743 2456899999888777
Q ss_pred eeeecChhhhhhHHHHHHHH
Q 010864 461 FLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 461 ~~~~~~~~~~~~~~~a~~~~ 480 (498)
||.|+|....+.|..+|..+
T Consensus 81 ~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 81 ILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred EEEeCCHHHHHHHHHHHHhh
Confidence 99999999999999999754
No 248
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=96.77 E-value=0.0016 Score=53.65 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=54.4
Q ss_pred chhhhhhhhccchh--hhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCC-C----CCCeeeEee
Q 010864 383 HSDWKRSQFVLNHE--GLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTL-P----PGAGLCIET 455 (498)
Q Consensus 383 ~~~w~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p----~~~~~~~~~ 455 (498)
...|+++||+|... .|..+..... ......|+|..+.++..+.+... | +.+.|.+.|
T Consensus 12 ~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t 75 (101)
T cd01235 12 LKGWKPRWFVLDPDKHQLRYYDDFED----------------TAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT 75 (101)
T ss_pred CCCccceEEEEECCCCEEEEecCCCC----------------CccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence 45899999999743 4444332211 12345688888777775433211 1 345577776
Q ss_pred cCCceeeeecChhhhhhHHHHHHHH
Q 010864 456 IHGPVFLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~a~~~~ 480 (498)
..-..||.|+|.++++.|++||+-+
T Consensus 76 ~~r~~~~~a~s~~e~~~Wi~ai~~~ 100 (101)
T cd01235 76 SKRTYNFLAENINEAQRWKEKIQQC 100 (101)
T ss_pred CCceEEEECCCHHHHHHHHHHHHhh
Confidence 5555688899999999999999864
No 249
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.75 E-value=0.024 Score=53.61 Aligned_cols=103 Identities=18% Similarity=0.110 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC------CHHH
Q 010864 187 LLEEACKKYDEATRL----CPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN------SPQA 253 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l----~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~------~~~a 253 (498)
.+++|++.|.-|+-. ..+ -+..+..++.+|.. +|+-+.....+++|+..|+++++.... ....
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~----~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD----LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 388899988888764 222 35677888888888 999888889999999999999976632 3678
Q ss_pred HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 010864 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF-HRAIYNLGT 303 (498)
Q Consensus 254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~-~~a~~~Lg~ 303 (498)
.+.+|.+..++|++ ++|+.+|.+++...-.. ...+.+++.
T Consensus 168 ~YLigeL~rrlg~~----------~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 168 LYLIGELNRRLGNY----------DEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHhCCH----------HHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 89999999999999 99999999999864332 234444444
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.73 E-value=0.027 Score=59.77 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=98.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNW 212 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~~a~~~l 212 (498)
....+.|.+.+....+..|+..-.++..|.++...|+ .++|++.|++++..... ..-+++.+
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~--------------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGN--------------LEEAIESFERAIESQSEWKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC--------------HHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence 5677889999999999999999999999999999999 99999999999864333 34578999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
|.++.- +++|++|. .+|.+.++.+. ..+-..+..|.++..+|+. .......++|...|+++-.
T Consensus 312 ~w~~~~----~~~w~~A~-------~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~---~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 312 AWCHMF----QHDWEEAA-------EYFLRLLKESKWSKAFYAYLAAACLLMLGRE---EEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHH----HchHHHHH-------HHHHHHHhccccHHHHHHHHHHHHHHhhccc---hhhhhhHHHHHHHHHHHHH
Confidence 999999 99999998 68888887653 4556677788889999886 2222233555556655543
No 251
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=96.72 E-value=0.0018 Score=53.46 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=58.6
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceeee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLV 463 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 463 (498)
..|+++||+|....-......+-....-... .....+...|+|.++.++....|.. .+++|.|.|.....||+
T Consensus 12 K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~-----~~~~~p~~vI~L~~c~~v~~~~d~k--~~~~f~i~t~dr~f~l~ 84 (101)
T cd01257 12 KSMHKRFFVLRAESSGGPARLEYYENEKKFL-----QKGSAPKRVIPLESCFNINKRADAK--HRHLIALYTRDEYFAVA 84 (101)
T ss_pred cCcEeEEEEEecCCCCCCceEEEECChhhcc-----ccCCCceEEEEccceEEEeeccccc--cCeEEEEEeCCceEEEE
Confidence 6899999999765311101111111000000 0012356688999999887766632 46999999988878999
Q ss_pred ecChhhhhhHHHHHH
Q 010864 464 ADSWEALDGWLDAIR 478 (498)
Q Consensus 464 ~~~~~~~~~~~~a~~ 478 (498)
|+|..+.+.|+++|.
T Consensus 85 aese~E~~~Wi~~i~ 99 (101)
T cd01257 85 AENEAEQDSWYQALL 99 (101)
T ss_pred eCCHHHHHHHHHHHh
Confidence 999999999999995
No 252
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.70 E-value=0.002 Score=54.00 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=53.6
Q ss_pred chhhhhhhhccchhhh-------hhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC---CCCCCCeee
Q 010864 383 HSDWKRSQFVLNHEGL-------QQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL---TLPPGAGLC 452 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~ 452 (498)
...|+++||+|....+ ..+-... .......|+|..+..++..... .-+..+.|.
T Consensus 16 ~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~----------------~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~ 79 (108)
T cd01266 16 RTKWVRRYFVLHCGDRERNLFALEYYKTSR----------------KFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFD 79 (108)
T ss_pred ccCcEEEEEEEeccccCCCcceEEEECCCC----------------CCccceEEECCccEEEcccccccccCcccceEEE
Confidence 3589999999987654 2221111 1234567777776665432111 112356788
Q ss_pred EeecCCceeeeecChhhhhhHHHHHHHH
Q 010864 453 IETIHGPVFLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 480 (498)
+.|..-..||.|+|.++++.|+++|+.+
T Consensus 80 i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 80 IETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 8876656699999999999999999764
No 253
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.62 E-value=0.14 Score=55.77 Aligned_cols=163 Identities=18% Similarity=0.107 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhhhcc------------hhh-HHhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcCCC
Q 010864 116 NNAAMELINSVTGVD------------EEG-RSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSL 177 (498)
Q Consensus 116 ~~~A~~~~~~~~~~~------------~~~-~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~~ 177 (498)
...+..++..+.... ..| +....+++.|+.+|+.+... .-.++.+.+.+|.+|.....
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~---- 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG---- 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC----
Confidence 445666665555444 112 33467899999999999771 12266789999999988542
Q ss_pred CCCCCchhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864 178 DSTSPSKDA-LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (498)
Q Consensus 178 ~~~~~~~~~-~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~ 256 (498)
... +++.|...|.++-.+. ++.+.+++|.++.. .. ..+++++|..+|..|... .+..+.++
T Consensus 304 ------~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~----g~----~~~d~~~A~~yy~~Aa~~--G~~~A~~~ 365 (552)
T KOG1550|consen 304 ------VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYET----GT----KERDYRRAFEYYSLAAKA--GHILAIYR 365 (552)
T ss_pred ------CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHc----CC----ccccHHHHHHHHHHHHHc--CChHHHHH
Confidence 000 4899999999997764 56788999999986 33 234455666888887754 68899999
Q ss_pred HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (498)
Q Consensus 257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~ 308 (498)
++.+|..-.- -..+...|..+|+++.+.. .+.+.+.++..+..-
T Consensus 366 la~~y~~G~g------v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 366 LALCYELGLG------VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYG 409 (552)
T ss_pred HHHHHHhCCC------cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHc
Confidence 9998875422 2456699999999999987 566677777665443
No 254
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=96.59 E-value=0.0016 Score=53.81 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=60.1
Q ss_pred hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC-CC
Q 010864 367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL-TL 445 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 445 (498)
..|||.-... ....|.++||+|....|........ ......|+|.++ +++...+. ..
T Consensus 4 k~G~L~Kkg~-----~~k~WkkRwfvL~~~~L~yyk~~~~----------------~~~~~~I~L~~~-~v~~~~~~~~~ 61 (100)
T cd01233 4 KKGYLNFPEE-----TNSGWTRRFVVVRRPYLHIYRSDKD----------------PVERGVINLSTA-RVEHSEDQAAM 61 (100)
T ss_pred eeEEEEeeCC-----CCCCcEEEEEEEECCEEEEEccCCC----------------ccEeeEEEeccc-EEEEccchhhh
Confidence 3566665321 2358999999999876665433221 122445666643 44443332 12
Q ss_pred C-CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864 446 P-PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 446 p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
. ....|.|.|..-..||.|+|.+++.+|.+||.-+|
T Consensus 62 ~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 62 VKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred cCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 1 34578888776667999999999999999998776
No 255
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.58 E-value=0.39 Score=48.41 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=109.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010864 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (498)
Q Consensus 145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g 224 (498)
.-|++.+..+|.+.++|..+....-..-...... ........+.-+..|++||+.+|++...+..+=.+..+ ..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~--~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~----~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS--KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK----VW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc--hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hC
Confidence 4678899999999999999987766554311111 23445567888999999999999998888776666666 66
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCcchHHhhhhhHHHHHHHHHHHHHhcC-----------
Q 010864 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE-LSAIVPAREKQTIVRTAISKFRAAIQLQF----------- 292 (498)
Q Consensus 225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P----------- 292 (498)
..++.. +.+++++..+|++...|..+=...+. .+.+ .+......|.++|+.-.
T Consensus 80 ~~~~l~-------~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f--------~v~~~~~~y~~~l~~L~~~~~~~~~~~~ 144 (321)
T PF08424_consen 80 DSEKLA-------KKWEELLFKNPGSPELWREYLDFRQSNFASF--------TVSDVRDVYEKCLRALSRRRSGRMTSHP 144 (321)
T ss_pred CHHHHH-------HHHHHHHHHCCCChHHHHHHHHHHHHHhccC--------cHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 666666 67888888999999888765544433 3443 23677777877776411
Q ss_pred CC-------HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864 293 DF-------HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344 (498)
Q Consensus 293 ~~-------~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 344 (498)
+- ..++.++...+...|- .+.|...++..++++
T Consensus 145 ~~~~~e~~~l~v~~r~~~fl~~aG~-------------------~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 145 DLPELEEFMLYVFLRLCRFLRQAGY-------------------TERAVALWQALLEFN 184 (321)
T ss_pred chhhHHHHHHHHHHHHHHHHHHCCc-------------------hHHHHHHHHHHHHHH
Confidence 11 1233444444555554 677888888888775
No 256
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.2 Score=47.17 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=80.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-----C-CHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-----T-LHDAFY 210 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-----~-~~~a~~ 210 (498)
.+++++|.++|.++ |+.|..... +..|=..|.++-.++- + -+..|.
T Consensus 27 ~~k~eeAadl~~~A--------------an~yklaK~--------------w~~AG~aflkaA~~h~k~~skhDaat~Yv 78 (288)
T KOG1586|consen 27 SNKYEEAAELYERA--------------ANMYKLAKN--------------WSAAGDAFLKAADLHLKAGSKHDAATTYV 78 (288)
T ss_pred CcchHHHHHHHHHH--------------HHHHHHHHh--------------HHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 35888999888886 344555555 6666666666554421 1 123344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.-+.+|. .++..+|+..++.|+..|...-+.. .-+.-+..+|.+|... +.++++||.+|++|-+.
T Consensus 79 eA~~cyk-----k~~~~eAv~cL~~aieIyt~~Grf~-~aAk~~~~iaEiyEsd---------l~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 79 EAANCYK-----KVDPEEAVNCLEKAIEIYTDMGRFT-MAAKHHIEIAEIYESD---------LQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHhh-----ccChHHHHHHHHHHHHHHHhhhHHH-HHHhhhhhHHHHHhhh---------HHHHHHHHHHHHHHHHH
Confidence 4444443 5678888865555555444322110 0112233444444322 35559999999999876
Q ss_pred cCCC-HHHHHH-----HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 291 QFDF-HRAIYN-----LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 291 ~P~~-~~a~~~-----Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
-... ..+.-| .+..-..+++ |.+|+..|++.....-++.
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leq-------------------Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQ-------------------YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHhccch
Confidence 4332 222222 2222223333 7788888887766665555
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.54 E-value=0.09 Score=53.22 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=108.8
Q ss_pred HHhhccHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC-C-C---
Q 010864 134 RSRQRILTFAAKRYANAIERNP----EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC-P-T--- 204 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~-p-~--- 204 (498)
..+.|.++.|...+.++...++ ..+.+.+..+.+++..|+ ..+|+..++..+... . .
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------------~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------------QEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHhhhcccc
Confidence 4567999999999999988652 257888899999999999 999999999888821 1 1
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864 205 ----------------------LHDAFYNWAIAISDRAKMRGRTKEAE------ELWKQATKNYEKAVQLNWNSPQALNN 256 (498)
Q Consensus 205 ----------------------~~~a~~~lg~~~~~~~~~~g~~~eA~------~~~~~Al~~~~~Al~l~P~~~~a~~~ 256 (498)
...-....+.++.. .|++-... ..++.++..|+++++++|+...+|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~----~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLL----LAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHH----HHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 11122344555555 66666666 66777789999999999999999999
Q ss_pred HHHHHHHhcCcchH-------HhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 257 WGLALQELSAIVPA-------REKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 257 lg~~l~~~g~~~~a-------~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
+|..+.+.-..... .........|+..|-+++.+.+++
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~ 342 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY 342 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence 99998877554322 134556788999999999998883
No 258
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.45 E-value=0.48 Score=46.77 Aligned_cols=177 Identities=21% Similarity=0.119 Sum_probs=122.6
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
...+.+..|+..|.++-.. .++.+...+|..|..-.. ...+..+|...|+.+ .+..++.+.++||.
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~g----------v~~~~~~A~~~~~~~--a~~g~~~a~~~lg~ 117 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKG----------VSRDKTKAADWYRCA--AADGLAEALFNLGL 117 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccC----------ccccHHHHHHHHHHH--hhcccHHHHHhHHH
Confidence 4467888888888888762 344788888888876432 223489999999944 56778899999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
+|.. |+. ....+.+|+..|++|.+..-.. ..+.+++|.+|..-. . ......+...|+..|.++-...
T Consensus 118 ~~~~-----G~g--v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~--~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 118 MYAN-----GRG--VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-Q--ALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred HHhc-----CCC--cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-h--hhcccHHHHhHHHHHHHHHHhc--
Confidence 9975 321 1224556668999998775333 345899999888652 1 0111223368999999998776
Q ss_pred CHHHHHHHHHHHHHc-chhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864 294 FHRAIYNLGTVLYGL-AEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~ 353 (498)
++.+.++||.+|..- | . ...+.+|..+|.+|-+.......+..+
T Consensus 186 ~~~a~~~lg~~y~~G~G-------v---------~~d~~~A~~wy~~Aa~~g~~~a~~~~~ 230 (292)
T COG0790 186 NPDAQLLLGRMYEKGLG-------V---------PRDLKKAFRWYKKAAEQGDGAACYNLG 230 (292)
T ss_pred CHHHHHHHHHHHHcCCC-------C---------CcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 789999999777553 2 1 112789999999999988733344444
No 259
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.44 E-value=0.091 Score=57.09 Aligned_cols=164 Identities=20% Similarity=0.118 Sum_probs=119.1
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH-----hCCCCHHHHHHHH
Q 010864 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-----LCPTLHDAFYNWA 213 (498)
Q Consensus 139 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-----l~p~~~~a~~~lg 213 (498)
+...|...|+.+... .+..+.+.+|.+|..-+. ...++.+.|+.+|+.+.. ..-.++.+.+.+|
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~---------g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg 295 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTY---------GVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLG 295 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccc---------cccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHH
Confidence 467788888888766 688999999999987644 334569999999999977 1222667899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.+|.+ ..-...- +++.|+.+|.++-.+ +++.+.+++|.++..-. +..|...|..+|..|.. -.
T Consensus 296 ~~Y~~----g~~~~~~--d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~-------~~~d~~~A~~yy~~Aa~--~G 358 (552)
T KOG1550|consen 296 RLYLQ----GLGVEKI--DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGT-------KERDYRRAFEYYSLAAK--AG 358 (552)
T ss_pred HHHhc----CCCCccc--cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCC-------ccccHHHHHHHHHHHHH--cC
Confidence 99987 4311111 455566899888876 46888999999988665 22345899999999875 46
Q ss_pred CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 010864 294 FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKP 345 (498)
Q Consensus 294 ~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 345 (498)
+..+.++++.+|..-.. . ......|..+|.++-+...
T Consensus 359 ~~~A~~~la~~y~~G~g------v---------~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 359 HILAIYRLALCYELGLG------V---------ERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred ChHHHHHHHHHHHhCCC------c---------CCCHHHHHHHHHHHHHccC
Confidence 78899999998764311 0 1115778888888888873
No 260
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.46 Score=48.39 Aligned_cols=184 Identities=17% Similarity=0.182 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010864 141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 220 (498)
Q Consensus 141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~ 220 (498)
.++++.=.+.+..+|+...+|+.+-.++...-... +....++...+++-+.....+|+.+|+...+|+.+..++.+
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~--~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~-- 121 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRA--QLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK-- 121 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhh--cCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--
Confidence 56788888889999999999987776665543300 22233445578888999999999999999999999999988
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (498)
Q Consensus 221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 300 (498)
.+.. .|.+-+..++++++.||.|-.+|...-.+....... .+...+=+++..++|.-++.+-.+|.+
T Consensus 122 --~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~------~~~~~~El~ftt~~I~~nfSNYsaWhy 188 (421)
T KOG0529|consen 122 --NPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS------RNLEKEELEFTTKLINDNFSNYSAWHY 188 (421)
T ss_pred --CCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc------cccchhHHHHHHHHHhccchhhhHHHH
Confidence 6654 566677899999999999999999888877655432 112266778999999999999999999
Q ss_pred HHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 301 LGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 301 Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
...++-.+-... ..+. .-+.+.+..-.++...|.--+|++.
T Consensus 189 Rs~lL~~l~~~~------~~g~-~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 189 RSLLLSTLHPKE------ADGN-FMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred HHHHHHHhcccc------ccCc-cCCHHHHHHHHHHHHHHHhcCcccc
Confidence 988877554310 0011 2345567777888888999999988
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.42 E-value=0.18 Score=53.68 Aligned_cols=152 Identities=14% Similarity=0.009 Sum_probs=105.3
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--cCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD--NVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~--~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
.|+-+.++..+.++.+ ..+-...+..+..+.+...- ....+ ....+.+.|.+.++...+..|+..-..+..|.
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~----~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR 275 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGID----GEDVPLEEAEELLEEMLKRYPNSALFLFFEGR 275 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCc----ccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4888999999999877 33333333333222222111 00000 02345899999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
++.. .|+.++|++.|++|+..-.. ...-..-.++.+|.++.-+++| ++|..+|.+.++.+.-.
T Consensus 276 ~~~~----~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WS 338 (468)
T PF10300_consen 276 LERL----KGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWS 338 (468)
T ss_pred HHHH----hcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccH
Confidence 9999 99999999655554421111 1111356789999999999999 99999999999865443
Q ss_pred -HHHHHHHHHHHHHcch
Q 010864 295 -HRAIYNLGTVLYGLAE 310 (498)
Q Consensus 295 -~~a~~~Lg~~~~~~g~ 310 (498)
+.-.|..|.|+..+|+
T Consensus 339 ka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 3344667888888887
No 262
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.41 E-value=0.017 Score=59.48 Aligned_cols=125 Identities=14% Similarity=0.045 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--------CHHHHHHHHH
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--------SPQALNNWGL 259 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--------~~~a~~~lg~ 259 (498)
+.-+..-.+-++.+.-+.+.+.+..+..+.- .|++..|.+++ ..--+...|. .-..|||+|.
T Consensus 222 Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~----~gn~~kA~KlL------~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 222 LKLAKREVKHVMNIAQDSSMALLLKSQLEYA----HGNHPKAMKLL------LVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH----hcchHHHHHHH------HhcccccccCccccchhhhheeecCcce
Confidence 6666666666666677788888888888877 99999999522 1112233333 2345899999
Q ss_pred HHHHhcCcchHHhhhhhHHHHHHHHHHHHH-----h----c---------CCCHHHHHHHHHHHHHcchhHHhccCCCCC
Q 010864 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQ-----L----Q---------FDFHRAIYNLGTVLYGLAEDTLRTGGTVNP 321 (498)
Q Consensus 260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~-----l----~---------P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~ 321 (498)
+++++|.| ..++.+|.+|++ + . -..-++.||.|..|...|+
T Consensus 292 Ih~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr----------- 350 (696)
T KOG2471|consen 292 IHYQLGCY----------QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR----------- 350 (696)
T ss_pred EeeehhhH----------HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC-----------
Confidence 99999999 999999999996 1 1 2346789999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 322 REVSPNELYSQSAIYIAAAHALKPSYSVYS 351 (498)
Q Consensus 322 ~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~ 351 (498)
-..|.+||.++...--.+++.+
T Consensus 351 --------Pl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 351 --------PLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred --------cHHHHHHHHHHHHHHhcCcHHH
Confidence 6788999999888777776433
No 263
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.40 E-value=1.1 Score=45.48 Aligned_cols=92 Identities=20% Similarity=0.006 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------------
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQ-------------------------------- 235 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~-------------------------------- 235 (498)
.+.|+.+-+++-...|...-++..+=...+. .|+++.|+++.++
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 5555555555555555554444443333444 5555555555422
Q ss_pred --HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 236 --ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 236 --Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
|...-.+++++.|+...+-..-+.+|.+.|+. .++-..++.+.+..|.
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~----------rKg~~ilE~aWK~ePH 295 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNL----------RKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccch----------hhhhhHHHHHHhcCCC
Confidence 44677788999999999999999999999998 6666666666666554
No 264
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=96.37 E-value=0.0042 Score=51.55 Aligned_cols=82 Identities=12% Similarity=0.091 Sum_probs=51.5
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccc---ccccccCCC-CC-CCCeeeEeecCC
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIV---SVSACADLT-LP-PGAGLCIETIHG 458 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~p-~~~~~~~~~~~~ 458 (498)
..|+++||+|....|..+...... .+...|+|..+. +|......+ -. ..++|.|.|..-
T Consensus 14 k~wkkRwFvL~~~~L~Yyk~~~d~----------------~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~R 77 (103)
T cd01251 14 EGFKKRWFTLDDRRLMYFKDPLDA----------------FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPER 77 (103)
T ss_pred CCceeEEEEEeCCEEEEECCCCCc----------------CcCcEEEeeccccceeEeccCCccccccccceEEEEeCCe
Confidence 469999999997777765432221 122345555332 222111111 11 234899997644
Q ss_pred ceeeeecChhhhhhHHHHHHHHH
Q 010864 459 PVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 459 ~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
..||.|+|.++++.|+.||.-|.
T Consensus 78 ty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 78 KFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred EEEEECCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999875
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.2 Score=45.99 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 010864 142 FAAKRYANAIERNPEDYD---ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIA 215 (498)
Q Consensus 142 ~A~~~~~~al~~~P~~~~---a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~ 215 (498)
+.+...++....++.... +-..++..+.+.++ +++|+..++.++..-.+. .-+-.+|+.+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------------~d~A~aqL~~~l~~t~De~lk~l~~lRLArv 135 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANN--------------LDKAEAQLKQALAQTKDENLKALAALRLARV 135 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 455555666666655543 34677888899999 999999999998764442 3456788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
... +|++++|+. .+.... +++ ....-...|.++...|+- ++|+..|++|++..++.
T Consensus 136 q~q----~~k~D~AL~-------~L~t~~--~~~w~~~~~elrGDill~kg~k----------~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 136 QLQ----QKKADAALK-------TLDTIK--EESWAAIVAELRGDILLAKGDK----------QEARAAYEKALESDASP 192 (207)
T ss_pred HHH----hhhHHHHHH-------HHhccc--cccHHHHHHHHhhhHHHHcCch----------HHHHHHHHHHHHccCCh
Confidence 999 999999993 333221 111 233456789999999999 99999999999997553
No 266
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.31 E-value=0.012 Score=61.65 Aligned_cols=100 Identities=23% Similarity=0.201 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 010864 187 LLEEACKKYDEATRLCPTLHD-AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELS 265 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~-a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g 265 (498)
+...|++++..|+-+.|.... ...+|+.++.+ .|-.-.|- ..+.+++.++-..+-.++.+|.++..+.
T Consensus 622 n~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~----~~~~~da~-------~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 622 NSTFAIACLQRALNLAPLQQDVPLVNLANLLIH----YGLHLDAT-------KLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred CcHHHHHHHHHHhccChhhhcccHHHHHHHHHH----hhhhccHH-------HHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 399999999999999997544 57899999999 88777888 6888888888888899999999999999
Q ss_pred CcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864 266 AIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (498)
Q Consensus 266 ~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~ 307 (498)
+. +.|+++|++|+.++|+++...+.|-.+-..
T Consensus 691 ~i----------~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 691 NI----------SGALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred hh----------HHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 99 999999999999999999998887766553
No 267
>PRK10941 hypothetical protein; Provisional
Probab=96.26 E-value=0.026 Score=55.19 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=64.8
Q ss_pred HHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864 123 INSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (498)
Q Consensus 123 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 202 (498)
+.+....-...+.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|. +..|...++..++.+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c--------------~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC--------------EHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------------cHHHHHHHHHHHHhC
Confidence 333333333447889999999999999999999999999999999999999 999999999999999
Q ss_pred CCCHHHHHH
Q 010864 203 PTLHDAFYN 211 (498)
Q Consensus 203 p~~~~a~~~ 211 (498)
|+++.+-.-
T Consensus 246 P~dp~a~~i 254 (269)
T PRK10941 246 PEDPISEMI 254 (269)
T ss_pred CCchhHHHH
Confidence 998876544
No 268
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.23 E-value=0.0079 Score=39.45 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 253 ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 253 a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
+|.+||.+|..+|++ ++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhc
Confidence 588999999999999 99999999977653
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.07 Score=52.66 Aligned_cols=116 Identities=18% Similarity=-0.000 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
...-+.+++..|+ +.+|....++.|.-.|.+.-++..--.+++. +|+...-. ..+
T Consensus 106 ~h~~aai~~~~g~--------------~h~a~~~wdklL~d~PtDlla~kfsh~a~fy----~G~~~~~k-------~ai 160 (491)
T KOG2610|consen 106 RHAKAAILWGRGK--------------HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY----NGNQIGKK-------NAI 160 (491)
T ss_pred hhhhHHHhhcccc--------------ccHHHHHHHHHHHhCchhhhhhhhhhhHHHh----ccchhhhh-------hHH
Confidence 3344566677787 9999999999999999998887777777777 88887777 577
Q ss_pred HHHHhc-CCCC---HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864 241 EKAVQL-NWNS---PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 241 ~~Al~l-~P~~---~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
++.+-. +|+. ....-.++..+.+.|-| ++|.+.-++++++++.+.-+...++.++...|+.
T Consensus 161 ~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~ 225 (491)
T KOG2610|consen 161 EKIIPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWASHAKAHVLEMNGRH 225 (491)
T ss_pred HHhccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence 887754 6554 66777788889999999 9999999999999999999999999999888864
No 270
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.081 Score=55.89 Aligned_cols=136 Identities=20% Similarity=0.048 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864 141 TFAAKRYANAIERNPEDYDALYN--WALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (498)
Q Consensus 141 ~~A~~~~~~al~~~P~~~~a~~~--lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~ 218 (498)
.-++..+...+.+++.++..+.. +...+...++ ...+......++..+|++..++.|||.++..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~ 113 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLAD--------------STLAFLAKRIPLSVNPENCPAVQNLAAALEL 113 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhcccccc--------------chhHHHHHhhhHhcCcccchHHHHHHHHHHH
Confidence 33667777777888998887543 4777777787 8889999999999999999999999999988
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHH
Q 010864 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAI 298 (498)
Q Consensus 219 ~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~ 298 (498)
.|....+.. ...+.+....|++.+....+-.+|. ++++ ....++..++.....+++.+.|+++.+.
T Consensus 114 ----~~~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~---~~~l~~~~~~~~~l~~~~d~~p~~~~~~ 179 (620)
T COG3914 114 ----DGLQFLALA------DISEIAEWLSPDNAEFLGHLIRFYQ-LGRY---LKLLGRTAEAELALERAVDLLPKYPRVL 179 (620)
T ss_pred ----hhhHHHHHH------HHHHHHHhcCcchHHHHhhHHHHHH-HHHH---HHHhccHHHHHHHHHHHHHhhhhhhhhH
Confidence 777777664 4555688899999999988855555 5554 3334444888899999999999997776
Q ss_pred HHHHHH
Q 010864 299 YNLGTV 304 (498)
Q Consensus 299 ~~Lg~~ 304 (498)
..+...
T Consensus 180 ~~~~~~ 185 (620)
T COG3914 180 GALMTA 185 (620)
T ss_pred hHHHHH
Confidence 666555
No 271
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.16 E-value=0.017 Score=59.86 Aligned_cols=90 Identities=23% Similarity=0.115 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
...|+..|.+++...|.....+.|.+.++++++++ |+.-.|+ ..+..|+++||....+|+.|+.++.+++++
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-~d~~~Al-------rDch~Alrln~s~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-GDSYLAL-------RDCHVALRLNPSIQKAHFRLARALNELTRY 461 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-ccHHHHH-------HhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence 88899999999999999999999999999884443 3555555 789999999999999999999999999999
Q ss_pred chHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864 268 VPAREKQTIVRTAISKFRAAIQLQFDFH 295 (498)
Q Consensus 268 ~~a~~~~~~~~~Ai~~~~~Al~l~P~~~ 295 (498)
.+|+.+...+....|.+.
T Consensus 462 ----------~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 462 ----------LEALSCHWALQMSFPTDV 479 (758)
T ss_pred ----------HHhhhhHHHHhhcCchhh
Confidence 999999888877777443
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.12 E-value=0.01 Score=38.89 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 202 (498)
+|.+||.+|..+|+ +++|+++|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~--------------~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGD--------------YEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT---------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhc
Confidence 58899999999999 999999999977653
No 273
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.11 E-value=0.0044 Score=50.57 Aligned_cols=78 Identities=13% Similarity=0.278 Sum_probs=52.3
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecC-Ccee
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPVF 461 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~ 461 (498)
...|.++||+|....|..+...... .....|+|... .+..+.+.. ..+.|.|.|.. .+.|
T Consensus 17 ~k~WkkrwfvL~~~~L~yyk~~~~~----------------~~~~~I~L~~~-~v~~~~~~~--k~~~F~I~~~~~~~~~ 77 (96)
T cd01260 17 GQKWARRWFVLKGTTLYWYRSKQDE----------------KAEGLIFLSGF-TIESAKEVK--KKYAFKVCHPVYKSFY 77 (96)
T ss_pred ccCceeEEEEEECCEEEEECCCCCC----------------ccceEEEccCC-EEEEchhcC--CceEEEECCCCCcEEE
Confidence 3489999999987666654432221 12345666654 333333333 55678887666 5569
Q ss_pred eeecChhhhhhHHHHHHH
Q 010864 462 LVADSWEALDGWLDAIRL 479 (498)
Q Consensus 462 ~~~~~~~~~~~~~~a~~~ 479 (498)
|.|+|.+++..|++||+.
T Consensus 78 f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 78 FAAETLDDLSQWVNHLIT 95 (96)
T ss_pred EEeCCHHHHHHHHHHHHh
Confidence 999999999999999974
No 274
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.07 E-value=0.064 Score=44.61 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=76.5
Q ss_pred hHHhhccHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHH
Q 010864 133 GRSRQRILTFAAKRYANAIERNPEDY---DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAF 209 (498)
Q Consensus 133 ~~~~~g~~~~A~~~~~~al~~~P~~~---~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~ 209 (498)
.+++.|++-+|++..+..+...+++. ..+..-|.++..++.. ......+...+-.++++|.++..+.|..+..+
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~---ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK---TENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh---ccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 35678999999999999999998876 5667779999888762 22233455678899999999999999998888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l 246 (498)
+.||.-+.. ...|++++...+++|..
T Consensus 82 ~~la~~l~s-----------~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGS-----------VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhh-----------HHHHHHHHHHHHHHhcc
Confidence 888877655 34445555677777654
No 275
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.07 E-value=0.013 Score=36.97 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
++++++|.++...|+ +++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~--------------~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGD--------------YDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCH--------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccC--------------HHHHHHHHHHHHHHCcCC
Confidence 578999999999999 999999999999999974
No 276
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.05 E-value=0.0088 Score=48.98 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=41.8
Q ss_pred cccccCCcccccccccCCCCCCCCeeeEeecCC-ceeeeecChhhhhhHHHHHH
Q 010864 426 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFLVADSWEALDGWLDAIR 478 (498)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~ 478 (498)
...|+++.+ +|.++.|..+-+-+.|.+-+..+ -+|+.+++.++.+.|..+|+
T Consensus 44 ~gli~l~~~-~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~~er~~Wi~~l~ 96 (98)
T cd01245 44 IGLIDLSDA-YLYPVHDSLFGRPNCFQIVERALPTVYYSCRSSEERDKWIESLQ 96 (98)
T ss_pred cceeecccc-EEEEccccccCCCeEEEEecCCCCeEEEEeCCHHHHHHHHHHHh
Confidence 347888888 99999997666568888876665 46777777799999999986
No 277
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.98 E-value=0.038 Score=58.04 Aligned_cols=102 Identities=20% Similarity=0.094 Sum_probs=90.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI 214 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~-~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~ 214 (498)
.+|+-..|+.++..|+...|... ....+|+.++...|- .-.|-..+.++|.++-..+-.++-+|.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~--------------~~da~~~l~q~l~~~~sepl~~~~~g~ 684 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL--------------HLDATKLLLQALAINSSEPLTFLSLGN 684 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh--------------hccHHHHHHHHHhhcccCchHHHhcch
Confidence 46899999999999999998654 457899999999998 899999999999999888889999899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 215 AISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 215 ~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
++.. +.+.+.|+ ..|++|+.++|+++.+.+.|-.+-+
T Consensus 685 ~~l~----l~~i~~a~-------~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 685 AYLA----LKNISGAL-------EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHH----HhhhHHHH-------HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8888 88888887 6999999999999999998887766
No 278
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.96 E-value=0.013 Score=37.11 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
++++++|.++.++|++ ++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence 4789999999999999 99999999999999974
No 279
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=95.96 E-value=0.0091 Score=48.32 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=46.4
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-ee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-FL 462 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~ 462 (498)
..|+++||+|....|..+-...... ......|+|....-+.... ....|.|.+..+.+ ||
T Consensus 13 k~Wk~RwFvL~~g~L~Yyk~~~~~~--------------~~~~G~I~L~~~~i~~~~~-----~~~~F~i~~~~~r~~~L 73 (91)
T cd01247 13 NGWQDRYFVLKEGNLSYYKSEAEKS--------------HGCRGSIFLKKAIIAAHEF-----DENRFDISVNENVVWYL 73 (91)
T ss_pred CCCceEEEEEECCEEEEEecCccCc--------------CCCcEEEECcccEEEcCCC-----CCCEEEEEeCCCeEEEE
Confidence 4799999999765555433211100 0123445555422221111 13567776556455 99
Q ss_pred eecChhhhhhHHHHHHH
Q 010864 463 VADSWEALDGWLDAIRL 479 (498)
Q Consensus 463 ~~~~~~~~~~~~~a~~~ 479 (498)
.|+|.++.+.|++||..
T Consensus 74 ~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 74 RAENSQSRLLWMDSVVR 90 (91)
T ss_pred EeCCHHHHHHHHHHHhh
Confidence 99999999999999963
No 280
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.94 E-value=0.0089 Score=48.78 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=49.6
Q ss_pred chhhhhhhhccchhh--hhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce
Q 010864 383 HSDWKRSQFVLNHEG--LQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV 460 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 460 (498)
-..|+++||+|+..+ |..+..... ..+...|+|..+..+....+ ....|.|.|..--.
T Consensus 14 ~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------~~p~G~I~L~~~~~~~~~~~----~~~~F~i~t~~r~y 73 (95)
T cd01265 14 LRGRRSRWFALDDRTCYLYYYKDSQD----------------AKPLGRVDLSGAAFTYDPRE----EKGRFEIHSNNEVI 73 (95)
T ss_pred CcCceeEEEEEcCCCcEEEEECCCCc----------------ccccceEECCccEEEcCCCC----CCCEEEEEcCCcEE
Confidence 458999999998543 444322211 12344566665433322222 23578888755445
Q ss_pred eeeecChhhhhhHHHHHHHH
Q 010864 461 FLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 461 ~~~~~~~~~~~~~~~a~~~~ 480 (498)
+|.|+|.++++.|+.||...
T Consensus 74 ~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 74 ALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred EEECCCHHHHHHHHHHHHhh
Confidence 99999999999999999764
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.93 E-value=0.33 Score=46.11 Aligned_cols=140 Identities=15% Similarity=0.053 Sum_probs=86.5
Q ss_pred hccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------
Q 010864 137 QRILTFAAKRYANAIERN-----PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------ 205 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------ 205 (498)
...+.++..+|++|..+. |+.+..-...+.-..+.-+ .++|+..|++++.+--..
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~--------------Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVK--------------PDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC--------------HHHHHHHHHHHHHHHhccchHHHH
Confidence 456667777777776552 4433333333333334444 899999999999883332
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~ 283 (498)
.+.+...+.+|.. ..++.+|-..+.+-...+ ++.+ ++.-.++...-.+|....+| ..|..+
T Consensus 150 ~el~gk~sr~lVr----l~kf~Eaa~a~lKe~~~~---~~~~~y~~~~k~~va~ilv~L~~~Dy----------v~aekc 212 (308)
T KOG1585|consen 150 FELYGKCSRVLVR----LEKFTEAATAFLKEGVAA---DKCDAYNSQCKAYVAAILVYLYAHDY----------VQAEKC 212 (308)
T ss_pred HHHHHHhhhHhhh----hHHhhHHHHHHHHhhhHH---HHHhhcccHHHHHHHHHHHHhhHHHH----------HHHHHH
Confidence 2455666777777 888888875443322222 2333 22333344444555556677 999999
Q ss_pred HHHHHHh----cCCCHHHHHHHHHHHHH
Q 010864 284 FRAAIQL----QFDFHRAIYNLGTVLYG 307 (498)
Q Consensus 284 ~~~Al~l----~P~~~~a~~~Lg~~~~~ 307 (498)
|+..-++ .+++..++.||-..|-.
T Consensus 213 ~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 213 YRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred hcchhcCccccChHHHHHHHHHHHHhcc
Confidence 9998776 46777888887776543
No 282
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.78 E-value=0.024 Score=37.88 Aligned_cols=37 Identities=32% Similarity=0.299 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL 246 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l 246 (498)
+.++.+||.+|.. +|++++|+.++++++..+++.+.-
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHHHHHHHhcc
Confidence 4678999999999 999999999999999999887643
No 283
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.74 E-value=0.015 Score=35.46 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
.+++++|.++..+|++ ++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence 5789999999999999 99999999999998863
No 284
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.63 E-value=0.021 Score=34.79 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
.+++++|.++..+++ +++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~--------------~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGD--------------YDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhh--------------HHHHHHHHHHHHccCCCC
Confidence 578999999999999 999999999999998863
No 285
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.57 E-value=0.042 Score=53.51 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=59.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg 302 (498)
.|+.+.|. ..|+.|+.++|++++++..+|.......+. -+|-.+|-+|+.++|.+.+++.|..
T Consensus 129 ~Gk~ekA~-------~lfeHAlalaP~~p~~L~e~G~f~E~~~~i----------v~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 129 DGKLEKAM-------TLFEHALALAPTNPQILIEMGQFREMHNEI----------VEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred ccchHHHH-------HHHHHHHhcCCCCHHHHHHHhHHHHhhhhh----------HhhhhhhheeeeeCCCchHHHhhhh
Confidence 89999998 799999999999999999999999888888 9999999999999999999998876
Q ss_pred HH
Q 010864 303 TV 304 (498)
Q Consensus 303 ~~ 304 (498)
..
T Consensus 192 RT 193 (472)
T KOG3824|consen 192 RT 193 (472)
T ss_pred cc
Confidence 43
No 286
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.50 E-value=0.69 Score=47.37 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=102.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------------C-----------
Q 010864 148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------------C----------- 202 (498)
Q Consensus 148 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------------~----------- 202 (498)
-..+..+|-+.+++..++.++..+|+ +..|.+..++||-. +
T Consensus 30 ~~ll~~~PyHidtLlqls~v~~~~gd--------------~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~ 95 (360)
T PF04910_consen 30 INLLQKNPYHIDTLLQLSEVYRQQGD--------------HAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYR 95 (360)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCc
Confidence 34568899999999999999999999 77777777776532 1
Q ss_pred -CCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHH-HHHHHHHHHHHhcCcchHHhhhhh
Q 010864 203 -PTLH---DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQ-ALNNWGLALQELSAIVPAREKQTI 276 (498)
Q Consensus 203 -p~~~---~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~-a~~~lg~~l~~~g~~~~a~~~~~~ 276 (498)
+.|- .+.+.....+.+ +|-+..|. +.++-.+.+||. ++- +++.+-....+.++|
T Consensus 96 ~~eNR~fflal~r~i~~L~~----RG~~rTAl-------E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y--------- 155 (360)
T PF04910_consen 96 RPENRQFFLALFRYIQSLGR----RGCWRTAL-------EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY--------- 155 (360)
T ss_pred cccchHHHHHHHHHHHHHHh----cCcHHHHH-------HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH---------
Confidence 1111 233444444555 77777777 689989999998 664 444555555566776
Q ss_pred HHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 277 VRTAISKFRAAIQLQF-----DFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 277 ~~~Ai~~~~~Al~l~P-----~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
+--+..++....... ..+...+.++.+++.+++..... .............|...+.+|+..-|.-.
T Consensus 156 -~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~----~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 156 -QWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQ----SSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred -HHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCccccc----cccccccccchhHHHHHHHHHHHHhHHHH
Confidence 666666665544211 13456778888888888731000 00111112234677778888888777543
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.57 Score=45.81 Aligned_cols=112 Identities=19% Similarity=0.101 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~ 238 (498)
+.-+.-+.-....|+ +.+|...|..++...|++..+...++.+|.. .|+.+.|..
T Consensus 135 e~~~~~~~~~~~~e~--------------~~~a~~~~~~al~~~~~~~~~~~~la~~~l~----~g~~e~A~~------- 189 (304)
T COG3118 135 EEALAEAKELIEAED--------------FGEAAPLLKQALQAAPENSEAKLLLAECLLA----AGDVEAAQA------- 189 (304)
T ss_pred HHHHHHhhhhhhccc--------------hhhHHHHHHHHHHhCcccchHHHHHHHHHHH----cCChHHHHH-------
Confidence 344555666777888 9999999999999999999999999999999 999999884
Q ss_pred HHHHHHhcCCCCHHHHHHHH-----HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 239 NYEKAVQLNWNSPQALNNWG-----LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 239 ~~~~Al~l~P~~~~a~~~lg-----~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
.+ ...|.+...--..+ ..+.+.... .+ +..+++.+..+|++..+-+.|+..|...|+
T Consensus 190 iL----~~lP~~~~~~~~~~l~a~i~ll~qaa~~----------~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~ 251 (304)
T COG3118 190 IL----AALPLQAQDKAAHGLQAQIELLEQAAAT----------PE-IQDLQRRLAADPDDVEAALALADQLHLVGR 251 (304)
T ss_pred HH----HhCcccchhhHHHHHHHHHHHHHHHhcC----------CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 33 23343322211111 223333332 21 245677788899999999999999999998
No 288
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=1.5 Score=49.38 Aligned_cols=57 Identities=11% Similarity=0.048 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
-+.+..|..+|.+..+.|. ..+|++.|-+| +++..|.+.-.+..+ .|.|++-+..+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~--------------v~dAieSyika-----dDps~y~eVi~~a~~----~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGL--------------VKDAIESYIKA-----DDPSNYLEVIDVASR----TGKYEDLVKYLL 1157 (1666)
T ss_pred hCChHHHHHHHHHHHhcCc--------------hHHHHHHHHhc-----CCcHHHHHHHHHHHh----cCcHHHHHHHHH
Confidence 4668899999999999999 99999999776 667777777777777 888888776553
No 289
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.39 E-value=0.22 Score=40.13 Aligned_cols=66 Identities=20% Similarity=0.071 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHhcCc
Q 010864 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS--PQALNNWGLALQELSAI 267 (498)
Q Consensus 191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~--~~a~~~lg~~l~~~g~~ 267 (498)
.+..++++++.+|++..+.+.++..+.. .|++++|+ ..+-.+++.++++ ..+...+=.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~----~g~~e~Al-------~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA----AGDYEEAL-------DQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH----TT-HHHHH-------HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH----CCCHHHHH-------HHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 4677899999999999999999999999 99999999 5778888888765 56666666677777765
No 290
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.37 Score=51.08 Aligned_cols=126 Identities=17% Similarity=0.069 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 189 EEACKKYDEATRLCPTLHDAFYN--WAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 189 ~~A~~~~~~Al~l~p~~~~a~~~--lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
.-++..+...+.+++.+...+.. +...+.. .+....+. ...+.++..+|.+..+..|||.++...|.
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~----~~~~~~~~-------~~~~~~l~~~~~~~~~~~~L~~ale~~~~ 116 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAP----LADSTLAF-------LAKRIPLSVNPENCPAVQNLAAALELDGL 116 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccc----cccchhHH-------HHHhhhHhcCcccchHHHHHHHHHHHhhh
Confidence 33677777777788888776433 4677777 78886666 58899999999999999999999998887
Q ss_pred cchHHhhhhhHHHHHHHHH-HHHHhcCCCHHHHHHH------HHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHH
Q 010864 267 IVPAREKQTIVRTAISKFR-AAIQLQFDFHRAIYNL------GTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAA 339 (498)
Q Consensus 267 ~~~a~~~~~~~~~Ai~~~~-~Al~l~P~~~~a~~~L------g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 339 (498)
. -.++..+. -+....|++......+ |..+..+++ -.++..++.+
T Consensus 117 ~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~l~~ 167 (620)
T COG3914 117 Q----------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR-------------------TAEAELALER 167 (620)
T ss_pred H----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc-------------------HHHHHHHHHH
Confidence 6 55555444 4999999999888777 444444444 4667777788
Q ss_pred HHhcCCCHHHHHHHH
Q 010864 340 AHALKPSYSVYSSAL 354 (498)
Q Consensus 340 Al~l~p~~~~~~~~l 354 (498)
+..+.|.+.+...++
T Consensus 168 ~~d~~p~~~~~~~~~ 182 (620)
T COG3914 168 AVDLLPKYPRVLGAL 182 (620)
T ss_pred HHHhhhhhhhhHhHH
Confidence 888888887544443
No 291
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.35 E-value=0.22 Score=40.19 Aligned_cols=70 Identities=24% Similarity=0.165 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 010864 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--HDAFYNWAIAISDRA 220 (498)
Q Consensus 143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--~~a~~~lg~~~~~~~ 220 (498)
.+..+++.++.+|++.++.+.+|..+...|+ +++|++.+-..++.++++ -.+...+=.++..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~--------------~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-- 70 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGD--------------YEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-- 70 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHhCccccccHHHHHHHHHHHH--
Confidence 4677899999999999999999999999999 999999999999998875 4455555555555
Q ss_pred HHcCCHHHHH
Q 010864 221 KMRGRTKEAE 230 (498)
Q Consensus 221 ~~~g~~~eA~ 230 (498)
+|.-+.-.
T Consensus 71 --lg~~~plv 78 (90)
T PF14561_consen 71 --LGPGDPLV 78 (90)
T ss_dssp --H-TT-HHH
T ss_pred --cCCCChHH
Confidence 66654444
No 292
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.31 E-value=0.014 Score=49.72 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=54.9
Q ss_pred hccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCccccccc--ccCCCC
Q 010864 368 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSA--CADLTL 445 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 445 (498)
.|||+.-. ..+.-..|+++||+|...-+.....++... ...+...|+|........ +-.-.-
T Consensus 4 ~GfL~~~q---~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-------------~~~Plg~I~L~~c~~~~v~~~~r~~c 67 (122)
T cd01263 4 HGFLTMFE---DTSGFGAWHRRWCALEGGEIKYWKYPDDEK-------------RKGPTGLIDLSTCTSSEGASAVRDIC 67 (122)
T ss_pred ceeEEEEe---ccCCCCCceEEEEEEeCCEEEEEcCCCccc-------------cCCceEEEEhhhCcccccccCChhhc
Confidence 46666421 113456999999999865554444333210 012344566665443322 222234
Q ss_pred CCCCeeeEeecCCc--------------------eeeeecChhhhhhHHHHHH
Q 010864 446 PPGAGLCIETIHGP--------------------VFLVADSWEALDGWLDAIR 478 (498)
Q Consensus 446 p~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~a~~ 478 (498)
|+.++|.+++.+-. +||-||+.++++.|+.||.
T Consensus 68 ~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain 120 (122)
T cd01263 68 ARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN 120 (122)
T ss_pred CCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence 56666666643211 5888999999999999985
No 293
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.30 E-value=0.87 Score=45.91 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=80.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864 192 CKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (498)
Q Consensus 192 ~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~-~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a 270 (498)
..-|++.++-+|++..+|..+...-......... ..+.....+.-+..|++||+.+|++...+..+=.+..+.-..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~--- 81 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS--- 81 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---
Confidence 3468889999999999999988776662111111 444555677888999999999999999998888888888777
Q ss_pred HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864 271 REKQTIVRTAISKFRAAIQLQFDFHRAIYNL 301 (498)
Q Consensus 271 ~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~L 301 (498)
++....+++++..+|++...|...
T Consensus 82 -------~~l~~~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 82 -------EKLAKKWEELLFKNPGSPELWREY 105 (321)
T ss_pred -------HHHHHHHHHHHHHCCCChHHHHHH
Confidence 888999999999999999888654
No 294
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.26 E-value=0.019 Score=46.17 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=51.4
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceee
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL 462 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 462 (498)
...|.++||+|....+..+....... ......|++... ++..+.+.. -..+.|.|.|...+.+|
T Consensus 13 ~~~W~kr~~~L~~~~l~~y~~~~~~~--------------~~~~~~i~l~~~-~v~~~~~~~-~~~~~f~i~~~~~~~~f 76 (94)
T cd01250 13 NKEWKKRWFVLKNGQLTYHHRLKDYD--------------NAHVKEIDLRRC-TVRHNGKQP-DRRFCFEVISPTKTWHF 76 (94)
T ss_pred CCCceEEEEEEeCCeEEEEcCCcccc--------------cccceEEeccce-EEecCcccc-CCceEEEEEcCCcEEEE
Confidence 45799999999876666543322110 112233555432 233322211 14678888887777799
Q ss_pred eecChhhhhhHHHHHHH
Q 010864 463 VADSWEALDGWLDAIRL 479 (498)
Q Consensus 463 ~~~~~~~~~~~~~a~~~ 479 (498)
.|+|.+++..|++||+.
T Consensus 77 ~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 77 QADSEEERDDWISAIQE 93 (94)
T ss_pred ECCCHHHHHHHHHHHhc
Confidence 99999999999999963
No 295
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.26 E-value=0.55 Score=39.60 Aligned_cols=89 Identities=20% Similarity=0.162 Sum_probs=65.9
Q ss_pred HHhhccHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 134 RSRQRILTFAAKRYANAIERNPE------------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
....|.|++|...|.++....-. ++-+|..|+.++..+|+ |++++..-+++|..
T Consensus 19 ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr--------------y~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 19 QLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR--------------YDECLQSADRALRY 84 (144)
T ss_dssp HHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHH
Confidence 34568899999999999887532 34568899999999999 99988888888875
Q ss_pred -------CCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 202 -------CPTLH----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 202 -------~p~~~----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
+.+.. .+.++.+.++.. +|+.++|++.|+.|.+..
T Consensus 85 FNRRGEL~qdeGklWIaaVfsra~Al~~----~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 85 FNRRGELHQDEGKLWIAAVFSRAVALEG----LGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHH--TTSTHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHH
T ss_pred HhhccccccccchhHHHHHHHHHHHHHh----cCChHHHHHHHHHHHHHH
Confidence 54433 455788999999 999999996555554433
No 296
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.23 E-value=4.1 Score=41.47 Aligned_cols=174 Identities=19% Similarity=0.066 Sum_probs=104.6
Q ss_pred hhhcHHHHHHHHHHhhhcch------hhH----HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCC-----
Q 010864 112 LAEQNNAAMELINSVTGVDE------EGR----SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVS----- 176 (498)
Q Consensus 112 ~~~~~~~A~~~~~~~~~~~~------~~~----~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~----- 176 (498)
..|+++.|..-|+..+..-. .|+ .++|..+.|+.+-+++...-|..+.++...=......|++..
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 34667777777766554331 111 356888888888888888888887777666556666666200
Q ss_pred ----------CCCC------------CCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 177 ----------LDST------------SPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 177 ----------~~~~------------~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
++.. ...-+.+...|...-.+++++.|+...+-..-+.+|+. .|+..++-
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~----d~~~rKg~---- 283 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR----DGNLRKGS---- 283 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh----ccchhhhh----
Confidence 0000 01112335666777777778888887777777778887 88888887
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHcchh
Q 010864 235 QATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ---LQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 235 ~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~---l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
..++.+-+.+|.- + ++.+|.....- +.++.-++++-+ +.|++.+....++.+-+.-|+.
T Consensus 284 ---~ilE~aWK~ePHP-~----ia~lY~~ar~g----------dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 284 ---KILETAWKAEPHP-D----IALLYVRARSG----------DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred ---hHHHHHHhcCCCh-H----HHHHHHHhcCC----------CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccch
Confidence 5666666666632 2 22223322222 334444444433 4677777777777766666654
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.20 E-value=1.9 Score=38.57 Aligned_cols=83 Identities=17% Similarity=0.042 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
..+..+..+-.. .++.+++. ..+...--+.|+.+..-..-|.++...|++ .+|+..|+.
T Consensus 11 ~gLie~~~~al~----~~~~~D~e-------~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~ 69 (160)
T PF09613_consen 11 GGLIEVLSVALR----LGDPDDAE-------ALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLRE 69 (160)
T ss_pred HHHHHHHHHHHc----cCChHHHH-------HHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHH
Confidence 345555555555 78888888 577767788999999999999999999999 999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcch
Q 010864 287 AIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 287 Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
..+-.|.++.+--.++.|++.+|+
T Consensus 70 l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 70 LEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HhccCCCChHHHHHHHHHHHHcCC
Confidence 999999999999999999999997
No 298
>PRK10941 hypothetical protein; Provisional
Probab=95.13 E-value=0.16 Score=49.71 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
....||=.+|.+ .++++.|+ ++.++.+.++|+++.-+...|.+|.++|.+ ..|...++.
T Consensus 182 Rml~nLK~~~~~----~~~~~~AL-------~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~ 240 (269)
T PRK10941 182 KLLDTLKAALME----EKQMELAL-------RASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSY 240 (269)
T ss_pred HHHHHHHHHHHH----cCcHHHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHH
Confidence 345666667777 88888888 799999999999999999999999999999 999999999
Q ss_pred HHHhcCCCHHHHHHH
Q 010864 287 AIQLQFDFHRAIYNL 301 (498)
Q Consensus 287 Al~l~P~~~~a~~~L 301 (498)
-++..|+++.+-.-.
T Consensus 241 fl~~~P~dp~a~~ik 255 (269)
T PRK10941 241 FVEQCPEDPISEMIR 255 (269)
T ss_pred HHHhCCCchhHHHHH
Confidence 999999998765543
No 299
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.06 E-value=0.14 Score=36.87 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
+.+|.++..+.+ +|+|.+|. .+.+.+|+.+|+|.++......+-.
T Consensus 2 d~lY~lAig~yk----l~~Y~~A~-------~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 2 DCLYYLAIGHYK----LGEYEKAR-------RYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHHHHHHHH----TT-HHHHH-------HHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH----hhhHHHHH-------HHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 468899999999 99999999 7999999999999999877666543
No 300
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.04 E-value=0.15 Score=48.10 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC------CCH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNW-NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF------DFH 295 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P------~~~ 295 (498)
...+++|++.|.-|+-.++. ...+| .-+..+..++++|..+|+. .....-+..|...|++|++... +..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 45778888877777766542 22222 2467788999999999986 5566677889999999987642 235
Q ss_pred HHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 296 RAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 296 ~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
.+.|.+|.+..++|+ +++|..+|.+.+.......
T Consensus 166 ~l~YLigeL~rrlg~-------------------~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 166 TLLYLIGELNRRLGN-------------------YDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCC-------------------HHHHHHHHHHHHcCCCCCC
Confidence 789999999999999 8999999999988755444
No 301
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=95.04 E-value=0.027 Score=45.60 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=61.5
Q ss_pred CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCC----CCCCCCeeeEeecC
Q 010864 382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADL----TLPPGAGLCIETIH 457 (498)
Q Consensus 382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~~~~ 457 (498)
....|+++||+|....+.-...... .........|++.++ .+....+. ..+..+.|.+.+..
T Consensus 13 ~~~~wk~r~~vL~~~~L~~~~~~~~-------------~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~ 78 (104)
T PF00169_consen 13 SRKKWKKRYFVLRDSYLLYYKSSKD-------------KSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPN 78 (104)
T ss_dssp SSSSEEEEEEEEETTEEEEESSTTT-------------TTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETT
T ss_pred CCCCeEEEEEEEECCEEEEEecCcc-------------ccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCC
Confidence 3468999999998866654333221 011234567777777 55544444 46689999999888
Q ss_pred C-ceeeeecChhhhhhHHHHHHHH
Q 010864 458 G-PVFLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 458 ~-~~~~~~~~~~~~~~~~~a~~~~ 480 (498)
+ ..+|.++|.+++..|.++|..+
T Consensus 79 ~~~~~~~~~s~~~~~~W~~~i~~~ 102 (104)
T PF00169_consen 79 GKSYLFSAESEEERKRWIQAIQKA 102 (104)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHH
Confidence 8 6799999999999999999876
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=1.8 Score=39.89 Aligned_cols=97 Identities=11% Similarity=0.036 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
..++..+.+ .|++++|+ ..++.++..-.+ -.-+-.+|+.++.++|++ ++|+..+..
T Consensus 93 L~lAk~~ve----~~~~d~A~-------aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~----------D~AL~~L~t 151 (207)
T COG2976 93 LELAKAEVE----ANNLDKAE-------AQLKQALAQTKDENLKALAALRLARVQLQQKKA----------DAALKTLDT 151 (207)
T ss_pred HHHHHHHHh----hccHHHHH-------HHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhc
Confidence 455666777 89999988 466666543322 235667899999999999 999888765
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH
Q 010864 287 AIQLQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS 348 (498)
Q Consensus 287 Al~l~P~~-~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 348 (498)
.. ++++ +......|.++...|+ -.+|...|++++...++..
T Consensus 152 ~~--~~~w~~~~~elrGDill~kg~-------------------k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 152 IK--EESWAAIVAELRGDILLAKGD-------------------KQEARAAYEKALESDASPA 193 (207)
T ss_pred cc--cccHHHHHHHHhhhHHHHcCc-------------------hHHHHHHHHHHHHccCChH
Confidence 43 2232 2334557999999998 6889999999999985544
No 303
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.97 E-value=0.23 Score=51.69 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA- 266 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~- 266 (498)
..+-...|+.|+...+.+...|.+...-..+ .+.+.+-- ..|.+++..+|+++..|..-+.-....+.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk----~~~~~~v~-------ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKK----KKTYGEVK-------KIFAAMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hcchhHHH-------HHHHHHHHhCCCCchhHHhhhhhHHhhccc
Confidence 5566778999999999999999988776666 66566655 69999999999999999999988888776
Q ss_pred cchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 267 IVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (498)
Q Consensus 267 ~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 300 (498)
. +.|...|.++|+.+|+.+..|..
T Consensus 156 i----------~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 156 I----------ESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred h----------HHHHHHHHHHhhcCCCChHHHHH
Confidence 5 99999999999999999988754
No 304
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.86 E-value=0.16 Score=52.94 Aligned_cols=79 Identities=27% Similarity=0.240 Sum_probs=70.8
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
......|+..|.+++...|.....+.+++.++...+= .++.-.|+.....|++++|....+|+.|+.++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW-----------~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKW-----------RGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhc-----------cccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999987653 12267799999999999999999999999999
Q ss_pred HHHHHHcCCHHHHH
Q 010864 217 SDRAKMRGRTKEAE 230 (498)
Q Consensus 217 ~~~~~~~g~~~eA~ 230 (498)
.. ++++.+|+
T Consensus 456 ~e----l~r~~eal 465 (758)
T KOG1310|consen 456 NE----LTRYLEAL 465 (758)
T ss_pred HH----HhhHHHhh
Confidence 99 99999999
No 305
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.80 E-value=0.62 Score=53.23 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=87.3
Q ss_pred CchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864 182 PSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (498)
Q Consensus 182 ~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg 258 (498)
.....+|++|+..|++.-.-.|+. .++.+..|.++..++...|+. ..|.+|+..|++. .-.|.-+--|...+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 485 FLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred HHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 345678999999999999999874 478899999999866655654 5677777888864 34466677788888
Q ss_pred HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcc
Q 010864 259 LALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLA 309 (498)
Q Consensus 259 ~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g 309 (498)
.+|+++|++ ++-+++|.-|++.-|+++.+-.-.-.+.+++.
T Consensus 560 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 560 LVYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 999999999 99999999999998888765444444444443
No 306
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.77 E-value=0.35 Score=50.32 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010864 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (498)
Q Consensus 143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~ 222 (498)
-...|+.|+...+.|...|.+........+. +.+--..|.+++..+|++++.|..-+.-.+.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------------~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe---- 151 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------------YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE---- 151 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------------hhHHHHHHHHHHHhCCCCchhHHhhhhhHHh----
Confidence 3468999999999999999999888888887 8999999999999999999999988877777
Q ss_pred cCC-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 010864 223 RGR-TKEAEELWKQATKNYEKAVQLNWNSPQALNN 256 (498)
Q Consensus 223 ~g~-~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~ 256 (498)
.+. .+.|. ..|.++|+.+|+++..|.-
T Consensus 152 ~n~ni~saR-------alflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 152 INLNIESAR-------ALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred hccchHHHH-------HHHHHHhhcCCCChHHHHH
Confidence 655 55555 7999999999999887653
No 307
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.58 E-value=0.032 Score=44.51 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=49.1
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC-ceee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG-PVFL 462 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~ 462 (498)
..|.++||+|....+..+....... ......|+|.+.. ++.. .. ..+.|.|.|..+ .++|
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~--------------~~~~~~i~l~~~~-~~~~--~~--~~~~F~i~~~~~~~~~~ 73 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMR--------------GKPRGTILLSGAV-ISED--DS--DDKCFTIDTGGDKTLHL 73 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCC--------------CCceEEEEeceEE-EEEC--CC--CCcEEEEEcCCCCEEEE
Confidence 5899999999876665544332210 1122334444321 2211 11 257899988774 5689
Q ss_pred eecChhhhhhHHHHHHH
Q 010864 463 VADSWEALDGWLDAIRL 479 (498)
Q Consensus 463 ~~~~~~~~~~~~~a~~~ 479 (498)
.|+|.+++..|+.||+-
T Consensus 74 ~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 74 RANSEEERQRWVDALEL 90 (91)
T ss_pred ECCCHHHHHHHHHHHHh
Confidence 99999999999999974
No 308
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.45 E-value=0.17 Score=36.41 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~ 304 (498)
+.++.++..+.++|+| ++|..+.+.+|+++|++..+..-...+
T Consensus 2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678999999999999 999999999999999998876655444
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.44 E-value=1.5 Score=44.93 Aligned_cols=87 Identities=20% Similarity=0.195 Sum_probs=70.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--c-----C------------CCC---HHHHHH
Q 010864 199 TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--L-----N------------WNS---PQALNN 256 (498)
Q Consensus 199 l~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~--l-----~------------P~~---~~a~~~ 256 (498)
|..+|-+.+++..++.++.. +|+...|.++.++|+-.|++++. . + +.| -.+++.
T Consensus 33 l~~~PyHidtLlqls~v~~~----~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r 108 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQ----QGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR 108 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence 34589999999999999999 99999999999999999998862 2 2 122 244666
Q ss_pred HHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-CHHHHH
Q 010864 257 WGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIY 299 (498)
Q Consensus 257 lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~ 299 (498)
....+.+.|-+ ..|.++.+-.+.++|. |+-...
T Consensus 109 ~i~~L~~RG~~----------rTAlE~~KlLlsLdp~~DP~g~l 142 (360)
T PF04910_consen 109 YIQSLGRRGCW----------RTALEWCKLLLSLDPDEDPLGVL 142 (360)
T ss_pred HHHHHHhcCcH----------HHHHHHHHHHHhcCCCCCcchhH
Confidence 66777788888 9999999999999999 765433
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.34 E-value=0.08 Score=35.24 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
+.++++||.+|..+|++ ++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRY----------EEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHHH
Confidence 46899999999999999 99999999999873
No 311
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.12 E-value=8.4 Score=40.04 Aligned_cols=135 Identities=16% Similarity=0.051 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH--HHH--HHHHHHHHhcCC---CCHHHHHHHHHH
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW--KQA--TKNYEKAVQLNW---NSPQALNNWGLA 260 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~--~~A--l~~~~~Al~l~P---~~~~a~~~lg~~ 260 (498)
-++|+..++.+++..+.+..+.+..-. +.+ ..|.+|+... .+- +..|-.-+.+-| .+.+.-|.|+.+
T Consensus 396 dekalnLLk~il~ft~yD~ec~n~v~~-fvK-----q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECENIVFL-FVK-----QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHH-HHH-----HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 567788888888888777655433222 222 2333333110 000 011111122223 356666777655
Q ss_pred --HHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH
Q 010864 261 --LQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA 338 (498)
Q Consensus 261 --l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 338 (498)
++..|+| .++.-+-.-..++.| .+.++.-+|.|++...+ |.+|-.|+.
T Consensus 470 EyLysqgey----------~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~-------------------Y~eA~~~l~ 519 (549)
T PF07079_consen 470 EYLYSQGEY----------HKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR-------------------YQEAWEYLQ 519 (549)
T ss_pred HHHHhcccH----------HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh-------------------HHHHHHHHH
Confidence 5667887 999999888999999 79999999999999998 999998864
Q ss_pred HHHhcCCCHH----HHHHHHHHHHccC
Q 010864 339 AAHALKPSYS----VYSSALRLVRSML 361 (498)
Q Consensus 339 ~Al~l~p~~~----~~~~~l~~~~~~l 361 (498)
.+-|++. ....++.+....+
T Consensus 520 ---~LP~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 520 ---KLPPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred ---hCCCchhhHHHHHHHHHHHHHHhh
Confidence 4556544 4556666655443
No 312
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=2.1 Score=41.18 Aligned_cols=120 Identities=11% Similarity=0.038 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
-.+|+..-..++.++|.+.-+|...-.++..+ ..+..+-+ .+..+.++-+|+|-+.|...-.+...+|+.
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l---~~dL~~El-------~~l~eI~e~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHL---MSDLNKEL-------EYLDEIIEDNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHh---HHHHHHHH-------HHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence 56788888889999999999888877777761 23344444 789999999999999999999999999998
Q ss_pred chHHhhhhhHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCC
Q 010864 268 VPAREKQTIVR-TAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPS 346 (498)
Q Consensus 268 ~~a~~~~~~~~-~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 346 (498)
. .-+.+.+.++..+..+-.+|...-.++...+. ++.-..|....++.+--
T Consensus 129 ----------s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~-------------------~~~EL~y~~~Lle~Di~ 179 (318)
T KOG0530|consen 129 ----------SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD-------------------YEDELAYADELLEEDIR 179 (318)
T ss_pred ----------ccchHHHHHHHHhccccchhhhHHHHHHHHHHhh-------------------HHHHHHHHHHHHHHhhh
Confidence 6 77889999999999999999999999988886 66666666666665543
No 313
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.00 E-value=3.5 Score=40.58 Aligned_cols=124 Identities=17% Similarity=0.007 Sum_probs=84.6
Q ss_pred HhhccHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHhc-CcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864 135 SRQRILTFAAKRYANAIERN-PED-------YDALYNWALVLQESA-DNVSLDSTSPSKDALLEEACKKYDEATRL---- 201 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~-P~~-------~~a~~~lg~~~~~~g-~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---- 201 (498)
.++|+++.|..+|.++-... ..+ .+.+|+.|......+ + ++.|+..+++|+++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~--------------~~~a~~wL~~a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK--------------YEEAVKWLQRAYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC--------------hHHHHHHHHHHHHHHHhh
Confidence 46899999999999986654 333 345677777777777 6 99999999999988
Q ss_pred CC------C----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHH
Q 010864 202 CP------T----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAR 271 (498)
Q Consensus 202 ~p------~----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~ 271 (498)
.. + ...++..|+.+|.. .+.++. +++|....+.+-.-.|+.+..+...=.++.+.++.
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~----~~~~~~----~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~---- 137 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLE----WDTYES----VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE---- 137 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHc----CCChHH----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh----
Confidence 21 1 12456777777777 776643 33455566655556677666664444455556777
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q 010864 272 EKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 272 ~~~~~~~~Ai~~~~~Al~l 290 (498)
+++.+.+.+.+.-
T Consensus 138 ------~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 138 ------EEYEEILMRMIRS 150 (278)
T ss_pred ------hHHHHHHHHHHHh
Confidence 7777788877765
No 314
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.82 E-value=0.095 Score=49.18 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=54.4
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 206 (498)
...++.+.|.+.|.+++++-|+....|+.+|......|+ ++.|.+.|++.++++|.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~--------------~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE--------------FDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc--------------HHHHHHHHHHHHcCCcccc
Confidence 346888999999999999999999999999999999999 9999999999999999864
No 315
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.75 Score=46.90 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=109.6
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
++..+++-+.+...++..+|+...+|+.+-.++...+. .++..=+..+.++++.+|.+..+|...=.+
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~------------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV 154 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH------------SDWNTELQLCEKALKQDPRNFHAWHYRRFV 154 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC------------chHHHHHHHHHHHHhcCcccccchHHHHHH
Confidence 34567888899999999999999999999999998776 137888999999999999998888776666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH--HhhhhhHHHHHHHHHHHHHhcCC
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA--REKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a--~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
+.. ..+. ..+..+-+.+..+++.-++.|-.+|.+...++..+-.-+.- .-....+..-+..-..|+-.+|+
T Consensus 155 ~~~----~~~~---~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 155 VEQ----AERS---RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred HHH----Hhcc---cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 554 2222 01222234688999999999999999999998854322100 11233456667778888889999
Q ss_pred CHHHHHH
Q 010864 294 FHRAIYN 300 (498)
Q Consensus 294 ~~~a~~~ 300 (498)
+..+|+.
T Consensus 228 DqS~WfY 234 (421)
T KOG0529|consen 228 DQSCWFY 234 (421)
T ss_pred ccceeee
Confidence 9999887
No 316
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.73 E-value=0.097 Score=49.12 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSP 251 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~ 251 (498)
+.+.|.+.|.+++++.|.....|+.+|....+ .|+++.|. +.|++.++++|.+.
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ek----ag~~daAa-------~a~~~~L~ldp~D~ 63 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEK----AGEFDAAA-------AAYEEVLELDPEDH 63 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhh----cccHHHHH-------HHHHHHHcCCcccc
Confidence 49999999999999999999999999999988 99999988 79999999999764
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.68 E-value=5 Score=35.89 Aligned_cols=84 Identities=18% Similarity=0.023 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATK 238 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~ 238 (498)
.++..+..+-...++ .+++...+...--+.|+....-..-|..+.. .|++.+|+ .
T Consensus 11 ~gLie~~~~al~~~~--------------~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~----r~~w~dA~-------r 65 (160)
T PF09613_consen 11 GGLIEVLSVALRLGD--------------PDDAEALLDALRVLRPEFPELDLFDGWLHIV----RGDWDDAL-------R 65 (160)
T ss_pred HHHHHHHHHHHccCC--------------hHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----hCCHHHHH-------H
Confidence 345555666666667 9999999999999999999999999999999 99999999 7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 239 NYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 239 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
.++...+-.|..+.+--.++.|++.+|+.
T Consensus 66 lLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 66 LLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 88988888899999999999999999985
No 318
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.45 E-value=1.9 Score=37.29 Aligned_cols=84 Identities=21% Similarity=0.216 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHHcchhHHhccCCCCCCCCChh
Q 010864 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ-LQFDF-HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPN 327 (498)
Q Consensus 250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~-l~P~~-~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~ 327 (498)
..+..+++++++....+. .+.++.|..++..++ -+|.. -+..|.|+..++++++
T Consensus 31 s~~s~f~lAwaLV~S~~~-------~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlke----------------- 86 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT-------EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKE----------------- 86 (149)
T ss_pred hHHHHHHHHHHHHcccch-------HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhh-----------------
Confidence 678899999999877664 566899999999997 45543 4678889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 010864 328 ELYSQSAIYIAAAHALKPSYSVYSSALRLVRS 359 (498)
Q Consensus 328 ~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~~ 359 (498)
|+.+..|....++..|+|.+....-..+.+
T Consensus 87 --Y~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364|consen 87 --YSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred --HHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 999999999999999999976665555443
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.45 E-value=5 Score=42.93 Aligned_cols=165 Identities=9% Similarity=-0.050 Sum_probs=118.9
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCCHHHHHHHH
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTLHDAFYNWA 213 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~~~a~~~lg 213 (498)
...|+++...-.|++++--...+.+.|...+.-....|+ .+-|-..+.++.++ .|+.+..+...+
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~--------------~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD--------------VSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc--------------hhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 457889999999999998888899999999999998888 88888888888887 455666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh-cC
Q 010864 214 IAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL-QF 292 (498)
Q Consensus 214 ~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l-~P 292 (498)
..-.. .|++..|. ..+++...--|+...+-........++|.. +.+.. +...+.. .+
T Consensus 374 ~f~e~----~~n~~~A~-------~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~----------~~~~~-~~~l~s~~~~ 431 (577)
T KOG1258|consen 374 RFEES----NGNFDDAK-------VILQRIESEYPGLVEVVLRKINWERRKGNL----------EDANY-KNELYSSIYE 431 (577)
T ss_pred HHHHh----hccHHHHH-------HHHHHHHhhCCchhhhHHHHHhHHHHhcch----------hhhhH-HHHHHHHhcc
Confidence 66666 88999888 688888766699888888888888888887 66653 2222222 11
Q ss_pred --CC----HHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864 293 --DF----HRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353 (498)
Q Consensus 293 --~~----~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~ 353 (498)
.+ ...+.+.+...+...+ ....|...+.+++...|++......
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~------------------d~~~a~~~l~~~~~~~~~~k~~~~~ 480 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIRE------------------DADLARIILLEANDILPDCKVLYLE 480 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc------------------CHHHHHHHHHHhhhcCCccHHHHHH
Confidence 11 2333334443333322 1467788888999999998854433
No 320
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.45 E-value=0.41 Score=46.36 Aligned_cols=69 Identities=17% Similarity=0.120 Sum_probs=61.7
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFY 210 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~ 210 (498)
...+.+.++++.|..+.++.+.++|.++.-+..+|.+|.++|- +.-|+..++..++..|+.+.+-.
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c--------------~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC--------------YHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC--------------chhhHHHHHHHHHhCCCchHHHH
Confidence 3346778999999999999999999999999999999999999 99999999999999999877654
Q ss_pred HHH
Q 010864 211 NWA 213 (498)
Q Consensus 211 ~lg 213 (498)
-..
T Consensus 254 ir~ 256 (269)
T COG2912 254 IRA 256 (269)
T ss_pred HHH
Confidence 433
No 321
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.37 E-value=0.085 Score=45.30 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=46.4
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCC-----
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHG----- 458 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----- 458 (498)
..|.++||+|....|........ ......|+|.++ .+..+.+.. ..+.|.+.+..+
T Consensus 14 ~~WkkRwfvL~~~~L~yyk~~~~----------------~~~~g~I~L~~~-~v~~~~~~~--~~~~F~i~~~~~~~~i~ 74 (125)
T cd01252 14 KTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLENV-SIREVEDPS--KPFCFELFSPSDKQQIK 74 (125)
T ss_pred CCeEeEEEEEECCEEEEEcCCCC----------------CCceEEEECCCc-EEEEcccCC--CCeeEEEECCccccccc
Confidence 57999999998766654332211 112445666643 344433322 223444433222
Q ss_pred ---------------ce-eeeecChhhhhhHHHHHHHH
Q 010864 459 ---------------PV-FLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 459 ---------------~~-~~~~~~~~~~~~~~~a~~~~ 480 (498)
.+ ||.|+|.+++..|++||+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~ 112 (125)
T cd01252 75 ACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKAS 112 (125)
T ss_pred cccccccccccccCceEEEEECCCHHHHHHHHHHHHHH
Confidence 34 48899999999999999754
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.32 E-value=2.2 Score=36.96 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-LCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQ 235 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-l~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~ 235 (498)
....+++++++....+ ..+..+.+..++..++ -+|. .-+..|.|+..+.+ .++|+.++
T Consensus 32 ~~s~f~lAwaLV~S~~-----------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR----lkeY~~s~----- 91 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRD-----------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR----LKEYSKSL----- 91 (149)
T ss_pred HHHHHHHHHHHHcccc-----------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH----HhhHHHHH-----
Confidence 4667888888877655 3458899999999997 5565 45688999999999 89988888
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 010864 236 ATKNYEKAVQLNWNSPQALNNWGLALQE 263 (498)
Q Consensus 236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~ 263 (498)
.+.+..++.+|+|.++.-..-.+.-+
T Consensus 92 --~yvd~ll~~e~~n~Qa~~Lk~~ied~ 117 (149)
T KOG3364|consen 92 --RYVDALLETEPNNRQALELKETIEDK 117 (149)
T ss_pred --HHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 79999999999999887655554443
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=2.5 Score=44.05 Aligned_cols=137 Identities=18% Similarity=0.118 Sum_probs=95.4
Q ss_pred HHhhccHHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC
Q 010864 134 RSRQRILTFAAKRYANAIERN---PE-------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP 203 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~---P~-------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p 203 (498)
..-.|++.+|++....+.+.. |. .+..++.+|..-..-+. |+.|...|..|+++-.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~--------------~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNC--------------YENAEFHFIEATKLTE 398 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcch--------------HHHHHHHHHHHHHhhh
Confidence 455799999998888877654 44 35567788887777787 9999999999999844
Q ss_pred C-C--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCC----------HHHHHHHHHHHHHhcCcch
Q 010864 204 T-L--HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNS----------PQALNNWGLALQELSAIVP 269 (498)
Q Consensus 204 ~-~--~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~----------~~a~~~lg~~l~~~g~~~~ 269 (498)
. + +.+..|++.+|.. .|+-+.- .+++ .+.|.| ..+++-.|.....++++
T Consensus 399 ~~dl~a~~nlnlAi~YL~----~~~~ed~-----------y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~l-- 461 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLR----IGDAEDL-----------YKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDL-- 461 (629)
T ss_pred HHHHHHHHHHhHHHHHHH----hccHHHH-----------HHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccH--
Confidence 3 3 4456788999988 7764432 2233 234442 34566667777777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHcchh
Q 010864 270 AREKQTIVRTAISKFRAAIQLQFDFHR--------AIYNLGTVLYGLAED 311 (498)
Q Consensus 270 a~~~~~~~~~Ai~~~~~Al~l~P~~~~--------a~~~Lg~~~~~~g~~ 311 (498)
.||....++.++.. +++ .+.-||.+....|+.
T Consensus 462 --------nEaK~~l~e~Lkma--naed~~rL~a~~LvLLs~v~lslgn~ 501 (629)
T KOG2300|consen 462 --------NEAKRFLRETLKMA--NAEDLNRLTACSLVLLSHVFLSLGNT 501 (629)
T ss_pred --------HHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999886 233 344566777777753
No 324
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=93.16 E-value=2.9 Score=45.66 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHHH----------hcCCC-CHHHHHHHHHHHHHhcCcch
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELW------KQATKNYEKAV----------QLNWN-SPQALNNWGLALQELSAIVP 269 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~------~~Al~~~~~Al----------~l~P~-~~~a~~~lg~~l~~~g~~~~ 269 (498)
..|...+.-+.. .|+|.+|..+| .+|+.+|.+.- +..|+ -.+++..+|.-|...|+...
T Consensus 825 ~~yiakaedlde----hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lka 900 (1636)
T KOG3616|consen 825 SLYIAKAEDLDE----HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKA 900 (1636)
T ss_pred HHHHHhHHhHHh----hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhH
Confidence 455566666777 99999999888 67888887642 12233 34678889999999999876
Q ss_pred H---HhhhhhHHHHHHHHH
Q 010864 270 A---REKQTIVRTAISKFR 285 (498)
Q Consensus 270 a---~~~~~~~~~Ai~~~~ 285 (498)
| +-+.|+++.|+..|+
T Consensus 901 ae~~flea~d~kaavnmyk 919 (1636)
T KOG3616|consen 901 AEEHFLEAGDFKAAVNMYK 919 (1636)
T ss_pred HHHHHHhhhhHHHHHHHhh
Confidence 6 334566666665543
No 325
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.06 E-value=0.28 Score=47.88 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 010864 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYG 307 (498)
Q Consensus 236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~ 307 (498)
|..+|.+|+.+.|++...++.||.+....|+. =.|+-+|-+++-..--++.+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999 999999999998877779999999999988
No 326
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=92.60 E-value=0.17 Score=40.09 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=58.6
Q ss_pred CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCC-CCCCCeeeEeecCC-c
Q 010864 382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT-LPPGAGLCIETIHG-P 459 (498)
Q Consensus 382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~-~ 459 (498)
....|++++++|....+.-........ .......|++.++ .+....+.. .+...+|.+.+..+ .
T Consensus 14 ~~~~~~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~f~l~~~~~~~ 79 (102)
T smart00233 14 KKKSWKKRYFVLFNSTLLYYKSEKAKK-------------DYKPKGSIDLSGI-TVREAPDPDSAKKPHCFEIKTADRRS 79 (102)
T ss_pred ccCCceEEEEEEECCEEEEEeCCCccc-------------cCCCceEEECCcC-EEEeCCCCccCCCceEEEEEecCCce
Confidence 346799999999875555433222210 0234556777776 555554433 34567888887777 6
Q ss_pred eeeeecChhhhhhHHHHHHHHH
Q 010864 460 VFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 460 ~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
.+|.++|.+++..|.++|+.+.
T Consensus 80 ~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 80 YLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred EEEEcCCHHHHHHHHHHHHHhh
Confidence 7999999999999999998753
No 327
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.41 E-value=0.96 Score=34.99 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~ 264 (498)
..+.-+-. .|++.+|+.+|++|+..+.+++...|++..-......+..-+
T Consensus 11 ~~AVe~D~----~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~ 60 (75)
T cd02682 11 INAVKAEK----EGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYK 60 (75)
T ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 33444445 999999999999999999999999999887655555444433
No 328
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.29 E-value=11 Score=37.51 Aligned_cols=173 Identities=18% Similarity=0.065 Sum_probs=95.7
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC------------
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP------------ 203 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p------------ 203 (498)
+..+-.+-|.....|+++||..+.+|..|+.--... ..+|.+.+++||+...
T Consensus 196 RERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~T----------------i~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 196 RERNPPARIKAAYQALEINNECATAYVLLAEEEATT----------------IVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhh----------------HHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 345556677888899999999999998887643322 5666677776665411
Q ss_pred -----------CCHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCcc
Q 010864 204 -----------TLHDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAIV 268 (498)
Q Consensus 204 -----------~~~~a~--~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~ 268 (498)
.+...| ..|+.+-.+ +|+..||+ +.++...+-.|- -...+-||-.++.++.-|
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARk----lGrlrEA~-------K~~RDL~ke~pl~t~lniheNLiEalLE~QAY- 327 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARK----LGRLREAV-------KIMRDLMKEFPLLTMLNIHENLLEALLELQAY- 327 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHH----hhhHHHHH-------HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-
Confidence 111222 345555555 88888888 466655555552 234556666667666655
Q ss_pred hHHhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcchhHHhccCCCCC-----CCCChhHHHHHHHHHHHHHHh
Q 010864 269 PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNP-----REVSPNELYSQSAIYIAAAHA 342 (498)
Q Consensus 269 ~a~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~A~~~~~~Al~ 342 (498)
..-...+-+-=.+ -|..+.+.|.-+.+-.+.- +....+ ...+. .-..|++.+.+|.+
T Consensus 328 ---------ADvqavLakYDdislPkSA~icYTaALLK~RAV------a~kFspd~asrRGLS~--AE~~AvEAihRAvE 390 (556)
T KOG3807|consen 328 ---------ADVQAVLAKYDDISLPKSAAICYTAALLKTRAV------SEKFSPETASRRGLST--AEINAVEAIHRAVE 390 (556)
T ss_pred ---------HHHHHHHHhhccccCcchHHHHHHHHHHHHHHH------HhhcCchhhhhccccH--HHHHHHHHHHHHhh
Confidence 2222222111111 2444444443332211110 000000 01111 13568888999999
Q ss_pred cCCCHHHHHHH
Q 010864 343 LKPSYSVYSSA 353 (498)
Q Consensus 343 l~p~~~~~~~~ 353 (498)
++|..+.|..-
T Consensus 391 FNPHVPkYLLE 401 (556)
T KOG3807|consen 391 FNPHVPKYLLE 401 (556)
T ss_pred cCCCCcHHHHH
Confidence 99998876544
No 329
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.29 E-value=1.3 Score=51.27 Aligned_cols=122 Identities=17% Similarity=0.046 Sum_probs=92.2
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 010864 142 FAAKRYAN-AIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL--------CPTLHDAFYNW 212 (498)
Q Consensus 142 ~A~~~~~~-al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l--------~p~~~~a~~~l 212 (498)
+++..+.+ .-.+.|.....+..++.++..+++ +++|+..-.+|.-+ .|+....|.++
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d--------------~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD--------------NQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc--------------hHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 34445553 334678899999999999999999 99999998888765 45667788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 213 AIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 213 g~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
+...+. .+....|+..+..|.....-.. +..|.-+....|++.++...+++ +.|+.+.+.|+.+.
T Consensus 1022 al~~f~----~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~----------d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1022 ALYEFA----VKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEA----------DTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHh----ccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHH----------HHHHHHHHHHHHHH
Confidence 988888 8888888854443332221111 23577778889999999999999 99999999999864
No 330
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.06 E-value=8.5 Score=34.97 Aligned_cols=137 Identities=17% Similarity=0.107 Sum_probs=100.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC--C--HHH
Q 010864 135 SRQRILTFAAKRYANAIERNPED--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT--L--HDA 208 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~--~--~~a 208 (498)
.+.+..++|+..|...-.-.-.. .-+.+..|.+..+.|+ -..|+..|..+-.-.|- - -.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd--------------ta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD--------------TAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc--------------HHHHHHHHHHHhccCCCcchhhHHH
Confidence 34577788888888766554332 2356788899999999 99999999998776443 1 234
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV--QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al--~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
...-+.++.+ .|-|++-.. .. ..| .-+|--..+.--||.+-++.|++ ..|...|.+
T Consensus 135 Rlraa~lLvD----~gsy~dV~s-------rv-epLa~d~n~mR~sArEALglAa~kagd~----------a~A~~~F~q 192 (221)
T COG4649 135 RLRAAYLLVD----NGSYDDVSS-------RV-EPLAGDGNPMRHSAREALGLAAYKAGDF----------AKAKSWFVQ 192 (221)
T ss_pred HHHHHHHHhc----cccHHHHHH-------Hh-hhccCCCChhHHHHHHHHhHHHHhccch----------HHHHHHHHH
Confidence 5566777888 899888762 22 223 34455678888999999999999 999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHc
Q 010864 287 AIQLQFDFHRAIYNLGTVLYGL 308 (498)
Q Consensus 287 Al~l~P~~~~a~~~Lg~~~~~~ 308 (498)
... +-+.++...+.+.++..+
T Consensus 193 ia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 193 IAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHc-cccCcHHHHHHHHHHHHH
Confidence 877 666677777777776554
No 331
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.02 E-value=8.1 Score=37.98 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHH---hcCCCC----
Q 010864 187 LLEEACKKYDEATRLC----PTL----HDAFYNWAIAISDRAKMRG-RTKEAEELWKQATKNYEKAV---QLNWNS---- 250 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~----p~~----~~a~~~lg~~~~~~~~~~g-~~~eA~~~~~~Al~~~~~Al---~l~P~~---- 250 (498)
+++.|...|.|+-.+. |+. +..+||.|..+.. .+ ++++|...+++|...+++.- ...|+.
T Consensus 8 ~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~----~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 8 DLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS----KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred CHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH----cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 3999999999987764 432 4678999999998 99 99999999999998887633 333332
Q ss_pred HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 251 PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 251 ~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
..++..|+.+|...+.+ ...++|....+.+-.-.|+.+..+.
T Consensus 84 ~~iL~~La~~~l~~~~~-------~~~~ka~~~l~~l~~e~~~~~~~~~ 125 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTY-------ESVEKALNALRLLESEYGNKPEVFL 125 (278)
T ss_pred HHHHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCCCCcHHHH
Confidence 45677888888887776 2335566666666566677666663
No 332
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=91.96 E-value=0.69 Score=53.40 Aligned_cols=123 Identities=20% Similarity=0.203 Sum_probs=100.0
Q ss_pred HHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 010864 188 LEEACK------KYD-EATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGL 259 (498)
Q Consensus 188 ~~~A~~------~~~-~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~ 259 (498)
+.+|.+ .+. ....++|.....|..|+.++.. .|++++|+..-.+|.-.+++.+.++ |+....+.|++.
T Consensus 948 ~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~----~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 948 FSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNR----LGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred hhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhh----hcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 555555 555 4444588999999999999999 9999999988888888999999888 567788999998
Q ss_pred HHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (498)
Q Consensus 260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 331 (498)
.....++. ..|...+.++..+ .|.-.....|++.++...++ +.
T Consensus 1024 ~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-------------------~d 1074 (1236)
T KOG1839|consen 1024 YEFAVKNL----------SGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-------------------AD 1074 (1236)
T ss_pred HHHhccCc----------cchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-------------------HH
Confidence 88888888 8899998888876 46666777899999888887 67
Q ss_pred HHHHHHHHHHhc
Q 010864 332 QSAIYIAAAHAL 343 (498)
Q Consensus 332 ~A~~~~~~Al~l 343 (498)
.|+.|.+.|+++
T Consensus 1075 ~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1075 TALRYLESALAK 1086 (1236)
T ss_pred HHHHHHHHHHHH
Confidence 777777777764
No 333
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.32 E-value=2.3 Score=46.41 Aligned_cols=159 Identities=21% Similarity=0.190 Sum_probs=91.9
Q ss_pred HHhhccHHHHHHHHHH------HHHhC----CCCH-HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH--
Q 010864 134 RSRQRILTFAAKRYAN------AIERN----PEDY-DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR-- 200 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~------al~~~----P~~~-~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~-- 200 (498)
+.+..++++|+++|.+ ++++. |... ..--.+|.-+.+.|+ ++.|+.+|-.|--
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q--------------~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQ--------------LDAAINHFIEANCLI 736 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHh--------------HHHHHHHHHHhhhHH
Confidence 5566788888888765 44432 3222 223456777777787 7777766644321
Q ss_pred -----------------h-----CCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHH------Hh
Q 010864 201 -----------------L-----CPTLH-DAFYNWAIAISDRAKMRGRTKEAEELWKQ------ATKNYEKA------VQ 245 (498)
Q Consensus 201 -----------------l-----~p~~~-~a~~~lg~~~~~~~~~~g~~~eA~~~~~~------Al~~~~~A------l~ 245 (498)
+ +.+.. ..|-.++.-|.. .|+|+-|.++|.+ |+.+|-++ .+
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan----~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYAN----KGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhcc----chhHHHHHHHHHhcchhHHHHHHHhccccHHHHHH
Confidence 1 11111 233445666666 8888888877643 45544433 21
Q ss_pred c----C-CCC-HHHHHHHHHHHHHhcCcchH---HhhhhhHHHHHHHHHHH------HHh----cCCC-HHHHHHHHHHH
Q 010864 246 L----N-WNS-PQALNNWGLALQELSAIVPA---REKQTIVRTAISKFRAA------IQL----QFDF-HRAIYNLGTVL 305 (498)
Q Consensus 246 l----~-P~~-~~a~~~lg~~l~~~g~~~~a---~~~~~~~~~Ai~~~~~A------l~l----~P~~-~~a~~~Lg~~~ 305 (498)
+ . |.. ...|...+.-+-+.|+|.+| +-..|..+.||..|.+. |++ +|+. .+.+..+|.-|
T Consensus 813 la~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~ 892 (1636)
T KOG3616|consen 813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKEL 892 (1636)
T ss_pred HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 1 1 332 33455566667788888766 34567778888888764 222 3332 35566677777
Q ss_pred HHcch
Q 010864 306 YGLAE 310 (498)
Q Consensus 306 ~~~g~ 310 (498)
...|+
T Consensus 893 e~~g~ 897 (1636)
T KOG3616|consen 893 EAEGD 897 (1636)
T ss_pred HhccC
Confidence 76666
No 334
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.29 E-value=0.22 Score=41.06 Aligned_cols=81 Identities=19% Similarity=0.318 Sum_probs=45.8
Q ss_pred Cchhhhhhhhccchh-hhhhhcc-cchhhccccccCCCCCCCCCCccccccCCcccccccccCCC--CCCCCeeeEeecC
Q 010864 382 PHSDWKRSQFVLNHE-GLQQASK-NEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLT--LPPGAGLCIETIH 457 (498)
Q Consensus 382 ~~~~w~~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~ 457 (498)
....|+++||+|..+ .+..+.. +.. .....+|+..+ ++..|.-.. -+....|.|.+..
T Consensus 13 ~~~~Wk~R~f~L~~~~~l~~yk~~~~~-----------------~~~~~i~l~~~-~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 13 YIKTWRPRYFLLKSDGSFIGYKEKPED-----------------GDPFLPPLNNF-SVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CCCCCeeEEEEEeCCCeEEEEecCCCc-----------------cCccccccCCe-EEeeeeeeeccCCCcceEEEEecc
Confidence 346899999999843 3443221 111 11235565554 443343221 2333566665211
Q ss_pred -C-c--eeeeecChhhhhhHHHHHHHH
Q 010864 458 -G-P--VFLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 458 -~-~--~~~~~~~~~~~~~~~~a~~~~ 480 (498)
+ . -++.|+|.++++.|..||+-|
T Consensus 75 ~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 1 1 255799999999999999754
No 335
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=90.80 E-value=1.8 Score=33.68 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~ 252 (498)
.|++++|+.+|.+|+..|..++...|+...
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 899999999999999999999999986543
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.77 E-value=4.7 Score=41.36 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=69.6
Q ss_pred hhhHHhhccHHHHHHHHHHHHHhC--------CCCH----------HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH
Q 010864 131 EEGRSRQRILTFAAKRYANAIERN--------PEDY----------DALYNWALVLQESADNVSLDSTSPSKDALLEEAC 192 (498)
Q Consensus 131 ~~~~~~~g~~~~A~~~~~~al~~~--------P~~~----------~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~ 192 (498)
+..++++++|..|+..|..+|++. |..+ -+-..|..||..+++ .+-|+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rk--------------pdlAL 248 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRK--------------PDLAL 248 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCC--------------CchHH
Confidence 444678999999999999998874 2211 234578899999999 99999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 010864 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEE 231 (498)
Q Consensus 193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~ 231 (498)
..-.+.+.++|.+..-|..-+.++.. +.+|.+|..
T Consensus 249 nh~hrsI~lnP~~frnHLrqAavfR~----LeRy~eAar 283 (569)
T PF15015_consen 249 NHSHRSINLNPSYFRNHLRQAAVFRR----LERYSEAAR 283 (569)
T ss_pred HHHhhhhhcCcchhhHHHHHHHHHHH----HHHHHHHHH
Confidence 99999999999999999999999998 999999884
No 337
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=90.76 E-value=0.36 Score=39.79 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=48.0
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCce-e
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPV-F 461 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~ 461 (498)
...|.++||+|....|.-+....... ... .....|++. .+.++.+.+.+ -+.++|.|.+..|.+ +
T Consensus 20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~-----~~~-------~~~~~i~l~-~~~i~~~~~~~-k~~~~F~l~~~~~~~~~ 85 (104)
T cd01253 20 NRSWDNVYGVLCGQSLSFYKDEKMAA-----ENV-------HGEPPVDLT-GAQCEVASDYT-KKKHVFRLRLPDGAEFL 85 (104)
T ss_pred CCCcceEEEEEeCCEEEEEecCcccc-----cCC-------CCCCcEecc-CCEEEecCCcc-cCceEEEEEecCCCEEE
Confidence 56899999999876654433221110 000 011123332 22233333322 244788887666655 6
Q ss_pred eeecChhhhhhHHHHHHH
Q 010864 462 LVADSWEALDGWLDAIRL 479 (498)
Q Consensus 462 ~~~~~~~~~~~~~~a~~~ 479 (498)
|-|+|-+++..|+.||+-
T Consensus 86 f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 86 FQAPDEEEMSSWVRALKS 103 (104)
T ss_pred EECCCHHHHHHHHHHHhc
Confidence 779999999999999963
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.73 E-value=1.1 Score=46.52 Aligned_cols=127 Identities=10% Similarity=0.087 Sum_probs=90.1
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
.|++-.|-.....++...|.+++.....+.+...+|. |+.+.....-+-.+-..-..+...+-...
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------------YEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------------HHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 5788888888888999999999999999999999999 99998887766555444344444444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~ 296 (498)
.. +|++++|. ....-.+.-.-.+++...--+..-..+|-+ ++|..++++.+.++|....
T Consensus 368 ~~----l~r~~~a~-------s~a~~~l~~eie~~ei~~iaa~sa~~l~~~----------d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 368 HG----LARWREAL-------STAEMMLSNEIEDEEVLTVAAGSADALQLF----------DKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred hc----hhhHHHHH-------HHHHHHhccccCChhheeeecccHHHHhHH----------HHHHHHHHHHhccCChhcc
Confidence 56 88888887 344544544444555444444444445555 9999999999999876543
Q ss_pred HH
Q 010864 297 AI 298 (498)
Q Consensus 297 a~ 298 (498)
.|
T Consensus 427 g~ 428 (831)
T PRK15180 427 GW 428 (831)
T ss_pred cc
Confidence 33
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.66 E-value=0.49 Score=46.43 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=72.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHcC
Q 010864 146 RYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYN-WAIAISDRAKMRG 224 (498)
Q Consensus 146 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~-lg~~~~~~~~~~g 224 (498)
.|.++....|+++..|...+......+. |.+--..|.++++.+|.+++.|.. -+.-+.. .+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------------y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~----~a 156 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------------YGEMKNIFAECLTKHPLNVDLWIYCCAFELFE----IA 156 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCceeeeeeccchhhh----hc
Confidence 4556667789999999999988888888 999999999999999999998865 4455555 78
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864 225 RTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (498)
Q Consensus 225 ~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l 257 (498)
+++.+. ..|.++++++|+++..|.-.
T Consensus 157 ni~s~R-------a~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 157 NIESSR-------AMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred cHHHHH-------HHHHhhhccCCCCchHHHHH
Confidence 888877 79999999999999887543
No 340
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=4.5 Score=43.59 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHH
Q 010864 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPED------YDALYNWALVLQESADNVSLDSTSPSKDALLEE 190 (498)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 190 (498)
.+++.++.+++-..+...++..+|..+++.|...+..-|.| +....++..+|..+.+ +++
T Consensus 347 kE~~~~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------LD~ 412 (872)
T KOG4814|consen 347 KEAISCIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------LDN 412 (872)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------HHH
Confidence 34555555555444555788899999999999999876654 5567899999999999 999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 191 ACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 191 A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
|.++|++|-+.+|.++-.....-.+... -|.-.+|+....
T Consensus 413 A~E~~~EAE~~d~~~~l~q~~~~~~~~~----E~~Se~AL~~~~ 452 (872)
T KOG4814|consen 413 AVEVYQEAEEVDRQSPLCQLLMLQSFLA----EDKSEEALTCLQ 452 (872)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHH----hcchHHHHHHHH
Confidence 9999999999999998888777777777 888888886443
No 341
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.41 E-value=0.98 Score=36.55 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhc
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLN--WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
.|++.+|++.+.+......+..... -....++.++|.++...|++ ++|+..+++|+++.
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLA 71 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHH
Confidence 8999999976665544433222111 02357789999999999999 99999999999984
No 342
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.28 E-value=0.93 Score=44.19 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (498)
Q Consensus 143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~ 218 (498)
|+.+|.+|+.+.|++...|+.+|.++...|+ .-.|+-+|-+++...--...+..||...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~--------------~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGD--------------DLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT---------------HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccc--------------hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999 9999999999997755568899999888876
No 343
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.19 E-value=3.1 Score=38.02 Aligned_cols=99 Identities=24% Similarity=0.135 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT---LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~---~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
-.++..+|..|.+.|+ +++|+++|.++...... ..+.++++-.+... .+++........
T Consensus 36 r~~~~~l~~~~~~~Gd--------------~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~----~~d~~~v~~~i~ 97 (177)
T PF10602_consen 36 RMALEDLADHYCKIGD--------------LEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF----FGDWSHVEKYIE 97 (177)
T ss_pred HHHHHHHHHHHHHhhh--------------HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHH
Confidence 4688999999999999 99999999998887544 23566677777777 999999986555
Q ss_pred HHHHHHHHHHhcCCCCHH----HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 235 QATKNYEKAVQLNWNSPQ----ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 235 ~Al~~~~~Al~l~P~~~~----a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
+|....++ ..+.. ....-|..+...++| .+|...|-.++.
T Consensus 98 ka~~~~~~-----~~d~~~~nrlk~~~gL~~l~~r~f----------~~AA~~fl~~~~ 141 (177)
T PF10602_consen 98 KAESLIEK-----GGDWERRNRLKVYEGLANLAQRDF----------KEAAELFLDSLS 141 (177)
T ss_pred HHHHHHhc-----cchHHHHHHHHHHHHHHHHHhchH----------HHHHHHHHccCc
Confidence 55544443 22232 233445666667777 888888877653
No 344
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=90.13 E-value=22 Score=35.65 Aligned_cols=181 Identities=17% Similarity=0.075 Sum_probs=115.4
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcC---CCCC---------CCCchhhhHHHHHHHHHHHHHhC-
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNV---SLDS---------TSPSKDALLEEACKKYDEATRLC- 202 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~---~~~~---------~~~~~~~~~~~A~~~~~~Al~l~- 202 (498)
+-+--++||..-.-.+.+-|..++++-.++..+++..+.. ..+| ....+.+..+++.....+|+...
T Consensus 208 ra~Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~ 287 (415)
T COG4941 208 RADLCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRR 287 (415)
T ss_pred cchHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 3455688999999999999999999999999998876631 1222 23344567889999999998874
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (498)
Q Consensus 203 p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~ 282 (498)
|.-....-.++.++.. .. ...-..|..-...|.-...+.|+ +.+-.|.+.++.+.--. ..++.
T Consensus 288 pGPYqlqAAIaa~HA~----a~--~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp----------~agLa 350 (415)
T COG4941 288 PGPYQLQAAIAALHAR----AR--RAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGP----------AAGLA 350 (415)
T ss_pred CChHHHHHHHHHHHHh----hc--ccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhH----------HhHHH
Confidence 3433344444444433 11 11112344444677766666664 44455566666555544 66666
Q ss_pred HHHHHHHh--cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 283 KFRAAIQL--QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSS 352 (498)
Q Consensus 283 ~~~~Al~l--~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~ 352 (498)
..+....- -.++...+--.|..+.++|+ ..+|...|.+|+.+.++......
T Consensus 351 ~ve~L~~~~~L~gy~~~h~~RadlL~rLgr-------------------~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 351 MVEALLARPRLDGYHLYHAARADLLARLGR-------------------VEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHHHhhcccccccccccHHHHHHHHHHhCC-------------------hHHHHHHHHHHHHhcCChHHHHH
Confidence 65554443 23445556667788888887 67788888888888877664333
No 345
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.09 E-value=29 Score=37.01 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=83.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHc
Q 010864 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMR 223 (498)
Q Consensus 145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~~~~~~~ 223 (498)
-.|++++..-+-.++.|+..+..+...++.+..-+.-....-.-+++..+|++++..--. +...++.++.
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~--------- 336 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD--------- 336 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 468889988899999999888877777664333333334444578888899988875332 3333333332
Q ss_pred CCHHHHHHH---HHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcCcchH-------------------------Hhhh
Q 010864 224 GRTKEAEEL---WKQATKNYEKAVQLNWNS-PQALNNWGLALQELSAIVPA-------------------------REKQ 274 (498)
Q Consensus 224 g~~~eA~~~---~~~Al~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~~~a-------------------------~~~~ 274 (498)
++++... +++....|++++.+.-.+ .-++.++-..-.+..-...| +.-.
T Consensus 337 --~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs 414 (656)
T KOG1914|consen 337 --YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS 414 (656)
T ss_pred --hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc
Confidence 2222211 222223333333222111 01111111111111111000 1223
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchh
Q 010864 275 TIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAED 311 (498)
Q Consensus 275 ~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~ 311 (498)
++..-|...|+-.++..++.+...+..-..+..++++
T Consensus 415 kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 3448888888888888888888777777777777763
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=89.78 E-value=0.53 Score=46.23 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=68.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHhcCcchHH
Q 010864 193 KKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNN-WGLALQELSAIVPAR 271 (498)
Q Consensus 193 ~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~-lg~~l~~~g~~~~a~ 271 (498)
-.|.++....|+++..|.....-..+ .|-+.+-- ..|.++++.+|.+++.|.. -..-+...+++
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k----~k~y~~~~-------nI~~~~l~khP~nvdlWI~~c~~e~~~~ani---- 158 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIK----KKMYGEMK-------NIFAECLTKHPLNVDLWIYCCAFELFEIANI---- 158 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHH----HHHHHHHH-------HHHHHHHhcCCCCceeeeeeccchhhhhccH----
Confidence 34556666788888888776655555 55444444 7999999999999999977 44556677777
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 272 EKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (498)
Q Consensus 272 ~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 300 (498)
+.+...|.++++++|+.+.+|+.
T Consensus 159 ------~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 159 ------ESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred ------HHHHHHHHhhhccCCCCchHHHH
Confidence 99999999999999999998865
No 347
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.38 E-value=0.4 Score=40.90 Aligned_cols=89 Identities=17% Similarity=0.187 Sum_probs=50.9
Q ss_pred hhhhhhhhccchhhhhhhcccchhh-ccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCceee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQ-VTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFL 462 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 462 (498)
..|.++||+|.+.-+..+..+.... .+.=.- ..+..+.......+.+. +..-+. -+..++|+|.|..=...|
T Consensus 31 ~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~-D~~f~v~~~~~~~~~~~-----~~~~~~-~~~~~~~~i~t~~R~~~l 103 (121)
T cd01254 31 DRWQKRWFIVKESFLAYMDDPSSAQILDVILF-DVDFKVNGGGKEDISLA-----VELKDI-TGLRHGLKITNSNRSLKL 103 (121)
T ss_pred cCCcceeEEEeCCEEEEEcCCCCCceeeEEEE-cCCccEEeCCccccccc-----cccccc-CCCceEEEEEcCCcEEEE
Confidence 4799999999988887766544411 000000 00000000000001111 111111 356789999977777799
Q ss_pred eecChhhhhhHHHHHHH
Q 010864 463 VADSWEALDGWLDAIRL 479 (498)
Q Consensus 463 ~~~~~~~~~~~~~a~~~ 479 (498)
.|+|.+.+.+|.++|..
T Consensus 104 ~a~s~~~~~~Wi~~i~~ 120 (121)
T cd01254 104 KCKSSRKLKQWMASIED 120 (121)
T ss_pred EeCCHHHHHHHHHHHHh
Confidence 99999999999999974
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.95 E-value=10 Score=33.51 Aligned_cols=71 Identities=13% Similarity=-0.074 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLG 302 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg 302 (498)
.++++++. ......--+.|+.+..-..-|.++...|++ .+|+..|+...+-.+..+..--.++
T Consensus 23 ~~d~~D~e-------~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 23 SADPYDAQ-------AMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred cCCHHHHH-------HHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHH
Confidence 77888887 466666678899999999999999999999 9999999999999999999999999
Q ss_pred HHHHHcch
Q 010864 303 TVLYGLAE 310 (498)
Q Consensus 303 ~~~~~~g~ 310 (498)
.|++.+|+
T Consensus 86 ~CL~al~D 93 (153)
T TIGR02561 86 LCLNAKGD 93 (153)
T ss_pred HHHHhcCC
Confidence 99999997
No 349
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.92 E-value=28 Score=37.11 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHcchhHHhccCCCCCCCCCh
Q 010864 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL---QFD----FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSP 326 (498)
Q Consensus 254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l---~P~----~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~ 326 (498)
+..+|.++..+|+. ..|..+|..+++. ... .|.++|.||..|+.++.
T Consensus 452 ~lL~g~~lR~Lg~~----------~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g---------------- 505 (546)
T KOG3783|consen 452 YLLKGVILRNLGDS----------EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG---------------- 505 (546)
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc----------------
Confidence 45566677777766 9999999998843 222 26899999999999985
Q ss_pred hHHHHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHcc
Q 010864 327 NELYSQSAIYIAAAHALKPSYS-------VYSSALRLVRSM 360 (498)
Q Consensus 327 ~~~~~~A~~~~~~Al~l~p~~~-------~~~~~l~~~~~~ 360 (498)
...++..++.+|-+...++. ..+.++..++..
T Consensus 506 --~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~~~r~~ 544 (546)
T KOG3783|consen 506 --GLKEARALLLKAREYASDYELENRLHMRIQAALHTVRKL 544 (546)
T ss_pred --ChHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHhcc
Confidence 15778888888888876665 344455555543
No 350
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=88.80 E-value=0.92 Score=30.11 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV 244 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al 244 (498)
++|..||.+-.. .++|.+|++.|++|+...++.+
T Consensus 2 dv~~~Lgeisle----~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 2 DVYDLLGEISLE----NENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred cHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHhc
Confidence 578889999999 9999999988888887776654
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.74 E-value=32 Score=38.82 Aligned_cols=147 Identities=14% Similarity=0.034 Sum_probs=97.3
Q ss_pred HhhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----C
Q 010864 135 SRQRILTFAAKRYANAIERNPED-----YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----L 205 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~ 205 (498)
...|++++|++..+.++..-|.+ ..++..+|.+..-.|+ +++|......+.++... +
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~--------------~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGE--------------LTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhch--------------HHHHHHHHHHHHHHHHHcccHH
Confidence 34689999999999999887765 4567889999999999 99999999999888433 2
Q ss_pred HHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864 206 HDAF--YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (498)
Q Consensus 206 ~~a~--~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~ 283 (498)
...| +..+.++.. +|+...+...-... ..+.+-+...|.......-.+.+++..-++ +.+..-
T Consensus 535 l~~~~~~~~s~il~~----qGq~~~a~~~~~~~-~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~----------~~~~~e 599 (894)
T COG2909 535 LALWSLLQQSEILEA----QGQVARAEQEKAFN-LIREQHLEQKPRHEFLVRIRAQLLRAWLRL----------DLAEAE 599 (894)
T ss_pred HHHHHHHHHHHHHHH----hhHHHHHHHHHHHH-HHHHHHhhhcccchhHHHHHHHHHHHHHHH----------hhhhHH
Confidence 3333 334666666 78333333211111 123333444566666666666666666667 777777
Q ss_pred HHHHHHhc----C--CCHH-HHHHHHHHHHHcch
Q 010864 284 FRAAIQLQ----F--DFHR-AIYNLGTVLYGLAE 310 (498)
Q Consensus 284 ~~~Al~l~----P--~~~~-a~~~Lg~~~~~~g~ 310 (498)
..+.+++- | -... ++++|+.+++..|+
T Consensus 600 ar~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd 633 (894)
T COG2909 600 ARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD 633 (894)
T ss_pred hhhcchhhhhcccchhHHHHHHHHHHHHHHhcCC
Confidence 77777652 2 2222 33589999999998
No 352
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=88.50 E-value=25 Score=34.17 Aligned_cols=153 Identities=14% Similarity=0.035 Sum_probs=94.5
Q ss_pred hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhh
Q 010864 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPEDYDALYNWALVLQESADNVSLDSTSPSKDAL 187 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~ 187 (498)
..++++|++++.+.... +.+.|++.-|.++..-.++. .+.+.+...++..++..... ....+...
T Consensus 3 ~kky~eAidLL~~Ga~~----ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~------~~p~r~~f 72 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALI----LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPP------EEPERKKF 72 (260)
T ss_dssp TT-HHHHHHHHHHHHHH----HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T------T-TTHHHH
T ss_pred cccHHHHHHHHHHHHHH----HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------CcchHHHH
Confidence 36788999999888777 67778887777665554443 34555666788888877654 22335555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHH----HHHHHHHhcCCCCHHHHHHHH
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK-----QAT----KNYEKAVQLNWNSPQALNNWG 258 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~-----~Al----~~~~~Al~l~P~~~~a~~~lg 258 (498)
..+|+++- +.-...-.++..|..+|..|.+ .|++.+|..+|- .+. -.+....+-.|.....+...+
T Consensus 73 i~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~----e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 73 IKAAIKWS-KFGSYKFGDPELHHLLAEKLWK----EGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp HHHHHHHH-HTSS-TT--HHHHHHHHHHHHH----TT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHHHHHH-ccCCCCCCCHHHHHHHHHHHHh----hccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 66666666 2222233588999999999999 999999998771 121 223333456677777777777
Q ss_pred HH-HHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 259 LA-LQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 259 ~~-l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.+ |..+++. ..|...+..-++.
T Consensus 148 VL~yL~l~n~----------~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNL----------RDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBH----------HHHHHHHHHHHHH
T ss_pred HHHHHHhcCH----------HHHHHHHHHHHHH
Confidence 55 5566777 7777766655544
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.37 E-value=7.6 Score=44.68 Aligned_cols=105 Identities=15% Similarity=0.131 Sum_probs=79.8
Q ss_pred hhHHhhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH
Q 010864 132 EGRSRQRILTFAAKRYANAIERNPED---YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA 208 (498)
Q Consensus 132 ~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a 208 (498)
..+...+.|+.|+..|++.-.-.|+- -++.+..|..+.++.. ...+...+++|+.-|++.- -.|.-+--
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 554 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-------EQGDPRDFTQALSEFSYLH-GGVGAPLE 554 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-------hcCChHHHHHHHHHHHHhc-CCCCCchH
Confidence 34566789999999999999999875 4688999999988765 1222356888888887753 34555666
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010864 209 FYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (498)
Q Consensus 209 ~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~ 255 (498)
|...+.+|.. +|++.|-+ ++|.-|++..|+.+..-.
T Consensus 555 ~~~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 555 YLGKALVYQR----LGEYNEEI-------KSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHhHHHHHHH----hhhHHHHH-------HHHHHHHHhcCCCCccHH
Confidence 7888888888 99999999 677888877777665433
No 354
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=88.31 E-value=0.38 Score=40.46 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCeeeEeecCCceeeeecChhhhhhHHHHHH
Q 010864 447 PGAGLCIETIHGPVFLVADSWEALDGWLDAIR 478 (498)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 478 (498)
....+-+.|...-.+|.+++.++..+|.+||.
T Consensus 79 ~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~ 110 (112)
T PF15413_consen 79 HLKVFSIFTPTKTFHLRCETREDRYDWIEALQ 110 (112)
T ss_dssp SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcEEECCCcEEEEEECCHHHHHHHHHHHH
Confidence 33445666666667999999999999999996
No 355
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.28 E-value=41 Score=36.27 Aligned_cols=162 Identities=8% Similarity=0.036 Sum_probs=118.5
Q ss_pred hcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhcCcCCCCCCCCchh
Q 010864 114 EQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER-----NPED---YDALYNWALVLQESADNVSLDSTSPSKD 185 (498)
Q Consensus 114 ~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~---~~a~~~lg~~~~~~g~~~~~~~~~~~~~ 185 (498)
...+++...+.+........+.......+.+..|+..+.. +|.+ ...|......-...|+
T Consensus 245 ~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~------------ 312 (577)
T KOG1258|consen 245 KSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGD------------ 312 (577)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhccc------------
Confidence 3344444455555555444444455556666666666642 3333 3455555555666777
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Q 010864 186 ALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQEL 264 (498)
Q Consensus 186 ~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 264 (498)
++...-.|++++--...+...|.+....+.. .|+.+-|.. .+.++.+.. |+.+..+...+.+-...
T Consensus 313 --~~~~~~l~ercli~cA~Y~efWiky~~~m~~----~~~~~~~~~-------~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 313 --FSRVFILFERCLIPCALYDEFWIKYARWMES----SGDVSLANN-------VLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred --HHHHHHHHHHHHhHHhhhHHHHHHHHHHHHH----cCchhHHHH-------HHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 899998884 555555544 77788888888888888
Q ss_pred cCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 265 SAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 265 g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
|++ ..|...+++...--|+...+-..-......+|+
T Consensus 380 ~n~----------~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~ 415 (577)
T KOG1258|consen 380 GNF----------DDAKVILQRIESEYPGLVEVVLRKINWERRKGN 415 (577)
T ss_pred ccH----------HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcc
Confidence 898 999999999998779988777666666667665
No 356
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=6.8 Score=40.99 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=86.6
Q ss_pred hhccHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-------
Q 010864 136 RQRILTFAAKRYANAIERNPE-D--YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------- 205 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~-~--~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------- 205 (498)
.-+.++.|...|..|.++--. + +-+-.|+|.+|...++ +...|+-.=.+.|.+
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-----------------~ed~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD-----------------AEDLYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc-----------------HHHHHHHHHhcCCCCCCcchHH
Confidence 357889999999998876432 2 3345688999999888 444444444445552
Q ss_pred ---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864 206 ---HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (498)
Q Consensus 206 ---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~ 282 (498)
..+++-.|...+. ++++.||.....+.++.- .|-.++--.+..+..||.+..-.|+. .++..
T Consensus 442 ~l~a~~~~v~glfaf~----qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~----------~es~n 506 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFK----QNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNT----------VESRN 506 (629)
T ss_pred HHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcch----------HHHHh
Confidence 2456666666666 999999995333333222 12222222355677888899999999 99998
Q ss_pred HHHHHHHhc---CCCHHHHHH
Q 010864 283 KFRAAIQLQ---FDFHRAIYN 300 (498)
Q Consensus 283 ~~~~Al~l~---P~~~~a~~~ 300 (498)
..+-++.+. ||.+..+..
T Consensus 507 mvrpamqlAkKi~Di~vqLws 527 (629)
T KOG2300|consen 507 MVRPAMQLAKKIPDIPVQLWS 527 (629)
T ss_pred ccchHHHHHhcCCCchHHHHH
Confidence 888888774 555544443
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.98 E-value=0.91 Score=30.14 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 202 (498)
++|..||.+-...++ |++|+..|+++|++.
T Consensus 2 dv~~~Lgeisle~e~--------------f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN--------------FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc--------------HHHHHHHHHHHHHHH
Confidence 578899999999999 999999999999874
No 358
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.45 E-value=2 Score=28.16 Aligned_cols=34 Identities=21% Similarity=0.136 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHH--HHHHHHhCCCC
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKK--YDEATRLCPTL 205 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~--~~~Al~l~p~~ 205 (498)
++.++.+|..+..+|+ +++|+.. |.-+..+++.|
T Consensus 1 ~e~~y~~a~~~y~~~k--------------y~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGK--------------YDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHhcccC
Confidence 3568899999999999 9999999 55888887764
No 359
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.41 E-value=0.67 Score=36.11 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=50.2
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecC-Cceee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIH-GPVFL 462 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~ 462 (498)
..|.+++++|....+.-........ .......|++.+ ..+....+.. ...++|.|.+.. ...+|
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~-------------~~~~~~~i~l~~-~~v~~~~~~~-~~~~~f~i~~~~~~~~~~ 78 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKK-------------SYKPKGSIPLSG-AEVEESPDDS-GRKNCFEIRTPDGRSYLL 78 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCc-------------CCCCcceEEcCC-CEEEECCCcC-CCCcEEEEecCCCcEEEE
Confidence 5799999999866555433222100 122344555555 3333222211 345778887766 45689
Q ss_pred eecChhhhhhHHHHHHH
Q 010864 463 VADSWEALDGWLDAIRL 479 (498)
Q Consensus 463 ~~~~~~~~~~~~~a~~~ 479 (498)
.+.|.+++..|.++|+.
T Consensus 79 ~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 79 QAESEEEREEWIEALQS 95 (96)
T ss_pred EeCCHHHHHHHHHHHhc
Confidence 99999999999999974
No 360
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=87.21 E-value=4.8 Score=31.03 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~ 250 (498)
+++|+....+|++. -. .|++++|+.+|.+|+..|.+++...|+.
T Consensus 5 ~~~A~~li~~Av~~---------------d~----~g~~~eAl~~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 5 LSKAKELISKALKA---------------DE----AGDYEEALELYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHH---------------HH----cCCHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 56666666666443 34 8999999999999999999999988763
No 361
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.12 E-value=6.3 Score=38.69 Aligned_cols=74 Identities=18% Similarity=0.152 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 010864 157 DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQA 236 (498)
Q Consensus 157 ~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~A 236 (498)
...++..++..+...|+ ++.++..+++.+.++|.+-.+|..+-.+|.. .|+...|+..|++.
T Consensus 152 ~~~~l~~lae~~~~~~~--------------~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~----~g~~~~ai~~y~~l 213 (280)
T COG3629 152 FIKALTKLAEALIACGR--------------ADAVIEHLERLIELDPYDEPAYLRLMEAYLV----NGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHhcCccchHHHHHHHHHHHH----cCCchHHHHHHHHH
Confidence 45678889999999999 9999999999999999999999999999999 99999999877666
Q ss_pred HHHHHHHHhcCC
Q 010864 237 TKNYEKAVQLNW 248 (498)
Q Consensus 237 l~~~~~Al~l~P 248 (498)
-.....-+..+|
T Consensus 214 ~~~~~edlgi~P 225 (280)
T COG3629 214 KKTLAEELGIDP 225 (280)
T ss_pred HHHhhhhcCCCc
Confidence 655555555555
No 362
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.08 E-value=28 Score=37.09 Aligned_cols=125 Identities=12% Similarity=0.137 Sum_probs=82.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHH
Q 010864 148 ANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTK 227 (498)
Q Consensus 148 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~ 227 (498)
++-++.+|.|.++|+.|-.-+..+ . +++..+.|++.+...|..+.+|......... ..+|+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~--------------~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~----skdfe 70 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-P--------------IDKVRETYEQLVNVFPSSPRAWKLYIERELA----SKDFE 70 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-C--------------HHHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhhHH
Confidence 677899999999999998877666 6 9999999999999999999999887776666 77888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH---hcCCCHHHHHHHHH
Q 010864 228 EAEELWKQATKNYEKAVQLNWNSPQAL-NNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ---LQFDFHRAIYNLGT 303 (498)
Q Consensus 228 eA~~~~~~Al~~~~~Al~l~P~~~~a~-~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~---l~P~~~~a~~~Lg~ 303 (498)
.-+++|.+++. +.+. .+.| ..|-.+....|+.. +.-..-...|+-++. .++....+|...+.
T Consensus 71 ~VEkLF~RCLv---kvLn-----lDLW~lYl~YVR~~~~~~~------~~r~~m~qAy~f~l~kig~di~s~siW~eYi~ 136 (656)
T KOG1914|consen 71 SVEKLFSRCLV---KVLN-----LDLWKLYLSYVRETKGKLF------GYREKMVQAYDFALEKIGMDIKSYSIWDEYIN 136 (656)
T ss_pred HHHHHHHHHHH---HHhh-----HhHHHHHHHHHHHHccCcc------hHHHHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 87755554432 2222 3333 23444444455540 111112223333333 36666677776665
Q ss_pred HH
Q 010864 304 VL 305 (498)
Q Consensus 304 ~~ 305 (498)
.+
T Consensus 137 FL 138 (656)
T KOG1914|consen 137 FL 138 (656)
T ss_pred HH
Confidence 44
No 363
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.07 E-value=7.6 Score=34.28 Aligned_cols=69 Identities=17% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
.+++...+...--+.|+.......-|.++.. .|++.+|+ ..++...+-.+..+.+.-.++.|+.-+|+.
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~----rg~w~eA~-------rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLLIA----RGNYDEAA-------RILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHHHH----cCCHHHHH-------HHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 8999999988888999999999999999999 99999999 688888887788898999999999999985
No 364
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=87.06 E-value=4.8 Score=31.05 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~ 250 (498)
+++|+..+.+|++.+ . .|++++|+.+|.+|+..|.++++..|+.
T Consensus 3 ~~~A~~l~~~Av~~D---------------~----~g~y~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEED---------------N----AGNYEEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----cCCHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 566777777775543 3 8999999999999999999999988854
No 365
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=86.45 E-value=5.1 Score=38.96 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYN 300 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~ 300 (498)
.++++.|. .+-++.+.++|+++.-+.-.|.+|.++|-+ .-|+..+...++.-|+++.+-.-
T Consensus 194 e~~~~~al-------~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 194 ELQWELAL-------RVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred hhchHHHH-------HHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHH
Confidence 66666666 799999999999999999999999999999 99999999999999998766543
No 366
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.24 E-value=11 Score=34.60 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=96.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
+.+|++|...|..--.- -.++...+.+|..++. |. -...+++..|+..|..+-. -+.+.+..++|.++
T Consensus 48 ~knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~-GK--------gG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~ 115 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLA-GK--------GGDDASLSKAIRPMKIACD--ANIPQACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhc-cc--------CCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhh
Confidence 34455555555443322 2456777888776543 33 0234459999999998865 66788889999988
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC-cc-----hH--------HhhhhhHHHHHH
Q 010864 217 SDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA-IV-----PA--------REKQTIVRTAIS 282 (498)
Q Consensus 217 ~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~-~~-----~a--------~~~~~~~~~Ai~ 282 (498)
.. .....++--...+|..++.++..+ ++..+-++|...|..-.+ +. ++ ..-.++.+.|.+
T Consensus 116 ~~----g~~~r~~dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 116 WN----GEKDRKADPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred cc----CcCCccCCCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 76 554445444556667899998866 567777777776653311 10 00 223577888888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 283 KFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 283 ~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+--+|-++ +++.+.-|+...| .+|+
T Consensus 190 fa~kACel--~~~~aCAN~SrMy-klGD 214 (248)
T KOG4014|consen 190 FAIKACEL--DIPQACANVSRMY-KLGD 214 (248)
T ss_pred HHHHHHhc--CChHHHhhHHHHH-HccC
Confidence 87777766 4566777777654 4553
No 367
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=86.12 E-value=0.84 Score=45.64 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-------------cCCCCHHHHHHHHHHHHHhcCcchHHhhhhhH
Q 010864 211 NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-------------LNWNSPQALNNWGLALQELSAIVPAREKQTIV 277 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~-------------l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~ 277 (498)
+.|.-..+ .+++.+|...|.+++.++.. +. +...-.....|++.+-.+.+.+
T Consensus 227 ~~~~~~~k----k~~~~~a~~k~~k~~r~~~~-~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~---------- 291 (372)
T KOG0546|consen 227 NIGNKEFK----KQRYREALAKYRKALRYLSE-QSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGR---------- 291 (372)
T ss_pred ccchhhhh----hccHhHHHHHHHHHhhhhcc-cccccccccccccccccccccccccchHHhcccccCC----------
Confidence 34445566 88888888888888777764 11 1111234566788888888888
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLV 357 (498)
Q Consensus 278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~ 357 (498)
..|+..-..+++.+++...+++..+..+..+.+ +.++...+..+....|++..+...+.-+
T Consensus 292 ~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~-------------------~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 292 GGARFRTNEALRDERSKTKAHYRRGQAYKLLKN-------------------YDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred CcceeccccccccChhhCcHHHHHHhHHHhhhc-------------------hhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 999988888899999999999999999999998 8999999999999999999888777766
Q ss_pred Hcc
Q 010864 358 RSM 360 (498)
Q Consensus 358 ~~~ 360 (498)
+..
T Consensus 353 ~~~ 355 (372)
T KOG0546|consen 353 RQK 355 (372)
T ss_pred hhH
Confidence 543
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.07 E-value=26 Score=32.62 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcch
Q 010864 249 NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD----FHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 249 ~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~----~~~a~~~Lg~~~~~~g~ 310 (498)
+++...+.||..|.+.. . ++|+..|-+++++... +++++..|+.++..+++
T Consensus 139 ~t~elq~aLAtyY~krD-~----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 139 ETAELQYALATYYTKRD-P----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred CCHHHHHHHHHHHHccC-H----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 46778888887777443 3 8888888888887433 47888888888888887
No 369
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.80 E-value=15 Score=40.13 Aligned_cols=103 Identities=19% Similarity=0.083 Sum_probs=60.9
Q ss_pred hhcHHHHHHHHHHhhhcch--hhHHhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhH
Q 010864 113 AEQNNAAMELINSVTGVDE--EGRSRQRILTFAAKRYANAIER--NPEDYDALYNWALVLQESADNVSLDSTSPSKDALL 188 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 188 (498)
-|++++|..+|-.+-+.+- +.+.+.|++-.-.++++.--.- |..--.++.++|..+..+.. +
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~--------------W 812 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMME--------------W 812 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHH--------------H
Confidence 3556666665544333321 1123344444333333221100 11224689999999988888 8
Q ss_pred HHHHHHHHHHHH----------------------hCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 189 EEACKKYDEATR----------------------LCPTLHDAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 189 ~~A~~~~~~Al~----------------------l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
++|.++|.+.-. --|++...+-.+|.++.. .|.-++|.+.|
T Consensus 813 e~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s----vGMC~qAV~a~ 875 (1189)
T KOG2041|consen 813 EEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS----VGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh----hchHHHHHHHH
Confidence 888888876421 146677777778888888 88888888765
No 370
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.26 E-value=28 Score=39.88 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHhcCcchH--------------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 010864 249 NSPQALNNWGLALQELSAIVPA--------------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGL 308 (498)
Q Consensus 249 ~~~~a~~~lg~~l~~~g~~~~a--------------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~ 308 (498)
++..+|-..+.++...+.+.-| ++..|.|++-|..++.++-+..-+...+-.||.+|.+-
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 3556666666666655555444 56788999999999999998887777788888888766
Q ss_pred c
Q 010864 309 A 309 (498)
Q Consensus 309 g 309 (498)
.
T Consensus 1327 k 1327 (1666)
T KOG0985|consen 1327 K 1327 (1666)
T ss_pred C
Confidence 5
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.14 E-value=5.9 Score=31.90 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 010864 188 LEEACKKYDEATRLCPT---------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK 242 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~---------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~ 242 (498)
|.+|++.+.+.+..... ...+..++|.++.. .|++++|+..+++|+...++
T Consensus 14 y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~----~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 14 YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR----FGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Confidence 99999888888877332 24567888888888 99999999877777665554
No 372
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.00 E-value=32 Score=36.97 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=84.5
Q ss_pred hhhhHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC----
Q 010864 184 KDALLEEACKKYDEATRL------------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN---- 247 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l------------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~---- 247 (498)
...-|++|...|.-|+.. +|-+.+.+..++.++.. +|+.+.|.++.++++-.+++++.-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~----qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRF----QGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHH----hcchhhHHHHHHHHHHHHHHHhccccccc
Confidence 345699999999999886 56667888999999988 9999999999999999999998432
Q ss_pred ----------CCCHH---HHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcch
Q 010864 248 ----------WNSPQ---ALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD-FHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 248 ----------P~~~~---a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~-~~~a~~~Lg~~~~~~g~ 310 (498)
|.|-. +++..-.-+.+.|=+ ..|.++++-.+.++|. ++-+...+-..|.-..+
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~----------rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrar 392 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW----------RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAR 392 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHH
Confidence 22222 222333334455666 9999999999999998 88766666555555444
No 373
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=84.93 E-value=1.1 Score=37.11 Aligned_cols=80 Identities=14% Similarity=0.236 Sum_probs=46.5
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecC----C
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIH----G 458 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~----~ 458 (498)
..|+++||++....|...-..+.. .+.....+.+. ..+..-|.++. ..+.|.+.+.. .
T Consensus 18 K~~KrrwF~lk~~~L~YyK~kee~--------------~~~p~i~lnl~---gcev~~dv~~~~~kf~I~l~~ps~~~~r 80 (106)
T cd01237 18 KGYKQYWFTFRDTSISYYKSKEDS--------------NGAPIGQLNLK---GCEVTPDVNVAQQKFHIKLLIPTAEGMN 80 (106)
T ss_pred hhheeEEEEEeCCEEEEEccchhc--------------CCCCeEEEecC---ceEEcccccccccceEEEEecCCccCCe
Confidence 359999999976655544222210 01122333332 11122223333 35666666433 2
Q ss_pred ceeeeecChhhhhhHHHHHHHH
Q 010864 459 PVFLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 459 ~~~~~~~~~~~~~~~~~a~~~~ 480 (498)
.+||.++|.+..+.|..|.||+
T Consensus 81 ~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 81 EVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred EEEEECCCHHHHHHHHHHHHHh
Confidence 4799999999999999999985
No 374
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=84.91 E-value=2.7 Score=32.58 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~ 250 (498)
+++|+....+|++.+ . .|++++|+.+|.+|+..|..+++..++.
T Consensus 3 l~~Ai~lv~~Av~~D---------------~----~g~y~eA~~lY~~ale~~~~~~k~e~~~ 46 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------Q----RGDAAAALSLYCSALQYFVPALHYETDA 46 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----hccHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 667888887776544 3 8999999999999999999999877543
No 375
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.87 E-value=23 Score=32.55 Aligned_cols=136 Identities=18% Similarity=0.052 Sum_probs=89.7
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAI 216 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~ 216 (498)
.+++..|++.|..+-. -+.+.+..++|.+++.-.. ......+..+|.+++.++-.++ +..+.++|...|
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~-------~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~ 154 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEK-------DRKADPDSEKAERYMTRACDLE--DGEACFLLSTMY 154 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcC-------CccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHH
Confidence 4678899999998876 5688899999999876544 1122334889999999997654 566777777777
Q ss_pred HHHHHH--c-----CCH-HHH-----HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864 217 SDRAKM--R-----GRT-KEA-----EELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (498)
Q Consensus 217 ~~~~~~--~-----g~~-~eA-----~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~ 283 (498)
...-.. . |.. ..+ .+..++|+..-.+|.++ +++.+-.|+...|. +|+= -.++.++|..+
T Consensus 155 ~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyk-lGDG-----v~Kde~~Aeky 226 (248)
T KOG4014|consen 155 MGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYK-LGDG-----VPKDEDQAEKY 226 (248)
T ss_pred hccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHH-ccCC-----CCccHHHHHHH
Confidence 541000 0 111 000 12335566677777766 46788888888765 4432 24566889888
Q ss_pred HHHHHHhc
Q 010864 284 FRAAIQLQ 291 (498)
Q Consensus 284 ~~~Al~l~ 291 (498)
-.+|.++.
T Consensus 227 k~rA~e~~ 234 (248)
T KOG4014|consen 227 KDRAKEIM 234 (248)
T ss_pred HHHHHHHH
Confidence 88888774
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=84.71 E-value=46 Score=33.38 Aligned_cols=106 Identities=19% Similarity=0.082 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh----cC---C---------CC-
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ----LN---W---------NS- 250 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~----l~---P---------~~- 250 (498)
..+=|+.-..||++||..+.+|..|+.-- .--..+|++++++|++.-+-.+. +. + .+
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAEEE------a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv 273 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAEEE------ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV 273 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhhhh------hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence 67778888999999999999999887654 44677888888887765443322 11 1 11
Q ss_pred -HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcc
Q 010864 251 -PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDF--HRAIYNLGTVLYGLA 309 (498)
Q Consensus 251 -~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~--~~a~~~Lg~~~~~~g 309 (498)
......|+.|-.++|+. .+|++.|+...+-.|-. -.++.||-.++..+.
T Consensus 274 l~YIKRRLAMCARklGrl----------rEA~K~~RDL~ke~pl~t~lniheNLiEalLE~Q 325 (556)
T KOG3807|consen 274 LVYIKRRLAMCARKLGRL----------REAVKIMRDLMKEFPLLTMLNIHENLLEALLELQ 325 (556)
T ss_pred hhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 12334666777777777 99999999888776632 234556666655554
No 377
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.37 E-value=18 Score=32.93 Aligned_cols=64 Identities=16% Similarity=-0.024 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHH
Q 010864 206 HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLALQELSAIVPAREKQTIVRTAIS 282 (498)
Q Consensus 206 ~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~ 282 (498)
..++..+|.-|.+ .|++++|++ .|.++....-. -.+.+.++-.+....+++ .....
T Consensus 36 r~~~~~l~~~~~~----~Gd~~~A~k-------~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~ 94 (177)
T PF10602_consen 36 RMALEDLADHYCK----IGDLEEALK-------AYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEK 94 (177)
T ss_pred HHHHHHHHHHHHH----hhhHHHHHH-------HHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHH
Confidence 4688999999999 999999994 66665544322 356778888888889998 88888
Q ss_pred HHHHHHHh
Q 010864 283 KFRAAIQL 290 (498)
Q Consensus 283 ~~~~Al~l 290 (498)
+..+|-.+
T Consensus 95 ~i~ka~~~ 102 (177)
T PF10602_consen 95 YIEKAESL 102 (177)
T ss_pred HHHHHHHH
Confidence 88888776
No 378
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.37 E-value=10 Score=41.10 Aligned_cols=86 Identities=9% Similarity=-0.021 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010864 184 KDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW 257 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l 257 (498)
...+|..+++.|...+..-|.+ +....++..+|.. +.+.+.|. ++|+.|=+.+|.++-.....
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~----L~QLD~A~-------E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK----LEQLDNAV-------EVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh----HHHHHHHH-------HHHHHHHhhccccHHHHHHH
Confidence 3444999999999999986653 5678899999999 77777777 68888999999999888888
Q ss_pred HHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 258 GLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 258 g~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
-.+....|.- ++|+.+..+....
T Consensus 435 ~~~~~~E~~S----------e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKS----------EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcch----------HHHHHHHHHHHhh
Confidence 8888888888 7777776665544
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.14 E-value=9.6 Score=35.92 Aligned_cols=175 Identities=19% Similarity=0.230 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHH----HHHHH
Q 010864 278 RTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYS----VYSSA 353 (498)
Q Consensus 278 ~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~----~~~~~ 353 (498)
++|+...+.-++-+|.+......|=.+|.-.|+ |.+|...++.+-.+.|++. .|.+.
T Consensus 18 ~dai~~a~~qVkakPtda~~RhflfqLlcvaGd-------------------w~kAl~Ql~l~a~l~p~~t~~a~lyr~l 78 (273)
T COG4455 18 QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD-------------------WEKALAQLNLAATLSPQDTVGASLYRHL 78 (273)
T ss_pred HHHHHHHHHHHhcCCccccchhHHHHHHhhcch-------------------HHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 999999999999999999888888888999998 9999999999999999887 23332
Q ss_pred HHHHHccCCchhhh-hccccCCCCCCCCCCchhhhhhh---hccchhhhhhhcccchh---hcccccc------------
Q 010864 354 LRLVRSMLPLPYLK-AGYLTAPPAGIPVAPHSDWKRSQ---FVLNHEGLQQASKNEQK---QVTRSLS------------ 414 (498)
Q Consensus 354 l~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~---~~l~~~~~~~~~~~~~~---~~~~~~~------------ 414 (498)
++. ..++ +-|.....|.....|...|...- ..+.+++-...+..-.- ...+..-
T Consensus 79 ir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~~~gg~fawia 151 (273)
T COG4455 79 IRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGHADGGSFAWIA 151 (273)
T ss_pred HHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcccCCcchhhhh
Confidence 221 1122 22222344455556677786432 23333322211000000 0000001
Q ss_pred ---CCCCC---CCCCCccccccCCcccccccccC--C-CCC-CCCeeeEeecCC---ceeeeecChhhhhhHHHHHHHHH
Q 010864 415 ---GRTGD---FSPDRRAIRIEVPDIVSVSACAD--L-TLP-PGAGLCIETIHG---PVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 415 ---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-~~p-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
.|.|. +....+-+|||...|.|++...- + -|- .+.-+++. +| .+||-|+=-.+-+. .|++||-+
T Consensus 152 DsD~RlgpvlEvitnG~Y~Wipfs~IrSL~v~~psrlrDL~w~paeltl~--dg~~~~a~LparY~gt~e~-ddalrLgr 228 (273)
T COG4455 152 DSDDRLGPVLEVITNGRYLWIPFSRIRSLSVDPPSRLRDLAWRPAELTLR--DGAIASALLPARYHGTGED-DDALRLGR 228 (273)
T ss_pred hcccccCcceEEEeCCEEEEEehhhccccccCCCCChHHhhcccceEEEe--cCceeEEEeeeecCCCccc-hHHHHhcc
Confidence 11111 12223556999999988873222 1 111 23333433 23 25888876666665 67777754
No 380
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=84.05 E-value=0.87 Score=35.75 Aligned_cols=80 Identities=25% Similarity=0.354 Sum_probs=50.9
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeec---CCc
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETI---HGP 459 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~ 459 (498)
...|..+|++|....+.-........ .....+++..+. +....+.. -..+.|.+.+. ...
T Consensus 16 ~~~w~~~~~~l~~~~l~~~~~~~~~~---------------~~~~~~~l~~~~-v~~~~~~~-~~~~~F~i~~~~~~~~~ 78 (99)
T cd00900 16 GKRWKRRWFFLFDDGLLLYKSDDKKE---------------IKPGSIPLSEIS-VEEDPDGS-DDPNCFAIVTKDRGRRV 78 (99)
T ss_pred ccCceeeEEEEECCEEEEEEcCCCCc---------------CCCCEEEccceE-EEECCCCC-CCCceEEEECCCCCcEE
Confidence 35899999999866555433322211 000245555555 44333221 24578888877 455
Q ss_pred eeeeecChhhhhhHHHHHHH
Q 010864 460 VFLVADSWEALDGWLDAIRL 479 (498)
Q Consensus 460 ~~~~~~~~~~~~~~~~a~~~ 479 (498)
++|.+.+.+++..|.+||+.
T Consensus 79 ~~~~~~~~~~~~~W~~al~~ 98 (99)
T cd00900 79 FVFQADSEEEAQEWVEALQQ 98 (99)
T ss_pred EEEEcCCHHHHHHHHHHHhc
Confidence 79999999999999999974
No 381
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.82 E-value=9.7 Score=29.57 Aligned_cols=40 Identities=23% Similarity=0.105 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC
Q 010864 189 EEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN 247 (498)
Q Consensus 189 ~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~ 247 (498)
..|+.+..+|++.+ . .|+|.+|+.+|..|+..|..++...
T Consensus 4 ~~Ai~~a~~Ave~D---------------~----~g~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 4 RDAVQFARLAVQRD---------------Q----EGRYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHHHH---------------H----ccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666554 4 8999999999999999999987555
No 382
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.75 E-value=1.1 Score=26.71 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
.++.++|.++...|++ ++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~----------~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDP----------DEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence 5688999999999999 999888763
No 383
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=83.60 E-value=1.1 Score=47.88 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=52.5
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecCCc-ee
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHGP-VF 461 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~-~~ 461 (498)
..|++++|.++...+.-.....+ ...+..+-.+.+.+|.++.|...+..| ..++|.+-|..|. +|
T Consensus 390 ~~wk~ry~~l~~~~l~~~~~~~~-------------~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~ 456 (478)
T PTZ00267 390 MRWKKRYFYIGNGQLRISLSENP-------------ENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKII 456 (478)
T ss_pred cchhhheEEecCCceEEEecccc-------------ccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEEE
Confidence 35888888886433332111111 011122334446677777776444444 5666666666665 58
Q ss_pred eeecChhhhhhHHHHHHHHH
Q 010864 462 LVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 462 ~~~~~~~~~~~~~~a~~~~~ 481 (498)
++++|.++++.|..+|+-+.
T Consensus 457 ~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 457 AYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EecCChHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 384
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=83.57 E-value=11 Score=29.22 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~ 249 (498)
+.+|+..+.+|++.+ . .|+|++|..+|.+++..|..+++..++
T Consensus 3 l~~A~~l~~~Ave~d---------------~----~~~y~eA~~~Y~~~i~~~~~~~k~e~~ 45 (75)
T cd02677 3 LEQAAELIRLALEKE---------------E----EGDYEAAFEFYRAGVDLLLKGVQGDSS 45 (75)
T ss_pred HHHHHHHHHHHHHHH---------------H----HhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 566777777776544 3 799999999999999999999988765
No 385
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=83.55 E-value=61 Score=36.40 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=91.3
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~ 217 (498)
+..++=+..++.-+.+++.+...+..|-.+++..|+ +++-...-.++.++.|..+..|.++..-..
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~d--------------l~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~ 158 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGD--------------LEKLRQARLEMSEIAPLPPHLWLEWLKDEL 158 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcc--------------hHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 334455677788888899999999999999999999 998888888999999999999999887776
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 218 DRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 218 ~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
.+.. .+...+...+|++|+..| +++..|...+..+...+.. ..+.++++.-...|.+|++-
T Consensus 159 ~mt~-s~~~~~v~~~~ekal~dy--------~~v~iw~e~~~y~~~~~~~---~~~~~d~k~~R~vf~ral~s 219 (881)
T KOG0128|consen 159 SMTQ-SEERKEVEELFEKALGDY--------NSVPIWEEVVNYLVGFGNV---AKKSEDYKKERSVFERALRS 219 (881)
T ss_pred hhcc-CcchhHHHHHHHHHhccc--------ccchHHHHHHHHHHhcccc---ccccccchhhhHHHHHHHhh
Confidence 5222 256666775555554444 3555666655555544442 33445558888888888874
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=83.09 E-value=15 Score=28.69 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=45.1
Q ss_pred HHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHhcCcCCCCCCCCchhhhHHHHHHHH
Q 010864 119 AMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWA---LVLQESADNVSLDSTSPSKDALLEEACKKY 195 (498)
Q Consensus 119 A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg---~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~ 195 (498)
+...+++.+.+ +.+.+..+|+..+.++++..++..+.+..+| .+|...|+ |.+.+++-
T Consensus 6 ak~~ie~GlkL-----Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk--------------yr~~L~fA 66 (80)
T PF10579_consen 6 AKQQIEKGLKL-----YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK--------------YREMLAFA 66 (80)
T ss_pred HHHHHHHHHHH-----hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH
Confidence 34444444443 4578889999999999999988877666555 55667777 88888776
Q ss_pred HHHHHh
Q 010864 196 DEATRL 201 (498)
Q Consensus 196 ~~Al~l 201 (498)
.+=+.+
T Consensus 67 ~~Q~~~ 72 (80)
T PF10579_consen 67 LQQLEI 72 (80)
T ss_pred HHHHHH
Confidence 554443
No 387
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.01 E-value=80 Score=34.83 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC--CCHH----HH
Q 010864 140 LTFAAKRYANAIERN-P---EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP--TLHD----AF 209 (498)
Q Consensus 140 ~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p--~~~~----a~ 209 (498)
...|+.+++-+++.. + ..+.+++.+|.+|+.--. ++++|..++.|++.+.. +..+ +.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~-------------n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~ 103 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETE-------------NLDLAETYLEKAILLCERHRLTDLKFRCQ 103 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 344888888888522 1 135678999999995544 39999999999999864 4333 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHH-H-HHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 210 YNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWG-L-ALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 210 ~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg-~-~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
+.++.++.+ .+... |....++++..++. .+. .....+.+- . .+...+++ ..|+..++.
T Consensus 104 ~ll~~i~~~----~~~~~-a~~~l~~~I~~~~~----~~~~~w~~~frll~~~l~~~~~d~----------~~Al~~L~~ 164 (608)
T PF10345_consen 104 FLLARIYFK----TNPKA-ALKNLDKAIEDSET----YGHSAWYYAFRLLKIQLALQHKDY----------NAALENLQS 164 (608)
T ss_pred HHHHHHHHh----cCHHH-HHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHHHhcccH----------HHHHHHHHH
Confidence 455555555 66666 88766666666664 111 122222222 1 12122566 999999999
Q ss_pred HHHhc--CCCHHH
Q 010864 287 AIQLQ--FDFHRA 297 (498)
Q Consensus 287 Al~l~--P~~~~a 297 (498)
...+. ..++.+
T Consensus 165 ~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 165 IAQLANQRGDPAV 177 (608)
T ss_pred HHHHhhhcCCHHH
Confidence 88875 455443
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.94 E-value=8.3 Score=37.84 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=59.3
Q ss_pred hhcHHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHH
Q 010864 113 AEQNNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEAC 192 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~ 192 (498)
.+..+-...++.+.++.....+...|.+.+|+++.++++.++|-+...+..+-.+|..+|+ --.++
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD--------------~is~~ 333 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD--------------EISAI 333 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc--------------chhhh
Confidence 3455566677777776666668889999999999999999999999999999999999999 66666
Q ss_pred HHHHHH
Q 010864 193 KKYDEA 198 (498)
Q Consensus 193 ~~~~~A 198 (498)
+.|++.
T Consensus 334 khyery 339 (361)
T COG3947 334 KHYERY 339 (361)
T ss_pred hHHHHH
Confidence 666654
No 389
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.77 E-value=1.4 Score=36.76 Aligned_cols=79 Identities=22% Similarity=0.305 Sum_probs=53.1
Q ss_pred hhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC---CCCeeeEeecCCce
Q 010864 384 SDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP---PGAGLCIETIHGPV 460 (498)
Q Consensus 384 ~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~~~ 460 (498)
..|+|....||...+.-.....+ ..--.-|||.+|.+|+.+....+| +.+.|.|.| +--+
T Consensus 14 ~~rKRhYWrLDsK~Itlf~~e~~----------------skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~v 76 (117)
T cd01239 14 NRRKKHYWRLDSKAITLYQEESG----------------SRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNV 76 (117)
T ss_pred cceeeeEEEecCCeEEEEEcCCC----------------CeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEE
Confidence 35777777888766654322111 123558999999999988776443 777899998 5567
Q ss_pred eeeecC---------------------hhhhhhHHHHHHH
Q 010864 461 FLVADS---------------------WEALDGWLDAIRL 479 (498)
Q Consensus 461 ~~~~~~---------------------~~~~~~~~~a~~~ 479 (498)
|+|-.+ -+.+..|-.||+.
T Consensus 77 Y~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~q 116 (117)
T cd01239 77 YFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQ 116 (117)
T ss_pred EEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhc
Confidence 888442 2234679999985
No 390
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.66 E-value=1.5 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHH
Q 010864 159 DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYD 196 (498)
Q Consensus 159 ~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~ 196 (498)
.+++++|.++..+|+ +++|...++
T Consensus 2 ~a~~~la~~~~~~G~--------------~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGD--------------PDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHh
Confidence 578899999999999 999998876
No 391
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.13 E-value=4 Score=26.68 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH--HHHHHHhcCCC
Q 010864 252 QALNNWGLALQELSAIVPAREKQTIVRTAISK--FRAAIQLQFDF 294 (498)
Q Consensus 252 ~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~--~~~Al~l~P~~ 294 (498)
+.++.+|..++..|++ ++|+.. |+-+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence 4678899999999999 999999 65888877764
No 392
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.86 E-value=8.5 Score=37.82 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHH
Q 010864 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKF 284 (498)
Q Consensus 205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~ 284 (498)
...++..++..+.. .|+++.++ ..+++.+.++|-+-.+|..+-.+|...|+. ..|+..|
T Consensus 152 ~~~~l~~lae~~~~----~~~~~~~~-------~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y 210 (280)
T COG3629 152 FIKALTKLAEALIA----CGRADAVI-------EHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAY 210 (280)
T ss_pred HHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHH
Confidence 34677788888888 88888888 799999999999999999999999999999 9999999
Q ss_pred HHHHHh
Q 010864 285 RAAIQL 290 (498)
Q Consensus 285 ~~Al~l 290 (498)
++.-.+
T Consensus 211 ~~l~~~ 216 (280)
T COG3629 211 RQLKKT 216 (280)
T ss_pred HHHHHH
Confidence 987664
No 393
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=81.77 E-value=2.6 Score=35.67 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCeeeEeecCCce-eeeecChhhhhhHHHHHHHHHHHH
Q 010864 447 PGAGLCIETIHGPV-FLVADSWEALDGWLDAIRLVYTIY 484 (498)
Q Consensus 447 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~ 484 (498)
+-++|+|.|..|.. .|-|.|.+++..|+++|..+...+
T Consensus 76 r~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 76 KPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAF 114 (117)
T ss_pred CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 78899999988766 667889999999999999987653
No 394
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=81.44 E-value=4.3 Score=31.18 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWN 249 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~ 249 (498)
.|++++|+.+|.+|+..|.+++...|+
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAEKE 45 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999988876
No 395
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=81.38 E-value=25 Score=34.59 Aligned_cols=78 Identities=15% Similarity=0.002 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010864 190 EACKKYDEATRLCPTLHDAFYNWAIAISDRAKM-----------RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWG 258 (498)
Q Consensus 190 ~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~-----------~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg 258 (498)
.-...++.-++.+|++..++..+|..+.+.+.. ..++..+..+.++|+..+.+|++++|....+...+-
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~ 140 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMI 140 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 356666777888999999999999999987532 123344556778999999999999999999999998
Q ss_pred HHHHHhcCc
Q 010864 259 LALQELSAI 267 (498)
Q Consensus 259 ~~l~~~g~~ 267 (498)
.+-...|..
T Consensus 141 ~~s~~fgeP 149 (277)
T PF13226_consen 141 NISAYFGEP 149 (277)
T ss_pred HHHhhcCCc
Confidence 888888876
No 396
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=81.35 E-value=2.6 Score=35.78 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=47.7
Q ss_pred CchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCCCCeeeEeecCCcee
Q 010864 382 PHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVF 461 (498)
Q Consensus 382 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 461 (498)
....|..++.+|...-|.-.....+....... .........+-..|+|. ..-++...|-+- +-++|++.|..|..|
T Consensus 22 ~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~--~~~~~~~~~p~~~i~L~-~a~a~~a~dY~K-r~~VFrL~~~dg~e~ 97 (119)
T PF15410_consen 22 SKRSWKQVYAVLQGGQLYFYKDEKSPASSTPP--DIQSVENAKPDSSISLH-HALAEIASDYTK-RKNVFRLRTADGSEY 97 (119)
T ss_dssp S---EEEEEEEEETTEEEEESSHHHHCCT-BS-----SS--E-----EE-T-T-EEEEETTBTT-CSSEEEEE-TTS-EE
T ss_pred CCCCccEEeEEEECCEEEEEccCcccccCCcc--cccccccCcceeEEEec-ceEEEeCccccc-CCeEEEEEeCCCCEE
Confidence 45689999999866555433332221100000 00000001112234443 222333555554 899999999999886
Q ss_pred e-eecChhhhhhHHHHHHHH
Q 010864 462 L-VADSWEALDGWLDAIRLV 480 (498)
Q Consensus 462 ~-~~~~~~~~~~~~~a~~~~ 480 (498)
| -|.|.+++..|+++|-.+
T Consensus 98 Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 98 LFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp EEE-SSHHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHhhh
Confidence 5 577999999999999765
No 397
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.39 E-value=16 Score=27.41 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWN 249 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~ 249 (498)
.|++++|+++|.+|+..+.+++...++
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~~ 44 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSESN 44 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998864
No 398
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=79.55 E-value=86 Score=32.95 Aligned_cols=115 Identities=15% Similarity=0.009 Sum_probs=76.2
Q ss_pred HHhhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHH--HHHHHHHh---------
Q 010864 134 RSRQRI-LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACK--KYDEATRL--------- 201 (498)
Q Consensus 134 ~~~~g~-~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~--~~~~Al~l--------- 201 (498)
+.+.|. -++|+..++.+++..+.+.+.-+.. +..-++ .|.+|+. .+.+.+.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v---~~fvKq-------------~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIV---FLFVKQ-------------AYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHH---HHHHHH-------------HHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 445555 7889999999999998887544332 211111 1444432 23333333
Q ss_pred CC---CCHHHHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhh
Q 010864 202 CP---TLHDAFYNWAIA--ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTI 276 (498)
Q Consensus 202 ~p---~~~~a~~~lg~~--~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~ 276 (498)
.| .+.+.-+.|+.+ +.. +|+|.++. -+-.-..++.| ++.++..+|.++....+|
T Consensus 453 ~~i~i~e~eian~LaDAEyLys----qgey~kc~-------~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y--------- 511 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYS----QGEYHKCY-------LYSSWLTKIAP-SPQAYRLLGLCLMENKRY--------- 511 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHh----cccHHHHH-------HHHHHHHHhCC-cHHHHHHHHHHHHHHhhH---------
Confidence 22 234455555444 334 88888888 45566678899 999999999999999999
Q ss_pred HHHHHHHHHH
Q 010864 277 VRTAISKFRA 286 (498)
Q Consensus 277 ~~~Ai~~~~~ 286 (498)
++|-.++..
T Consensus 512 -~eA~~~l~~ 520 (549)
T PF07079_consen 512 -QEAWEYLQK 520 (549)
T ss_pred -HHHHHHHHh
Confidence 999888865
No 399
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.51 E-value=2.3 Score=42.63 Aligned_cols=111 Identities=18% Similarity=0.025 Sum_probs=85.2
Q ss_pred HHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCC-------------------CCHHHHHHHHHHHHHHHHHc
Q 010864 163 NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCP-------------------TLHDAFYNWAIAISDRAKMR 223 (498)
Q Consensus 163 ~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p-------------------~~~~a~~~lg~~~~~~~~~~ 223 (498)
+.|.-.+..++ |+.|..-|.++++.-- .-...+.|++.+-.. .
T Consensus 227 ~~~~~~~kk~~--------------~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk----~ 288 (372)
T KOG0546|consen 227 NIGNKEFKKQR--------------YREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLK----V 288 (372)
T ss_pred ccchhhhhhcc--------------HhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhccc----c
Confidence 34555666777 8888888888876511 112345667777777 7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 010864 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGT 303 (498)
Q Consensus 224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~ 303 (498)
+.+..|+ .....+++.++....+++..|..+..+.++ ++|+..++.+....|++..+...+..
T Consensus 289 ~~~~~a~-------~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~----------~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 289 KGRGGAR-------FRTNEALRDERSKTKAHYRRGQAYKLLKNY----------DEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cCCCcce-------eccccccccChhhCcHHHHHHhHHHhhhch----------hhhHHHHHHhhccCcchHHHHHHHHH
Confidence 7777777 566667778999999999999999999999 99999999999999999988776665
Q ss_pred HHHHc
Q 010864 304 VLYGL 308 (498)
Q Consensus 304 ~~~~~ 308 (498)
+-...
T Consensus 352 ~~~~~ 356 (372)
T KOG0546|consen 352 VRQKK 356 (372)
T ss_pred hhhHH
Confidence 54433
No 400
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.99 E-value=29 Score=35.92 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhCC--------C-----CH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864 188 LEEACKKYDEATRLCP--------T-----LH-----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p--------~-----~~-----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~ 249 (498)
|..|+.-|..||++.. . +. -+-..|..||.. +++.+-|+ ..-.+.+-++|.
T Consensus 192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~----~rkpdlAL-------nh~hrsI~lnP~ 260 (569)
T PF15015_consen 192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLR----MRKPDLAL-------NHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhh----cCCCchHH-------HHHhhhhhcCcc
Confidence 7778877887777722 1 11 233577888988 99999999 688899999999
Q ss_pred CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHH
Q 010864 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAA 287 (498)
Q Consensus 250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~A 287 (498)
+..-+..-+.++..+.+| .+|-..+--|
T Consensus 261 ~frnHLrqAavfR~LeRy----------~eAarSamia 288 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERY----------SEAARSAMIA 288 (569)
T ss_pred hhhHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 999999999999999999 7766555444
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.80 E-value=61 Score=40.66 Aligned_cols=152 Identities=18% Similarity=0.043 Sum_probs=101.5
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC--------HH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL--------HD 207 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~--------~~ 207 (498)
..|+++.|..+.-+|.+.. -+.++..+|..++..|+ -..|+..+++.++++-.+ +.
T Consensus 1682 ~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd--------------~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1682 LAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGD--------------ELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred hcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhcc--------------HHHHHHHHHHHHHhhcccccCCccccch
Confidence 3688999999888888876 67899999999999999 999999999999774222 11
Q ss_pred --HHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC--cchHHhhhhhHHH--
Q 010864 208 --AFYNWAIAISDRAKMRGRTKEAEELW--KQATKNYEKAVQLNWNSPQALNNWGLALQELSA--IVPAREKQTIVRT-- 279 (498)
Q Consensus 208 --a~~~lg~~~~~~~~~~g~~~eA~~~~--~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~--~~~a~~~~~~~~~-- 279 (498)
-..-.+.+... .++|.+.-.++ .+-++.|..+.++.|.....++.+|.-|.+.-. ....+++.|++..
T Consensus 1746 ~~n~~i~~~~~L~----~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLK----ITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred hhhhhhhhhHHHH----HHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence 01111122323 33444433333 345689999999999988889999855443321 1122667777777
Q ss_pred -HHHHHHHHHHhcCCC--------HHHHHHHHHHHHH
Q 010864 280 -AISKFRAAIQLQFDF--------HRAIYNLGTVLYG 307 (498)
Q Consensus 280 -Ai~~~~~Al~l~P~~--------~~a~~~Lg~~~~~ 307 (498)
++..|.+++...-.+ -..|..+|..+..
T Consensus 1822 ~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred HHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 778888888765333 3345555555444
No 402
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.25 E-value=5.9 Score=31.00 Aligned_cols=43 Identities=14% Similarity=0.273 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW 248 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P 248 (498)
.|++|.+...+||..+ . .|+.++|+.+|++++..+.+.+.+.-
T Consensus 4 ~~~~A~~~I~kaL~~d---------------E----~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 4 YYKQAFEEISKALRAD---------------E----WGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHHHHHHHHhhhh---------------h----cCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4777777777776655 4 89999999999999999999998763
No 403
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.59 E-value=1.2e+02 Score=32.90 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=93.7
Q ss_pred ccHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864 138 RILTFAAKRYANAIER------------NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---- 201 (498)
Q Consensus 138 g~~~~A~~~~~~al~~------------~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---- 201 (498)
..|.+|...|.-+... .|-+.+.+..++.+...+|+ -....+..++++-.+++|+.-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD-------~e~aadLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGD-------REMAADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHHhcccccc
Confidence 5678888888877654 37778999999999999998 112233456666666666542
Q ss_pred ----------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-hcCcch
Q 010864 202 ----------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN-SPQALNNWGLALQE-LSAIVP 269 (498)
Q Consensus 202 ----------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~-~~~a~~~lg~~l~~-~g~~~~ 269 (498)
.|.|-..|..|=. |+..+...| +|+.|+..++-.+.++|. ++-+...+-.+|.- ..+|
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r-~m~~l~~RG-------C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareY-- 394 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFR-YMQSLAQRG-------CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREY-- 394 (665)
T ss_pred ccccccCcccchhhHHHHHHHHH-HHHHHHhcC-------ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhH--
Confidence 2222222222111 111111144 455555799999999998 77665555555443 3344
Q ss_pred HHhhhhhHHHHHHHHHHH-----HHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 010864 270 AREKQTIVRTAISKFRAA-----IQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALK 344 (498)
Q Consensus 270 a~~~~~~~~~Ai~~~~~A-----l~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 344 (498)
+=-|..++.. +..-|++ -|.++.+++.+.... ...-..|...+.+|+.+.
T Consensus 395 --------qwiI~~~~~~e~~n~l~~~PN~---~yS~AlA~f~l~~~~--------------~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 395 --------QWIIELSNEPENMNKLSQLPNF---GYSLALARFFLRKNE--------------EDDRQSALNALLQALKHH 449 (665)
T ss_pred --------HHHHHHHHHHHhhccHhhcCCc---hHHHHHHHHHHhcCC--------------hhhHHHHHHHHHHHHHhC
Confidence 4444444443 2334554 355555555444311 012355666677777777
Q ss_pred C
Q 010864 345 P 345 (498)
Q Consensus 345 p 345 (498)
|
T Consensus 450 P 450 (665)
T KOG2422|consen 450 P 450 (665)
T ss_pred c
Confidence 7
No 404
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=76.49 E-value=48 Score=28.39 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=29.4
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESA 172 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g 172 (498)
.+.....+.+++..+..++.++..+..+..+|....
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 20 RNLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred CCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 356778889999999888888888888888887654
No 405
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.86 E-value=7.7 Score=23.50 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALV 167 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 167 (498)
|+.+.+...|++++...|.+...|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 457889999999999999999999887654
No 406
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.83 E-value=12 Score=34.85 Aligned_cols=71 Identities=15% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHH
Q 010864 141 TFAAKRYANAIER-NPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT----LHDAFYNWAIA 215 (498)
Q Consensus 141 ~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~----~~~a~~~lg~~ 215 (498)
+.|...|-++-.. .-++++..+.||..|... + .++|+..|.++|++... +++.+..|+.+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr-D--------------~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR-D--------------PEKTIQLLLRALELSNPDDNFNPEILKSLASI 187 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc-C--------------HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 3455444443211 125788899999888754 3 89999999999999544 68999999999
Q ss_pred HHHHHHHcCCHHHHH
Q 010864 216 ISDRAKMRGRTKEAE 230 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~ 230 (498)
+.. +|+++.|-
T Consensus 188 ~~~----~~~~e~AY 198 (203)
T PF11207_consen 188 YQK----LKNYEQAY 198 (203)
T ss_pred HHH----hcchhhhh
Confidence 999 99998875
No 407
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.90 E-value=88 Score=30.62 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=42.6
Q ss_pred hccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 137 QRILTFAAKRYANAIERNPEDY----DALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
..+.++|+..|++++++.+.-. .++...-.+++.+++ |++-+..|.+.|..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~--------------~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGN--------------YKEMMERYKQLLTY 94 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHH
Confidence 4578899999999999998764 467788888999998 99988888888765
No 408
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.94 E-value=49 Score=32.28 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC
Q 010864 187 LLEEACKKYDEATRLCPTLH----DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN 249 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~----~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~ 249 (498)
..++|+..|++.+++.+.-. .++..+-.+++. +|++++-++.|.+-+.+.+.|+..+-.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~----l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFR----LGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 38999999999999998754 355566666777 999999999999999999988877643
No 409
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.88 E-value=10 Score=29.31 Aligned_cols=44 Identities=27% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864 188 LEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~ 252 (498)
+++|+....+|+..+ . .|++++|+.+|.+|+..|.. +.+|....
T Consensus 3 l~kai~Lv~~A~~eD---------------~----~gny~eA~~lY~~ale~~~~--ekn~~~k~ 46 (75)
T cd02680 3 LERAHFLVTQAFDED---------------E----KGNAEEAIELYTEAVELCIN--TSNETMDQ 46 (75)
T ss_pred HHHHHHHHHHHHHhh---------------H----hhhHHHHHHHHHHHHHHHHH--hcChhhHH
Confidence 667888888876544 3 89999999999999999987 44555443
No 410
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.54 E-value=34 Score=35.81 Aligned_cols=117 Identities=14% Similarity=0.021 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHcCCH-------H
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL------HDAFYNWAIAISDRAKMRGRT-------K 227 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~------~~a~~~lg~~~~~~~~~~g~~-------~ 227 (498)
...||..++.+++ |+-|...|+.+.+-.-++ +.++-..|.++.. .+.. +
T Consensus 211 ~R~LAD~aFml~D--------------y~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~----~~~~~~~k~~~~ 272 (414)
T PF12739_consen 211 MRRLADLAFMLRD--------------YELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLM----QGQSISAKIRKD 272 (414)
T ss_pred HHHHHHHHHHHcc--------------HHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHh----cCCCCccccccc
Confidence 5678999999999 999999999888753322 2233334444444 5533 3
Q ss_pred HHHHHHHHHHHHHHHH----HhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--c--CC---CHH
Q 010864 228 EAEELWKQATKNYEKA----VQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--Q--FD---FHR 296 (498)
Q Consensus 228 eA~~~~~~Al~~~~~A----l~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--~--P~---~~~ 296 (498)
+....++.|+..|.++ ......-..+....+.++...|.+ .+|...+-+.... . -. .+.
T Consensus 273 ~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~----------~~a~~~~~~~~~~~l~~~l~~~~~al 342 (414)
T PF12739_consen 273 EIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGY----------WEAADQLIRWTSEILESDLRPFGSAL 342 (414)
T ss_pred cHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCcc----------HHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence 6667788898999884 222234456778888888889998 6666665555544 2 22 445
Q ss_pred HHHHHHHHH
Q 010864 297 AIYNLGTVL 305 (498)
Q Consensus 297 a~~~Lg~~~ 305 (498)
.+-+++.+|
T Consensus 343 llE~~a~~~ 351 (414)
T PF12739_consen 343 LLEQAAYCY 351 (414)
T ss_pred HHHHHHHhh
Confidence 666777777
No 411
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=73.50 E-value=81 Score=33.11 Aligned_cols=79 Identities=8% Similarity=0.058 Sum_probs=60.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcC
Q 010864 145 KRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRG 224 (498)
Q Consensus 145 ~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g 224 (498)
-.|++++..-|-.++.|+.....+...++ -++|+....+++...|. .+..++..|.. ..
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd--------------~q~al~tv~rg~~~sps---L~~~lse~yel----~n 347 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISD--------------KQKALKTVERGIEMSPS---LTMFLSEYYEL----VN 347 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccH--------------HHHHHHHHHhcccCCCc---hheeHHHHHhh----cc
Confidence 35788888889999999999999999998 89999999888888877 55666666665 66
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q 010864 225 RTKEAEELWKQATKNYEKAV 244 (498)
Q Consensus 225 ~~~eA~~~~~~Al~~~~~Al 244 (498)
+-++-..+|++++..+.+-+
T Consensus 348 d~e~v~~~fdk~~q~L~r~y 367 (660)
T COG5107 348 DEEAVYGCFDKCTQDLKRKY 367 (660)
T ss_pred cHHHHhhhHHHHHHHHHHHH
Confidence 66666666766665554433
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.44 E-value=65 Score=31.32 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=51.3
Q ss_pred hhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-----CCCCHHHHH
Q 010864 136 RQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-----CPTLHDAFY 210 (498)
Q Consensus 136 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-----~p~~~~a~~ 210 (498)
++++|++|++.+... +..+.+.++ +.-|.+...-.++. .+.+....-
T Consensus 2 ~~kky~eAidLL~~G--------------a~~ll~~~Q--------------~~sg~DL~~lliev~~~~~~~~~~~~~~ 53 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG--------------ALILLKHGQ--------------YGSGADLALLLIEVYEKSEDPVDEESIA 53 (260)
T ss_dssp HTT-HHHHHHHHHHH--------------HHHHHHTT---------------HHHHHHHHHHHHHHHHHTT---SHHHHH
T ss_pred ccccHHHHHHHHHHH--------------HHHHHHCCC--------------cchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 467788888776554 444555555 44444333333222 233444456
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH
Q 010864 211 NWAIAISDRAKMRGRTKEAEE-LWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPA 270 (498)
Q Consensus 211 ~lg~~~~~~~~~~g~~~eA~~-~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a 270 (498)
++..++.. .+.-+.... ..++|++.- +.-...-.++..+..+|..|++.|++.+|
T Consensus 54 rl~~l~~~----~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A 109 (260)
T PF04190_consen 54 RLIELISL----FPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEA 109 (260)
T ss_dssp HHHHHHHH----S-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHh----CCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHH
Confidence 66666665 544332233 223344444 22122234889999999999999999444
No 413
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=71.87 E-value=7.7 Score=31.78 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=35.2
Q ss_pred ccccCCcccccccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864 427 IRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
..|+|.++ .++...+ .+..++|.|.+..-..+|.|+|.++.+.|.+||.-+.
T Consensus 48 ~~i~l~~~-~v~~~~~--~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i 99 (101)
T cd01219 48 ARIDVSGM-QVCEGDN--LERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSII 99 (101)
T ss_pred EEEecccE-EEEeCCC--CCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 35666653 2332222 3345678887655556899999999999999998663
No 414
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=71.46 E-value=66 Score=40.38 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 155 PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 155 P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
....+.|.+.|.+-...|. ++.|-.+.-.|.+.. -+.++...+..+.. .|+-..|+..++
T Consensus 1667 ~~~ge~wLqsAriaR~aG~--------------~q~A~nall~A~e~r--~~~i~~E~AK~lW~----~gd~~~Al~~Lq 1726 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGH--------------LQRAQNALLNAKESR--LPEIVLERAKLLWQ----TGDELNALSVLQ 1726 (2382)
T ss_pred chhHHHHHHHHHHHHhccc--------------HHHHHHHHHhhhhcc--cchHHHHHHHHHHh----hccHHHHHHHHH
Confidence 3457889999999888898 999999999998877 56788899999988 999999995444
Q ss_pred HHHHHHHHHHhcC----CCC------HHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 235 QATKNYEKAVQLN----WNS------PQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (498)
Q Consensus 235 ~Al~~~~~Al~l~----P~~------~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~ 304 (498)
+-+..+.--+.-. |.. ..+...++....+.|++ -.++-+.+|..+.++.|....-+|.||.-
T Consensus 1727 ~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~--------~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1727 EILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNF--------ESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred HHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcch--------hHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 4432222221111 111 11222333333333333 23566789999999999999999999966
Q ss_pred HHHcc
Q 010864 305 LYGLA 309 (498)
Q Consensus 305 ~~~~g 309 (498)
|.+.-
T Consensus 1799 y~kll 1803 (2382)
T KOG0890|consen 1799 YDKLL 1803 (2382)
T ss_pred HHHHh
Confidence 55443
No 415
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=71.23 E-value=7.4 Score=31.72 Aligned_cols=89 Identities=15% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC-CCCeeeEeecCC
Q 010864 380 VAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP-PGAGLCIETIHG 458 (498)
Q Consensus 380 ~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~ 458 (498)
......|.+|.++|-...-....-...+. . --+..+++.|+...|..|+.|--+-+| .-..|.+.-..+
T Consensus 15 ~~~~~~WqkcRl~L~~~~gg~~le~~~~~-----p-----PKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~ 84 (107)
T cd01231 15 MDSGARWQRGRLVLRKAVGGYMLEFYLPL-----P-----PKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDN 84 (107)
T ss_pred CCCccccceeeEEEEecCCCceEEEEccC-----C-----CCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCC
Confidence 33456899999988542211111100000 0 001235778999999999999999999 545555552222
Q ss_pred -ceeeeecChhhhhhHHHHHH
Q 010864 459 -PVFLVADSWEALDGWLDAIR 478 (498)
Q Consensus 459 -~~~~~~~~~~~~~~~~~a~~ 478 (498)
...+-++|...+..|.-.|+
T Consensus 85 ~eyI~Ea~d~~q~~SWla~Ir 105 (107)
T cd01231 85 TDIIFEVGDEQQLNSWLAELR 105 (107)
T ss_pred ceEEEEcCCHHHHHHHHHHHh
Confidence 34677889999999999886
No 416
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.70 E-value=24 Score=34.72 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY 240 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~ 240 (498)
+...+..|...|. +.+|+...++++.++|-+...+..|-.+|.. +|+--.+.+.|++--+..
T Consensus 282 lgkva~~yle~g~--------------~neAi~l~qr~ltldpL~e~~nk~lm~~la~----~gD~is~~khyerya~vl 343 (361)
T COG3947 282 LGKVARAYLEAGK--------------PNEAIQLHQRALTLDPLSEQDNKGLMASLAT----LGDEISAIKHYERYAEVL 343 (361)
T ss_pred HHHHHHHHHHcCC--------------hHHHHHHHHHHhhcChhhhHHHHHHHHHHHH----hccchhhhhHHHHHHHHH
Confidence 3344566677777 9999999999999999999999999999999 999999998776655555
Q ss_pred HHHHhcCC
Q 010864 241 EKAVQLNW 248 (498)
Q Consensus 241 ~~Al~l~P 248 (498)
++-+.++-
T Consensus 344 eaelgi~v 351 (361)
T COG3947 344 EAELGIDV 351 (361)
T ss_pred HHHhCCCc
Confidence 55555553
No 417
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=69.93 E-value=16 Score=37.39 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcc--hHHhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHH
Q 010864 229 AEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIV--PAREKQTIVRTAISKFRAAIQL-QFDFHRAIYNL 301 (498)
Q Consensus 229 A~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~--~a~~~~~~~~~Ai~~~~~Al~l-~P~~~~a~~~L 301 (498)
|.++..+|+.++++|.. -+.+++|.+++.++..+|+.- +..++.+-+++|...+++|=.. +-.+..++.||
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy~diLdnL 403 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKYQDILDNL 403 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccchHHHHhhc
Confidence 45566788899998875 568899999999999999873 3355778899999999998765 33444555443
No 418
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.72 E-value=99 Score=32.67 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCc
Q 010864 202 CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV--QLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 202 ~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al--~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
.-++...|..||..... +|+++-|+++|+++- .|.+.+ -.--.+..-+..++......|++
T Consensus 343 ~~~~~~~W~~Lg~~AL~----~g~~~lAe~c~~k~~-d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~ 405 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALR----QGNIELAEECYQKAK-DFSGLLLLYSSTGDREKLSKLAKIAEERGDI 405 (443)
T ss_dssp CCSTHHHHHHHHHHHHH----TTBHHHHHHHHHHCT--HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H
T ss_pred hcCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhc-CccccHHHHHHhCCHHHHHHHHHHHHHccCH
Confidence 34578899999999999 999999997555543 222221 12233445555555555555554
No 419
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=69.49 E-value=9.5 Score=31.77 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=33.1
Q ss_pred ccccCCCCCCCCeeeEeecCC--ceeeeecChhhhhhHHHHHH
Q 010864 438 SACADLTLPPGAGLCIETIHG--PVFLVADSWEALDGWLDAIR 478 (498)
Q Consensus 438 ~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~ 478 (498)
.+..|+..+.-..|+++|+++ .+||..++-+++..|..||-
T Consensus 64 ~~~~~~~~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv 106 (108)
T cd01258 64 SSTRRLNDQRDNCFLIRTGTQVENHYLRVETHRDLASWERALV 106 (108)
T ss_pred CCccCcCCCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHh
Confidence 344455566778999999998 34999999999999999984
No 420
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.40 E-value=11 Score=22.75 Aligned_cols=29 Identities=7% Similarity=-0.052 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 276 IVRTAISKFRAAIQLQFDFHRAIYNLGTV 304 (498)
Q Consensus 276 ~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~ 304 (498)
+.+.|...|++++...|.+...|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45899999999999999999999876654
No 421
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.44 E-value=2.2e+02 Score=32.51 Aligned_cols=112 Identities=20% Similarity=-0.015 Sum_probs=81.0
Q ss_pred HhhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC
Q 010864 135 SRQRILTFAAKRYANAIERNPE---------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL 205 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~---------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~ 205 (498)
..+.++++|..+..++...-+. .++.....|.+....|+ +++|++..+.++..-|.+
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~--------------~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD--------------PEEAEDLARLALVQLPEA 491 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhcccc
Confidence 4568899999988888765433 23555667888888898 999999999999987764
Q ss_pred -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCc
Q 010864 206 -----HDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN--SPQALNNWGLALQELSAI 267 (498)
Q Consensus 206 -----~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~ 267 (498)
..++..+|.+..- +|++.+|..+-+++.+..++ .+-- ...+.+..+.++..+|+.
T Consensus 492 ~~~~r~~~~sv~~~a~~~----~G~~~~Al~~~~~a~~~a~~---~~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 492 AYRSRIVALSVLGEAAHI----RGELTQALALMQQAEQMARQ---HDVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred cchhhhhhhhhhhHHHHH----hchHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHhhHH
Confidence 4578889999998 99999999655555443322 1222 234455667888888844
No 422
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.24 E-value=8.3 Score=32.17 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=49.9
Q ss_pred chhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCc--cccccccc-CCCCCCCCeeeEeecC--
Q 010864 383 HSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPD--IVSVSACA-DLTLPPGAGLCIETIH-- 457 (498)
Q Consensus 383 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~p~~~~~~~~~~~-- 457 (498)
...|.+.+|+|...++-...+..+.. +..-..-+.+++ |=..-... -..-|-.++|++.-..
T Consensus 13 kKsWKk~~f~LR~SGLYy~~Kgksk~-------------srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q 79 (114)
T cd01259 13 KKSWKKYYFVLRSSGLYYFPKEKTKN-------------TRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQ 79 (114)
T ss_pred CccceEEEEEEeCCeeEEccCCCcCC-------------HHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccC
Confidence 45799999999887777654443321 111011111111 11111111 1466777888885221
Q ss_pred C--c--e-eeeecChhhhhhHHHHHHHH
Q 010864 458 G--P--V-FLVADSWEALDGWLDAIRLV 480 (498)
Q Consensus 458 ~--~--~-~~~~~~~~~~~~~~~a~~~~ 480 (498)
+ + + ||-|+|..++.-|+.|||+.
T Consensus 80 ~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 80 SKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred cccchhheeeccCCHHHHHHHHHHHHHH
Confidence 1 1 2 99999999999999999985
No 423
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=66.45 E-value=1.2e+02 Score=31.26 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCC-----HHHHHHHHHHHHHhcCcchH--------
Q 010864 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAV-QLNWNS-----PQALNNWGLALQELSAIVPA-------- 270 (498)
Q Consensus 205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~-----~~a~~~lg~~l~~~g~~~~a-------- 270 (498)
+.......+.+|..+++.-.+.+.-+++.++=+..++..+ .++|++ -+.|+-+|.+|..+=+..-.
T Consensus 170 hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~ 249 (371)
T PF12309_consen 170 HVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQND 249 (371)
T ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4566677788887777778888888888888888888777 566753 35678888887765433111
Q ss_pred ---------HhhhhhHHHHHHHHHHHHHh--cCC---------------CHHHHHHHHHHHHHcchhHHhccCCCCCCCC
Q 010864 271 ---------REKQTIVRTAISKFRAAIQL--QFD---------------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREV 324 (498)
Q Consensus 271 ---------~~~~~~~~~Ai~~~~~Al~l--~P~---------------~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~ 324 (498)
..-......|+.+|+.-+.. .|+ ...+++++|.+|.+.-- +...
T Consensus 250 ~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~----------~~~~ 319 (371)
T PF12309_consen 250 NEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLIT----------SDPK 319 (371)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccC----------CChH
Confidence 01234567788888888775 333 13467778887776621 0011
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHccC
Q 010864 325 SPNELYSQSAIYIAAAHALKPSYS----VYSSALRLVRSML 361 (498)
Q Consensus 325 ~~~~~~~~A~~~~~~Al~l~p~~~----~~~~~l~~~~~~l 361 (498)
...+.+..+..+|+....+--.++ .+..-+.+.+.|+
T Consensus 320 ~~~~~l~~sl~~y~~vv~y~~~~~~~~~~~~~El~l~~EM~ 360 (371)
T PF12309_consen 320 EQLENLEKSLEYYKWVVDYCEKHPEAAEEFEEELELCREMV 360 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHH
Confidence 123357888888888877654444 3345556666554
No 424
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=66.29 E-value=5.5 Score=43.35 Aligned_cols=97 Identities=20% Similarity=0.303 Sum_probs=68.9
Q ss_pred hccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCCC
Q 010864 368 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLPP 447 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 447 (498)
.|.+.-.+.+...-....|+.+||.|..+.+...- ..| .-..-.|||.+|.+|+-..+-|.--
T Consensus 568 ~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-------------sp~----~q~~~~Ipl~nI~avEklee~sF~~ 630 (800)
T KOG2059|consen 568 EGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-------------SPG----KQPIYTIPLSNIRAVEKLEEKSFKM 630 (800)
T ss_pred ccceEeccccccchhhhhhhheEEEeccceeEEec-------------CCc----cCcccceeHHHHHHHHHhhhhccCC
Confidence 44444333332223336788899999887765411 111 1246689999999999999988886
Q ss_pred CCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864 448 GAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
-+.|.|=+..-+.|+-|.+-..+.+|.|||+=+.
T Consensus 631 knv~qVV~~drtly~Q~~n~vEandWldaL~kvs 664 (800)
T KOG2059|consen 631 KNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVS 664 (800)
T ss_pred CceEEEEecCcceeEecCCchHHHHHHHHHHHHh
Confidence 7777765555578999999999999999998665
No 425
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=65.98 E-value=46 Score=35.08 Aligned_cols=83 Identities=18% Similarity=0.076 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864 185 DALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQEL 264 (498)
Q Consensus 185 ~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~ 264 (498)
.|++..|-.-...+|+-.|.++......+.+... +|.|+.+..+... .++++. .-..+...+-.-+..+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~----lg~ye~~~~~~s~----~~~~~~---s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSH----LGYYEQAYQDISD----VEKIIG---TTDSTLRCRLRSLHGL 370 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHH----hhhHHHHHHHhhc----hhhhhc---CCchHHHHHHHhhhch
Confidence 3557777777777777788887777777788888 8888877743321 222222 1223333334445566
Q ss_pred cCcchHHhhhhhHHHHHHHHHHHH
Q 010864 265 SAIVPAREKQTIVRTAISKFRAAI 288 (498)
Q Consensus 265 g~~~~a~~~~~~~~~Ai~~~~~Al 288 (498)
|++ ++|...-.-.+
T Consensus 371 ~r~----------~~a~s~a~~~l 384 (831)
T PRK15180 371 ARW----------REALSTAEMML 384 (831)
T ss_pred hhH----------HHHHHHHHHHh
Confidence 666 66655544444
No 426
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=65.71 E-value=13 Score=30.33 Aligned_cols=53 Identities=9% Similarity=0.166 Sum_probs=36.2
Q ss_pred cccccCCcccccccccC-CCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864 426 AIRIEVPDIVSVSACAD-LTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 426 ~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
...+||+.+. |+...| ..+| ++|.|-+..-...|.|.|.++.+.|.++|.-+-
T Consensus 44 ~~~i~L~~~~-V~~~~~~~~~~--~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI 97 (99)
T cd01220 44 LGHLPLRGML-TEESEHEWGVP--HCFTIFGGQCAITVAASTRAEKEKWLADLSKAI 97 (99)
T ss_pred EEEEEcCceE-EeeccCCcCCc--eeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 4567787765 444444 3444 466666444446889999999999999997653
No 427
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=64.34 E-value=1.5e+02 Score=30.73 Aligned_cols=126 Identities=12% Similarity=-0.040 Sum_probs=78.9
Q ss_pred HhhccHHHHHHHHHHHHHh-CCC--------CHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh----
Q 010864 135 SRQRILTFAAKRYANAIER-NPE--------DYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL---- 201 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~-~P~--------~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l---- 201 (498)
..+++|.+|..+-+..+.. .-. .+..|+.+..+|...|+ +..-...+..-++.
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~--------------l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGR--------------LADIRSFLHALLRTATLR 202 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc--------------hHHHHHHHHHHHHHhhhc
Confidence 3467888888776665532 111 24567777778877777 55555555554443
Q ss_pred -CCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHhcCcchHHhhhh
Q 010864 202 -CPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ--LNW--NSPQALNNWGLALQELSAIVPAREKQT 275 (498)
Q Consensus 202 -~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~--l~P--~~~~a~~~lg~~l~~~g~~~~a~~~~~ 275 (498)
+.. -+...+.|=..|.. .+.|+.|. +...+..- ... ..+..++.+|.+..-+++|
T Consensus 203 hd~e~qavLiN~LLr~yL~----n~lydqa~-------~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldY-------- 263 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLH----NKLYDQAD-------KLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDY-------- 263 (493)
T ss_pred CcchhHHHHHHHHHHHHhh----hHHHHHHH-------HHhhcccCccccccHHHHHHHHHHhhHHHhhcch--------
Confidence 111 12233444445555 66666666 44444431 111 2355678888898888998
Q ss_pred hHHHHHHHHHHHHHhcCCCH
Q 010864 276 IVRTAISKFRAAIQLQFDFH 295 (498)
Q Consensus 276 ~~~~Ai~~~~~Al~l~P~~~ 295 (498)
..|.++|-+|++..|++.
T Consensus 264 --ssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 264 --SSALEYFLQALRKAPQHA 281 (493)
T ss_pred --hHHHHHHHHHHHhCcchh
Confidence 999999999999999854
No 428
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.77 E-value=52 Score=36.57 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=78.9
Q ss_pred HhhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHH-----
Q 010864 135 SRQRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDA----- 208 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a----- 208 (498)
.+.|+-++|+...-.+++.+ |-.++.+..-|.+|..+=- .+.+.+.+..+.|+++|++|.+..|.....
T Consensus 254 Nr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~-----~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~at 328 (1226)
T KOG4279|consen 254 NRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFI-----ASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLAT 328 (1226)
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhh-----ccCCcchhhHHHHHHHHHHHhccCchhhccccHHH
Confidence 35688999999888888876 4456778888888865422 223455667999999999999998874311
Q ss_pred --------------HHHHHHHHHHHHHHcCCHHHHHHHH---------------HHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010864 209 --------------FYNWAIAISDRAKMRGRTKEAEELW---------------KQATKNYEKAVQLNWNSPQALNNWGL 259 (498)
Q Consensus 209 --------------~~~lg~~~~~~~~~~g~~~eA~~~~---------------~~Al~~~~~Al~l~P~~~~a~~~lg~ 259 (498)
+..+|..+..+.-+.|..+.-.++| .+|+..-++.+++.|-......-++.
T Consensus 329 LL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 329 LLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 1223333333333366666655555 46777777777887765544444444
Q ss_pred HH
Q 010864 260 AL 261 (498)
Q Consensus 260 ~l 261 (498)
++
T Consensus 409 i~ 410 (1226)
T KOG4279|consen 409 IL 410 (1226)
T ss_pred HH
Confidence 43
No 429
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=63.46 E-value=2.2e+02 Score=30.63 Aligned_cols=189 Identities=11% Similarity=-0.018 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 010864 143 AAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKM 222 (498)
Q Consensus 143 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~ 222 (498)
-...+.+.+.+. .+-.+++.++.+|.+.+ -++=....++.++.+=++...-..|+..|.
T Consensus 85 veh~c~~~l~~~-e~kmal~el~q~y~en~---------------n~~l~~lWer~ve~dfnDvv~~ReLa~~yE----- 143 (711)
T COG1747 85 VEHLCTRVLEYG-ESKMALLELLQCYKENG---------------NEQLYSLWERLVEYDFNDVVIGRELADKYE----- 143 (711)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHhcC---------------chhhHHHHHHHHHhcchhHHHHHHHHHHHH-----
Confidence 344566666654 55688999999999885 466677788888888888777777777665
Q ss_pred cCCHHHHHHHHHHHHH-------------HHHHHHhcCCCCHHHHHHHH-HHHHHhcCcc---------hHHhhhhhHHH
Q 010864 223 RGRTKEAEELWKQATK-------------NYEKAVQLNWNSPQALNNWG-LALQELSAIV---------PAREKQTIVRT 279 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~-------------~~~~Al~l~P~~~~a~~~lg-~~l~~~g~~~---------~a~~~~~~~~~ 279 (498)
.++-..+...|.+|+. .+++..++-+++.+-...+- .+...+|.-. .-|....|+++
T Consensus 144 kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 144 KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 4666777766665542 44455555555544333222 2222222210 01556788999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcch--hHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 010864 280 AISKFRAAIQLQFDFHRAIYNLGTVLYGLAE--DTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSA 353 (498)
Q Consensus 280 Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~ 353 (498)
|+......++++-.+..+.-++-.-+...-+ .........+... +....+..+..-|++.+.++..+-+|++.
T Consensus 224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~-~~~rnf~~~l~dFek~m~f~eGnFVfHqt 298 (711)
T COG1747 224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNIS-QSGRNFFEALNDFEKLMHFDEGNFVFHQT 298 (711)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchh-hccccHHHHHHHHHHHheeccCceEEecc
Confidence 9999999999999988887777655544211 1111111000000 11123667777788888888777766654
No 430
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.09 E-value=39 Score=36.85 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=29.4
Q ss_pred CCCC-HHHHHHHHHHHHHhcCcchH---HhhhhhHHHHHHHHHHH
Q 010864 247 NWNS-PQALNNWGLALQELSAIVPA---REKQTIVRTAISKFRAA 287 (498)
Q Consensus 247 ~P~~-~~a~~~lg~~l~~~g~~~~a---~~~~~~~~~Ai~~~~~A 287 (498)
.|.. ...++-.|..+.+..++++| +.+.|+-++|...+++.
T Consensus 799 hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 799 HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred CccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4543 45788889999999998665 56677777777777664
No 431
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.97 E-value=1.2e+02 Score=29.93 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 010864 141 TFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRA 220 (498)
Q Consensus 141 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~ 220 (498)
..|++.-...+..+|..-..|+.+=.+..... ..+.+....++.=...+..+++-+|++...|...-.++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~------~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~-- 120 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQ------MVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLEL-- 120 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhh------hhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHh--
Confidence 34666667777778887777777666665511 1222344457778888999999999999999887777654
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---hcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHH
Q 010864 221 KMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQE---LSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRA 297 (498)
Q Consensus 221 ~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~---~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a 297 (498)
.-... |..-+..-++.+..|+.|--.|+..-.++.. .+++ .+++.-.++-..+|..++.+..+
T Consensus 121 --~p~~~-----~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~-------S~~k~e~eytt~~I~tdi~N~Sa 186 (328)
T COG5536 121 --FPKPS-----WGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNF-------SDLKHELEYTTSLIETDIYNNSA 186 (328)
T ss_pred --CCCcc-----cchhHHHHHHHhcccccccceeeeEeeeeecchhhccc-------hhHHHHHHhHHHHHhhCCCChHH
Confidence 31111 4444467889999999998888877766622 1222 12255566667778889999999
Q ss_pred HHHHHH---HHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 010864 298 IYNLGT---VLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRL 356 (498)
Q Consensus 298 ~~~Lg~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~ 356 (498)
|.+.-. ..++.|+ ......+.+-+.++..+.-.+|++.....-++.
T Consensus 187 W~~r~~~~~~~~~~~~-------------visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 187 WHHRYIWIERRFNRGD-------------VISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred HHHHHHHHHHHHhhcc-------------cchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 988733 3333333 111123667777888888889988744433333
No 432
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.23 E-value=66 Score=33.22 Aligned_cols=101 Identities=18% Similarity=0.105 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL---HDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~---~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
-.++..+|.-|..-|+ ++.|++.|.++-..+.+. ...+.|+-.+-.. +|+|..-...-.
T Consensus 150 Rra~~Dl~dhy~~cG~--------------l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~----~~nw~hv~sy~~ 211 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQ--------------LDNALRCYSRARDYCTSAKHVINMCLNLILVSIY----MGNWGHVLSYIS 211 (466)
T ss_pred HHHHHHHHHHHHHhcc--------------HHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHh----hcchhhhhhHHH
Confidence 3578899999999999 999999999977766542 3456666666666 777777665444
Q ss_pred HHHHH----HHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 235 QATKN----YEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 235 ~Al~~----~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
+|... -..+-+. | +.+...-|.+...+++| +.|..+|-.+.-
T Consensus 212 ~A~st~~~~~~~~q~v-~--~kl~C~agLa~L~lkky----------k~aa~~fL~~~~ 257 (466)
T KOG0686|consen 212 KAESTPDANENLAQEV-P--AKLKCAAGLANLLLKKY----------KSAAKYFLLAEF 257 (466)
T ss_pred HHHhCchhhhhHHHhc-C--cchHHHHHHHHHHHHHH----------HHHHHHHHhCCC
Confidence 44443 1111122 2 33455556666667788 889888876653
No 433
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=62.01 E-value=1.5e+02 Score=29.10 Aligned_cols=73 Identities=14% Similarity=-0.035 Sum_probs=56.3
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchH------------HhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPA------------REKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVL 305 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a------------~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~ 305 (498)
...+.=++-.|++..++..+|..+...+=--+. ..-..-.+.|..++.+|++++|+...++..+-.+-
T Consensus 64 ~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s 143 (277)
T PF13226_consen 64 AVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINIS 143 (277)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 555666788999999999999887765321111 12245678999999999999999999999988888
Q ss_pred HHcch
Q 010864 306 YGLAE 310 (498)
Q Consensus 306 ~~~g~ 310 (498)
...|+
T Consensus 144 ~~fge 148 (277)
T PF13226_consen 144 AYFGE 148 (277)
T ss_pred hhcCC
Confidence 88876
No 434
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.74 E-value=1e+02 Score=33.51 Aligned_cols=119 Identities=12% Similarity=-0.014 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 010864 140 LTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDR 219 (498)
Q Consensus 140 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~ 219 (498)
|-+...+.++||++.++. +-.+ .+..++|+ ++.|.+...+ .++..-|..||.+...
T Consensus 623 Fle~~g~~e~AL~~s~D~-d~rF---elal~lgr--------------l~iA~~la~e-----~~s~~Kw~~Lg~~al~- 678 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDP-DQRF---ELALKLGR--------------LDIAFDLAVE-----ANSEVKWRQLGDAALS- 678 (794)
T ss_pred HhhhccchHhhhhcCCCh-hhhh---hhhhhcCc--------------HHHHHHHHHh-----hcchHHHHHHHHHHhh-
Confidence 334445556666665543 2222 22345566 7776554433 3667789999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCcchH---HhhhhhHHHHHHHHHH
Q 010864 220 AKMRGRTKEAEELWKQATKNYEKAVQL--NWNSPQALNNWGLALQELSAIVPA---REKQTIVRTAISKFRA 286 (498)
Q Consensus 220 ~~~~g~~~eA~~~~~~Al~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~~a---~~~~~~~~~Ai~~~~~ 286 (498)
.|++..|.+++.+|...- -.+-+ .-++.+.+.-+|....+.|+.+-| +-..|++++..+.+..
T Consensus 679 ---~~~l~lA~EC~~~a~d~~-~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 679 ---AGELPLASECFLRARDLG-SLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ---cccchhHHHHHHhhcchh-hhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 999999997665554221 11211 234666666666666666666433 2334444555554443
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.94 E-value=1.3e+02 Score=31.11 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=39.4
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCH--HHHHHH--HHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDY--DALYNW--ALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~l--g~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
.+..++|..|...|...+..-|... ..+..+ |.-+|..-+ +++|.+.+++.+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd--------------~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFD--------------HKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHH
Confidence 4678999999999999988533333 345555 444566666 99999999988765
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.17 E-value=34 Score=35.55 Aligned_cols=66 Identities=17% Similarity=0.074 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHHHHHcCCHHHHH
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC---------PTLHDAFYNWAIAISDRAKMRGRTKEAE 230 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~---------p~~~~a~~~lg~~~~~~~~~~g~~~eA~ 230 (498)
+...|..++.-+|+ |..|++..+-. .++ +-+...+|..|-+|.- ++||.+|+
T Consensus 124 SligLlRvh~LLGD--------------Y~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylM----lrRY~DAi 184 (404)
T PF10255_consen 124 SLIGLLRVHCLLGD--------------YYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLM----LRRYADAI 184 (404)
T ss_pred HHHHHHHHHHhccC--------------HHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHH----HHHHHHHH
Confidence 34566778888999 99998886542 121 2245688999999999 99999999
Q ss_pred HHHHHHHHHHHHHH
Q 010864 231 ELWKQATKNYEKAV 244 (498)
Q Consensus 231 ~~~~~Al~~~~~Al 244 (498)
..|...+.+..+.-
T Consensus 185 r~f~~iL~yi~r~k 198 (404)
T PF10255_consen 185 RTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHHHhh
Confidence 88777776666554
No 437
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.70 E-value=67 Score=31.51 Aligned_cols=148 Identities=9% Similarity=-0.040 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864 139 ILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (498)
Q Consensus 139 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~ 218 (498)
-++.=+.....++.-+|.+...|..+-.++..--. ..+..=....++.+..++.|..+|...-.++..
T Consensus 89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~------------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ 156 (328)
T COG5536 89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPK------------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT 156 (328)
T ss_pred hhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCC------------cccchhHHHHHHHhcccccccceeeeEeeeeec
Confidence 34556677889999999999999998877765421 016777778899999999988877554444311
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH---HHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCH
Q 010864 219 RAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNW---GLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFH 295 (498)
Q Consensus 219 ~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~l---g~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~ 295 (498)
-...+++... .+.+++-..++..|+.|..||.+. -....+.|++ -.+..+++-+++.-.++-.+|++.
T Consensus 157 -ie~~~N~S~~----k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v----isqk~l~~eL~~i~~~if~~p~~~ 227 (328)
T COG5536 157 -IEDLFNFSDL----KHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV----ISQKYLEKELEYIFDKIFTDPDNQ 227 (328)
T ss_pred -chhhccchhH----HHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc----chHHHHHHHHHHHHhhhhcCcccc
Confidence 0002333322 233456677889999999999988 3334445555 222246777788888888899998
Q ss_pred HHHHHHHHHHHH
Q 010864 296 RAIYNLGTVLYG 307 (498)
Q Consensus 296 ~a~~~Lg~~~~~ 307 (498)
.+|.-+-.+...
T Consensus 228 S~w~y~r~~~~~ 239 (328)
T COG5536 228 SVWGYLRGVSSE 239 (328)
T ss_pred chhhHHHHHhcc
Confidence 888776555443
No 438
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.46 E-value=57 Score=34.83 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC-cchHHhhhhhHHHHHHHHH
Q 010864 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN-WNSPQALNNWGLALQELSA-IVPAREKQTIVRTAISKFR 285 (498)
Q Consensus 208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~-~~~a~~~~~~~~~Ai~~~~ 285 (498)
-+..+|.++.. +|+-..|..+|.-++..+. ....+ .-.+.+++-+|.+|+.+|. . .++..++.
T Consensus 451 k~lL~g~~lR~----Lg~~~~a~~~f~i~~~~e~-~~~~d~w~~PfA~YElA~l~~~~~g~~----------~e~~~~L~ 515 (546)
T KOG3783|consen 451 KYLLKGVILRN----LGDSEVAPKCFKIQVEKES-KRTEDLWAVPFALYELALLYWDLGGGL----------KEARALLL 515 (546)
T ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHhcccCh----------HHHHHHHH
Confidence 35677999999 9999999976666655522 22223 3468999999999999998 7 99999999
Q ss_pred HHHHhcCCC
Q 010864 286 AAIQLQFDF 294 (498)
Q Consensus 286 ~Al~l~P~~ 294 (498)
+|-....++
T Consensus 516 kAr~~~~dY 524 (546)
T KOG3783|consen 516 KAREYASDY 524 (546)
T ss_pred HHHhhcccc
Confidence 998876554
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=56.57 E-value=16 Score=37.83 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=40.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 220 AKMRGRTKEAEELWKQATKNYEKAV-QLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 220 ~~~~g~~~eA~~~~~~Al~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
+..+|+|..|++..+.---.-...+ ..-+-+..+++.+|.+|..+++| .+|+..|...+-
T Consensus 132 h~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY----------~DAir~f~~iL~ 192 (404)
T PF10255_consen 132 HCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRY----------ADAIRTFSQILL 192 (404)
T ss_pred HHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3449999999953321100000011 11234678899999999999999 999999998874
No 440
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=55.74 E-value=8.7 Score=40.82 Aligned_cols=53 Identities=28% Similarity=0.497 Sum_probs=43.6
Q ss_pred cccCCcccccccccCC-CCCC---CCeeeEeecCCceeeeecC------------hhhhhhHHHHHHHHH
Q 010864 428 RIEVPDIVSVSACADL-TLPP---GAGLCIETIHGPVFLVADS------------WEALDGWLDAIRLVY 481 (498)
Q Consensus 428 ~~~~~~~~~~~~~~~~-~~p~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~a~~~~~ 481 (498)
-|||..|++++...+. .+|. .+.|.|+|.. .||+|..+ .+...+|-.||+...
T Consensus 455 eIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~-~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 455 EIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT-TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred eecHHHhheeeccCCcccCCCCCCCceEEEEeee-EEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 7999999999999886 5564 4669999876 79999998 556889999998653
No 441
>PF12854 PPR_1: PPR repeat
Probab=55.04 E-value=23 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHH
Q 010864 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRA 286 (498)
Q Consensus 250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~ 286 (498)
+..+|+.|-..|.+.|+. ++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~----------~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRV----------DEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCH----------HHHHHHHHh
Confidence 567899999999999999 999999875
No 442
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=54.73 E-value=51 Score=28.90 Aligned_cols=58 Identities=16% Similarity=0.136 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcc-----hhhHHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 010864 116 NNAAMELINSVTGVD-----EEGRSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESAD 173 (498)
Q Consensus 116 ~~~A~~~~~~~~~~~-----~~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~ 173 (498)
.+.|.++..-+++.+ .......|++.-|..+.+.++..+|++.++...++.+|.++|.
T Consensus 57 ~~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 344444444443333 2234568999999999999999999999999999999999986
No 443
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.32 E-value=79 Score=34.37 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
+|-+.....++||.+.++.-. .+ .+..+ .|+++.|.+ +..+.++..-|..||.+....|+
T Consensus 622 ~Fle~~g~~e~AL~~s~D~d~-rF---elal~----lgrl~iA~~------------la~e~~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 622 HFLESQGMKEQALELSTDPDQ-RF---ELALK----LGRLDIAFD------------LAVEANSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hHhhhccchHhhhhcCCChhh-hh---hhhhh----cCcHHHHHH------------HHHhhcchHHHHHHHHHHhhccc
Confidence 444455556667777665321 11 22234 777777662 22234678889999999999999
Q ss_pred cchHHhhhhhHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcch
Q 010864 267 IVPAREKQTIVRTAISKFRAAIQL--------QFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 267 ~~~a~~~~~~~~~Ai~~~~~Al~l--------~P~~~~a~~~Lg~~~~~~g~ 310 (498)
+ ..|.++|.+|..+ ..++...+.-||......|+
T Consensus 682 l----------~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 682 L----------PLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred c----------hhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 9 9999999998654 24455556666666666555
No 444
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.00 E-value=61 Score=36.06 Aligned_cols=81 Identities=14% Similarity=-0.003 Sum_probs=58.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010864 184 KDALLEEACKKYDEATRLCPT-LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQ 262 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~p~-~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~ 262 (498)
..|+-++|+...-.+++.+-. .++.|..-|.+|.++ +...+|..|. ....|++.|++|++..|. ...=.|++.++.
T Consensus 255 r~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDm-F~~S~ytDa~-s~~~a~~WyrkaFeveP~-~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 255 RPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDM-FIASNYTDAE-SLNHAIEWYRKAFEVEPL-EYSGINLATLLR 331 (1226)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhh-hhccCCcchh-hHHHHHHHHHHHhccCch-hhccccHHHHHH
Confidence 356789999999998887544 556777778888762 2234555544 456778999999999995 445567888888
Q ss_pred HhcCc
Q 010864 263 ELSAI 267 (498)
Q Consensus 263 ~~g~~ 267 (498)
..|+.
T Consensus 332 aaG~~ 336 (1226)
T KOG4279|consen 332 AAGEH 336 (1226)
T ss_pred Hhhhh
Confidence 88875
No 445
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=53.68 E-value=94 Score=29.67 Aligned_cols=99 Identities=14% Similarity=0.038 Sum_probs=53.0
Q ss_pred HhhccHHHHHHHHHHHHHhC---CCC---------HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhC
Q 010864 135 SRQRILTFAAKRYANAIERN---PED---------YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLC 202 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~---P~~---------~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~ 202 (498)
+..|+|+.|++...-||+.+ |+. ++-....+......|....+ .+.........-.. -
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~---------~~~~~~~~l~~~~d-m 163 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP---------YFLRVFLDLTTEWD-M 163 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh---------HHHHHHHHHHhcCC-C
Confidence 45699999999999999987 432 23344555555555551110 01111111111111 1
Q ss_pred CC--CHHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHHHhcCCCC
Q 010864 203 PT--LHDAFYNWAIAISDRA-----KMRGRTKEAEELWKQATKNYEKAVQLNWNS 250 (498)
Q Consensus 203 p~--~~~a~~~lg~~~~~~~-----~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~ 250 (498)
|+ .+..|...|..+.... ...++...|+ .++++|+++||+.
T Consensus 164 pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al-------~~L~rA~~l~~k~ 211 (230)
T PHA02537 164 PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLAL-------ALLQRAFQLNDKC 211 (230)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHH-------HHHHHHHHhCCCC
Confidence 22 3455667777663200 0033444455 8999999999864
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.12 E-value=1.4e+02 Score=31.05 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCc
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAI 267 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 267 (498)
.++..+|.-|.. .|+++.|+..|.++..++..+-. ....+.|+-.+-..+|+|
T Consensus 151 ra~~Dl~dhy~~----cG~l~~Alr~YsR~RdYCTs~kh----vInm~ln~i~VSI~~~nw 203 (466)
T KOG0686|consen 151 RALEDLGDHYLD----CGQLDNALRCYSRARDYCTSAKH----VINMCLNLILVSIYMGNW 203 (466)
T ss_pred HHHHHHHHHHHH----hccHHHHHhhhhhhhhhhcchHH----HHHHHHHHHHHHHhhcch
Confidence 577888888988 99999999877776665554432 356777888888888888
No 447
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=76 Score=31.59 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQ 252 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~ 252 (498)
.+++||....+|+..+- .++|.+|..+|+.|+.+|..+++...++..
T Consensus 6 ~l~kaI~lv~kA~~eD~-------------------a~nY~eA~~lY~~aleYF~~~lKYE~~~~k 52 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDN-------------------AKNYEEALRLYQNALEYFLHALKYEANNKK 52 (439)
T ss_pred HHHHHHHHHHHHhhhcc-------------------hhchHHHHHHHHHHHHHHHHHHHhhhcChh
Confidence 37889998888876552 789999999999999999999987755543
No 448
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.94 E-value=3e+02 Score=29.06 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcch
Q 010864 248 WNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAE 310 (498)
Q Consensus 248 P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~ 310 (498)
-++...|..||......|++ +-|..+|.++-. +..|..+|...|+
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~----------~lAe~c~~k~~d--------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNI----------ELAEECYQKAKD--------FSGLLLLYSSTGD 388 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBH----------HHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCH----------HHHHHHHHhhcC--------ccccHHHHHHhCC
Confidence 45788999999999999999 999999988632 3345555555554
No 449
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.38 E-value=63 Score=22.13 Aligned_cols=41 Identities=7% Similarity=0.060 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 010864 298 IYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVR 358 (498)
Q Consensus 298 ~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~~~~~l~~~~ 358 (498)
.++|+.+|..+|+ ++.|...++..+. .++...-..+..++.
T Consensus 2 kLdLA~ayie~Gd-------------------~e~Ar~lL~evl~-~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 2 KLDLARAYIEMGD-------------------LEGARELLEEVIE-EGDEAQRQEARALLA 42 (44)
T ss_pred chHHHHHHHHcCC-------------------hHHHHHHHHHHHH-cCCHHHHHHHHHHHh
Confidence 3689999999999 8889988888884 566665555554443
No 450
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.01 E-value=24 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH
Q 010864 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ 289 (498)
Q Consensus 254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~ 289 (498)
.++|+.+|.++|++ +.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~----------e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDL----------EGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence 46899999999999 999999999994
No 451
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.69 E-value=20 Score=40.44 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=24.2
Q ss_pred eeeeecChhhhhhHHHHHHHHHHHHhh
Q 010864 460 VFLVADSWEALDGWLDAIRLVYTIYAR 486 (498)
Q Consensus 460 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 486 (498)
|+|-||+-+.++-|+-+|--+.++.+-
T Consensus 1085 v~LaADTkeel~~Wls~iN~tL~~LRs 1111 (1116)
T KOG3640|consen 1085 VMLAADTKEELQSWLSAINDTLKQLRS 1111 (1116)
T ss_pred eeeecccHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999988887654
No 452
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=51.14 E-value=2.8e+02 Score=28.14 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=86.4
Q ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 010864 137 QRILTFAAKRYANAIERN-PEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIA 215 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~ 215 (498)
.+-.+++.....+++... |.-......++.++..... ....++..=...|+....+.|+- .+-.|.+.+
T Consensus 269 r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~---------aedtDW~~I~aLYdaL~~~apSP-vV~LNRAVA 338 (415)
T COG4941 269 RALIDEGLALLDRALASRRPGPYQLQAAIAALHARARR---------AEDTDWPAIDALYDALEQAAPSP-VVTLNRAVA 338 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcc---------cCCCChHHHHHHHHHHHHhCCCC-eEeehHHHH
Confidence 345667777777777654 4433344444445444332 11123666666676666666653 445666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcC
Q 010864 216 ISDRAKMRGRTKEAEELWKQATKNYEKAVQLNW---NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQF 292 (498)
Q Consensus 216 ~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P---~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P 292 (498)
... ..-...++ ...+ ++.-+| .+...+.-.|..+.++|+. ++|...|++|+.+.+
T Consensus 339 la~----~~Gp~agL-------a~ve-~L~~~~~L~gy~~~h~~RadlL~rLgr~----------~eAr~aydrAi~La~ 396 (415)
T COG4941 339 LAM----REGPAAGL-------AMVE-ALLARPRLDGYHLYHAARADLLARLGRV----------EEARAAYDRAIALAR 396 (415)
T ss_pred HHH----hhhHHhHH-------HHHH-HhhcccccccccccHHHHHHHHHHhCCh----------HHHHHHHHHHHHhcC
Confidence 766 54455555 3333 444443 4667788899999999999 999999999999999
Q ss_pred CCHHHHHHHHH
Q 010864 293 DFHRAIYNLGT 303 (498)
Q Consensus 293 ~~~~a~~~Lg~ 303 (498)
+..+..+-+..
T Consensus 397 ~~aer~~l~~r 407 (415)
T COG4941 397 NAAERAFLRQR 407 (415)
T ss_pred ChHHHHHHHHH
Confidence 88776655443
No 453
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.03 E-value=2e+02 Score=31.65 Aligned_cols=109 Identities=14% Similarity=0.011 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh---cCCCC----------------HHHHHHHHHHHHHhcCcc
Q 010864 208 AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ---LNWNS----------------PQALNNWGLALQELSAIV 268 (498)
Q Consensus 208 a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~---l~P~~----------------~~a~~~lg~~l~~~g~~~ 268 (498)
+|.--|..... .+..+.|.+.|++|++..++.+. ..+.. ...+...+.+..-++++
T Consensus 303 ~y~lS~l~~~~----~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~- 377 (608)
T PF10345_consen 303 VYFLSGLHNLY----KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW- 377 (608)
T ss_pred HHHHHHHHHhh----ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH-
Confidence 34444556666 78888999999999999998881 11111 12245556666667777
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhc---CC------CHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHHHHHHHHH-
Q 010864 269 PAREKQTIVRTAISKFRAAIQLQ---FD------FHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYSQSAIYIA- 338 (498)
Q Consensus 269 ~a~~~~~~~~~Ai~~~~~Al~l~---P~------~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~- 338 (498)
..|....+.+.... |. .+.+++-.|..+...|+ .+.|..+|.
T Consensus 378 ---------~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~-------------------l~~A~~~y~~ 429 (608)
T PF10345_consen 378 ---------SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGD-------------------LEAALYQYQK 429 (608)
T ss_pred ---------HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCC-------------------HHHHHHHHhh
Confidence 88888887777652 22 36788889999999998 888999987
Q ss_pred -------HHHhcCCCHHH
Q 010864 339 -------AAHALKPSYSV 349 (498)
Q Consensus 339 -------~Al~l~p~~~~ 349 (498)
.+....+.+..
T Consensus 430 ~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 430 PRFLLCEAANRKSKFREL 447 (608)
T ss_pred hHHhhhhhhccCCcchHH
Confidence 66666777663
No 454
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.03 E-value=2.9e+02 Score=28.04 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=57.6
Q ss_pred HHHHHHHHHhCCCCHH-HHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc----------------------
Q 010864 192 CKKYDEATRLCPTLHD-AFY--NWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQL---------------------- 246 (498)
Q Consensus 192 ~~~~~~Al~l~p~~~~-a~~--~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l---------------------- 246 (498)
-..|++++++-|++.. .+. +-|.++.. .++|.+...-++.|-..|.+-...
T Consensus 41 ~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~----~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~ 116 (449)
T COG3014 41 KKAYEQSKQFTKKKKNALLWDLQNGLSALY----ARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRA 116 (449)
T ss_pred hhHHHHHHHhhhhhhHHHHHhhhhhHHHHH----hhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhh
Confidence 4567777777776543 333 44777777 888888887776665555543322
Q ss_pred -CCCC---HHHHHHHHHHHHHhcCcchHH----hhhhhHHHHHHHHHHHHHh
Q 010864 247 -NWNS---PQALNNWGLALQELSAIVPAR----EKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 247 -~P~~---~~a~~~lg~~l~~~g~~~~a~----~~~~~~~~Ai~~~~~Al~l 290 (498)
+|.. .-....+|.-|.+..+++.|. +....-+.|.+.|.++++.
T Consensus 117 Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AKe~~~~ei~k 168 (449)
T COG3014 117 YGGNIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAKEFYYEEVQK 168 (449)
T ss_pred cCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221 234567777788888887662 2233345666677666653
No 455
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.88 E-value=34 Score=25.58 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh
Q 010864 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (498)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 153 (498)
+.|..+..++... -..|++++|+.+|.+++..
T Consensus 3 ~~A~~~~~~Av~~-----D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEA-----DEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHH-----HHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHH
Confidence 4566777777665 3467888888888887653
No 456
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=49.82 E-value=1.3e+02 Score=33.48 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 010864 207 DAFYNWAIAISDRAKMRGRTKEAEELW 233 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~g~~~eA~~~~ 233 (498)
.++.++|..+.+ +..+++|.++|
T Consensus 797 ~A~r~ig~~fa~----~~~We~A~~yY 819 (1189)
T KOG2041|consen 797 DAFRNIGETFAE----MMEWEEAAKYY 819 (1189)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 456666666666 55555555433
No 457
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.74 E-value=1.8e+02 Score=34.19 Aligned_cols=64 Identities=19% Similarity=0.166 Sum_probs=34.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHH----hcCCCCHHHH---HHHHHHHHHhcCcchH----HhhhhhHHHHHHHHHHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAV----QLNWNSPQAL---NNWGLALQELSAIVPA----REKQTIVRTAISKFRAA 287 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al----~l~P~~~~a~---~~lg~~l~~~g~~~~a----~~~~~~~~~Ai~~~~~A 287 (498)
.|+.++|++.|+.+. ..++++ ++.+.-.+.. ..|..-+.+++++-+| .+-..+.++|+..|-+|
T Consensus 965 ~GklekAl~a~~~~~-dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka 1039 (1265)
T KOG1920|consen 965 CGKLEKALKAYKECG-DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKA 1039 (1265)
T ss_pred hccHHHHHHHHHHhc-cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhH
Confidence 677777776665543 223333 3344444444 6677777888888444 22344445555444433
No 458
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.53 E-value=42 Score=32.04 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=52.8
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-cC-CC
Q 010864 184 KDALLEEACKKYDEATRLCPTLHD------------AFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQ-LN-WN 249 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l~p~~~~------------a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~-l~-P~ 249 (498)
+.|+|+.|++....||+.+-..++ -...++..... .|+.-+.- |. ..+..... .+ |+
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~----ag~~~e~~--~~---~~~~~l~~~~dmpd 165 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAAS----AGESVEPY--FL---RVFLDLTTEWDMPD 165 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHH----cCCCCChH--HH---HHHHHHHhcCCCCh
Confidence 446699999999999998533222 22333333333 44422211 11 11222211 11 44
Q ss_pred C--HHHHHHHHHHHHHh--cCcchHHhhhhhHHHHHHHHHHHHHhcCCC
Q 010864 250 S--PQALNNWGLALQEL--SAIVPAREKQTIVRTAISKFRAAIQLQFDF 294 (498)
Q Consensus 250 ~--~~a~~~lg~~l~~~--g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~ 294 (498)
. +..+--.|..+.+. |+. -...+++..|+.++++|++++|+-
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~---~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEP---IGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCC---ccCcccHHHHHHHHHHHHHhCCCC
Confidence 3 34455556655321 111 122344589999999999999984
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.49 E-value=1.4e+02 Score=28.55 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010864 188 LEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLAL 261 (498)
Q Consensus 188 ~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l 261 (498)
-...++.+.+|+..... .......+|..|.. .|++++|++.|+.+...|++-- ...-...++..+-.|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~----~g~~~~A~~~l~~~~~~yr~eg-W~~l~~~~l~~l~~Ca 228 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFR----LGDYDKALKLLEPAASSYRREG-WWSLLTEVLWRLLECA 228 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHH
Confidence 44555666666554221 23455678888888 9999999988887776666310 0011356777888888
Q ss_pred HHhcCc
Q 010864 262 QELSAI 267 (498)
Q Consensus 262 ~~~g~~ 267 (498)
..+|+.
T Consensus 229 ~~~~~~ 234 (247)
T PF11817_consen 229 KRLGDV 234 (247)
T ss_pred HHhCCH
Confidence 888887
No 460
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.46 E-value=33 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh
Q 010864 116 NNAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (498)
Q Consensus 116 ~~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 153 (498)
.+.|+.++.+++.. -..|+|++|+.+|.++++.
T Consensus 3 l~kai~Lv~~A~~e-----D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDE-----DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHh-----hHhhhHHHHHHHHHHHHHH
Confidence 35677777777655 3468899999999999875
No 461
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=49.16 E-value=3.7e+02 Score=32.40 Aligned_cols=129 Identities=16% Similarity=0.066 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHcCCH-----
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT------LHDAFYNWAIAISDRAKMRGRT----- 226 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~------~~~a~~~lg~~~~~~~~~~g~~----- 226 (498)
......+|..+...|+ +.+|++.|..|+.+-.. .+.++-.++.+..-+.+....+
T Consensus 242 gR~~k~~gd~~LlaG~--------------~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i 307 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGR--------------WPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQI 307 (1185)
T ss_pred hhhhhhhhhHHHHcCC--------------HHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccch
Confidence 3456678888888898 99999999999988332 2345555555544332222111
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHHHHHh----cCCC--CHHH
Q 010864 227 -----------------------------------------------KEAEELWKQATKNYEKAVQ----LNWN--SPQA 253 (498)
Q Consensus 227 -----------------------------------------------~eA~~~~~~Al~~~~~Al~----l~P~--~~~a 253 (498)
..-.+.+++++.+|.++.. ..|. +.++
T Consensus 308 ~~~~~~~~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~ 387 (1185)
T PF08626_consen 308 CSPLCPISSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEA 387 (1185)
T ss_pred hcccCCCCCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHH
Confidence 1222457889999999872 2343 4566
Q ss_pred HHHHHHHHHHhc--------------------CcchHHhhhhhHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHH
Q 010864 254 LNNWGLALQELS--------------------AIVPAREKQTIVRTAISKFRAAIQLQFD------FHRAIYNLGTVLYG 307 (498)
Q Consensus 254 ~~~lg~~l~~~g--------------------~~~~a~~~~~~~~~Ai~~~~~Al~l~P~------~~~a~~~Lg~~~~~ 307 (498)
...++.++.... .- .++..+..+++.+... -..++..++.+|..
T Consensus 388 ~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~----------~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~ 457 (1185)
T PF08626_consen 388 CLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSR----------SEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGS 457 (1185)
T ss_pred HHHHHHHHHHhhcccchhhhhccccccccCCCCH----------HHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHh
Confidence 777777776666 44 7788888888876543 25678889999999
Q ss_pred cch
Q 010864 308 LAE 310 (498)
Q Consensus 308 ~g~ 310 (498)
+|-
T Consensus 458 lG~ 460 (1185)
T PF08626_consen 458 LGF 460 (1185)
T ss_pred cch
Confidence 984
No 462
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=48.88 E-value=1.6e+02 Score=30.18 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
..+++|+|.+|..++.... ......+++|+..|++|-.+
T Consensus 107 a~vL~N~aa~~s~~a~~~~-----~~~~~~~k~A~~~fq~AAg~ 145 (377)
T PF03097_consen 107 ACVLFNIAALYSQLAASQN-----RSTDEGLKEACNYFQRAAGI 145 (377)
T ss_dssp HHHHHHHHHHHHHHHHHS------TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cccchhHHHHHHHHHHHHHH
Confidence 4578888888888876321 12344577777777777654
No 463
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=48.47 E-value=3.4e+02 Score=28.31 Aligned_cols=150 Identities=17% Similarity=0.081 Sum_probs=81.6
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHH-------HHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHH----HhC
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALY-------NWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT----RLC 202 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~-------~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al----~l~ 202 (498)
.+..++|+-|...|+.+.+-.-++ .+|. ..|.+++..+........-......++.|+..|.++- ...
T Consensus 218 aFml~Dy~~A~s~Y~~~k~Df~~D-kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~ 296 (414)
T PF12739_consen 218 AFMLRDYELAYSTYRLLKKDFKND-KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLP 296 (414)
T ss_pred HHHHccHHHHHHHHHHHHHHHhhc-hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccccccc
Confidence 456899999999999887643322 3444 4444444444411100011233457888999998842 222
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH--HHhcC-------cchH
Q 010864 203 PTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWN---SPQALNNWGLAL--QELSA-------IVPA 270 (498)
Q Consensus 203 p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~---~~~a~~~lg~~l--~~~g~-------~~~a 270 (498)
..-..+....+.++.. .|.+.++...+-+... +.+.-+-. .+-.+-+.+.++ ..... ...+
T Consensus 297 ~~a~R~~ll~~ell~~----~~~~~~a~~~~~~~~~---~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~ 369 (414)
T PF12739_consen 297 YYALRCALLLAELLKS----RGGYWEAADQLIRWTS---EILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKY 369 (414)
T ss_pred cchHHHHHHHHHHHHh----cCccHHHHHHHHHHHH---HHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHH
Confidence 2333455566666666 8888887754333222 21111122 444555666666 33211 1111
Q ss_pred ----------HhhhhhHHHHHHHHHHHHHhc
Q 010864 271 ----------REKQTIVRTAISKFRAAIQLQ 291 (498)
Q Consensus 271 ----------~~~~~~~~~Ai~~~~~Al~l~ 291 (498)
+.+.|....|+.+|.+|+.+-
T Consensus 370 af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 370 AFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 345666688999998888763
No 464
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.68 E-value=2.3e+02 Score=26.07 Aligned_cols=125 Identities=10% Similarity=0.106 Sum_probs=78.4
Q ss_pred hhcHHHHHHHHHHhhhcc------------hhhHHhhccHHHHHHHHHHHHHhCC--CCH--HHHHHHHHHHHHhcCcCC
Q 010864 113 AEQNNAAMELINSVTGVD------------EEGRSRQRILTFAAKRYANAIERNP--EDY--DALYNWALVLQESADNVS 176 (498)
Q Consensus 113 ~~~~~~A~~~~~~~~~~~------------~~~~~~~g~~~~A~~~~~~al~~~P--~~~--~a~~~lg~~~~~~g~~~~ 176 (498)
.+..++|+..|..+-.-. ...+...|+-..|+..|..+-.-.| .-. .+...-+.++...|.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs--- 147 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS--- 147 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc---
Confidence 345566666665544333 2234567999999999998766543 221 234445666667777
Q ss_pred CCCCCCchhhhHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 010864 177 LDSTSPSKDALLEEACKKYDEA-TRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALN 255 (498)
Q Consensus 177 ~~~~~~~~~~~~~~A~~~~~~A-l~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~ 255 (498)
|++-..-.+.. ..-+|-...+.-.||.+-.+ .|++..|. +.|.+... |.+.+....
T Consensus 148 -----------y~dV~srvepLa~d~n~mR~sArEALglAa~k----agd~a~A~-------~~F~qia~-Da~aprnir 204 (221)
T COG4649 148 -----------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYK----AGDFAKAK-------SWFVQIAN-DAQAPRNIR 204 (221)
T ss_pred -----------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHh----ccchHHHH-------HHHHHHHc-cccCcHHHH
Confidence 77654433322 11255567788889999988 99999999 56665554 555566666
Q ss_pred HHHHHHHH
Q 010864 256 NWGLALQE 263 (498)
Q Consensus 256 ~lg~~l~~ 263 (498)
+.+.+...
T Consensus 205 qRAq~mld 212 (221)
T COG4649 205 QRAQIMLD 212 (221)
T ss_pred HHHHHHHH
Confidence 66665544
No 465
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.67 E-value=27 Score=33.83 Aligned_cols=101 Identities=23% Similarity=0.358 Sum_probs=54.5
Q ss_pred hhccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccCCcccccccccCCCCC
Q 010864 367 KAGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEVPDIVSVSACADLTLP 446 (498)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 446 (498)
++||+... .......|.++||+|...-+....--.. -.+...|||+. +|+.-+.|++-|
T Consensus 262 REGWLlKl----gg~rvktWKrRWFiLtdNCLYYFe~tTD----------------KEPrGIIpLeN-lsir~VedP~kP 320 (395)
T KOG0930|consen 262 REGWLLKL----GGNRVKTWKRRWFILTDNCLYYFEYTTD----------------KEPRGIIPLEN-LSIREVEDPKKP 320 (395)
T ss_pred ccceeeee----cCCcccchhheeEEeecceeeeeeeccC----------------CCCCcceeccc-cceeeccCCCCC
Confidence 46776643 1224568999999998866654332211 11233455553 234444443222
Q ss_pred ----------C----------CCeeeEeecCCceeee-ecChhhhhhHHHHHHHH------HHHHhhccc
Q 010864 447 ----------P----------GAGLCIETIHGPVFLV-ADSWEALDGWLDAIRLV------YTIYARGKA 489 (498)
Q Consensus 447 ----------~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~------~~~~~~~~~ 489 (498)
. ++|=.+. +.-.||=+ |-+.++.+.|..+|+-. |++.++-|+
T Consensus 321 ~cfEly~ps~~gq~IKACKTe~DGRvVE-G~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pfy~mla~rK~ 389 (395)
T KOG0930|consen 321 NCFELYIPSNKGQVIKACKTEADGRVVE-GNHSVYRISAPTPEEKDEWIKSIKAAISRDPFYEMLAARKK 389 (395)
T ss_pred CeEEEecCCCCcCeeeeecccCCceeEe-ccceEEEeeCCCHHHHHHHHHHHHHHhccCcHHHHHhcccc
Confidence 1 1122222 11124544 55999999999999854 556655554
No 466
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=46.56 E-value=19 Score=30.48 Aligned_cols=101 Identities=17% Similarity=0.261 Sum_probs=55.5
Q ss_pred hccccCCCCCCCCCCchhhhhhhhccchhhhhhhcccchhhccccccCCCCCCCCCCccccccC-------Ccccccc--
Q 010864 368 AGYLTAPPAGIPVAPHSDWKRSQFVLNHEGLQQASKNEQKQVTRSLSGRTGDFSPDRRAIRIEV-------PDIVSVS-- 438 (498)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-- 438 (498)
+|++..+.+.... ..|.+++.++..-++.-+...+.... .......+.+++ ..|.+.+
T Consensus 5 EGwvkvP~~~~~k---rGW~r~~vVv~~~Kl~lYd~e~~k~~----------~p~~~~~~vLdlrD~~fsV~~VtasDvi 71 (122)
T cd01243 5 EGHVKIPKPGGVK---KGWQRALVVVCDFKLFLYDIAEDRAS----------QPSVVISQVLDMRDPEFSVSSVLESDVI 71 (122)
T ss_pred eeeEeccCCCCcc---cCceEEEEEEeCCEEEEEeCCccccC----------CccCceeEEEEcCCCCEEEEEecHHHcc
Confidence 5666665433222 36999999998887776654443220 000111222233 2333333
Q ss_pred cccCCCCCCCCeeeEee--cCC-----ceeeeecChhhhhhHHHHHHHHHHH
Q 010864 439 ACADLTLPPGAGLCIET--IHG-----PVFLVADSWEALDGWLDAIRLVYTI 483 (498)
Q Consensus 439 ~~~~~~~p~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~ 483 (498)
....--+|. .|+|.+ +.+ .+||.|+|-.+-..|+.|+-=+..|
T Consensus 72 ~a~~kDiP~--If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~~ 121 (122)
T cd01243 72 HASKKDIPC--IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHKI 121 (122)
T ss_pred ccCcccCCe--EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHhh
Confidence 111123443 344443 223 2699999999999999998755544
No 467
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=46.38 E-value=74 Score=28.73 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh----cCCCHHHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAI 298 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l----~P~~~~a~ 298 (498)
.+.-..+.+.|++++..+.+...+.+++...+.++|..+-..... .+.++++-+++.++..++. ...+...|
T Consensus 79 ~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~----~Q~k~i~l~~~~L~~~~~~a~~~~~~~~Kly 154 (170)
T PF09548_consen 79 KNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDRE----MQEKHIELYLEQLEQQLEEAREEAKKKGKLY 154 (170)
T ss_pred cCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 334446667788888888888888999999999999987655442 4455556666555555443 45556677
Q ss_pred HHHHHH
Q 010864 299 YNLGTV 304 (498)
Q Consensus 299 ~~Lg~~ 304 (498)
..||.+
T Consensus 155 r~LGvl 160 (170)
T PF09548_consen 155 RSLGVL 160 (170)
T ss_pred HHHHHH
Confidence 777754
No 468
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.11 E-value=1.5e+02 Score=23.24 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHHHHcCCHHHHHH
Q 010864 161 LYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAI---AISDRAKMRGRTKEAEE 231 (498)
Q Consensus 161 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~---~~~~~~~~~g~~~eA~~ 231 (498)
....|.-++...+ .++|+..+.++|+..++....+..||. +|.+ .|+|.+.++
T Consensus 9 ~ie~GlkLY~~~~--------------~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e----~Gkyr~~L~ 64 (80)
T PF10579_consen 9 QIEKGLKLYHQNE--------------TQQALQKWRKALEKITDREDRFRVLGYLIQAHME----WGKYREMLA 64 (80)
T ss_pred HHHHHHHHhccch--------------HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3455666667777 999999999999998887776665554 5566 899888883
No 469
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=45.08 E-value=3.7e+02 Score=27.71 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHc---CC-------------HHHHHHHHHHHHHHHHHHHhc--CCC---------------CHHH
Q 010864 207 DAFYNWAIAISDRAKMR---GR-------------TKEAEELWKQATKNYEKAVQL--NWN---------------SPQA 253 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~---g~-------------~~eA~~~~~~Al~~~~~Al~l--~P~---------------~~~a 253 (498)
..|+.||.+|...+-.. .+ ..+.-.+-.+|+.+|+.-+.. .|+ ...+
T Consensus 223 ql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a 302 (371)
T PF12309_consen 223 QLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYA 302 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHH
Confidence 57888999988753211 11 011223456788888877754 332 2467
Q ss_pred HHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHH
Q 010864 254 LNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHR 296 (498)
Q Consensus 254 ~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~ 296 (498)
++++|.+|.+.=. .....+.+++..++.+|+..+..--.++.
T Consensus 303 ~f~~arl~~K~~~-~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 303 YFHIARLYSKLIT-SDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHccccC-CChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 8888888887711 12256788899999999999886444443
No 470
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.92 E-value=2.9e+02 Score=26.42 Aligned_cols=59 Identities=19% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCH
Q 010864 134 RSRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLH 206 (498)
Q Consensus 134 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~ 206 (498)
+.+.+.+.+|+...+.-++.+|.+......+=.+|.-.|+ +++|..-++-+-++.|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGd--------------w~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGD--------------WEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcch--------------HHHHHHHHHHHhhcCcccc
Confidence 3456777888888888888888888777777777888888 8888888888888888753
No 471
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=44.89 E-value=3.4e+02 Score=27.29 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 200 (498)
..+++|+|.+|..++....... .....+.|+..|++|-.
T Consensus 111 ~~vLfn~aa~~s~~a~~~~~~~----~~~~~k~A~~~fq~AAG 149 (345)
T cd09034 111 LSILFNLAALASQLANEKLITG----SEEDLKQAIKSLQKAAG 149 (345)
T ss_pred HHHHHHHHHHHHHHHHhccCCC----chHHHHHHHHHHHHHHH
Confidence 5678899999988876322211 13446667777666654
No 472
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=44.87 E-value=73 Score=27.91 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 010864 156 EDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISD 218 (498)
Q Consensus 156 ~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~ 218 (498)
.-.+.....+...+..|+ +.-|++..+.++..+|++..+...++.+|..
T Consensus 68 GG~d~vl~~A~~~~~~gd--------------~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGD--------------YQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp TCHHHHHHHHHHHHHCT---------------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC--------------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 456778888888899999 9999999999999999999999999999988
No 473
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=44.07 E-value=2.1e+02 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
..+++|+|.+|.+++.... ......+++|+.+|++|-.+
T Consensus 106 a~VLfNigal~sq~a~~~~-----~~~~~glK~A~~~fq~AAG~ 144 (355)
T cd09241 106 ANILYNLGALYSQLALSEN-----RYTDEGLKRACSYFQASAGC 144 (355)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHHHH
Confidence 3478888888888775211 11223467777777776553
No 474
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.79 E-value=88 Score=28.60 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 236 ATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 236 Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
.+...++.++..| ++..+.+++.++...|+. ++|....+++..+-|.
T Consensus 130 ~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~----------~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 130 YIEWAERLLRRRP-DPNVYQRYALALALLGDP----------EEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCc
Confidence 3356677788888 789999999999999999 9999999999999993
No 475
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.78 E-value=64 Score=33.00 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=50.6
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAIS 217 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~ 217 (498)
..+-+|+.+++.++..+|.+......+-.+|..+|- ...|...|... .+ ++ --+-.||....
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~--------------~~~A~~~~~~L-~i--K~-IQ~DTL~h~~~ 258 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGA--------------GSLALEHYESL-DI--KN-IQLDTLGHLIL 258 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHhc-Ch--HH-HHHHHhHHHHH
Confidence 445667777777777777777777777777777777 77777777432 11 10 01122233333
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHHH
Q 010864 218 DRAKMRGRTKEAE-ELWKQATKNYEKAV 244 (498)
Q Consensus 218 ~~~~~~g~~~eA~-~~~~~Al~~~~~Al 244 (498)
.+.-..|.+..+. ..++.+...|....
T Consensus 259 ~r~~~~~~~~~~~~~~~~~~~~fy~~~~ 286 (365)
T PF09797_consen 259 DRLSTLGPFKSAPENLLENALKFYDNSE 286 (365)
T ss_pred HHHhccCcccccchHHHHHHHHHHHHHH
Confidence 3222255555555 55555666665544
No 476
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=43.14 E-value=1.6e+02 Score=25.77 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
+.++.....+..++..+.-+|.+|.++|.. .+|-+.+++|-+.
T Consensus 107 ki~~~l~kn~~~~p~~L~kia~Ay~klg~~----------r~~~ell~~ACek 149 (161)
T PF09205_consen 107 KIYNELKKNEEINPEFLVKIANAYKKLGNT----------REANELLKEACEK 149 (161)
T ss_dssp HHHHHH-----S-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHT
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhcch----------hhHHHHHHHHHHh
Confidence 566666655566899999999999999999 9999999888653
No 477
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.07 E-value=90 Score=28.53 Aligned_cols=52 Identities=29% Similarity=0.340 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCC
Q 010864 138 RILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPT 204 (498)
Q Consensus 138 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~ 204 (498)
+..+..++..++.+...| ++..+.+++.++...|+ .++|....+++..+.|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~--------------~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGD--------------PEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCc
Confidence 445667777888888888 67899999999999999 99999999999999993
No 478
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.57 E-value=4.2e+02 Score=27.66 Aligned_cols=124 Identities=14% Similarity=0.108 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHh----CCC-----CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--HHhcCCC-CHHHHH
Q 010864 188 LEEACKKYDEATRL----CPT-----LHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEK--AVQLNWN-SPQALN 255 (498)
Q Consensus 188 ~~~A~~~~~~Al~l----~p~-----~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~--Al~l~P~-~~~a~~ 255 (498)
|++|.++-+..+.- +.. .+..|+.+..+|.. .|+...-...+ ..+-+ .|..|-. .+...|
T Consensus 142 ~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~----~~~l~~~rs~l----~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 142 YKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYEL----EGRLADIRSFL----HALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHh----hcchHHHHHHH----HHHHHHhhhcCcchhHHHHHH
Confidence 88888877766543 111 24567777777776 78755544211 11111 1222222 234455
Q ss_pred HHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHHHH
Q 010864 256 NWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNELYS 331 (498)
Q Consensus 256 ~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l----~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 331 (498)
.|=..|...+.| +.|.....+..-- +.+.++-+|.+|.+..-+++ |.
T Consensus 214 ~LLr~yL~n~ly----------dqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-------------------Ys 264 (493)
T KOG2581|consen 214 LLLRNYLHNKLY----------DQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-------------------YS 264 (493)
T ss_pred HHHHHHhhhHHH----------HHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-------------------hh
Confidence 566677777887 8887777665421 11334556667777776666 99
Q ss_pred HHHHHHHHHHhcCCCHH
Q 010864 332 QSAIYIAAAHALKPSYS 348 (498)
Q Consensus 332 ~A~~~~~~Al~l~p~~~ 348 (498)
.|.+|+-+|+...|.+.
T Consensus 265 sA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 265 SALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhCcchh
Confidence 99999999999999855
No 479
>PF12854 PPR_1: PPR repeat
Probab=42.37 E-value=58 Score=20.59 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 010864 205 LHDAFYNWAIAISDRAKMRGRTKEAEELWK 234 (498)
Q Consensus 205 ~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~ 234 (498)
+...|..|-..|.+ .|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck----~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCK----AGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHH----CCCHHHHHHHHH
Confidence 45678888888999 999999996443
No 480
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=42.10 E-value=51 Score=27.27 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred cccccCCcccccccccCCCCCCCCeeeEeecCCceeeeecChhhhhhHHHHHHHHHHHHh
Q 010864 426 AIRIEVPDIVSVSACADLTLPPGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVYTIYA 485 (498)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 485 (498)
..-||+..-++++. -.+..|.|.|. +.+|...|....+..||++|.-|..-+.
T Consensus 51 KGeI~~~~~l~v~~------k~~~~F~I~tp-~RtY~l~d~~~~A~~W~~~I~~~~~~~~ 103 (104)
T PF14593_consen 51 KGEIPWSKELSVEV------KSFKTFFIHTP-KRTYYLEDPEGNAQQWVEAIEEVKKQYY 103 (104)
T ss_dssp EEEE--STT-EEEE------CSSSEEEEEET-TEEEEEE-TTS-HHHHHHHHHHHHHHHH
T ss_pred CcEEecCCceEEEE------ccCCEEEEECC-CcEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 44566664444433 24568889864 7788888888889999999998876553
No 481
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=41.94 E-value=99 Score=27.99 Aligned_cols=78 Identities=21% Similarity=0.234 Sum_probs=54.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHH----hcCCCHHHH
Q 010864 223 RGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQ----LQFDFHRAI 298 (498)
Q Consensus 223 ~g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~----l~P~~~~a~ 298 (498)
.+.-..+.+.|++++..+.+...+.+++...+.++|..+-..... .+.+.++-+++.++..++ ....+...|
T Consensus 80 ~~~g~s~~eaw~~~~~~~~~~~~L~~~d~eiL~~lg~~LG~~D~e----~Q~k~i~L~~e~L~~~~~~a~~~~~k~~Kmy 155 (171)
T PRK08307 80 SGEGETAYEAWEKALEENWKNTALKKEDIEILLQFGKTLGQSDRE----GQQKHIRLALEHLEREEEEAEEEQKKNEKMY 155 (171)
T ss_pred hCCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 344456667788888888888889999999999999887665542 455566666666665443 345556677
Q ss_pred HHHHHH
Q 010864 299 YNLGTV 304 (498)
Q Consensus 299 ~~Lg~~ 304 (498)
..||.+
T Consensus 156 ~~LGvl 161 (171)
T PRK08307 156 KYLGFL 161 (171)
T ss_pred HHHHHH
Confidence 777765
No 482
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.45 E-value=49 Score=25.64 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh
Q 010864 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (498)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 153 (498)
..|+.+..+++.. -..|+|++|+.+|..+++.
T Consensus 4 ~~Ai~~a~~Ave~-----D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQR-----DQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHH-----HHccCHHHHHHHHHHHHHH
Confidence 3456666666655 4468889999999988764
No 483
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=40.90 E-value=4.2e+02 Score=27.27 Aligned_cols=62 Identities=18% Similarity=0.035 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh-CCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL-CPTL-HDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l-~p~~-~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al 237 (498)
-....+..++..++ |..|...|...+.. .++. ...+..+..+|.. +..-++.+|.+.++..+
T Consensus 133 ~~~~~a~~l~n~~~--------------y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~--WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 133 REWRRAKELFNRYD--------------YGAAARILEELLRRLPGREEYQRYKDLCEGYDA--WDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Confidence 34566777788888 99999999999985 4433 2455666555543 55889999996555443
No 484
>PF13041 PPR_2: PPR repeat family
Probab=40.63 E-value=1.1e+02 Score=20.79 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh--cCCCHHHHHHH
Q 010864 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL--QFDFHRAIYNL 301 (498)
Q Consensus 250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l--~P~~~~a~~~L 301 (498)
+..+|+.+-..|.+.|++ ++|.+.|++..+. .|+ ...+..+
T Consensus 2 ~~~~yn~li~~~~~~~~~----------~~a~~l~~~M~~~g~~P~-~~Ty~~l 44 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKF----------EEALKLFKEMKKRGIKPD-SYTYNIL 44 (50)
T ss_pred chHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHcCCCCC-HHHHHHH
Confidence 456788888899999999 9999999999975 455 3344333
No 485
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=40.55 E-value=2e+02 Score=29.44 Aligned_cols=92 Identities=15% Similarity=-0.009 Sum_probs=65.5
Q ss_pred hhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--C----
Q 010864 184 KDALLEEACKKYDEATRL---------CPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLN--W---- 248 (498)
Q Consensus 184 ~~~~~~~A~~~~~~Al~l---------~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~~~Al~l~--P---- 248 (498)
....++++-....++... +|+--...+.++..+...|.++++++-+. .+-||.+.- |
T Consensus 142 ~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~--------n~lka~~~vs~~Di~~ 213 (413)
T COG5600 142 NQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCE--------NFLKASKEVSMPDISE 213 (413)
T ss_pred hHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHH--------HHHHhcccccccccch
Confidence 344577777777776664 33444566777777777777799998887 333444331 2
Q ss_pred ----CCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCC
Q 010864 249 ----NSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFD 293 (498)
Q Consensus 249 ----~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~ 293 (498)
+....++.||.+|.-..++ .+|...+++|+..-|+
T Consensus 214 ~~~sq~v~f~YYLG~~~l~~en~----------heA~~~L~~aFl~c~~ 252 (413)
T COG5600 214 YQKSQVVVFHYYLGIYYLLNENF----------HEAFLHLNEAFLQCPW 252 (413)
T ss_pred hhhcceeehhhHHHHHHHHHHhH----------HHHHHHHHHHHHhChh
Confidence 2345689999999999999 9999999999988776
No 486
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.36 E-value=52 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhcchhhHHhhccHHHHHHHHHHHHHh
Q 010864 117 NAAMELINSVTGVDEEGRSRQRILTFAAKRYANAIER 153 (498)
Q Consensus 117 ~~A~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 153 (498)
..|..++.+++.. -..|+|++|+.+|.++|+.
T Consensus 4 ~~a~~l~~~Ave~-----D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 4 LAAKEVLKRAVEL-----DQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHH-----HHhccHHHHHHHHHHHHHH
Confidence 4566677776655 3456777777777776653
No 487
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=40.32 E-value=51 Score=33.93 Aligned_cols=61 Identities=16% Similarity=0.153 Sum_probs=42.2
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 137 QRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 137 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
+.-+..|+.++++|.. -++|+.|.++|.++..+|+.+.- .+.++...|.+|.+.+.+|-..
T Consensus 331 ~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~--eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 331 QELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDN--ESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SS--HHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhccccc--chHHHHHHHHHHHHHHHHHhhc
Confidence 3456677888887765 57788899999999999873221 1234556799999999998765
No 488
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=39.55 E-value=90 Score=19.09 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 010864 237 TKNYEKAVQLNWNSPQALNNWGLALQEL 264 (498)
Q Consensus 237 l~~~~~Al~l~P~~~~a~~~lg~~l~~~ 264 (498)
+....+++..+|.+-.+|+.+-.++..+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 4677889999999999999998887654
No 489
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=39.43 E-value=2.1e+02 Score=25.04 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=36.1
Q ss_pred HhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 010864 135 SRQRILTFAAKRYANAIERNPEDYDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRL 201 (498)
Q Consensus 135 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l 201 (498)
..+|+-++--..+.....-+.-+++.+..+|.+|...|. ..+|-+.+.+|-+-
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~--------------~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN--------------TREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc--------------hhhHHHHHHHHHHh
Confidence 345666666666666665566789999999999999999 99999999888653
No 490
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=39.29 E-value=1.4e+02 Score=23.15 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=18.1
Q ss_pred HHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHH
Q 010864 260 ALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIY 299 (498)
Q Consensus 260 ~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~ 299 (498)
-+-+.|++ .+....+.+|++.+.+++...||+..-..
T Consensus 15 e~D~~gr~---~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 15 KAEKEGNA---EDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHhcCCH---HHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 34456776 12222234444444444555777765333
No 491
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=39.09 E-value=7.4e+02 Score=29.54 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCcchH---HhhhhhHHHHHHHHHHHH
Q 010864 253 ALNNWGLALQELSAIVPA---REKQTIVRTAISKFRAAI 288 (498)
Q Consensus 253 a~~~lg~~l~~~g~~~~a---~~~~~~~~~Ai~~~~~Al 288 (498)
.+.-+|.-+.+.+.+++| ++.-|++++|+.+|+.+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhc
Confidence 444455666666777666 677777799988887654
No 492
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=38.78 E-value=4.4e+02 Score=26.83 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHhc
Q 010864 207 DAFYNWAIAISDRAKMR-----GRTKEAEELWKQATKNYEKAVQL 246 (498)
Q Consensus 207 ~a~~~lg~~~~~~~~~~-----g~~~eA~~~~~~Al~~~~~Al~l 246 (498)
.+++|+|.++..++... ...++|...|++|--.|+-..+.
T Consensus 108 ~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~ 152 (377)
T PF03097_consen 108 CVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLREN 152 (377)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666654433 34566677777776666655543
No 493
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.55 E-value=1.5e+02 Score=39.10 Aligned_cols=91 Identities=21% Similarity=0.181 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQAT 237 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al 237 (498)
++.+...|..+.++|+ .++|-..|..|++++-....+|..+|.-+..+....+.- +..-..|+
T Consensus 2812 aeff~lkG~f~~kL~~--------------~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~n---i~~a~~av 2874 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGK--------------FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVN---ISFACNAV 2874 (3550)
T ss_pred HHHHHhhhHHHHHhcC--------------cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcc---cHHHHHHH
Confidence 5678889999999999 999999999999999999999999999988754444331 23334566
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Q 010864 238 KNYEKAVQLNWNSPQALNNWGLALQELSA 266 (498)
Q Consensus 238 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 266 (498)
.+|-+|....- +..+.-.++.+++-+.-
T Consensus 2875 sCyLqA~~~~~-~skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2875 SCYLQAARLYN-SSKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHHHhcccc-chhhHHHHHHHHHHHHh
Confidence 77777775542 34555666666665543
No 494
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=38.35 E-value=99 Score=19.49 Aligned_cols=35 Identities=14% Similarity=0.021 Sum_probs=23.1
Q ss_pred HHHHHHHH--HHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh
Q 010864 251 PQALNNWG--LALQELSAIVPAREKQTIVRTAISKFRAAIQL 290 (498)
Q Consensus 251 ~~a~~~lg--~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l 290 (498)
+.+.++|| .+|..-..- -..|.++|+.+|++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g-----~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGG-----VPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTS-----SCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCC-----ccccccchHHHHHHHHHc
Confidence 46788888 444433211 134679999999999765
No 495
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=38.23 E-value=59 Score=27.63 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=39.0
Q ss_pred ccccCCcccccccccCCCCC-----CCCeeeEeecCCceeeeecChhhhhhHHHHHHHHH
Q 010864 427 IRIEVPDIVSVSACADLTLP-----PGAGLCIETIHGPVFLVADSWEALDGWLDAIRLVY 481 (498)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 481 (498)
..|.+.+|.++.+....+.- .-+.|.+.|..=.+-|+|.+.+..+-|+.+|+.+.
T Consensus 62 ~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 62 KSIRIESVTEVKDGNPSPPGLKKPDHNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred cceEEeeeEEecCCCCCCccccccccceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 34778888887755442111 23456666655567999999999999999998764
No 496
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=37.69 E-value=4.6e+02 Score=26.77 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEAT 199 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al 199 (498)
..+++|+|.+|.+.+........ .......+|+..|++|-
T Consensus 109 ~sVLfNigal~s~~As~~~~~~~--~s~e~~K~A~~~fq~AA 148 (353)
T cd09243 109 ASMLFNVALWYTKHASKLAGKED--ITEDEAKDVHKSLRTAA 148 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHHH
Confidence 35678888888553321111111 11133556666666553
No 497
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=37.66 E-value=4.3e+02 Score=26.79 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHH
Q 010864 158 YDALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATR 200 (498)
Q Consensus 158 ~~a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 200 (498)
..+++|+|.++.+.+.... ......+++|+.+|++|-.
T Consensus 119 a~vlfNiaal~s~la~~~~-----~~~~eglK~A~~~fq~AAG 156 (346)
T cd09240 119 VCVLFNIAALQSQIAAEQN-----LDTDEGLKLAAKLFQQAAG 156 (346)
T ss_pred HHHHHHHHHHHHHHHHHcC-----CCChHHHHHHHHHHHHHHH
Confidence 4567888888888775211 1122336667777776654
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=37.55 E-value=3.7e+02 Score=25.63 Aligned_cols=154 Identities=14% Similarity=0.155 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCcCCCCCCCCchhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH-------H--------HHc
Q 010864 160 ALYNWALVLQESADNVSLDSTSPSKDALLEEACKKYDEATRLCPTL-HDAFYNWAIAISDR-------A--------KMR 223 (498)
Q Consensus 160 a~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~A~~~~~~Al~l~p~~-~~a~~~lg~~~~~~-------~--------~~~ 223 (498)
-+..++.+..+.++ |++.+.+.++++..++.. .+=.+.|..+|-.. . +..
T Consensus 3 ~li~~Aklaeq~eR--------------y~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~ 68 (236)
T PF00244_consen 3 ELIYLAKLAEQAER--------------YDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE 68 (236)
T ss_dssp HHHHHHHHHHHTTH--------------HHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--------------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc
Confidence 35678888888998 999999999999998873 33344444444332 0 001
Q ss_pred CC----HHHHHHHHHH-----HHHHHHHHHhc-----CCC--CH----HHHHHHHHHHHHhcCcchHHhhhhhHHHHHHH
Q 010864 224 GR----TKEAEELWKQ-----ATKNYEKAVQL-----NWN--SP----QALNNWGLALQELSAIVPAREKQTIVRTAISK 283 (498)
Q Consensus 224 g~----~~eA~~~~~~-----Al~~~~~Al~l-----~P~--~~----~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~ 283 (498)
++ ....++.|.+ -...+..++.+ -|. +. ..+-..|..|.-+-.+.....+..-.+.|..+
T Consensus 69 ~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~a 148 (236)
T PF00244_consen 69 NKGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEA 148 (236)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHh
Confidence 11 1111111211 11222222211 122 22 22344566666555554445556667899999
Q ss_pred HHHHHHh-----cCCCH---HHHHHHHHHHHH-cchhHHhccCCCCCCCCChhHHHHHHHHHHHHHHh
Q 010864 284 FRAAIQL-----QFDFH---RAIYNLGTVLYG-LAEDTLRTGGTVNPREVSPNELYSQSAIYIAAAHA 342 (498)
Q Consensus 284 ~~~Al~l-----~P~~~---~a~~~Lg~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 342 (498)
|++|+.+ .|.++ ....|.+..|+. +|+ +.....-|...|..|..
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~---------------~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND---------------PEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS----------------HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC---------------hHHHHHHHHHHHHHHHh
Confidence 9999975 56665 345566666655 444 23334555556666653
No 499
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=37.27 E-value=1.3e+02 Score=27.20 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHh----cCCCHHHHH
Q 010864 224 GRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQL----QFDFHRAIY 299 (498)
Q Consensus 224 g~~~eA~~~~~~Al~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l----~P~~~~a~~ 299 (498)
+.-..+.+.|++++..+.+-..+.+.+...+.++|..+-..... .+.+.++-+++.++..++. ...+...|.
T Consensus 80 ~~g~s~~~~w~~~~~~~~~~~~L~~~d~eiL~~lG~~LG~~D~e----~Q~k~i~L~~~~L~~~~~~a~~~~~k~~Kmy~ 155 (170)
T TIGR02833 80 GEGLTVYEAWKKALNEVWKQTALQKSEKEILLQFGKTLGESDRE----GQQKHINLTLEHLERQLTEAEDEQKKNEKMYR 155 (170)
T ss_pred CCCCCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 34456666788888888888888888999999999887655442 4555566666655555433 345566777
Q ss_pred HHHHH
Q 010864 300 NLGTV 304 (498)
Q Consensus 300 ~Lg~~ 304 (498)
.||.+
T Consensus 156 ~LGvl 160 (170)
T TIGR02833 156 YLGVL 160 (170)
T ss_pred HHHHH
Confidence 77764
No 500
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.99 E-value=6.7e+02 Score=33.62 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHH------HhcC----------CC
Q 010864 187 LLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNY-EKA------VQLN----------WN 249 (498)
Q Consensus 187 ~~~~A~~~~~~Al~l~p~~~~a~~~lg~~~~~~~~~~g~~~eA~~~~~~Al~~~-~~A------l~l~----------P~ 249 (498)
....++-.|-+..+.+--.-.+.+.|..+|.-- .+.+++|...+++=+++| +.. ++.- -.
T Consensus 2734 e~A~~in~fakvArkh~l~~vcl~~L~~iytlp---~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q 2810 (3550)
T KOG0889|consen 2734 ELAWAINRFAKVARKHGLPDVCLNQLAKIYTLP---NVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQ 2810 (3550)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhccC---cchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHH
Confidence 345556666666664444455677777776531 577778876665433332 222 1111 11
Q ss_pred CHHHHHHHHHHHHHhcCcchHHhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcchhHHhccCCCCCCCCChhHH
Q 010864 250 SPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTVNPREVSPNEL 329 (498)
Q Consensus 250 ~~~a~~~lg~~l~~~g~~~~a~~~~~~~~~Ai~~~~~Al~l~P~~~~a~~~Lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 329 (498)
.+..++..|..+.++|+. ++|-..|..|++++-.-+.+|.+.|.-+.+.-. .+......
T Consensus 2811 ~aeff~lkG~f~~kL~~~----------eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~-----------~e~~ni~~ 2869 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKF----------EEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFN-----------KEPVNISF 2869 (3550)
T ss_pred HHHHHHhhhHHHHHhcCc----------chhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----------ccCcccHH
Confidence 345567778888888888 999999999999999999999999988776654 11111344
Q ss_pred HHHHHHHHHHHHhcCCCH
Q 010864 330 YSQSAIYIAAAHALKPSY 347 (498)
Q Consensus 330 ~~~A~~~~~~Al~l~p~~ 347 (498)
-..|..||-+|....-+.
T Consensus 2870 a~~avsCyLqA~~~~~~s 2887 (3550)
T KOG0889|consen 2870 ACNAVSCYLQAARLYNSS 2887 (3550)
T ss_pred HHHHHHHHHHHhccccch
Confidence 577888888887766443
Done!