Query 010866
Match_columns 498
No_of_seqs 495 out of 2810
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02327 CTP synthase 100.0 3E-183 6E-188 1455.5 42.6 477 1-479 1-478 (557)
2 COG0504 PyrG CTP synthase (UTP 100.0 1E-181 2E-186 1407.9 41.1 457 1-478 1-459 (533)
3 PRK05380 pyrG CTP synthetase; 100.0 2E-176 4E-181 1400.8 41.7 464 1-485 2-474 (533)
4 TIGR00337 PyrG CTP synthase. C 100.0 4E-176 9E-181 1397.5 43.0 464 1-484 1-473 (525)
5 KOG2387 CTP synthase (UTP-ammo 100.0 2E-176 4E-181 1346.5 38.1 471 1-471 1-472 (585)
6 PF06418 CTP_synth_N: CTP synt 100.0 5E-141 1E-145 1039.7 17.2 276 1-284 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 2E-132 4E-137 971.9 23.0 255 2-262 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 4E-40 8.8E-45 322.2 14.7 169 297-487 1-177 (229)
9 COG0505 CarA Carbamoylphosphat 100.0 7.7E-36 1.7E-40 304.0 9.6 204 202-436 67-290 (368)
10 cd01746 GATase1_CTP_Synthase T 100.0 2.8E-32 6.1E-37 268.5 16.1 175 298-483 1-176 (235)
11 PRK12564 carbamoyl phosphate s 100.0 1.4E-30 3E-35 270.7 9.6 201 203-434 69-286 (360)
12 PRK12838 carbamoyl phosphate s 100.0 3.5E-30 7.6E-35 267.0 11.8 196 203-433 67-274 (354)
13 TIGR01368 CPSaseIIsmall carbam 100.0 2.4E-30 5.2E-35 268.6 9.8 201 202-434 64-281 (358)
14 PLN02771 carbamoyl-phosphate s 100.0 4.5E-30 9.7E-35 269.6 9.5 202 202-435 120-349 (415)
15 CHL00197 carA carbamoyl-phosph 100.0 7.7E-29 1.7E-33 259.0 9.3 194 202-421 70-293 (382)
16 KOG0370 Multifunctional pyrimi 99.9 1.8E-24 3.9E-29 238.3 10.5 213 178-422 50-271 (1435)
17 COG2071 Predicted glutamine am 99.8 4E-18 8.6E-23 167.3 10.9 136 315-484 30-183 (243)
18 COG0118 HisH Glutamine amidotr 99.7 7.7E-18 1.7E-22 161.6 9.6 110 298-446 2-123 (204)
19 PF07722 Peptidase_C26: Peptid 99.7 9.7E-17 2.1E-21 156.4 6.9 136 314-484 27-181 (217)
20 PRK08007 para-aminobenzoate sy 99.6 3.9E-15 8.5E-20 141.8 10.6 94 300-417 2-98 (187)
21 PRK11366 puuD gamma-glutamyl-g 99.6 1.2E-14 2.5E-19 145.1 13.2 159 297-483 7-188 (254)
22 TIGR00566 trpG_papA glutamine 99.6 1.1E-14 2.3E-19 138.9 11.0 92 300-415 2-96 (188)
23 PRK06895 putative anthranilate 99.6 3.5E-14 7.6E-19 135.2 12.9 94 298-415 2-96 (190)
24 cd01744 GATase1_CPSase Small c 99.5 5.6E-14 1.2E-18 132.5 12.2 96 300-419 1-97 (178)
25 TIGR00888 guaA_Nterm GMP synth 99.5 1.1E-13 2.3E-18 131.3 12.3 91 300-414 1-93 (188)
26 PRK06774 para-aminobenzoate sy 99.5 8E-14 1.7E-18 132.8 11.2 92 300-415 2-96 (191)
27 PRK07765 para-aminobenzoate sy 99.5 8.9E-14 1.9E-18 135.5 11.3 99 298-415 1-100 (214)
28 PRK05670 anthranilate synthase 99.5 2.6E-13 5.5E-18 129.1 11.7 94 300-416 2-97 (189)
29 CHL00101 trpG anthranilate syn 99.5 4.2E-13 9.1E-18 128.1 12.0 96 300-416 2-97 (190)
30 PRK07649 para-aminobenzoate/an 99.4 5E-13 1.1E-17 128.4 11.1 95 300-416 2-97 (195)
31 cd01742 GATase1_GMP_Synthase T 99.4 7.1E-13 1.5E-17 124.2 11.0 93 300-414 1-93 (181)
32 PRK13142 hisH imidazole glycer 99.4 5.1E-13 1.1E-17 128.6 9.6 106 300-446 2-117 (192)
33 PRK08857 para-aminobenzoate sy 99.4 8.5E-13 1.8E-17 126.1 10.9 94 300-415 2-96 (193)
34 PRK05637 anthranilate synthase 99.4 9.7E-13 2.1E-17 127.9 10.9 91 299-414 3-96 (208)
35 PF00117 GATase: Glutamine ami 99.4 5.5E-13 1.2E-17 125.8 8.9 94 302-415 2-96 (192)
36 PRK13170 hisH imidazole glycer 99.4 1.2E-12 2.5E-17 125.8 11.0 142 298-482 1-147 (196)
37 PRK13152 hisH imidazole glycer 99.4 2.2E-12 4.7E-17 124.1 12.9 141 300-482 2-154 (201)
38 cd01743 GATase1_Anthranilate_S 99.4 1.9E-12 4E-17 122.3 11.9 96 300-416 1-96 (184)
39 PRK01077 cobyrinic acid a,c-di 99.4 1.8E-11 3.8E-16 131.4 19.8 89 297-408 245-339 (451)
40 PLN02335 anthranilate synthase 99.4 1.8E-12 3.9E-17 127.1 9.7 99 296-416 17-116 (222)
41 CHL00188 hisH imidazole glycer 99.4 3.8E-12 8.2E-17 124.0 11.0 113 298-446 2-123 (210)
42 COG0512 PabA Anthranilate/para 99.3 3.5E-12 7.5E-17 122.0 10.0 99 298-418 2-101 (191)
43 PRK00758 GMP synthase subunit 99.3 6.6E-12 1.4E-16 118.7 11.0 89 300-415 2-91 (184)
44 PLN02832 glutamine amidotransf 99.3 5.6E-12 1.2E-16 125.7 10.5 119 298-446 2-131 (248)
45 TIGR01815 TrpE-clade3 anthrani 99.3 8.3E-12 1.8E-16 140.5 13.1 100 296-417 515-614 (717)
46 PRK13566 anthranilate synthase 99.3 1.1E-11 2.4E-16 139.7 12.9 99 296-416 525-623 (720)
47 PRK14004 hisH imidazole glycer 99.3 1.2E-11 2.5E-16 120.6 10.7 82 300-409 2-90 (210)
48 PRK13181 hisH imidazole glycer 99.3 1.6E-11 3.4E-16 117.8 10.3 81 300-408 2-89 (199)
49 TIGR01823 PabB-fungal aminodeo 99.3 1.7E-11 3.7E-16 138.7 11.8 104 296-418 4-113 (742)
50 TIGR00379 cobB cobyrinic acid 99.3 2.4E-10 5.2E-15 122.7 19.7 89 297-408 244-338 (449)
51 PLN02347 GMP synthetase 99.3 3.2E-11 7E-16 132.0 13.2 93 299-415 12-110 (536)
52 PRK13146 hisH imidazole glycer 99.3 2.9E-11 6.3E-16 117.3 10.8 85 298-407 2-93 (209)
53 PRK00074 guaA GMP synthase; Re 99.2 4E-11 8.8E-16 130.6 12.1 92 299-414 5-98 (511)
54 PRK14607 bifunctional glutamin 99.2 2.7E-11 5.9E-16 132.6 10.6 96 300-417 2-99 (534)
55 PRK00784 cobyric acid synthase 99.2 3E-10 6.6E-15 123.1 17.4 85 297-408 251-342 (488)
56 TIGR00313 cobQ cobyric acid sy 99.2 3.3E-10 7.1E-15 122.6 17.5 307 4-406 1-334 (475)
57 cd01745 GATase1_2 Subgroup of 99.2 6.4E-11 1.4E-15 113.0 9.3 86 314-416 22-125 (189)
58 PRK09065 glutamine amidotransf 99.2 5.5E-11 1.2E-15 117.6 8.9 56 359-414 51-111 (237)
59 PRK13141 hisH imidazole glycer 99.2 1.1E-10 2.4E-15 112.3 10.7 83 299-408 1-89 (205)
60 PRK13143 hisH imidazole glycer 99.2 2.7E-10 5.9E-15 109.6 12.2 84 298-408 1-88 (200)
61 cd01741 GATase1_1 Subgroup of 99.2 2.6E-10 5.7E-15 107.7 11.6 96 359-483 43-146 (188)
62 PF00988 CPSase_sm_chain: Carb 99.1 3.7E-12 8.1E-17 115.4 -2.3 65 202-267 66-130 (131)
63 PRK06490 glutamine amidotransf 99.1 2.6E-10 5.6E-15 113.1 10.1 100 297-416 7-111 (239)
64 PLN02617 imidazole glycerol ph 99.1 9.1E-10 2E-14 120.7 14.4 85 297-408 6-96 (538)
65 cd01748 GATase1_IGP_Synthase T 99.1 2.5E-10 5.4E-15 109.2 7.7 80 300-407 1-87 (198)
66 PRK13896 cobyrinic acid a,c-di 99.1 1.1E-08 2.3E-13 109.7 20.1 290 1-405 1-322 (433)
67 PRK09522 bifunctional glutamin 99.0 3.4E-10 7.3E-15 124.0 8.4 97 298-415 2-101 (531)
68 PRK13525 glutamine amidotransf 99.0 5.8E-10 1.3E-14 106.7 9.0 86 298-411 2-92 (189)
69 COG0518 GuaA GMP synthase - Gl 99.0 7.7E-10 1.7E-14 107.1 9.5 101 299-424 3-109 (198)
70 PLN02889 oxo-acid-lyase/anthra 99.0 7.8E-10 1.7E-14 126.8 10.8 100 297-417 81-188 (918)
71 PRK07053 glutamine amidotransf 99.0 8.9E-10 1.9E-14 109.0 9.9 96 299-414 4-106 (234)
72 PRK05665 amidotransferase; Pro 99.0 3.2E-09 6.8E-14 105.5 13.6 57 359-415 54-115 (240)
73 PRK07567 glutamine amidotransf 99.0 1.7E-09 3.8E-14 107.4 10.7 56 359-414 48-116 (242)
74 PRK13527 glutamine amidotransf 99.0 1.2E-09 2.6E-14 105.0 9.2 76 314-411 17-97 (200)
75 TIGR03800 PLP_synth_Pdx2 pyrid 99.0 1.2E-09 2.6E-14 104.3 8.3 82 299-408 1-87 (184)
76 TIGR01737 FGAM_synth_I phospho 99.0 7.9E-09 1.7E-13 101.6 12.9 90 298-412 1-101 (227)
77 PRK13526 glutamine amidotransf 98.9 2.7E-09 5.8E-14 101.9 7.9 80 298-406 3-87 (179)
78 TIGR01855 IMP_synth_hisH imida 98.9 4.6E-09 9.9E-14 100.8 8.9 80 300-407 1-87 (196)
79 KOG1224 Para-aminobenzoate (PA 98.9 5.9E-09 1.3E-13 111.7 9.4 98 296-413 13-117 (767)
80 PRK03619 phosphoribosylformylg 98.9 2.2E-08 4.7E-13 98.1 12.4 85 298-407 1-95 (219)
81 KOG0623 Glutamine amidotransfe 98.8 1.1E-08 2.4E-13 105.0 10.0 108 300-446 4-123 (541)
82 PRK01175 phosphoribosylformylg 98.8 1.7E-08 3.7E-13 101.6 9.9 90 297-406 3-104 (261)
83 PRK08250 glutamine amidotransf 98.8 2.4E-08 5.3E-13 98.7 10.3 56 359-414 42-107 (235)
84 cd01747 GATase1_Glutamyl_Hydro 98.8 1.8E-08 3.9E-13 101.9 9.4 82 314-412 23-113 (273)
85 cd01750 GATase1_CobQ Type 1 gl 98.8 1.3E-08 2.8E-13 97.7 7.3 83 300-408 1-89 (194)
86 COG0047 PurL Phosphoribosylfor 98.7 5E-08 1.1E-12 95.8 9.4 84 297-405 2-95 (231)
87 KOG0026 Anthranilate synthase, 98.7 4.3E-08 9.3E-13 92.1 7.9 93 299-413 20-114 (223)
88 cd01740 GATase1_FGAR_AT Type 1 98.7 6.4E-08 1.4E-12 95.8 8.6 83 312-412 11-105 (238)
89 cd01749 GATase1_PB Glutamine A 98.7 5.2E-08 1.1E-12 92.6 7.4 75 312-410 9-88 (183)
90 cd03130 GATase1_CobB Type 1 gl 98.5 1.9E-07 4.2E-12 89.9 7.0 73 312-406 12-90 (198)
91 PRK06278 cobyrinic acid a,c-di 98.5 2.1E-07 4.6E-12 100.9 7.9 77 298-407 1-81 (476)
92 KOG1622 GMP synthase [Nucleoti 98.4 4.9E-07 1.1E-11 95.9 5.8 51 361-414 58-111 (552)
93 PF13507 GATase_5: CobB/CobQ-l 98.3 9.1E-07 2E-11 89.2 5.5 89 297-405 1-104 (259)
94 COG0311 PDX2 Predicted glutami 98.2 4E-06 8.7E-11 80.3 7.4 84 298-409 1-90 (194)
95 KOG3179 Predicted glutamine sy 98.0 2.2E-05 4.8E-10 76.3 7.6 57 358-414 55-116 (245)
96 cd01653 GATase1 Type 1 glutami 97.9 4.8E-05 1E-09 61.6 8.1 76 312-404 13-92 (115)
97 cd03144 GATase1_ScBLP_like Typ 97.9 1.1E-05 2.3E-10 72.1 4.1 84 300-404 2-90 (114)
98 PRK05368 homoserine O-succinyl 97.9 8.3E-05 1.8E-09 76.6 10.7 111 296-411 34-155 (302)
99 cd03146 GAT1_Peptidase_E Type 97.9 2.5E-05 5.4E-10 76.0 6.6 91 296-405 30-128 (212)
100 PF01174 SNO: SNO glutamine am 97.9 1.9E-05 4.1E-10 76.0 5.2 71 311-405 6-82 (188)
101 COG1797 CobB Cobyrinic acid a, 97.8 0.0013 2.9E-08 70.5 19.3 85 298-405 246-337 (451)
102 PLN03206 phosphoribosylformylg 97.8 5.5E-05 1.2E-09 90.6 9.8 91 296-406 1036-1141(1307)
103 TIGR01857 FGAM-synthase phosph 97.8 6.4E-05 1.4E-09 89.5 10.1 99 296-405 976-1088(1239)
104 PF07685 GATase_3: CobB/CobQ-l 97.8 2.5E-05 5.4E-10 72.7 4.5 50 359-408 4-59 (158)
105 PRK05297 phosphoribosylformylg 97.7 0.0001 2.2E-09 88.7 9.9 91 296-406 1034-1139(1290)
106 TIGR01735 FGAM_synt phosphorib 97.7 0.00013 2.9E-09 87.6 9.6 90 296-405 1054-1158(1310)
107 cd03128 GAT_1 Type 1 glutamine 97.5 0.00021 4.6E-09 55.2 6.0 75 313-404 14-92 (92)
108 PHA03366 FGAM-synthase; Provis 97.3 0.00071 1.5E-08 81.6 9.9 91 294-405 1025-1131(1304)
109 TIGR01739 tegu_FGAM_synt herpe 97.1 0.0017 3.8E-08 77.9 9.6 90 295-405 927-1032(1202)
110 cd03131 GATase1_HTS Type 1 glu 96.9 0.0027 5.8E-08 60.8 7.3 53 360-412 60-119 (175)
111 TIGR01382 PfpI intracellular p 96.9 0.0042 9.2E-08 57.1 8.3 44 362-405 60-106 (166)
112 KOG3210 Imidazoleglycerol-phos 96.8 0.0049 1.1E-07 58.7 7.8 87 299-407 13-107 (226)
113 PRK11780 isoprenoid biosynthes 96.7 0.0024 5.1E-08 63.0 5.8 49 360-408 83-145 (217)
114 cd03134 GATase1_PfpI_like A ty 96.7 0.0095 2.1E-07 54.7 8.7 44 362-405 62-108 (165)
115 COG1492 CobQ Cobyric acid synt 96.6 0.0028 6.1E-08 69.0 5.2 111 1-153 1-139 (486)
116 cd03133 GATase1_ES1 Type 1 glu 96.4 0.0049 1.1E-07 60.7 5.6 49 360-408 80-142 (213)
117 cd03169 GATase1_PfpI_1 Type 1 96.4 0.0042 9.2E-08 58.3 4.8 45 362-406 76-123 (180)
118 PRK05282 (alpha)-aspartyl dipe 96.1 0.018 3.9E-07 57.5 7.5 106 280-408 16-130 (233)
119 PRK12374 putative dithiobiotin 95.9 0.049 1.1E-06 53.5 9.5 169 1-221 2-176 (231)
120 cd03132 GATase1_catalase Type 95.8 0.038 8.1E-07 49.8 7.7 99 299-405 3-109 (142)
121 cd02037 MRP-like MRP (Multiple 95.7 0.067 1.5E-06 49.5 9.3 129 7-220 4-132 (169)
122 PRK00090 bioD dithiobiotin syn 95.6 0.029 6.2E-07 54.2 6.6 167 4-221 2-174 (222)
123 cd03147 GATase1_Ydr533c_like T 95.5 0.021 4.6E-07 56.7 5.5 48 360-407 92-143 (231)
124 COG0693 ThiJ Putative intracel 95.3 0.021 4.6E-07 53.8 4.6 45 361-405 65-113 (188)
125 PF01965 DJ-1_PfpI: DJ-1/PfpI 95.0 0.016 3.5E-07 52.8 2.8 45 361-405 36-85 (147)
126 PRK13768 GTPase; Provisional 95.0 0.17 3.8E-06 50.6 10.1 39 2-42 3-41 (253)
127 cd03140 GATase1_PfpI_3 Type 1 94.9 0.042 9E-07 51.2 5.1 46 361-406 59-106 (170)
128 PRK04155 chaperone protein Hch 94.7 0.043 9.3E-07 56.4 5.2 46 360-405 145-194 (287)
129 cd03137 GATase1_AraC_1 AraC tr 94.7 0.048 1E-06 51.1 5.0 47 359-405 61-110 (187)
130 cd01983 Fer4_NifH The Fer4_Nif 94.6 0.095 2.1E-06 42.2 5.9 33 4-38 2-34 (99)
131 cd03148 GATase1_EcHsp31_like T 94.5 0.058 1.3E-06 53.6 5.3 45 361-405 95-143 (232)
132 COG3442 Predicted glutamine am 94.4 0.036 7.8E-07 55.0 3.6 54 361-414 51-114 (250)
133 cd03141 GATase1_Hsp31_like Typ 94.4 0.055 1.2E-06 53.0 4.8 46 361-406 89-138 (221)
134 PRK09435 membrane ATPase/prote 94.2 0.28 6.2E-06 51.5 9.9 63 3-67 58-128 (332)
135 cd03135 GATase1_DJ-1 Type 1 gl 94.1 0.073 1.6E-06 48.4 4.7 46 361-406 59-108 (163)
136 PRK05632 phosphate acetyltrans 93.9 0.42 9E-06 54.7 11.4 37 1-38 2-38 (684)
137 PRK11574 oxidative-stress-resi 93.8 0.12 2.5E-06 49.2 5.7 45 361-405 65-113 (196)
138 cd03138 GATase1_AraC_2 AraC tr 93.8 0.11 2.4E-06 49.0 5.4 47 359-405 66-118 (195)
139 PRK14974 cell division protein 93.5 1.2 2.6E-05 46.9 13.0 39 2-42 141-179 (336)
140 cd03129 GAT1_Peptidase_E_like 93.3 0.39 8.5E-06 46.4 8.5 106 283-406 17-129 (210)
141 cd00550 ArsA_ATPase Oxyanion-t 93.2 0.34 7.4E-06 48.5 8.2 39 2-42 1-39 (254)
142 TIGR01968 minD_bact septum sit 93.1 2.1 4.6E-05 41.6 13.4 40 2-42 2-41 (261)
143 cd03139 GATase1_PfpI_2 Type 1 92.9 0.12 2.6E-06 48.1 4.2 46 360-405 60-108 (183)
144 cd03136 GATase1_AraC_ArgR_like 92.9 0.21 4.5E-06 46.9 5.7 46 360-405 62-109 (185)
145 TIGR00750 lao LAO/AO transport 92.8 0.72 1.6E-05 47.3 10.0 43 1-45 34-76 (300)
146 TIGR01383 not_thiJ DJ-1 family 92.8 0.16 3.5E-06 47.1 4.9 47 360-406 61-111 (179)
147 PRK10867 signal recognition pa 92.8 1.7 3.6E-05 47.4 13.2 39 2-42 101-140 (433)
148 PF04204 HTS: Homoserine O-suc 92.6 0.31 6.8E-06 50.5 6.9 111 296-413 33-157 (298)
149 TIGR00064 ftsY signal recognit 92.5 2.7 5.8E-05 42.8 13.5 39 2-42 73-111 (272)
150 PF09825 BPL_N: Biotin-protein 92.4 0.38 8.3E-06 51.2 7.5 91 299-405 2-96 (367)
151 KOG1907 Phosphoribosylformylgl 92.3 0.59 1.3E-05 54.4 9.2 89 297-405 1058-1161(1320)
152 KOG1559 Gamma-glutamyl hydrola 92.2 0.19 4.2E-06 50.7 4.6 83 314-413 80-171 (340)
153 TIGR01969 minD_arch cell divis 91.9 0.95 2.1E-05 43.9 9.1 34 9-42 7-40 (251)
154 TIGR03371 cellulose_yhjQ cellu 91.7 0.97 2.1E-05 43.9 9.0 41 1-42 1-41 (246)
155 PF13278 DUF4066: Putative ami 91.7 0.24 5.1E-06 45.7 4.5 46 360-405 59-107 (166)
156 PRK11249 katE hydroperoxidase 91.3 0.49 1.1E-05 54.6 7.3 102 297-406 597-706 (752)
157 TIGR00347 bioD dethiobiotin sy 91.2 1.4 3E-05 40.5 9.0 156 10-216 5-165 (166)
158 PRK11889 flhF flagellar biosyn 90.8 5 0.00011 43.7 13.8 144 2-217 242-385 (436)
159 cd03114 ArgK-like The function 90.4 1.7 3.8E-05 40.0 8.8 38 4-43 2-39 (148)
160 TIGR01001 metA homoserine O-su 90.3 1.2 2.7E-05 46.1 8.4 113 296-413 34-158 (300)
161 cd03115 SRP The signal recogni 90.2 5.3 0.00012 36.9 12.0 37 4-42 3-39 (173)
162 PRK09393 ftrA transcriptional 89.8 0.55 1.2E-05 48.2 5.6 48 358-405 71-120 (322)
163 PF13500 AAA_26: AAA domain; P 89.8 0.8 1.7E-05 43.5 6.3 163 2-219 1-168 (199)
164 TIGR00959 ffh signal recogniti 89.0 3.2 6.9E-05 45.2 10.9 141 3-217 101-247 (428)
165 COG0132 BioD Dethiobiotin synt 88.9 2.3 4.9E-05 42.5 8.9 183 1-230 2-186 (223)
166 PHA02518 ParA-like protein; Pr 88.9 2.4 5.3E-05 39.9 8.9 33 11-43 9-41 (211)
167 TIGR02069 cyanophycinase cyano 88.3 2.5 5.3E-05 42.7 8.8 107 283-405 16-130 (250)
168 PRK13849 putative crown gall t 87.3 7.5 0.00016 38.6 11.5 43 1-44 1-43 (231)
169 PRK14494 putative molybdopteri 87.1 1.2 2.5E-05 44.6 5.6 37 1-39 1-37 (229)
170 PRK10818 cell division inhibit 87.1 8.1 0.00018 38.3 11.7 40 2-42 3-42 (270)
171 TIGR03499 FlhF flagellar biosy 87.1 1 2.2E-05 46.0 5.3 40 2-43 195-236 (282)
172 KOG2764 Putative transcription 86.5 0.92 2E-05 45.5 4.4 41 361-401 66-110 (247)
173 cd02042 ParA ParA and ParB of 86.1 3 6.4E-05 35.1 6.9 36 7-42 4-39 (104)
174 CHL00072 chlL photochlorophyll 85.3 1.5 3.2E-05 45.0 5.4 43 1-46 1-43 (290)
175 cd02035 ArsA ArsA ATPase funct 85.2 5.7 0.00012 38.6 9.3 39 4-44 2-40 (217)
176 PRK13232 nifH nitrogenase redu 84.0 1.7 3.7E-05 43.5 5.2 43 1-45 1-43 (273)
177 PRK14493 putative bifunctional 83.8 2.4 5.3E-05 43.3 6.3 39 1-42 1-39 (274)
178 COG2894 MinD Septum formation 83.6 1.6 3.5E-05 43.9 4.7 38 2-40 3-40 (272)
179 cd03116 MobB Molybdenum is an 83.3 3.1 6.7E-05 39.1 6.3 40 1-42 1-40 (159)
180 cd02040 NifH NifH gene encodes 83.3 2.2 4.7E-05 42.1 5.5 44 1-46 1-44 (270)
181 PRK13230 nitrogenase reductase 82.7 2.4 5.3E-05 42.5 5.7 45 1-47 1-45 (279)
182 cd02029 PRK_like Phosphoribulo 82.6 2.1 4.5E-05 44.1 5.1 43 4-48 2-44 (277)
183 COG0003 ArsA Predicted ATPase 82.0 2.5 5.3E-05 44.4 5.5 49 1-51 2-50 (322)
184 COG4285 Uncharacterized conser 81.7 3.1 6.6E-05 41.6 5.7 80 306-401 6-92 (253)
185 cd03109 DTBS Dethiobiotin synt 81.1 4 8.7E-05 36.8 6.0 37 3-42 2-38 (134)
186 PF02374 ArsA_ATPase: Anion-tr 80.5 2.4 5.2E-05 43.9 4.9 42 1-44 1-42 (305)
187 PF01656 CbiA: CobQ/CobB/MinD/ 79.8 2.8 6.1E-05 38.7 4.7 35 10-44 6-40 (195)
188 cd03145 GAT1_cyanophycinase Ty 79.1 9.3 0.0002 37.4 8.2 107 284-405 18-131 (217)
189 TIGR01425 SRP54_euk signal rec 78.8 3.1 6.8E-05 45.3 5.2 40 2-43 101-140 (429)
190 PRK11670 antiporter inner memb 78.7 18 0.00039 38.5 10.8 45 2-47 108-152 (369)
191 TIGR00176 mobB molybdopterin-g 78.7 3.7 8E-05 38.2 5.0 35 4-40 2-36 (155)
192 PRK12724 flagellar biosynthesi 77.5 3.6 7.8E-05 44.9 5.2 41 2-44 224-265 (432)
193 TIGR01007 eps_fam capsular exo 77.1 4.9 0.00011 38.2 5.5 42 1-43 17-58 (204)
194 PRK07667 uridine kinase; Provi 76.3 5.3 0.00012 38.1 5.5 40 3-44 19-58 (193)
195 CHL00175 minD septum-site dete 76.2 5.3 0.00012 40.0 5.7 45 2-47 16-61 (281)
196 cd02033 BchX Chlorophyllide re 76.0 4.8 0.0001 42.3 5.5 42 1-44 31-72 (329)
197 cd02028 UMPK_like Uridine mono 76.0 5.3 0.00012 37.8 5.4 41 4-46 2-42 (179)
198 PRK13233 nifH nitrogenase redu 75.7 4.9 0.00011 40.1 5.4 43 1-45 2-45 (275)
199 cd02034 CooC The accessory pro 75.0 5.8 0.00013 35.2 5.0 36 4-41 2-37 (116)
200 PRK10416 signal recognition pa 74.7 5.5 0.00012 41.6 5.6 39 2-42 115-153 (318)
201 PF03575 Peptidase_S51: Peptid 74.1 2.9 6.3E-05 38.5 3.0 73 315-403 4-81 (154)
202 PRK01911 ppnK inorganic polyph 74.0 5.8 0.00013 41.0 5.5 36 361-401 63-98 (292)
203 PRK13185 chlL protochlorophyll 73.2 7 0.00015 38.8 5.7 42 2-45 3-44 (270)
204 PF06564 YhjQ: YhjQ protein; 73.0 6.2 0.00013 39.9 5.3 46 1-47 1-52 (243)
205 TIGR03018 pepcterm_TyrKin exop 72.8 8 0.00017 37.1 5.8 42 1-43 35-77 (207)
206 PRK13235 nifH nitrogenase redu 72.8 6.6 0.00014 39.3 5.4 43 1-45 1-43 (274)
207 cd01672 TMPK Thymidine monopho 72.5 6.5 0.00014 36.2 5.0 36 2-39 1-36 (200)
208 PRK13236 nitrogenase reductase 71.5 7.2 0.00016 39.9 5.5 42 2-45 7-48 (296)
209 PRK10037 cell division protein 71.5 6.4 0.00014 38.9 5.0 41 1-42 1-41 (250)
210 PRK12726 flagellar biosynthesi 71.0 7.2 0.00016 42.2 5.5 39 2-42 207-245 (407)
211 cd02036 MinD Bacterial cell di 71.0 6.3 0.00014 35.9 4.4 34 9-42 6-39 (179)
212 PRK13234 nifH nitrogenase redu 70.9 8.2 0.00018 39.5 5.7 43 1-45 4-46 (295)
213 PRK05703 flhF flagellar biosyn 69.5 7.1 0.00015 42.4 5.1 39 2-42 222-262 (424)
214 cd02117 NifH_like This family 69.4 8.9 0.00019 36.8 5.3 42 3-46 2-43 (212)
215 PRK03372 ppnK inorganic polyph 68.9 9.5 0.00021 39.7 5.7 94 299-401 7-106 (306)
216 cd02032 Bchl_like This family 68.9 11 0.00024 37.4 6.0 40 4-45 3-42 (267)
217 cd01830 XynE_like SGNH_hydrola 68.7 16 0.00035 34.6 6.9 87 92-186 21-131 (204)
218 PLN02929 NADH kinase 67.6 7.3 0.00016 40.6 4.5 63 311-400 34-96 (301)
219 KOG2825 Putative arsenite-tran 67.4 6.1 0.00013 40.6 3.8 43 2-46 20-62 (323)
220 PRK02155 ppnK NAD(+)/NADH kina 67.3 12 0.00026 38.6 6.1 89 299-401 7-97 (291)
221 PRK13869 plasmid-partitioning 66.0 8.9 0.00019 41.2 5.0 43 2-45 122-164 (405)
222 PRK10751 molybdopterin-guanine 66.0 13 0.00028 35.7 5.6 38 2-41 7-44 (173)
223 PRK13231 nitrogenase reductase 65.3 6.7 0.00015 38.9 3.7 42 1-45 2-43 (264)
224 TIGR01287 nifH nitrogenase iro 64.6 12 0.00026 37.4 5.3 41 3-45 2-42 (275)
225 PF02572 CobA_CobO_BtuR: ATP:c 64.6 5.8 0.00012 38.1 2.9 29 11-39 9-39 (172)
226 PRK00771 signal recognition pa 64.3 11 0.00024 41.1 5.4 39 2-42 96-134 (437)
227 PRK04539 ppnK inorganic polyph 63.8 16 0.00034 38.0 6.1 91 299-401 7-102 (296)
228 PF00142 Fer4_NifH: 4Fe-4S iro 62.9 9.2 0.0002 39.4 4.1 32 12-43 9-40 (273)
229 TIGR02016 BchX chlorophyllide 62.6 13 0.00029 38.2 5.3 41 2-44 1-41 (296)
230 PRK06731 flhF flagellar biosyn 62.3 1.8E+02 0.0039 29.8 13.3 142 3-217 77-219 (270)
231 TIGR01281 DPOR_bchL light-inde 61.9 15 0.00033 36.4 5.5 35 11-45 8-42 (268)
232 PRK06696 uridine kinase; Valid 61.3 18 0.00039 35.2 5.8 41 3-45 24-64 (223)
233 PF06283 ThuA: Trehalose utili 60.5 17 0.00037 35.2 5.4 43 358-400 48-90 (217)
234 PRK07414 cob(I)yrinic acid a,c 60.2 8 0.00017 37.4 3.0 28 12-39 28-57 (178)
235 PRK14076 pnk inorganic polypho 60.1 23 0.00049 40.0 7.0 93 295-401 288-382 (569)
236 PRK01184 hypothetical protein; 59.3 12 0.00025 35.0 3.9 28 1-34 1-28 (184)
237 COG3155 ElbB Uncharacterized p 58.9 12 0.00025 36.1 3.7 52 361-412 84-149 (217)
238 COG1192 Soj ATPases involved i 58.3 16 0.00035 36.0 4.9 36 9-44 9-45 (259)
239 cd06300 PBP1_ABC_sugar_binding 58.1 67 0.0014 31.0 9.1 33 361-397 59-91 (272)
240 PRK14077 pnk inorganic polypho 58.0 19 0.00041 37.2 5.5 86 299-401 12-98 (287)
241 PRK02649 ppnK inorganic polyph 57.4 21 0.00045 37.3 5.7 35 361-400 67-101 (305)
242 COG0521 MoaB Molybdopterin bio 56.6 49 0.0011 31.9 7.6 73 89-173 27-115 (169)
243 PRK14489 putative bifunctional 56.4 20 0.00043 38.0 5.5 40 1-42 205-244 (366)
244 PF00485 PRK: Phosphoribulokin 56.2 14 0.0003 35.0 3.9 38 4-43 2-43 (194)
245 PF13614 AAA_31: AAA domain; P 55.6 26 0.00057 31.3 5.5 40 2-42 1-40 (157)
246 COG4090 Uncharacterized protei 54.9 17 0.00037 33.8 4.0 42 358-399 81-124 (154)
247 PRK03378 ppnK inorganic polyph 54.5 26 0.00057 36.2 5.8 89 299-401 7-97 (292)
248 PF00448 SRP54: SRP54-type pro 54.0 26 0.00057 33.8 5.5 40 2-43 2-41 (196)
249 PRK13886 conjugal transfer pro 52.5 25 0.00054 35.5 5.2 39 4-42 4-42 (241)
250 cd03110 Fer4_NifH_child This p 52.1 1.1E+02 0.0025 28.1 9.3 29 11-43 8-36 (179)
251 PRK06179 short chain dehydroge 51.6 17 0.00037 35.4 3.9 34 2-41 5-38 (270)
252 PRK14495 putative molybdopteri 51.2 24 0.00051 38.9 5.1 39 1-41 1-39 (452)
253 TIGR01133 murG undecaprenyldip 51.0 23 0.0005 35.7 4.8 34 1-38 1-35 (348)
254 TIGR00041 DTMP_kinase thymidyl 50.9 29 0.00064 32.4 5.2 34 2-37 4-37 (195)
255 COG3340 PepE Peptidase E [Amin 50.8 16 0.00035 36.5 3.4 91 297-404 32-131 (224)
256 PRK03708 ppnK inorganic polyph 50.7 27 0.00059 35.8 5.2 87 298-401 1-90 (277)
257 PRK15453 phosphoribulokinase; 50.6 21 0.00046 37.1 4.4 47 2-50 6-52 (290)
258 PF01583 APS_kinase: Adenylyls 50.3 26 0.00056 33.1 4.6 36 3-40 4-39 (156)
259 PRK02006 murD UDP-N-acetylmura 50.3 25 0.00055 38.5 5.2 31 2-36 122-152 (498)
260 COG1703 ArgK Putative periplas 49.4 21 0.00045 37.6 4.1 94 4-147 54-151 (323)
261 PRK04885 ppnK inorganic polyph 49.3 32 0.00069 35.1 5.5 35 362-401 35-71 (265)
262 TIGR01012 Sa_S2_E_A ribosomal 49.3 65 0.0014 31.7 7.3 76 299-398 63-138 (196)
263 PHA02519 plasmid partition pro 49.2 18 0.00039 38.8 3.8 34 13-46 117-151 (387)
264 PRK06953 short chain dehydroge 49.1 23 0.0005 33.6 4.2 34 1-40 1-34 (222)
265 cd02038 FleN-like FleN is a me 49.1 37 0.0008 30.5 5.3 38 4-42 2-39 (139)
266 PF03205 MobB: Molybdopterin g 49.0 31 0.00068 31.5 4.9 37 2-40 1-37 (140)
267 PRK12723 flagellar biosynthesi 48.8 29 0.00062 37.5 5.2 39 2-42 175-217 (388)
268 PRK05693 short chain dehydroge 48.5 20 0.00043 35.2 3.8 32 1-38 1-32 (274)
269 COG1348 NifH Nitrogenase subun 48.2 17 0.00036 37.2 3.1 30 13-42 11-40 (278)
270 PRK14075 pnk inorganic polypho 48.1 39 0.00085 34.2 5.8 72 298-401 1-72 (256)
271 PRK07102 short chain dehydroge 48.0 20 0.00043 34.4 3.6 35 1-41 1-35 (243)
272 COG2109 BtuR ATP:corrinoid ade 48.0 17 0.00037 35.7 3.1 29 10-38 33-63 (198)
273 PF02424 ApbE: ApbE family; I 47.8 15 0.00032 37.0 2.7 90 11-112 110-213 (254)
274 PLN02727 NAD kinase 47.6 35 0.00075 40.8 6.0 95 298-401 679-777 (986)
275 TIGR03029 EpsG chain length de 46.8 33 0.00071 34.2 5.0 40 2-42 104-143 (274)
276 COG0771 MurD UDP-N-acetylmuram 46.6 82 0.0018 34.8 8.4 29 298-330 8-36 (448)
277 PF14403 CP_ATPgrasp_2: Circul 46.1 1.3E+02 0.0028 33.2 9.8 157 208-400 101-277 (445)
278 PRK00421 murC UDP-N-acetylmura 45.7 57 0.0012 35.3 7.0 29 298-330 8-37 (461)
279 PRK07890 short chain dehydroge 45.7 26 0.00055 33.8 4.0 32 2-39 6-37 (258)
280 TIGR03815 CpaE_hom_Actino heli 45.5 41 0.00089 34.5 5.7 42 2-44 94-135 (322)
281 PRK06940 short chain dehydroge 45.1 30 0.00066 34.3 4.5 31 2-40 3-33 (275)
282 PRK06101 short chain dehydroge 44.4 25 0.00055 33.8 3.7 33 1-39 1-33 (240)
283 PRK06924 short chain dehydroge 44.2 36 0.00077 32.7 4.7 31 1-37 1-31 (251)
284 PRK05854 short chain dehydroge 43.9 24 0.00052 36.0 3.6 30 2-37 15-44 (313)
285 PF09140 MipZ: ATPase MipZ; I 43.9 34 0.00073 35.1 4.6 40 3-42 1-40 (261)
286 PRK05439 pantothenate kinase; 43.7 38 0.00083 35.5 5.1 42 3-46 88-131 (311)
287 PRK07933 thymidylate kinase; V 43.2 45 0.00097 32.5 5.2 37 2-40 1-37 (213)
288 COG0529 CysC Adenylylsulfate k 43.1 39 0.00084 33.2 4.6 33 3-37 25-57 (197)
289 PRK01231 ppnK inorganic polyph 43.1 47 0.001 34.4 5.6 89 299-401 6-96 (295)
290 PRK08177 short chain dehydroge 43.1 38 0.00081 32.2 4.6 34 1-40 1-34 (225)
291 PRK06851 hypothetical protein; 43.0 40 0.00087 36.1 5.2 38 2-41 31-70 (367)
292 PRK06947 glucose-1-dehydrogena 43.0 30 0.00064 33.2 3.9 30 1-36 2-31 (248)
293 COG4977 Transcriptional regula 42.9 32 0.0007 36.4 4.4 46 360-405 74-122 (328)
294 COG1763 MobB Molybdopterin-gua 42.8 67 0.0014 30.5 6.1 55 1-57 2-57 (161)
295 PRK04296 thymidine kinase; Pro 42.7 58 0.0012 31.0 5.8 38 2-45 3-42 (190)
296 PRK03846 adenylylsulfate kinas 42.2 41 0.00089 32.0 4.7 40 2-43 25-64 (198)
297 PTZ00254 40S ribosomal protein 42.0 1.1E+02 0.0024 31.2 7.9 76 299-398 73-148 (249)
298 PRK12742 oxidoreductase; Provi 41.9 30 0.00066 32.8 3.8 29 2-36 7-35 (237)
299 KOG1252 Cystathionine beta-syn 41.9 16 0.00034 38.9 1.9 43 10-52 216-260 (362)
300 cd03794 GT1_wbuB_like This fam 41.8 3.4E+02 0.0073 26.4 17.3 42 2-43 1-43 (394)
301 PRK06398 aldose dehydrogenase; 41.3 29 0.00063 33.9 3.7 30 2-37 7-36 (258)
302 PRK08727 hypothetical protein; 41.0 20 0.00042 35.4 2.4 59 3-63 43-101 (233)
303 cd06305 PBP1_methylthioribose_ 40.9 2.1E+02 0.0045 27.4 9.5 33 361-397 54-86 (273)
304 TIGR02667 moaB_proteo molybden 40.8 2.7E+02 0.0057 26.2 9.9 68 313-393 24-94 (163)
305 cd01836 FeeA_FeeB_like SGNH_hy 40.7 60 0.0013 30.0 5.5 59 119-184 54-116 (191)
306 PRK01710 murD UDP-N-acetylmura 40.6 90 0.0019 33.8 7.6 28 299-330 16-43 (458)
307 PRK12748 3-ketoacyl-(acyl-carr 40.6 33 0.00072 33.2 3.9 33 2-39 6-39 (256)
308 cd02023 UMPK Uridine monophosp 40.5 45 0.00098 31.4 4.7 38 3-44 1-38 (198)
309 PRK08303 short chain dehydroge 40.3 29 0.00063 35.4 3.6 30 2-37 9-38 (305)
310 KOG4180 Predicted kinase [Gene 40.2 34 0.00074 36.3 4.0 60 312-397 76-135 (395)
311 PRK12481 2-deoxy-D-gluconate 3 40.1 30 0.00065 33.7 3.5 30 2-37 9-38 (251)
312 COG4126 Hydantoin racemase [Am 39.9 30 0.00066 34.7 3.5 45 361-412 68-112 (230)
313 PLN02422 dephospho-CoA kinase 39.8 37 0.0008 34.0 4.1 28 1-34 1-28 (232)
314 PRK12828 short chain dehydroge 39.7 38 0.00083 31.8 4.1 34 2-41 8-41 (239)
315 PRK07035 short chain dehydroge 39.4 33 0.00072 33.0 3.7 30 2-37 9-38 (252)
316 PRK14528 adenylate kinase; Pro 39.4 36 0.00079 32.2 3.9 25 1-27 1-25 (186)
317 PRK03333 coaE dephospho-CoA ki 39.3 35 0.00077 36.6 4.2 28 1-34 1-28 (395)
318 PF08245 Mur_ligase_M: Mur lig 39.3 81 0.0018 29.2 6.2 26 13-38 4-29 (188)
319 PRK12829 short chain dehydroge 39.1 37 0.0008 32.7 3.9 33 2-40 12-44 (264)
320 PRK05480 uridine/cytidine kina 38.9 57 0.0012 31.1 5.2 38 2-43 7-44 (209)
321 PRK04761 ppnK inorganic polyph 38.7 23 0.0005 35.9 2.5 37 360-401 23-59 (246)
322 PRK09072 short chain dehydroge 38.6 35 0.00077 33.2 3.8 33 2-40 6-38 (263)
323 PRK11519 tyrosine kinase; Prov 38.3 52 0.0011 38.1 5.6 40 2-42 527-566 (719)
324 TIGR03453 partition_RepA plasm 38.0 46 0.001 35.3 4.8 36 9-44 111-146 (387)
325 COG0426 FpaA Uncharacterized f 37.8 2E+02 0.0044 31.3 9.5 141 158-339 232-373 (388)
326 COG1214 Inactive homolog of me 37.5 39 0.00085 33.4 3.9 39 361-399 57-97 (220)
327 PRK01368 murD UDP-N-acetylmura 37.4 1.1E+02 0.0023 33.5 7.5 81 293-396 2-92 (454)
328 PRK04020 rps2P 30S ribosomal p 37.4 1.3E+02 0.0027 29.9 7.3 76 299-398 69-144 (204)
329 PRK04690 murD UDP-N-acetylmura 37.2 77 0.0017 34.6 6.4 28 299-330 10-37 (468)
330 cd03111 CpaE_like This protein 37.0 46 0.001 28.6 3.8 33 11-43 8-41 (106)
331 PRK08703 short chain dehydroge 37.0 41 0.00089 32.1 3.9 30 2-37 7-36 (239)
332 TIGR00455 apsK adenylylsulfate 36.8 62 0.0014 30.1 5.0 35 2-38 19-53 (184)
333 PRK08416 7-alpha-hydroxysteroi 36.8 37 0.00079 33.1 3.5 29 2-36 9-37 (260)
334 TIGR00073 hypB hydrogenase acc 36.7 81 0.0017 30.2 5.8 52 14-67 31-84 (207)
335 cd05014 SIS_Kpsf KpsF-like pro 36.7 1.7E+02 0.0036 25.3 7.4 38 360-399 45-82 (128)
336 PLN02989 cinnamyl-alcohol dehy 36.7 53 0.0012 33.1 4.8 34 2-41 6-39 (325)
337 PRK00698 tmk thymidylate kinas 36.6 65 0.0014 30.1 5.1 34 2-37 4-37 (205)
338 PRK13973 thymidylate kinase; P 36.6 71 0.0015 30.9 5.5 35 2-38 4-38 (213)
339 PF12846 AAA_10: AAA-like doma 36.5 57 0.0012 31.9 4.9 35 3-41 3-37 (304)
340 TIGR03325 BphB_TodD cis-2,3-di 36.5 40 0.00087 32.8 3.8 30 2-37 6-35 (262)
341 PRK00561 ppnK inorganic polyph 36.4 26 0.00057 35.7 2.5 36 361-401 32-67 (259)
342 PRK05786 fabG 3-ketoacyl-(acyl 36.4 41 0.0009 31.9 3.8 29 2-36 6-34 (238)
343 PRK03369 murD UDP-N-acetylmura 36.3 1.4E+02 0.003 32.8 8.3 27 299-329 14-40 (488)
344 PRK05579 bifunctional phosphop 36.2 44 0.00096 36.1 4.3 37 2-38 189-235 (399)
345 PRK08339 short chain dehydroge 36.1 40 0.00088 33.1 3.8 30 2-37 9-38 (263)
346 PRK01390 murD UDP-N-acetylmura 36.1 69 0.0015 34.5 5.8 62 2-73 115-178 (460)
347 PRK13705 plasmid-partitioning 36.0 38 0.00083 36.3 3.8 34 12-45 116-150 (388)
348 COG1897 MetA Homoserine trans- 36.0 2.2E+02 0.0047 29.6 8.8 111 296-411 34-156 (307)
349 PRK05876 short chain dehydroge 35.8 42 0.0009 33.4 3.8 30 2-37 7-36 (275)
350 COG0489 Mrp ATPases involved i 35.7 60 0.0013 33.0 5.0 162 2-217 58-227 (265)
351 PLN02913 dihydrofolate synthet 35.7 26 0.00056 39.0 2.5 32 2-37 76-107 (510)
352 PF09822 ABC_transp_aux: ABC-t 35.7 2.1E+02 0.0045 28.6 8.9 73 296-393 145-227 (271)
353 PRK06197 short chain dehydroge 35.7 39 0.00084 34.0 3.6 30 2-37 17-46 (306)
354 PRK08690 enoyl-(acyl carrier p 35.7 42 0.0009 33.0 3.8 30 2-36 7-37 (261)
355 TIGR01500 sepiapter_red sepiap 35.7 47 0.001 32.3 4.1 34 3-38 2-35 (256)
356 PRK09620 hypothetical protein; 35.6 51 0.0011 32.8 4.3 36 2-37 4-49 (229)
357 PRK12727 flagellar biosynthesi 35.5 55 0.0012 37.1 5.0 39 2-42 351-391 (559)
358 PRK05993 short chain dehydroge 35.1 42 0.00091 33.2 3.7 33 2-40 5-37 (277)
359 PRK06505 enoyl-(acyl carrier p 34.9 46 0.00099 33.1 4.0 31 2-37 8-39 (271)
360 PRK07024 short chain dehydroge 34.8 42 0.00091 32.6 3.6 33 1-39 2-34 (257)
361 PRK05717 oxidoreductase; Valid 34.4 44 0.00095 32.4 3.6 30 2-37 11-40 (255)
362 PF10087 DUF2325: Uncharacteri 34.0 2.1E+02 0.0045 24.2 7.3 78 299-395 1-79 (97)
363 PRK05866 short chain dehydroge 33.8 42 0.0009 33.8 3.5 30 2-37 41-70 (293)
364 cd02019 NK Nucleoside/nucleoti 33.8 80 0.0017 25.0 4.5 31 4-38 2-32 (69)
365 PF13450 NAD_binding_8: NAD(P) 33.7 58 0.0013 26.0 3.6 38 14-54 2-39 (68)
366 PRK00889 adenylylsulfate kinas 33.6 83 0.0018 29.0 5.2 38 2-41 5-42 (175)
367 PRK06463 fabG 3-ketoacyl-(acyl 33.2 50 0.0011 31.9 3.8 29 2-36 8-36 (255)
368 COG3640 CooC CO dehydrogenase 33.2 51 0.0011 33.6 3.9 36 4-41 3-39 (255)
369 PRK07831 short chain dehydroge 33.1 54 0.0012 31.9 4.1 31 2-37 18-48 (262)
370 PF01513 NAD_kinase: ATP-NAD k 32.8 31 0.00066 35.2 2.3 37 360-401 74-110 (285)
371 PRK08340 glucose-1-dehydrogena 32.8 44 0.00096 32.4 3.4 29 3-37 2-30 (259)
372 cd06320 PBP1_allose_binding Pe 32.7 2.2E+02 0.0048 27.4 8.3 33 361-397 56-88 (275)
373 PRK06523 short chain dehydroge 32.3 60 0.0013 31.3 4.2 33 2-40 10-42 (260)
374 PRK05642 DNA replication initi 32.3 33 0.00071 33.9 2.4 60 3-64 47-106 (234)
375 PRK01185 ppnK inorganic polyph 32.2 1.1E+02 0.0024 31.3 6.3 31 362-400 52-82 (271)
376 cd00885 cinA Competence-damage 32.1 1.9E+02 0.004 27.4 7.4 84 312-410 20-104 (170)
377 cd01391 Periplasmic_Binding_Pr 32.0 2.2E+02 0.0048 26.0 7.8 32 361-397 57-88 (269)
378 COG0451 WcaG Nucleoside-diphos 32.0 57 0.0012 32.1 4.1 32 4-41 3-34 (314)
379 PRK05986 cob(I)alamin adenolsy 31.9 48 0.001 32.4 3.4 28 13-40 30-59 (191)
380 TIGR01499 folC folylpolyglutam 31.8 62 0.0013 34.2 4.5 32 2-37 19-50 (397)
381 PRK10310 PTS system galactitol 31.7 93 0.002 26.6 4.8 38 2-42 4-42 (94)
382 PRK12859 3-ketoacyl-(acyl-carr 31.4 58 0.0013 31.7 4.0 31 2-37 7-38 (256)
383 COG0061 nadF NAD kinase [Coenz 31.4 80 0.0017 32.3 5.1 35 361-400 54-88 (281)
384 PTZ00451 dephospho-CoA kinase; 31.3 59 0.0013 32.8 4.0 28 1-34 1-29 (244)
385 PF08497 Radical_SAM_N: Radica 31.2 40 0.00087 35.2 2.8 32 3-38 19-53 (302)
386 TIGR01360 aden_kin_iso1 adenyl 31.2 62 0.0013 29.7 3.9 25 1-27 3-27 (188)
387 PF01408 GFO_IDH_MocA: Oxidore 31.2 55 0.0012 27.9 3.4 38 353-395 51-90 (120)
388 PRK07063 short chain dehydroge 31.0 57 0.0012 31.6 3.9 30 2-37 8-37 (260)
389 PF01695 IstB_IS21: IstB-like 31.0 65 0.0014 30.6 4.1 39 3-43 49-87 (178)
390 PRK07806 short chain dehydroge 30.9 60 0.0013 31.0 3.9 29 2-36 7-35 (248)
391 PRK07814 short chain dehydroge 30.9 56 0.0012 31.9 3.8 34 2-41 11-44 (263)
392 PRK00081 coaE dephospho-CoA ki 30.7 68 0.0015 30.6 4.2 28 1-34 2-29 (194)
393 PRK06182 short chain dehydroge 30.7 59 0.0013 31.9 3.9 31 2-38 4-34 (273)
394 PF03668 ATP_bind_2: P-loop AT 30.7 56 0.0012 34.0 3.8 28 1-34 1-28 (284)
395 PRK06603 enoyl-(acyl carrier p 30.7 57 0.0012 32.0 3.8 30 2-36 9-39 (260)
396 PRK07985 oxidoreductase; Provi 30.4 59 0.0013 32.7 3.9 30 2-37 50-79 (294)
397 TIGR01305 GMP_reduct_1 guanosi 30.0 2E+02 0.0044 30.7 7.8 53 361-413 170-238 (343)
398 PRK08309 short chain dehydroge 30.0 85 0.0018 29.8 4.7 27 4-37 3-29 (177)
399 PLN00198 anthocyanidin reducta 29.9 83 0.0018 32.0 5.0 34 2-41 10-43 (338)
400 cd01826 acyloxyacyl_hydrolase_ 29.9 1.3E+02 0.0029 31.6 6.4 73 89-173 75-169 (305)
401 PRK09242 tropinone reductase; 29.8 58 0.0013 31.5 3.6 30 2-37 10-39 (257)
402 PRK09186 flagellin modificatio 29.8 63 0.0014 31.0 3.9 31 2-38 5-35 (256)
403 PRK06761 hypothetical protein; 29.7 59 0.0013 33.6 3.8 33 2-36 4-36 (282)
404 PRK06720 hypothetical protein; 29.7 61 0.0013 30.4 3.7 30 2-37 17-46 (169)
405 PF03308 ArgK: ArgK protein; 29.7 64 0.0014 33.3 4.0 53 4-78 32-84 (266)
406 cd05013 SIS_RpiR RpiR-like pro 29.7 3.5E+02 0.0076 23.0 10.6 37 360-398 58-94 (139)
407 COG0521 MoaB Molybdopterin bio 29.7 51 0.0011 31.7 3.1 71 314-396 30-101 (169)
408 COG0300 DltE Short-chain dehyd 29.3 61 0.0013 33.3 3.8 32 1-38 6-37 (265)
409 smart00852 MoCF_biosynth Proba 29.3 1.7E+02 0.0037 26.1 6.3 70 313-395 20-90 (135)
410 PRK05599 hypothetical protein; 29.2 50 0.0011 32.1 3.1 29 2-37 1-29 (246)
411 smart00864 Tubulin Tubulin/Fts 29.2 1.1E+02 0.0023 29.3 5.3 106 101-223 52-157 (192)
412 PF13670 PepSY_2: Peptidase pr 29.0 65 0.0014 26.6 3.3 45 16-71 27-72 (83)
413 PRK06732 phosphopantothenate-- 28.9 77 0.0017 31.4 4.4 35 4-38 3-47 (229)
414 PLN02780 ketoreductase/ oxidor 28.9 53 0.0011 33.8 3.3 32 2-39 54-85 (320)
415 PRK08267 short chain dehydroge 28.8 82 0.0018 30.5 4.5 31 1-37 1-31 (260)
416 PRK08993 2-deoxy-D-gluconate 3 28.8 61 0.0013 31.4 3.6 30 2-37 11-40 (253)
417 PRK07677 short chain dehydroge 28.7 68 0.0015 31.0 3.9 32 2-39 2-33 (252)
418 PRK08278 short chain dehydroge 28.5 61 0.0013 32.0 3.6 30 2-37 7-36 (273)
419 PRK03501 ppnK inorganic polyph 28.5 1.2E+02 0.0025 31.2 5.6 34 362-400 39-74 (264)
420 PRK06200 2,3-dihydroxy-2,3-dih 28.4 64 0.0014 31.4 3.7 31 2-38 7-37 (263)
421 COG5182 CUS1 Splicing factor 3 28.3 50 0.0011 35.1 2.9 77 181-265 114-210 (429)
422 PHA02754 hypothetical protein; 28.3 51 0.0011 26.6 2.3 28 158-186 15-42 (67)
423 COG0052 RpsB Ribosomal protein 28.1 3.3E+02 0.007 28.0 8.6 20 379-398 167-186 (252)
424 TIGR00521 coaBC_dfp phosphopan 27.9 74 0.0016 34.3 4.3 37 2-38 186-232 (390)
425 PRK06057 short chain dehydroge 27.8 68 0.0015 31.0 3.8 30 2-37 8-37 (255)
426 PRK06125 short chain dehydroge 27.8 69 0.0015 31.0 3.8 32 2-39 8-39 (259)
427 PF03698 UPF0180: Uncharacteri 27.7 86 0.0019 26.6 3.8 41 299-370 3-43 (80)
428 cd06267 PBP1_LacI_sugar_bindin 27.7 2.5E+02 0.0054 26.2 7.5 31 361-397 54-84 (264)
429 PRK07413 hypothetical protein; 27.6 52 0.0011 35.5 3.1 30 10-39 24-61 (382)
430 PRK09730 putative NAD(P)-bindi 27.6 85 0.0018 29.8 4.3 30 1-36 1-30 (247)
431 PRK12825 fabG 3-ketoacyl-(acyl 27.5 87 0.0019 29.4 4.3 30 1-36 6-35 (249)
432 cd06309 PBP1_YtfQ_like Peripla 27.5 3.2E+02 0.0068 26.3 8.4 33 361-397 54-86 (273)
433 PRK07023 short chain dehydroge 27.4 84 0.0018 30.0 4.3 32 1-38 1-32 (243)
434 PRK13302 putative L-aspartate 27.3 1.4E+02 0.003 30.3 6.0 91 297-400 6-100 (271)
435 TIGR03575 selen_PSTK_euk L-ser 27.3 89 0.0019 33.2 4.7 39 4-44 2-41 (340)
436 COG4242 CphB Cyanophycinase an 27.2 1.4E+02 0.0031 30.8 5.9 77 317-405 73-154 (293)
437 PRK10846 bifunctional folylpol 27.1 76 0.0016 34.0 4.2 32 2-37 50-81 (416)
438 PRK09271 flavodoxin; Provision 27.0 1.9E+02 0.0041 26.7 6.4 42 359-400 48-94 (160)
439 COG1834 N-Dimethylarginine dim 27.0 96 0.0021 32.0 4.7 92 64-171 51-152 (267)
440 PRK12743 oxidoreductase; Provi 27.0 74 0.0016 30.8 3.9 30 1-36 2-31 (256)
441 PRK06997 enoyl-(acyl carrier p 27.0 75 0.0016 31.2 3.9 30 2-36 7-37 (260)
442 COG1660 Predicted P-loop-conta 27.0 53 0.0011 34.0 2.8 23 151-173 57-79 (286)
443 PRK07453 protochlorophyllide o 26.9 68 0.0015 32.5 3.7 30 2-37 7-36 (322)
444 PRK07478 short chain dehydroge 26.9 73 0.0016 30.7 3.7 30 2-37 7-36 (254)
445 COG2403 Predicted GTPase [Gene 26.8 65 0.0014 35.0 3.5 31 9-39 133-163 (449)
446 PRK06128 oxidoreductase; Provi 26.4 80 0.0017 31.7 4.1 30 2-37 56-85 (300)
447 TIGR01472 gmd GDP-mannose 4,6- 26.3 82 0.0018 32.2 4.2 31 2-38 1-31 (343)
448 PF03437 BtpA: BtpA family; I 26.3 3.7E+02 0.008 27.5 8.7 74 314-395 128-204 (254)
449 cd01832 SGNH_hydrolase_like_1 26.3 1.4E+02 0.003 27.2 5.3 46 138-185 66-116 (185)
450 PLN02686 cinnamoyl-CoA reducta 26.2 95 0.0021 32.5 4.7 31 1-37 53-83 (367)
451 PRK07062 short chain dehydroge 26.2 78 0.0017 30.7 3.8 33 2-40 9-41 (265)
452 COG0540 PyrB Aspartate carbamo 26.1 3.4E+02 0.0074 28.8 8.6 105 192-330 86-190 (316)
453 PRK02231 ppnK inorganic polyph 26.1 55 0.0012 33.6 2.8 35 361-400 41-75 (272)
454 PF01266 DAO: FAD dependent ox 26.1 60 0.0013 32.3 3.1 29 14-42 5-33 (358)
455 TIGR01419 nitro_reg_IIA PTS II 25.9 26 0.00056 31.5 0.4 31 90-121 39-70 (145)
456 TIGR00235 udk uridine kinase. 25.9 90 0.0019 29.8 4.1 39 2-44 7-45 (207)
457 PRK10461 thiamine biosynthesis 25.9 55 0.0012 34.7 2.8 79 11-101 183-276 (350)
458 cd01451 vWA_Magnesium_chelatas 25.8 1.1E+02 0.0023 28.5 4.5 59 365-423 102-172 (178)
459 TIGR01289 LPOR light-dependent 25.7 73 0.0016 32.4 3.7 29 2-36 4-33 (314)
460 PRK09417 mogA molybdenum cofac 25.7 1.5E+02 0.0032 29.0 5.6 52 90-151 24-77 (193)
461 cd06301 PBP1_rhizopine_binding 25.7 4.7E+02 0.01 25.0 9.2 33 361-397 55-87 (272)
462 PF13407 Peripla_BP_4: Peripla 25.7 2.9E+02 0.0062 26.3 7.6 34 361-398 54-87 (257)
463 cd01537 PBP1_Repressors_Sugar_ 25.6 3.5E+02 0.0076 25.1 8.1 31 362-397 55-85 (264)
464 TIGR01963 PHB_DH 3-hydroxybuty 25.5 95 0.0021 29.6 4.2 32 1-38 1-32 (255)
465 PLN02166 dTDP-glucose 4,6-dehy 25.5 91 0.002 33.8 4.5 29 4-38 123-151 (436)
466 PRK08594 enoyl-(acyl carrier p 25.5 85 0.0018 30.8 4.0 31 2-37 8-39 (257)
467 PLN02986 cinnamyl-alcohol dehy 25.5 93 0.002 31.3 4.4 30 2-37 6-35 (322)
468 PRK06550 fabG 3-ketoacyl-(acyl 25.4 90 0.0019 29.6 4.0 32 2-39 6-37 (235)
469 PLN02778 3,5-epimerase/4-reduc 25.3 97 0.0021 31.4 4.5 28 3-36 11-38 (298)
470 cd01120 RecA-like_NTPases RecA 25.2 1.4E+02 0.003 26.0 4.9 38 4-43 2-39 (165)
471 PRK06196 oxidoreductase; Provi 25.2 78 0.0017 32.0 3.7 31 2-38 27-57 (315)
472 PRK12747 short chain dehydroge 25.2 79 0.0017 30.4 3.7 29 2-36 5-33 (252)
473 PRK02496 adk adenylate kinase; 25.1 84 0.0018 29.2 3.7 25 1-27 1-25 (184)
474 COG0391 Uncharacterized conser 25.0 1E+02 0.0022 32.7 4.5 42 354-398 181-228 (323)
475 PRK14491 putative bifunctional 24.9 1.1E+02 0.0024 34.9 5.2 39 1-41 10-48 (597)
476 PRK06217 hypothetical protein; 24.9 75 0.0016 29.8 3.3 25 1-27 1-25 (183)
477 PRK08862 short chain dehydroge 24.8 84 0.0018 30.5 3.7 30 2-37 6-35 (227)
478 PRK10675 UDP-galactose-4-epime 24.7 1E+02 0.0022 31.2 4.4 30 1-37 1-30 (338)
479 PF13472 Lipase_GDSL_2: GDSL-l 24.7 1.3E+02 0.0028 26.3 4.6 90 90-190 15-117 (179)
480 TIGR03574 selen_PSTK L-seryl-t 24.7 1E+02 0.0023 30.3 4.4 34 4-39 2-35 (249)
481 PRK06938 diaminobutyrate--2-ox 24.6 3.3E+02 0.0072 29.8 8.7 63 140-216 232-298 (464)
482 cd01536 PBP1_ABC_sugar_binding 24.6 4.7E+02 0.01 24.5 8.8 33 361-397 54-86 (267)
483 PRK07454 short chain dehydroge 24.6 1.1E+02 0.0023 29.2 4.4 33 1-39 6-38 (241)
484 PRK08589 short chain dehydroge 24.6 82 0.0018 31.0 3.7 30 2-37 7-36 (272)
485 PRK14734 coaE dephospho-CoA ki 24.6 1E+02 0.0022 29.7 4.2 28 1-34 1-28 (200)
486 PRK06171 sorbitol-6-phosphate 24.5 1.1E+02 0.0023 29.8 4.4 33 2-40 10-42 (266)
487 cd06282 PBP1_GntR_like_2 Ligan 24.4 4.2E+02 0.0091 25.0 8.5 32 361-397 54-85 (266)
488 PRK15181 Vi polysaccharide bio 24.4 1.1E+02 0.0023 31.6 4.7 31 2-38 16-46 (348)
489 PF01121 CoaE: Dephospho-CoA k 24.4 79 0.0017 30.2 3.4 27 3-35 2-28 (180)
490 PRK08415 enoyl-(acyl carrier p 24.3 93 0.002 31.1 4.1 31 2-37 6-37 (274)
491 PRK06300 enoyl-(acyl carrier p 24.3 81 0.0017 32.4 3.7 31 2-37 9-40 (299)
492 PRK06935 2-deoxy-D-gluconate 3 24.3 81 0.0018 30.5 3.6 30 2-37 16-45 (258)
493 PRK11259 solA N-methyltryptoph 24.3 63 0.0014 33.1 2.9 27 15-41 10-36 (376)
494 cd05005 SIS_PHI Hexulose-6-pho 24.1 5.8E+02 0.013 23.6 9.8 90 281-398 20-109 (179)
495 KOG0635 Adenosine 5'-phosphosu 24.1 80 0.0017 30.5 3.3 30 3-34 33-62 (207)
496 PLN02583 cinnamoyl-CoA reducta 24.0 1E+02 0.0022 31.0 4.3 30 2-37 7-36 (297)
497 PRK07577 short chain dehydroge 24.0 1.1E+02 0.0024 28.8 4.4 34 2-41 4-37 (234)
498 PRK02645 ppnK inorganic polyph 24.0 2E+02 0.0043 29.9 6.5 34 361-399 56-89 (305)
499 PRK09291 short chain dehydroge 24.0 1.1E+02 0.0024 29.3 4.4 30 2-37 3-32 (257)
500 PRK05565 fabG 3-ketoacyl-(acyl 23.9 1.1E+02 0.0024 28.9 4.3 31 1-37 5-35 (247)
No 1
>PLN02327 CTP synthase
Probab=100.00 E-value=2.8e-183 Score=1455.45 Aligned_cols=477 Identities=84% Similarity=1.322 Sum_probs=464.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||||||||||+|||||||+|||||+|||+|||+|++||||||||||||||||||||||||||||+||||||||||||||+
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHH
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ 160 (498)
+||++||+||||||++||+|||+|+|||||||||||||||||+||+++|++|||++..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiEs~pfl 160 (557)
T PLN02327 81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160 (557)
T ss_pred ccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeecccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 010866 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (498)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~ 240 (498)
||+||||+++|++|||||||||||||+++||+||||||||||+|||.|||||+|||||+.+++.+.|+||||||+|++++
T Consensus 161 EA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~v~~~~ 240 (557)
T PLN02327 161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240 (557)
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHHH
Q 010866 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (498)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~AL 320 (498)
||+++|++++|+||++|++||+++.|+++|+|+...+.+++.+|.++++++.+++++++||+||||.++.|||.||.+||
T Consensus 241 Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~Si~eAL 320 (557)
T PLN02327 241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320 (557)
T ss_pred EEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHHHHHHH
Confidence 99999999999999999999999999999999721245679999999999998888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 321 ~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
+|||+++.+++++.||+++++++.+...+|++|+.+|+.+.++|||++|||||+++.++++.++++++++++|+||||+|
T Consensus 321 ~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClG 400 (557)
T PLN02327 321 LHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400 (557)
T ss_pred HHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHH
Confidence 99999999999999999999987776678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCccCcCCcccccCcEeEEEe-eCchHHHHhhCCCeeEEecccc
Q 010866 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLFICGFNYVEIIIS 479 (498)
Q Consensus 401 mQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~~~~~G~tmrlG~~~v~i~-~g~S~l~~iYg~~~i~vnslh~ 479 (498)
||+|+++||||++||++|||+||++++++|++.+||+++...||||||||+|+|.+. +| |+++++||++. .||+.|+
T Consensus 401 mQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~-~VnerHr 478 (557)
T PLN02327 401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVS-FVDERHR 478 (557)
T ss_pred HHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCcc-ceeeeec
Confidence 999999999999999999999999999999999999988889999999999999998 88 99999999876 6999999
No 2
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-181 Score=1407.92 Aligned_cols=457 Identities=56% Similarity=0.905 Sum_probs=438.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||||||||||+|||||||+|||||+|||+|||+||++|||||||||||||||||||||||||||+||||||||||||+|+
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYERF~~~ 80 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDV 80 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHH
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ 160 (498)
+||++||+||||||++||+|||+|||||+|||||||||||||+||+++|+ .. +||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIEslpFl 153 (533)
T COG0504 81 NLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceecccccHHH
Confidence 99999999999999999999999999999999999999999999999995 22 999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 010866 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (498)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~ 240 (498)
||+||||.++|++|++|||+||||||+++||+||||||||||+|||+|||||++||||+.+++.+.|+||||||+|++++
T Consensus 154 EAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~V~~~~ 233 (533)
T COG0504 154 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHHH
Q 010866 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (498)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~AL 320 (498)
||+++|++++|++|+.|++||+++.++++|+|+ .+.+++++|+++++++.++.++++||+||||.++.|||.|+.+||
T Consensus 234 Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~Sv~EAL 311 (533)
T COG0504 234 VISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred eEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHHHHHHH
Confidence 999999999999999999999999999999997 367799999999999999888899999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc-CCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehH
Q 010866 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (498)
Q Consensus 321 ~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~-~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGICl 399 (498)
+|+|+...+++++.||++++++.++.. .+. .+|||++|||||.|+++|++.++++|||+++|+|||||
T Consensus 312 ~hag~~~~~~v~i~wIdse~le~~~~~-----------~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGICl 380 (533)
T COG0504 312 KHAGIALGVKVNIKWIDSEDLEEENAA-----------ELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICL 380 (533)
T ss_pred HhhhhhcCCceeeEEEccccccccchh-----------hhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEch
Confidence 999999999999999999999764421 222 29999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCc-cCcCCcccccCcEeEEEeeCchHHHHhhCCCeeEEeccc
Q 010866 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLFICGFNYVEIII 478 (498)
Q Consensus 400 GmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~-~~~~G~tmrlG~~~v~i~~g~S~l~~iYg~~~i~vnslh 478 (498)
|||++++||+||++||++|||+||++++++||+++|||+. ...+|+|||||+|+|.|++| |+++++||++.+.+--=|
T Consensus 381 GmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~~~~v~ERHRH 459 (533)
T COG0504 381 GMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYGKDEIYERHRH 459 (533)
T ss_pred hHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhCCCeeeeeccc
Confidence 9999999999999999999999999999999999999975 77799999999999999999 999999998776654444
No 3
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=1.8e-176 Score=1400.79 Aligned_cols=464 Identities=54% Similarity=0.887 Sum_probs=446.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||||||||||||||||||||||+||||||||||||||+
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~~ 81 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHH
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ 160 (498)
+|+|+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||||+||+
T Consensus 82 ~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDiEs~pf~ 153 (533)
T PRK05380 82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153 (533)
T ss_pred CCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccccccHHH
Confidence 9999999999999999999999999999999999999999999999998 37899999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 010866 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (498)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~ 240 (498)
||+||||+++|++|+|||||||||||+++||+||||||||||+|||.|||||+|+|||+.+++++.|+||||||+|+.++
T Consensus 154 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc~v~~~~ 233 (533)
T PRK05380 154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233 (533)
T ss_pred HHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHHH
Q 010866 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (498)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~AL 320 (498)
||+++|++|+|+||++|++||+++.++++|+|+. +.++++.|+++++++.++.++++||+||||.++.|||.|+.+||
T Consensus 234 vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~~--~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~Sv~eAL 311 (533)
T PRK05380 234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGLEA--PEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEAL 311 (533)
T ss_pred EEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCCC--CCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999973 56789999999999999888999999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 321 ~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
+|+|+++.+++++.||++++++.++ +++.+.++|||+||||||++..++.+.++++++++++|+||||+|
T Consensus 312 ~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 312 KHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 9999999999999999999886532 236789999999999999998889999999999999999999999
Q ss_pred HHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCc-cCcCCcccccCcEeEEEeeCchHHHHhhCCCee-------
Q 010866 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLFICGFN------- 472 (498)
Q Consensus 401 mQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~-~~~~G~tmrlG~~~v~i~~g~S~l~~iYg~~~i------- 472 (498)
||+|+++|||+++|++++||.||++++++|++.+|+++. ..++|+|||+|+|+|.|.+| |+++++||++.+
T Consensus 382 mQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg~~~i~ErhrHr 460 (533)
T PRK05380 382 MQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYGKEEIYERHRHR 460 (533)
T ss_pred HHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhCCCceeeecccc
Confidence 999999999999999999999999999999999998864 56899999999999999999 999999998855
Q ss_pred -EEecccccccccc
Q 010866 473 -YVEIIISKANMET 485 (498)
Q Consensus 473 -~vnslh~q~~~~~ 485 (498)
.||+.|.|++-+.
T Consensus 461 yeVNs~h~qal~~~ 474 (533)
T PRK05380 461 YEVNNKYREQLEKA 474 (533)
T ss_pred eecCHHHHHHHhhc
Confidence 5999999998554
No 4
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=4.3e-176 Score=1397.50 Aligned_cols=464 Identities=57% Similarity=0.902 Sum_probs=445.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||||||||||+|||||||+|||||+|||+|||+|++||||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~ 80 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchhhhcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHH
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ 160 (498)
+||++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+|||||||||||||||||+||+
T Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiEs~pf~ 154 (525)
T TIGR00337 81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIESLPFL 154 (525)
T ss_pred CCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCccccccccHHH
Confidence 99999999999999999999999999999999999999999999999984 468999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 010866 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (498)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~ 240 (498)
||+||||+++|++|||||||||||||+++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|+.++
T Consensus 155 ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~v~~~~ 234 (525)
T TIGR00337 155 EAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCDVEEEA 234 (525)
T ss_pred HHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHHH
Q 010866 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKAL 320 (498)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~AL 320 (498)
||+++|++++|+||++|++||+++.|+++|+|+. +.+++++|.++++++.+++++++||+||||.++.|+|.||.+||
T Consensus 235 vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~~--~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~SI~eAL 312 (525)
T TIGR00337 235 VINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLNC--DEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLSVIEAL 312 (525)
T ss_pred EEEcCCCccHhhhhHHHHHCChHHHHHHHhCCCC--CCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999973 45679999999999999888899999999999999999999999
Q ss_pred HHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 321 LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 321 ~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
.++|+++.+.+.+.|+++++++..+ .+.+.++|||+||||||+++.++.++++++++++++|+||||+|
T Consensus 313 ~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 313 KHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred HhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 9999999999999999998764321 13578899999999999998899999999999999999999999
Q ss_pred HHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCc-cCcCCcccccCcEeEEEeeCchHHHHhhCCCee-------
Q 010866 401 MQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLFICGFN------- 472 (498)
Q Consensus 401 mQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~-~~~~G~tmrlG~~~v~i~~g~S~l~~iYg~~~i------- 472 (498)
||+|+++|||+++||++|||+||++++++||+.+++++. .+++|||||||+|+|.+.+| |+++++||++.+
T Consensus 382 ~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG~~~i~erhrHr 460 (525)
T TIGR00337 382 MQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYGKEEVYERHRHR 460 (525)
T ss_pred HHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhCCCceeecccce
Confidence 999999999999999999999999999999999999875 68999999999999999999 999999998865
Q ss_pred -EEeccccccccc
Q 010866 473 -YVEIIISKANME 484 (498)
Q Consensus 473 -~vnslh~q~~~~ 484 (498)
.||+.|.|++-.
T Consensus 461 y~VNs~h~q~l~~ 473 (525)
T TIGR00337 461 YEVNNEYREQLEN 473 (525)
T ss_pred EEECHHHHHhhhh
Confidence 599999998654
No 5
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.1e-176 Score=1346.47 Aligned_cols=471 Identities=72% Similarity=1.147 Sum_probs=460.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||||+|||||+||+||||+|||+|.|||++|++||.||||||||+|||||||||||||||+|||+|+||||||||||||+
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYERfldi 80 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKSCGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYERFLDI 80 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHhcCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchhhhccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHH
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ 160 (498)
+||++|||||||||+.||+|||+||||||||||||||||+|++||+++|++|||+++..|||||||+|||||||||+||+
T Consensus 81 ~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiEs~pfv 160 (585)
T KOG2387|consen 81 TLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIESMPFV 160 (585)
T ss_pred eeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceeccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 010866 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (498)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~ 240 (498)
||+|||++++|++|||+|||+|||.+.+.|||||||||||||+||+.|+.||+++|||..++..++|+|||.||+|++++
T Consensus 161 eAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FChV~~eq 240 (585)
T KOG2387|consen 161 EALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCHVGPEQ 240 (585)
T ss_pred HHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCC-hhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHH
Q 010866 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKA 319 (498)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~-~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~A 319 (498)
|++++||+++|.+|+.|++||+.+++.++|+|+.... .+.+..|.++.++..+....++||+||||+.+.|+|.|+.+|
T Consensus 241 V~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~Sv~KA 320 (585)
T KOG2387|consen 241 VVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYLSVVKA 320 (585)
T ss_pred eeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHHHHHHH
Confidence 9999999999999999999999999999999975222 368999999999999888889999999999999999999999
Q ss_pred HHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehH
Q 010866 320 LLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (498)
Q Consensus 320 L~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGICl 399 (498)
|.|+++.+..+++|.||++.++|......+|.+|++||+.+..+|||++|||||+|+.+|++.|+++||++++|+|||||
T Consensus 321 L~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCL 400 (585)
T KOG2387|consen 321 LEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICL 400 (585)
T ss_pred HHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeeh
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCccCcCCcccccCcEeEEEeeCchHHHHhhCCCe
Q 010866 400 GMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLFICGF 471 (498)
Q Consensus 400 GmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~~~~~G~tmrlG~~~v~i~~g~S~l~~iYg~~~ 471 (498)
|||+.+++|+|++++|++|+|+||++++++|++.+|||.+..|||+|||||.+++.+.+++|+++++||..+
T Consensus 401 GmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~ 472 (585)
T KOG2387|consen 401 GMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVE 472 (585)
T ss_pred hhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCch
Confidence 999999999999999999999999999999999999999999999999999999999998899999999543
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=4.6e-141 Score=1039.67 Aligned_cols=276 Identities=65% Similarity=1.078 Sum_probs=236.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||+
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YERFl~~ 80 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYERFLDI 80 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHHHHHTS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHH
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFI 160 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ 160 (498)
+|+++||+||||||++||+|||+|+|||+|||||||||||||+||+++|+ ..+|||||||||||||||||+|||
T Consensus 81 ~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIEs~pFl 154 (276)
T PF06418_consen 81 NLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIESLPFL 154 (276)
T ss_dssp ---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCCCHHHH
T ss_pred CCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccccccHH
Confidence 99999999999999999999999999999999999999999999999995 458999999999999999999999
Q ss_pred HHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCC
Q 010866 161 EALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQN 240 (498)
Q Consensus 161 ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~ 240 (498)
||+||||+++|++|+||||||||||++++||+||||||||||+|||.|||||+|||||+.+++++.|+||||||+|++++
T Consensus 155 EAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~V~~e~ 234 (276)
T PF06418_consen 155 EAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCNVPPEN 234 (276)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCTS-GGG
T ss_pred HHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHH
Q 010866 241 IITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 284 (498)
Q Consensus 241 Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W 284 (498)
||+++|++++|+||++|++||+++.++++|+|+ .+.+++++|
T Consensus 235 VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 235 VISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp EEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred EEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 999999999999999999999999999999998 467799999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=2e-132 Score=971.91 Aligned_cols=255 Identities=62% Similarity=1.031 Sum_probs=252.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~ 81 (498)
|||||||||+|||||||+|||||+|||+|||+|+++|||||||+|||||||||||||||||||+||||||||||||||++
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~ 80 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTN 80 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHHH
Q 010866 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (498)
Q Consensus 82 l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~e 161 (498)
|+++||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..++||||||||||||||||+||+|
T Consensus 81 l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs~pf~E 154 (255)
T cd03113 81 LSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIESLPFLE 154 (255)
T ss_pred CcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999995 4689999999999999999999999
Q ss_pred HHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCe
Q 010866 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNI 241 (498)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~V 241 (498)
|+||||+++|++|+||||||||||++++||+|||||||||++||+.||+||+||||++.+++++.++|+|+||+|+.++|
T Consensus 155 Airq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnVpve~V 234 (255)
T cd03113 155 AIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDVPPEAV 234 (255)
T ss_pred HHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCccchhhHHHHHhhh
Q 010866 242 ITLYDVPNIWHIPLLLRDQKA 262 (498)
Q Consensus 242 i~i~dVdTrY~lpl~LreqG~ 262 (498)
+..+|++++|++|+.|++||+
T Consensus 235 I~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 235 ISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred eecCCCcchhhccHHHHhCcC
Confidence 999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=4e-40 Score=322.22 Aligned_cols=169 Identities=30% Similarity=0.388 Sum_probs=153.4
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~ 376 (498)
+++||+||||.++.|+|.||.+||+|+|+...+++++.||++++++++ +.|+++|||++|||||.|+
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 379999999999999999999999999999999999999999988642 2588999999999999999
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCccCcCCcccccCcEeEEE
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~~~~~G~tmrlG~~~v~i 456 (498)
++|++.++++||++++|+||||||||+++++|+|++++++++||.||++++++|++.+|+ ..... ..|+|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~-~~~~~-------~~h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLS-CSLVE-------KTGDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECc-ccccc-------CceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999987 22222 2489999
Q ss_pred eeCchHHHHhhCCCee--------EEecccccccccchh
Q 010866 457 QIKDCKSAKLFICGFN--------YVEIIISKANMETEL 487 (498)
Q Consensus 457 ~~g~S~l~~iYg~~~i--------~vnslh~q~~~~~~~ 487 (498)
++| |+++++||++.+ .|||.|.|++-..-|
T Consensus 140 ~~~-S~l~~iyg~~~i~erhrHryeVNs~h~q~i~~~GL 177 (229)
T PRK06186 140 RPG-SLIARAYGTLEIEEGYHCRYGVNPEFVAALESGDL 177 (229)
T ss_pred CCC-CHHHHHhCCCeeeeeccccEEECHHHHHHHhcCCe
Confidence 999 999999999887 699999999864433
No 9
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=7.7e-36 Score=303.99 Aligned_cols=204 Identities=16% Similarity=0.214 Sum_probs=168.3
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcC-CCCCCChhh
Q 010866 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 280 (498)
Q Consensus 202 k~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~-l~~~~~~~~ 280 (498)
.+.||.++++.++|+|+.+..+||||++.||.+||++++|++|.+|||| +|+++||++|+|++++..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 99999999999999886542 221000112
Q ss_pred HHHH-----HHHHhhhcCC------------CCCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccc
Q 010866 281 LKEW-----TSRAEICDGL------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 343 (498)
Q Consensus 281 l~~W-----~~lv~~v~~~------------~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~ 343 (498)
...| .+++..++.. +...+|+++| |+ .++||++.|...||.+.|. |++.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~iD-~G----vK~nIlr~L~~rg~~vtVV------P~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVID-FG----VKRNILRELVKRGCRVTVV------PADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEEE-cC----ccHHHHHHHHHCCCeEEEE------cCCCC--
Confidence 2234 3455555431 1246899997 87 8899999999999999987 65432
Q ss_pred cccCCChhhhHHHHHhc-cCCCEEEEcCCCCCC-CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCC
Q 010866 344 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 421 (498)
Q Consensus 344 ~~~~~~p~~y~~~~~~l-~~~DGIilpGG~g~~-~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~ 421 (498)
+.+.+ .++|||+||||||+| .++..+..++..++.++|+||||||||||++|+|++++|||++|++
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGHrG 280 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGHRG 280 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCCCC
Confidence 11333 589999999999998 5688999999999999999999999999999999999999999998
Q ss_pred ccCCCCCCCeeeeCC
Q 010866 422 EFDPNTKNPCVIFMP 436 (498)
Q Consensus 422 E~~~~~~~~vi~l~~ 436 (498)
.+|||+++.+
T Consensus 281 -----~NhPV~dl~t 290 (368)
T COG0505 281 -----ANHPVKDLDT 290 (368)
T ss_pred -----CCcCcccccC
Confidence 4789998754
No 10
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.98 E-value=2.8e-32 Score=268.55 Aligned_cols=175 Identities=56% Similarity=0.825 Sum_probs=158.6
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
++||+||||++..|+|.|+.++|.+++.+....+.+.|+++++++..+. ++.+..+|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~----------~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENA----------EEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccch----------hhhhccCCEEEECCCCCCcch
Confidence 4899999999999999999999999998888888999999887644211 246788999999999999888
Q ss_pred hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCC-ccCcCCcccccCcEeEEE
Q 010866 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 456 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~-~~~~~G~tmrlG~~~v~i 456 (498)
.+.+.++++++++++|+||||+|||+|+++||+++++|+++++.|+++..++|++.+++.+ ...++|+|||||+|++.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8889999999999999999999999999999999999999999999888899999988764 467789999999999999
Q ss_pred eeCchHHHHhhCCCeeEEecccccccc
Q 010866 457 QIKDCKSAKLFICGFNYVEIIISKANM 483 (498)
Q Consensus 457 ~~g~S~l~~iYg~~~i~vnslh~q~~~ 483 (498)
.+| |+++++||++.+.+|+.|+||+-
T Consensus 151 ~~~-s~l~~~~g~~~~~~n~~H~~~v~ 176 (235)
T cd01746 151 KPG-TLAHKYYGKDEVEERHRHRYEVN 176 (235)
T ss_pred CCC-ChHHHHhCCCEEEEecCcccccC
Confidence 999 99999999999999999999973
No 11
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=1.4e-30 Score=270.66 Aligned_cols=201 Identities=15% Similarity=0.235 Sum_probs=158.0
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHH
Q 010866 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (498)
Q Consensus 203 ~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~ 282 (498)
++||.+|++.++|||+.+..|||||++.||..||++++|++|.+|||| +|+++||++|+|+++|.....+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999 9999999999999988643211100111233
Q ss_pred HH-----HHHHhhhcCCC----------CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccC
Q 010866 283 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 347 (498)
Q Consensus 283 ~W-----~~lv~~v~~~~----------~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~ 347 (498)
.| .+++..+++.+ ...+|+++| |+ .+.|++++|+.+|+.+.+. +.+..
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~viD-~G----~k~nivr~L~~~G~~v~vv------p~~~~------ 210 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAID-FG----VKRNILRELAERGCRVTVV------PATTT------ 210 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEEe-CC----cHHHHHHHHHHCCCEEEEE------eCCCC------
Confidence 34 45666665421 136899997 76 7789999999999887764 33210
Q ss_pred CChhhhHHHHHhc-cCCCEEEEcCCCCCC-CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCC
Q 010866 348 ENPDAYKAAWKLL-KGADGILVPGGFGNR-GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 425 (498)
Q Consensus 348 ~~p~~y~~~~~~l-~~~DGIilpGG~g~~-~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~ 425 (498)
+ .+.. .++||||||||||++ .....++.++++.+.++|+||||+|||+|++++|+++++++++|+..
T Consensus 211 --~------~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh~G~--- 279 (360)
T PRK12564 211 --A------EEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGHRGA--- 279 (360)
T ss_pred --H------HHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCccCC---
Confidence 0 0111 269999999999997 34667889999998899999999999999999999999999887653
Q ss_pred CCCCCeeee
Q 010866 426 NTKNPCVIF 434 (498)
Q Consensus 426 ~~~~~vi~l 434 (498)
++|+...
T Consensus 280 --~~pv~~~ 286 (360)
T PRK12564 280 --NHPVKDL 286 (360)
T ss_pred --ceeeEEC
Confidence 4566554
No 12
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.96 E-value=3.5e-30 Score=266.99 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=154.5
Q ss_pred HhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHH
Q 010866 203 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 282 (498)
Q Consensus 203 ~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~ 282 (498)
++||.+|++.++|||+.+..|||||++.+|.+||++++|++|.+|||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 689999999999999999999999999999999999999999999999 99999999999999886422 11 1111222
Q ss_pred HH---HHHHhhhcCCC------CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhh
Q 010866 283 EW---TSRAEICDGLH------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 353 (498)
Q Consensus 283 ~W---~~lv~~v~~~~------~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y 353 (498)
.| .+++..++..+ ...+|+++| |+ .+.|+.++|+.+|+.+.+. +.+.. +
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~viD-~G----~k~ni~~~L~~~G~~v~vv------p~~~~--------~--- 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALID-FG----YKKSILRSLSKRGCKVTVL------PYDTS--------L--- 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEEC-CC----HHHHHHHHHHHCCCeEEEE------ECCCC--------H---
Confidence 22 45666665422 235899997 76 8899999999999887664 32210 0
Q ss_pred HHHHHhc--cCCCEEEEcCCCCCCC-chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCC
Q 010866 354 KAAWKLL--KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNP 430 (498)
Q Consensus 354 ~~~~~~l--~~~DGIilpGG~g~~~-~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~ 430 (498)
+.+ .++|||||+||||++. ....++.++.+.++ +|+||||+|||+|++++|+++++++++|+.. +||
T Consensus 202 ----~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~gh~G~-----~hp 271 (354)
T PRK12838 202 ----EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPFGHRGA-----NHP 271 (354)
T ss_pred ----HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCCCccCC-----ceE
Confidence 122 3799999999999873 34567788888876 9999999999999999999999998887652 456
Q ss_pred eee
Q 010866 431 CVI 433 (498)
Q Consensus 431 vi~ 433 (498)
+..
T Consensus 272 V~~ 274 (354)
T PRK12838 272 VID 274 (354)
T ss_pred EEE
Confidence 654
No 13
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.96 E-value=2.4e-30 Score=268.58 Aligned_cols=201 Identities=16% Similarity=0.229 Sum_probs=155.9
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhH
Q 010866 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (498)
Q Consensus 202 k~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l 281 (498)
.++||.+|++.++|||+.+..|||||++.||.+||++++|++|.+|||| +|+++||++|+|+++|..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999 999999999999998864322210001112
Q ss_pred HHH-----HHHHhhhcCC------C----CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCcccccc
Q 010866 282 KEW-----TSRAEICDGL------H----EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 346 (498)
Q Consensus 282 ~~W-----~~lv~~v~~~------~----~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~ 346 (498)
..| .+++..++.. . ...+|+++| |+ .+.|+.++|+.+|+.+.+. +.+..
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~viD-~G----~k~ni~~~L~~~G~~v~vv------p~~~~----- 206 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVID-FG----VKQNILRRLVKRGCEVTVV------PYDTD----- 206 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEEe-CC----cHHHHHHHHHHCCCEEEEE------cCCCC-----
Confidence 222 2456655531 1 125899997 87 7789999999999987664 32210
Q ss_pred CCChhhhHHHHHhc-cCCCEEEEcCCCCCCC-chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccC
Q 010866 347 KENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (498)
Q Consensus 347 ~~~p~~y~~~~~~l-~~~DGIilpGG~g~~~-~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~ 424 (498)
+ .+.. ..+|||||+||||++. ....++.++++.+ ++|+||||||||+|++++|+++++++++|+.-
T Consensus 207 ---~------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~~gh~G~-- 274 (358)
T TIGR01368 207 ---A------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMKFGHRGG-- 274 (358)
T ss_pred ---H------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccCcCcCCC--
Confidence 0 0112 2479999999999984 4667888999987 99999999999999999999999999988763
Q ss_pred CCCCCCeeee
Q 010866 425 PNTKNPCVIF 434 (498)
Q Consensus 425 ~~~~~~vi~l 434 (498)
+|||..+
T Consensus 275 ---nhpV~~~ 281 (358)
T TIGR01368 275 ---NHPVKDL 281 (358)
T ss_pred ---ceeeEEC
Confidence 4666554
No 14
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.96 E-value=4.5e-30 Score=269.60 Aligned_cols=202 Identities=17% Similarity=0.181 Sum_probs=156.5
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCC-CCCCChhh
Q 010866 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPL 280 (498)
Q Consensus 202 k~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l-~~~~~~~~ 280 (498)
.+.||.++++.++|||+.+..|||||++.+|.+||++++|+||.+|||| +|+++||++|+|+++|..-+. +.......
T Consensus 120 ~d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~ 198 (415)
T PLN02771 120 DDEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKM 198 (415)
T ss_pred hhhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHH
Confidence 3679999999999999999999999999999999999999999999999 999999999999999965221 10000112
Q ss_pred HHHH----HHHHhhhcCCC---------------------CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEE
Q 010866 281 LKEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDW 335 (498)
Q Consensus 281 l~~W----~~lv~~v~~~~---------------------~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~ 335 (498)
+..| .+++..+++.+ ...+|+++| |+ ++++|++.|+..|+.+.+.
T Consensus 199 ~~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvviD-~G----~K~nIlr~L~~~G~~v~Vv----- 268 (415)
T PLN02771 199 SRSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAYD-FG----IKHNILRRLASYGCKITVV----- 268 (415)
T ss_pred HHhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEEC-CC----hHHHHHHHHHHcCCeEEEE-----
Confidence 2233 34555554311 115899997 77 8999999999999988775
Q ss_pred ecCCCccccccCCChhhhHHHHHh-ccCCCEEEEcCCCCCCC-chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhc
Q 010866 336 IPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (498)
Q Consensus 336 I~se~l~~~~~~~~p~~y~~~~~~-l~~~DGIilpGG~g~~~-~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~ 413 (498)
+.+.. +.+. -.++|||||+||||++. ....++.++++. .++|+||||||||+|+.|+|++++
T Consensus 269 -P~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~ 332 (415)
T PLN02771 269 -PSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTF 332 (415)
T ss_pred -CCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEE
Confidence 43321 0122 24799999999999984 445667777766 479999999999999999999999
Q ss_pred ccCCCCCCccCCCCCCCeeeeC
Q 010866 414 NLRDANSTEFDPNTKNPCVIFM 435 (498)
Q Consensus 414 ~lk~~~s~E~~~~~~~~vi~l~ 435 (498)
+++++|+.- ++||..+.
T Consensus 333 K~~~Gh~G~-----n~pV~~~~ 349 (415)
T PLN02771 333 KMKFGHHGG-----NHPVRNNR 349 (415)
T ss_pred ECCCCcccc-----eEEEEECC
Confidence 999998763 56776543
No 15
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.95 E-value=7.7e-29 Score=258.96 Aligned_cols=194 Identities=16% Similarity=0.220 Sum_probs=151.1
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhH
Q 010866 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 281 (498)
Q Consensus 202 k~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l 281 (498)
.++||.+|++.++|||+.+..|||||++.||.+||++++|++|.+|||| +|+++||++|.|+++|.....+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 3589999999999999999999999999999999999999999999999 999999999999999965322210001112
Q ss_pred HHH-----HHHHhhhcCC-------C----------------CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEE
Q 010866 282 KEW-----TSRAEICDGL-------H----------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 333 (498)
Q Consensus 282 ~~W-----~~lv~~v~~~-------~----------------~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i 333 (498)
..| .+++..+++. . ...+|+++| ++ ...||.+.|+.+|+++.+.
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viD-~g----~k~ni~~~L~~~G~~v~vv--- 220 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVID-FG----VKYNILRRLKSFGCSITVV--- 220 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEEE-CC----cHHHHHHHHHHCCCeEEEE---
Confidence 222 3555555431 1 136899997 65 6689999999999887664
Q ss_pred EEecCCCccccccCCChhhhHHHHH-hccCCCEEEEcCCCCCCC-chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcch
Q 010866 334 DWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (498)
Q Consensus 334 ~~I~se~l~~~~~~~~p~~y~~~~~-~l~~~DGIilpGG~g~~~-~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~ 411 (498)
+.+.- . .+ ...++|||||+||||++. ....++.++++.+.++|+||||||||+|+.++|++
T Consensus 221 ---p~~~~-~-------------~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~ 283 (382)
T CHL00197 221 ---PATSP-Y-------------QDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAK 283 (382)
T ss_pred ---cCCCC-H-------------HHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCE
Confidence 32211 0 01 123789999999999984 45566778888877899999999999999999999
Q ss_pred hcccCCCCCC
Q 010866 412 VLNLRDANST 421 (498)
Q Consensus 412 v~~lk~~~s~ 421 (498)
+++++++|+.
T Consensus 284 v~k~~~Gh~g 293 (382)
T CHL00197 284 TFKLKFGHRG 293 (382)
T ss_pred EeccCCCCCC
Confidence 9999988765
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.91 E-value=1.8e-24 Score=238.25 Aligned_cols=213 Identities=14% Similarity=0.147 Sum_probs=167.7
Q ss_pred EEEeeeeeecCCCccccCC-chhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHH
Q 010866 178 IHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 256 (498)
Q Consensus 178 ih~t~vp~~~~~~e~KtKp-tQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~ 256 (498)
|-+---|.|..-|-- +++ -+...+.++|-+||+.+||+++.+.-.|||++..||.+|+.+++|+++.||||| +|+++
T Consensus 50 iLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~ 127 (1435)
T KOG0370|consen 50 ILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKK 127 (1435)
T ss_pred EEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHH
Confidence 334445777766655 444 445667889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhcC-------CCCCeEEEEEcccCCccchHHHHHHHHHHcCCccee
Q 010866 257 LRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (498)
Q Consensus 257 LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~~-------~~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v 329 (498)
|||||.|-+.|...+-+..-..|+ -.+++..++. ..+..+|+.+| .+ .+.++++.|...|+++.|
T Consensus 128 lReqGSmLgkl~~e~~~~~~vdpn---~~nLvs~VS~Kep~~y~~Gk~~~I~aiD-cG----~K~N~IRcL~~RGa~vtV 199 (1435)
T KOG0370|consen 128 LREQGSMLGKLSIEKSPVLFVDPN---KRNLVSQVSTKEPKVYGDGKSLRILAID-CG----LKYNQIRCLVKRGAEVTV 199 (1435)
T ss_pred HHhcCcceeEEEecCCCCcccCCC---cccchhhheeccceEEcCCcccEEEEcc-cC----chHHHHHHHHHhCceEEE
Confidence 999999987664332221000000 0345555543 23456899987 55 789999999999999988
Q ss_pred eeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC-chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 330 KLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 330 ~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~-~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
. |++..- . -.++|||+++||||+|. ....+..+++.++.++|+||||+|||+++.|.
T Consensus 200 v------Pw~~~i---------------~-~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~Aa 257 (1435)
T KOG0370|consen 200 V------PWDYPI---------------A-KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAA 257 (1435)
T ss_pred e------cCCccc---------------c-ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhh
Confidence 6 433210 1 12899999999999995 56778899999998899999999999999999
Q ss_pred cchhcccCCCCCCc
Q 010866 409 ARSVLNLRDANSTE 422 (498)
Q Consensus 409 g~~v~~lk~~~s~E 422 (498)
|++++|||++|++.
T Consensus 258 GakT~KmKyGNRGh 271 (1435)
T KOG0370|consen 258 GAKTYKMKYGNRGH 271 (1435)
T ss_pred CCceEEeeccccCC
Confidence 99999999999885
No 17
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.75 E-value=4e-18 Score=167.28 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCC-------CC-----------C
Q 010866 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG-------NR-----------G 376 (498)
Q Consensus 315 SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g-------~~-----------~ 376 (498)
+..+|...+|.-..+. |+- + ++ ..+...+...|||+||||.. .. .
T Consensus 30 ~yv~ai~~aGg~pill------P~~--~------d~---~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~R 92 (243)
T COG2071 30 DYVDAIIKAGGIPILL------PAL--E------DP---EDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPER 92 (243)
T ss_pred HHHHHHHHcCCceEEe------cCC--C------CH---HHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccc
Confidence 4677887787655543 311 0 11 11235677899999999932 10 1
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCccCcCCcccccCcEeEEE
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 456 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~~~~~G~tmrlG~~~v~i 456 (498)
...++.+++.|+++++|+||||+|||+|+++|||++++ +..... ....+.. +.......|++.+
T Consensus 93 D~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q--~i~~~~------~~~~H~~--------~~~~~~~~H~V~i 156 (243)
T COG2071 93 DAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ--DISEQP------GHIDHRQ--------PNPVHIESHEVHI 156 (243)
T ss_pred cHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh--hhhccc------ccccccC--------CCCcccceeEEEe
Confidence 24578899999999999999999999999999999984 221111 1111111 1222344899999
Q ss_pred eeCchHHHHhhCCCeeEEeccccccccc
Q 010866 457 QIKDCKSAKLFICGFNYVEIIISKANME 484 (498)
Q Consensus 457 ~~g~S~l~~iYg~~~i~vnslh~q~~~~ 484 (498)
++| |+|++++|...+.|||+|+|||-.
T Consensus 157 ~~~-s~La~i~g~~~~~VNS~HhQaIk~ 183 (243)
T COG2071 157 EPG-SKLAKILGESEFMVNSFHHQAIKK 183 (243)
T ss_pred cCC-ccHHHhcCccceeecchHHHHHHH
Confidence 999 999999996559999999999853
No 18
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.73 E-value=7.7e-18 Score=161.56 Aligned_cols=110 Identities=34% Similarity=0.479 Sum_probs=89.0
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcC-C-CCCC
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpG-G-~g~~ 375 (498)
++|+||| |+ ++ +.+|+.+||+++|+++.+. ++| +.+..+|+||||| | |++.
T Consensus 2 ~~i~IID-yg-~G-NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAIID-YG-SG-NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEEE-cC-cc-hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 4799997 98 66 9999999999999887764 344 6789999999999 4 3331
Q ss_pred --C--chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCC-----CCCCeeeeCCC-CccCcCCc
Q 010866 376 --G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 445 (498)
Q Consensus 376 --~--~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~-----~~~~vi~l~~e-~~~~~~G~ 445 (498)
. ..+.++.++.+.+.++|+||||+|||||. ..|+|.+.. .++.|+++.++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf------------e~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF------------ERSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh------------hcccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 1 23778999998889999999999999999 677776542 46888888776 68999999
Q ss_pred c
Q 010866 446 T 446 (498)
Q Consensus 446 t 446 (498)
+
T Consensus 123 N 123 (204)
T COG0118 123 N 123 (204)
T ss_pred c
Confidence 5
No 19
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.66 E-value=9.7e-17 Score=156.37 Aligned_cols=136 Identities=21% Similarity=0.128 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCC-C-C---------C------
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG-N-R---------G------ 376 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g-~-~---------~------ 376 (498)
.+.+++++.+|+.+... +... . .....+.+..+||||||||.- - | .
T Consensus 27 ~~Yv~~i~~aG~~pv~i------p~~~-~----------~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~ 89 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPI------PYDA-D----------DEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP 89 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-------SS-------------HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH
T ss_pred HHHHHHHHHcCCEEEEE------ccCC-C----------HHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH
Confidence 45688999999876643 3221 0 112335678999999999982 1 1 1
Q ss_pred --chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCCCCccCcCCcccccCcEeE
Q 010866 377 --VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 454 (498)
Q Consensus 377 --~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~~~~~G~tmrlG~~~v 454 (498)
...++.+++.++++++|+||||+|||+|++++||+++.. ... ..+ ..+. ..+ . -....|++
T Consensus 90 ~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q~--~~~-~~~--~~~~---~~~------~---~~~~~h~v 152 (217)
T PF07722_consen 90 ERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQD--IPD-QPG--FPDH---RQH------P---QDFPSHPV 152 (217)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEESC--CCC-SS---EEEC---EE-------S----TS--EEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCceee--ccc-CcC--cccc---ccc------c---cccccccc
Confidence 123566788888999999999999999999999999852 211 100 0000 000 0 13458999
Q ss_pred EEeeCchHHHHhhCCCeeEEeccccccccc
Q 010866 455 YFQIKDCKSAKLFICGFNYVEIIISKANME 484 (498)
Q Consensus 455 ~i~~g~S~l~~iYg~~~i~vnslh~q~~~~ 484 (498)
.+.++ |+++++||.+++.|||+|+||+-+
T Consensus 153 ~i~~~-s~l~~~~~~~~~~vns~Hhq~v~~ 181 (217)
T PF07722_consen 153 RIVPG-SLLAKILGSEEIEVNSFHHQAVKP 181 (217)
T ss_dssp EEETT-STCCCTSHHCTEEEEEEECEEECC
T ss_pred eeccC-chHHHHhCcCcceeecchhhhhhc
Confidence 99999 999999998999999999999865
No 20
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.60 E-value=3.9e-15 Score=141.84 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=69.7
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCCCCCCCc
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGV 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG~g~~~~ 377 (498)
|.+||.|.++. .++.+.|+..|+++.+. +.+++.. +.+ .++|||||+||||++..
T Consensus 2 il~idn~Dsft---~nl~~~l~~~g~~v~v~------~~~~~~~--------------~~~~~~~~d~iils~GPg~p~~ 58 (187)
T PRK08007 2 ILLIDNYDSFT---WNLYQYFCELGADVLVK------RNDALTL--------------ADIDALKPQKIVISPGPCTPDE 58 (187)
T ss_pred EEEEECCCccH---HHHHHHHHHCCCcEEEE------eCCCCCH--------------HHHHhcCCCEEEEcCCCCChHH
Confidence 78899887554 57999999999877664 3332211 222 36899999999999743
Q ss_pred -hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCC
Q 010866 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (498)
Q Consensus 378 -~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~ 417 (498)
....+.++. .+.++|+||||+|||+|+.++|+++.+.+.
T Consensus 59 ~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~ 98 (187)
T PRK08007 59 AGISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAK 98 (187)
T ss_pred CCccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCC
Confidence 234455555 467899999999999999999999986543
No 21
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.59 E-value=1.2e-14 Score=145.12 Aligned_cols=159 Identities=21% Similarity=0.140 Sum_probs=97.4
Q ss_pred CeEEEEEcccCC-ccc----hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCC
Q 010866 297 PVRIAMVGKYTG-LSD----AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 371 (498)
Q Consensus 297 ~v~IaIVgkY~~-l~d----ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG 371 (498)
++.|||...... ... ......+++..+|....+. +...-+. ....+.+..+|||||+||
T Consensus 7 ~P~Igi~~~~~~~~~~~~~~~~~~y~~~i~~aGg~pv~l------p~~~~~~----------~~~~~~l~~~DGlil~GG 70 (254)
T PRK11366 7 NPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIAL------PHALAEP----------SLLEQLLPKLDGIYLPGS 70 (254)
T ss_pred CCEEEEeCCCcccCcchHHHHHHHHHHHHHHCCCEEEEe------cCCCCCH----------HHHHHHHHhCCEEEeCCC
Confidence 457998852111 011 1134678999888754332 3211000 011245677999999998
Q ss_pred CCC--C---------Cc------hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeee
Q 010866 372 FGN--R---------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 434 (498)
Q Consensus 372 ~g~--~---------~~------~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l 434 (498)
+.+ | .. ...++++++|.+.++|+||||+|||+|+++|||++++- . + +. +. ...+-
T Consensus 71 ~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~--~-~-~~-~~---~~~h~ 142 (254)
T PRK11366 71 PSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRK--L-C-EQ-PE---LLEHR 142 (254)
T ss_pred CCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeec--c-c-cc-cc---ccccc
Confidence 642 1 11 34578899999999999999999999999999999842 1 0 00 00 00000
Q ss_pred CCCCccCcCCcccccCcEeEEEeeCchHHHHhh-CCCeeEEecccccccc
Q 010866 435 MPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLF-ICGFNYVEIIISKANM 483 (498)
Q Consensus 435 ~~e~~~~~~G~tmrlG~~~v~i~~g~S~l~~iY-g~~~i~vnslh~q~~~ 483 (498)
.. ...+ + .....+.|.+.+.++ |+++.+| +.+.+.|||+|+|++-
T Consensus 143 ~~-~~~~-~-~~~~~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H~q~V~ 188 (254)
T PRK11366 143 ED-PELP-V-EQQYAPSHEVQVEEG-GLLSALLPECSNFWVNSLHGQGAK 188 (254)
T ss_pred cC-Cccc-c-ccccCCceEEEECCC-CcHHHhcCCCceEEeehHHHHHHh
Confidence 00 0000 0 001123689999999 9999998 4567899999999873
No 22
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.57 E-value=1.1e-14 Score=138.85 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=67.7
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCCCCCCCc
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGV 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG~g~~~~ 377 (498)
|.+||.|.++. .++.+.|+..|+.+.+. +..+... +.+ .++|||||+||||++..
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~v~v~------~~~~~~~--------------~~~~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 2 VLMIDNYDSFT---YNLVQYFCELGAEVVVK------RNDSLTL--------------QEIEALLPLLIVISPGPCTPNE 58 (188)
T ss_pred EEEEECCcCHH---HHHHHHHHHcCCceEEE------ECCCCCH--------------HHHHhcCCCEEEEcCCCCChhh
Confidence 78898776433 57999999999887654 2221100 122 25899999999999742
Q ss_pred -hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 378 -~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
....+.++++ ..++|+||||+|||+|+.++||++.++
T Consensus 59 ~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~ 96 (188)
T TIGR00566 59 AGISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRA 96 (188)
T ss_pred cchhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeC
Confidence 2346777777 678999999999999999999999753
No 23
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.56 E-value=3.5e-14 Score=135.21 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=70.0
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
+||.+||.|.++. .++.++|+.+|+++.+. +..+.+ + +.+..+||||++||+|.+..
T Consensus 2 ~~iliid~~dsf~---~~i~~~l~~~g~~~~v~------~~~~~~-------~-------~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFT---FNLVDLIRKLGVPMQVV------NVEDLD-------L-------DEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchH---HHHHHHHHHcCCcEEEE------ECCccC-------h-------hHhccCCEEEECCCCCChHH
Confidence 5899999776443 35999999999887764 222111 1 45678999999999996532
Q ss_pred -hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 378 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 378 -~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
....+.++. .+.++|+||||+|||+|+.++||+|.++
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~ 96 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNL 96 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeec
Confidence 233455654 5678999999999999999999999653
No 24
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.54 E-value=5.6e-14 Score=132.53 Aligned_cols=96 Identities=21% Similarity=0.379 Sum_probs=72.7
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-Cch
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GVQ 378 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-~~~ 378 (498)
|+++| |+ ...++.++|+.+|+.+.+. +.+.- + ......++|||+++||++++ ...
T Consensus 1 i~i~d-~g----~~~~~~~~l~~~G~~~~~~------~~~~~--------~-----~~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVID-FG----VKHNILRELLKRGCEVTVV------PYNTD--------A-----EEILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEEe-cC----cHHHHHHHHHHCCCeEEEE------ECCCC--------H-----HHHhhcCCCEEEECCCCCChhHhH
Confidence 56776 77 4468999999999876653 22210 0 00123579999999999876 346
Q ss_pred hHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCC
Q 010866 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 419 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~ 419 (498)
...+.++++.++++|+||||+|||+|+.++|+++.+++.++
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~~ 97 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFGH 97 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCCC
Confidence 67788999999999999999999999999999998765443
No 25
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.51 E-value=1.1e-13 Score=131.34 Aligned_cols=91 Identities=21% Similarity=0.234 Sum_probs=68.2
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc--CCCEEEEcCCCCCCCc
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~--~~DGIilpGG~g~~~~ 377 (498)
|++|| |+. . .-.++.++|+..|+++.+. +.+.+ + +.+. ++||||+|||++....
T Consensus 1 i~iiD-~g~-~-~~~~l~~~l~~~g~~~~~~----~~~~~----------~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVLD-FGS-Q-YTQLIARRLRELGVYSELV----PNTTP----------L-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEEE-CCc-h-HHHHHHHHHHHcCCEEEEE----eCCCC----------H-------HHHhhcCCCEEEECCCCCCcCc
Confidence 57886 762 2 5568999999999877653 21210 1 2233 3569999999987654
Q ss_pred hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
......++.+.+.++|+||||+|||+|+.++|+++.+
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~ 93 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGR 93 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEec
Confidence 4556788888999999999999999999999998864
No 26
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.51 E-value=8e-14 Score=132.76 Aligned_cols=92 Identities=14% Similarity=0.284 Sum_probs=66.6
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCCCCCCCc
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGV 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG~g~~~~ 377 (498)
|.+||.|.++. .++.+.|+..|+++.+. +.+.... +.+ .++|+||++|||+++..
T Consensus 2 il~id~~dsf~---~nl~~~l~~~~~~~~v~------~~~~~~~--------------~~~~~~~~~~iilsgGP~~~~~ 58 (191)
T PRK06774 2 LLLIDNYDSFT---YNLYQYFCELGTEVMVK------RNDELQL--------------TDIEQLAPSHLVISPGPCTPNE 58 (191)
T ss_pred EEEEECCCchH---HHHHHHHHHCCCcEEEE------eCCCCCH--------------HHHHhcCCCeEEEcCCCCChHh
Confidence 78888776443 47899999999887765 3322211 222 36899999999998732
Q ss_pred h-hHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 378 Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 378 ~-g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
. .....++. .+.++|+||||+|||+|+.++||++.+.
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~ 96 (191)
T PRK06774 59 AGISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRA 96 (191)
T ss_pred CCCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeC
Confidence 2 23444544 4678999999999999999999999753
No 27
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.51 E-value=8.9e-14 Score=135.46 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=72.6
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC-
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 376 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~- 376 (498)
++|.+++.|..+. .++.+.|+..|+.+.+. +.+.... ....+.+.++|||||+|||+++.
T Consensus 1 ~~ilv~d~~~~~~---~~~~~~l~~~G~~~~~~------~~~~~~~----------~~~~~~~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 1 MRILVVDNYDSFV---FNLVQYLGQLGVEAEVW------RNDDPRL----------ADEAAVAAQFDGVLLSPGPGTPER 61 (214)
T ss_pred CeEEEEECCCcHH---HHHHHHHHHcCCcEEEE------ECCCcCH----------HHHHHhhcCCCEEEECCCCCChhh
Confidence 4788888665222 35788899999887754 2221100 00113356899999999999873
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
....+.+++++.+.++|+||||+|||+|+.++||++.+.
T Consensus 62 ~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~ 100 (214)
T PRK07765 62 AGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRA 100 (214)
T ss_pred cchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeC
Confidence 344668899999999999999999999999999999863
No 28
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.48 E-value=2.6e-13 Score=129.09 Aligned_cols=94 Identities=17% Similarity=0.300 Sum_probs=66.2
Q ss_pred EEEEcccCCccchH-HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc-
Q 010866 300 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV- 377 (498)
Q Consensus 300 IaIVgkY~~l~day-~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~- 377 (498)
|.|+|.|. .| .++.+.|+.+|+++.+. +....... ..+. .++||||++||||++..
T Consensus 2 iliid~~d----~f~~~i~~~l~~~g~~~~v~------~~~~~~~~-----------~~~~-~~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNYD----SFTYNLVQYLGELGAEVVVY------RNDEITLE-----------EIEA-LNPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEEE------ECCCCCHH-----------HHHh-CCCCEEEEcCCCCChHHc
Confidence 78888554 44 57999999999887765 32211100 0122 24899999999998732
Q ss_pred hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
....+.++. ...++|+||||+|||+|+.++|+++.+.+
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~ 97 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAK 97 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecC
Confidence 233445554 45789999999999999999999997643
No 29
>CHL00101 trpG anthranilate synthase component 2
Probab=99.46 E-value=4.2e-13 Score=128.06 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=67.3
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchh
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g 379 (498)
|.++|.|.++. .++.+.|+..|+++.+. +....... .-...++||||++||||.+...+
T Consensus 2 iliid~~dsft---~~l~~~l~~~g~~~~v~------~~~~~~~~------------~~~~~~~dgiiisgGpg~~~~~~ 60 (190)
T CHL00101 2 ILIIDNYDSFT---YNLVQSLGELNSDVLVC------RNDEIDLS------------KIKNLNIRHIIISPGPGHPRDSG 60 (190)
T ss_pred EEEEECCCchH---HHHHHHHHhcCCCEEEE------ECCCCCHH------------HHhhCCCCEEEECCCCCChHHCc
Confidence 77888554332 47999999999877654 33221110 01225799999999999874323
Q ss_pred HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 380 ~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
....+..+.+.++|+||||+|||+|+.++|+++.+.+
T Consensus 61 ~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~ 97 (190)
T CHL00101 61 ISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAP 97 (190)
T ss_pred chHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECC
Confidence 3333444567899999999999999999999998644
No 30
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.44 E-value=5e-13 Score=128.45 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=67.3
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCch-
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ- 378 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~- 378 (498)
|.+||.|.++. .++.+.|+..|+++.+. ..++...+ . -...++|||||+||||++...
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~v~v~------~~~~~~~~----------~--~~~~~~d~iIlsgGP~~p~~~~ 60 (195)
T PRK07649 2 ILMIDNYDSFT---FNLVQFLGELGQELVVK------RNDEVTIS----------D--IENMKPDFLMISPGPCSPNEAG 60 (195)
T ss_pred EEEEeCCCccH---HHHHHHHHHCCCcEEEE------eCCCCCHH----------H--HhhCCCCEEEECCCCCChHhCC
Confidence 78898776443 47999999999877664 32211100 0 012368999999999987332
Q ss_pred hHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
.....++. .+.++|+||||+|||+|+.++|+++.+.+
T Consensus 61 ~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~ 97 (195)
T PRK07649 61 ISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAE 97 (195)
T ss_pred CchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCC
Confidence 23444543 35789999999999999999999998654
No 31
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.43 E-value=7.1e-13 Score=124.24 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=65.3
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchh
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g 379 (498)
|+++| |+.. .-.++.++|+.+|+.+.+. +.+.- . ....+.++||||+|||++......
T Consensus 1 i~~iD-~g~~--~~~~~~~~l~~~G~~~~~~------~~~~~-~------------~~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILILD-FGSQ--YTHLIARRVRELGVYSEIL------PNTTP-L------------EEIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEEE-CCCc--hHHHHHHHHHhcCceEEEe------cCCCC-h------------hhhcccCCCEEEECCCcccccccc
Confidence 56786 6521 2357899999999876553 22110 0 002567899999999988653222
Q ss_pred HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 380 ~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
.....+++.+.++|+||||+|||+|+.++|+++.+
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~ 93 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVER 93 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEe
Confidence 23445667778999999999999999999998864
No 32
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.42 E-value=5.1e-13 Score=128.58 Aligned_cols=106 Identities=22% Similarity=0.267 Sum_probs=72.8
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-Cc-
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GV- 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-~~- 377 (498)
|+|+| |+ .+ +..|+.+||++.|+++.+. . +| +.+.++|+||+||+.... ..
T Consensus 2 i~iid-yg-~g-N~~s~~~al~~~g~~~~~v------~-----------~~-------~~l~~~D~lIlPG~g~~~~~~~ 54 (192)
T PRK13142 2 IVIVD-YG-LG-NISNVKRAIEHLGYEVVVS------N-----------TS-------KIIDQAETIILPGVGHFKDAMS 54 (192)
T ss_pred EEEEE-cC-Cc-cHHHHHHHHHHcCCCEEEE------e-----------CH-------HHhccCCEEEECCCCCHHHHHH
Confidence 88996 98 55 8999999999998876543 2 12 467789999999853211 11
Q ss_pred ----hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCC----CCCCCeeeeCCCCccCcCCcc
Q 010866 378 ----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP----NTKNPCVIFMPEGSKTHMGGT 446 (498)
Q Consensus 378 ----~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~----~~~~~vi~l~~e~~~~~~G~t 446 (498)
.+..++++. ..++|+||||+|||+|+-.- +|... -.+..|.++.++.++|||||+
T Consensus 55 ~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~------------~eg~~~GLgll~~~V~rf~~~~~vph~GWn 117 (192)
T PRK13142 55 EIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHS------------DEGDASGLGFIPGNISRIQTEYPVPHLGWN 117 (192)
T ss_pred HHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhc------------ccCCcCccCceeEEEEECCCCCCCCccccc
Confidence 245666666 46899999999999999332 12110 124556666544578999995
No 33
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.42 E-value=8.5e-13 Score=126.14 Aligned_cols=94 Identities=14% Similarity=0.255 Sum_probs=67.2
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc-h
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-Q 378 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~-~ 378 (498)
|.+||.|.++. .++.+.|+..|+.+.+. +....+.. . -...++|+++++|||+++.. .
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~~~~~------~~~~~~~~-----------~-~~~~~~~~iilsgGp~~~~~~~ 60 (193)
T PRK08857 2 LLMIDNYDSFT---YNLYQYFCELGAQVKVV------RNDEIDID-----------G-IEALNPTHLVISPGPCTPNEAG 60 (193)
T ss_pred EEEEECCCCcH---HHHHHHHHHCCCcEEEE------ECCCCCHH-----------H-HhhCCCCEEEEeCCCCChHHCc
Confidence 78999777543 57899999999887764 32211100 0 01235899999999998732 2
Q ss_pred hHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
...+.++. .+.++|+||||+|||+|+.++|+++.+.
T Consensus 61 ~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~ 96 (193)
T PRK08857 61 ISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRA 96 (193)
T ss_pred chHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeC
Confidence 23455554 5679999999999999999999999763
No 34
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.41 E-value=9.7e-13 Score=127.86 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=67.0
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCCCCCCC
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 376 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG~g~~~ 376 (498)
+|+++|.|.+ ..+|+.++|+..|+++.+. +.+. .. +.+ .++|||||+||||++.
T Consensus 3 ~il~iD~~ds---f~~nl~~~l~~~g~~~~v~------~~~~-~~--------------~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 3 HVVLIDNHDS---FVYNLVDAFAVAGYKCTVF------RNTV-PV--------------EEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred EEEEEECCcC---HHHHHHHHHHHCCCcEEEE------eCCC-CH--------------HHHHhcCCCEEEEeCCCCCHH
Confidence 7999984442 4478999999999888765 3221 00 222 3789999999999974
Q ss_pred chh-HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 377 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 377 ~~g-~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
..+ ..+.++.+. .++|+||||+|||+|+.++|+++.+
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~ 96 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEP 96 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeecc
Confidence 322 245555444 5799999999999999999999974
No 35
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.41 E-value=5.5e-13 Score=125.75 Aligned_cols=94 Identities=28% Similarity=0.405 Sum_probs=72.7
Q ss_pred EEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC-chhH
Q 010866 302 MVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGK 380 (498)
Q Consensus 302 IVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~-~~g~ 380 (498)
++|.|.+ .-.|+.++|++.|+++.+ .|++.+.. ..++.+.++|||+++||++.+. ....
T Consensus 2 viD~~~~---~~~~l~~~l~~~~~~~~v----~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~ 61 (192)
T PF00117_consen 2 VIDNGDS---FTHSLVRALRELGIDVEV----VRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGL 61 (192)
T ss_dssp EEESSHT---THHHHHHHHHHTTEEEEE----EETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHH
T ss_pred EEeCCHH---HHHHHHHHHHHCCCeEEE----EECCCchh-------------hhhhhhcCCCEEEECCcCCcccccccc
Confidence 5664432 336899999999966554 45443211 1112478999999999999986 6888
Q ss_pred HHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 381 ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 381 i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
..+++++++.++|+||||+|||+|+.++|+++.+.
T Consensus 62 ~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~ 96 (192)
T PF00117_consen 62 IELIREARERKIPILGICLGHQILAHALGGKVVPS 96 (192)
T ss_dssp HHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEE
T ss_pred ccccccccccceEEEEEeehhhhhHHhcCCccccc
Confidence 99999999999999999999999999999998753
No 36
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.41 E-value=1.2e-12 Score=125.80 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=85.3
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
++|+||| |+ .+ ++.|+.++|++.|+++.+. . ++ +.+.++|+||+|| +|.+
T Consensus 1 m~i~iid-~g-~g-n~~s~~~~l~~~g~~~~~v------~-----------~~-------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVIID-TG-CA-NLSSVKFAIERLGYEPVVS------R-----------DP-------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEEe-CC-Cc-hHHHHHHHHHHCCCeEEEE------C-----------CH-------HHhCCCCEEEECC-CCchHH
Confidence 4799997 87 44 8999999999998766554 2 11 4567899999976 4443
Q ss_pred Cchh--HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeCC-CCccCcCCcccccCcE
Q 010866 376 GVQG--KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMP-EGSKTHMGGTMRLGSR 452 (498)
Q Consensus 376 ~~~g--~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~~-e~~~~~~G~tmrlG~~ 452 (498)
.... ....++.+++.++|+||||+|||+|+.+++.... ....+ -.+..+.++.. ..++|++|| +
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~------~~~lg-~~~g~v~~~~~~~~~~p~~G~------~ 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGG------VDCLG-IIDGPVKKMTDFGLPLPHMGW------N 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCC------CCCcc-cccEEEEECCCCCCCCCcccc------c
Confidence 1111 1123445555689999999999999988854210 00000 01123333321 235677777 3
Q ss_pred eEEEeeCchHHHHhhCCCeeEEeccccccc
Q 010866 453 RTYFQIKDCKSAKLFICGFNYVEIIISKAN 482 (498)
Q Consensus 453 ~v~i~~g~S~l~~iYg~~~i~vnslh~q~~ 482 (498)
++.+.++ +.+.+-.. +...+--.|+.+.
T Consensus 120 ~v~~~~~-~~l~~~l~-~~~~v~~~Hs~~l 147 (196)
T PRK13170 120 QVTPQAG-HPLFQGIE-DGSYFYFVHSYAM 147 (196)
T ss_pred eeEeCCC-ChhhhCCC-cCCEEEEECeeec
Confidence 4555555 44444343 3455666666654
No 37
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.41 E-value=2.2e-12 Score=124.09 Aligned_cols=141 Identities=26% Similarity=0.276 Sum_probs=88.3
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-Cc-
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-GV- 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-~~- 377 (498)
|++|| |+ .+ +-+|+.++|+..|+++.+. .. | +.+.++|+|||||+.... ..
T Consensus 2 i~iid-~g-~~-n~~~v~~~l~~~g~~~~~~------~~-----------~-------~~l~~~d~lilPG~g~~~~~~~ 54 (201)
T PRK13152 2 IALID-YK-AG-NLNSVAKAFEKIGAINFIA------KN-----------P-------KDLQKADKLLLPGVGSFKEAMK 54 (201)
T ss_pred EEEEE-CC-CC-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHcCCCEEEECCCCchHHHHH
Confidence 88997 98 44 7799999999998765432 21 1 456789999998753321 11
Q ss_pred ----hhHHHHHHH-HHHcCCCEEeehHHHHHHHHH-hcchhcccCCCCCCccCCCCCCCeeeeCCC--CccCcCCccccc
Q 010866 378 ----QGKILAAKY-AREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMPE--GSKTHMGGTMRL 449 (498)
Q Consensus 378 ----~g~i~~i~~-a~e~~iPiLGIClGmQll~va-~g~~v~~lk~~~s~E~~~~~~~~vi~l~~e--~~~~~~G~tmrl 449 (498)
.+....++. +.+.++|+||||+|||+|+.+ .++... ++- ..+ +..|.++... ..++|+|
T Consensus 55 ~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~--~~l--g~~----~g~v~~~~~~~~~~~~~~g----- 121 (201)
T PRK13152 55 NLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVC--EGL--GFI----EGEVVKFEEDLNLKIPHMG----- 121 (201)
T ss_pred HHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCc--CCc--ccc----cEEEEECCCCCCCcCCccC-----
Confidence 123444544 468899999999999999976 222111 110 011 2234332111 1245555
Q ss_pred CcEeEEEeeCchHHHHhhCC--CeeEEeccccccc
Q 010866 450 GSRRTYFQIKDCKSAKLFIC--GFNYVEIIISKAN 482 (498)
Q Consensus 450 G~~~v~i~~g~S~l~~iYg~--~~i~vnslh~q~~ 482 (498)
++++.+.++ +.+++..+. ....++|+|.|+.
T Consensus 122 -~~~v~~~~~-~~l~~~l~~~~~~~~vHS~~v~~~ 154 (201)
T PRK13152 122 -WNELEILKQ-SPLYQGIPEKSDFYFVHSFYVKCK 154 (201)
T ss_pred -eEEEEECCC-ChhhhCCCCCCeEEEEcccEeecC
Confidence 467788888 778777764 4577899998864
No 38
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.40 E-value=1.9e-12 Score=122.31 Aligned_cols=96 Identities=21% Similarity=0.325 Sum_probs=67.0
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchh
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 379 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g 379 (498)
|.+++.|++.. .++.++|+.+|+++.+. +.+...+ ....+.++||||++||++.+....
T Consensus 1 il~~~~~~~~~---~~~~~~l~~~G~~~~~~------~~~~~~~------------~~~~~~~~dgvil~gG~~~~~~~~ 59 (184)
T cd01743 1 ILLIDNYDSFT---YNLVQYLRELGAEVVVV------RNDEITL------------EELELLNPDAIVISPGPGHPEDAG 59 (184)
T ss_pred CEEEeCCCccH---HHHHHHHHHcCCceEEE------eCCCCCH------------HHHhhcCCCEEEECCCCCCcccch
Confidence 35666555322 35788999999877764 3221110 002457899999999999864333
Q ss_pred HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 380 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 380 ~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
....+..+.++++|+||||+|||+|+.++|+++.+.+
T Consensus 60 ~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~ 96 (184)
T cd01743 60 ISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAP 96 (184)
T ss_pred hHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCC
Confidence 4555656667889999999999999999999987543
No 39
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.39 E-value=1.8e-11 Score=131.38 Aligned_cols=89 Identities=21% Similarity=0.268 Sum_probs=63.5
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
+++|||+- .-.+.-.|..-.++|+..|+++ .|+++-. + +.+.++|+|+||||+...
T Consensus 245 ~~~iava~-d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVAR-DAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEEe-cCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 47999984 3333334666788999877654 3444311 0 235688999999997531
Q ss_pred -----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 376 -----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
...+..+.++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124578889999999999999999999998554
No 40
>PLN02335 anthranilate synthase
Probab=99.37 E-value=1.8e-12 Score=127.05 Aligned_cols=99 Identities=15% Similarity=0.284 Sum_probs=69.0
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
...+|.+||.|.++. .++.+.|+.+|+++.+. +.+.++.+. -...++|||||+||||.+
T Consensus 17 ~~~~ilviD~~dsft---~~i~~~L~~~g~~~~v~------~~~~~~~~~------------~~~~~~d~iVisgGPg~p 75 (222)
T PLN02335 17 QNGPIIVIDNYDSFT---YNLCQYMGELGCHFEVY------RNDELTVEE------------LKRKNPRGVLISPGPGTP 75 (222)
T ss_pred ccCcEEEEECCCCHH---HHHHHHHHHCCCcEEEE------ECCCCCHHH------------HHhcCCCEEEEcCCCCCh
Confidence 345899998555332 58999999999888765 332221100 112468999999999987
Q ss_pred Cchh-HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 376 GVQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 376 ~~~g-~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
...+ ..+.++ +.+.++|+||||||||+|+.++|+++...+
T Consensus 76 ~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~ 116 (222)
T PLN02335 76 QDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSP 116 (222)
T ss_pred hhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCC
Confidence 4322 233333 345679999999999999999999997654
No 41
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.36 E-value=3.8e-12 Score=123.97 Aligned_cols=113 Identities=21% Similarity=0.306 Sum_probs=76.2
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
++|+|++ |+ .+ +..|+.++|+.+|+++.+. +. + +.+.++|+||+|| +|.+
T Consensus 2 ~~v~iid-~~-~G-N~~sl~~al~~~g~~v~vv------~~-----------~-------~~l~~~d~iIlPG-~g~~~~ 53 (210)
T CHL00188 2 MKIGIID-YS-MG-NLHSVSRAIQQAGQQPCII------NS-----------E-------SELAQVHALVLPG-VGSFDL 53 (210)
T ss_pred cEEEEEE-cC-Cc-cHHHHHHHHHHcCCcEEEE------cC-----------H-------HHhhhCCEEEECC-CCchHH
Confidence 4799997 87 55 8899999999999877654 21 1 3466799999987 3442
Q ss_pred C---c--hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCeeeeC--CCCccCcCCcc
Q 010866 376 G---V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGT 446 (498)
Q Consensus 376 ~---~--~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi~l~--~e~~~~~~G~t 446 (498)
. + .+..+.++.+.++++|+||||+|||+|+-.+++... +.-.-....|..+. +..++|||||+
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~--------~glg~~~G~v~~~~~~~~~~~p~~Gw~ 123 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKE--------EGLGIYKGQVKRLKHSPVKVIPHMGWN 123 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCc--------CCccceeEEEEECCCCCCCccCccCCc
Confidence 1 1 256678888888999999999999999865544221 00000123344432 22368999994
No 42
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.35 E-value=3.5e-12 Score=122.03 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=74.7
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
++|.+||.|.++. +++.+.|+..|.++.|. ..++++. .+-...++|+|++|+|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~------rnd~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVV------RNDDISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEE------ECCccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 4799999888654 68999999999777664 1112211 0012346899999999999965
Q ss_pred hh-HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCC
Q 010866 378 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDA 418 (498)
Q Consensus 378 ~g-~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~ 418 (498)
.| ..++++++ ..++|+||||||||.++.+||+++...+..
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~ 101 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEP 101 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCC
Confidence 55 56777877 668999999999999999999999876533
No 43
>PRK00758 GMP synthase subunit A; Validated
Probab=99.34 E-value=6.6e-12 Score=118.70 Aligned_cols=89 Identities=27% Similarity=0.371 Sum_probs=60.7
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCC-CEEEEcCCCCCCCch
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGVQ 378 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~-DGIilpGG~g~~~~~ 378 (498)
|+++|.+.+ .-.++.++|+.+|+.+.+. +.+. .+ +.+.++ ||||+|||+......
T Consensus 2 i~iid~~~~---~~~~i~~~l~~~g~~~~~~------~~~~--------~~-------~~l~~~~dgivi~Gg~~~~~~~ 57 (184)
T PRK00758 2 IVVVDNGGQ---YNHLIHRTLRYLGVDAKII------PNTT--------PV-------EEIKAFEDGLILSGGPDIERAG 57 (184)
T ss_pred EEEEECCCc---hHHHHHHHHHHcCCcEEEE------ECCC--------CH-------HHHhhcCCEEEECCCCChhhcc
Confidence 788973332 3467899999999865443 2221 11 345666 999999998432211
Q ss_pred hHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 379 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
. ..+.+++.++|+||||+|||+|+.++|+++.+.
T Consensus 58 ~---~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~ 91 (184)
T PRK00758 58 N---CPEYLKELDVPILGICLGHQLIAKAFGGEVGRG 91 (184)
T ss_pred c---cHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecC
Confidence 1 222333578999999999999999999998753
No 44
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.33 E-value=5.6e-12 Score=125.69 Aligned_cols=119 Identities=17% Similarity=0.238 Sum_probs=79.7
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
+||+++.-+| ++.++.++|+++|+++... . +| +.+.++|+||||||+++.
T Consensus 2 m~igVLa~qG----~~~e~~~aL~~lG~ev~~v------~-----------~~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLALQG----SFNEHIAALRRLGVEAVEV------R-----------KP-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEeCCC----chHHHHHHHHHCCCcEEEe------C-----------CH-------HHhccCCEEEeCCCHHHHHH
Confidence 5899998444 8889999999999876543 2 12 567899999999988763
Q ss_pred C---chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh-c-----chhcccCCCCCCccCCCCCCCeeeeCCCCccCcCCcc
Q 010866 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEF-A-----RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 446 (498)
Q Consensus 376 ~---~~g~i~~i~~a~e~~iPiLGIClGmQll~va~-g-----~~v~~lk~~~s~E~~~~~~~~vi~l~~e~~~~~~G~t 446 (498)
. ..+..+.++.+.+.++|+||||+|||+|+-.. + ...++.-+..-.. +-....+..+.+..++|||||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 1 23577888888889999999999999999553 1 1111111110000 0112344455445678999995
No 45
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.33 E-value=8.3e-12 Score=140.51 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=75.5
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
...+|++|| |+. . .-.++.++|+..|+++.+. +....+. . -...++|+|||+||||.+
T Consensus 515 ~~~~IlVID-~gd-s-~~~~l~~~L~~~G~~v~vv------~~~~~~~-----~--------~~~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLVD-HED-S-FVHTLANYLRQTGASVTTL------RHSHAEA-----A--------FDERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEEE-CCC-h-hHHHHHHHHHHCCCeEEEE------ECCCChh-----h--------hhhcCCCEEEEcCCCCCc
Confidence 346899997 652 1 3568999999999887653 2111100 0 123579999999999997
Q ss_pred CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCC
Q 010866 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (498)
Q Consensus 376 ~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~ 417 (498)
...+....++.+.+.++|+||||+|||+|+.++||++.+++.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~ 614 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPE 614 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCC
Confidence 555567788888999999999999999999999999976543
No 46
>PRK13566 anthranilate synthase; Provisional
Probab=99.31 E-value=1.1e-11 Score=139.68 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=75.7
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
...+|.+|| |+.. .-.++.+.|+..|+++.+. +...-.+ .-...++|||||+||+|.+
T Consensus 525 ~g~~IlvID-~~ds--f~~~l~~~Lr~~G~~v~vv------~~~~~~~-------------~~~~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLVD-HEDS--FVHTLANYFRQTGAEVTTV------RYGFAEE-------------MLDRVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEEE-CCCc--hHHHHHHHHHHCCCEEEEE------ECCCChh-------------HhhhcCCCEEEECCCCCCh
Confidence 446999998 6521 3468999999999887654 2221000 0123578999999999987
Q ss_pred CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 376 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 376 ~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
...+....++.+.+.++|+||||+|||+|+.++||++.+++
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~ 623 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLA 623 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECC
Confidence 55567789999999999999999999999999999997654
No 47
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.30 E-value=1.2e-11 Score=120.56 Aligned_cols=82 Identities=24% Similarity=0.430 Sum_probs=63.4
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--C-
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--G- 376 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~--~- 376 (498)
|+|+| |+ .+ +..|+.+||+..+.++... . +| +.+.++|+||+||+ |.. .
T Consensus 2 i~iid-yg-~g-Nl~s~~~al~~~~~~~~~~------~-----------~~-------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAILD-YG-MG-NIHSCLKAVSLYTKDFVFT------S-----------DP-------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEEE-CC-Cc-hHHHHHHHHHHcCCeEEEE------C-----------CH-------HHhccCCEEEECCC-CchHHHH
Confidence 88996 98 55 8899999999998755432 2 12 46789999999986 432 1
Q ss_pred ----chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhc
Q 010866 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA 409 (498)
Q Consensus 377 ----~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g 409 (498)
..+....++.+.+.++|+||||+|||+|+-+++
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 136777888888899999999999999996554
No 48
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.28 E-value=1.6e-11 Score=117.79 Aligned_cols=81 Identities=32% Similarity=0.425 Sum_probs=62.3
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--C-
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--G- 376 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~--~- 376 (498)
|+++| |+ .+ +..|+.++|+..|+++.+. .. + +.+.++|+||+||+. ++ .
T Consensus 2 i~vid-~g-~g-n~~~~~~~l~~~g~~v~~~------~~-----------~-------~~l~~~d~lilpG~g-~~~~~~ 53 (199)
T PRK13181 2 IAIID-YG-AG-NLRSVANALKRLGVEAVVS------SD-----------P-------EEIAGADKVILPGVG-AFGQAM 53 (199)
T ss_pred EEEEe-CC-CC-hHHHHHHHHHHCCCcEEEE------cC-----------h-------HHhccCCEEEECCCC-CHHHHH
Confidence 78896 87 44 8899999999999876543 11 1 456789999998853 32 1
Q ss_pred ----chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 377 ----~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
..+..+.++.+.+.++|+||||+|||+|+.++
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~ 89 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESS 89 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhc
Confidence 12456778888889999999999999999873
No 49
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.27 E-value=1.7e-11 Score=138.67 Aligned_cols=104 Identities=20% Similarity=0.356 Sum_probs=73.5
Q ss_pred CCeEEEEEcccCCccchH-HHHHHHHHHc-CCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day-~SI~~AL~~a-G~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g 373 (498)
.+++|.+||.|. +| .++.+.|+.. |..+.+ .+++.+..+. +.+..+..+|||||+||||
T Consensus 4 ~~~~iL~ID~~D----Sft~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG 64 (742)
T TIGR01823 4 QRLHVLFIDSYD----SFTYNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPG 64 (742)
T ss_pred CCceEEEEeCCc----chHHHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCC
Confidence 467999999665 44 4788888876 333322 2334433221 0113456899999999999
Q ss_pred CCCchhHHHHHHHHHHc----CCCEEeehHHHHHHHHHhcchhcccCCC
Q 010866 374 NRGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDA 418 (498)
Q Consensus 374 ~~~~~g~i~~i~~a~e~----~iPiLGIClGmQll~va~g~~v~~lk~~ 418 (498)
.+.....+..++++++. ++|+||||+|||+|+.++|+++...+..
T Consensus 65 ~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~~ 113 (742)
T TIGR01823 65 NPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPTP 113 (742)
T ss_pred CccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCCC
Confidence 98665556667777664 4999999999999999999999765533
No 50
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=99.27 E-value=2.4e-10 Score=122.73 Aligned_cols=89 Identities=24% Similarity=0.281 Sum_probs=62.0
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
+++||++- .-.+.--|..=+++|+..|++ +.|+.+-. . +.+.++|+|+||||+...
T Consensus 244 ~~~Iava~-d~afnFy~~~~~~~L~~~g~~------~~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVAQ-DQAFNFYYQDNLDALTHNAAE------LVPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEEe-chhhceeHHHHHHHHHHCCCE------EEEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 47999984 322322345567888877654 34554421 0 235588999999998642
Q ss_pred -----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 376 -----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
...++.+.++.+.+++.|+||||-|||+|+-.+
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124577889999999999999999999999443
No 51
>PLN02347 GMP synthetase
Probab=99.27 E-value=3.2e-11 Score=131.97 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=66.7
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc--CCCEEEEcCCCCCCC
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRG 376 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~--~~DGIilpGG~g~~~ 376 (498)
+|+++| |+.. .-.+|.++|+..|+.+.+. +.+. ++ +.+. ++|||||||||+...
T Consensus 12 ~IlIID-~G~~--~t~~I~r~lrelgv~~~v~------p~~~--------~~-------~~i~~~~~dgIILsGGP~sv~ 67 (536)
T PLN02347 12 VVLILD-YGSQ--YTHLITRRVRELGVYSLLL------SGTA--------SL-------DRIASLNPRVVILSGGPHSVH 67 (536)
T ss_pred EEEEEE-CCCc--HHHHHHHHHHHCCCeEEEE------ECCC--------CH-------HHHhcCCCCEEEECCCCCccc
Confidence 799997 7721 3368999999999877654 2221 11 2332 689999999998652
Q ss_pred ch---h-HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 377 VQ---G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 377 ~~---g-~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
.. . ....++.+.+.++|+||||+|||+|+.++||++.+.
T Consensus 68 ~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~ 110 (536)
T PLN02347 68 VEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPG 110 (536)
T ss_pred ccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEec
Confidence 11 1 123455666779999999999999999999999753
No 52
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.26 E-value=2.9e-11 Score=117.31 Aligned_cols=85 Identities=27% Similarity=0.382 Sum_probs=61.3
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
+||+||| |+ .+ +..|+.++|++.|+++. +.|+.. | +.+.++|+|||||+....
T Consensus 2 ~~~~iid-~g-~g-n~~s~~~al~~~g~~~~----v~~~~~-----------~-------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAIID-YG-SG-NLRSAAKALERAGAGAD----VVVTAD-----------P-------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEEE-CC-CC-hHHHHHHHHHHcCCCcc----EEEECC-----------H-------HHhcCCCEEEECCCCcHHHH
Confidence 5899997 98 55 77999999999998642 334432 2 567899999999964321
Q ss_pred --Cc--hhHHHHH-HHHHHcCCCEEeehHHHHHHHHH
Q 010866 376 --GV--QGKILAA-KYAREHRIPYLGICLGMQVAVIE 407 (498)
Q Consensus 376 --~~--~g~i~~i-~~a~e~~iPiLGIClGmQll~va 407 (498)
.+ .+..+.+ +.+.+.++|+||||+|||+|+.+
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~ 93 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFER 93 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhc
Confidence 11 1234444 44456899999999999999964
No 53
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.24 E-value=4e-11 Score=130.65 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=65.2
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc--CCCEEEEcCCCCCCC
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRG 376 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~--~~DGIilpGG~g~~~ 376 (498)
+|+++| |+.. .-.+|.++|+.+|+...+. +.+.. + +.+. ++||||||||+.+..
T Consensus 5 ~i~vlD-~Gsq--~~~li~r~lrelg~~~~v~------p~~~~--------~-------~~l~~~~~dgIIlsGGp~sv~ 60 (511)
T PRK00074 5 KILILD-FGSQ--YTQLIARRVRELGVYSEIV------PYDIS--------A-------EEIRAFNPKGIILSGGPASVY 60 (511)
T ss_pred EEEEEE-CCCC--cHHHHHHHHHHCCCeEEEE------ECCCC--------H-------HHHhccCCCEEEECCCCcccc
Confidence 699997 8722 2357899999999876654 22210 1 2333 469999999998642
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
........+.+.+.++|+||||+|||+|+.++||++..
T Consensus 61 ~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~ 98 (511)
T PRK00074 61 EEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVER 98 (511)
T ss_pred cCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEe
Confidence 22222334556778999999999999999999999864
No 54
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.23 E-value=2.7e-11 Score=132.59 Aligned_cols=96 Identities=15% Similarity=0.300 Sum_probs=66.9
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCc-ceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC-c
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVD-LRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-V 377 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~-~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~-~ 377 (498)
|.+||.|.++. .++.+.|+..|.. +.+ +.+.+.+. +. -....+||||++||||++. .
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~~v~~------~~~~~~~~-------~~-----~~~~~~d~vIlsgGP~~p~~~ 60 (534)
T PRK14607 2 IILIDNYDSFT---YNIYQYIGELGPEEIEV------VRNDEITI-------EE-----IEALNPSHIVISPGPGRPEEA 60 (534)
T ss_pred EEEEECchhHH---HHHHHHHHHcCCCeEEE------ECCCCCCH-------HH-----HHhcCCCEEEECCCCCChhhC
Confidence 78898776433 5899999999975 322 23332211 00 0123689999999999863 2
Q ss_pred hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCC
Q 010866 378 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~ 417 (498)
...++.++. .+.++|+||||+|||+|+.++|+++.+.+.
T Consensus 61 ~~~~~li~~-~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~ 99 (534)
T PRK14607 61 GISVEVIRH-FSGKVPILGVCLGHQAIGYAFGGKIVHAKR 99 (534)
T ss_pred CccHHHHHH-hhcCCCEEEEcHHHHHHHHHcCCeEecCCc
Confidence 234555665 467899999999999999999999986543
No 55
>PRK00784 cobyric acid synthase; Provisional
Probab=99.22 E-value=3e-10 Score=123.10 Aligned_cols=85 Identities=26% Similarity=0.347 Sum_probs=60.7
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHH-cCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~-aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
+++||++. |.... ++ .=+++|+. +|+++.. +.+. +.+.++|+|+||||+...
T Consensus 251 ~~~i~v~~-~~~a~-~f-~nl~~l~~~~g~~v~~------~s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVIR-LPRIS-NF-TDFDPLRAEPGVDVRY------VRPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEEe-CCCcC-Cc-cChHHHhhcCCCeEEE------ECCc------------------cccccCCEEEECCccchH
Confidence 58999995 55332 33 44678887 8876543 3331 245689999999998542
Q ss_pred -C-----chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 376 -G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 376 -~-----~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
. ..+..+.++.+.++++|+||||.|||+|+-.+
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 1 13467788888899999999999999999544
No 56
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.21 E-value=3.3e-10 Score=122.58 Aligned_cols=307 Identities=19% Similarity=0.237 Sum_probs=155.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCC---------Ccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDL---------GNY 74 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDl---------G~Y 74 (498)
||||| .-|+.||=++++.|.+.|+.+|++|...|== .|+= ..+|+.||.|.|-.. -.+
T Consensus 1 ~~I~G-T~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~--------~~~~----~s~~~~~~~e~~~a~~~qa~a~~~~~~ 67 (475)
T TIGR00313 1 IMVVG-TTSSAGKSTLTAGLCRILARRGYRVAPFKSQ--------NMSL----NSFVTKEGGEIAIAQATQALAAGIEPS 67 (475)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHHhCCCeEEEECCc--------cccc----CccccCCCchhHHHHHHHHHhCCCCch
Confidence 57775 5699999999999999999999999988832 1211 245666776653110 011
Q ss_pred ccccCCCCCCCCc-----ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCc
Q 010866 75 ERFMDIKLTRDNN-----ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGG 149 (498)
Q Consensus 75 eRf~~~~l~~~~n-----~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGG 149 (498)
++.--+-+....+ +..|+.+.....++ |.... .+..-+.|++.+.+++ .++|++|||=.|
T Consensus 68 ~~~nPv~lk~~~~~~s~~i~~g~~~~~~~a~~----~~~~~---~~~~~~~i~~~~~~l~--------~~~D~vIIEGaG 132 (475)
T TIGR00313 68 VHMNPILLKPKGNFTSQVIVHGRAVGDMNYQE----YYKNK---VDFFLKAIKESLEILA--------REYDYVVIEGAG 132 (475)
T ss_pred hccCCEEeCcCCCCcCcEEEcCcccCcCCHHH----Hhhhh---hHHHHHHHHHHHHHHH--------hcCCEEEEECCC
Confidence 2211111111100 11122111111111 11101 1233466777777765 368999999888
Q ss_pred ccccc----CcchHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcC-CCcccEEEEecCCCCCc
Q 010866 150 TIGDI----ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQ-GLTPNILACRSTVALDD 224 (498)
Q Consensus 150 TvGdi----Es~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~-GI~pd~lV~Rs~~~l~s 224 (498)
..-|+ +.....+.++.+.. .++.| --+...+-+ --+-+.++.++.. ++...++|+-...+-..
T Consensus 133 Gl~~~~~~~~d~s~~~lA~~l~a-----pVILV-----~d~~~g~~~--a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~ 200 (475)
T TIGR00313 133 SPAEINLLKRDLANMRIAELANA-----DAILV-----ADIDRGGVF--ASIYGTLKLLPENWRKLIKGIVINKFRGNVD 200 (475)
T ss_pred CccccccCcCCchHHHHHHHhCC-----CEEEE-----EeCCccHHH--HHHHHHHHHhChhhcCceEEEEEeccCCcHH
Confidence 77663 12233444444432 24444 111111111 1233444444543 36778888865443211
Q ss_pred chhcccCccCCCCCCCeeecC-CCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhc-CCCCCeEEEE
Q 010866 225 NVKGKLSQFCHVPEQNIITLY-DVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICD-GLHEPVRIAM 302 (498)
Q Consensus 225 ~~r~KisLf~~v~~~~Vi~i~-dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~-~~~~~v~IaI 302 (498)
..+..+........-.|++.. -.++. +|. .++.++...+. .....++||+
T Consensus 201 ~~~~~~~~l~e~~gipvLG~ip~~~~l--l~~--------------------------~e~~~~~~~~~~~~~~~~~Iav 252 (475)
T TIGR00313 201 VLKSGIEKLEELTGIPVLGVLPYDENL--FPE--------------------------EDSLVIQERRSRGNAKSIRIGV 252 (475)
T ss_pred HHHHHHHHHHHhhCCCEEEEecCCCcC--CCh--------------------------HHhhhHHhhhccCCCCCcEEEE
Confidence 112111100000001122221 00111 111 01111111110 1122489999
Q ss_pred EcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-C-----
Q 010866 303 VGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G----- 376 (498)
Q Consensus 303 VgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-~----- 376 (498)
+- |.... ++. =.++|+.. + .+.|++.. +.+.++|+|+||||+... .
T Consensus 253 ~~-~~~~~-nf~-~~~~L~~~--~-----~~~f~~~~------------------~~l~~~d~lilpGg~~~~~~~~~l~ 304 (475)
T TIGR00313 253 VR-LPRIS-NFT-DFEPLRYE--A-----FVKFLDLD------------------DSLTGCDAVIIPGSKSTIADLYALK 304 (475)
T ss_pred Ec-CCccc-Ccc-ChHHHhhC--C-----CeEEeCCc------------------cccccCCEEEECCcchHHHHHHHHH
Confidence 94 44332 222 36677766 2 23465532 245689999999998542 1
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
..+..+.|+.+.+.+.|+||||.|||+|.-
T Consensus 305 ~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 305 QSGFAEEILDFAKEGGIVIGICGGYQMLGK 334 (475)
T ss_pred hcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence 134678899888999999999999999984
No 57
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.19 E-value=6.4e-11 Score=113.00 Aligned_cols=86 Identities=24% Similarity=0.232 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-C----------------
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-G---------------- 376 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-~---------------- 376 (498)
.++.++|+.+|+.+.+. +..... ......+..+||||||||++.. .
T Consensus 22 ~~~~~~l~~~G~~~~iv------~~~~~~-----------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVLL------PPVDDE-----------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEEe------CCCCCh-----------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 57899999999876553 221100 0111346789999999998531 1
Q ss_pred -chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 377 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 377 -~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
.....+.++++.+.++|+||||+|||+|+.++|+++.+.+
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~ 125 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI 125 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC
Confidence 0134678888989999999999999999999999997644
No 58
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.19 E-value=5.5e-11 Score=117.57 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=47.2
Q ss_pred hccCCCEEEEcCCCCCC-----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
.+.++||||++||+... -.....+.++.+.+.++|+||||+|||+|+.++|+++.+
T Consensus 51 ~~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~ 111 (237)
T PRK09065 51 APDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGY 111 (237)
T ss_pred ChhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCcccc
Confidence 35678999999999753 124567788999999999999999999999999999863
No 59
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.18 E-value=1.1e-10 Score=112.27 Aligned_cols=83 Identities=30% Similarity=0.393 Sum_probs=62.1
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCC-CC-
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG- 376 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~-~~- 376 (498)
+|+++| |+ .+ +-.++.++|+..|+++.+. .. + +.+.++|+||+|||... ..
T Consensus 1 ~i~~~d-~~-~~-~~~~i~~~l~~~G~~v~~~------~~-----------~-------~~l~~~d~iiipG~~~~~~~~ 53 (205)
T PRK13141 1 MIAIID-YG-MG-NLRSVEKALERLGAEAVIT------SD-----------P-------EEILAADGVILPGVGAFPDAM 53 (205)
T ss_pred CEEEEE-cC-Cc-hHHHHHHHHHHCCCeEEEE------CC-----------H-------HHhccCCEEEECCCCchHHHH
Confidence 378886 87 33 4589999999999877653 11 1 45678999999985321 11
Q ss_pred ----chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 377 ----~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
..+..+.++.+.++++|+||||+|||+|+.++
T Consensus 54 ~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~ 89 (205)
T PRK13141 54 ANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESS 89 (205)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhcc
Confidence 12567788888889999999999999999764
No 60
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.16 E-value=2.7e-10 Score=109.62 Aligned_cols=84 Identities=29% Similarity=0.390 Sum_probs=63.5
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
+||.|++ |+ .+ +-.++.++|+.+|+++.+. +. + +.+.++|+|++|||....
T Consensus 1 ~~~~v~~-~~-~~-~~~~~~~~l~~~G~~~~~~------~~-----------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVIID-YG-VG-NLRSVSKALERAGAEVVIT------SD-----------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEEE-CC-Cc-cHHHHHHHHHHCCCeEEEE------CC-----------H-------HHHccCCEEEECCCCCHHHH
Confidence 4789996 86 44 5589999999999876553 11 1 356789999999854322
Q ss_pred --CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 376 --~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
......+.++++.++++|+||||+|+|+|+.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~ 88 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESS 88 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 224567788889999999999999999999654
No 61
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.15 E-value=2.6e-10 Score=107.67 Aligned_cols=96 Identities=21% Similarity=0.150 Sum_probs=68.4
Q ss_pred hccCCCEEEEcCCCCCC---C---chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCCCCCCee
Q 010866 359 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 432 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~---~---~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~~~~~vi 432 (498)
.+.++||||+|||+... . .....+.++++.++++|+||||+|||+++.++|+++...+.+
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~-------------- 108 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKG-------------- 108 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCc--------------
Confidence 46789999999998754 1 245678889999999999999999999999999988642211
Q ss_pred eeCCCCccCcCCcccccCcEeEEEeeCchHHHHhhC--CCeeEEecccccccc
Q 010866 433 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLFI--CGFNYVEIIISKANM 483 (498)
Q Consensus 433 ~l~~e~~~~~~G~tmrlG~~~v~i~~g~S~l~~iYg--~~~i~vnslh~q~~~ 483 (498)
...|.+++.+.+. .....+++ .+.+.++..|++++.
T Consensus 109 --------------~~~g~~~v~~~~~-~~~~~l~~~~~~~~~v~~~H~~~v~ 146 (188)
T cd01741 109 --------------WEIGWFPVTLTEA-GKADPLFAGLPDEFPVFHWHGDTVV 146 (188)
T ss_pred --------------ceeEEEEEEeccc-cccCchhhcCCCcceEEEEeccChh
Confidence 0224456666554 22223332 256788888888875
No 62
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=99.13 E-value=3.7e-12 Score=115.40 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHH
Q 010866 202 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIF 267 (498)
Q Consensus 202 k~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il 267 (498)
.++||.++++.++|||+.++.|+||+++.+|..||++++|++|.+|||| +|+++||++|.|+++|
T Consensus 66 ~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~~G~m~g~I 130 (131)
T PF00988_consen 66 EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLREKGSMKGVI 130 (131)
T ss_dssp GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHHH--EEEEE
T ss_pred ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHhcCCceEEE
Confidence 3489999999999999999999999999999999999999999999999 9999999999998765
No 63
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.12 E-value=2.6e-10 Score=113.12 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=73.4
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~ 376 (498)
+++|.++-.|. .. .-.++.+.|+..|.++.+. ....++ ..| +.+.++||+|++||++...
T Consensus 7 ~~~vlvi~h~~-~~-~~g~l~~~l~~~g~~~~v~----~~~~~~-------~~p-------~~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 7 KRPVLIVLHQE-RS-TPGRVGQLLQERGYPLDIR----RPRLGD-------PLP-------DTLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CceEEEEecCC-CC-CChHHHHHHHHCCCceEEE----eccCCC-------CCC-------CcccccCEEEEECCCCCCC
Confidence 56888886665 22 3457888999999877654 111111 012 3467899999999998641
Q ss_pred -----chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccC
Q 010866 377 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 416 (498)
Q Consensus 377 -----~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk 416 (498)
+....+.++.+.+.++|+||||+|||+|+.++||+|.+.+
T Consensus 67 d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~ 111 (239)
T PRK06490 67 DPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHP 111 (239)
T ss_pred CCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCC
Confidence 2446678888899999999999999999999999998654
No 64
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.10 E-value=9.1e-10 Score=120.66 Aligned_cols=85 Identities=22% Similarity=0.372 Sum_probs=65.5
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~ 376 (498)
..+|+++| |+ .+ +-.|+.++|+.+|+++.+. .. | +.+..+|+|||||+.....
T Consensus 6 ~~~i~iiD-yG-~G-N~~sl~~al~~~G~~v~~v------~~-----------~-------~~l~~~D~lIlpG~gs~~~ 58 (538)
T PLN02617 6 DSEVTLLD-YG-AG-NVRSVRNAIRHLGFTIKDV------QT-----------P-------EDILNADRLIFPGVGAFGS 58 (538)
T ss_pred CCeEEEEE-CC-CC-CHHHHHHHHHHCCCeEEEE------CC-----------h-------hhhccCCEEEECCCCCHHH
Confidence 46899997 98 55 7899999999999876432 21 1 4568899999998543211
Q ss_pred ------chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 377 ------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 377 ------~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
..+..+.++.+.+.++|+||||+|||+|+.++
T Consensus 59 ~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 59 AMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESS 96 (538)
T ss_pred HHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 13467788888899999999999999999765
No 65
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.07 E-value=2.5e-10 Score=109.18 Aligned_cols=80 Identities=33% Similarity=0.488 Sum_probs=61.4
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC---
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~--- 376 (498)
|+|+| |+ .+ +-.++.++|+.+|+++.+. +.. +.+.++|+|++||| +.+.
T Consensus 1 i~i~d-~g-~~-~~~~~~~~l~~~g~~v~v~------~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAIID-YG-MG-NLRSVANALERLGAEVIIT------SDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEEe-CC-CC-hHHHHHHHHHHCCCeEEEE------cCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 56786 87 43 6789999999999877764 211 34678999999875 3321
Q ss_pred ----chhHHHHHHHHHHcCCCEEeehHHHHHHHHH
Q 010866 377 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (498)
Q Consensus 377 ----~~g~i~~i~~a~e~~iPiLGIClGmQll~va 407 (498)
..+..+.++.+.++++|+||||+|||+|+.+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFES 87 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence 1246788899988999999999999999976
No 66
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=99.06 E-value=1.1e-08 Score=109.74 Aligned_cols=290 Identities=18% Similarity=0.294 Sum_probs=153.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc-cccCCCCCCCccccceEEEccCCccccCCCCccccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP-YLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMD 79 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp-YlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~ 79 (498)
|+=|||||- =|+.||=.+++.|-+.|+.+|++|...|.-| |+ || ..|. |-.+
T Consensus 1 m~~~~i~~~-~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~i--D~-----~~~~-------------------~~~g 53 (433)
T PRK13896 1 MKGFVLGGT-SSGVGKTVATLATIRALEDAGYAVQPAKAGPDFI--DP-----SHHE-------------------AVAG 53 (433)
T ss_pred CceEEEEeC-CCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCC--CH-----HHHH-------------------HHhC
Confidence 566788875 6999999999999999999999999999877 53 43 3343 2222
Q ss_pred CCCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHHHHHHHHHhcccCCCCCCCccEEEEe-eCccccccCc
Q 010866 80 IKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEIQDWIERVAMIPVDGKEGPVDVCVIE-LGGTIGDIES 156 (498)
Q Consensus 80 ~~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit--~ei~~~i~~~~~~pvd~~~~~~dv~i~E-iGGTvGdiEs 156 (498)
.+. .| +=||.. +.|++...+ ...|++||| .||=. |=+.
T Consensus 54 ~~~---~n-------------------------ld~~~~~~~~i~~~~~~----------~~~d~~vIEG~gGl~-dg~~ 94 (433)
T PRK13896 54 RPS---RT-------------------------LDPWLSGEDGMRRNYYR----------GEGDICVVEGVMGLY-DGDV 94 (433)
T ss_pred CCc---cc-------------------------CChhhCCHHHHHHHHHh----------hcCCEEEEECCCccc-cCCC
Confidence 221 01 112222 224333221 237999999 45543 4332
Q ss_pred chHHHHHHHhhhhcCCCCEEEEEEeeeeeecC-CCccccCCchhhHHHhhc---CCCcccEEEEecCCCC--Cc----ch
Q 010866 157 MPFIEALGQFSYRVGPGNFCLIHVSLVPVLNV-VGEQKTKPTQHSVRGLRG---QGLTPNILACRSTVAL--DD----NV 226 (498)
Q Consensus 157 ~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~-~~e~KtKptQhsvk~Lrs---~GI~pd~lV~Rs~~~l--~s----~~ 226 (498)
.-..+-++++..- ++.| ..+ .|-.---+|=.++.++.. .++.+.++|+-...+- .. ..
T Consensus 95 ~s~adla~~l~~P-----viLV-------v~~~~g~~s~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h~~~l~~~~ 162 (433)
T PRK13896 95 SSTAMVAEALDLP-----VVLV-------VDAKAGMESVAATALGFRAYADRIGRDIDVAGVIAQRAHGGRHADGIRDAL 162 (433)
T ss_pred CCHHHHHHHHCCC-----EEEE-------EcCcccHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHHHHHHHHhh
Confidence 3344555554332 2222 211 121111123333444444 4899999999876541 11 11
Q ss_pred hcccCccCCCCCCCeeecCCCCccchhhHHHH-Hhh----hHHHHHHhcCCCCCCChhhHHHHHHHHhh--h------cC
Q 010866 227 KGKLSQFCHVPEQNIITLYDVPNIWHIPLLLR-DQK----AHEAIFKVLNLQGTTKEPLLKEWTSRAEI--C------DG 293 (498)
Q Consensus 227 r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~Lr-eqG----~~~~il~~l~l~~~~~~~~l~~W~~lv~~--v------~~ 293 (498)
...+..+..++...-+.+ ++| +|-+.-- |.. ..+.+-+.++++. -.++... . ..
T Consensus 163 ~~~i~vlG~lP~~~~~~~---~~R-HLGLv~~~e~~~~~~~~~~~~~~~d~~~---------l~~~a~~~~~~~~~~~~~ 229 (433)
T PRK13896 163 PDELTYFGRIPPRDDLEI---PDR-HLGLHMGSEAPLDDDALDEAAEHIDAER---------LAAVAREPPRPEPPEEAP 229 (433)
T ss_pred hhcCceeEecccCCCCCC---CCC-CcCCCcchhhccHHHHHHHHHHhCCHHH---------HHHHhhCCCCcccccccc
Confidence 112334444444333322 344 3322111 100 0011112222210 0011000 0 01
Q ss_pred CCCCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCC
Q 010866 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (498)
Q Consensus 294 ~~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g 373 (498)
...+++||+--+- .+.=-|..-+++|+.+ +++.- ..+ +.+ +.+.++|+|+||||+.
T Consensus 230 ~~~~~~iavA~D~-AF~FyY~enl~~L~~~-aelv~------fSP--l~~--------------~~lp~~D~l~lpGG~~ 285 (433)
T PRK13896 230 ATGDPTVAVARDA-AFCFRYPATIERLRER-ADVVT------FSP--VAG--------------DPLPDCDGVYLPGGYP 285 (433)
T ss_pred CCCCCeEEEEEcC-ccceeCHHHHHHHHhc-CcEEE------EcC--CCC--------------CCCCCCCEEEeCCCch
Confidence 1123789997432 1222466678888887 55432 222 111 2355789999999996
Q ss_pred CC---Cc--hhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 374 NR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 374 ~~---~~--~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.- .+ .+..+.++.+.+++.|++|||-|||+|.
T Consensus 286 e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~ 322 (433)
T PRK13896 286 ELHADALADSPALDELADRAADGLPVLGECGGLMALA 322 (433)
T ss_pred hhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhh
Confidence 52 11 2345888888899999999999999998
No 67
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.05 E-value=3.4e-10 Score=124.00 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=66.1
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCCCCCC
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG~g~~ 375 (498)
.+|.+||.|.++. +++.+.|+..|+.+.|. .+..+.+. ..+.+ .++|+|||+||||.+
T Consensus 2 ~~iLiIDn~dsft---~nl~~~lr~~g~~v~V~---~~~~~~~~--------------~~~~l~~~~~~~IIlSpGPg~p 61 (531)
T PRK09522 2 ADILLLDNIDSFT---YNLADQLRSNGHNVVIY---RNHIPAQT--------------LIERLATMSNPVLMLSPGPGVP 61 (531)
T ss_pred CeEEEEeCCChHH---HHHHHHHHHCCCCEEEE---ECCCCCcc--------------CHHHHHhcCcCEEEEcCCCCCh
Confidence 4799999666332 47899999999877664 11101000 01233 357899999999998
Q ss_pred CchhHH-HHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 376 GVQGKI-LAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 376 ~~~g~i-~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
...+.. +.+++ ...++|+||||+|||+|+.+||+++.+.
T Consensus 62 ~d~~~~~~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~ 101 (531)
T PRK09522 62 SEAGCMPELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQA 101 (531)
T ss_pred hhCCCCHHHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeC
Confidence 432222 33333 3458999999999999999999999854
No 68
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.05 E-value=5.8e-10 Score=106.68 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=66.5
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
++|+|+.-.+ +|.+..++|+.+|..+... +. | +.+.++|||++|||++..
T Consensus 2 m~~~i~~~~g----~~~~~~~~l~~~g~~~~~~------~~-----------~-------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLALQG----AVREHLAALEALGAEAVEV------RR-----------P-------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEccc----CHHHHHHHHHHCCCEEEEe------CC-----------h-------hHhccCCEEEECCCChHHHH
Confidence 5788887333 8888899999998776543 21 1 456789999999998643
Q ss_pred C---chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcch
Q 010866 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (498)
Q Consensus 376 ~---~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~ 411 (498)
. .....+.++.+.++++|+||||+|+|+|+.++|+.
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~ 92 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGY 92 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccC
Confidence 1 12345778899999999999999999999999884
No 69
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.04 E-value=7.7e-10 Score=107.09 Aligned_cols=101 Identities=25% Similarity=0.307 Sum_probs=67.5
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcC-CcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG-~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
+|.|++ ++. .-..-|.+.++..| ....+. .| ..+.+. ....++|||||+|||-+.
T Consensus 3 ~ilIld-~g~--q~~~li~r~~re~g~v~~e~~---~~--~~~~~~--------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILILD-FGG--QYLGLIARRLRELGYVYSEIV---PY--TGDAEE--------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEEe-CCC--cHhHHHHHHHHHcCCceEEEE---eC--CCCccc--------------ccccCCCEEEEcCCCCCCcc
Confidence 688886 652 24456889999888 444332 11 111100 123467999999999653
Q ss_pred -C--chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccC
Q 010866 376 -G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 424 (498)
Q Consensus 376 -~--~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~ 424 (498)
. .....+.|+.+...++|+||||+|||+|+.++|++|.. ++..|++
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~---~~~~E~G 109 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVER---GPKREIG 109 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEec---cCCCccc
Confidence 3 44556667776666777999999999999999999974 3335664
No 70
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.03 E-value=7.8e-10 Score=126.82 Aligned_cols=100 Identities=20% Similarity=0.303 Sum_probs=69.2
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHc-CCcceeeeEEEEecCCCccccccCCChhhhHHHHH---hccCCCEEEEcCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK---LLKGADGILVPGGF 372 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~a-G~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~---~l~~~DGIilpGG~ 372 (498)
.++|.+||.|.++. +++.+.|+.. |..+.+. ..+++. +.+... .+..+|+|||+|||
T Consensus 81 ~~~iLlIDnyDSfT---yNL~~~L~~~~g~~~~Vv------~nd~~~----------~~~~~~~~~~~~~~d~IVlSPGP 141 (918)
T PLN02889 81 FVRTLLIDNYDSYT---YNIYQELSIVNGVPPVVV------RNDEWT----------WEEVYHYLYEEKAFDNIVISPGP 141 (918)
T ss_pred cceEEEEeCCCchH---HHHHHHHHHhcCCCEEEE------eCCCCC----------HHHHHhhhhcccCCCEEEECCCC
Confidence 47999999997543 5789999888 8776553 222221 111111 13578999999999
Q ss_pred CCCCch---h-HHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCC
Q 010866 373 GNRGVQ---G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 417 (498)
Q Consensus 373 g~~~~~---g-~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~ 417 (498)
|.|... + ..+.++.+ .++|+||||||||+|+.+||+++.+++.
T Consensus 142 G~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~ 188 (918)
T PLN02889 142 GSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPE 188 (918)
T ss_pred CCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCC
Confidence 998432 2 12333322 4799999999999999999999987654
No 71
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.03 E-value=8.9e-10 Score=108.97 Aligned_cols=96 Identities=21% Similarity=0.162 Sum_probs=69.9
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC---
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~--- 375 (498)
+|.++- ..... ...++.++|+..|..+.+. .....+.. + ..+.++|+||++||+...
T Consensus 4 ~ilviq-h~~~e-~~g~i~~~L~~~g~~~~v~----~~~~~~~~-------~-------~~~~~~d~lii~Ggp~~~~d~ 63 (234)
T PRK07053 4 TAVAIR-HVAFE-DLGSFEQVLGARGYRVRYV----DVGVDDLE-------T-------LDALEPDLLVVLGGPIGVYDD 63 (234)
T ss_pred eEEEEE-CCCCC-CChHHHHHHHHCCCeEEEE----ecCCCccC-------C-------CCccCCCEEEECCCCCCCCCC
Confidence 577773 44333 5668999999999776653 11111110 0 235679999999998642
Q ss_pred ----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 376 ----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
-+....+.++.+.+.++|+||||+|||+|+.++|++|..
T Consensus 64 ~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~ 106 (234)
T PRK07053 64 ELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYP 106 (234)
T ss_pred CcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEec
Confidence 235677889999999999999999999999999999975
No 72
>PRK05665 amidotransferase; Provisional
Probab=99.03 E-value=3.2e-09 Score=105.54 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=48.2
Q ss_pred hccCCCEEEEcCCCCCC-----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhccc
Q 010866 359 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNL 415 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~l 415 (498)
.+.++||+|++||+.+. -+....+.++.+.++++|+||||+|||+|+.|+||+|.+-
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~ 115 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERA 115 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeC
Confidence 45679999999998763 2345677888888999999999999999999999999753
No 73
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.01 E-value=1.7e-09 Score=107.36 Aligned_cols=56 Identities=20% Similarity=0.171 Sum_probs=44.1
Q ss_pred hccCCCEEEEcCCCCCCCc------------h-hHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 359 LLKGADGILVPGGFGNRGV------------Q-GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~~~------------~-g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
.+.++||||++||+.+... . ...++++.+.+.++|+||||+|||+|+.++||++.+
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~ 116 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR 116 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec
Confidence 4567899999999975411 1 123456666789999999999999999999999964
No 74
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.00 E-value=1.2e-09 Score=104.99 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-----CchhHHHHHHHHH
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAR 388 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~ 388 (498)
.++.++|+.+|.++.+. ++.. | +.+.++|+|++|||++.. ...+..+.++.+.
T Consensus 17 ~~~~~~l~~~g~~~~~~----~~~~-----------~-------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~ 74 (200)
T PRK13527 17 DALKRALDELGIDGEVV----EVRR-----------P-------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKI 74 (200)
T ss_pred HHHHHHHHhcCCCeEEE----EeCC-----------h-------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHH
Confidence 47788999999766543 3221 1 456789999999998763 2234678889888
Q ss_pred HcCCCEEeehHHHHHHHHHhcch
Q 010866 389 EHRIPYLGICLGMQVAVIEFARS 411 (498)
Q Consensus 389 e~~iPiLGIClGmQll~va~g~~ 411 (498)
+.++|+||||+|||+|+.++|+.
T Consensus 75 ~~~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 75 EEGLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HCCCeEEEECHHHHHHHhhhcCC
Confidence 89999999999999999999883
No 75
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.98 E-value=1.2e-09 Score=104.27 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=63.5
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC---
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~--- 375 (498)
||+++.=+ .++.+..++|+++|+++.+. .+ | +.+.++|+|++|||++..
T Consensus 1 ~igvl~~q----g~~~e~~~~l~~~g~~~~~v------~~-----------~-------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLALQ----GAVREHARALEALGVEGVEV------KR-----------P-------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEEcc----CCHHHHHHHHHHCCCEEEEE------CC-----------h-------HHhccCCEEEECCCCHHHHHH
Confidence 46776523 38889999999999876543 22 1 457789999999998653
Q ss_pred --CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 376 --~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
...+....++.+.+.++|+||||.|||+|+-++
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~ 87 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEI 87 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhh
Confidence 123566788889999999999999999999887
No 76
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.95 E-value=7.9e-09 Score=101.57 Aligned_cols=90 Identities=27% Similarity=0.499 Sum_probs=64.4
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
+||+|++ |.... ...++.++|+.+|+.+... |... ..+.++|+|+||||+...
T Consensus 1 ~~v~Vl~-~~G~n-~~~~~~~al~~~G~~~~~i----~~~~-------------------~~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVIR-FPGTN-CDRDTVYALRLLGVDAEIV----WYED-------------------GSLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEEe-CCCcC-cHHHHHHHHHHCCCeEEEE----ecCC-------------------CCCCCCCEEEECCCCccccc
Confidence 4799996 64222 3467889999999876543 3221 125679999999998531
Q ss_pred ---C----chhHHHHHHHHHHcCCCEEeehHHHHHHHHH--hcchh
Q 010866 376 ---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSV 412 (498)
Q Consensus 376 ---~----~~g~i~~i~~a~e~~iPiLGIClGmQll~va--~g~~v 412 (498)
+ .....+.++.+.+.++|++|||.|+|+|+.+ +++++
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l 101 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGAL 101 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCce
Confidence 1 1335677888889999999999999999974 55544
No 77
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.92 E-value=2.7e-09 Score=101.87 Aligned_cols=80 Identities=13% Similarity=0.197 Sum_probs=61.4
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC--
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-- 375 (498)
+||+++.-+| +...-.+||++.|+++.+. ++| +.+.++|+|+||||++..
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~v-----------------~~~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKLV-----------------KFN-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEEE-----------------CCH-------HHHhCCCEEEECCChHHHHH
Confidence 6899998555 5566889999999875443 122 567899999999997753
Q ss_pred C---chhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 376 G---VQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 376 ~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
. ..+..+.++.+.+ ++|++|||.|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 1 2457788888765 6899999999999995
No 78
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=98.90 E-value=4.6e-09 Score=100.83 Aligned_cols=80 Identities=26% Similarity=0.384 Sum_probs=58.2
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC---
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~--- 376 (498)
|+|+| |+ .+ +-.++.++|+..|+++.+. .. + +.++++|+|++||+ +++.
T Consensus 1 ~~~~~-~~-~g-n~~~l~~~l~~~g~~v~v~------~~-----------~-------~~l~~~d~lii~G~-~~~~~~~ 52 (196)
T TIGR01855 1 IVIID-YG-VG-NLGSVKRALKRVGAEPVVV------KD-----------S-------KEAELADKLILPGV-GAFGAAM 52 (196)
T ss_pred CEEEe-cC-Cc-HHHHHHHHHHHCCCcEEEE------cC-----------H-------HHhccCCEEEECCC-CCHHHHH
Confidence 57786 76 33 7789999999999887764 21 1 35678999999883 3321
Q ss_pred --chhH-HHHH-HHHHHcCCCEEeehHHHHHHHHH
Q 010866 377 --VQGK-ILAA-KYAREHRIPYLGICLGMQVAVIE 407 (498)
Q Consensus 377 --~~g~-i~~i-~~a~e~~iPiLGIClGmQll~va 407 (498)
+... .+.+ +.+.+.++|+||||+|||+|+-+
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFER 87 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence 1111 3444 77788899999999999999988
No 79
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5.9e-09 Score=111.72 Aligned_cols=98 Identities=26% Similarity=0.357 Sum_probs=70.0
Q ss_pred CCeEEEEEcccCCccchH-HHHHHHHHHc-CCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc---CCCEEEEcC
Q 010866 296 EPVRIAMVGKYTGLSDAY-LSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK---GADGILVPG 370 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day-~SI~~AL~~a-G~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~---~~DGIilpG 370 (498)
.++++.++|.|. +| .++.++|..+ +..+.+.+...|..+ ++|+.+. .+|+|++.+
T Consensus 13 ~rl~~LlID~YD----SyTfNiy~ll~~~~~vp~V~~vh~~~~~~----------------d~~~~l~q~~~FDaIVVgP 72 (767)
T KOG1224|consen 13 PRLRTLLIDNYD----SYTFNIYQLLSTINGVPPVVIVHDEWTWE----------------DAYHYLYQDVAFDAIVVGP 72 (767)
T ss_pred hheeEEEEeccc----chhhhHHHHHHHhcCCCcEEEEeccccCH----------------HHHHHHhhccccceEEecC
Confidence 358999999887 44 4788888866 455555555556443 2344444 489999999
Q ss_pred CCCCCCchhHHHHHHHHHH--cCCCEEeehHHHHHHHHHhcchhc
Q 010866 371 GFGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVL 413 (498)
Q Consensus 371 G~g~~~~~g~i~~i~~a~e--~~iPiLGIClGmQll~va~g~~v~ 413 (498)
|||.|.....+-.+.+..+ +.+|+||||||+|.|+++.|+++.
T Consensus 73 GPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~ 117 (767)
T KOG1224|consen 73 GPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVV 117 (767)
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhccccee
Confidence 9999944333333333332 369999999999999999999986
No 80
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.87 E-value=2.2e-08 Score=98.10 Aligned_cols=85 Identities=26% Similarity=0.453 Sum_probs=61.6
Q ss_pred eEEEEEcccCCccchHHHHHHHHH-HcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~-~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
+||+|+. |.... +-.++.+||+ .+|+++... |... ..+.++|+|+||||++..
T Consensus 1 ~~v~Vl~-~~G~n-~~~d~~~a~~~~~G~~~~~v----~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVIV-FPGSN-CDRDMARALRDLLGAEPEYV----WHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEEe-cCCcC-hHHHHHHHHHhcCCCeEEEE----ecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 4789996 64332 4578899999 888765432 3211 246688999999998531
Q ss_pred --------CchhHHHHHHHHHHcCCCEEeehHHHHHHHHH
Q 010866 376 --------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (498)
Q Consensus 376 --------~~~g~i~~i~~a~e~~iPiLGIClGmQll~va 407 (498)
......++++.+.++++|++|||.|+|+|+-+
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~ 95 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEA 95 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 12345677888888999999999999999964
No 81
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.85 E-value=1.1e-08 Score=104.98 Aligned_cols=108 Identities=25% Similarity=0.406 Sum_probs=76.6
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcC--CCCCC--
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG--GFGNR-- 375 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpG--G~g~~-- 375 (498)
+-++| |+ .+ +.+|+.+||+|.|+.+... ..| .++.++|.+|+|| .||..
T Consensus 4 v~~ld-~~-ag-n~~si~nal~hlg~~i~~v-----------------~~P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLLD-YG-AG-NVRSIRNALRHLGFSIKDV-----------------QTP-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEEe-cC-Cc-cHHHHHHHHHhcCceeeec-----------------cCc-------hhhccCceEeecCcccchHHHH
Confidence 55665 86 44 8899999999999987543 122 4678899999999 34432
Q ss_pred --CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcccCCCCCCccCCC-----CCCCeeeeCCC-CccCcCCcc
Q 010866 376 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGGT 446 (498)
Q Consensus 376 --~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~lk~~~s~E~~~~-----~~~~vi~l~~e-~~~~~~G~t 446 (498)
...|..+.+++..++++|++|||+|+|+|. ..|.|..+. .+.-+-++..+ ..+||+||+
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF------------~gSvE~p~skGLgvipg~v~RFD~s~k~VPhIGWN 123 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQALF------------DGSVENPPSKGLGVIPGIVGRFDASAKIVPHIGWN 123 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh------------cccccCCCcCcccccccceecccCCCCcCCccccc
Confidence 236788999999999999999999999987 334443222 23444444433 348999985
No 82
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.81 E-value=1.7e-08 Score=101.60 Aligned_cols=90 Identities=27% Similarity=0.393 Sum_probs=61.6
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCC--
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-- 374 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~-- 374 (498)
++||+|+- +-... .-.+..+||+++|+.+.+. |+. ++.. .+ ..+.++|+|++||||+.
T Consensus 3 ~~kvaVl~-~pG~n-~d~e~~~Al~~aG~~v~~v----~~~--~~~~-----~~-------~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVLR-MEGTN-CEDETVKAFRRLGVEPEYV----HIN--DLAA-----ER-------KSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEEe-CCCCC-CHHHHHHHHHHCCCcEEEE----eec--cccc-----cc-------cchhhCCEEEECCCCCccc
Confidence 46899996 53232 2357789999999886543 332 1111 01 24678999999999853
Q ss_pred C---C------c-hhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 375 R---G------V-QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 375 ~---~------~-~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
. + + ....++++.+.++++|+||||+|+|+|+-
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~ 104 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE 104 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH
Confidence 1 1 1 11236788999999999999999999994
No 83
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.80 E-value=2.4e-08 Score=98.74 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=46.6
Q ss_pred hccCCCEEEEcCCCCCCC--------c--hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 359 LLKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~~--------~--~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
.+.++||||++||+.... + ....+.++.+.+.++|+||||+|+|+|+.++||+|..
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~ 107 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEH 107 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceecc
Confidence 356799999999986521 1 2456788889899999999999999999999999974
No 84
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.79 E-value=1.8e-08 Score=101.93 Aligned_cols=82 Identities=27% Similarity=0.364 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC----CchhHHHHHHHHHH
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR----GVQGKILAAKYARE 389 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~----~~~g~i~~i~~a~e 389 (498)
.|.+++++.+|+.+.. .+++++. + ...+.+..+||||+|||+-+. -.......++.|++
T Consensus 23 ~~Yv~~l~~aG~~vvp----i~~~~~~---~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~ 85 (273)
T cd01747 23 ASYVKFLESAGARVVP----IWINESE---E----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALE 85 (273)
T ss_pred HHHHHHHHHCCCeEEE----EEeCCcH---H----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHH
Confidence 3678999999987553 3445321 0 112457889999999997542 12333445566665
Q ss_pred cC-----CCEEeehHHHHHHHHHhcchh
Q 010866 390 HR-----IPYLGICLGMQVAVIEFARSV 412 (498)
Q Consensus 390 ~~-----iPiLGIClGmQll~va~g~~v 412 (498)
.+ +|+||||||||+|+.++|+++
T Consensus 86 ~~~~g~~~Pv~GiClG~QlL~~~~gg~~ 113 (273)
T cd01747 86 RNDAGDYFPVWGTCLGFELLTYLTSGET 113 (273)
T ss_pred hhhcCCCCcEEEEcHHHHHHHHHhCCCc
Confidence 54 899999999999999999875
No 85
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.78 E-value=1.3e-08 Score=97.68 Aligned_cols=83 Identities=28% Similarity=0.289 Sum_probs=62.7
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC----
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---- 375 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~---- 375 (498)
|+++. |+..+ |+.|+.++++..|+++.+. ++. +.+.++|+|+||||+...
T Consensus 1 ~~~~~-y~~~g-N~~~l~~~~~~~G~~~~~~------~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVIR-YPDIS-NFTDLDPLAREPGVDVRYV------EVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEeec-CCCcc-CHHHHHHHHhcCCceEEEE------eCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 46664 87666 8999999999999876543 321 125678999999998432
Q ss_pred C--chhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 376 G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 376 ~--~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
. .....+.++.+.++++|+||||.|||+|+-.+
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence 1 23467788888899999999999999998544
No 86
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.72 E-value=5e-08 Score=95.78 Aligned_cols=84 Identities=26% Similarity=0.505 Sum_probs=63.3
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc-CCCEEEEcCCCCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR 375 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~-~~DGIilpGG~g~~ 375 (498)
++||||+- +-... +..-+..|++++|.++... |..- ..+. ++|+|++||||..-
T Consensus 2 ~~kvaVi~-fpGtN-~d~d~~~A~~~aG~~~~~V----~~~d-------------------~~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVLR-FPGTN-CDYDMAAAFERAGFEAEDV----WHSD-------------------LLLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEEE-cCCcC-chHHHHHHHHHcCCCceEE----Eeee-------------------cccCCCccEEEEcCCCCcc
Confidence 47899995 64333 5677889999999987754 5431 1234 69999999999652
Q ss_pred -----C----chhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 376 -----G----VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 376 -----~----~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
+ ....++.++.+.+.++|+||||-|+|+|.
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~ 95 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS 95 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH
Confidence 2 24566778888889999999999999999
No 87
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=98.70 E-value=4.3e-08 Score=92.12 Aligned_cols=93 Identities=17% Similarity=0.309 Sum_probs=67.2
Q ss_pred EEEEEcccCCccchHHHHHHHH-HHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 299 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL-~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
.|.++|.|.++. +++.+.| -..|+.+.|. .-++++.+. -.-.+++++++++|||.|..
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~Vy------RNDeiTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEVY------RNDELTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEEE------ecCcccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 488889898654 6788888 4556666654 333343211 12358999999999999864
Q ss_pred hhH-HHHHHHHHHcCCCEEeehHHHHHHHHHhcchhc
Q 010866 378 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVL 413 (498)
Q Consensus 378 ~g~-i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~ 413 (498)
.|. .++++++. -++|+||||.|.|.|.-+|||++.
T Consensus 79 sGIs~~~i~~f~-~~iP~fGvCMGlQCi~e~fGGkv~ 114 (223)
T KOG0026|consen 79 SGISLQTVLELG-PLVPLFGVCMGLQCIGEAFGGKIV 114 (223)
T ss_pred ccchHHHHHHhC-CCCceeeeehhhhhhhhhhCcEEe
Confidence 443 45666654 589999999999999999999985
No 88
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=98.66 E-value=6.4e-08 Score=95.83 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC---------chh-HH
Q 010866 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 381 (498)
Q Consensus 312 ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~---------~~g-~i 381 (498)
+-.++..+|+.+|+++.+. |+.. .... ...+.++|+|+||||+.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~v----~~~~-~~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAEDV----WHND-LLAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEEE----eccC-Cccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 5578999999999887643 4321 1110 02467899999999985311 112 66
Q ss_pred HHHHHHHHcCCCEEeehHHHHHHHHH--hcchh
Q 010866 382 LAAKYAREHRIPYLGICLGMQVAVIE--FARSV 412 (498)
Q Consensus 382 ~~i~~a~e~~iPiLGIClGmQll~va--~g~~v 412 (498)
+.++.+.++++|+||||.|+|+|+-+ +++.+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~ 105 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGAL 105 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc
Confidence 78899999999999999999999975 55544
No 89
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.66 E-value=5.2e-08 Score=92.59 Aligned_cols=75 Identities=21% Similarity=0.368 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-----CchhHHHHHHH
Q 010866 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 386 (498)
Q Consensus 312 ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-----~~~g~i~~i~~ 386 (498)
++..-.++|+..|+++... .+. +.+.++|||++|||+... ......+.++.
T Consensus 9 ~~~e~~~~l~~~g~~v~~v------~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~ 64 (183)
T cd01749 9 DFREHIRALERLGVEVIEV------RTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLRE 64 (183)
T ss_pred CcHHHHHHHHHCCCeEEEE------CCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHH
Confidence 3445558999998876543 221 347789999999987532 12345677888
Q ss_pred HHHcCCCEEeehHHHHHHHHHhcc
Q 010866 387 AREHRIPYLGICLGMQVAVIEFAR 410 (498)
Q Consensus 387 a~e~~iPiLGIClGmQll~va~g~ 410 (498)
+.+.++|+||||.|||+|+.++++
T Consensus 65 ~~~~g~PvlGiC~G~qlL~~~~~~ 88 (183)
T cd01749 65 FIRAGKPVFGTCAGLILLAKEVED 88 (183)
T ss_pred HHHcCCeEEEECHHHHHHHHHhcc
Confidence 999999999999999999999987
No 90
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.51 E-value=1.9e-07 Score=89.90 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC---Cc---hhHHHHHH
Q 010866 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GV---QGKILAAK 385 (498)
Q Consensus 312 ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~---~~---~g~i~~i~ 385 (498)
-|..-.++|+.+|+++.. +.+.. . +.+.++|+|+||||+... .+ .+..+.++
T Consensus 12 ~y~e~~~~l~~~G~~v~~------~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELVP------FSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEEE------ECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 466778999999976543 23310 0 234469999999986541 12 35678899
Q ss_pred HHHHcCCCEEeehHHHHHHHH
Q 010866 386 YAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 386 ~a~e~~iPiLGIClGmQll~v 406 (498)
.+.++++|++|||.|||||+-
T Consensus 70 ~~~~~g~pilgICgG~qlL~~ 90 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGE 90 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHH
Confidence 989999999999999999994
No 91
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.51 E-value=2.1e-07 Score=100.91 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=52.6
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCC-cceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~-~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
+||+++ +..|+.+|++++|. .+. +.|+.. | +.+.++|+||||||.-..
T Consensus 1 m~iGvl--------al~sv~~al~~lg~~~~~----vv~~~~-----------~-------~~l~~~D~lILPGG~~~~~ 50 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGNLPTK----IIDENN-----------I-------KEIKDLDGLIIPGGSLVES 50 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcCCCcE----EEEeCC-----------h-------HHhccCCEEEECCCchhhc
Confidence 368887 44688999999886 333 345332 2 567899999999985321
Q ss_pred C-c-hhHHHHHHHHHHcCCCEEeehHHHHHHHHH
Q 010866 376 G-V-QGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (498)
Q Consensus 376 ~-~-~g~i~~i~~a~e~~iPiLGIClGmQll~va 407 (498)
+ + .+..++++ +.++|+||||.|||||+-.
T Consensus 51 ~~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 51 GSLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred chHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 1 1 23333343 3489999999999999943
No 92
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=98.35 E-value=4.9e-07 Score=95.85 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=38.4
Q ss_pred cCCCEEEEcCCCCCC---CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 361 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 361 ~~~DGIilpGG~g~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
..+-|||+||||.+- ....... ...+-++|+||||.|||+|+-.+||+|.+
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp---~if~~~vpvLGICYGmQ~i~~~~Gg~V~~ 111 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDP---AIFELGVPVLGICYGMQLINKLNGGTVVK 111 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCCh---hHhccCCcceeehhHHHHHHHHhCCcccc
Confidence 468999999999863 1111111 12345799999999999999999999975
No 93
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.28 E-value=9.1e-07 Score=89.16 Aligned_cols=89 Identities=26% Similarity=0.299 Sum_probs=56.8
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
++||+|+--.| .. .-..+..||+.+|+++... |+ +++-.. + ..+.++|+|++||||+..
T Consensus 1 kpkV~Vl~~pG-tN-ce~e~~~A~~~aG~~~~~v----~~--~dl~~~-----~-------~~l~~~~~lvipGGFS~gD 60 (259)
T PF13507_consen 1 KPKVAVLRFPG-TN-CERETAAAFENAGFEPEIV----HI--NDLLSG-----E-------SDLDDFDGLVIPGGFSYGD 60 (259)
T ss_dssp --EEEEEE-TT-EE-EHHHHHHHHHCTT-EEEEE----EC--CHHHTT-----S---------GCC-SEEEE-EE-GGGG
T ss_pred CCEEEEEECCC-CC-CHHHHHHHHHHcCCCceEE----EE--Eecccc-----c-------CchhhCcEEEECCccCccc
Confidence 36888886344 32 5678999999999987753 22 222110 0 367899999999998642
Q ss_pred ----C--c-------hhHHHHHHHHHHc-CCCEEeehHHHHHHH
Q 010866 376 ----G--V-------QGKILAAKYAREH-RIPYLGICLGMQVAV 405 (498)
Q Consensus 376 ----~--~-------~g~i~~i~~a~e~-~iPiLGIClGmQll~ 405 (498)
+ + ....++++.+.++ +.|+||||-|+|+|.
T Consensus 61 ~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~ 104 (259)
T PF13507_consen 61 YLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV 104 (259)
T ss_dssp TTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC
T ss_pred cchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH
Confidence 1 1 2346778888888 999999999999998
No 94
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.19 E-value=4e-06 Score=80.25 Aligned_cols=84 Identities=25% Similarity=0.444 Sum_probs=63.5
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcC-CcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG-~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
++|+++. ++.+...-.++|+.++ .++. |+. .| +++..+||+|+|||-...
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e~~------~Vk-----------~~-------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAEVV------EVK-----------RP-------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCceE------EEc-----------CH-------HHhccCcEEEecCccHHHH
Confidence 4788887 3335666788888886 4332 332 22 678899999999998763
Q ss_pred ----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhc
Q 010866 376 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFA 409 (498)
Q Consensus 376 ----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g 409 (498)
...+..+.++.+.++++|+||.|-||-+|+-+.-
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~ 90 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEIL 90 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhc
Confidence 2357889999999999999999999999996544
No 95
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=97.96 E-value=2.2e-05 Score=76.28 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=45.9
Q ss_pred HhccCCCEEEEcCCCCCC----C-chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchhcc
Q 010866 358 KLLKGADGILVPGGFGNR----G-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 414 (498)
Q Consensus 358 ~~l~~~DGIilpGG~g~~----~-~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v~~ 414 (498)
+++.++||++++|..-+. . +..+...++.....++|++|||.|||+++-+.|+++-.
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr 116 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR 116 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc
Confidence 567889999999965443 2 23455667777788999999999999999999999853
No 96
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.92 E-value=4.8e-05 Score=61.65 Aligned_cols=76 Identities=28% Similarity=0.337 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC----chhHHHHHHHH
Q 010866 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYA 387 (498)
Q Consensus 312 ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~----~~g~i~~i~~a 387 (498)
.+.+..++|+.+++.+.+. +........ .+....+|++++|||+..+. ....++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDVV------SPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEEE------cCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 4567889999998555443 433221100 02356899999999987752 25678888999
Q ss_pred HHcCCCEEeehHHHHHH
Q 010866 388 REHRIPYLGICLGMQVA 404 (498)
Q Consensus 388 ~e~~iPiLGIClGmQll 404 (498)
.++++|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 99999999999999999
No 97
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.90 E-value=1.1e-05 Score=72.13 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=54.0
Q ss_pred EEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC---
Q 010866 300 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 376 (498)
Q Consensus 300 IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~--- 376 (498)
|++....+....+.+++.++|+... . +..+..+++... .|+ .++|.+|+|||.....
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~------v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~ 61 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-A------VSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRA 61 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-c------eeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHH
Confidence 4444334434446677888888754 2 223345444221 122 5899999999654431
Q ss_pred --chhHHHHHHHHHHcCCCEEeehHHHHHH
Q 010866 377 --VQGKILAAKYAREHRIPYLGICLGMQVA 404 (498)
Q Consensus 377 --~~g~i~~i~~a~e~~iPiLGIClGmQll 404 (498)
..+ .++++.+.++++|+||||+|-=+.
T Consensus 62 L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 62 LNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 134 788888888999999999998765
No 98
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=97.88 E-value=8.3e-05 Score=76.64 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCeEEEEEcccCCc-cchHHHHHHHHHHcCCcceeeeEEEEecCCCccccc-cCCChhhhHHHHHhc--cCCCEEEEcCC
Q 010866 296 EPVRIAMVGKYTGL-SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGG 371 (498)
Q Consensus 296 ~~v~IaIVgkY~~l-~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~-~~~~p~~y~~~~~~l--~~~DGIilpGG 371 (498)
++++|+|+. --.. .+.-..+.+.|..... . +++.|+....-...+ ....-.+|...++.+ ..+||+|+.|+
T Consensus 34 rpl~i~ilN-lMp~k~~TE~q~~rll~~~~~--q--v~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGA 108 (302)
T PRK05368 34 RPLKILILN-LMPKKIETETQFLRLLGNTPL--Q--VDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGA 108 (302)
T ss_pred CCccEEEEe-CCCCCchHHHHHHHHhcCCCc--e--EEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCC
Confidence 358999996 3211 1233456666643322 2 334455433321111 000011222234444 46999999998
Q ss_pred CCC--C--C---chhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcch
Q 010866 372 FGN--R--G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 411 (498)
Q Consensus 372 ~g~--~--~---~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~ 411 (498)
+-. . . +....+.+++++++.+|+||||.|+|+++-++||-
T Consensus 109 p~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi 155 (302)
T PRK05368 109 PVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGI 155 (302)
T ss_pred CCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCC
Confidence 854 1 1 33466777888889999999999999999999994
No 99
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.87 E-value=2.5e-05 Score=76.03 Aligned_cols=91 Identities=20% Similarity=0.157 Sum_probs=62.2
Q ss_pred CCeEEEEEcccCCc-cch-HHHHHHHHHHc-CCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCC
Q 010866 296 EPVRIAMVGKYTGL-SDA-YLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (498)
Q Consensus 296 ~~v~IaIVgkY~~l-~da-y~SI~~AL~~a-G~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~ 372 (498)
...+|+++. .... .+. ..++.++++.. |+++... .... .+ + ..+.+.++|+|+||||-
T Consensus 30 ~~~~i~~Ip-tAs~~~~~~~~~~~~a~~~l~G~~~~~~----~~~~---~~-~----------~~~~l~~ad~I~l~GG~ 90 (212)
T cd03146 30 ARPKVLFVP-TASGDRDEYTARFYAAFESLRGVEVSHL----HLFD---TE-D----------PLDALLEADVIYVGGGN 90 (212)
T ss_pred CCCeEEEEC-CCCCCHHHHHHHHHHHHhhccCcEEEEE----eccC---cc-c----------HHHHHhcCCEEEECCch
Confidence 457999996 4422 223 45788999999 8876543 1110 00 0 12578899999999962
Q ss_pred CCC---Cc--hhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 373 GNR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 373 g~~---~~--~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
-.. .+ .+..++++.+.++++|++|||.|||+|.
T Consensus 91 ~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 91 TFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 111 11 3567778888888999999999999998
No 100
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.86 E-value=1.9e-05 Score=76.01 Aligned_cols=71 Identities=21% Similarity=0.394 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-----CchhHHHHHH
Q 010866 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAK 385 (498)
Q Consensus 311 day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-----~~~g~i~~i~ 385 (498)
.++..-.++|+.+|.+.... . .| ++|.++||+|+|||-... ...+..+.++
T Consensus 6 G~~~EH~~~l~~lg~~~~~V------r-----------~~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~ 61 (188)
T PF01174_consen 6 GAFREHIRMLERLGAEVVEV------R-----------TP-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLR 61 (188)
T ss_dssp SSHHHHHHHHHHTTSEEEEE------------------SG-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHH
T ss_pred cChHHHHHHHHHcCCCeEEe------C-----------CH-------HHHccCCEEEECCCcHHHHHHHHHHcCCHHHHH
Confidence 36666788899998776322 1 12 578889999999997652 2257889999
Q ss_pred HHHHcC-CCEEeehHHHHHHH
Q 010866 386 YAREHR-IPYLGICLGMQVAV 405 (498)
Q Consensus 386 ~a~e~~-iPiLGIClGmQll~ 405 (498)
.+...+ +|+||.|-||-||+
T Consensus 62 ~~~~~g~~Pv~GTCAGlIlLa 82 (188)
T PF01174_consen 62 EFIRSGSKPVWGTCAGLILLA 82 (188)
T ss_dssp HHHHTT--EEEEETHHHHHHE
T ss_pred HHHHcCCCceeehhHHHHHhh
Confidence 998887 99999999999998
No 101
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.84 E-value=0.0013 Score=70.54 Aligned_cols=85 Identities=24% Similarity=0.239 Sum_probs=62.7
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc-CCCEEEEcCCCCCC-
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 375 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~-~~DGIilpGG~g~~- 375 (498)
.|||+..+- .+.=-|.--++.|+.+|+++.-. .+ +++ +.+. ++|+|.||||+-+-
T Consensus 246 ~rIAVA~D~-AF~FyY~~nl~~Lr~~GAelv~F------SP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARDA-AFNFYYPENLELLREAGAELVFF------SP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEecc-hhccccHHHHHHHHHCCCEEEEe------CC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 689997432 13335778899999999987643 22 221 2454 59999999998752
Q ss_pred -----CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 376 -----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 376 -----~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
..+.+.+.|+.+.+.++|++|=|-|+-.|.
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~ 337 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLG 337 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeeh
Confidence 235578899999999999999999998776
No 102
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.83 E-value=5.5e-05 Score=90.56 Aligned_cols=91 Identities=18% Similarity=0.213 Sum_probs=63.1
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCC-
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN- 374 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~- 374 (498)
.++||+|+--.| .. .-.....||+.+|+++... |+. ++.+.. ..|.+++||++||||+.
T Consensus 1036 ~~pkVaVl~~pG-tN-~~~e~~~Af~~aGf~~~~V----~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAIIREEG-SN-GDREMAAAFYAAGFEPWDV----TMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----Eee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 468999996444 32 5678899999999987432 322 332211 34788999999999954
Q ss_pred -C---C--c-------hhHHHHHHHHH-HcCCCEEeehHHHHHHHH
Q 010866 375 -R---G--V-------QGKILAAKYAR-EHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 375 -~---~--~-------~g~i~~i~~a~-e~~iPiLGIClGmQll~v 406 (498)
. + + ....+.++.+. +.+.++||||.|+|+|.-
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~ 1141 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMAL 1141 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHH
Confidence 2 1 0 23455566666 458999999999999983
No 103
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.83 E-value=6.4e-05 Score=89.49 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=64.4
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
.++||+|+--.| .. +-.....||+.+|+++... |+. ++....+... .......+.++|+|++||||+.-
T Consensus 976 ~kpkvaIl~~pG-tN-ce~d~a~Af~~aG~~~~~v----~~~--dl~~~~i~~s---~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIPVFPG-TN-SEYDSAKAFEKEGAEVNLV----IFR--NLNEEALVES---VETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----EEe--cCcccccccc---hhhhhcccccCcEEEEcCccCcc
Confidence 468999996344 32 5578899999999885442 332 2211110000 00011246889999999999652
Q ss_pred ----Cc----------hhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 376 ----GV----------QGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 376 ----~~----------~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
+- ....++++.+.+.+.|+||||.|+|+|.
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~ 1088 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV 1088 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH
Confidence 11 2355667777788999999999999998
No 104
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.77 E-value=2.5e-05 Score=72.72 Aligned_cols=50 Identities=32% Similarity=0.375 Sum_probs=41.7
Q ss_pred hccCCCEEEEcCCCCCC------CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~------~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
.+.++|+|+||||+... ...++.+.|+.+.+++.|++|||-|||+|.-.+
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 46789999999998752 124678899999999999999999999999433
No 105
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=97.73 E-value=0.0001 Score=88.65 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=62.6
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
.++||+|+--.| .. .-.....||+.+|+++... |+ .++.... ..|.+++++++||||+..
T Consensus 1034 ~~pkv~il~~pG-~N-~~~e~~~Af~~aG~~~~~v----~~--~dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAILREQG-VN-SHVEMAAAFDRAGFDAIDV----HM--SDLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEEECCC-CC-CHHHHHHHHHHcCCCeEEE----Ee--ecCcCCC------------CChhhCcEEEECCccCCc
Confidence 457999996334 32 5678999999999987543 32 2332211 247889999999998652
Q ss_pred C-------c-------hhHHHHHHHHH-HcCCCEEeehHHHHHHHH
Q 010866 376 G-------V-------QGKILAAKYAR-EHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 376 ~-------~-------~g~i~~i~~a~-e~~iPiLGIClGmQll~v 406 (498)
. + ....++++.+. +.+.++||||.|+|+|.-
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~ 1139 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSN 1139 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHH
Confidence 1 1 12345566644 678999999999999983
No 106
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=97.67 E-value=0.00013 Score=87.63 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 375 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~ 375 (498)
.++||+|+--.| .. .-.....||..+|+++... |+ .++.... ..|.+++||++||||...
T Consensus 1054 ~~p~vail~~pG-~N-~~~e~~~Af~~aGf~~~~v----~~--~dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAILREQG-VN-GDREMAAAFDRAGFEAWDV----HM--SDLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEEECCC-CC-CHHHHHHHHHHhCCCcEEE----EE--eccccCC------------cchhheeEEEEcCCCCCc
Confidence 457999996344 32 5578899999999985543 32 2332211 246788999999998652
Q ss_pred C-------c-------hhHHHHHHHHH-HcCCCEEeehHHHHHHH
Q 010866 376 G-------V-------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (498)
Q Consensus 376 ~-------~-------~g~i~~i~~a~-e~~iPiLGIClGmQll~ 405 (498)
. + ....+.++.+. +.+.++||||.|+|+|.
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~ 1158 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLS 1158 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHH
Confidence 1 1 23445566666 67899999999999999
No 107
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.53 E-value=0.00021 Score=55.21 Aligned_cols=75 Identities=28% Similarity=0.340 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC----chhHHHHHHHHH
Q 010866 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYAR 388 (498)
Q Consensus 313 y~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~----~~g~i~~i~~a~ 388 (498)
+.++.++++..++.+.+. ......... .....++|++++|||+.... .....+.+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDVV------SPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEEE------eCCCCcccc-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 356788888888555443 222211100 02356899999999988752 246677888888
Q ss_pred HcCCCEEeehHHHHHH
Q 010866 389 EHRIPYLGICLGMQVA 404 (498)
Q Consensus 389 e~~iPiLGIClGmQll 404 (498)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 108
>PHA03366 FGAM-synthase; Provisional
Probab=97.35 E-value=0.00071 Score=81.61 Aligned_cols=91 Identities=19% Similarity=0.124 Sum_probs=63.9
Q ss_pred CCCCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCC
Q 010866 294 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (498)
Q Consensus 294 ~~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g 373 (498)
+..++||+|+--.| .. .-.....||..+|+++... + -.++... ..+.+++||++||||+
T Consensus 1025 ~~~~prVaIl~~pG-~N-~~~e~~~Af~~aGf~~~~v----~--~~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVLLLPG-CP-GPHALLAAFTNAGFDPYPV----S--IEELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEEECCC-CC-CHHHHHHHHHHcCCceEEE----E--eecCCCC-------------CccccceEEEEcCCCC
Confidence 34578999996444 32 5578999999999986543 2 2333221 1278899999999997
Q ss_pred CCC-------c-------hhHHHHHHHHH-HcCCCEEeehH-HHHHHH
Q 010866 374 NRG-------V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (498)
Q Consensus 374 ~~~-------~-------~g~i~~i~~a~-e~~iPiLGICl-GmQll~ 405 (498)
... + ....++++.+. +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 521 1 23446666666 46899999998 999998
No 109
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.09 E-value=0.0017 Score=77.86 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=61.8
Q ss_pred CCCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCC
Q 010866 295 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 374 (498)
Q Consensus 295 ~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~ 374 (498)
..++||+|+--.| .. .-.....||..+|+++... .-.++... ..+.+++||+++|||+.
T Consensus 927 ~~~p~VaIl~~pG-~N-~~~e~~~Af~~aGf~~~~v------~~~dl~~~-------------~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVLLLPG-QS-VPHGLLAALTNAGFDPRIV------SITELKKT-------------DFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEEeCCC-CC-CHHHHHHHHHHcCCceEEE------EeccCCCC-------------CchhheEEEEEcCcCCC
Confidence 3467899996334 32 5578999999999986543 22333221 23567899999999975
Q ss_pred CC-------c-------hhHHHHHHHHH-HcCCCEEeehH-HHHHHH
Q 010866 375 RG-------V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 405 (498)
Q Consensus 375 ~~-------~-------~g~i~~i~~a~-e~~iPiLGICl-GmQll~ 405 (498)
.. + ....+.++.+. +.+.++||||- |+|+|+
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 21 1 23445566666 45899999997 999998
No 110
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=96.91 E-value=0.0027 Score=60.80 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=43.4
Q ss_pred ccCCCEEEEcCCCCCC-------CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchh
Q 010866 360 LKGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (498)
Q Consensus 360 l~~~DGIilpGG~g~~-------~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v 412 (498)
...+||+|+.|.|=.- -++...+.+.+++++..|+||||-|+|.+..+++|-.
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~ 119 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIK 119 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcc
Confidence 4679999999987541 2345677888899999999999999999998888874
No 111
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.89 E-value=0.0042 Score=57.13 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=37.4
Q ss_pred CCCEEEEcCCCCCC---CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 362 ~~DGIilpGG~g~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
++|+|++|||++.. ......+.++++.++++|+.|||-|.++|+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La 106 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLI 106 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 58999999997642 224578889999999999999999999998
No 112
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.78 E-value=0.0049 Score=58.69 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=59.3
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcc--eeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~--~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
-|+++. ++.++..-.+-++++-++. .+++++..+.. | +++.++||+|+|||-...
T Consensus 13 VIGVLA----LQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT-----------~-------~D~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 13 VIGVLA----LQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT-----------K-------NDLAQCDALIIPGGESTAM 70 (226)
T ss_pred EEeeee----hhhHHHHHHHHHHHhhccCcceEEEEEEeecC-----------H-------HHHhhCCEEEecCCchhHH
Confidence 467664 4457766666666665555 45544444322 1 578899999999998763
Q ss_pred ----CchhHHHHHHHHHHcC-CCEEeehHHHHHHHHH
Q 010866 376 ----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIE 407 (498)
Q Consensus 376 ----~~~g~i~~i~~a~e~~-iPiLGIClGmQll~va 407 (498)
...+....+..+..+. +|+.|.|.||-+|.-.
T Consensus 71 slia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred HHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 2345666666666666 9999999999998843
No 113
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.75 E-value=0.0024 Score=62.96 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=40.7
Q ss_pred ccCCCEEEEcCCCCCC--------------CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 360 l~~~DGIilpGG~g~~--------------~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
..++|+|++|||+|.. ..+...+.++.+.++++|+..||-|-++|+-+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 4579999999998741 134578889999999999999999999998665
No 114
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=96.65 E-value=0.0095 Score=54.73 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCCC---CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 362 ~~DGIilpGG~g~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.+|+|++|||++.. .....++.++++.++++|+.|||-|-++|+
T Consensus 62 ~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 62 DYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 58999999998543 234578889999999999999999999887
No 115
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.56 E-value=0.0028 Score=68.96 Aligned_cols=111 Identities=25% Similarity=0.315 Sum_probs=71.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||.|.| -|..|..||=..+|-+=++|..+||+|..-|- =.||= -=|||.||+|.
T Consensus 1 ~~~iMv-~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK~--------QNMsL----Ns~it~~G~EI------------- 54 (486)
T COG1492 1 MKAIMV-QGTTSDAGKSFLVAGLCRILARRGYRVAPFKS--------QNMSL----NSAITPGGGEI------------- 54 (486)
T ss_pred CCccEE-EeccCCcchhhhhhhhhHHHHhcCCccCCCch--------hhccc----ccEECCCCcEE-------------
Confidence 344444 36889999999999999999999999997773 23333 35889999885
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCC---------CeeEEcccc-------------------hHHHHHHHHHHhccc
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLG---------KTVQVVPHI-------------------TDEIQDWIERVAMIP 132 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG---------~tvQviPHi-------------------t~ei~~~i~~~~~~p 132 (498)
-.+|.+|..=...+.--|-. .+-|||=|= -.++++.+.++
T Consensus 55 --------graQ~~QA~Aa~i~p~v~mNPvLLKP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l---- 122 (486)
T COG1492 55 --------GRAQALQALAAGIEPSVHMNPVLLKPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERL---- 122 (486)
T ss_pred --------ehhhhHHHHHcCCCCccccCCEEEeecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHh----
Confidence 23455555444443333311 245655432 12333444444
Q ss_pred CCCCCCCccEEEEeeCccccc
Q 010866 133 VDGKEGPVDVCVIELGGTIGD 153 (498)
Q Consensus 133 vd~~~~~~dv~i~EiGGTvGd 153 (498)
...+|+|++|--|+-..
T Consensus 123 ----~~~~d~Vv~EGAGSpaE 139 (486)
T COG1492 123 ----DREYDVVVIEGAGSPAE 139 (486)
T ss_pred ----hhcccEEEEecCCChhh
Confidence 35789999999998654
No 116
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.42 E-value=0.0049 Score=60.66 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.2
Q ss_pred ccCCCEEEEcCCCCCC--------------CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 360 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 360 l~~~DGIilpGG~g~~--------------~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
+.++|+|++|||++.. ..+...+.++.+.++++|+.+||-|-++|+-+.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 4579999999998631 124577889999999999999999999998665
No 117
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.41 E-value=0.0042 Score=58.35 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=37.6
Q ss_pred CCCEEEEcCCCCCC---CchhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 362 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 362 ~~DGIilpGG~g~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
.+|+|++|||++.. ........++.+.++++|+.|||.|.++|+-
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 57999999998642 2245678899999999999999999999884
No 118
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.06 E-value=0.018 Score=57.49 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=69.9
Q ss_pred hHHHHHHHHhhhcCCCCCeEEEEEcccCCcc---chH-HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHH
Q 010866 280 LLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA 355 (498)
Q Consensus 280 ~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~---day-~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~ 355 (498)
-+..|..+...+-. +..||++|. +-... +.| .+..++++..|+++... +.. + +
T Consensus 16 ~l~~~~~~~~~~~~--~~~~v~fIP-tAs~~~~~~~y~~~~~~af~~lG~~v~~l------~~~--~------------d 72 (233)
T PRK05282 16 YLEHALPLIAELLA--GRRKAVFIP-YAGVTQSWDDYTAKVAEALAPLGIEVTGI------HRV--A------------D 72 (233)
T ss_pred hHHHHHHHHHHHHc--CCCeEEEEC-CCCCCCCHHHHHHHHHHHHHHCCCEEEEe------ccc--h------------h
Confidence 45556555655532 245899995 65321 234 35788899989874422 111 0 1
Q ss_pred HHHhccCCCEEEEcCCCCCC-----CchhHHHHHHHHHHcCCCEEeehHHHHHHHHHh
Q 010866 356 AWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 408 (498)
Q Consensus 356 ~~~~l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~ 408 (498)
..+.+.++|+|+++||--.. ...+..+.++.+.++++|+.|.|.|.-+++-..
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence 12568899999999985432 124677888989999999999999998877433
No 119
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=95.85 E-value=0.049 Score=53.53 Aligned_cols=169 Identities=17% Similarity=0.134 Sum_probs=99.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||-|||||- =.+.||=.+++.|.+.|+.+|++|..+| |.++|-.. ++ ++..|-|.-.+.++.+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~~g~~v~~~K-------------Pi~~g~~~-~~-~~~~~~D~~~l~~~~~~ 65 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALASQGKTVAGYK-------------PVAKGSKE-TP-EGLRNKDALVLQSVSSI 65 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHHCCCeEEEEC-------------ccccCCcc-CC-CCCchHHHHHHHHhcCC
Confidence 467899874 4889999999999999999999998877 88888532 22 23345444445555554
Q ss_pred CCCCCC-c---ccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccc--c
Q 010866 81 KLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD--I 154 (498)
Q Consensus 81 ~l~~~~-n---~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGd--i 154 (498)
+.+-.. | ++.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+.. -
T Consensus 66 ~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl~~p~~ 122 (231)
T PRK12374 66 ELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGWRSLMN 122 (231)
T ss_pred CCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCcceecc
Confidence 432111 1 1111 1111222 111 2357888887764 3789999997762221 0
Q ss_pred CcchHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCC
Q 010866 155 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (498)
Q Consensus 155 Es~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~ 221 (498)
+...+.+.++++ +- -++.|- + ...|. .--|.-+++.+++.|+..-++|+....+
T Consensus 123 ~~~~~~d~~~~~----~~-pvilV~----~--~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 123 DLRPLSEWVVQE----QL-PVLMVV----G--IQEGC--INHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred CcccHHHHHHHh----CC-CEEEEE----C--CCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 112344554443 21 122222 0 01233 2345567788889999999999976543
No 120
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.78 E-value=0.038 Score=49.77 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred EEEEEcccCCccc-hHHHHHHHHHHcCCcceeeeEEEEecCCCccc-cccCCChhhhHHHHHhc--cCCCEEEEcCCCCC
Q 010866 299 RIAMVGKYTGLSD-AYLSILKALLHASVDLRKKLVIDWIPACDLED-ATEKENPDAYKAAWKLL--KGADGILVPGGFGN 374 (498)
Q Consensus 299 ~IaIVgkY~~l~d-ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~-~~~~~~p~~y~~~~~~l--~~~DGIilpGG~g~ 374 (498)
||+++- |..+.. .+....+.|+.+++++.+. ......+.. ....-.|. ...+.. ..+|+|++|||.+.
T Consensus 3 ~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~vv----s~~~~~v~s~~g~~i~~~---~~l~~~~~~~~D~liVpGg~~~ 74 (142)
T cd03132 3 KVGILV-ADGVDAAELSALKAALKAAGANVKVV----APTLGGVVDSDGKTLEVD---QTYAGAPSVLFDAVVVPGGAEA 74 (142)
T ss_pred EEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEEE----ecCcCceecCCCcEEecc---eeecCCChhhcCEEEECCCccC
Confidence 566663 433322 4667889999998766542 111111100 00000000 000122 25899999998764
Q ss_pred C----CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 375 R----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 375 ~----~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
. ......++++++.++++|+.+||-|-.+|+
T Consensus 75 ~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La 109 (142)
T cd03132 75 AFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLE 109 (142)
T ss_pred HHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHH
Confidence 2 235677889999999999999999999888
No 121
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.70 E-value=0.067 Score=49.54 Aligned_cols=129 Identities=16% Similarity=0.204 Sum_probs=79.7
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCC
Q 010866 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDN 86 (498)
Q Consensus 7 tGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~l~~~~ 86 (498)
..+--.|.||=.+|+.|+..|.++|++|-++-.||--.. . | +++
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~----~----~--------------------~~~-------- 47 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS----I----P--------------------KMW-------- 47 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC----c----h--------------------HHH--------
Confidence 334457899999999999999999999999999885421 0 0 000
Q ss_pred cccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHHHHHHHh
Q 010866 87 NITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQF 166 (498)
Q Consensus 87 n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ea~rq~ 166 (498)
| -|...+.+++++.... ..++|+||+-.++.++|. .+.+++
T Consensus 48 ---------------~-----------~~~~~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~----~~~~~~-- 88 (169)
T cd02037 48 ---------------R-----------GPMKMGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE----HLTLAQ-- 88 (169)
T ss_pred ---------------h-----------CcchHHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH----HHHHHh--
Confidence 0 0122344555555543 257999999999988761 122221
Q ss_pred hhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCC
Q 010866 167 SYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 220 (498)
Q Consensus 167 ~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~ 220 (498)
. ...+..++|. ..+..--+-+...++.+++.++...++|+.-..
T Consensus 89 ---~-----~~ad~viiV~--~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~ 132 (169)
T cd02037 89 ---S-----LPIDGAVIVT--TPQEVALDDVRKAIDMFKKVNIPILGVVENMSY 132 (169)
T ss_pred ---c-----cCCCeEEEEE--CCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 0 0112233332 123444445566777888899988888775443
No 122
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=95.60 E-value=0.029 Score=54.23 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=92.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~l~ 83 (498)
||||| .=++.||=.+++.|.+.|+.+|++|...| |.++|--... .|=|.-.+.++.+....
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~~~~~~ 62 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALREAGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLSGLPLD 62 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHHcCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHcCCCCC
Confidence 56765 46999999999999999999999998865 6666631110 12233335555444322
Q ss_pred CCCcccchHhhHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCcccccc--Ccc
Q 010866 84 RDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI--ESM 157 (498)
Q Consensus 84 ~~~n~t~G~iy~~v----i~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdi--Es~ 157 (498)
. ...++-.|+.. +..++.| . +--.+.|++.+.+++ .++|+||||-.|.+.+- .+.
T Consensus 63 ~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~~~~~~ 123 (222)
T PRK00090 63 Y--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVPLTEDL 123 (222)
T ss_pred h--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceeccCCCCC
Confidence 1 11122222111 1111222 1 113367888887764 36899999987765432 111
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCC
Q 010866 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVA 221 (498)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~ 221 (498)
-..+-+++ .+ ..++.|.- +. .+. ...+.-+++.+++.|+...++|+....+
T Consensus 124 ~~adl~~~----l~-~pvilV~~---~~---~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 124 TLADLAKQ----LQ-LPVILVVG---VK---LGC--INHTLLTLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred cHHHHHHH----hC-CCEEEEEC---CC---CcH--HHHHHHHHHHHHHCCCCeEEEEEccCCC
Confidence 22223333 32 22443331 11 122 2246677888888899998988875443
No 123
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=95.52 E-value=0.021 Score=56.71 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=40.0
Q ss_pred ccCCCEEEEcCCCCC----CCchhHHHHHHHHHHcCCCEEeehHHHHHHHHH
Q 010866 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVIE 407 (498)
Q Consensus 360 l~~~DGIilpGG~g~----~~~~g~i~~i~~a~e~~iPiLGIClGmQll~va 407 (498)
..++|+|++|||.|. +..+...+.++.+.++++|+..||-|-++|.-+
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 457999999999874 233567788999999999999999999988754
No 124
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=95.33 E-value=0.021 Score=53.83 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=39.1
Q ss_pred cCCCEEEEcCC-CCCCC---chhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 361 KGADGILVPGG-FGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 361 ~~~DGIilpGG-~g~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.++|+|++||| .|... ....+..++++.++++|+..||-|-++|.
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 48999999999 77642 25688899999999999999999999988
No 125
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=95.05 E-value=0.016 Score=52.78 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=35.8
Q ss_pred cCCCEEEEcCCCCC----CCc-hhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 361 KGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 361 ~~~DGIilpGG~g~----~~~-~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.++|+|++|||.+. +.. ....+.++++.++++|+.+||-|-.+|+
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~ 85 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLA 85 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHH
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhh
Confidence 46999999999883 222 5678889999999999999999997777
No 126
>PRK13768 GTPase; Provisional
Probab=94.95 E-value=0.17 Score=50.61 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=34.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+.|+|+|- +|.||-..+..+...|+.+|.+|.++.+||-
T Consensus 3 ~~i~v~G~--~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGT--AGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECC--CCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 55666665 9999999999999999999999999999984
No 127
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.90 E-value=0.042 Score=51.23 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=38.4
Q ss_pred cCCCEEEEcCCCCCC--CchhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 361 KGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 361 ~~~DGIilpGG~g~~--~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
.++|.|++|||+... ..+...++++++.++++|+.+||-|.++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 468999999997532 3356788899999999999999999999883
No 128
>PRK04155 chaperone protein HchA; Provisional
Probab=94.74 E-value=0.043 Score=56.42 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=38.5
Q ss_pred ccCCCEEEEcCCCCC----CCchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 360 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 360 l~~~DGIilpGG~g~----~~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
..++|+|++|||.|. +..+...+.++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 357999999999875 2345678889999999999999999998665
No 129
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=94.71 E-value=0.048 Score=51.13 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=39.3
Q ss_pred hccCCCEEEEcCCCCCC---CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 359 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
...++|.|++|||.+.. ..+..++.++.+.++++|+.+||-|-++|+
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La 110 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLA 110 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHH
Confidence 35578999999987753 345678889999899999999999999888
No 130
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.60 E-value=0.095 Score=42.22 Aligned_cols=33 Identities=36% Similarity=0.513 Sum_probs=30.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|+++|.- |.||-.+++.+...|++.|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6677766 99999999999999999999999888
No 131
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=94.48 E-value=0.058 Score=53.65 Aligned_cols=45 Identities=20% Similarity=0.349 Sum_probs=38.1
Q ss_pred cCCCEEEEcCCCCCC----CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 361 ~~~DGIilpGG~g~~----~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.++|+|++|||.|.. ..+...+.++++.++++|+..||-|-+.+.
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 579999999997752 345677889999999999999999998665
No 132
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.43 E-value=0.036 Score=54.96 Aligned_cols=54 Identities=24% Similarity=0.202 Sum_probs=40.2
Q ss_pred cCCCEEEEcCCCCCC------CchhHHHHHHHHHHcCCCEEeehHHHHHHHH----Hhcchhcc
Q 010866 361 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI----EFARSVLN 414 (498)
Q Consensus 361 ~~~DGIilpGG~g~~------~~~g~i~~i~~a~e~~iPiLGIClGmQll~v----a~g~~v~~ 414 (498)
..+|-+++.||.... ....+.+.++.+.++++|+|.||-|.|+|.- +.|.++-|
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY~~a~G~ri~G 114 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYYETASGTRIDG 114 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccceeecCCCcEeec
Confidence 578988888876542 2234567899999999999999999999985 44454443
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=94.36 E-value=0.055 Score=53.05 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=38.8
Q ss_pred cCCCEEEEcCCCCCC----CchhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 361 ~~~DGIilpGG~g~~----~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
.++|+|++|||++.. ..+...++++.+.++++|+.+||-|-++|+-
T Consensus 89 ~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 89 SDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred hHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 468999999998642 3356788999999999999999999998874
No 134
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.22 E-value=0.28 Score=51.47 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=47.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-------CCCCCCc-cccceEEEccCCccc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-------DAGTMSP-FEHGEVFVLDDGGEV 67 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv-------d~gtmsP-~~HgEvfV~~dG~E~ 67 (498)
.|-|||- +|-||=.....+...|+.+|++|.++.+||.-.+ |.-.|.. .+|..||+-..++..
T Consensus 58 ~igi~G~--~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~ 128 (332)
T PRK09435 58 RIGITGV--PGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSG 128 (332)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcc
Confidence 5677775 8999999999999999999999999999998665 4444542 355556665555433
No 135
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=94.08 E-value=0.073 Score=48.39 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=38.2
Q ss_pred cCCCEEEEcCCCC-CC---CchhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 361 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 361 ~~~DGIilpGG~g-~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
.++|.|++|||++ .. ......+.++.+.++++++.+||-|..+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 5799999999983 22 2356788899999999999999999999884
No 136
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=93.93 E-value=0.42 Score=54.69 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=33.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
||-|||+| .=++.||=.++..|.+.|+.+|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 57888884 56899999999999999999999999999
No 137
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=93.81 E-value=0.12 Score=49.21 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=36.5
Q ss_pred cCCCEEEEcCCCCCC----CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 361 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 361 ~~~DGIilpGG~g~~----~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.++|.|++|||++.. ..+...++++.+.++++|+.+||-|-.+|.
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 468999999997532 234578889999999999999999998754
No 138
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.75 E-value=0.11 Score=49.04 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=38.1
Q ss_pred hccCCCEEEEcCCCCCC------CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 359 LLKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 359 ~l~~~DGIilpGG~g~~------~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
...++|.|++|||.+.. ..+..+++++.+.++++++.+||-|..+|+
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 118 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLA 118 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHH
Confidence 34678999999986542 234577888888999999999999999887
No 139
>PRK14974 cell division protein FtsY; Provisional
Probab=93.49 E-value=1.2 Score=46.89 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+.|.++| ..|.||=.+++.++..|+.+|++|.++-.|+|
T Consensus 141 ~vi~~~G--~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVG--VNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4678888 88999999999999999999999999888877
No 140
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.30 E-value=0.39 Score=46.44 Aligned_cols=106 Identities=17% Similarity=0.055 Sum_probs=65.3
Q ss_pred HHHHHHhhhcCCCCCeEEEEEcccCCc-c-chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc
Q 010866 283 EWTSRAEICDGLHEPVRIAMVGKYTGL-S-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (498)
Q Consensus 283 ~W~~lv~~v~~~~~~v~IaIVgkY~~l-~-day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l 360 (498)
.+..+..... +...+|+++. .... . +......++++..|+..... ..++. . .++ ...+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~~---~~~~~--~------~~~----~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVHL---LLIDT--A------NDP----DVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEEE---eccCC--C------CCH----HHHHHH
Confidence 3445554443 2356899996 4421 1 13345788889999876543 22221 1 011 233678
Q ss_pred cCCCEEEEcCCCCCC---Cc--hhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 361 KGADGILVPGGFGNR---GV--QGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 361 ~~~DGIilpGG~g~~---~~--~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
.++|+|+++||--.. .+ .+..+.+++...++.|+.|.|-|..++.-
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~ 129 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGE 129 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhh
Confidence 999999999964322 11 23555666666689999999999999983
No 141
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=93.25 E-value=0.34 Score=48.46 Aligned_cols=39 Identities=28% Similarity=0.540 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|++|++|. .|.||=.+|+.++..+...|++|-++-+||-
T Consensus 1 ~~~~~~gk--gG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 1 RYIFFGGK--GGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred CEEEEECC--CCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 57888886 8999999999999999999999999999994
No 142
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=93.10 E-value=2.1 Score=41.63 Aligned_cols=40 Identities=30% Similarity=0.506 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|-|.|+++ =-|.||=.+|+.++..|..+|++|-++-+||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALARLGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 55666554 46889999999999999999999999999994
No 143
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.94 E-value=0.12 Score=48.07 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.5
Q ss_pred ccCCCEEEEcCCCCCC---CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 360 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 360 l~~~DGIilpGG~g~~---~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
...+|.|++|||.+.. .....++.++++.++++|+.+||-|.-+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4478999999997643 234577888888899999999999997766
No 144
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=92.88 E-value=0.21 Score=46.90 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.6
Q ss_pred ccCCCEEEEcCCCCCC--CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 360 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 360 l~~~DGIilpGG~g~~--~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
..++|.|++|||++.. ..+..+++++.+.++++.+.+||-|..+|+
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 4578999999987653 345678899999999999999999999887
No 145
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.83 E-value=0.72 Score=47.30 Aligned_cols=43 Identities=33% Similarity=0.499 Sum_probs=38.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
+++|.|+|. .|-||=..+..++..|..+|++|.++.+||+-+.
T Consensus 34 ~~~i~i~G~--~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~ 76 (300)
T TIGR00750 34 AHRVGITGT--PGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPF 76 (300)
T ss_pred ceEEEEECC--CCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 367888975 8999999999999999999999999999997544
No 146
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=92.83 E-value=0.16 Score=47.08 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.9
Q ss_pred ccCCCEEEEcCCCCCC----CchhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 360 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 360 l~~~DGIilpGG~g~~----~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
..++|.|++|||.+.. ..+...+.++.+.++++|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 4579999999986421 2345778889999999999999999999883
No 147
>PRK10867 signal recognition particle protein; Provisional
Probab=92.82 E-value=1.7 Score=47.39 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=35.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-CCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~-g~~v~~~K~DpY 42 (498)
+.|+++| ..|.||=.+++.++..|+.+ |.+|.++-+|+|
T Consensus 101 ~vI~~vG--~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 101 TVIMMVG--LQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred EEEEEEC--CCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4677887 89999999999999999998 999999999997
No 148
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=92.56 E-value=0.31 Score=50.49 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=54.3
Q ss_pred CCeEEEEEcccCCccchHHHHHH-HHHHcCCcceeeeEEEEecCCCccccccCCCh---hhhHHHHHhcc--CCCEEEEc
Q 010866 296 EPVRIAMVGKYTGLSDAYLSILK-ALLHASVDLRKKLVIDWIPACDLEDATEKENP---DAYKAAWKLLK--GADGILVP 369 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~SI~~-AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p---~~y~~~~~~l~--~~DGIilp 369 (498)
++++|+|+. - ++ .+...-. -|+..+- ....|++.|+....-...+ ..+ .++...++.++ .+||+|+.
T Consensus 33 rpL~I~IlN-L--MP-~K~~TE~Q~lrlL~~-tplqv~v~f~~~~sh~~k~--t~~~~l~~~Y~~~~~i~~~~~DglIIT 105 (298)
T PF04204_consen 33 RPLKIGILN-L--MP-DKEETERQFLRLLSN-TPLQVEVTFLYPASHKSKN--TSPEHLEKFYKTFDEIKDRKFDGLIIT 105 (298)
T ss_dssp --EEEEEE------S-SHHHHHHHHHHHCCS-SSS-EEEEEE--S-----S--S-HHHHHHHEE-HHHCTTS-EEEEEE-
T ss_pred cceEEEEEe-c--cc-chHHHHHHHHHHhcC-CCCceEEEEEEeccccCCC--CCHHHHHHhhhCHHHHhhCCCCEEEEe
Confidence 468999996 2 33 3333222 2222222 2333445566433321111 111 12223345553 68999999
Q ss_pred CCCCCC-------CchhHHHHHHHHHHcCCCEEeehHHHHH-HHHHhcchhc
Q 010866 370 GGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQV-AVIEFARSVL 413 (498)
Q Consensus 370 GG~g~~-------~~~g~i~~i~~a~e~~iPiLGIClGmQl-l~va~g~~v~ 413 (498)
|.|=+. -+....+.+.++.++..+.|.||.|.|. |...+|-.-.
T Consensus 106 GAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~ 157 (298)
T PF04204_consen 106 GAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKY 157 (298)
T ss_dssp --TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----E
T ss_pred CCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcc
Confidence 987652 2355677888999999999999999998 6666666544
No 149
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.49 E-value=2.7 Score=42.82 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+.|.++| ..|.||=.+++.++..|+..|++|.++-+|+|
T Consensus 73 ~vi~l~G--~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVG--VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 6788885 89999999999999999999999999999995
No 150
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=92.42 E-value=0.38 Score=51.22 Aligned_cols=91 Identities=20% Similarity=0.289 Sum_probs=56.3
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC---
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 375 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~--- 375 (498)
+|.|...-+....+-+..+++|+.. .... ..+..+.++++.. +| | ...++.+|+|||.+.+
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~-l~p~--y~V~~v~~~~l~~-----~p------w--~~~~~LlV~PGG~d~~y~~ 65 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRL-LSPH--YAVIPVTADELLN-----EP------W--QSKCALLVMPGGADLPYCR 65 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHh-cCCC--eEEEEeCHHHhhc-----Cc------c--ccCCcEEEECCCcchHHHH
Confidence 5666443333333444556666643 1112 2234556555532 11 2 3578999999998764
Q ss_pred CchhH-HHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 376 GVQGK-ILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 376 ~~~g~-i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
.+.+. .+.||.+.+++--+||||.|--+..
T Consensus 66 ~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 66 SLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred hhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 33343 7889999999999999999987655
No 151
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=92.35 E-value=0.59 Score=54.42 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=57.2
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 375 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~- 375 (498)
.+||||+..-+.. .++.+..|+..+|++..=+ .-.++-... ..|+++-||.++|||.+.
T Consensus 1058 ~PkVAilREeGvN--g~rEMa~af~~AgF~~~DV------tmtDlL~G~------------~~ld~frGlaf~GGFSYaD 1117 (1320)
T KOG1907|consen 1058 APKVAILREEGVN--GDREMAAAFYAAGFETVDV------TMTDLLAGR------------HHLDDFRGLAFCGGFSYAD 1117 (1320)
T ss_pred CCceEEeeccccc--cHHHHHHHHHHcCCceeee------eeehhhcCc------------eeHhHhcceeeecCcchHh
Confidence 4699999755533 5688899999999875321 122221111 246778999999999752
Q ss_pred ------Cc-------hhHHHHHHHHH-HcCCCEEeehHHHHHHH
Q 010866 376 ------GV-------QGKILAAKYAR-EHRIPYLGICLGMQVAV 405 (498)
Q Consensus 376 ------~~-------~g~i~~i~~a~-e~~iPiLGIClGmQll~ 405 (498)
++ +........+. ..+.--||||-|.|+|+
T Consensus 1118 vLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms 1161 (1320)
T KOG1907|consen 1118 VLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMS 1161 (1320)
T ss_pred hhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHH
Confidence 11 22222222222 35677899999999999
No 152
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=92.18 E-value=0.19 Score=50.67 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHH--HHHHHHHHc-
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKI--LAAKYAREH- 390 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i--~~i~~a~e~- 390 (498)
.|.++.++.+|+++.-. ++-.+|+. ....++-..||+++||--.++.-.++ ......+++
T Consensus 80 ASYVK~aEsgGARViPl---i~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~n 142 (340)
T KOG1559|consen 80 ASYVKLAESGGARVIPL---IYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERN 142 (340)
T ss_pred HHHHHHHHcCCceEEEE---ecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhcc
Confidence 36778888888775422 22122211 12456778999999995555432211 122333332
Q ss_pred ----CCCEEeehHHHHHHHHH--hcchhc
Q 010866 391 ----RIPYLGICLGMQVAVIE--FARSVL 413 (498)
Q Consensus 391 ----~iPiLGIClGmQll~va--~g~~v~ 413 (498)
--|+.|||||+.+|.+- .++.++
T Consensus 143 DaGehFPvyg~CLGFE~lsmiISqnrdil 171 (340)
T KOG1559|consen 143 DAGEHFPVYGICLGFELLSMIISQNRDIL 171 (340)
T ss_pred CCccccchhhhhhhHHHHHHHHhcChhHH
Confidence 36999999999998754 456555
No 153
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.87 E-value=0.95 Score=43.90 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 9 gv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+-=.|.||=.+|+.++..|..+|++|-++.+||.
T Consensus 7 ~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 40 (251)
T TIGR01969 7 SGKGGTGKTTITANLGVALAKLGKKVLALDADIT 40 (251)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3346789999999999999999999999999994
No 154
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.74 E-value=0.97 Score=43.87 Aligned_cols=41 Identities=32% Similarity=0.495 Sum_probs=35.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
||.|.|+++ =.|.||=.+|+.++..|..+|+||-++-+||.
T Consensus 1 m~iI~v~s~-KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVGV-KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEeC-CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 566666543 46889999999999999999999999999995
No 155
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=91.74 E-value=0.24 Score=45.68 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=37.0
Q ss_pred ccCCCEEEEcCCCCC---CCchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 360 LKGADGILVPGGFGN---RGVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 360 l~~~DGIilpGG~g~---~~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
...+|.|++|||++. ...+..++.++.+..++.++.+||-|..+++
T Consensus 59 ~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 107 (166)
T PF13278_consen 59 APDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLA 107 (166)
T ss_dssp CSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHH
T ss_pred cccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHh
Confidence 567899999999982 2335667888888888999999999999998
No 156
>PRK11249 katE hydroperoxidase II; Provisional
Probab=91.34 E-value=0.49 Score=54.64 Aligned_cols=102 Identities=20% Similarity=0.139 Sum_probs=61.9
Q ss_pred CeEEEEEcccCCcc-chHHHHHHHHHHcCCcceeee-EEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCCC
Q 010866 297 PVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 372 (498)
Q Consensus 297 ~v~IaIVgkY~~l~-day~SI~~AL~~aG~~~~v~v-~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG~ 372 (498)
..||+|+- +.... ..+..+.++|+.+|+.+.+.- ..-.|.... ...+..+- ..+.. ..+|+|+||||.
T Consensus 597 gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~--G~~I~aD~-----t~~~~~Sv~FDAVvVPGG~ 668 (752)
T PRK11249 597 GRKVAILL-NDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADD--GTVLPIAA-----TFAGAPSLTFDAVIVPGGK 668 (752)
T ss_pred ccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCC--CCEEecce-----eeccCCccCCCEEEECCCc
Confidence 45788875 44333 256788999999997655430 000111110 00000000 00111 258999999986
Q ss_pred CCC----CchhHHHHHHHHHHcCCCEEeehHHHHHHHH
Q 010866 373 GNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 406 (498)
Q Consensus 373 g~~----~~~g~i~~i~~a~e~~iPiLGIClGmQll~v 406 (498)
... .....+..++++.++.+|+..||-|.++|+-
T Consensus 669 ~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaa 706 (752)
T PRK11249 669 ANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAA 706 (752)
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHh
Confidence 432 2345788899999999999999999999993
No 157
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=91.20 E-value=1.4 Score=40.50 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=81.1
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCCCCCccc
Q 010866 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNIT 89 (498)
Q Consensus 10 v~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~l~~~~n~t 89 (498)
.-.+.||=.+++.|++.|+.+|+||-.+| |.+||- + . .|-|.-.-.+++.... +.+..
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k-------------P~~~~~----~-~--~d~d~~~i~~~~~~~~--~~~~~ 62 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK-------------PVQTGI----E-K--TNSDALLLQNISGTAL--DWDEV 62 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE-------------eeeeCC----C-C--CchHHHHHHHHcCCCC--chhcc
Confidence 46789999999999999999999998853 666752 0 0 1222111112221111 11111
Q ss_pred chHhhH-----HHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHHHHHH
Q 010866 90 TGKIYQ-----SVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALG 164 (498)
Q Consensus 90 ~G~iy~-----~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ea~r 164 (498)
.+-.|. .+....+ + + |.-..+|++.+.++. .++|++|||-.|.... .+.+--...
T Consensus 63 ~~~~~~~~~~p~~~~~~~-~----~-----~~~~~~i~~~~~~l~--------~~~D~viid~~g~~~~--~~~~~~~~~ 122 (166)
T TIGR00347 63 NPYAFALPLSPHIAADQE-G----R-----PIDLEELSKHLRTLE--------QKYDFVLVEGAGGLCV--PITEEYTTA 122 (166)
T ss_pred CCeeeCCCCChHHHHHHh-C----C-----CCCHHHHHHHHHHHH--------hcCCEEEEEcCCcccc--CCCCCCcHH
Confidence 110110 1111110 0 0 223346777777764 3689999999885433 111111233
Q ss_pred HhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEE
Q 010866 165 QFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 216 (498)
Q Consensus 165 q~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~ 216 (498)
++-..++-. ++.|= .+ ..++ -.=++-+.+.|++.|+..-++|+
T Consensus 123 dl~~~~~~~-vilV~----~~--~~~~--~~~~~~~~~~l~~~~~~i~gvv~ 165 (166)
T TIGR00347 123 DLIKLLQLP-VILVV----RV--KLGT--INHTLLTVEHARQTGLTLAGVIL 165 (166)
T ss_pred HHHHHhCCC-EEEEE----CC--CCcH--HHHHHHHHHHHHHCCCCeEEEEe
Confidence 344444422 43332 00 1122 23456677788899999888886
No 158
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.77 E-value=5 Score=43.71 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=89.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~ 81 (498)
+.|.+.|- .|.||=.+++.|+..|..+|++|.++-.|||- +|..+-.
T Consensus 242 ~vI~LVGp--tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R---iaAvEQL---------------------------- 288 (436)
T PRK11889 242 QTIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR---IGTVQQL---------------------------- 288 (436)
T ss_pred cEEEEECC--CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHH----------------------------
Confidence 45667776 99999999999999999999999999999875 1111110
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHHH
Q 010866 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (498)
Q Consensus 82 l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~e 161 (498)
+.|. +-+|-.|-++. -.+++.+.|..+.. ..+.|+|||...|.-- -....++
T Consensus 289 ----------k~ya---------e~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--kd~~lm~ 340 (436)
T PRK11889 289 ----------QDYV---------KTIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--RASETVE 340 (436)
T ss_pred ----------HHHh---------hhcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--cCHHHHH
Confidence 0111 11343333222 23567777777652 2368999999888833 2344566
Q ss_pred HHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 010866 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (498)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~R 217 (498)
.++++.....+..+ |++ +++ -.|.+-....++.++. +.++++|.-
T Consensus 341 EL~~~lk~~~Pdev---lLV----LsA--Ttk~~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 341 EMIETMGQVEPDYI---CLT----LSA--SMKSKDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred HHHHHHhhcCCCeE---EEE----ECC--ccChHHHHHHHHHhcC--CCCCEEEEE
Confidence 66666555544433 222 433 2333344566677766 556888875
No 159
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=90.36 E-value=1.7 Score=39.99 Aligned_cols=38 Identities=34% Similarity=0.483 Sum_probs=33.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
|.++|. +|-||=..++.++..|+.+|.+|.++..||.-
T Consensus 2 i~~~G~--~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~ 39 (148)
T cd03114 2 IGITGV--PGAGKSTLIDALITALRARGKRVAVLAIDPSS 39 (148)
T ss_pred EEEECC--CCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCC
Confidence 455654 78899999999999999999999999999843
No 160
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=90.29 E-value=1.2 Score=46.12 Aligned_cols=113 Identities=11% Similarity=0.180 Sum_probs=64.6
Q ss_pred CCeEEEEEcccCCcc-chHHHHHHHHHHcCCcceeeeEEEEecCCCcccccc-CCChhhhHHHHHhc--cCCCEEEEcCC
Q 010866 296 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLL--KGADGILVPGG 371 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~-day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~-~~~p~~y~~~~~~l--~~~DGIilpGG 371 (498)
++++|+|+. --... +.-..+++.|.....+ |++.|+....-...+. ...-.++-..++.+ ..+||+|+.|.
T Consensus 34 rpL~I~ILN-LMP~K~~TE~Q~lRlL~ntplq----v~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILILN-LMPKKIETENQFLRLLSNSPLQ----VNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEEe-cCCccHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 368999995 32111 1233455666443333 3344554333221110 00111222334444 46999999998
Q ss_pred CCCC-------CchhHHHHHHHHHHcCCCEEeehHHHHH-HHHHhcchhc
Q 010866 372 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQV-AVIEFARSVL 413 (498)
Q Consensus 372 ~g~~-------~~~g~i~~i~~a~e~~iPiLGIClGmQl-l~va~g~~v~ 413 (498)
|=+. -++...+.+.++.++-...|.||.|.|. |...+|-.-+
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~ 158 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKY 158 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCcc
Confidence 7542 2356677888999999999999999998 4445554433
No 161
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.22 E-value=5.3 Score=36.87 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=32.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+.++| ..|-||=.+++.+...|...|.+|.++-+|+|
T Consensus 3 ~~~~G--~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVG--LQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 45555 36889999999999999999999999999984
No 162
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=89.85 E-value=0.55 Score=48.16 Aligned_cols=48 Identities=29% Similarity=0.360 Sum_probs=38.3
Q ss_pred HhccCCCEEEEcCCCCCC--CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 358 KLLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 358 ~~l~~~DGIilpGG~g~~--~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
+....+|.|++|||.+.. .....+++++.+.++++++.|||-|--+|+
T Consensus 71 ~~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La 120 (322)
T PRK09393 71 ELLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLA 120 (322)
T ss_pred cccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHH
Confidence 345678999999986642 234577889888889999999999998766
No 163
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=89.83 E-value=0.8 Score=43.51 Aligned_cols=163 Identities=20% Similarity=0.283 Sum_probs=90.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~ 81 (498)
|=||||| .=.+.||=.+++.|.+.|+.+|.+|...| |+++|.. + |=|.-...++.+..
T Consensus 1 r~i~I~~-t~t~vGKT~vslgL~~~l~~~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~~~~~ 58 (199)
T PF13500_consen 1 RTIFITG-TDTGVGKTVVSLGLARALRRRGIKVGYFK-------------PIQTGPE---D-----DEDAELIRELFGLS 58 (199)
T ss_dssp -EEEEEE-SSSSSSHHHHHHHHHHHHHHTTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHHCCTC
T ss_pred CEEEEEe-CCCCCCHHHHHHHHHHHHHhCCCceEEEe-------------eeEecCC---C-----CchHHHHHHHhCCC
Confidence 3467765 45789999999999999999999998777 8888876 1 22444456666654
Q ss_pred CCCC--CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCcccc--ccCcc
Q 010866 82 LTRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG--DIESM 157 (498)
Q Consensus 82 l~~~--~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvG--diEs~ 157 (498)
.+.. +-++-..-....+..++.| ..++ .++|+ .++++ .+.|++|||=-|.+. -.+..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~~~~~~~~ 119 (199)
T PF13500_consen 59 EPPDDPSPYTFDEPASPHLAAELEG----VDID-----LERII--YKELA--------EEYDVVLVEGAGGLMVPIFSGD 119 (199)
T ss_dssp CCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTTSECCTTE
T ss_pred cccccccccccCcccCHHHHhhccC----Cccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccCcccccCh
Confidence 4322 2222222223344444443 2222 22332 24443 377999999444443 22223
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCcccc-CCchhhHHHhhcCCCcccEEEEecC
Q 010866 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKT-KPTQHSVRGLRGQGLTPNILACRST 219 (498)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~Kt-KptQhsvk~Lrs~GI~pd~lV~Rs~ 219 (498)
-.. ++...++-. +++|-- +...| --+..+++.+++.|+..-++|+...
T Consensus 120 ~n~----dia~~L~a~-vIlV~~---------~~~g~i~~~l~~~~~~~~~g~~v~GvI~N~~ 168 (199)
T PF13500_consen 120 LNA----DIAKALGAP-VILVAS---------GRLGTINHTLLTIEALKQRGIRVLGVILNRV 168 (199)
T ss_dssp EHH----HHHHHHT-E-EEEEEE---------SSTTHHHHHHHHHHHHHCTTS-EEEEEEEEC
T ss_pred HHH----HHHHHcCCC-EEEEeC---------CCCCCHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 334 444444421 333321 22222 0123466778889999999998874
No 164
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.02 E-value=3.2 Score=45.18 Aligned_cols=141 Identities=22% Similarity=0.335 Sum_probs=83.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIK 81 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~-~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~ 81 (498)
.|+++| ..|.||=.+++.++..|+ .+|++|.++-+|+|-- +.
T Consensus 101 vi~~vG--~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~---~a-------------------------------- 143 (428)
T TIGR00959 101 VILMVG--LQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP---AA-------------------------------- 143 (428)
T ss_pred EEEEEC--CCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch---HH--------------------------------
Confidence 455555 578999999999999987 5899999999999521 00
Q ss_pred CCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccch--HHH-HHHHHHHhcccCCCCCCCccEEEEeeCccccccCcch
Q 010866 82 LTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHIT--DEI-QDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 158 (498)
Q Consensus 82 l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit--~ei-~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~p 158 (498)
+. +-++.+...|-.+...+.-. .++ ++.++.+. ..++|+|||...|-.. +.. .
T Consensus 144 ------------~~---QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~-------~~~~DvVIIDTaGr~~-~d~-~ 199 (428)
T TIGR00959 144 ------------IE---QLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK-------ENGFDVVIVDTAGRLQ-IDE-E 199 (428)
T ss_pred ------------HH---HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH-------hcCCCEEEEeCCCccc-cCH-H
Confidence 00 11122233343444333211 233 34444442 3578999999999765 222 3
Q ss_pred HHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhc--CCCcccEEEEe
Q 010866 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--QGLTPNILACR 217 (498)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs--~GI~pd~lV~R 217 (498)
-++.++++..-+.++.+++| +.+. | .|.+++..+. ..+.++++|+-
T Consensus 200 l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~giIlT 247 (428)
T TIGR00959 200 LMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGVVLT 247 (428)
T ss_pred HHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEEEEe
Confidence 45777888877766665443 2221 2 2555654433 24566788765
No 165
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=88.92 E-value=2.3 Score=42.47 Aligned_cols=183 Identities=20% Similarity=0.275 Sum_probs=116.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDI 80 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~ 80 (498)
||-+|||| .=-++||=+++|-+.+.|+.+|++|...| |.|=|. +....+=|.=.+.|+.++
T Consensus 2 ~~~~fVtG-TDT~VGKTv~S~aL~~~l~~~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l~~~~~~ 62 (223)
T COG0132 2 MKRFFVTG-TDTGVGKTVVSAALAQALKQQGYSVAGYK-------------PVQTGS-----EETAENSDALVLQRLSGL 62 (223)
T ss_pred CceEEEEe-CCCCccHHHHHHHHHHHHHhCCCeeEEEC-------------ceeeCC-----CCCCCCchHHHHHHhcCC
Confidence 68899997 45689999999999999999999998887 777765 111114577778888888
Q ss_pred CCCCCCcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCcccc--ccCcch
Q 010866 81 KLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG--DIESMP 158 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvG--diEs~p 158 (498)
.++. -.++--.|+.-..--..-+.-|+++. .++|..+....- .++|.++||=-|=+. =-|...
T Consensus 63 ~~~~--~~~~py~f~~P~sPhlAa~~eg~~I~-----~~~l~~~l~~l~--------~~~d~vlVEGAGGl~vPl~~~~~ 127 (223)
T COG0132 63 DLSY--ELINPYRFKEPLSPHLAAELEGRTID-----LEKLSQGLRQLL--------KKYDLVLVEGAGGLLVPLTEEYT 127 (223)
T ss_pred Cccc--ccccceecCCCCCcHHHHhhcCCccc-----HHHHHHHHHhhh--------cccCEEEEeCCCceeeecCCccc
Confidence 7651 12222233322222222222255532 244555544442 378999999544321 112367
Q ss_pred HHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhccc
Q 010866 159 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKL 230 (498)
Q Consensus 159 f~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~Ki 230 (498)
|..=++|++..+ ++.++ + .| |-.- -|=-|++.+++.|+..-++|.-+..+.+.+.-...
T Consensus 128 ~~D~~~~~~lpv----ILV~~-~---~L---GtIN--HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~~~ 186 (223)
T COG0132 128 FADLAVQLQLPV----ILVVG-I---KL---GTIN--HTLLTVEALRARGLPLAGWVANGINPELDHYAEIN 186 (223)
T ss_pred HHHHHHHcCCCE----EEEec-C---Cc---cHHH--HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHHHH
Confidence 888888887653 22222 1 22 2221 45568899999999999999998887777655444
No 166
>PHA02518 ParA-like protein; Provisional
Probab=88.90 E-value=2.4 Score=39.89 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.1
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
=-|.||=.+|+.++..|..+|++|.++-+||.-
T Consensus 9 KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 9 KGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 346799999999999999999999999999974
No 167
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=88.32 E-value=2.5 Score=42.66 Aligned_cols=107 Identities=20% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHHHhhhcCCCCCeEEEEEcccCC-ccchH-HHHHHHHHHcCCcceeeeEEEEecC-CCccccccCCChhhhHHHHHh
Q 010866 283 EWTSRAEICDGLHEPVRIAMVGKYTG-LSDAY-LSILKALLHASVDLRKKLVIDWIPA-CDLEDATEKENPDAYKAAWKL 359 (498)
Q Consensus 283 ~W~~lv~~v~~~~~~v~IaIVgkY~~-l~day-~SI~~AL~~aG~~~~v~v~i~~I~s-e~l~~~~~~~~p~~y~~~~~~ 359 (498)
-|+.+++.... ...||+++. ..+ ..+.| ....++|+..|+.....+. ++. ++. .+| +..+.
T Consensus 16 i~~~~~~lag~--~~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~~l~---i~~r~~a------~~~----~~~~~ 79 (250)
T TIGR02069 16 ILREFVSRAGG--EDAIIVIIT-SASEEPREVGERYITIFSRLGVKEVKILD---VREREDA------SDE----NAIAL 79 (250)
T ss_pred HHHHHHHHhCC--CCceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeEEEe---cCChHHc------cCH----HHHHH
Confidence 45666666543 245899995 432 12222 3567788889986322222 211 111 111 12356
Q ss_pred ccCCCEEEEcCCCCCC-----CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 360 LKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 360 l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
+.++|+|+++||--.+ .-.+...+++.+.+++.|+.|.--|.-+|.
T Consensus 80 l~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 80 LSNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred HhhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 8899999999985332 124566788888889999999999998775
No 168
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=87.33 E-value=7.5 Score=38.56 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=34.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
||.|-|+ +-==|.||=.++..++..|..+|++|-++-+||--|
T Consensus 1 M~iI~v~-n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 1 MKLLTFC-SFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred CeEEEEE-CCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5544443 233467999999999999999999999999999755
No 169
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=87.12 E-value=1.2 Score=44.63 Aligned_cols=37 Identities=32% Similarity=0.250 Sum_probs=35.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
||.|.|+|- |+-||=..+..|-..|+.+|++|..+|-
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 789999998 8999999999999999999999999993
No 170
>PRK10818 cell division inhibitor MinD; Provisional
Probab=87.08 E-value=8.1 Score=38.30 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=34.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|-|-|++ -=.|.||=.+|+.++..|..+|++|-++-+||.
T Consensus 3 kviav~s-~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~ 42 (270)
T PRK10818 3 RIIVVTS-GKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIG 42 (270)
T ss_pred eEEEEEe-CCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5555553 457899999999999999999999999999995
No 171
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=87.07 E-value=1 Score=45.98 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC-C-CeeEEeeecccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC-G-LRVTCIKIDPYL 43 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~-g-~~v~~~K~DpYl 43 (498)
+.|.+.|. +|.||=.+++.|+..+..+ | ++|.++.+|||-
T Consensus 195 ~vi~~vGp--tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGP--TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35667775 8999999999999999876 5 999999999864
No 172
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=86.50 E-value=0.92 Score=45.52 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=33.9
Q ss_pred cCCCEEEEcCC-CCCC---CchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 361 KGADGILVPGG-FGNR---GVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 361 ~~~DGIilpGG-~g~~---~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
..+|.|+|||| +|.. ..+...+.++...+.++++..||-|-
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap 110 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAP 110 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecch
Confidence 67999999999 7764 33456678888888999999999885
No 173
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=86.11 E-value=3 Score=35.13 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=32.2
Q ss_pred eCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 7 TGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 7 tGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
-.|-=.|.||=.+++.++..|..+|.+|-++-+||.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 344456899999999999999999999999999998
No 174
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=85.26 E-value=1.5 Score=44.98 Aligned_cols=43 Identities=35% Similarity=0.519 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd 46 (498)
|| |.|+| =-|+||=.++++++..|..+|+||-++=+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCccc
Confidence 67 77887 788999999999999999999999999999987753
No 175
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=85.16 E-value=5.7 Score=38.57 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
++++| -.|.||=.+++.++..+...|++|-++-.||--+
T Consensus 2 ~~~~g--~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTG--KGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeC--CCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 34444 6899999999999999999999999999998764
No 176
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=84.00 E-value=1.7 Score=43.49 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=39.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
||-|-|+ | =-|+||=.++..|+..|..+|+||-++=+||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 6777777 5 78899999999999999999999999999999885
No 177
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=83.85 E-value=2.4 Score=43.31 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
||.|-|+|- ||-||=..+..|-..|+.+| +|..+|.||-
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h 39 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSGRG-RVGTVKHMDT 39 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHhCC-CEEEEEEcCC
Confidence 788888988 89999999999999999999 9999999993
No 178
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=83.64 E-value=1.6 Score=43.93 Aligned_cols=38 Identities=37% Similarity=0.626 Sum_probs=34.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.|+||.|= -|+||=.++|+||.-|..+|.||..+-+|
T Consensus 3 ~iIVvTSGK-GGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGK-GGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCC-CCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 789999774 68899999999999999999999998765
No 179
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=83.35 E-value=3.1 Score=39.09 Aligned_cols=40 Identities=40% Similarity=0.387 Sum_probs=36.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|+.|-|+|- |+-||-..+.-+-..|+.+|++|..+|.|+.
T Consensus 1 m~vi~i~G~--~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~ 40 (159)
T cd03116 1 MKVIGFVGY--SGSGKTTLLEKLIPALSARGLRVAVIKHDHH 40 (159)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 677888887 8999999999999999999999999999876
No 180
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=83.30 E-value=2.2 Score=42.10 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=39.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd 46 (498)
||-|.|. | =-|.||=.+++-|+..|..+|+||-++-+||-.|.-
T Consensus 1 m~~iav~-~-KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 1 MRQIAIY-G-KGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred CcEEEEE-e-CCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 6778887 5 889999999999999999999999999999998753
No 181
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=82.68 E-value=2.4 Score=42.50 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=40.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~ 47 (498)
||-|.++ | =.|.||=.+|..|+..|..+|+||-++=+||--|.=.
T Consensus 1 ~~~i~~~-g-KGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~ 45 (279)
T PRK13230 1 MRKFCFY-G-KGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTR 45 (279)
T ss_pred CcEEEEE-C-CCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccc
Confidence 6778888 4 8899999999999999999999999999999877633
No 182
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=82.57 E-value=2.1 Score=44.13 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=38.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG 48 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~g 48 (498)
|-|||| ||-||=.++.++..+|+..|.+|.++..|.|-..|--
T Consensus 2 IgItG~--SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~ 44 (277)
T cd02029 2 IAVTGS--SGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERM 44 (277)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCch
Confidence 678996 8999999999999999999999999999999765543
No 183
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.96 E-value=2.5 Score=44.40 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=42.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMS 51 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtms 51 (498)
+++||+|| =.|+||=.+|||++..|-+.|.+|-.+-.||=-|...-...
T Consensus 2 ~riv~f~G--KGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTG--KGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEec--CCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 58999998 47899999999999999999999999999998887655443
No 184
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=81.66 E-value=3.1 Score=41.63 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=48.7
Q ss_pred cCCccchHHHHH---HHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC---Cchh
Q 010866 306 YTGLSDAYLSIL---KALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GVQG 379 (498)
Q Consensus 306 Y~~l~day~SI~---~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~---~~~g 379 (498)
|.+.+-+..|+. +.|+.-.... .++.++++..+..+ | |+ ..-..+++|||.+-+ .+.+
T Consensus 6 Yn~~GvSp~~lkhtv~sLr~~~~p~---y~v~~V~~~~Li~E-----p------W~--~~T~lLV~pGGaDlpY~~~l~g 69 (253)
T COG4285 6 YNGLGVSPYSLKHTVRSLRLFAPPY---YAVDRVDAQFLIKE-----P------WE--ETTLLLVFPGGADLPYVQVLQG 69 (253)
T ss_pred eCCCCCChHHHHHHHHHHHhhccch---heEEEeeeheeecC-----c------ch--hceEEEEecCCCCchHHHHhcc
Confidence 433443445554 5555444333 45677888777542 2 42 345678999998765 2344
Q ss_pred HH-HHHHHHHHcCCCEEeehHHH
Q 010866 380 KI-LAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 380 ~i-~~i~~a~e~~iPiLGIClGm 401 (498)
.+ +.|....+++--+||||.|-
T Consensus 70 ~g~a~i~~yvk~GG~fLGiCAG~ 92 (253)
T COG4285 70 LGTARIKNYVKEGGNFLGICAGG 92 (253)
T ss_pred hhhhhHHHHHhcCCeEEEEeccc
Confidence 43 34566677888999999874
No 185
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=81.14 E-value=4 Score=36.82 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
.+|+|| .+.||=.+++-+-+.|+.+|++|...|-.+.
T Consensus 2 ~~~~~~---~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~ 38 (134)
T cd03109 2 MGFGTG---TDIGKTVATAILARALKEKGYRVAPLKPVQT 38 (134)
T ss_pred EEEeCC---CCcCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 378998 5699999999999999999999999998876
No 186
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=80.53 E-value=2.4 Score=43.86 Aligned_cols=42 Identities=26% Similarity=0.473 Sum_probs=35.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
||+||++|= =|+||=.+||+++..+..+|.+|-++-+||-=|
T Consensus 1 ~r~~~~~GK--GGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGK--GGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEES--TTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecC--CCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 799999973 377999999999999999999999999999543
No 187
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=79.76 E-value=2.8 Score=38.70 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=30.9
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 10 v~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
.-.|.||=.+|+.++..|..+|++|-++.+||.-+
T Consensus 6 ~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~ 40 (195)
T PF01656_consen 6 GKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAP 40 (195)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSH
T ss_pred CCCCccHHHHHHHHHhccccccccccccccCcccc
Confidence 35789999999999999999999999999999654
No 188
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=79.09 E-value=9.3 Score=37.44 Aligned_cols=107 Identities=17% Similarity=0.096 Sum_probs=64.3
Q ss_pred HHHHHhhhcCCCCCeEEEEEcccCCc-cch-HHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhcc
Q 010866 284 WTSRAEICDGLHEPVRIAMVGKYTGL-SDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK 361 (498)
Q Consensus 284 W~~lv~~v~~~~~~v~IaIVgkY~~l-~da-y~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~ 361 (498)
|+.+.+... +...+|+++. +..- .+. .....++++..|+.....+ .....+. ..+| +..+.+.
T Consensus 18 ~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~~~-----~~~~~~~---a~~~----~~~~~l~ 82 (217)
T cd03145 18 LQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVEVL-----VIDSREA---ANDP----EVVARLR 82 (217)
T ss_pred HHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeEEe-----ccCChHH---cCCH----HHHHHHH
Confidence 445555543 2356899995 5321 122 2346677788887533221 1111110 0112 1235688
Q ss_pred CCCEEEEcCCCCCC-----CchhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 362 GADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 362 ~~DGIilpGG~g~~-----~~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
++|+|+++||--.. .-.+...+++.+.+++.|+.|.--|.-++.
T Consensus 83 ~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 83 DADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred hCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 99999999974322 113567788888889999999999988876
No 189
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=78.84 E-value=3.1 Score=45.31 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=36.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
+.|.++| ..|.||=.+++.|+..|+.+|++|.++-.|||=
T Consensus 101 ~vi~lvG--~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVG--LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4677788 799999999999999999999999999999985
No 190
>PRK11670 antiporter inner membrane protein; Provisional
Probab=78.67 E-value=18 Score=38.48 Aligned_cols=45 Identities=29% Similarity=0.418 Sum_probs=37.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDA 47 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~ 47 (498)
|.|-|+.| =-|.||=.+|+.|+..|...|+||-++-+|||-|-=+
T Consensus 108 ~vIaV~S~-KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~ 152 (369)
T PRK11670 108 NIIAVSSG-KGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIP 152 (369)
T ss_pred EEEEEeCC-CCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence 44555544 3678999999999999999999999999999987433
No 191
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=78.65 E-value=3.7 Score=38.24 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.|+|- +|-||-..+..+...|+.+|++|..+|-|
T Consensus 2 i~i~G~--~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGP--KNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 455664 79999999999999999999999999987
No 192
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.51 E-value=3.6 Score=44.89 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=34.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHH-HHHCCCeeEEeeeccccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVL-LKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~l-l~~~g~~v~~~K~DpYlN 44 (498)
+.|+++| .+|.||..+++.++.. +..+|.+|.++-+|+|=.
T Consensus 224 ~vi~lvG--ptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVG--PTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4577887 6899999999999974 478899999999999753
No 193
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=77.10 E-value=4.9 Score=38.21 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=36.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
+|-|+||++ -.|.||=.+++.++..|..+|++|-++-.||+-
T Consensus 17 ~kvI~v~s~-kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 17 IKVLLITSV-KPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CcEEEEecC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 477888754 467899999999999999999999999999974
No 194
>PRK07667 uridine kinase; Provisional
Probab=76.26 E-value=5.3 Score=38.10 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=36.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
.|.++|+ ||-||-..|..|...|+..|.+|..+.+|.|+.
T Consensus 19 iIgI~G~--~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 19 ILGIDGL--SRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 5788886 677999999999999999999999999999874
No 195
>CHL00175 minD septum-site determining protein; Validated
Probab=76.18 E-value=5.3 Score=40.00 Aligned_cols=45 Identities=31% Similarity=0.512 Sum_probs=38.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDA 47 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY-lNvd~ 47 (498)
|.|+|++| --|.||=.+|+.++..|..+|++|-++-+||- -|++.
T Consensus 16 ~vi~v~s~-KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 16 RIIVITSG-KGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDL 61 (281)
T ss_pred eEEEEEcC-CCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhh
Confidence 67777765 46899999999999999999999999999996 45553
No 196
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=76.04 E-value=4.8 Score=42.32 Aligned_cols=42 Identities=26% Similarity=0.463 Sum_probs=38.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
+|-|.||| -.|.||=.+++.++..|..+|++|-++-.||+-+
T Consensus 31 ~~ii~v~g--kgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~ 72 (329)
T cd02033 31 TQIIAIYG--KGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72 (329)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccc
Confidence 36788885 7999999999999999999999999999999964
No 197
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=75.99 E-value=5.3 Score=37.82 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=37.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd 46 (498)
|.|+| .||-||-..|.+|...|+..|.+|..+.+|=|..-.
T Consensus 2 i~i~G--~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~ 42 (179)
T cd02028 2 VGIAG--PSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR 42 (179)
T ss_pred EEEEC--CCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence 77888 588899999999999999999999999999998754
No 198
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=75.74 E-value=4.9 Score=40.11 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=38.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYLNT 45 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~-~g~~v~~~K~DpYlNv 45 (498)
+|.|-|+ | =.|+||=.++..||..|.. +|+||-++-+||-.|-
T Consensus 2 ~~vIav~-~-KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 2 TRKIAIY-G-KGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred ceEEEEE-c-CCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 3778888 6 8899999999999999997 6999999999999774
No 199
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=75.00 E-value=5.8 Score=35.20 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=33.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|.++|. +|.||=..++.++..|..+|.+|-++-.||
T Consensus 2 i~~~Gk--gG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGK--GGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECC--CCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 677885 899999999999999999999999999999
No 200
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=74.69 E-value=5.5 Score=41.56 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=35.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+.|.++| .+|.||=.+++.|+..|+.+|.+|.++-.|+|
T Consensus 115 ~vi~lvG--pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVG--VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4677787 89999999999999999999999999999984
No 201
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=74.14 E-value=2.9 Score=38.52 Aligned_cols=73 Identities=19% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-----CchhHHHHHHHHHH
Q 010866 315 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYARE 389 (498)
Q Consensus 315 SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~e 389 (498)
.+.++|+..|+++.. ++-.+.+ ..+..+.+.++|+|++.||--.. ...+..++|+.+..
T Consensus 4 ~~~~~f~~~g~~v~~------l~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQ------LDLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EEEE------CCCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEE------EeccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 467788889977432 2332211 11334677899999999974322 11467888999999
Q ss_pred cCCCEEeehHHHHH
Q 010866 390 HRIPYLGICLGMQV 403 (498)
Q Consensus 390 ~~iPiLGIClGmQl 403 (498)
++.|+.|.--|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 99999999999854
No 202
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.04 E-value=5.8 Score=41.00 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=28.7
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
..+|-++.-||=|. .+.+++.+...++|+|||=+|.
T Consensus 63 ~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 63 GSADMVISIGGDGT-----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEecCC
Confidence 36899999998553 5667777777799999999885
No 203
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=73.22 E-value=7 Score=38.82 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
|-|-|. | =-|.||=.+++.|+..|..+|+||-++-+||=.|.
T Consensus 3 ~iIav~-~-KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~ 44 (270)
T PRK13185 3 LVLAVY-G-KGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDS 44 (270)
T ss_pred eEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcch
Confidence 677777 6 89999999999999999999999999999995443
No 204
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=73.05 E-value=6.2 Score=39.89 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc------cccCCC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP------YLNTDA 47 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp------YlNvd~ 47 (498)
||-|.|.| +=-|.||=.++|.++..|+..|.+|-+|-+|| .+|+|.
T Consensus 1 M~~iai~s-~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~ 52 (243)
T PF06564_consen 1 MKVIAIVS-PKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPL 52 (243)
T ss_pred CcEEEEec-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCC
Confidence 77788774 56688999999999999999999999999999 566653
No 205
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=72.80 E-value=8 Score=37.13 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=35.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCeeEEeeecccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTCIKIDPYL 43 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~-~g~~v~~~K~DpYl 43 (498)
+|-|.||| .-+|.||=.+|+.|+..|.. +|++|-++-.||.-
T Consensus 35 ~~vi~v~s-~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 35 NNLIMVTS-SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CeEEEEEC-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35566664 45899999999999999975 79999999999974
No 206
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=72.76 E-value=6.6 Score=39.30 Aligned_cols=43 Identities=28% Similarity=0.431 Sum_probs=38.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
||-|-|. | =-|+||=.++..||..|..+|+||-++-+||=.|-
T Consensus 1 m~~iav~-~-KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 1 MRKVAIY-G-KGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred CCEEEEe-C-CCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 5667777 5 88999999999999999999999999999998874
No 207
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=72.51 E-value=6.5 Score=36.25 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
++|++.| ..|-||+..+..|...|..+|++|.....
T Consensus 1 ~~I~ieG--~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 1 MFIVFEG--IDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred CEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5788998 67899999999999999999999966554
No 208
>PRK13236 nitrogenase reductase; Reviewed
Probab=71.51 E-value=7.2 Score=39.91 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=36.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
+-|-| +| =-|+||=.+|+.|+..|..+|+||-++=+||..|-
T Consensus 7 ~~~~~-~G-KGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAF-YG-KGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEE-EC-CCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 34444 44 67899999999999999999999999999999864
No 209
>PRK10037 cell division protein; Provisional
Probab=71.48 E-value=6.4 Score=38.88 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=33.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
||-| -...-=-|.||=.+|+.|+..|..+|+||-++-+||=
T Consensus 1 ~~~i-av~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 1 MAIL-GLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred CcEE-EEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 5533 3333445789999999999999999999999999994
No 210
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=71.02 E-value=7.2 Score=42.23 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=35.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+.|.++|- +|.||=.+++.|+..+..+|.+|.++-.|||
T Consensus 207 ~ii~lvGp--tGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 207 RIISLIGQ--TGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 56788884 6999999999999999999999999999998
No 211
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=70.99 E-value=6.3 Score=35.93 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=30.8
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 9 gv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+-=+|.||=.+|+.++..|..+|++|-++-+||-
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3457899999999999999999999999999885
No 212
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=70.88 E-value=8.2 Score=39.48 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=36.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
||-|-|. | =.|+||=.+++.|+..|...|+||-++-+||-.|-
T Consensus 4 ~~~iai~-~-KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 4 LRQIAFY-G-KGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred ceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4555554 3 67899999999999999999999999999998665
No 213
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.48 E-value=7.1 Score=42.38 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~--~~g~~v~~~K~DpY 42 (498)
+.|++.|- +|.||=.+++.|+..+. ..|++|.++.+|||
T Consensus 222 ~~i~~vGp--tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 222 GVVALVGP--TGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35666665 89999999999998886 67899999999998
No 214
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=69.40 E-value=8.9 Score=36.85 Aligned_cols=42 Identities=24% Similarity=0.448 Sum_probs=37.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd 46 (498)
-|.|+| =-|.||=.+++.|+..|..+|+||-++-.||-.|.=
T Consensus 2 ~iav~g--KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYG--KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEEC--CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 377884 889999999999999999999999999999998753
No 215
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.94 E-value=9.5 Score=39.75 Aligned_cols=94 Identities=28% Similarity=0.322 Sum_probs=50.9
Q ss_pred EEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCC----ChhhhHHHHHhccCCCEEEEcCCC
Q 010866 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----NPDAYKAAWKLLKGADGILVPGGF 372 (498)
Q Consensus 299 ~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~----~p~~y~~~~~~l~~~DGIilpGG~ 372 (498)
+|+++.+...-. +....+.+.|...|+++.+. -. .+..+....... +-+.|.........+|.++.-||=
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVL--DA--EAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--ec--hhhhhcccccccccccccccccchhhcccCCCEEEEEcCC
Confidence 699997654211 12345667788888776543 00 111110000000 000000001223468999999986
Q ss_pred CCCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 373 GNRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 373 g~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
|. .+.+++.+...++|+|||=+|.
T Consensus 83 GT-----~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 83 GT-----ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred HH-----HHHHHHHhccCCCcEEEEecCC
Confidence 53 5667777777899999998874
No 216
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=68.85 E-value=11 Score=37.44 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=35.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
|.|+ | =.|.||=.+|+.|+..|..+|+||-++-+||=.|.
T Consensus 3 i~v~-g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~ 42 (267)
T cd02032 3 LAVY-G-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDS 42 (267)
T ss_pred EEEe-c-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 5556 4 88999999999999999999999999999995543
No 217
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=68.68 E-value=16 Score=34.59 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=51.7
Q ss_pred HhhHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHHH-HHhcccCCCCCCCccEEEEeeCccccccCcch-
Q 010866 92 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWIE-RVAMIPVDGKEGPVDVCVIELGGTIGDIESMP- 158 (498)
Q Consensus 92 ~iy~~vi~kER~g~ylG~tvQviPH------it-----~ei~~~i~-~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~p- 158 (498)
..|...++....-.+.+..++|+.. ++ .....|+. .+. ...+||.|+|.+|.- |+-...
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~------~~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVL------SQPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHh------cCCCCCEEEEecccc--ccccccc
Confidence 5677777655444455566666543 11 24445553 443 134699999998864 753322
Q ss_pred -----------HHHHHHHhhhhcCCCCEEEEEEeeeeee
Q 010866 159 -----------FIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (498)
Q Consensus 159 -----------f~ea~rq~~~~~g~~n~~~ih~t~vp~~ 186 (498)
|.+.+++|-....+.+.-.|.+|+-|+-
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~ 131 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPFE 131 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 6777777777665555556666666643
No 218
>PLN02929 NADH kinase
Probab=67.56 E-value=7.3 Score=40.64 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHc
Q 010866 311 DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREH 390 (498)
Q Consensus 311 day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~ 390 (498)
++...+.+.|+.+|+++... ...++ . +.+.++|.+|.-||=|. .+.+++.+ ..
T Consensus 34 ~~~~~~~~~L~~~gi~~~~v------~r~~~-~--------------~~~~~~Dlvi~lGGDGT-----~L~aa~~~-~~ 86 (301)
T PLN02929 34 DTVNFCKDILQQKSVDWECV------LRNEL-S--------------QPIRDVDLVVAVGGDGT-----LLQASHFL-DD 86 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEe------ecccc-c--------------cccCCCCEEEEECCcHH-----HHHHHHHc-CC
Confidence 35567788899999876432 11111 0 24567899999998553 45667777 77
Q ss_pred CCCEEeehHH
Q 010866 391 RIPYLGICLG 400 (498)
Q Consensus 391 ~iPiLGIClG 400 (498)
++|++||=.|
T Consensus 87 ~iPvlGIN~G 96 (301)
T PLN02929 87 SIPVLGVNSD 96 (301)
T ss_pred CCcEEEEECC
Confidence 8999999887
No 219
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=67.41 E-value=6.1 Score=40.64 Aligned_cols=43 Identities=33% Similarity=0.471 Sum_probs=39.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTD 46 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd 46 (498)
|||||-|= -|+||=..++||+.-|..-+-+|-+|--||--|+-
T Consensus 20 KwifVGGK--GGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlS 62 (323)
T KOG2825|consen 20 KWIFVGGK--GGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLS 62 (323)
T ss_pred eEEEEcCc--CCcCccchhhHHHHHHhccCCceEEeecCcccchH
Confidence 99999763 57899999999999999999999999999998874
No 220
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=67.34 E-value=12 Score=38.59 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=50.3
Q ss_pred EEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC
Q 010866 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (498)
Q Consensus 299 ~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~ 376 (498)
+|+++.+...-. .....+.+.|+..|+.+.+. .. .+..+.... .+ .+ ...+....+|.+|.-||=|.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~--~~--~~~~~~~~~---~~-~~-~~~~~~~~~d~vi~~GGDGt-- 75 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE--AD--TARNIGLTG---YP-AL-TPEEIGARADLAVVLGGDGT-- 75 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--cc--hhhhcCccc---cc-cc-ChhHhccCCCEEEEECCcHH--
Confidence 599997665321 13456777888888765542 00 011010000 00 00 00122246899999998552
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHH
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
...+++.+...++|+|||=.|.
T Consensus 76 ---~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 ---MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ---HHHHHHHhcCCCCCEEEEcCCC
Confidence 5567776666789999998885
No 221
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=66.05 E-value=8.9 Score=41.23 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=34.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
|-|.|+ .-=-|.||=.++..|+..|..+|+||-+|-+||--|.
T Consensus 122 ~vIav~-n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~l 164 (405)
T PRK13869 122 QVIAVT-NFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred eEEEEE-cCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCH
Confidence 444444 2234679999999999999999999999999997554
No 222
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=66.04 E-value=13 Score=35.66 Aligned_cols=38 Identities=26% Similarity=0.216 Sum_probs=32.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
+.|-|+|. ||-||=..+..|-.+|+.+|++|..+|.+.
T Consensus 7 ~ii~ivG~--sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 7 PLLAIAAW--SGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred eEEEEECC--CCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 45667774 999999999999999999999999999754
No 223
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=65.28 E-value=6.7 Score=38.89 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=37.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
||-|-|. | =.|.||=.+++.|+..|..+| +|-++-+||=-|.
T Consensus 2 ~~~iav~-~-KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~ 43 (264)
T PRK13231 2 MKKIAIY-G-KGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADT 43 (264)
T ss_pred ceEEEEE-C-CCCCcHHHHHHHHhcccCCCC-EEEEEeEccCccc
Confidence 5777777 6 899999999999999999999 9999999998654
No 224
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=64.62 E-value=12 Score=37.39 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=37.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
-|.|.| =-|.||=.+|..|+..|..+|+||-++-+||=.|.
T Consensus 2 ~ia~~g--KGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYG--KGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeC--CCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 467774 78999999999999999999999999999998875
No 225
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=64.56 E-value=5.8 Score=38.08 Aligned_cols=29 Identities=38% Similarity=0.728 Sum_probs=21.3
Q ss_pred cCCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 010866 11 VSGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~--g~~v~~~K~ 39 (498)
.-|=|||.|+|++|..|++. |+||.++.|
T Consensus 9 ytG~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 9 YTGDGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EESSSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EeCCCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 34679999999999999985 568887765
No 226
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=64.28 E-value=11 Score=41.15 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
..|+++| .-|.||=.+++-++..|+..|++|.++-+|+|
T Consensus 96 ~vI~lvG--~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 96 QTIMLVG--LQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred eEEEEEC--CCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3677887 68999999999999999999999999999986
No 227
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.85 E-value=16 Score=37.98 Aligned_cols=91 Identities=18% Similarity=0.124 Sum_probs=49.8
Q ss_pred EEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCC-Ccc--ccccCCChhhhHHHHHhccCCCEEEEcCCCC
Q 010866 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPAC-DLE--DATEKENPDAYKAAWKLLKGADGILVPGGFG 373 (498)
Q Consensus 299 ~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se-~l~--~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g 373 (498)
+|+++.+...-. +....+.+.|+..|+.+.+. -.....+ ... ..... +....+....+|.+|.-||=|
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~vi~lGGDG 79 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLD--EVGIKEGCIYTQDTVGCH-----IVNKTELGQYCDLVAVLGGDG 79 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--cccccccchhcccccccc-----ccchhhcCcCCCEEEEECCcH
Confidence 599997654211 12345667788888776543 0000000 000 00000 000012223689999999855
Q ss_pred CCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 374 NRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 374 ~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
. .+.+++.+...++|+|||=+|.
T Consensus 80 T-----~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 T-----FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred H-----HHHHHHHhcccCCCEEEEecCC
Confidence 3 5567777767799999999886
No 228
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=62.87 E-value=9.2 Score=39.36 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 12 SGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 12 S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
-|+||=.|+|.|...|..+|+||-.+=+||--
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred CCcccChhhhHHHHHHHhccceeeEecccCCC
Confidence 37999999999999999999999999999963
No 229
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=62.62 E-value=13 Score=38.17 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=35.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
|.|.|. | =-|.||=.+|+.|+..|..+|+||-++-+||=.|
T Consensus 1 ~vIav~-g-KGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 1 RIIAIY-G-KGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CEEEEE-C-CCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCC
Confidence 346666 4 6899999999999999999999999999999554
No 230
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=62.28 E-value=1.8e+02 Score=29.83 Aligned_cols=142 Identities=16% Similarity=0.204 Sum_probs=85.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKL 82 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~l 82 (498)
.|.+.|. +|.||=.+...|+..|..+|.+|..+-+|||- .| .+++
T Consensus 77 ~i~~~G~--~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-----------i~----------------~~~q------ 121 (270)
T PRK06731 77 TIALIGP--TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-----------IG----------------TVQQ------ 121 (270)
T ss_pred EEEEECC--CCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-----------HH----------------HHHH------
Confidence 5677776 89999999999999999999999999888652 11 1111
Q ss_pred CCCCcccchHhhHHHHhhhhcCCCCCCeeEEcc-cchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHHH
Q 010866 83 TRDNNITTGKIYQSVIDKERKGDYLGKTVQVVP-HITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIE 161 (498)
Q Consensus 83 ~~~~n~t~G~iy~~vi~kER~g~ylG~tvQviP-Hit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~e 161 (498)
.. + .++-+| +.+++ .=.+++.+.+..++. ..+.|+|||.-.|..-. ...-++
T Consensus 122 --------------l~--~-~~~~~~--~~~~~~~~~~~l~~~l~~l~~------~~~~D~ViIDt~Gr~~~--~~~~l~ 174 (270)
T PRK06731 122 --------------LQ--D-YVKTIG--FEVIAVRDEAAMTRALTYFKE------EARVDYILIDTAGKNYR--ASETVE 174 (270)
T ss_pred --------------HH--H-HhhhcC--ceEEecCCHHHHHHHHHHHHh------cCCCCEEEEECCCCCcC--CHHHHH
Confidence 10 1 111233 33333 224567777777752 34689999999998631 134567
Q ss_pred HHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 010866 162 ALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (498)
Q Consensus 162 a~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~R 217 (498)
.++++.....++ .+|+. +.++ .|..=.+.-++.+++ +.++++|.-
T Consensus 175 el~~~~~~~~~~---~~~LV----l~a~--~~~~d~~~~~~~f~~--~~~~~~I~T 219 (270)
T PRK06731 175 EMIETMGQVEPD---YICLT----LSAS--MKSKDMIEIITNFKD--IHIDGIVFT 219 (270)
T ss_pred HHHHHHhhhCCC---eEEEE----EcCc--cCHHHHHHHHHHhCC--CCCCEEEEE
Confidence 777776555443 23432 3321 121223445566655 677888775
No 231
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=61.93 E-value=15 Score=36.35 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=31.9
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
=-|.||=.+++.|+..|..+|+||-++-+||=.|.
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~ 42 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS 42 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence 67899999999999999999999999999996554
No 232
>PRK06696 uridine kinase; Validated
Probab=61.28 E-value=18 Score=35.16 Aligned_cols=41 Identities=27% Similarity=0.353 Sum_probs=36.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv 45 (498)
.|.|+| .||-||-..|..|...|...|.+|..+-+|=|..-
T Consensus 24 iI~I~G--~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 24 RVAIDG--ITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 567777 58889999999999999999999999999999863
No 233
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=60.45 E-value=17 Score=35.17 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=30.9
Q ss_pred HhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 358 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 358 ~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
+.|+++|.||+....++.-.....++++...+++.+++||.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4689999999998776433345677888889999999999943
No 234
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=60.16 E-value=8 Score=37.41 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCcchHHHHHHHHHHHHHC--CCeeEEeee
Q 010866 12 SGLGKGVTASSIGVLLKAC--GLRVTCIKI 39 (498)
Q Consensus 12 S~lGkGi~~as~g~ll~~~--g~~v~~~K~ 39 (498)
-|=|||.|+|++|..|++. |+||.++.|
T Consensus 28 tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 28 TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 3569999999999999984 678888766
No 235
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.10 E-value=23 Score=39.98 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=51.4
Q ss_pred CCCeEEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCC
Q 010866 295 HEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (498)
Q Consensus 295 ~~~v~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~ 372 (498)
.++.+|+++.+...-. +....+.+.|+..|+.+.+. ...+..+... .+..+. ....+.++|.+|.-||=
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~----~~~~~~~~~~----~~~~~~-~~~~~~~~dlvi~lGGD 358 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELE----SFLYNKLKNR----LNEECN-LIDDIEEISHIISIGGD 358 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEe----chhhhhhccc----cccccc-ccccccCCCEEEEECCc
Confidence 3456899997654211 12345667777777765442 0001111100 000000 00123468999999985
Q ss_pred CCCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 373 GNRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 373 g~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
|. .+.+++.+...++|+|||=+|.
T Consensus 359 GT-----~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 359 GT-----VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred HH-----HHHHHHHhcCCCCCEEEEcCCC
Confidence 53 5667777777799999998875
No 236
>PRK01184 hypothetical protein; Provisional
Probab=59.32 E-value=12 Score=34.98 Aligned_cols=28 Identities=36% Similarity=0.431 Sum_probs=21.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
|+.|++||+.-|| |+..+ ++++..|+.+
T Consensus 1 ~~~i~l~G~~GsG--KsT~a----~~~~~~g~~~ 28 (184)
T PRK01184 1 MKIIGVVGMPGSG--KGEFS----KIAREMGIPV 28 (184)
T ss_pred CcEEEEECCCCCC--HHHHH----HHHHHcCCcE
Confidence 7889999997664 88753 3788888755
No 237
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.87 E-value=12 Score=36.13 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=39.2
Q ss_pred cCCCEEEEcCCCCCC-C------------c-hhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchh
Q 010866 361 KGADGILVPGGFGNR-G------------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (498)
Q Consensus 361 ~~~DGIilpGG~g~~-~------------~-~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v 412 (498)
..+|++++|||||.. . + .....+++...+.++|+-=||.---|+..-||.-+
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 457999999999963 1 1 23555666677889999999998888887776554
No 238
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.26 E-value=16 Score=35.99 Aligned_cols=36 Identities=31% Similarity=0.417 Sum_probs=30.1
Q ss_pred CccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 010866 9 GVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (498)
Q Consensus 9 gv~S~lGkGi~~as~g~ll~-~~g~~v~~~K~DpYlN 44 (498)
..==|.||..+|.-+|..|. .+|+||-.+-+||=-|
T Consensus 9 n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s 45 (259)
T COG1192 9 NQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGS 45 (259)
T ss_pred ecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcch
Confidence 33346799999999999999 6779999999999533
No 239
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=58.11 E-value=67 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=21.2
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++||||+.+.- . ......+..+.+.++|+..+
T Consensus 59 ~~vdgiIi~~~~--~--~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 59 QGVDAIIINPAS--P--TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred cCCCEEEEeCCC--h--hhhHHHHHHHHHCCCeEEEE
Confidence 479999997631 1 11123456677788998875
No 240
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.03 E-value=19 Score=37.20 Aligned_cols=86 Identities=28% Similarity=0.251 Sum_probs=49.2
Q ss_pred EEEEEcccCC-ccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 299 RIAMVGKYTG-LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 299 ~IaIVgkY~~-l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
+|+++.+... .......+.+.|+..|+++.+. . ..+..+.. + .+. ..+...++|-+|.-||=|.
T Consensus 12 ~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~--~--~~~~~~~~------~-~~~-~~~~~~~~Dlvi~iGGDGT--- 76 (287)
T PRK14077 12 KIGLVTRPNVSLDKEILKLQKILSIYKVEILLE--K--ESAEILDL------P-GYG-LDELFKISDFLISLGGDGT--- 76 (287)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEe--c--chhhhhcc------c-ccc-hhhcccCCCEEEEECCCHH---
Confidence 6999865442 1112245666777777766543 0 01111100 0 000 0022246899999998552
Q ss_pred hhHHHHHHHHHHcCCCEEeehHHH
Q 010866 378 QGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
.+.+++.+...++|+|||=.|.
T Consensus 77 --~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 --LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred --HHHHHHHhcCCCCcEEEEeCCC
Confidence 5677777777899999999886
No 241
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.44 E-value=21 Score=37.25 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=27.9
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
..+|-+|.-||=|. .+.+++.+...++|+|||=+|
T Consensus 67 ~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 67 SSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred cCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEeCC
Confidence 46899999998652 566777777789999999876
No 242
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=56.56 E-value=49 Score=31.88 Aligned_cols=73 Identities=27% Similarity=0.452 Sum_probs=56.7
Q ss_pred cchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccc--------------ccc
Q 010866 89 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI--------------GDI 154 (498)
Q Consensus 89 t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTv--------------Gdi 154 (498)
+||++-.+.++. .|... ...++||-=-+.|+..+..+.. .. .|++|+ .|||= =|-
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499999888854 67777 7889999999999999999873 33 777665 89982 232
Q ss_pred Ccch-HHHHHHHhhhhc-CCC
Q 010866 155 ESMP-FIEALGQFSYRV-GPG 173 (498)
Q Consensus 155 Es~p-f~ea~rq~~~~~-g~~ 173 (498)
| +| |=|++|++.++. |..
T Consensus 96 e-ipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 E-IPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred c-CCcHHHHHHHhhhhcCCCc
Confidence 2 45 999999999998 543
No 243
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=56.44 E-value=20 Score=37.95 Aligned_cols=40 Identities=30% Similarity=0.203 Sum_probs=35.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+|.|-|+|. ||-||=.....+-..|+.+||+|..+|-|.-
T Consensus 205 ~~~~~~~g~--~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h 244 (366)
T PRK14489 205 PPLLGVVGY--SGTGKTTLLEKLIPELIARGYRIGLIKHSHH 244 (366)
T ss_pred ccEEEEecC--CCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence 467888884 9999999999999999999999999997753
No 244
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=56.24 E-value=14 Score=35.04 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.9
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCe----eEEeeecccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLR----VTCIKIDPYL 43 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~----v~~~K~DpYl 43 (498)
|.|+|+ ||-||-..|..|..+|...|.. +..+-+|-|.
T Consensus 2 IgI~G~--sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGP--SGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEES--TTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECC--CCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 778886 6779999999999999999998 7777777765
No 245
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=55.60 E-value=26 Score=31.27 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=31.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|.|-|+| ..+|.||-..|..++..|..+|.+|-.+-+|++
T Consensus 1 k~i~v~s-~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 1 KVIAVWS-PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp EEEEEEE-SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 4555654 567899999999999999999999999988874
No 246
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.90 E-value=17 Score=33.75 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=28.4
Q ss_pred HhccCCCEEEEcCCCCCCCchhHHHHHHHHHH--cCCCEEeehH
Q 010866 358 KLLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 399 (498)
Q Consensus 358 ~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e--~~iPiLGICl 399 (498)
+.+..+|.|+|-||-.-|...-..+-+++..+ .++|+.|+|.
T Consensus 81 e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 34567999999999877743333344444443 5679999995
No 247
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.46 E-value=26 Score=36.22 Aligned_cols=89 Identities=22% Similarity=0.163 Sum_probs=49.1
Q ss_pred EEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC
Q 010866 299 RIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (498)
Q Consensus 299 ~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~ 376 (498)
+|+++.+...-. .....+.+.|+..|+.+.+. -. .+..+....... . ...+...++|.++.-||=|.
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~--~~--~~~~~~~~~~~~----~-~~~~~~~~~d~vi~lGGDGT-- 75 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVE--QQ--IAHELQLKNVKT----G-TLAEIGQQADLAIVVGGDGN-- 75 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEe--cc--hhhhcCcccccc----c-chhhcCCCCCEEEEECCcHH--
Confidence 599997654211 12245666787788765542 00 011110000000 0 00122346899999998553
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHH
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
.+.+++.+...++|+|||=+|.
T Consensus 76 ---~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 76 ---MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred ---HHHHHHHhcCCCCeEEEEECCC
Confidence 4566666666789999999887
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=53.96 E-value=26 Score=33.84 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=33.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
|.|++-| .+|.||=.|+|=|+..++.+|.+|.++-+|.|-
T Consensus 2 ~vi~lvG--ptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 2 KVIALVG--PTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEEE--STTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEEEC--CCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 5667777 479999999999999999999999999999885
No 249
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=52.46 E-value=25 Score=35.52 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.5
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|.+..+-=.|.||=.+|+.++..|..+|.+|.++-.||=
T Consensus 4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 444444568999999999999999999999999999985
No 250
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=52.08 E-value=1.1e+02 Score=28.07 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
--|.||=.+|+.|+..| ++|-++-.||..
T Consensus 8 kgG~GKSt~a~nLA~~l----~~vlliD~D~~~ 36 (179)
T cd03110 8 KGGTGKTTVTAALAALL----KNVVLADCDVDA 36 (179)
T ss_pred CCCCCHHHHHHHHHHHH----hCcEEEECCCCC
Confidence 46889999999999999 899999999873
No 251
>PRK06179 short chain dehydrogenase; Provisional
Probab=51.64 E-value=17 Score=35.45 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=26.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|.|+||||- |+||+ ++.+.|.++|++|...--||
T Consensus 5 ~~vlVtGas-g~iG~-----~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGAS-SGIGR-----ATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CEEEEecCC-CHHHH-----HHHHHHHHCCCEEEEEeCCh
Confidence 679999985 77775 45567788999999877665
No 252
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=51.21 E-value=24 Score=38.89 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=34.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
||.|=|+|= |+-||-....-|-..|+.+||+|..||=|.
T Consensus 1 MkVi~IvG~--sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGW--KDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEec--CCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 677778884 899999999999999999999999999654
No 253
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=50.99 E-value=23 Score=35.66 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=27.7
Q ss_pred CEEEEEeCCccCCcchHHHHH-HHHHHHHHCCCeeEEee
Q 010866 1 MKYVLVTGGVVSGLGKGVTAS-SIGVLLKACGLRVTCIK 38 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~a-s~g~ll~~~g~~v~~~K 38 (498)
||.+|++||+ |-.+..+ .+..-|+.+|+.|+++-
T Consensus 1 ~~i~~~~g~~----~g~~~~~~~La~~L~~~g~eV~vv~ 35 (348)
T TIGR01133 1 KKVVLAAGGT----GGHIFPALAVAEELIKRGVEVLWLG 35 (348)
T ss_pred CeEEEEeCcc----HHHHhHHHHHHHHHHhCCCEEEEEe
Confidence 7888999988 4455544 89999999999998874
No 254
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=50.90 E-value=29 Score=32.37 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
++|+|+|. .|-||...+..|..-|...|++|...
T Consensus 4 ~~IvieG~--~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 4 MFIVIEGI--DGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 79999995 68899999999999999999998643
No 255
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=50.84 E-value=16 Score=36.54 Aligned_cols=91 Identities=23% Similarity=0.262 Sum_probs=57.6
Q ss_pred CeEEEEEcccCCcc---chHH-HHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCC
Q 010866 297 PVRIAMVGKYTGLS---DAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 372 (498)
Q Consensus 297 ~v~IaIVgkY~~l~---day~-SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~ 372 (498)
..+|+++- +-.-. +-|. ...++|+..|+.+.-. +..+ .| -.+....+.+.|.|.+.||-
T Consensus 32 ~~~i~FIP-tAs~~~~~~~Yv~k~~~~l~~lg~~v~~L------~l~~--------~~--~~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFIP-TASVDSEDDFYVEKVRNALAKLGLEVSEL------HLSK--------PP--LAAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEEe-cCccccchHHHHHHHHHHHHHcCCeeeee------eccC--------CC--HHHHHHhhhhccEEEECCch
Confidence 45899994 54221 1232 4678999999876422 1111 11 11223457779999999973
Q ss_pred CCC-----CchhHHHHHHHHHHcCCCEEeehHHHHHH
Q 010866 373 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVA 404 (498)
Q Consensus 373 g~~-----~~~g~i~~i~~a~e~~iPiLGIClGmQll 404 (498)
=-- ...|..+.|+++.++++|+.|+--|.-+.
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceee
Confidence 211 12578889999999999999998765443
No 256
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.66 E-value=27 Score=35.76 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=48.5
Q ss_pred eEEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHh-ccCCCEEEEcCCCCC
Q 010866 298 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGN 374 (498)
Q Consensus 298 v~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~-l~~~DGIilpGG~g~ 374 (498)
+||+++.+.+.-. .....+.+.|+..|+++.+.- . .++.... .. .+ . .... ..++|.++.-||=|.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~--~--~~~~~~~--~~-~~---~-~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDS--E--TYEHLPE--FS-EE---D-VLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec--c--hhhhcCc--cc-cc---c-cccccccCCCEEEEEeCcHH
Confidence 4789987655211 123456777888887765420 0 0111100 00 00 0 0011 136899999998553
Q ss_pred CCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 375 RGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 375 ~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
...+++ +...++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 445666 666789999998876
No 257
>PRK15453 phosphoribulokinase; Provisional
Probab=50.60 E-value=21 Score=37.12 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=38.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTM 50 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtm 50 (498)
..|-|||| ||-||=.++.++..+|+..|.++.++..|-|=-.|-..|
T Consensus 6 piI~ItG~--SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~ 52 (290)
T PRK15453 6 PIIAVTGS--SGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEM 52 (290)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhH
Confidence 36889997 899999999999999998888888888887766555544
No 258
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=50.34 E-value=26 Score=33.13 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=31.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
.|++|| .||-||=..|..|-.-|+++|.+|..+--|
T Consensus 4 vIwltG--lsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 4 VIWLTG--LSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp EEEEES--STTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 578888 799999999999999999999998887655
No 259
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.30 E-value=25 Score=38.45 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=27.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|.|-||| +=||..|++=|..+|+..|+++.+
T Consensus 122 ~~I~VTG----TnGKTTTt~ml~~iL~~~g~~~~~ 152 (498)
T PRK02006 122 KVLAITG----TNGKTTTTALTGLLCERAGKKVAV 152 (498)
T ss_pred CEEEEEC----CCcHHHHHHHHHHHHHHcCCCEEE
Confidence 5688888 479999999999999999999887
No 260
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=49.36 E-value=21 Score=37.56 Aligned_cols=94 Identities=29% Similarity=0.519 Sum_probs=68.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCccccccCCCCC
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLT 83 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~~~~l~ 83 (498)
|=+|| +-|.||-....-+|+.|..+|++|.++-+||= |||-=|-+ ||+==|+-.....
T Consensus 54 iGITG--~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS--------Sp~TGGsi------------LGDRiRM~~~~~~ 111 (323)
T COG1703 54 IGITG--VPGAGKSTLIEALGRELRERGHRVAVLAVDPS--------SPFTGGSI------------LGDRIRMQRLAVD 111 (323)
T ss_pred EEecC--CCCCchHHHHHHHHHHHHHCCcEEEEEEECCC--------CCCCCccc------------cccHhhHHhhccC
Confidence 33555 46889999999999999999999999999994 78877765 7887777665533
Q ss_pred CC----CcccchHhhHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEee
Q 010866 84 RD----NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIEL 147 (498)
Q Consensus 84 ~~----~n~t~G~iy~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~Ei 147 (498)
.+ +..|.| +|| -++.+..+.|.-+- ..++|++|||-
T Consensus 112 ~~vFiRs~~srG--------------~lG-------GlS~at~~~i~~ld-------AaG~DvIIVET 151 (323)
T COG1703 112 PGVFIRSSPSRG--------------TLG-------GLSRATREAIKLLD-------AAGYDVIIVET 151 (323)
T ss_pred CCeEEeecCCCc--------------cch-------hhhHHHHHHHHHHH-------hcCCCEEEEEe
Confidence 22 223322 444 35666666666653 46899999993
No 261
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.31 E-value=32 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCCEEEEcCCCCCCCchhHHHHHHHHHH--cCCCEEeehHHH
Q 010866 362 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 401 (498)
Q Consensus 362 ~~DGIilpGG~g~~~~~g~i~~i~~a~e--~~iPiLGIClGm 401 (498)
++|.++.-||=|. .+.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT-----LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH-----HHHHHHHhcccCCCCeEEEEeCCC
Confidence 4689999998552 5567776665 689999998875
No 262
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=49.26 E-value=65 Score=31.69 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=48.2
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCch
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~ 378 (498)
+|.+|+ - -..+...|.++-+..|+..... +|++- .++.-. ......+|.|++.+ + .
T Consensus 63 ~ILfVg-t--k~~~~~~V~~~A~~~g~~~v~~---RWlgG-tLTN~~-----------~~~~~~Pdlliv~d-p-----~ 118 (196)
T TIGR01012 63 DILVVS-A--RIYGQKPVLKFAKVTGARAIAG---RFTPG-TFTNPM-----------QKAFREPEVVVVTD-P-----R 118 (196)
T ss_pred eEEEEe-c--CHHHHHHHHHHHHHhCCceECC---eeCCC-CCCCcc-----------ccccCCCCEEEEEC-C-----c
Confidence 688887 1 2224455666666666655433 78753 333210 02245689998864 2 2
Q ss_pred hHHHHHHHHHHcCCCEEeeh
Q 010866 379 GKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIC 398 (498)
....++++|...++|+.|||
T Consensus 119 ~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 119 ADHQALKEASEVGIPIVALC 138 (196)
T ss_pred cccHHHHHHHHcCCCEEEEe
Confidence 34678999999999999999
No 263
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=49.16 E-value=18 Score=38.82 Aligned_cols=34 Identities=29% Similarity=0.241 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeee-cccccCC
Q 010866 13 GLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNTD 46 (498)
Q Consensus 13 ~lGkGi~~as~g~ll~~~g~~v~~~K~-DpYlNvd 46 (498)
|.||=.+++.++..|..+|+||-+|-+ ||=-|.-
T Consensus 117 GVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt 151 (387)
T PHA02519 117 GVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTAS 151 (387)
T ss_pred CCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcc
Confidence 569999999999999999999999996 9966643
No 264
>PRK06953 short chain dehydrogenase; Provisional
Probab=49.13 E-value=23 Score=33.58 Aligned_cols=34 Identities=35% Similarity=0.525 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
||.++||||. ++||.-++ +.|.++|++|.++-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la-----~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFV-----RQYRADGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHH-----HHHHhCCCEEEEEECC
Confidence 7889999996 88886654 4455789999887443
No 265
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=49.08 E-value=37 Score=30.53 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=33.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|-++++ =+|-||=.+++.++..|..+|.+|-++-.||+
T Consensus 2 i~~~~~-kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~ 39 (139)
T cd02038 2 IAVTSG-KGGVGKTNISANLALALAKLGKRVLLLDADLG 39 (139)
T ss_pred EEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 345555 78999999999999999999999999999984
No 266
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=48.98 E-value=31 Score=31.53 Aligned_cols=37 Identities=32% Similarity=0.284 Sum_probs=29.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
+-|.|+|. |+-||=..+..|-..|+++|++|..+|=+
T Consensus 1 pvv~VvG~--~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGP--KNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 34778885 89999999999999999999999988754
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=48.81 E-value=29 Score=37.47 Aligned_cols=39 Identities=26% Similarity=0.508 Sum_probs=33.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHH----CCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA----CGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~----~g~~v~~~K~DpY 42 (498)
+.|++.|-. |.||=.|++.++..|+. +|.+|.++-+|+|
T Consensus 175 ~vi~lvGpt--GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 175 RVFILVGPT--GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred eEEEEECCC--CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356667765 99999999999998874 5899999999988
No 268
>PRK05693 short chain dehydrogenase; Provisional
Probab=48.47 E-value=20 Score=35.20 Aligned_cols=32 Identities=38% Similarity=0.557 Sum_probs=24.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
||-++|||| -||+|+.++ +.|..+|++|.+.-
T Consensus 1 mk~vlItGa-sggiG~~la-----~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALA-----DAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHH-----HHHHHCCCEEEEEe
Confidence 788999998 478887554 55667899887653
No 269
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=48.23 E-value=17 Score=37.18 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=27.7
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 13 GLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 13 ~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|+||-.|++-+..-|...|.||-.+=+||=
T Consensus 11 GIGKSTts~N~aAAla~~GkkVl~vGCDPK 40 (278)
T COG1348 11 GIGKSTTSQNLAAALAELGKKVLIVGCDPK 40 (278)
T ss_pred CcCcchhHHHHHHHHHHcCCeEEEEcCCCC
Confidence 789999999999999999999999999994
No 270
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.11 E-value=39 Score=34.17 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=43.1
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
++++++. ..+....+..+.+.|...|..+. |..... ....++|.++.-||=|.
T Consensus 1 m~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFY-REEKEKEAKFLKEKISKEHEVVE------FCEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEe-CccHHHHHHHHHHHHHHcCCeeE------eecccc-----------------cccCCCCEEEEECCcHH---
Confidence 4677774 22233355667777777775433 211110 12347899999998552
Q ss_pred hhHHHHHHHHHHcCCCEEeehHHH
Q 010866 378 QGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
.+.+++.+ ++|++||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 34444444 89999998775
No 271
>PRK07102 short chain dehydrogenase; Provisional
Probab=47.97 E-value=20 Score=34.40 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=25.4
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
||-++||||- ++||+.++- .|-++|++|.+.=.++
T Consensus 1 ~~~vlItGas-~giG~~~a~-----~l~~~G~~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGAT-SDIARACAR-----RYAAAGARLYLAARDV 35 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHH-----HHHhcCCEEEEEeCCH
Confidence 6889999986 778766554 4556799888775443
No 272
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=47.95 E-value=17 Score=35.72 Aligned_cols=29 Identities=45% Similarity=0.786 Sum_probs=21.9
Q ss_pred ccCCcchHHHHHHHHHHHHHC--CCeeEEee
Q 010866 10 VVSGLGKGVTASSIGVLLKAC--GLRVTCIK 38 (498)
Q Consensus 10 v~S~lGkGi~~as~g~ll~~~--g~~v~~~K 38 (498)
|..|=|||-|+|.+|..|++. |++|-++.
T Consensus 33 V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ 63 (198)
T COG2109 33 VFTGNGKGKTTAALGLALRALGHGLRVGVVQ 63 (198)
T ss_pred EEecCCCChhHHHHHHHHHHhcCCCEEEEEE
Confidence 345679999999999999985 56665544
No 273
>PF02424 ApbE: ApbE family; InterPro: IPR003374 This prokaryotic family of lipoproteins are related to ApbE, from Salmonella typhimurium. ApbE is involved in thiamine synthesis []. More specifically is may be involved in the conversion of aminoimidazole ribotide (AIR) to 4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP) during the biosynthesis of the pyrimidine moiety of thiamine.; PDB: 2O34_B 2O18_C 1VRM_A 3PND_D.
Probab=47.77 E-value=15 Score=36.98 Aligned_cols=90 Identities=26% Similarity=0.421 Sum_probs=49.7
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeec--ccccCCC--------CCCCc---cccceEEEccCCccccCCCCccccc
Q 010866 11 VSGLGKGVTASSIGVLLKACGLRVTCIKID--PYLNTDA--------GTMSP---FEHGEVFVLDDGGEVDLDLGNYERF 77 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~g~~v~~~K~D--pYlNvd~--------gtmsP---~~HgEvfV~~dG~E~DlDlG~YeRf 77 (498)
+.|++||-++--+..+|++.|.+=.++-+= =+..=.+ |--+| -+.-.++-..|++=+= =|+||||
T Consensus 110 lggiaKGyavD~~~~~L~~~gi~~~lVn~GGdi~~~G~~~~g~~W~IgI~~P~~~~~~~~~~~l~~~avaT--Sg~y~r~ 187 (254)
T PF02424_consen 110 LGGIAKGYAVDRAAELLREAGITNALVNAGGDIRAIGSKPDGQPWRIGIEDPRDPGRILGVLELSNGAVAT--SGDYERY 187 (254)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTTSCEEEEETTEEEEESBCTTSSBEEEEEEETCTTCCEEEEEECCTSEEEE--EETTCCC
T ss_pred cchhHHHHHHHHHHHHHHHcCCCeEEEeCCCcEEEeccCCCCCeEEEEecccCCCCceeEEEEeCCcEEEe--ccCceee
Confidence 468999999999999999998754433221 0000000 11122 2222234444442110 2899999
Q ss_pred cCCCCCCCCcccchHhhHHHHhhhhcCCCC-CCeeE
Q 010866 78 MDIKLTRDNNITTGKIYQSVIDKERKGDYL-GKTVQ 112 (498)
Q Consensus 78 ~~~~l~~~~n~t~G~iy~~vi~kER~g~yl-G~tvQ 112 (498)
...+ |+.|+.+|+. |.|.-. ....|
T Consensus 188 ~~~~---------g~~~~HIidP-~tG~p~~~~~~s 213 (254)
T PF02424_consen 188 FEID---------GKRYHHIIDP-RTGYPAESGIAS 213 (254)
T ss_dssp CCCT---------SCECES-BET-TTSSB-SSSEEE
T ss_pred EEEC---------CEEeeeeECC-CCCcCccCCcEE
Confidence 9654 7788888876 555544 44444
No 274
>PLN02727 NAD kinase
Probab=47.58 E-value=35 Score=40.81 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=51.2
Q ss_pred eEEEEEcccCCc-cchHHHHHHHHHHc-CCcceeeeEEEEecCCCccc-cccCCChhhhHHHHHhc-cCCCEEEEcCCCC
Q 010866 298 VRIAMVGKYTGL-SDAYLSILKALLHA-SVDLRKKLVIDWIPACDLED-ATEKENPDAYKAAWKLL-KGADGILVPGGFG 373 (498)
Q Consensus 298 v~IaIVgkY~~l-~day~SI~~AL~~a-G~~~~v~v~i~~I~se~l~~-~~~~~~p~~y~~~~~~l-~~~DGIilpGG~g 373 (498)
-+|+||.|...- .+....+.+.|.+. |+.+.+.-+ .++.+.. .........|...++.+ ..+|.||.-||=|
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~----~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDG 754 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPD----VHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDG 754 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecc----hHHHhhccccccccceecccchhhcccCCCEEEEECCcH
Confidence 389999988641 11234467777776 655543211 0110100 00000000000111222 3689999999855
Q ss_pred CCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 374 NRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 374 ~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
. .+.+++.+...++|+|||=+|.
T Consensus 755 T-----lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 755 V-----ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred H-----HHHHHHHhcCCCCCEEEEeCCC
Confidence 3 5667777777889999999884
No 275
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=46.83 E-value=33 Score=34.20 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|-|.||++ -.|.||-.+|..++..|...|.+|-+|-.|+-
T Consensus 104 ~vi~vts~-~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 104 KALAVVSA-KSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 55666654 58999999999999999999999999999864
No 276
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=46.62 E-value=82 Score=34.77 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=23.2
Q ss_pred eEEEEEcccCCccchHHHHHHHHHHcCCcceee
Q 010866 298 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKK 330 (498)
Q Consensus 298 v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~ 330 (498)
.||+++| .+..+ .++.+.|...|+.+.+.
T Consensus 8 ~kv~V~G-LG~sG---~a~a~~L~~~G~~v~v~ 36 (448)
T COG0771 8 KKVLVLG-LGKSG---LAAARFLLKLGAEVTVS 36 (448)
T ss_pred CEEEEEe-ccccc---HHHHHHHHHCCCeEEEE
Confidence 5899998 66444 89999999999877664
No 277
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=46.06 E-value=1.3e+02 Score=33.21 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=90.6
Q ss_pred CCcccEEEEecCCCCCcchhccc-CccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHH
Q 010866 208 GLTPNILACRSTVALDDNVKGKL-SQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTS 286 (498)
Q Consensus 208 GI~pd~lV~Rs~~~l~s~~r~Ki-sLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~ 286 (498)
|.....-++|-+.-+.. .. --||-+.-++=.|+ .+++ .|...+.+--.|+...++..+.. .+....|.+
T Consensus 101 gy~~~lp~aR~Dvf~~~----~~~~kF~E~N~Dgssgm--~~~~-~l~~~~~~~~~~~~f~~~~~v~~---~~~~~~~vd 170 (445)
T PF14403_consen 101 GYDSPLPIARLDVFLTE----DGSFKFCEFNADGSSGM--NEDD-ELARIFLELPAMQEFAERYRVEP---LPLFQSWVD 170 (445)
T ss_pred CCCCcCcceeeeEEEcC----CCceEEEEecCCCcccc--chhH-HHHHHHHhhHHHHHHHhhcCccC---cchHHHHHH
Confidence 33334445554443332 23 33455545555555 6677 88888888888888888877763 233445532
Q ss_pred ----HHhhhcCCCCCeEEEEEcccCCcc--chHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc
Q 010866 287 ----RAEICDGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (498)
Q Consensus 287 ----lv~~v~~~~~~v~IaIVgkY~~l~--day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l 360 (498)
.........++++||||| |.+.+ +-..-..+.|...|+++.+- ++ ..|
T Consensus 171 ~~l~~y~~~~~~~~~P~IAIvD-f~~~~~~~Ef~~f~~~f~~~G~~~vI~------d~-------------------~~L 224 (445)
T PF14403_consen 171 ALLDIYRTFGGRVEKPNIAIVD-FLEYPTLSEFEVFQRLFEEHGYDCVIC------DP-------------------RDL 224 (445)
T ss_pred HHHHHHHHhcCcCCCCcEEEEe-cccCCccchHHHHHHHHHHcCCceEec------Ch-------------------HHc
Confidence 222223334568999997 76443 12345678888999998875 33 344
Q ss_pred cCCCEEEEcCCCCC----C-C--------chhHHHHHHHHHHcCCCEEeehHH
Q 010866 361 KGADGILVPGGFGN----R-G--------VQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 361 ~~~DGIilpGG~g~----~-~--------~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
.--||.+..||+-- | - ..+.-..++..+...++++|==.+
T Consensus 225 ~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~~av~~vgsfrs 277 (445)
T PF14403_consen 225 EYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRDGAVCMVGSFRS 277 (445)
T ss_pred eecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhcCCeEEecchhh
Confidence 44577777777532 1 0 112333445555667777775433
No 278
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=45.70 E-value=57 Score=35.27 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=21.6
Q ss_pred eEEEEEcccCCccchHHH-HHHHHHHcCCcceee
Q 010866 298 VRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKK 330 (498)
Q Consensus 298 v~IaIVgkY~~l~day~S-I~~AL~~aG~~~~v~ 330 (498)
.+|.++| .+..+ .| +.+.|...|+.+.+.
T Consensus 8 ~~v~viG-~G~sG---~s~~a~~L~~~G~~V~~~ 37 (461)
T PRK00421 8 KRIHFVG-IGGIG---MSGLAEVLLNLGYKVSGS 37 (461)
T ss_pred CEEEEEE-Echhh---HHHHHHHHHhCCCeEEEE
Confidence 3788888 55333 67 799999999987664
No 279
>PRK07890 short chain dehydrogenase; Provisional
Probab=45.69 E-value=26 Score=33.76 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=24.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|.|||||| -++||+ ++.+.|-++|++|.+.-.
T Consensus 6 k~vlItGa-~~~IG~-----~la~~l~~~G~~V~~~~r 37 (258)
T PRK07890 6 KVVVVSGV-GPGLGR-----TLAVRAARAGADVVLAAR 37 (258)
T ss_pred CEEEEECC-CCcHHH-----HHHHHHHHcCCEEEEEeC
Confidence 78999998 567775 455667789998887743
No 280
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=45.51 E-value=41 Score=34.54 Aligned_cols=42 Identities=26% Similarity=0.377 Sum_probs=36.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
|-|-|+| .--|.||=.+|+.|+..|..+|++|-++-+||.-+
T Consensus 94 ~vIav~~-~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 94 VVVAVIG-GRGGAGASTLAAALALAAARHGLRTLLVDADPWGG 135 (322)
T ss_pred eEEEEEc-CCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 4566665 45789999999999999999999999999999865
No 281
>PRK06940 short chain dehydrogenase; Provisional
Probab=45.08 E-value=30 Score=34.34 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.++|||+ ||||+.++- .|. +|++|.+.=.+
T Consensus 3 k~~lItGa--~gIG~~la~-----~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIAR-----RVG-AGKKVLLADYN 33 (275)
T ss_pred CEEEEECC--ChHHHHHHH-----HHh-CCCEEEEEeCC
Confidence 78899997 899987754 343 69999886443
No 282
>PRK06101 short chain dehydrogenase; Provisional
Probab=44.43 E-value=25 Score=33.80 Aligned_cols=33 Identities=33% Similarity=0.463 Sum_probs=25.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
||-++||||. +|||+.+ .+.|.++|++|.+.=-
T Consensus 1 ~~~vlItGas-~giG~~l-----a~~L~~~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQL-----ALDYAKQGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHH-----HHHHHhCCCEEEEEEC
Confidence 5789999995 8888655 4566778999987633
No 283
>PRK06924 short chain dehydrogenase; Provisional
Probab=44.16 E-value=36 Score=32.68 Aligned_cols=31 Identities=39% Similarity=0.666 Sum_probs=23.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
||.|+||||- ++||+.+ .+-|-++|++|.+.
T Consensus 1 ~k~vlItGas-ggiG~~i-----a~~l~~~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAI-----ANQLLEKGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHH-----HHHHHhcCCEEEEE
Confidence 7899999975 6777655 45566789988775
No 284
>PRK05854 short chain dehydrogenase; Provisional
Probab=43.90 E-value=24 Score=35.95 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- ||||+.++ +.|..+|++|.+.
T Consensus 15 k~~lITGas-~GIG~~~a-----~~La~~G~~Vil~ 44 (313)
T PRK05854 15 KRAVVTGAS-DGLGLGLA-----RRLAAAGAEVILP 44 (313)
T ss_pred CEEEEeCCC-ChHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 89998654 4566789988765
No 285
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=43.86 E-value=34 Score=35.12 Aligned_cols=40 Identities=28% Similarity=0.438 Sum_probs=29.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+|+|.|.==-|.||=.+|.-|+.-|...|+||-++-+|.|
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3555555556889999999999999999999999999986
No 286
>PRK05439 pantothenate kinase; Provisional
Probab=43.67 E-value=38 Score=35.46 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=35.8
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeecccccCC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPYLNTD 46 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~--g~~v~~~K~DpYlNvd 46 (498)
.|.|+|++ |-||=.+|..|-.+|+.. |.+|.++-+|-|+.-+
T Consensus 88 iIgIaG~~--gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~ 131 (311)
T PRK05439 88 IIGIAGSV--AVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN 131 (311)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH
Confidence 58899984 678999999999999874 7899999999998643
No 287
>PRK07933 thymidylate kinase; Validated
Probab=43.21 E-value=45 Score=32.53 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=32.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
+||.+-| +.|-||-.-+..|...|+++|++|...+.-
T Consensus 1 ~~IviEG--~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEG--VDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4788887 578899999999999999999999999874
No 288
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=43.12 E-value=39 Score=33.22 Aligned_cols=33 Identities=33% Similarity=0.418 Sum_probs=28.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
-|..|| +||-||-..|..+-..|.++|++|-.+
T Consensus 25 viW~TG--LSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 25 VIWFTG--LSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred EEEeec--CCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 567788 899999999999999999999976443
No 289
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.09 E-value=47 Score=34.40 Aligned_cols=89 Identities=22% Similarity=0.232 Sum_probs=48.1
Q ss_pred EEEEEcccCCc--cchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCC
Q 010866 299 RIAMVGKYTGL--SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 376 (498)
Q Consensus 299 ~IaIVgkY~~l--~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~ 376 (498)
+|+++.+...- .++...+.+.|+..++++.+. ....+.+...... +.........+|-++.-||=|.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~----~~~~~~~~~~~~~-----~~~~~~~~~~~d~vi~~GGDGt-- 74 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD----EETAEVLPGHGLQ-----TVSRKLLGEVCDLVIVVGGDGS-- 74 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe----cchhhhcCccccc-----ccchhhcccCCCEEEEEeCcHH--
Confidence 69998654421 123456667777777765542 1011111100000 0000012235899999998542
Q ss_pred chhHHHHHHHHHHcCCCEEeehHHH
Q 010866 377 VQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 377 ~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
...+++.+...++|+|||=.|.
T Consensus 75 ---~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 75 ---LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred ---HHHHHHHhcCCCCCEEEEeCCc
Confidence 4456666666789999998875
No 290
>PRK08177 short chain dehydrogenase; Provisional
Probab=43.05 E-value=38 Score=32.21 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=25.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
||-++||||. ++||+. +.+.|.++|++|..+-.+
T Consensus 1 ~k~vlItG~s-g~iG~~-----la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGAS-RGLGLG-----LVDRLLERGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCCC-chHHHH-----HHHHHHhCCCEEEEEeCC
Confidence 6889999994 566654 566777889999876544
No 291
>PRK06851 hypothetical protein; Provisional
Probab=42.99 E-value=40 Score=36.14 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=33.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee--ecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK--IDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K--~Dp 41 (498)
|.+++||| +|.||-.....|+..|..+|+.|.... .||
T Consensus 31 ~~~il~G~--pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 31 RIFILKGG--PGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 67899998 799999999999999999999999874 455
No 292
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=42.97 E-value=30 Score=33.17 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=22.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
||-|+||||. +|||+.+ .+.|-++|++|.+
T Consensus 2 ~k~ilItGas-~giG~~l-----a~~l~~~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRAT-----AVLAAARGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEE
Confidence 5789999985 7888764 4556677887643
No 293
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=42.86 E-value=32 Score=36.36 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=36.8
Q ss_pred ccCCCEEEEcCCCCCCC---chhHHHHHHHHHHcCCCEEeehHHHHHHH
Q 010866 360 LKGADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAV 405 (498)
Q Consensus 360 l~~~DGIilpGG~g~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~ 405 (498)
...+|-+++.+|.+... ......+++.+...+.++-|||-|-=+|+
T Consensus 74 ~~~~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA 122 (328)
T COG4977 74 APPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122 (328)
T ss_pred cCcceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHH
Confidence 34578888878777542 24578899999999999999999998877
No 294
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=42.78 E-value=67 Score=30.55 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=42.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc-ccCCCCCCCccccce
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY-LNTDAGTMSPFEHGE 57 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY-lNvd~gtmsP~~HgE 57 (498)
||.+=|+| .|+-||=.....|-+.|+.+||+|..+|-++= ..+|.--=..|.|.+
T Consensus 2 ~~Il~ivG--~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~ 57 (161)
T COG1763 2 MKILGIVG--YKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRK 57 (161)
T ss_pred CcEEEEEe--cCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhc
Confidence 35555666 57788999999999999999999999998765 366666566666554
No 295
>PRK04296 thymidine kinase; Provisional
Probab=42.74 E-value=58 Score=31.03 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=27.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHH--HCCCeeEEeeecccccC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLK--ACGLRVTCIKIDPYLNT 45 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~--~~g~~v~~~K~DpYlNv 45 (498)
+.+++||. .|+|.|++.++.+.. .+|.+|-++| |.+..
T Consensus 3 ~i~litG~----~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~ 42 (190)
T PRK04296 3 KLEFIYGA----MNSGKSTELLQRAYNYEERGMKVLVFK--PAIDD 42 (190)
T ss_pred EEEEEECC----CCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccc
Confidence 46778876 488899999888855 4799998884 54443
No 296
>PRK03846 adenylylsulfate kinase; Provisional
Probab=42.22 E-value=41 Score=31.99 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=31.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
+.|.+||. ||-||=..+..|..+|..+|+.+-.+--|++-
T Consensus 25 ~~i~i~G~--~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 25 VVLWFTGL--SGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred EEEEEECC--CCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 57888886 79999999999999998888877666555543
No 297
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=42.03 E-value=1.1e+02 Score=31.23 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=47.9
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCch
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~ 378 (498)
+|.+|+ -. ......|.++-.+.|...... +|++- .++... -.....+|.||+.+ | .
T Consensus 73 ~Il~Vs-tr--~~~~~~V~k~A~~tg~~~i~~---Rw~pG-tlTN~~-----------~~~f~~P~llIV~D-p-----~ 128 (249)
T PTZ00254 73 DVVVVS-SR--PYGQRAVLKFAQYTGASAIAG---RFTPG-TFTNQI-----------QKKFMEPRLLIVTD-P-----R 128 (249)
T ss_pred cEEEEE-cC--HHHHHHHHHHHHHhCCeEECC---cccCC-CCCCcc-----------ccccCCCCEEEEeC-C-----C
Confidence 466775 21 224456777766777665433 68653 332210 02346789999876 2 2
Q ss_pred hHHHHHHHHHHcCCCEEeeh
Q 010866 379 GKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIC 398 (498)
....++++|...++|+.|||
T Consensus 129 ~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALC 148 (249)
T ss_pred cchHHHHHHHHhCCCEEEEe
Confidence 24578999999999999999
No 298
>PRK12742 oxidoreductase; Provisional
Probab=41.94 E-value=30 Score=32.76 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=22.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|.|+|||| -+|||+-+ .+.|.++|++|.+
T Consensus 7 k~vlItGa-sggIG~~~-----a~~l~~~G~~v~~ 35 (237)
T PRK12742 7 KKVLVLGG-SRGIGAAI-----VRRFVTDGANVRF 35 (237)
T ss_pred CEEEEECC-CChHHHHH-----HHHHHHCCCEEEE
Confidence 78999998 67888764 4677788988764
No 299
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=41.86 E-value=16 Score=38.91 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=36.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc--CCCCCCCc
Q 010866 10 VVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN--TDAGTMSP 52 (498)
Q Consensus 10 v~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN--vd~gtmsP 52 (498)
+|.|.|-|=|.+++||-||+++..+.++=.||+-. .|++.-+|
T Consensus 216 ~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~ 260 (362)
T KOG1252|consen 216 FVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGP 260 (362)
T ss_pred EEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCC
Confidence 45678888888899999999999999999999854 46666666
No 300
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=41.75 E-value=3.4e+02 Score=26.36 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=30.1
Q ss_pred EEEEEeCCccCC-cchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 2 KYVLVTGGVVSG-LGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 2 k~i~vtGgv~S~-lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
|.+|||...... -|=+..+..+..-|+++|++|+++=.++..
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 456777655432 355667788999999999999998665543
No 301
>PRK06398 aldose dehydrogenase; Validated
Probab=41.31 E-value=29 Score=33.92 Aligned_cols=30 Identities=43% Similarity=0.553 Sum_probs=23.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -+|||+-+ .+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~i-----a~~l~~~G~~Vi~~ 36 (258)
T PRK06398 7 KVAIVTGG-SQGIGKAV-----VNRLKEEGSNVINF 36 (258)
T ss_pred CEEEEECC-CchHHHHH-----HHHHHHCCCeEEEE
Confidence 78999998 47888764 46777899998865
No 302
>PRK08727 hypothetical protein; Validated
Probab=41.03 E-value=20 Score=35.38 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=43.6
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDD 63 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~d 63 (498)
.++++|+ ||.||==.+.+++.-+...|++|..+-++-+.+.=+..++-++.=.+.|.||
T Consensus 43 ~l~l~G~--~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDD 101 (233)
T PRK08727 43 WLYLSGP--AGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDG 101 (233)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeC
Confidence 5899998 8999998899999999999999988776544332223334444456888886
No 303
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=40.88 E-value=2.1e+02 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=20.7
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++|||++.++. + ......++++.+.++|+..+
T Consensus 54 ~~vdgii~~~~~--~--~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHGR--A--EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecCC--h--hhhHHHHHHHHHcCCCEEEe
Confidence 479999997532 1 11234466677788887654
No 304
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=40.84 E-value=2.7e+02 Score=26.18 Aligned_cols=68 Identities=18% Similarity=0.133 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHh---ccCCCEEEEcCCCCCCCchhHHHHHHHHHH
Q 010866 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL---LKGADGILVPGGFGNRGVQGKILAAKYARE 389 (498)
Q Consensus 313 y~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~---l~~~DGIilpGG~g~~~~~g~i~~i~~a~e 389 (498)
-..+...|+..|+++... ..+ +++.+ .-.++.+. ..++|-||.+||-|........++++.+.+
T Consensus 24 ~~~l~~~L~~~G~~v~~~---~iv-~Dd~~---------~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~ 90 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADR---AIV-KDDIY---------QIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFD 90 (163)
T ss_pred HHHHHHHHHHCCCeEEEE---EEc-CCCHH---------HHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHC
Confidence 345677788899875432 122 22221 11112122 246999999998765433344556666665
Q ss_pred cCCC
Q 010866 390 HRIP 393 (498)
Q Consensus 390 ~~iP 393 (498)
..+|
T Consensus 91 ~~l~ 94 (163)
T TIGR02667 91 KTVE 94 (163)
T ss_pred CcCC
Confidence 5544
No 305
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=40.72 E-value=60 Score=29.97 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcccCCCCCCCccEEEEeeCcc--ccccCcchHHHHHHHhhhhcCC--CCEEEEEEeeee
Q 010866 119 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 184 (498)
Q Consensus 119 ~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGT--vGdiEs~pf~ea~rq~~~~~g~--~n~~~ih~t~vp 184 (498)
.++.+++..+. ..+||+|+|.+|+- .......-|.+.+++|-..+.. .++-.+=+++.|
T Consensus 54 ~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 54 ADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 45556666632 46899999999984 1111223466777777666543 344444344433
No 306
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.63 E-value=90 Score=33.83 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=22.0
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceee
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKK 330 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~ 330 (498)
+|+++| ++..+ .++.+.|...|+.+.+.
T Consensus 16 ~i~v~G-~G~sG---~a~a~~L~~~G~~V~~~ 43 (458)
T PRK01710 16 KVAVVG-IGVSN---IPLIKFLVKLGAKVTAF 43 (458)
T ss_pred eEEEEc-ccHHH---HHHHHHHHHCCCEEEEE
Confidence 799998 77544 58889999999876654
No 307
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.60 E-value=33 Score=33.20 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=25.7
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv-~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|-|+||||. .||||+. +.+.|..+|++|.+.=-
T Consensus 6 k~vlItGas~~~giG~~-----la~~l~~~G~~vi~~~r 39 (256)
T PRK12748 6 KIALVTGASRLNGIGAA-----VCRRLAAKGIDIFFTYW 39 (256)
T ss_pred cEEEEeCCCCCCCHHHH-----HHHHHHHcCCcEEEEcC
Confidence 689999998 5889876 55667778998877633
No 308
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=40.51 E-value=45 Score=31.43 Aligned_cols=38 Identities=34% Similarity=0.441 Sum_probs=32.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
.|.++|+ ||-||=..+..|..+| .+.+|.++-.|.|..
T Consensus 1 iigi~G~--~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGG--SGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECC--CCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 3788998 8999999999999988 567899999998764
No 309
>PRK08303 short chain dehydrogenase; Provisional
Probab=40.32 E-value=29 Score=35.39 Aligned_cols=30 Identities=40% Similarity=0.607 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- ||||+.++ +.|.+.|++|.+.
T Consensus 9 k~~lITGgs-~GIG~aia-----~~la~~G~~Vv~~ 38 (305)
T PRK08303 9 KVALVAGAT-RGAGRGIA-----VELGAAGATVYVT 38 (305)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEE
Confidence 789999986 78887654 5566789998765
No 310
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=40.23 E-value=34 Score=36.34 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcC
Q 010866 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHR 391 (498)
Q Consensus 312 ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~ 391 (498)
+.+.+.+.|..+|++..+. ..+++. ..+..+|.||=.||-|.- +.+.-..+...
T Consensus 76 ~~~~~~~~l~k~giesklv------~R~~ls---------------q~i~waD~VisvGGDGTf-----L~Aasrv~~~~ 129 (395)
T KOG4180|consen 76 AIKFCQEELSKAGIESKLV------SRNDLS---------------QPIRWADMVISVGGDGTF-----LLAASRVIDDS 129 (395)
T ss_pred HHHHHHHHHhhCCcceeee------ehhhcc---------------CcCchhhEEEEecCccce-----eehhhhhhccC
Confidence 5567889999999986543 333332 237789999999987752 22333466789
Q ss_pred CCEEee
Q 010866 392 IPYLGI 397 (498)
Q Consensus 392 iPiLGI 397 (498)
+|++||
T Consensus 130 ~PViGv 135 (395)
T KOG4180|consen 130 KPVIGV 135 (395)
T ss_pred Cceeee
Confidence 999998
No 311
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.12 E-value=30 Score=33.66 Aligned_cols=30 Identities=30% Similarity=0.597 Sum_probs=22.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -||||+.++ +.|-++|++|.+.
T Consensus 9 k~~lItGa-s~gIG~aia-----~~l~~~G~~vv~~ 38 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMA-----IGLAKAGADIVGV 38 (251)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHCCCEEEEe
Confidence 78999998 477777554 5666789988753
No 312
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=39.88 E-value=30 Score=34.74 Aligned_cols=45 Identities=31% Similarity=0.586 Sum_probs=34.8
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHHHHHHHHHhcchh
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 412 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClGmQll~va~g~~v 412 (498)
..+|+++++= |+||++ .++|+.. .+|+.|||----+.+...|+++
T Consensus 68 ~GvdaiiIaC-f~DPgl----~~~Re~~--~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGL----AAARERA--AIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHH----HHHHHHh--CCCceehhHHHHHHHHHhcceE
Confidence 3689999985 777654 4444443 6999999999999998888875
No 313
>PLN02422 dephospho-CoA kinase
Probab=39.79 E-value=37 Score=34.05 Aligned_cols=28 Identities=43% Similarity=0.751 Sum_probs=22.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
||.|+||||.-| ||. +++..|+..|+.|
T Consensus 1 M~~igltG~igs--GKs----tv~~~l~~~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIAS--GKS----TVSNLFKSSGIPV 28 (232)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHCCCeE
Confidence 789999999766 564 6667888889876
No 314
>PRK12828 short chain dehydrogenase; Provisional
Probab=39.71 E-value=38 Score=31.81 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=26.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|.|+||||- +++| .++.+.|.++|++|.++--||
T Consensus 8 k~vlItGat-g~iG-----~~la~~l~~~G~~v~~~~r~~ 41 (239)
T PRK12828 8 KVVAITGGF-GGLG-----RATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CEEEEECCC-CcHh-----HHHHHHHHHCCCeEEEEeCCh
Confidence 679999986 6666 566677888899988776654
No 315
>PRK07035 short chain dehydrogenase; Provisional
Probab=39.41 E-value=33 Score=32.99 Aligned_cols=30 Identities=40% Similarity=0.562 Sum_probs=23.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++||||- |+|| +++.+.|.++|++|.++
T Consensus 9 k~vlItGas-~gIG-----~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 9 KIALVTGAS-RGIG-----EAIAKLLAQQGAHVIVS 38 (252)
T ss_pred CEEEEECCC-cHHH-----HHHHHHHHHCCCEEEEE
Confidence 679999986 6666 46667778889988766
No 316
>PRK14528 adenylate kinase; Provisional
Probab=39.41 E-value=36 Score=32.24 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=20.8
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll 27 (498)
||-|+|+|+ +|-||+..|.-|+.-+
T Consensus 1 ~~~i~i~G~--pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 1 MKNIIFMGP--PGAGKGTQAKILCERL 25 (186)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 688999998 8999999888776543
No 317
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=39.26 E-value=35 Score=36.61 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=23.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
|+.|.+|||.-| || |+++++|+..|+.|
T Consensus 1 m~~IgltG~igs--GK----Stv~~~L~~~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGA--GK----STVAARLAELGAVV 28 (395)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 788999999876 45 57888999888865
No 318
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=39.26 E-value=81 Score=29.24 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 13 GLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 13 ~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+=||..|++=|..+|+..|+.|...-
T Consensus 4 T~GKTTTt~ml~~iL~~~g~~~~~~~ 29 (188)
T PF08245_consen 4 TNGKTTTTRMLAHILSAAGKVVGTIG 29 (188)
T ss_dssp SSSHHHHHHHHHHHHHHTTEEEEEES
T ss_pred CCCHHHHHHHHHHHHHhcCCcccccc
Confidence 56999999999999999999888876
No 319
>PRK12829 short chain dehydrogenase; Provisional
Probab=39.15 E-value=37 Score=32.71 Aligned_cols=33 Identities=39% Similarity=0.622 Sum_probs=25.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.++||||- +++| +++.+.|.++|++|.++-.|
T Consensus 12 ~~vlItGa~-g~iG-----~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGA-SGIG-----RAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCC-CcHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 679999995 5554 67788888999998876533
No 320
>PRK05480 uridine/cytidine kinase; Provisional
Probab=38.90 E-value=57 Score=31.09 Aligned_cols=38 Identities=32% Similarity=0.325 Sum_probs=31.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
..|.++| .||-||=..+..|...| .+.+|.++-.|+|.
T Consensus 7 ~iI~I~G--~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 7 IIIGIAG--GSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 4688888 68999999999999988 45678888888775
No 321
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=38.69 E-value=23 Score=35.87 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=29.3
Q ss_pred ccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 360 l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
+.++|.++.-||=|. .+.+++.+...++|+|||=.|.
T Consensus 23 ~~~~Dlvi~iGGDGT-----lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHH-----HHHHHHHhcCCCCeEEEEeCCC
Confidence 356899999998552 5677787777889999999875
No 322
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.55 E-value=35 Score=33.15 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=24.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.++||||. |+||+. +.+.|.++|++|.+.-.+
T Consensus 6 ~~vlItG~s-~~iG~~-----ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGAS-GGIGQA-----LAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEEECC
Confidence 579999987 788865 456677889998876544
No 323
>PRK11519 tyrosine kinase; Provisional
Probab=38.26 E-value=52 Score=38.05 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|.|.||+. .+|-||-.+++.++..|...|.||-+|-+|+.
T Consensus 527 kvi~vts~-~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 527 NVLMMTGV-SPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred eEEEEECC-CCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 67788864 67999999999999999999999999999986
No 324
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=38.04 E-value=46 Score=35.30 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=31.5
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 9 gv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
.-=-|.||=.+|+.++..|..+|+||-++-+||--|
T Consensus 111 n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ 146 (387)
T TIGR03453 111 NFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQAS 146 (387)
T ss_pred ccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 344578999999999999999999999999999533
No 325
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=37.84 E-value=2e+02 Score=31.26 Aligned_cols=141 Identities=13% Similarity=0.107 Sum_probs=86.3
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCC
Q 010866 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVP 237 (498)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~ 237 (498)
-++++-|+.....-++++..+..|. -..+ -+..|.-...|++.|+.+..+-|.+. -++++++.+--..
T Consensus 232 ~i~~~Y~~W~~~~~~~~V~l~Y~sm---yg~T----~~ma~aiaegl~~~gv~v~~~~~~~~--~~~eI~~~i~~a~--- 299 (388)
T COG0426 232 EIVEAYRDWAEGQPKGKVDLIYDSM---YGNT----EKMAQAIAEGLMKEGVDVEVINLEDA--DPSEIVEEILDAK--- 299 (388)
T ss_pred HHHHHHHHHHccCCcceEEEEEecc---cCCH----HHHHHHHHHHhhhcCCceEEEEcccC--CHHHHHHHHhhcc---
Confidence 3678888887776555455554432 2222 24677888899999999888877765 4455544432211
Q ss_pred CCCeeecCCCCccchhhHHHHHhhhHHHHHHhcCCCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHH
Q 010866 238 EQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSIL 317 (498)
Q Consensus 238 ~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~ 317 (498)
.=|+|.|-+.+- .-|. +..-...+....++++ .+++.|.||+.+.+-.-+.
T Consensus 300 -~~vvGsPT~~~~-~~p~-------------------------i~~~l~~v~~~~~~~k--~~~vfgS~GW~g~av~~i~ 350 (388)
T COG0426 300 -GLVVGSPTINGG-AHPP-------------------------IQTALGYVLALAPKNK--LAGVFGSYGWSGEAVDLIE 350 (388)
T ss_pred -eEEEecCcccCC-CCch-------------------------HHHHHHHHHhccCcCc--eEEEEeccCCCCcchHHHH
Confidence 124455444333 2221 1111111222222222 4899999999998999999
Q ss_pred HHHHHcCCcceee-eEEEEecCC
Q 010866 318 KALLHASVDLRKK-LVIDWIPAC 339 (498)
Q Consensus 318 ~AL~~aG~~~~v~-v~i~~I~se 339 (498)
+.|+.+|.+.... +++++.|++
T Consensus 351 ~~l~~~g~~~~~~~i~vk~~P~~ 373 (388)
T COG0426 351 EKLKDLGFEFGFDGIEVKFRPTE 373 (388)
T ss_pred HHHHhcCcEEeccceEEEecCCH
Confidence 9999999988766 888887765
No 326
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=37.53 E-value=39 Score=33.43 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=28.0
Q ss_pred cCCCEEEEcCCCCC-CCch-hHHHHHHHHHHcCCCEEeehH
Q 010866 361 KGADGILVPGGFGN-RGVQ-GKILAAKYAREHRIPYLGICL 399 (498)
Q Consensus 361 ~~~DGIilpGG~g~-~~~~-g~i~~i~~a~e~~iPiLGICl 399 (498)
.+.|+|.++=|||. .|++ |..-+=-.|...++|++|||-
T Consensus 57 ~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 57 QDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 36799999999998 3543 333333356678999999984
No 327
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.39 E-value=1.1e+02 Score=33.55 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCC----------ChhhhHHHHHhccC
Q 010866 293 GLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKE----------NPDAYKAAWKLLKG 362 (498)
Q Consensus 293 ~~~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~----------~p~~y~~~~~~l~~ 362 (498)
+....-+|+|+| ++..+ .+..+.|.. |+++.+. +........... .+ +.+.+
T Consensus 2 ~~~~~~~v~v~G-~G~sG---~a~~~~L~~-g~~v~v~------D~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 63 (454)
T PRK01368 2 NSHTKQKIGVFG-LGKTG---ISVYEELQN-KYDVIVY------DDLKANRDIFEELYSKNAIAALSD-------SRWQN 63 (454)
T ss_pred cCCCCCEEEEEe-ecHHH---HHHHHHHhC-CCEEEEE------CCCCCchHHHHhhhcCceeccCCh-------hHhhC
Q ss_pred CCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEe
Q 010866 363 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 396 (498)
Q Consensus 363 ~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLG 396 (498)
+|-||+++|..... ..+++|++.++|+++
T Consensus 64 ~d~vV~SPgI~~~~-----p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 64 LDKIVLSPGIPLTH-----EIVKIAKNFNIPITS 92 (454)
T ss_pred CCEEEECCCCCCCC-----HHHHHHHHCCCceec
No 328
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=37.38 E-value=1.3e+02 Score=29.87 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=48.3
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCch
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 378 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~~ 378 (498)
+|.+|+ - -..+...|.++-+..|...... +|++- .++.-.. +....+|.|++.+= .
T Consensus 69 ~ILfVg-T--k~~~~~~v~k~A~~~g~~~v~~---RWlgG-~LTN~~~-----------~~~~~Pdliiv~dp------~ 124 (204)
T PRK04020 69 KILVVS-S--RQYGQKPVQKFAEVVGAKAITG---RFIPG-TLTNPSL-----------KGYIEPDVVVVTDP------R 124 (204)
T ss_pred eEEEEe-C--CHHHHHHHHHHHHHhCCeeecC---ccCCC-cCcCcch-----------hccCCCCEEEEECC------c
Confidence 688887 2 2224456666666666654433 68653 3332110 12246899998762 2
Q ss_pred hHHHHHHHHHHcCCCEEeeh
Q 010866 379 GKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIC 398 (498)
....++++|...++|+.|||
T Consensus 125 ~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 125 GDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred ccHHHHHHHHHhCCCEEEEE
Confidence 34678999999999999999
No 329
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.21 E-value=77 Score=34.63 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.4
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceee
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKK 330 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~ 330 (498)
+|+|+| ++..+ .+..+.|...|+.+.+.
T Consensus 10 ~v~v~G-~G~sG---~~~~~~l~~~g~~v~~~ 37 (468)
T PRK04690 10 RVALWG-WGREG---RAAYRALRAHLPAQALT 37 (468)
T ss_pred EEEEEc-cchhh---HHHHHHHHHcCCEEEEE
Confidence 799998 76444 78999999999987664
No 330
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=36.97 E-value=46 Score=28.57 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.3
Q ss_pred cCCcchHHHHHHHHHHHHHC-CCeeEEeeecccc
Q 010866 11 VSGLGKGVTASSIGVLLKAC-GLRVTCIKIDPYL 43 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~-g~~v~~~K~DpYl 43 (498)
=.|.||=.++..++..|.+. |++|-++-+||.-
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~ 41 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF 41 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC
Confidence 36899999999999999998 9999999999974
No 331
>PRK08703 short chain dehydrogenase; Provisional
Probab=36.96 E-value=41 Score=32.13 Aligned_cols=30 Identities=40% Similarity=0.568 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -++||+.+ .+.|.++|++|.+.
T Consensus 7 k~vlItG~-sggiG~~l-----a~~l~~~g~~V~~~ 36 (239)
T PRK08703 7 KTILVTGA-SQGLGEQV-----AKAYAAAGATVILV 36 (239)
T ss_pred CEEEEECC-CCcHHHHH-----HHHHHHcCCEEEEE
Confidence 78999987 68888765 45666789988763
No 332
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=36.83 E-value=62 Score=30.15 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=28.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+.|.++|. ||-||...+..|...|+..|..+..+-
T Consensus 19 ~~i~i~G~--~GsGKstla~~l~~~l~~~~~~~~~l~ 53 (184)
T TIGR00455 19 VVIWLTGL--SGSGKSTIANALEKKLESKGYRVYVLD 53 (184)
T ss_pred eEEEEECC--CCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 57788884 688999999999999998887665443
No 333
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=36.81 E-value=37 Score=33.14 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|-++||||- ||||+.++- .|-++|++|.+
T Consensus 9 k~vlItGas-~gIG~~ia~-----~l~~~G~~v~~ 37 (260)
T PRK08416 9 KTLVISGGT-RGIGKAIVY-----EFAQSGVNIAF 37 (260)
T ss_pred CEEEEeCCC-chHHHHHHH-----HHHHCCCEEEE
Confidence 789999886 888887654 45568888754
No 334
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=36.72 E-value=81 Score=30.21 Aligned_cols=52 Identities=21% Similarity=0.276 Sum_probs=31.4
Q ss_pred cchHHHH--HHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccc
Q 010866 14 LGKGVTA--SSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEV 67 (498)
Q Consensus 14 lGkGi~~--as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~ 67 (498)
+|-|.|+ ..+-..+. ++.+|.+++-|++-++|+-.+.... -+|....+|.-+
T Consensus 31 ~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gcic 84 (207)
T TIGR00073 31 PGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKEC 84 (207)
T ss_pred CCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCcc
Confidence 4555554 44433332 4689999999998888876665322 155555555443
No 335
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=36.67 E-value=1.7e+02 Score=25.28 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=27.4
Q ss_pred ccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehH
Q 010866 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (498)
Q Consensus 360 l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGICl 399 (498)
+..-|.+|+-.-.|. ....+++++.|++++.|+++||-
T Consensus 45 ~~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 45 VTPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 344577766654443 34578899999999999999983
No 336
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=36.67 E-value=53 Score=33.06 Aligned_cols=34 Identities=41% Similarity=0.400 Sum_probs=27.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|.++||||- |-+.+.+.+.|.++|++|...-.||
T Consensus 6 k~vlVtG~~------G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 6 KVVCVTGAS------GYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CEEEEECCc------hHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 789999984 6677888888888999998765555
No 337
>PRK00698 tmk thymidylate kinase; Validated
Probab=36.61 E-value=65 Score=30.10 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
++|+|.| .+|-||-..+..|...|...|+.|...
T Consensus 4 ~~I~ieG--~~gsGKsT~~~~L~~~l~~~~~~~~~~ 37 (205)
T PRK00698 4 MFITIEG--IDGAGKSTQIELLKELLEQQGRDVVFT 37 (205)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence 7999998 478899999999999999888766544
No 338
>PRK13973 thymidylate kinase; Provisional
Probab=36.60 E-value=71 Score=30.89 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+||++-| +.|-||..-+..|..-|+++|++|....
T Consensus 4 ~~IviEG--~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFEG--GEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEEc--CCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7999988 4799999999999999999999885544
No 339
>PF12846 AAA_10: AAA-like domain
Probab=36.53 E-value=57 Score=31.89 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.4
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
.++|+|. +|-||=.++.++-.-+-.+|..|-++ ||
T Consensus 3 h~~i~G~--tGsGKT~~~~~l~~~~~~~g~~~~i~--D~ 37 (304)
T PF12846_consen 3 HTLILGK--TGSGKTTLLKNLLEQLIRRGPRVVIF--DP 37 (304)
T ss_pred eEEEECC--CCCcHHHHHHHHHHHHHHcCCCEEEE--cC
Confidence 4678885 79999999999998889999887776 76
No 340
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=36.46 E-value=40 Score=32.82 Aligned_cols=30 Identities=47% Similarity=0.674 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 6 k~vlItGas-~gIG~~i-----a~~l~~~G~~V~~~ 35 (262)
T TIGR03325 6 EVVLVTGGA-SGLGRAI-----VDRFVAEGARVAVL 35 (262)
T ss_pred cEEEEECCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 789999984 7888654 56677789988764
No 341
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.43 E-value=26 Score=35.73 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=28.1
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
.++|.++.-||=|. .+.+++.+...++|++||=+|.
T Consensus 32 ~~~D~vi~iGGDGT-----~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF-----FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCcEEEEecCC
Confidence 35799999998552 5667777777899999999874
No 342
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.35 E-value=41 Score=31.86 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|-||||||- +++| +.+.+.|.++|++|..
T Consensus 6 ~~vlItGa~-g~iG-----~~~a~~l~~~G~~V~~ 34 (238)
T PRK05786 6 KKVAIIGVS-EGLG-----YAVAYFALKEGAQVCI 34 (238)
T ss_pred cEEEEECCC-chHH-----HHHHHHHHHCCCEEEE
Confidence 689999994 6666 4556777788988766
No 343
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.29 E-value=1.4e+02 Score=32.85 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=20.5
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCccee
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRK 329 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v 329 (498)
+|+|+| ++..+ .+..+.|...|+.+.+
T Consensus 14 ~v~V~G-~G~sG---~aa~~~L~~~G~~v~~ 40 (488)
T PRK03369 14 PVLVAG-AGVTG---RAVLAALTRFGARPTV 40 (488)
T ss_pred eEEEEc-CCHHH---HHHHHHHHHCCCEEEE
Confidence 789998 76443 6778889999987665
No 344
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=36.23 E-value=44 Score=36.10 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.8
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGg----------v~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|-++|||| .+|--.-|....++...|..+|.+|+++-
T Consensus 189 k~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 189 KRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred CEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 57899999 67777778888899999999999999874
No 345
>PRK08339 short chain dehydrogenase; Provisional
Probab=36.14 E-value=40 Score=33.14 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=23.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- ||||+-+ .+.|-++|++|.+.
T Consensus 9 k~~lItGas-~gIG~ai-----a~~l~~~G~~V~~~ 38 (263)
T PRK08339 9 KLAFTTASS-KGIGFGV-----ARVLARAGADVILL 38 (263)
T ss_pred CEEEEeCCC-CcHHHHH-----HHHHHHCCCEEEEE
Confidence 789999986 7787754 45677789988764
No 346
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.14 E-value=69 Score=34.53 Aligned_cols=62 Identities=29% Similarity=0.462 Sum_probs=41.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCC--CCCccccceEEEccCCccccCCCCc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAG--TMSPFEHGEVFVLDDGGEVDLDLGN 73 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~g--tmsP~~HgEvfV~~dG~E~DlDlG~ 73 (498)
|.|-||| +-||-.|++=|+.+|+..|+++..-. |+-.. .+.+..-.+++|.|=+ |-+||+-+
T Consensus 115 ~vI~VTG----T~GKTTTt~ll~~iL~~~g~~~~~~g-----nig~~~~~~~~~~~~~~~V~E~~-~~~ld~t~ 178 (460)
T PRK01390 115 PFIAITG----TNGKSTTTALIAHILREAGRDVQMGG-----NIGTAVLTLEPPPAGRVYVLELS-SYQIDLAP 178 (460)
T ss_pred CEEEEeC----CCcHHHHHHHHHHHHHhcCCCeEEcC-----ccchhhhhcccCCCCCEEEEEcC-cccccccc
Confidence 5688888 67999999999999999999875432 22111 1112223489999877 44566543
No 347
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=36.05 E-value=38 Score=36.28 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHHHHHCCCeeEEeee-cccccC
Q 010866 12 SGLGKGVTASSIGVLLKACGLRVTCIKI-DPYLNT 45 (498)
Q Consensus 12 S~lGkGi~~as~g~ll~~~g~~v~~~K~-DpYlNv 45 (498)
-|.||=.+++.++..|..+|+||-+|-+ ||--|.
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nl 150 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTA 150 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCch
Confidence 3569999999999999999999999995 996664
No 348
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=35.98 E-value=2.2e+02 Score=29.63 Aligned_cols=111 Identities=15% Similarity=0.270 Sum_probs=62.2
Q ss_pred CCeEEEEEcccCCccchHHH-HHHHHHHcCC-cceeeeEEEEecCCCccccccCCChhhhHHHHHhc--cCCCEEEEcCC
Q 010866 296 EPVRIAMVGKYTGLSDAYLS-ILKALLHASV-DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGG 371 (498)
Q Consensus 296 ~~v~IaIVgkY~~l~day~S-I~~AL~~aG~-~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l--~~~DGIilpGG 371 (498)
++.+|+|+. - ++ .+.- =.+.|+..|. .+.|.+.+.++++..... .....-..|-+.|+.+ ..+||.|+.|.
T Consensus 34 RPL~IlilN-L--MP-~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~Kn-Tp~eHl~~FY~tfeeVk~~~FDG~IiTGA 108 (307)
T COG1897 34 RPLKILILN-L--MP-KKIETETQILRLLGNSPLQVDITLLRIDSHESKN-TPAEHLNSFYCTFEEVKDQKFDGLIITGA 108 (307)
T ss_pred ccceeeeee-c--Cc-hhHHHHHHHHHHhcCCCceEEEEEEEecCcCCCC-CcHHHHHHHhhcHHHHhhcccCceEEeCC
Confidence 357899985 3 22 2222 1334454443 345556677766543211 1011111333445555 46999999998
Q ss_pred CCCC----C---chhHHHHHHHHHHcCCCEEeehHHHHHHHH-Hhcch
Q 010866 372 FGNR----G---VQGKILAAKYAREHRIPYLGICLGMQVAVI-EFARS 411 (498)
Q Consensus 372 ~g~~----~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v-a~g~~ 411 (498)
|=.. . ++.+.+.+.+...+=.-.|=||-|.|...- .+|-.
T Consensus 109 Pve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~ 156 (307)
T COG1897 109 PVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVP 156 (307)
T ss_pred cccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCC
Confidence 7542 1 244555566666666689999999997653 34443
No 349
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.81 E-value=42 Score=33.41 Aligned_cols=30 Identities=33% Similarity=0.507 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- ||||+. +...|.++|++|.+.
T Consensus 7 k~vlVTGas-~gIG~a-----la~~La~~G~~Vv~~ 36 (275)
T PRK05876 7 RGAVITGGA-SGIGLA-----TGTEFARRGARVVLG 36 (275)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999995 899875 456677889988764
No 350
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.74 E-value=60 Score=32.96 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=97.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC-ccccCCCCccccccCC
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG-GEVDLDLGNYERFMDI 80 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG-~E~DlDlG~YeRf~~~ 80 (498)
+.|.||.| ..|.||-.+|+.|+..|..+|+||-++-.|=| .|..|-..=+ ++. +-+++--|
T Consensus 58 ~~I~V~S~-kgGvGKStva~nLA~alA~~G~rVlliDaD~~--------gps~~~~l~~-~~~~g~~~~~~g-------- 119 (265)
T COG0489 58 NVIAVTSG-KGGVGKSTVAVNLAAALAQLGKRVLLLDADLR--------GPSIPRMLGL-ENLPGLTELLAG-------- 119 (265)
T ss_pred eEEEEEeC-CCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCC--------CCchHHHhCC-CCCCCcccccCC--------
Confidence 45666665 47999999999999999999999999877755 3444432111 111 12333233
Q ss_pred CCCCCCcccchHhhHHHHhhh-hcCCCCCCeeEEcccc------hHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccc
Q 010866 81 KLTRDNNITTGKIYQSVIDKE-RKGDYLGKTVQVVPHI------TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGD 153 (498)
Q Consensus 81 ~l~~~~n~t~G~iy~~vi~kE-R~g~ylG~tvQviPHi------t~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGd 153 (498)
+.++.++..- .++-..+-.+. .|++ +..+++.|..+. +..+|++||+..==.||
T Consensus 120 -----------~~~~~~~~~~~~~~lsi~~~~~-~p~~~r~~l~s~~~~qll~~~~-------~~~~D~vIID~PP~~g~ 180 (265)
T COG0489 120 -----------EALEPVIQHDGIKVLSILPLGP-VPVIPRGLLGSKAMLQLLEDVL-------WGEYDYVIIDTPPGTGD 180 (265)
T ss_pred -----------CccccceecCccceEEEEecCC-CCCCChHhhhhHHHHHHHHHHh-------ccCCCEEEEeCCCCchH
Confidence 3233333322 12222222222 4444 467778888875 45699999999877777
Q ss_pred cCcchHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEe
Q 010866 154 IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 217 (498)
Q Consensus 154 iEs~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~R 217 (498)
... +=++.-. +.+++ ..+-|+....=.+.++..++..++..-|+|.-
T Consensus 181 ~d~-------~i~~~~~--~g~vi--------Vt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~N 227 (265)
T COG0489 181 ADA-------TVLQRIP--DGVVI--------VTTPGKTALEDVKKAIDMLEKAGIPVLGVVEN 227 (265)
T ss_pred HHH-------HHHhccC--CeEEE--------EeCCccchHHHHHHHHHHHHhcCCceEEEEec
Confidence 322 2222211 11222 22336666666777889999999999998876
No 351
>PLN02913 dihydrofolate synthetase
Probab=35.71 E-value=26 Score=38.96 Aligned_cols=32 Identities=44% Similarity=0.610 Sum_probs=26.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.|=|+| .=|||-|++-|..+|++.||+|-.-
T Consensus 76 ~vIhVaG----TNGKGSt~a~l~~iL~~aG~~vG~f 107 (510)
T PLN02913 76 KAVHVAG----TKGKGSTAAFLSNILRAQGYSVGCY 107 (510)
T ss_pred cEEEEeC----CCchHHHHHHHHHHHHhcCCCeEEE
Confidence 4566666 3599999999999999999999764
No 352
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=35.71 E-value=2.1e+02 Score=28.57 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=48.2
Q ss_pred CCeEEEEEcccCCc---------cchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc-cCCCE
Q 010866 296 EPVRIAMVGKYTGL---------SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL-KGADG 365 (498)
Q Consensus 296 ~~v~IaIVgkY~~l---------~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l-~~~DG 365 (498)
.+.+|+++..+++. ...+..+.+.|+.. +.+.-. +.. . ..+ .++|.
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~------~l~---~--------------~~IP~~~d~ 200 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEEL------NLA---N--------------EEIPDDADV 200 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-Cceeec------CCc---c--------------cccCCCCCE
Confidence 35688888777776 23678889999988 765432 211 1 233 68899
Q ss_pred EEEcCCCCCCCchhHHHHHHHHHHcCCC
Q 010866 366 ILVPGGFGNRGVQGKILAAKYAREHRIP 393 (498)
Q Consensus 366 IilpGG~g~~~~~g~i~~i~~a~e~~iP 393 (498)
+|+.| |..+-.+....+++.+++++-+
T Consensus 201 Lvi~~-P~~~ls~~e~~~l~~yl~~GG~ 227 (271)
T PF09822_consen 201 LVIAG-PKTDLSEEELYALDQYLMNGGK 227 (271)
T ss_pred EEEEC-CCCCCCHHHHHHHHHHHHcCCe
Confidence 99987 4444445677888887776543
No 353
>PRK06197 short chain dehydrogenase; Provisional
Probab=35.70 E-value=39 Score=33.95 Aligned_cols=30 Identities=33% Similarity=0.444 Sum_probs=22.2
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.|+||||. +|||+.++ +.|.++|++|.+.
T Consensus 17 k~vlItGas-~gIG~~~a-----~~l~~~G~~vi~~ 46 (306)
T PRK06197 17 RVAVVTGAN-TGLGYETA-----AALAAKGAHVVLA 46 (306)
T ss_pred CEEEEcCCC-CcHHHHHH-----HHHHHCCCEEEEE
Confidence 679999995 78887654 4566778887654
No 354
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.70 E-value=42 Score=33.01 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=23.1
Q ss_pred EEEEEeCC-ccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGG-VVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGg-v~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|.++|||| --+|||+.++ +.|-++|++|.+
T Consensus 7 k~~lITGa~~~~GIG~a~a-----~~l~~~G~~v~~ 37 (261)
T PRK08690 7 KKILITGMISERSIAYGIA-----KACREQGAELAF 37 (261)
T ss_pred cEEEEECCCCCCcHHHHHH-----HHHHHCCCEEEE
Confidence 68999998 4689998754 456678998854
No 355
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=35.68 E-value=47 Score=32.31 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=23.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+++||||- +|||+.++- .+.+.+++.|++|.+.-
T Consensus 2 ~vlItGas-~GIG~~~a~-~la~~~~~~g~~V~~~~ 35 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQ-ELAKCLKSPGSVLVLSA 35 (256)
T ss_pred EEEEecCC-CchHHHHHH-HHHHhhccCCcEEEEEE
Confidence 68999986 999987654 33333445899987653
No 356
>PRK09620 hypothetical protein; Provisional
Probab=35.57 E-value=51 Score=32.83 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=31.5
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGg----------v~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-|+||+| .+|--=-|-+.+.|...|..+|++|+.+
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li 49 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYL 49 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEE
Confidence 56889988 6777777999999999999999999886
No 357
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.47 E-value=55 Score=37.06 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHC--CCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKAC--GLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~--g~~v~~~K~DpY 42 (498)
+.|.++|. +|.||=.+++.|+..+..+ |.+|.++-.|+|
T Consensus 351 ~vIaLVGP--tGvGKTTtaakLAa~la~~~~gkkVaLIdtDty 391 (559)
T PRK12727 351 GVIALVGP--TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ 391 (559)
T ss_pred CEEEEECC--CCCCHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 35667775 7999999999999887766 579999999988
No 358
>PRK05993 short chain dehydrogenase; Provisional
Probab=35.09 E-value=42 Score=33.18 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=24.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|-++|||| -+|||+.+ .+.|.++|++|.+.--+
T Consensus 5 k~vlItGa-sggiG~~l-----a~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGC-SSGIGAYC-----ARALQSDGWRVFATCRK 37 (277)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCEEEEEECC
Confidence 68999998 47888654 56677899998876433
No 359
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=34.94 E-value=46 Score=33.09 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=24.3
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~-S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||-= ||||+.++ +.|-+.|++|.+.
T Consensus 8 k~~lVTGas~~~GIG~aiA-----~~la~~Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIA-----KQLAAQGAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHH-----HHHHhCCCEEEEe
Confidence 7899999986 69998765 4566789988653
No 360
>PRK07024 short chain dehydrogenase; Provisional
Probab=34.83 E-value=42 Score=32.57 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
+|-++|||| -||||+.++ ..|.++|++|.+.-.
T Consensus 2 ~~~vlItGa-s~gIG~~la-----~~l~~~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALA-----REYARQGATLGLVAR 34 (257)
T ss_pred CCEEEEEcC-CcHHHHHHH-----HHHHHCCCEEEEEeC
Confidence 367999998 577877655 456678998877543
No 361
>PRK05717 oxidoreductase; Validated
Probab=34.38 E-value=44 Score=32.35 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- ++||+.+ .+.|-++|++|.++
T Consensus 11 k~vlItG~s-g~IG~~~-----a~~l~~~g~~v~~~ 40 (255)
T PRK05717 11 RVALVTGAA-RGIGLGI-----AAWLIAEGWQVVLA 40 (255)
T ss_pred CEEEEeCCc-chHHHHH-----HHHHHHcCCEEEEE
Confidence 789999995 6666654 46666789888776
No 362
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.03 E-value=2.1e+02 Score=24.25 Aligned_cols=78 Identities=18% Similarity=0.085 Sum_probs=43.6
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCC-ccccccCCChhhhHHHHHhccCCCEEEEcCCCCCCCc
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 377 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~-l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~~~ 377 (498)
+|++||.- .+....+.+.++..|+.... ...+. .+. . -......+.++|.||++=++-.-.
T Consensus 1 ~vliVGG~---~~~~~~~~~~~~~~G~~~~~------hg~~~~~~~-~-------~~~l~~~i~~aD~VIv~t~~vsH~- 62 (97)
T PF10087_consen 1 SVLIVGGR---EDRERRYKRILEKYGGKLIH------HGRDGGDEK-K-------ASRLPSKIKKADLVIVFTDYVSHN- 62 (97)
T ss_pred CEEEEcCC---cccHHHHHHHHHHcCCEEEE------EecCCCCcc-c-------hhHHHHhcCCCCEEEEEeCCcChH-
Confidence 47888832 23455667777778876543 21111 111 0 001235788999999986543211
Q ss_pred hhHHHHHHHHHHcCCCEE
Q 010866 378 QGKILAAKYAREHRIPYL 395 (498)
Q Consensus 378 ~g~i~~i~~a~e~~iPiL 395 (498)
....+-+.|.+.++|+.
T Consensus 63 -~~~~vk~~akk~~ip~~ 79 (97)
T PF10087_consen 63 -AMWKVKKAAKKYGIPII 79 (97)
T ss_pred -HHHHHHHHHHHcCCcEE
Confidence 22334456777899986
No 363
>PRK05866 short chain dehydrogenase; Provisional
Probab=33.84 E-value=42 Score=33.85 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -||||+.++ +.|.++|++|.+.
T Consensus 41 k~vlItGa-sggIG~~la-----~~La~~G~~Vi~~ 70 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAA-----EQFARRGATVVAV 70 (293)
T ss_pred CEEEEeCC-CcHHHHHHH-----HHHHHCCCEEEEE
Confidence 67999998 477776554 4566789887664
No 364
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=33.79 E-value=80 Score=24.97 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=23.0
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|+++|+ +|-||...+..+...| .|.++..+.
T Consensus 2 i~i~G~--~gsGKst~~~~l~~~l--~~~~~~~i~ 32 (69)
T cd02019 2 IAITGG--SGSGKSTVAKKLAEQL--GGRSVVVLD 32 (69)
T ss_pred EEEECC--CCCCHHHHHHHHHHHh--cCCCEEEEe
Confidence 678886 5667988887777777 577777664
No 365
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=33.69 E-value=58 Score=25.98 Aligned_cols=38 Identities=26% Similarity=0.498 Sum_probs=30.0
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccc
Q 010866 14 LGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFE 54 (498)
Q Consensus 14 lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~ 54 (498)
+|=|++.-+.+..|+.+|++|+++--.+++- |.+..+.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G---G~~~~~~ 39 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEKNDRLG---GRARSFR 39 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSSSSS---GGGCEEE
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEecCcccC---cceeEEE
Confidence 5778999999999999999999999888863 4444443
No 366
>PRK00889 adenylylsulfate kinase; Provisional
Probab=33.56 E-value=83 Score=29.01 Aligned_cols=38 Identities=32% Similarity=0.426 Sum_probs=30.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
+.|.++| .+|-||=..|..|...|+..|.+|..+--|.
T Consensus 5 ~~i~~~G--~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTG--LSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEEC--CCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 4566676 6899999999999999999998888775553
No 367
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.23 E-value=50 Score=31.95 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|.++||||- ||||+. +.+.|-++|++|.+
T Consensus 8 k~~lItGas-~gIG~~-----~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGT-RGIGRA-----IAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEE
Confidence 789999995 888865 55677788998865
No 368
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=33.19 E-value=51 Score=33.64 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=26.7
Q ss_pred EEEeCCccCCcchHHHHHH-HHHHHHHCCCeeEEeeecc
Q 010866 4 VLVTGGVVSGLGKGVTASS-IGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as-~g~ll~~~g~~v~~~K~Dp 41 (498)
|-|||= -|.||=..||. +-++++..||+|.++--||
T Consensus 3 IaI~GK--GG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 3 IAITGK--GGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred EEEecC--CCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 445542 36799999999 5555555559999999999
No 369
>PRK07831 short chain dehydrogenase; Provisional
Probab=33.14 E-value=54 Score=31.86 Aligned_cols=31 Identities=32% Similarity=0.346 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++||||.=||||+.++ +.|.++|++|.+.
T Consensus 18 k~vlItG~sg~gIG~~ia-----~~l~~~G~~V~~~ 48 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATA-----RRALEEGARVVIS 48 (262)
T ss_pred CEEEEECCCcccHHHHHH-----HHHHHcCCEEEEE
Confidence 679999997568886554 6677889987663
No 370
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=32.80 E-value=31 Score=35.18 Aligned_cols=37 Identities=41% Similarity=0.534 Sum_probs=26.3
Q ss_pred ccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHHH
Q 010866 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 401 (498)
Q Consensus 360 l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClGm 401 (498)
..++|.+++-||=|. ...+++.+...++|+|||=.|.
T Consensus 74 ~~~~D~ii~lGGDGT-----~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGT-----FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHHH-----HHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCHH-----HHHHHHHhccCCCcEEeecCCC
Confidence 468999999998432 4455666655689999998663
No 371
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=32.78 E-value=44 Score=32.45 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=21.9
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
-++||||- +|||+.+ .+.|..+|++|.+.
T Consensus 2 ~vlItGas-~gIG~ai-----a~~l~~~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNV-----ARELLKKGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHH-----HHHHHHcCCEEEEE
Confidence 37899985 7888765 46677889988764
No 372
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=32.74 E-value=2.2e+02 Score=27.37 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.0
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 46999988653211 1223466777889998765
No 373
>PRK06523 short chain dehydrogenase; Provisional
Probab=32.28 E-value=60 Score=31.34 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=25.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.++||||. +|||+ ++.+.|.++|++|.+.--+
T Consensus 10 k~vlItGas-~gIG~-----~ia~~l~~~G~~v~~~~r~ 42 (260)
T PRK06523 10 KRALVTGGT-KGIGA-----ATVARLLEAGARVVTTARS 42 (260)
T ss_pred CEEEEECCC-CchhH-----HHHHHHHHCCCEEEEEeCC
Confidence 689999984 56664 5667777899999887554
No 374
>PRK05642 DNA replication initiation factor; Validated
Probab=32.26 E-value=33 Score=33.89 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=45.2
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCC
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDG 64 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG 64 (498)
.+|+.|. ||.||==-+.+++.-+..+|.+|..+..+=+.+-.+..+..|+...+.+.||=
T Consensus 47 ~l~l~G~--~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi 106 (234)
T PRK05642 47 LIYLWGK--DGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDL 106 (234)
T ss_pred eEEEECC--CCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEech
Confidence 4678886 79999988999999888899999888776655543444555666677777763
No 375
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.24 E-value=1.1e+02 Score=31.34 Aligned_cols=31 Identities=35% Similarity=0.569 Sum_probs=22.1
Q ss_pred CCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 362 ~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
++|.++.-||=|. .+ +.++....|+|||=+|
T Consensus 52 ~~D~vi~lGGDGT-----~L---~a~~~~~~PilGIN~G 82 (271)
T PRK01185 52 NADVIITIGGDGT-----IL---RTLQRAKGPILGINMG 82 (271)
T ss_pred CCCEEEEEcCcHH-----HH---HHHHHcCCCEEEEECC
Confidence 6899999998653 23 3334445799999887
No 376
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.12 E-value=1.9e+02 Score=27.43 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhH-HHHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHc
Q 010866 312 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREH 390 (498)
Q Consensus 312 ay~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~-~~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~ 390 (498)
+-..+.+.|...|+++... .+-+++. +.-. ...+.+..+|-||.+||-|.....-..+++..+.
T Consensus 20 n~~~l~~~L~~~G~~v~~~----~~v~Dd~---------~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~-- 84 (170)
T cd00885 20 NAAFLAKELAELGIEVYRV----TVVGDDE---------DRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAF-- 84 (170)
T ss_pred HHHHHHHHHHHCCCEEEEE----EEeCCCH---------HHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHh--
Confidence 3456778888899876432 2223221 1111 1223345799999999887654445567777776
Q ss_pred CCCEEeehHHHHHHHHHhcc
Q 010866 391 RIPYLGICLGMQVAVIEFAR 410 (498)
Q Consensus 391 ~iPiLGIClGmQll~va~g~ 410 (498)
++|+.+.=--++.|--.|..
T Consensus 85 ~~~l~~~~e~~~~i~~~~~~ 104 (170)
T cd00885 85 GRPLVLDEEALERIEARFAR 104 (170)
T ss_pred CCCcccCHHHHHHHHHHHHh
Confidence 45666666666666544543
No 377
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=32.03 E-value=2.2e+02 Score=26.02 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++|++++++.... ...+...+.+.++|++.+
T Consensus 57 ~~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 57 QGVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred cCCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 36999998875321 112566777889999876
No 378
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=31.98 E-value=57 Score=32.10 Aligned_cols=32 Identities=34% Similarity=0.378 Sum_probs=26.2
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|+|||| .|-+.+.|..-|.++|+.|..+.-.+
T Consensus 3 ILVtG~------tGfiG~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 3 ILVTGG------AGFIGSHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred EEEEcC------cccHHHHHHHHHHhCCCeEEEEeCCC
Confidence 899998 56777899999999999888765433
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=31.88 E-value=48 Score=32.43 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=22.8
Q ss_pred CcchHHHHHHHHHHHHH--CCCeeEEeeec
Q 010866 13 GLGKGVTASSIGVLLKA--CGLRVTCIKID 40 (498)
Q Consensus 13 ~lGkGi~~as~g~ll~~--~g~~v~~~K~D 40 (498)
|=|||-|+|++|..+++ +|++|.++.|=
T Consensus 30 g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl 59 (191)
T PRK05986 30 GNGKGKSTAAFGMALRAVGHGKKVGVVQFI 59 (191)
T ss_pred CCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 45999999999998886 57888887763
No 380
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=31.78 E-value=62 Score=34.24 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=27.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.|=||| .=|||-|++=|..+|++.|++|-..
T Consensus 19 ~vI~VtG----TNGKgSt~~~l~~iL~~~g~~vg~~ 50 (397)
T TIGR01499 19 PVIHVAG----TNGKGSTCAFLESILRAAGYKVGLF 50 (397)
T ss_pred CEEEEeC----CCChHHHHHHHHHHHHHcCCCeeEE
Confidence 5677777 4699999999999999999999665
No 381
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.75 E-value=93 Score=26.57 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.3
Q ss_pred EEEEEeCCccCCcchHHH-HHHHHHHHHHCCCeeEEeeeccc
Q 010866 2 KYVLVTGGVVSGLGKGVT-ASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~-~as~g~ll~~~g~~v~~~K~DpY 42 (498)
|.++||| ||+|-... +..+=.+|+++|+.+.+...+.+
T Consensus 4 kILvvCg---sG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~ 42 (94)
T PRK10310 4 KIIVACG---GAVATSTMAAEEIKELCQSHNIPVELIQCRVN 42 (94)
T ss_pred eEEEECC---CchhHHHHHHHHHHHHHHHCCCeEEEEEecHH
Confidence 4678888 57777777 67888999999999998886654
No 382
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=31.45 E-value=58 Score=31.71 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=24.2
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv-~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++||||- .+|||+. +.+.|.++|.+|.+.
T Consensus 7 k~vlVtGas~~~giG~~-----~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAA-----ICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHH-----HHHHHHHCCCeEEEE
Confidence 789999998 4899965 456677789887654
No 383
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=31.39 E-value=80 Score=32.32 Aligned_cols=35 Identities=46% Similarity=0.589 Sum_probs=27.7
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
..+|.+++-||=|. ...+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH-----HHHHHHHhccCCCCEEEEeCC
Confidence 56788888887542 567778888888999999998
No 384
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=31.25 E-value=59 Score=32.81 Aligned_cols=28 Identities=32% Similarity=0.597 Sum_probs=23.1
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHH-CCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~-~g~~v 34 (498)
|+.|.+|||.-|| | |++.++|++ .|+.|
T Consensus 1 M~iIGlTGgIgSG--K----StVs~~L~~~~G~~v 29 (244)
T PTZ00451 1 MILIGLTGGIACG--K----STVSRILREEHHIEV 29 (244)
T ss_pred CeEEEEECCCCCC--H----HHHHHHHHHHcCCeE
Confidence 7889999998774 5 678899998 59877
No 385
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=31.21 E-value=40 Score=35.21 Aligned_cols=32 Identities=44% Similarity=0.641 Sum_probs=24.6
Q ss_pred EEEEeCCcc---CCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 3 YVLVTGGVV---SGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 3 ~i~vtGgv~---S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+|||||=.. .|.| +|=||++|+++||+|-+|-
T Consensus 19 vilVtGDAYVDHPsFG----~AiIgR~Le~~GyrVgIia 53 (302)
T PF08497_consen 19 VILVTGDAYVDHPSFG----AAIIGRVLEAHGYRVGIIA 53 (302)
T ss_pred EEEEeCcccccCcchh----HHHHHHHHHHcCCeEEEEe
Confidence 688888654 3554 5778999999999998884
No 386
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=31.17 E-value=62 Score=29.71 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=20.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll 27 (498)
+++|+|+|+ +|-||...+..|..-+
T Consensus 3 ~~ii~i~G~--~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG--PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHh
Confidence 468999998 9999999988887643
No 387
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=31.16 E-value=55 Score=27.87 Aligned_cols=38 Identities=24% Similarity=0.189 Sum_probs=23.2
Q ss_pred hHHHHHhcc--CCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEE
Q 010866 353 YKAAWKLLK--GADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 395 (498)
Q Consensus 353 y~~~~~~l~--~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiL 395 (498)
|.+..+.+. ++|.++++..+. .-.+.++.+.+.++|+|
T Consensus 51 ~~~~~~ll~~~~~D~V~I~tp~~-----~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 51 YTDLEELLADEDVDAVIIATPPS-----SHAEIAKKALEAGKHVL 90 (120)
T ss_dssp ESSHHHHHHHTTESEEEEESSGG-----GHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHHHhhcCCEEEEecCCc-----chHHHHHHHHHcCCEEE
Confidence 444445554 689999987432 23455666666666665
No 388
>PRK07063 short chain dehydrogenase; Provisional
Probab=31.04 E-value=57 Score=31.55 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++||||- +|||+. +.+.|-++|++|.+.
T Consensus 8 k~vlVtGas-~gIG~~-----~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 8 KVALVTGAA-QGIGAA-----IARAFAREGAAVALA 37 (260)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEE
Confidence 679999985 788754 456677889988764
No 389
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=31.03 E-value=65 Score=30.58 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
-++++|. +|.||=-.|++||.-+-.+|++|..+..+-.+
T Consensus 49 ~l~l~G~--~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~ 87 (178)
T PF01695_consen 49 NLILYGP--PGTGKTHLAVAIANEAIRKGYSVLFITASDLL 87 (178)
T ss_dssp EEEEEES--TTSSHHHHHHHHHHHHHHTT--EEEEEHHHHH
T ss_pred EEEEEhh--HhHHHHHHHHHHHHHhccCCcceeEeecCcee
Confidence 4678886 79999999999999888899999998876443
No 390
>PRK07806 short chain dehydrogenase; Provisional
Probab=30.88 E-value=60 Score=31.03 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=21.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|-++||||- ++||+.++- .|.++|++|.+
T Consensus 7 k~vlItGas-ggiG~~l~~-----~l~~~G~~V~~ 35 (248)
T PRK07806 7 KTALVTGSS-RGIGADTAK-----ILAGAGAHVVV 35 (248)
T ss_pred cEEEEECCC-CcHHHHHHH-----HHHHCCCEEEE
Confidence 779999984 788877654 35567888765
No 391
>PRK07814 short chain dehydrogenase; Provisional
Probab=30.85 E-value=56 Score=31.87 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|.++|||| -++||+ ++.+.|.++|++|.+.-.+|
T Consensus 11 ~~vlItGa-sggIG~-----~~a~~l~~~G~~Vi~~~r~~ 44 (263)
T PRK07814 11 QVAVVTGA-GRGLGA-----AIALAFAEAGADVLIAARTE 44 (263)
T ss_pred CEEEEECC-CChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 67899998 456665 45677778999987765444
No 392
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=30.72 E-value=68 Score=30.61 Aligned_cols=28 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
|+-|.||||.-| ||. +++.+|++.|+.|
T Consensus 2 ~~~i~ltG~~gs--GKs----t~~~~l~~~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGS--GKS----TVANLFAELGAPV 29 (194)
T ss_pred CeEEEEECCCCC--CHH----HHHHHHHHcCCEE
Confidence 577999999755 564 5667777777643
No 393
>PRK06182 short chain dehydrogenase; Validated
Probab=30.71 E-value=59 Score=31.86 Aligned_cols=31 Identities=42% Similarity=0.482 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|.|+|||| -||||+.+ .+.|.++|++|...-
T Consensus 4 k~vlItGa-sggiG~~l-----a~~l~~~G~~V~~~~ 34 (273)
T PRK06182 4 KVALVTGA-SSGIGKAT-----ARRLAAQGYTVYGAA 34 (273)
T ss_pred CEEEEECC-CChHHHHH-----HHHHHHCCCEEEEEe
Confidence 78999997 47888764 456667899988653
No 394
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=30.71 E-value=56 Score=33.96 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=22.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
|+.|+||| +||-||-.+. +.|+..||-+
T Consensus 1 m~~vIiTG--lSGaGKs~Al----~~lED~Gy~c 28 (284)
T PF03668_consen 1 MELVIITG--LSGAGKSTAL----RALEDLGYYC 28 (284)
T ss_pred CeEEEEeC--CCcCCHHHHH----HHHHhcCeeE
Confidence 78999999 8999996544 6788888865
No 395
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.68 E-value=57 Score=32.02 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=22.3
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~-S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|.++||||-= +|||+.+ .+.|..+|++|.+
T Consensus 9 k~~lITGas~~~GIG~a~-----a~~la~~G~~v~~ 39 (260)
T PRK06603 9 KKGLITGIANNMSISWAI-----AQLAKKHGAELWF 39 (260)
T ss_pred cEEEEECCCCCcchHHHH-----HHHHHHcCCEEEE
Confidence 7899999964 4777754 4677778998754
No 396
>PRK07985 oxidoreductase; Provisional
Probab=30.41 E-value=59 Score=32.74 Aligned_cols=30 Identities=33% Similarity=0.513 Sum_probs=22.8
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- +|||+. +.+.|.++|++|.+.
T Consensus 50 k~vlITGas-~gIG~a-----ia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 50 RKALVTGGD-SGIGRA-----AAIAYAREGADVAIS 79 (294)
T ss_pred CEEEEECCC-CcHHHH-----HHHHHHHCCCEEEEe
Confidence 679999984 788864 556677889988653
No 397
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.99 E-value=2e+02 Score=30.72 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=33.7
Q ss_pred cCCCEEEEcCCCCC----C---C-----chhHHHHHHHHHHcCCCEE---ee-hHHHHHHHHHhcchhc
Q 010866 361 KGADGILVPGGFGN----R---G-----VQGKILAAKYAREHRIPYL---GI-CLGMQVAVIEFARSVL 413 (498)
Q Consensus 361 ~~~DGIilpGG~g~----~---~-----~~g~i~~i~~a~e~~iPiL---GI-ClGmQll~va~g~~v~ 413 (498)
..+|+|.++=|||. + + +....+..+.+...++|++ || +-|--.-++++|++..
T Consensus 170 aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~V 238 (343)
T TIGR01305 170 SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFV 238 (343)
T ss_pred cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEE
Confidence 47999998867775 2 1 2223333444444578887 34 4566777889998754
No 398
>PRK08309 short chain dehydrogenase; Provisional
Probab=29.98 E-value=85 Score=29.85 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
++|||| ||+| .+ +.+.|.++|++|.+.
T Consensus 3 vlVtGG--tG~g----g~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 3 ALVIGG--TGML----KR-VSLWLCEKGFHVSVI 29 (177)
T ss_pred EEEECc--CHHH----HH-HHHHHHHCcCEEEEE
Confidence 789999 4554 23 677778899999864
No 399
>PLN00198 anthocyanidin reductase; Provisional
Probab=29.86 E-value=83 Score=31.98 Aligned_cols=34 Identities=38% Similarity=0.396 Sum_probs=26.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|-|+||||- |-+.+.|...|..+|++|..+-.|+
T Consensus 10 ~~vlItG~~------GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 10 KTACVIGGT------GFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CeEEEECCc------hHHHHHHHHHHHHCCCEEEEEECCC
Confidence 679999985 5667778888888999998765554
No 400
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=29.85 E-value=1.3e+02 Score=31.58 Aligned_cols=73 Identities=18% Similarity=0.267 Sum_probs=48.5
Q ss_pred cchHhhHHHHhhhhcCC-------CCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcc----
Q 010866 89 TTGKIYQSVIDKERKGD-------YLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 157 (498)
Q Consensus 89 t~G~iy~~vi~kER~g~-------ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~---- 157 (498)
....+|.+..++-|--. +.|.|.+-.|+ ++..+..-+ ....|++|+|++|| .|.=+-
T Consensus 75 ~~~S~y~rl~~~n~c~hrd~qN~G~sGatSrdl~~-------~l~~Ll~n~---~~~~P~lVtI~lGg--ND~C~g~~d~ 142 (305)
T cd01826 75 FTDSLYLRLRERNRCNHRDYQNLGVNGASSRNLLS-------IIKSIARNR---TTDKPALVIYSMIG--NDVCNGPNDT 142 (305)
T ss_pred ccccHHHHHhhccccchhhHHHhccchhhhHHHHH-------HHHHhcccc---ccCCCeEEEEEecc--chhhcCCCcc
Confidence 34568999888766444 47777666554 444433111 23468999999999 787431
Q ss_pred -----h------HHHHHHHhhhhcCCC
Q 010866 158 -----P------FIEALGQFSYRVGPG 173 (498)
Q Consensus 158 -----p------f~ea~rq~~~~~g~~ 173 (498)
| +.+++++||....+.
T Consensus 143 ~~~tp~eefr~NL~~~L~~Lr~~lP~~ 169 (305)
T cd01826 143 INHTTPEEFYENVMEALKYLDTKLPNG 169 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 788899999887653
No 401
>PRK09242 tropinone reductase; Provisional
Probab=29.83 E-value=58 Score=31.47 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -++||+. +.+.|.++|++|.+.
T Consensus 10 k~~lItGa-~~gIG~~-----~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 10 QTALITGA-SKGIGLA-----IAREFLGLGADVLIV 39 (257)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHcCCEEEEE
Confidence 78999988 5677754 455677789887665
No 402
>PRK09186 flagellin modification protein A; Provisional
Probab=29.82 E-value=63 Score=30.98 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=23.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|.++||||- ++||+. +.+.|.++|++|.+.-
T Consensus 5 k~vlItGas-~giG~~-----~a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 5 KTILITGAG-GLIGSA-----LVKAILEAGGIVIAAD 35 (256)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHCCCEEEEEe
Confidence 789999994 677765 4566778899987763
No 403
>PRK06761 hypothetical protein; Provisional
Probab=29.74 E-value=59 Score=33.60 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=29.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
++|+|+|- +|-||-..+..+...|..+|++|..
T Consensus 4 ~lIvI~G~--~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGL--PGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECC--CCCCHHHHHHHHHHhcCcCceEEEE
Confidence 68999996 8999999999999999999998876
No 404
>PRK06720 hypothetical protein; Provisional
Probab=29.74 E-value=61 Score=30.44 Aligned_cols=30 Identities=37% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -+|+|..++ ..|..+|++|.+.
T Consensus 17 k~~lVTGa-~~GIG~aia-----~~l~~~G~~V~l~ 46 (169)
T PRK06720 17 KVAIVTGG-GIGIGRNTA-----LLLAKQGAKVIVT 46 (169)
T ss_pred CEEEEecC-CChHHHHHH-----HHHHHCCCEEEEE
Confidence 68999999 467887765 3456678876654
No 405
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=29.72 E-value=64 Score=33.27 Aligned_cols=53 Identities=34% Similarity=0.562 Sum_probs=36.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEEEccCCccccCCCCcccccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFM 78 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvfV~~dG~E~DlDlG~YeRf~ 78 (498)
|=+||- -|.||=.....+++.|.++|.+|.++-+||= |||-.|-. ||.=-|..
T Consensus 32 iGiTG~--PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS--------Sp~tGGAl------------LGDRiRM~ 84 (266)
T PF03308_consen 32 IGITGP--PGAGKSTLIDALIRELRERGKRVAVLAVDPS--------SPFTGGAL------------LGDRIRMQ 84 (266)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG--------GGCC---S------------S--GGGCH
T ss_pred EEeeCC--CCCcHHHHHHHHHHHHhhcCCceEEEEECCC--------CCCCCCcc------------cccHHHhc
Confidence 345653 5889999999999999999999999999995 78888875 77666654
No 406
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=29.69 E-value=3.5e+02 Score=22.96 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.1
Q ss_pred ccCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeeh
Q 010866 360 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 360 l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIC 398 (498)
+..-|.+|+---.|.. ...+++++.+++++.|+.+|+
T Consensus 58 ~~~~~~~i~iS~~g~~--~~~~~~~~~a~~~g~~iv~iT 94 (139)
T cd05013 58 LTPGDVVIAISFSGET--KETVEAAEIAKERGAKVIAIT 94 (139)
T ss_pred CCCCCEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEc
Confidence 3344555554433432 456788899999999999997
No 407
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.66 E-value=51 Score=31.73 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccC-CCEEEEcCCCCCCCchhHHHHHHHHHHcCC
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG-ADGILVPGGFGNRGVQGKILAAKYAREHRI 392 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~-~DGIilpGG~g~~~~~g~i~~i~~a~e~~i 392 (498)
.-+.+.|+.+|.++... . -|+ ++.+. -.....+.+.+ +|.|+..||-|-....-..++++...++.+
T Consensus 30 ~~l~~~L~~ag~~~~~~-~--iV~-D~~~~--------I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dKei 97 (169)
T COG0521 30 PLLVELLEEAGHNVAAY-T--IVP-DDKEQ--------IRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDKEI 97 (169)
T ss_pred hHHHHHHHHcCCccceE-E--EeC-CCHHH--------HHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhccC
Confidence 45788899999887221 1 222 22110 00111122233 899999998776433335678888888888
Q ss_pred CEEe
Q 010866 393 PYLG 396 (498)
Q Consensus 393 PiLG 396 (498)
|=||
T Consensus 98 pGFg 101 (169)
T COG0521 98 PGFG 101 (169)
T ss_pred CcHH
Confidence 8543
No 408
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=29.33 E-value=61 Score=33.28 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=24.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+|+++|||. -||||+- +.+.|..+|++|..+=
T Consensus 6 ~~~~lITGA-SsGIG~~-----~A~~lA~~g~~liLva 37 (265)
T COG0300 6 GKTALITGA-SSGIGAE-----LAKQLARRGYNLILVA 37 (265)
T ss_pred CcEEEEECC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 378888875 4788764 5688888888887763
No 409
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.33 E-value=1.7e+02 Score=26.06 Aligned_cols=70 Identities=23% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHH-HHHhccCCCEEEEcCCCCCCCchhHHHHHHHHHHcC
Q 010866 313 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA-AWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHR 391 (498)
Q Consensus 313 y~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~-~~~~l~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~ 391 (498)
-..+.+.|+..|+++... .+. +++.+ .-.+ ..+.+..+|-|+..||-|.-......++++.+....
T Consensus 20 ~~~l~~~l~~~G~~~~~~-~~v---~Dd~~---------~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~ 86 (135)
T smart00852 20 GPALAELLTELGIEVTRY-VIV---PDDKE---------AIKEALREALERADLVITTGGTGPGPDDVTPEAVAEALGKE 86 (135)
T ss_pred HHHHHHHHHHCCCeEEEE-EEe---CCCHH---------HHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCc
Confidence 346778899999875432 111 12211 0111 112335799999999876422233445555554434
Q ss_pred CCEE
Q 010866 392 IPYL 395 (498)
Q Consensus 392 iPiL 395 (498)
+|+.
T Consensus 87 ~~~~ 90 (135)
T smart00852 87 LPGF 90 (135)
T ss_pred CCCh
Confidence 5543
No 410
>PRK05599 hypothetical protein; Provisional
Probab=29.22 E-value=50 Score=32.10 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=21.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -+|||+.++.+ |. +|++|.+.
T Consensus 1 ~~vlItGa-s~GIG~aia~~-----l~-~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGG-TSDIAGEIATL-----LC-HGEDVVLA 29 (246)
T ss_pred CeEEEEeC-ccHHHHHHHHH-----Hh-CCCEEEEE
Confidence 46899999 58999988764 33 38877553
No 411
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=29.18 E-value=1.1e+02 Score=29.32 Aligned_cols=106 Identities=19% Similarity=0.079 Sum_probs=62.5
Q ss_pred hhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcchHHHHHHHhhhhcCCCCEEEEEE
Q 010866 101 ERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 180 (498)
Q Consensus 101 ER~g~ylG~tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~pf~ea~rq~~~~~g~~n~~~ih~ 180 (498)
.=+|.|-|...++=..+.+++.++|++..+ ..+.=+++-.+||-=|===+...+|.+|+ ++.. + +-.
T Consensus 52 ~~~G~~~~~~~~~g~~~~~~~~~~ir~~le------~~d~~~i~~slgGGTGsG~~~~i~~~~~~----~~~~-~--~~~ 118 (192)
T smart00864 52 WTRGLGAGADPEVGREAAEESLDEIREELE------GADGVFITAGMGGGTGTGAAPVIAEIAKE----YGIL-T--VAV 118 (192)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHHHHHhc------CCCEEEEeccCCCCccccHHHHHHHHHHH----cCCc-E--EEE
Confidence 346889898888888899999999998873 22222455577775444334455666663 4432 2 444
Q ss_pred eeeeeecCCCccccCCchhhHHHhhcCCCcccEEEEecCCCCC
Q 010866 181 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALD 223 (498)
Q Consensus 181 t~vp~~~~~~e~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~ 223 (498)
...|.. .|-.++| +.++..|+.+.=..|.+++=+-..+.
T Consensus 119 ~v~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l~ 157 (192)
T smart00864 119 VTKPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDALL 157 (192)
T ss_pred EEEeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHHH
Confidence 566733 3333322 34444444444467877776554443
No 412
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=28.96 E-value=65 Score=26.57 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHCCCeeEEeeecccccCCCCCCCccccceEE-EccCCccccCCC
Q 010866 16 KGVTASSIGVLLKACGLRVTCIKIDPYLNTDAGTMSPFEHGEVF-VLDDGGEVDLDL 71 (498)
Q Consensus 16 kGi~~as~g~ll~~~g~~v~~~K~DpYlNvd~gtmsP~~HgEvf-V~~dG~E~DlDl 71 (498)
..++.+.+=..|+..||+|.-+|+|- |.+ =||. ...||...++.+
T Consensus 27 ~~~~~~~~~~~l~~~G~~v~~ve~~~----~g~-------yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 27 DWLSIEQAVAKLEAQGYQVREVEFDD----DGC-------YEVEARDKDGKKVEVYV 72 (83)
T ss_pred ccCCHHHHHHHHHhcCCceEEEEEcC----CCE-------EEEEEEECCCCEEEEEE
Confidence 34456777788999999999999941 111 2888 778888877744
No 413
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=28.89 E-value=77 Score=31.37 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.4
Q ss_pred EEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 4 VLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 4 i~vtGg----------v~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|+||+| .+|.-.-|-+.++|...|-++|++|+.+-
T Consensus 3 vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 3 ILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred EEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEE
Confidence 678888 67888899999999999999999999873
No 414
>PLN02780 ketoreductase/ oxidoreductase
Probab=28.87 E-value=53 Score=33.82 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=24.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|.++|||| -||||+.+ .+.|..+|++|.+.=.
T Consensus 54 ~~~lITGA-s~GIG~al-----A~~La~~G~~Vil~~R 85 (320)
T PLN02780 54 SWALVTGP-TDGIGKGF-----AFQLARKGLNLVLVAR 85 (320)
T ss_pred CEEEEeCC-CcHHHHHH-----HHHHHHCCCCEEEEEC
Confidence 68999998 58888765 4667788999887643
No 415
>PRK08267 short chain dehydrogenase; Provisional
Probab=28.85 E-value=82 Score=30.47 Aligned_cols=31 Identities=39% Similarity=0.698 Sum_probs=23.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
||-++||||. ++||+-+ .+.|-++|++|.++
T Consensus 1 mk~vlItGas-g~iG~~l-----a~~l~~~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRAT-----ALLFAAEGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHH-----HHHHHHCCCeEEEE
Confidence 7889999987 6777654 45566789998876
No 416
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=28.75 E-value=61 Score=31.41 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++|||| -+|||+ ++.+.|.++|++|...
T Consensus 11 k~~lItG~-~~gIG~-----a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 11 KVAVVTGC-DTGLGQ-----GMALGLAEAGCDIVGI 40 (253)
T ss_pred CEEEEECC-CchHHH-----HHHHHHHHCCCEEEEe
Confidence 78999998 466665 5667777889988653
No 417
>PRK07677 short chain dehydrogenase; Provisional
Probab=28.65 E-value=68 Score=30.95 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|.++|||| -+|||+. +.+.|.++|++|.+.=.
T Consensus 2 k~~lItG~-s~giG~~-----ia~~l~~~G~~Vi~~~r 33 (252)
T PRK07677 2 KVVIITGG-SSGMGKA-----MAKRFAEEGANVVITGR 33 (252)
T ss_pred CEEEEeCC-CChHHHH-----HHHHHHHCCCEEEEEeC
Confidence 67899999 6777765 45666778998876533
No 418
>PRK08278 short chain dehydrogenase; Provisional
Probab=28.48 E-value=61 Score=32.01 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++|||| -+|||+. +.+.|.++|++|.+.
T Consensus 7 k~vlItGa-s~gIG~~-----ia~~l~~~G~~V~~~ 36 (273)
T PRK08278 7 KTLFITGA-SRGIGLA-----IALRAARDGANIVIA 36 (273)
T ss_pred CEEEEECC-CchHHHH-----HHHHHHHCCCEEEEE
Confidence 67999999 4677665 456677889888765
No 419
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.47 E-value=1.2e+02 Score=31.16 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCCCCCchhHHHHHHHHHHc-CCCEEeehH-H
Q 010866 362 GADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 400 (498)
Q Consensus 362 ~~DGIilpGG~g~~~~~g~i~~i~~a~e~-~iPiLGICl-G 400 (498)
++|.++.-||=|. .+.+++.+... ++|++||=+ |
T Consensus 39 ~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 39 NANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 4688999997552 45566655443 789999988 6
No 420
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=28.44 E-value=64 Score=31.36 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=23.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|-++|||| -||||+. +.+.|.++|++|.+.-
T Consensus 7 k~vlVtGa-s~gIG~~-----ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 7 QVALITGG-GSGIGRA-----LVERFLAEGARVAVLE 37 (263)
T ss_pred CEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEe
Confidence 68999998 4677654 5566778899987754
No 421
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=28.31 E-value=50 Score=35.15 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=54.8
Q ss_pred eeeeeecC--CCccccCCchhhHHHhhcCCCcccEEE-----------------EecCCCCCcchhcccCccCCCCCCCe
Q 010866 181 SLVPVLNV--VGEQKTKPTQHSVRGLRGQGLTPNILA-----------------CRSTVALDDNVKGKLSQFCHVPEQNI 241 (498)
Q Consensus 181 t~vp~~~~--~~e~KtKptQhsvk~Lrs~GI~pd~lV-----------------~Rs~~~l~s~~r~KisLf~~v~~~~V 241 (498)
++-||... +-.-|.|--||++.+|.+.-..|+++= |..--|.|++|++|.. +|.-++-
T Consensus 114 ~~~~~~ee~ls~~k~Rk~~~~~~~qLK~~vpyp~I~Ew~D~~~~dP~~l~~~K~~~N~VPVPrHW~sk~~---ylsg~~~ 190 (429)
T COG5182 114 RMKPYREESLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNGVPVPRHWRSKSR---YLSGHGY 190 (429)
T ss_pred ccCccchhhhHHHHHHHHhhhhHHHHhccCCccceeeeecCCCCChhhhhhhccCCCCCCCchhhhhhhh---ccccccc
Confidence 44555542 233467888999999999988888763 3345589999999864 4444433
Q ss_pred eecCCCCcc-chhhHHHHHhhhHHH
Q 010866 242 ITLYDVPNI-WHIPLLLRDQKAHEA 265 (498)
Q Consensus 242 i~i~dVdTr-Y~lpl~LreqG~~~~ 265 (498)
..-| |++|.+++.-|+.+.
T Consensus 191 -----~~~r~felP~~I~~TgI~qm 210 (429)
T COG5182 191 -----HKPRPFELPRHIIGTGIPQM 210 (429)
T ss_pred -----CCCCcccchHHHhhcChHHH
Confidence 4455 999999999988654
No 422
>PHA02754 hypothetical protein; Provisional
Probab=28.27 E-value=51 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.004 Sum_probs=21.9
Q ss_pred hHHHHHHHhhhhcCCCCEEEEEEeeeeee
Q 010866 158 PFIEALGQFSYRVGPGNFCLIHVSLVPVL 186 (498)
Q Consensus 158 pf~ea~rq~~~~~g~~n~~~ih~t~vp~~ 186 (498)
-|-||+||++..+. +.-+|||---+-|.
T Consensus 15 ~Fke~MRelkD~LS-e~GiYi~RIkai~~ 42 (67)
T PHA02754 15 DFKEAMRELKDILS-EAGIYIDRIKAITT 42 (67)
T ss_pred HHHHHHHHHHHHHh-hCceEEEEEEEEEe
Confidence 58999999999886 66789986555544
No 423
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=28.13 E-value=3.3e+02 Score=28.02 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHcCCCEEeeh
Q 010866 379 GKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 379 g~i~~i~~a~e~~iPiLGIC 398 (498)
....++++|...++|+.+||
T Consensus 167 ~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 167 KEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred HhHHHHHHHHHcCCCEEEEe
Confidence 35678999999999999999
No 424
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=27.94 E-value=74 Score=34.33 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=30.2
Q ss_pred EEEEEeCC----------ccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGG----------VVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGg----------v~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|-++|||| .+|--.-|-+...|.+-|..+|++|+.+-
T Consensus 186 ~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 186 KRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred ceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 67899999 45666667788889999999999998763
No 425
>PRK06057 short chain dehydrogenase; Provisional
Probab=27.84 E-value=68 Score=30.99 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=22.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-|+||||- ++||+- +.+.|.++|++|.++
T Consensus 8 ~~vlItGas-ggIG~~-----~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 8 RVAVITGGG-SGIGLA-----TARRLAAEGATVVVG 37 (255)
T ss_pred CEEEEECCC-chHHHH-----HHHHHHHcCCEEEEE
Confidence 678999994 666654 446777889998875
No 426
>PRK06125 short chain dehydrogenase; Provisional
Probab=27.82 E-value=69 Score=31.02 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=23.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|.++|||| -+|||+.++ ..|.++|++|.+.=.
T Consensus 8 k~vlItG~-~~giG~~ia-----~~l~~~G~~V~~~~r 39 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAA-----EAFAAEGCHLHLVAR 39 (259)
T ss_pred CEEEEeCC-CchHHHHHH-----HHHHHcCCEEEEEeC
Confidence 78999998 588887665 445668988877533
No 427
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=27.74 E-value=86 Score=26.61 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=29.3
Q ss_pred EEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcC
Q 010866 299 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG 370 (498)
Q Consensus 299 ~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpG 370 (498)
|||+=. ...+|.++|+..|+++.-. + . +..+..+|+++++|
T Consensus 3 kIAVE~-------~Ls~v~~~L~~~GyeVv~l--------~---~-------------~~~~~~~daiVvtG 43 (80)
T PF03698_consen 3 KIAVEE-------GLSNVKEALREKGYEVVDL--------E---N-------------EQDLQNVDAIVVTG 43 (80)
T ss_pred eEEecC-------CchHHHHHHHHCCCEEEec--------C---C-------------ccccCCcCEEEEEC
Confidence 577633 3458999999999987532 1 1 03477899999999
No 428
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=27.71 E-value=2.5e+02 Score=26.19 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=19.2
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++|||++.+.... ... ++.+.+.++|+..+
T Consensus 54 ~~~d~iii~~~~~~-----~~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 54 RRVDGIILAPSRLD-----DEL-LEELAALGIPVVLV 84 (264)
T ss_pred cCcCEEEEecCCcc-----hHH-HHHHHHcCCCEEEe
Confidence 36888888764321 112 66667778887665
No 429
>PRK07413 hypothetical protein; Validated
Probab=27.62 E-value=52 Score=35.54 Aligned_cols=30 Identities=40% Similarity=0.756 Sum_probs=0.0
Q ss_pred ccCCcchHHHHHHHHHHHHHCCC--------eeEEeee
Q 010866 10 VVSGLGKGVTASSIGVLLKACGL--------RVTCIKI 39 (498)
Q Consensus 10 v~S~lGkGi~~as~g~ll~~~g~--------~v~~~K~ 39 (498)
|.-|=|||-|+|++|..|++.|. ||.++.|
T Consensus 24 VytG~GKGKTTAAlGlalRA~G~G~~~~~~~rV~ivQF 61 (382)
T PRK07413 24 VYDGEGKGKSQAALGVVLRTIGLGICEKRQTRVLLLRF 61 (382)
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCCcCCCCeEEEEEE
No 430
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=27.60 E-value=85 Score=29.76 Aligned_cols=30 Identities=40% Similarity=0.677 Sum_probs=22.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
||.++|||| -++||.. +.+.|-++|++|.+
T Consensus 1 ~~~~lItGa-~g~iG~~-----l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRA-----TALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 688999999 4666654 55666678998865
No 431
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.51 E-value=87 Score=29.43 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=21.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
+|.|+|||| -++ +.+++...|.++|++|.+
T Consensus 6 ~~~vlItGa-sg~-----iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGA-ARG-----LGRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCC-Cch-----HHHHHHHHHHHCCCeEEE
Confidence 468999998 344 445666778889998755
No 432
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=27.47 E-value=3.2e+02 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.2
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++||||+.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET----GWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc----cchHHHHHHHHCCCCEEEE
Confidence 46999999763211 1124556777788888665
No 433
>PRK07023 short chain dehydrogenase; Provisional
Probab=27.38 E-value=84 Score=30.04 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=23.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|+-++|||| -+|||+- +.+.|.++|++|.+.=
T Consensus 1 ~~~vlItGa-sggiG~~-----ia~~l~~~G~~v~~~~ 32 (243)
T PRK07023 1 AVRAIVTGH-SRGLGAA-----LAEQLLQPGIAVLGVA 32 (243)
T ss_pred CceEEEecC-CcchHHH-----HHHHHHhCCCEEEEEe
Confidence 456899998 5677654 4556667899988763
No 434
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=27.31 E-value=1.4e+02 Score=30.33 Aligned_cols=91 Identities=14% Similarity=0.073 Sum_probs=43.2
Q ss_pred CeEEEEEcccCCccchHHHHHHHHHHc--CCcceeeeEEEEecCC-Cccc-cccCCChhhhHHHHHhccCCCEEEEcCCC
Q 010866 297 PVRIAMVGKYTGLSDAYLSILKALLHA--SVDLRKKLVIDWIPAC-DLED-ATEKENPDAYKAAWKLLKGADGILVPGGF 372 (498)
Q Consensus 297 ~v~IaIVgkY~~l~day~SI~~AL~~a--G~~~~v~v~i~~I~se-~l~~-~~~~~~p~~y~~~~~~l~~~DGIilpGG~ 372 (498)
.+|||++| +|..+ ..+.++|... ++++. ..|-... ..+. ......+..|....+.+.++|.|+++-+.
T Consensus 6 ~irIGIIG-~G~IG---~~~a~~L~~~~~~~el~----aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~ 77 (271)
T PRK13302 6 ELRVAIAG-LGAIG---KAIAQALDRGLPGLTLS----AVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPA 77 (271)
T ss_pred eeEEEEEC-ccHHH---HHHHHHHHhcCCCeEEE----EEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCc
Confidence 47999999 87444 3456666653 33222 1221111 1000 00000011233333456779999998643
Q ss_pred CCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 373 GNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 373 g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
.. ..+.+..+++++++++-.+.|
T Consensus 78 ~~-----h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 78 SV-----LRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred HH-----HHHHHHHHHHcCCcEEEecch
Confidence 21 133344555566666654444
No 435
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=27.26 E-value=89 Score=33.20 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=33.6
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHH-HCCCeeEEeeeccccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLK-ACGLRVTCIKIDPYLN 44 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~-~~g~~v~~~K~DpYlN 44 (498)
+++|| ++|-||=..+..+...|. .+|++|.++-+|=++.
T Consensus 2 ~~l~G--l~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCG--LPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEEC--CCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 46666 689999999999998886 7999999999998874
No 436
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=27.21 E-value=1.4e+02 Score=30.75 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=53.0
Q ss_pred HHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhccCCCEEEEcCCCCCC-----CchhHHHHHHHHHHcC
Q 010866 317 LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHR 391 (498)
Q Consensus 317 ~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l~~~DGIilpGG~g~~-----~~~g~i~~i~~a~e~~ 391 (498)
.+.++..|++-.-.+++.|-+--+. +.....+.+|+||++.||--.+ ......++++.-..++
T Consensus 73 ~rife~~gv~~v~ildir~R~~a~~------------s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G 140 (293)
T COG4242 73 IRIFEMMGVEEVQILDIRNREDASS------------SDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRG 140 (293)
T ss_pred hhHHHHhccceeEEEeeecccccch------------HHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcC
Confidence 4466777887666667777532111 1233567899999999985544 1245667787777788
Q ss_pred CCEEeehHHHHHHH
Q 010866 392 IPYLGICLGMQVAV 405 (498)
Q Consensus 392 iPiLGIClGmQll~ 405 (498)
+-+-|.--|.-+|.
T Consensus 141 ~avgGTSAGAavM~ 154 (293)
T COG4242 141 IAVGGTSAGAAVMS 154 (293)
T ss_pred ceecccccchhhcC
Confidence 99999999888876
No 437
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=27.11 E-value=76 Score=33.99 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=27.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.|=|||= =|||-|++=|..+|++.|++|-..
T Consensus 50 ~~I~VtGT----NGKgSt~~~l~~iL~~~G~~vG~~ 81 (416)
T PRK10846 50 FVFTVAGT----NGKGTTCRTLESILMAAGYRVGVY 81 (416)
T ss_pred CEEEEECC----CChHHHHHHHHHHHHHcCCCceEE
Confidence 45667774 499999999999999999999665
No 438
>PRK09271 flavodoxin; Provisional
Probab=27.02 E-value=1.9e+02 Score=26.66 Aligned_cols=42 Identities=12% Similarity=-0.089 Sum_probs=22.1
Q ss_pred hccCCCEEEEcC---CCCC-C-CchhHHHHHHHHHHcCCCEEeehHH
Q 010866 359 LLKGADGILVPG---GFGN-R-GVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 359 ~l~~~DGIilpG---G~g~-~-~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
.+.++|+|+|.- |.|. | .+...++.+.....+++++.-++.|
T Consensus 48 ~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 48 DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 355789998876 3343 3 2344444454433345555555543
No 439
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=27.02 E-value=96 Score=32.02 Aligned_cols=92 Identities=28% Similarity=0.357 Sum_probs=62.8
Q ss_pred CccccCCCCccccccCCCCCCCCcccchHh--hHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhccc-C----CCC
Q 010866 64 GGEVDLDLGNYERFMDIKLTRDNNITTGKI--YQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIP-V----DGK 136 (498)
Q Consensus 64 G~E~DlDlG~YeRf~~~~l~~~~n~t~G~i--y~~vi~kER~g~ylG~tvQviPHit~ei~~~i~~~~~~p-v----d~~ 136 (498)
|.+++| |.--|.|=|.-+++|..+++|+. -.+.=..+|+|+ +.++|+|.++.+- | + ++.
T Consensus 51 gv~V~l-l~~~~~~Pd~VFt~D~~~v~~~~avl~r~~~p~R~gE------------~~~~~~~~~~lgi-~i~~~~~~~~ 116 (267)
T COG1834 51 GVEVHL-LPPIEGLPDQVFTRDPGLVTGEGAVLARMGAPERRGE------------EEAIKETLESLGI-PIYPRVEAGV 116 (267)
T ss_pred CCEEEE-cCcccCCCcceEeccceeEecccEEEeccCChhhccC------------HHHHHHHHHHcCC-cccccccCCC
Confidence 444444 44667888888899999998864 345557899997 6789999999873 3 2 222
Q ss_pred CCC-ccEEEEeeCccc--cccCcchHHHHHHHhhhhcC
Q 010866 137 EGP-VDVCVIELGGTI--GDIESMPFIEALGQFSYRVG 171 (498)
Q Consensus 137 ~~~-~dv~i~EiGGTv--GdiEs~pf~ea~rq~~~~~g 171 (498)
.++ =|+++.+ |.|| |.= .--=+|+++||+.-++
T Consensus 117 ~eG~GD~l~~~-~~~v~iG~s-~RTn~egi~~l~~~L~ 152 (267)
T COG1834 117 FEGAGDVLMDG-GDTVYIGYS-FRTNLEGIEQLQAWLE 152 (267)
T ss_pred ccccccEEEeC-CcEEEEEec-cccchHHHHHHHHHhc
Confidence 334 5888887 6665 221 1223588888888776
No 440
>PRK12743 oxidoreductase; Provisional
Probab=27.01 E-value=74 Score=30.82 Aligned_cols=30 Identities=30% Similarity=0.488 Sum_probs=21.7
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
+|-++|||| -|+||.. +.+.|-++|++|.+
T Consensus 2 ~k~vlItGa-s~giG~~-----~a~~l~~~G~~V~~ 31 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKA-----CALLLAQQGFDIGI 31 (256)
T ss_pred CCEEEEECC-CchHHHH-----HHHHHHHCCCEEEE
Confidence 367999998 4888854 55666677887654
No 441
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.01 E-value=75 Score=31.22 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=23.0
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv-~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|-++||||- -+|||+.+ .+.|-+.|++|.+
T Consensus 7 k~vlItGas~~~GIG~a~-----a~~l~~~G~~v~~ 37 (260)
T PRK06997 7 KRILITGLLSNRSIAYGI-----AKACKREGAELAF 37 (260)
T ss_pred cEEEEeCCCCCCcHHHHH-----HHHHHHCCCeEEE
Confidence 679999984 68999854 4556778998864
No 442
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=27.00 E-value=53 Score=34.03 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.4
Q ss_pred ccccCcchHHHHHHHhhhhcCCC
Q 010866 151 IGDIESMPFIEALGQFSYRVGPG 173 (498)
Q Consensus 151 vGdiEs~pf~ea~rq~~~~~g~~ 173 (498)
|=||-|.-|+..+.|...++...
T Consensus 57 ~iDiRs~~~~~~l~~~l~~l~~~ 79 (286)
T COG1660 57 VIDVRSREFFGDLEEVLDELKDN 79 (286)
T ss_pred EEecccchhHHHHHHHHHHHHhc
Confidence 34899999999998888877644
No 443
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=26.89 E-value=68 Score=32.52 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=22.0
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++||||- +|||.-+ .+.|..+|++|.+.
T Consensus 7 k~vlVTGas-~gIG~~~-----a~~L~~~G~~V~~~ 36 (322)
T PRK07453 7 GTVIITGAS-SGVGLYA-----AKALAKRGWHVIMA 36 (322)
T ss_pred CEEEEEcCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 679999985 7777654 45566778887654
No 444
>PRK07478 short chain dehydrogenase; Provisional
Probab=26.88 E-value=73 Score=30.72 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- +|||+.+ .+.|-++|++|.+.
T Consensus 7 k~~lItGas-~giG~~i-----a~~l~~~G~~v~~~ 36 (254)
T PRK07478 7 KVAIITGAS-SGIGRAA-----AKLFAREGAKVVVG 36 (254)
T ss_pred CEEEEeCCC-ChHHHHH-----HHHHHHCCCEEEEE
Confidence 689999986 7888765 45566789887654
No 445
>COG2403 Predicted GTPase [General function prediction only]
Probab=26.75 E-value=65 Score=35.04 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.6
Q ss_pred CccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 9 GVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 9 gv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|+=-+.||--+++-++++|++|||+|.++..
T Consensus 133 atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 133 ATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred EeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 3556889999999999999999999999976
No 446
>PRK06128 oxidoreductase; Provisional
Probab=26.40 E-value=80 Score=31.68 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=22.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++|||| -+|||+. +.+.|.++|++|.+.
T Consensus 56 k~vlITGa-s~gIG~~-----~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGA-DSGIGRA-----TAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecC-CCcHHHH-----HHHHHHHcCCEEEEE
Confidence 77999998 5788865 456677789988654
No 447
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=26.30 E-value=82 Score=32.16 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=24.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|-|+||||- |-+.+.+...|.++|++|..+-
T Consensus 1 ~~vlVTGat------GfIG~~l~~~L~~~G~~V~~~~ 31 (343)
T TIGR01472 1 KIALITGIT------GQDGSYLAEFLLEKGYEVHGLI 31 (343)
T ss_pred CeEEEEcCC------CcHHHHHHHHHHHCCCEEEEEe
Confidence 568999985 6666777788888999988754
No 448
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=26.30 E-value=3.7e+02 Score=27.51 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHh--ccCCCEEEEcC-CCCCCCchhHHHHHHHHHHc
Q 010866 314 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPG-GFGNRGVQGKILAAKYAREH 390 (498)
Q Consensus 314 ~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~--l~~~DGIilpG-G~g~~~~~g~i~~i~~a~e~ 390 (498)
..+.+.-+..+.++.+.-++..-.+..+...++ + ..+++. -..+|||+++| ..|.+.....+..+|.+..
T Consensus 128 ~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~----~--~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~- 200 (254)
T PF03437_consen 128 GELLRYRKRLGADVKILADVHVKHSSPLATRDL----E--EAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP- 200 (254)
T ss_pred HHHHHHHHHcCCCeEEEeeechhhcccCCCCCH----H--HHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-
Confidence 456666666677765554444434433322111 1 112222 24699999999 4566544455666666654
Q ss_pred CCCEE
Q 010866 391 RIPYL 395 (498)
Q Consensus 391 ~iPiL 395 (498)
+|+|
T Consensus 201 -~PVl 204 (254)
T PF03437_consen 201 -VPVL 204 (254)
T ss_pred -CCEE
Confidence 8998
No 449
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=26.25 E-value=1.4e+02 Score=27.22 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=29.1
Q ss_pred CCccEEEEeeCccccccCc-----chHHHHHHHhhhhcCCCCEEEEEEeeeee
Q 010866 138 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVPV 185 (498)
Q Consensus 138 ~~~dv~i~EiGGTvGdiEs-----~pf~ea~rq~~~~~g~~n~~~ih~t~vp~ 185 (498)
.+||+|||++|+ .|+.. .-|.+.+++|-.++...++-.|-++.-|.
T Consensus 66 ~~~d~vii~~G~--ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGG--NDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEeccc--cccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 489999999995 35532 23677777777766544444444554443
No 450
>PLN02686 cinnamoyl-CoA reductase
Probab=26.21 E-value=95 Score=32.51 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=24.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
+|-|+||||. |-+.+.+-+.|..+|++|.+.
T Consensus 53 ~k~VLVTGat------GfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 53 ARLVCVTGGV------SFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred CCEEEEECCc------hHHHHHHHHHHHHCCCEEEEE
Confidence 3779999986 667777788888899988754
No 451
>PRK07062 short chain dehydrogenase; Provisional
Probab=26.18 E-value=78 Score=30.72 Aligned_cols=33 Identities=36% Similarity=0.476 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.++||||- ||||+- +.+.|.++|++|.+.-.+
T Consensus 9 k~~lItGas-~giG~~-----ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGS-SGIGLA-----TVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCC-chHHHH-----HHHHHHHCCCeEEEEeCC
Confidence 679999975 677764 556677889998776444
No 452
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=26.14 E-value=3.4e+02 Score=28.77 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=60.1
Q ss_pred cccCCchhhHHHhhcCCCcccEEEEecCCCCCcchhcccCccCCCCCCCeeecCCCCccchhhHHHHHhhhHHHHHHhcC
Q 010866 192 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN 271 (498)
Q Consensus 192 ~KtKptQhsvk~Lrs~GI~pd~lV~Rs~~~l~s~~r~KisLf~~v~~~~Vi~i~dVdTrY~lpl~LreqG~~~~il~~l~ 271 (498)
.|=---.-+++.|.+.| +|++|+|....-....-++.+ .+. .||+.=|=..- +=+
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~egaa~~~a~~~---~~~--pvINaGDG~~q-HPT----------------- 140 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEGAARLLAEFS---GVN--PVINAGDGSHQ-HPT----------------- 140 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCccccHHHHHHHhc---CCC--ceEECCCCCCC-Ccc-----------------
Confidence 44446677899998888 899999987654444333333 332 36665443322 111
Q ss_pred CCCCCChhhHHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHHHHHcCCcceee
Q 010866 272 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKK 330 (498)
Q Consensus 272 l~~~~~~~~l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~ 330 (498)
+..++-| .+.+.... -+..+||++|+-- .+..-+|..++|...|+++.+.
T Consensus 141 ------Q~LLDl~-TI~~~~G~-~~gl~iaivGDlk-hsRva~S~~~~L~~~ga~v~lv 190 (316)
T COG0540 141 ------QALLDLY-TIREEFGR-LDGLKIAIVGDLK-HSRVAHSNIQALKRFGAEVYLV 190 (316)
T ss_pred ------HHHHHHH-HHHHHhCC-cCCcEEEEEcccc-chHHHHHHHHHHHHcCCEEEEE
Confidence 1111111 01111111 2347999999653 3346789999999999666554
No 453
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.11 E-value=55 Score=33.63 Aligned_cols=35 Identities=34% Similarity=0.441 Sum_probs=27.4
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehHH
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 400 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIClG 400 (498)
..+|.++.-||=|. .+.+++.+...++|+|||=.|
T Consensus 41 ~~~d~vi~iGGDGT-----~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 41 QRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCC
Confidence 46899999998552 456677776778999999877
No 454
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=26.10 E-value=60 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHHHHHCCCeeEEeeeccc
Q 010866 14 LGKGVTASSIGVLLKACGLRVTCIKIDPY 42 (498)
Q Consensus 14 lGkGi~~as~g~ll~~~g~~v~~~K~DpY 42 (498)
+|=||+.+|++.-|..+|++|+++-=+..
T Consensus 5 IGaGi~G~~~A~~La~~G~~V~l~e~~~~ 33 (358)
T PF01266_consen 5 IGAGIAGLSTAYELARRGHSVTLLERGDI 33 (358)
T ss_dssp ECTSHHHHHHHHHHHHTTSEEEEEESSST
T ss_pred ECcCHHHHHHHHHHHHCCCeEEEEeeccc
Confidence 35589999999999999999999866533
No 455
>TIGR01419 nitro_reg_IIA PTS IIA-like nitrogen-regulatory protein PtsN. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum.
Probab=25.94 E-value=26 Score=31.47 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=25.3
Q ss_pred chHhhHHHHhhhhcCCC-CCCeeEEcccchHHH
Q 010866 90 TGKIYQSVIDKERKGDY-LGKTVQVVPHITDEI 121 (498)
Q Consensus 90 ~G~iy~~vi~kER~g~y-lG~tvQviPHit~ei 121 (498)
.-.+++.+++||+.|-+ +|..| .+||...+-
T Consensus 39 ~~~~~~~i~~RE~~~~t~i~~~i-AiPH~~~~~ 70 (145)
T TIGR01419 39 EQDVFECLLAREKLGSTGVGNGI-AIPHGRLSG 70 (145)
T ss_pred HHHHHHHHHHHhcccCCCCCCce-eccccCccc
Confidence 44689999999999985 57778 999987663
No 456
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=25.93 E-value=90 Score=29.83 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=30.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeeccccc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLN 44 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (498)
..|.++| .||-||-..+..|..+|+. .++..+-.|.|+.
T Consensus 7 ~vi~I~G--~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~~~ 45 (207)
T TIGR00235 7 IIIGIGG--GSGSGKTTVARKIYEQLGK--LEIVIISQDNYYK 45 (207)
T ss_pred EEEEEEC--CCCCCHHHHHHHHHHHhcc--cCCeEeccccccc
Confidence 4677888 6899999999999998875 4567777777753
No 457
>PRK10461 thiamine biosynthesis lipoprotein ApbE; Provisional
Probab=25.87 E-value=55 Score=34.69 Aligned_cols=79 Identities=22% Similarity=0.455 Sum_probs=48.0
Q ss_pred cCCcchHHHHHHHHHHHHHCCCeeEEeeecccccC-----C-----CCCCCcccc-c---eEEEccCCc-cccCCCCccc
Q 010866 11 VSGLGKGVTASSIGVLLKACGLRVTCIKIDPYLNT-----D-----AGTMSPFEH-G---EVFVLDDGG-EVDLDLGNYE 75 (498)
Q Consensus 11 ~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYlNv-----d-----~gtmsP~~H-g---EvfV~~dG~-E~DlDlG~Ye 75 (498)
+.|++||-++--+..+|++.|.+=.++-+=-=+-+ | -|-=+|+.. + .++-+.|++ -| =|+||
T Consensus 183 LggIaKGyavD~a~~~L~~~Gv~~~lV~~GGdi~~~G~~~~g~~W~VgI~~P~~~~~~~~~~~~l~~~avaT---SG~Ye 259 (350)
T PRK10461 183 LSTVGEGYAADHLARLMEQEGISRYLVSVGGALSSRGMNGEGQPWRVAIQKPTDKENAVQAVVDINGHGIST---SGSYR 259 (350)
T ss_pred cchhHHHHHHHHHHHHHHHCCCCEEEEEcCCcEEEECCCCCCCCCEEEEcCCCCCCCCceEEEEeCCCEEEe---cCcce
Confidence 57899999999999999999876555544221111 0 122345421 1 123334443 22 58999
Q ss_pred cccCCCCCCCCcccchHhhHHHHhhh
Q 010866 76 RFMDIKLTRDNNITTGKIYQSVIDKE 101 (498)
Q Consensus 76 Rf~~~~l~~~~n~t~G~iy~~vi~kE 101 (498)
||...+ ||-|+.+|+--
T Consensus 260 r~~~~~---------g~ry~HIidP~ 276 (350)
T PRK10461 260 NYYELD---------GKRLSHVIDPQ 276 (350)
T ss_pred eEEEeC---------CeEEEEeecCC
Confidence 997543 67777777653
No 458
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=25.84 E-value=1.1e+02 Score=28.51 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=39.9
Q ss_pred EEEEcCCCCCCC---chhH-HHHHHHHHHcCCCEEeehHH--------HHHHHHHhcchhcccCCCCCCcc
Q 010866 365 GILVPGGFGNRG---VQGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTEF 423 (498)
Q Consensus 365 GIilpGG~g~~~---~~g~-i~~i~~a~e~~iPiLGIClG--------mQll~va~g~~v~~lk~~~s~E~ 423 (498)
-|+++-|....+ .... .++++.+++.+++++.|+.| |+-++-+-||+.+.+.+.++.+|
T Consensus 102 ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~ 172 (178)
T cd01451 102 IVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAI 172 (178)
T ss_pred EEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHH
Confidence 566676654422 1122 56677888899999999986 56777777887777666655543
No 459
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=25.73 E-value=73 Score=32.45 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCC-CeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACG-LRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g-~~v~~ 36 (498)
|-++||||- ||||+.++ +.|-++| ++|.+
T Consensus 4 k~vlITGas-~GIG~aia-----~~L~~~G~~~V~l 33 (314)
T TIGR01289 4 PTVIITGAS-SGLGLYAA-----KALAATGEWHVIM 33 (314)
T ss_pred CEEEEECCC-ChHHHHHH-----HHHHHcCCCEEEE
Confidence 678999987 78887654 4466678 88754
No 460
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=25.71 E-value=1.5e+02 Score=28.97 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=34.8
Q ss_pred chHhhHHHHhhhhcCCCCCC--eeEEcccchHHHHHHHHHHhcccCCCCCCCccEEEEeeCccc
Q 010866 90 TGKIYQSVIDKERKGDYLGK--TVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 151 (498)
Q Consensus 90 ~G~iy~~vi~kER~g~ylG~--tvQviPHit~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTv 151 (498)
+|..-.+.+++ .| +.|- ...+||.=-++|++.|++..+ ..++|++|+= |||-
T Consensus 24 ng~~L~~~L~~--~G-~~g~~v~~~iVpDd~~~I~~aL~~a~~------~~~~DlIITT-GGtg 77 (193)
T PRK09417 24 GIPALEEWLAS--AL-TSPFEIETRLIPDEQDLIEQTLIELVD------EMGCDLVLTT-GGTG 77 (193)
T ss_pred hHHHHHHHHHH--cC-CCCceEEEEECCCCHHHHHHHHHHHhh------cCCCCEEEEC-CCCC
Confidence 45455555543 33 2232 227899999999999998862 3478998886 9884
No 461
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.68 E-value=4.7e+02 Score=24.96 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=20.6
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++||+|+.+... + ...+.++.+.+.++|+.-+
T Consensus 55 ~~vdgiii~~~~~-~---~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 55 QGVDAIIVVPVDT-A---ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred cCCCEEEEecCch-h---hhHHHHHHHHHCCCeEEEe
Confidence 3789999865321 1 1234566677788898653
No 462
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=25.66 E-value=2.9e+02 Score=26.35 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=24.3
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeeh
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIC 398 (498)
.++|||++..... ......++.+.+.++|+.-+=
T Consensus 54 ~~~d~Iiv~~~~~----~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 54 QGVDGIIVSPVDP----DSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp TTESEEEEESSST----TTTHHHHHHHHHTTSEEEEES
T ss_pred hcCCEEEecCCCH----HHHHHHHHHHhhcCceEEEEe
Confidence 5799999876432 123467788888999998753
No 463
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=25.60 E-value=3.5e+02 Score=25.10 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 362 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 362 ~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
++||+|+++.... . .. .++.+.+.++|++.+
T Consensus 55 ~~d~ii~~~~~~~-~---~~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 55 GVDGIIIAPSDLT-A---PT-IVKLARKAGIPVVLV 85 (264)
T ss_pred CCCEEEEecCCCc-c---hh-HHHHhhhcCCCEEEe
Confidence 5777777653211 1 11 345555566776554
No 464
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=25.52 E-value=95 Score=29.58 Aligned_cols=32 Identities=41% Similarity=0.528 Sum_probs=23.2
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
+|-++||||- ++|| +++.+.|-++|++|.+.=
T Consensus 1 ~~~vlItGa~-g~lG-----~~l~~~l~~~g~~v~~~~ 32 (255)
T TIGR01963 1 GKTALVTGAA-SGIG-----LAIALALAAAGANVVVND 32 (255)
T ss_pred CCEEEEcCCc-chHH-----HHHHHHHHHCCCEEEEEe
Confidence 4679999975 5555 566677778898877753
No 465
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=25.48 E-value=91 Score=33.83 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.7
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|+|||| -|-+.+.|-..|.++|++|..+-
T Consensus 123 ILVTGa------tGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 123 IVVTGG------AGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred EEEECC------ccHHHHHHHHHHHHCCCEEEEEe
Confidence 899996 48999999999999999998764
No 466
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.48 E-value=85 Score=30.79 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~-S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||-- +|||+.++ +.|-.+|++|.+.
T Consensus 8 k~~lItGa~~s~GIG~aia-----~~la~~G~~v~~~ 39 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIA-----RSLHNAGAKLVFT 39 (257)
T ss_pred CEEEEECCCCCCCHHHHHH-----HHHHHCCCEEEEe
Confidence 6899999985 89997654 5566789988553
No 467
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=25.45 E-value=93 Score=31.34 Aligned_cols=30 Identities=43% Similarity=0.386 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-||||||- |-+.+.+.+.|.++|++|...
T Consensus 6 ~~vlVTGat------G~iG~~l~~~L~~~g~~V~~~ 35 (322)
T PLN02986 6 KLVCVTGAS------GYIASWIVKLLLLRGYTVKAT 35 (322)
T ss_pred CEEEEECCC------cHHHHHHHHHHHHCCCEEEEE
Confidence 679999974 777788888888899998754
No 468
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.39 E-value=90 Score=29.55 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=23.4
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|-++|||| -++||+-+ .+.|.++|++|...-.
T Consensus 6 k~~lVtGa-s~~iG~~i-----a~~l~~~G~~v~~~~r 37 (235)
T PRK06550 6 KTVLITGA-ASGIGLAQ-----ARAFLAQGAQVYGVDK 37 (235)
T ss_pred CEEEEcCC-CchHHHHH-----HHHHHHCCCEEEEEeC
Confidence 67899988 46777654 4566788999887643
No 469
>PLN02778 3,5-epimerase/4-reductase
Probab=25.26 E-value=97 Score=31.43 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.5
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
=|+|||| -|-..+.|-+.|.++|++|+.
T Consensus 11 kiLVtG~------tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 11 KFLIYGK------TGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred eEEEECC------CCHHHHHHHHHHHhCCCEEEE
Confidence 3899996 599999999999999999874
No 470
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=25.20 E-value=1.4e+02 Score=25.96 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=30.8
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecccc
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDPYL 43 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~DpYl 43 (498)
+.|+|. +|.||-..+..+...+...|.+|..+-.+...
T Consensus 2 ~~i~G~--~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGP--TGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 567887 89999999999999998888888666555443
No 471
>PRK06196 oxidoreductase; Provisional
Probab=25.18 E-value=78 Score=32.03 Aligned_cols=31 Identities=42% Similarity=0.514 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|.|+||||- +|||+-++ +.|.++|++|.+.=
T Consensus 27 k~vlITGas-ggIG~~~a-----~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 27 KTAIVTGGY-SGLGLETT-----RALAQAGAHVIVPA 57 (315)
T ss_pred CEEEEeCCC-chHHHHHH-----HHHHHCCCEEEEEe
Confidence 679999986 78876554 45667899887753
No 472
>PRK12747 short chain dehydrogenase; Provisional
Probab=25.18 E-value=79 Score=30.41 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=21.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEE
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTC 36 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~ 36 (498)
|-++||||- ||||.. +.+.|.+.|++|.+
T Consensus 5 k~~lItGas-~gIG~~-----ia~~l~~~G~~v~~ 33 (252)
T PRK12747 5 KVALVTGAS-RGIGRA-----IAKRLANDGALVAI 33 (252)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCeEEE
Confidence 789999975 677654 45667788998765
No 473
>PRK02496 adk adenylate kinase; Provisional
Probab=25.06 E-value=84 Score=29.21 Aligned_cols=25 Identities=32% Similarity=0.496 Sum_probs=19.9
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll 27 (498)
|+-|+|+|+ +|-||+..|.-|...+
T Consensus 1 ~~~i~i~G~--pGsGKst~a~~la~~~ 25 (184)
T PRK02496 1 MTRLIFLGP--PGAGKGTQAVVLAEHL 25 (184)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHh
Confidence 566899998 8899988888777644
No 474
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=24.96 E-value=1e+02 Score=32.72 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHhccCCCEEEEcCCCCC----C--CchhHHHHHHHHHHcCCCEEeeh
Q 010866 354 KAAWKLLKGADGILVPGGFGN----R--GVQGKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 354 ~~~~~~l~~~DGIilpGG~g~----~--~~~g~i~~i~~a~e~~iPiLGIC 398 (498)
.++.+.++++|-|++.+|.-. | .+.+..+++++ ..-|+.+||
T Consensus 181 ~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~---~~ap~i~v~ 228 (323)
T COG0391 181 PEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRE---TVAPIVYVC 228 (323)
T ss_pred HHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHh---CCCCEEEec
Confidence 455677899999999543221 2 23555555554 678999999
No 475
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=24.87 E-value=1.1e+02 Score=34.85 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
||.|=|+|- |+-||-....-|=..|+.+||+|..+|=|.
T Consensus 10 ~~vi~ivG~--s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 10 IPLLGFCAY--SGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred ccEEEEEcC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 355667774 999999999999999999999999999755
No 476
>PRK06217 hypothetical protein; Validated
Probab=24.86 E-value=75 Score=29.75 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.0
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHH
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLL 27 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll 27 (498)
|+-|+|+| .||-||...|..|+..|
T Consensus 1 ~~~I~i~G--~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 1 MMRIHITG--ASGSGTTTLGAALAERL 25 (183)
T ss_pred CeEEEEEC--CCCCCHHHHHHHHHHHc
Confidence 56699999 68999999888888765
No 477
>PRK08862 short chain dehydrogenase; Provisional
Probab=24.79 E-value=84 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=22.9
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- +|||+. +.+.|..+|++|.+.
T Consensus 6 k~~lVtGas-~GIG~a-----ia~~la~~G~~V~~~ 35 (227)
T PRK08862 6 SIILITSAG-SVLGRT-----ISCHFARLGATLILC 35 (227)
T ss_pred eEEEEECCc-cHHHHH-----HHHHHHHCCCEEEEE
Confidence 789999986 588776 455677899998654
No 478
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=24.70 E-value=1e+02 Score=31.17 Aligned_cols=30 Identities=43% Similarity=0.540 Sum_probs=22.3
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|| |+||||. |-+.+.+.+.|.++|++|.++
T Consensus 1 m~-vlVtGat------G~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 1 MR-VLVTGGS------GYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred Ce-EEEECCC------ChHHHHHHHHHHHCCCeEEEE
Confidence 44 7899976 555666667777889999865
No 479
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=24.69 E-value=1.3e+02 Score=26.28 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=47.9
Q ss_pred chHhhHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCccEEEEeeCccccccCcc-------
Q 010866 90 TGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM------- 157 (498)
Q Consensus 90 ~G~iy~~vi~kER~g~ylG~tvQviPH-----it~ei~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdiEs~------- 157 (498)
++.-|...+.++ .+..+.|... -+.....++.+.... . ....||++++++|+ .|+-.-
T Consensus 15 ~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~-~--~~~~~d~vvi~~G~--ND~~~~~~~~~~~ 84 (179)
T PF13472_consen 15 NNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVLR-F--KDPKPDLVVISFGT--NDVLNGDENDTSP 84 (179)
T ss_dssp SCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCHH-H--CGTTCSEEEEE--H--HHHCTCTTCHHHH
T ss_pred CCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHhh-h--ccCCCCEEEEEccc--ccccccccccccH
Confidence 446777788775 3444444322 122233333332100 0 24689999999995 555442
Q ss_pred -hHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCC
Q 010866 158 -PFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVG 190 (498)
Q Consensus 158 -pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~ 190 (498)
-|.++++++...+.+.. -.+.+++.|+.....
T Consensus 85 ~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~~~ 117 (179)
T PF13472_consen 85 EQYEQNLRRIIEQLRPHG-PVILVSPPPRGPDPR 117 (179)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSSTT
T ss_pred HHHHHHHHHHHHhhcccC-cEEEecCCCcccccc
Confidence 27888888888776666 444445556664433
No 480
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=24.65 E-value=1e+02 Score=30.29 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=28.3
Q ss_pred EEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 4 VLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 4 i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
|+++| ++|-||-..|..|+..|...|++|..+-.
T Consensus 2 Ivl~G--~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTG--LPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEc--CCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 67888 57789999999999999999988866633
No 481
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=24.64 E-value=3.3e+02 Score=29.83 Aligned_cols=63 Identities=19% Similarity=0.347 Sum_probs=40.3
Q ss_pred ccEEEEe-eCccccccC-cchHHHHHHHhhhhcCCCCEEEEEEeeeeeecCCCccccCC--chhhHHHhhcCCCcccEEE
Q 010866 140 VDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP--TQHSVRGLRGQGLTPNILA 215 (498)
Q Consensus 140 ~dv~i~E-iGGTvGdiE-s~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~e~KtKp--tQhsvk~Lrs~GI~pd~lV 215 (498)
.=-+|+| |-|.-|-+. +--|++++|++..+.| +++|. .|..|== | -..-..+..|+.||+++
T Consensus 232 iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~g---iLlI~----------DEV~tGfGRt-G~~~a~e~~gv~PDiv~ 297 (464)
T PRK06938 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAG---IPLIV----------DEIQSGFGRT-GKMFAFEHAGIIPDVVV 297 (464)
T ss_pred eEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcC---CEEEE----------eccccCCCcC-cHHHHHHhcCCCCCEEE
Confidence 4457888 555556553 5789999999999976 66663 3433310 1 01122345799999987
Q ss_pred E
Q 010866 216 C 216 (498)
Q Consensus 216 ~ 216 (498)
+
T Consensus 298 ~ 298 (464)
T PRK06938 298 L 298 (464)
T ss_pred e
Confidence 7
No 482
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=24.62 E-value=4.7e+02 Score=24.47 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=18.1
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
.++||||+.+... ......++.+.+.++|+..+
T Consensus 54 ~~vdgvi~~~~~~----~~~~~~~~~l~~~~ip~V~~ 86 (267)
T cd01536 54 QGVDGIIISPVDS----AALTPALKKANAAGIPVVTV 86 (267)
T ss_pred cCCCEEEEeCCCc----hhHHHHHHHHHHCCCcEEEe
Confidence 3789999865321 11112445555666776543
No 483
>PRK07454 short chain dehydrogenase; Provisional
Probab=24.58 E-value=1.1e+02 Score=29.22 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=23.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKI 39 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~ 39 (498)
||-++|||| -+++|+. +.+.|-++|++|.+.=.
T Consensus 6 ~k~vlItG~-sg~iG~~-----la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 6 MPRALITGA-SSGIGKA-----TALAFAKAGWDLALVAR 38 (241)
T ss_pred CCEEEEeCC-CchHHHH-----HHHHHHHCCCEEEEEeC
Confidence 578999998 4666654 45566678988877644
No 484
>PRK08589 short chain dehydrogenase; Validated
Probab=24.58 E-value=82 Score=31.00 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=22.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||- +|||+ ++.+-|.++|++|.+.
T Consensus 7 k~vlItGas-~gIG~-----aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 7 KVAVITGAS-TGIGQ-----ASAIALAQEGAYVLAV 36 (272)
T ss_pred CEEEEECCC-chHHH-----HHHHHHHHCCCEEEEE
Confidence 679999985 67775 4455667789998764
No 485
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=24.57 E-value=1e+02 Score=29.73 Aligned_cols=28 Identities=39% Similarity=0.578 Sum_probs=21.6
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
|+-|.+|||.-| || |+++++|++.|+.|
T Consensus 1 m~~igitG~igs--GK----st~~~~l~~~g~~v 28 (200)
T PRK14734 1 MLRIGLTGGIGS--GK----STVADLLSSEGFLI 28 (200)
T ss_pred CeEEEEECCCCC--CH----HHHHHHHHHCCCeE
Confidence 678999999655 56 46778888888854
No 486
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=24.49 E-value=1.1e+02 Score=29.78 Aligned_cols=33 Identities=42% Similarity=0.538 Sum_probs=24.5
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeec
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKID 40 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~D 40 (498)
|.++||||- +|||+- +.+.|.++|++|.+.-.+
T Consensus 10 k~vlItG~s-~gIG~~-----la~~l~~~G~~v~~~~~~ 42 (266)
T PRK06171 10 KIIIVTGGS-SGIGLA-----IVKELLANGANVVNADIH 42 (266)
T ss_pred CEEEEeCCC-ChHHHH-----HHHHHHHCCCEEEEEeCC
Confidence 789999975 677754 445678899999876443
No 487
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=24.41 E-value=4.2e+02 Score=25.00 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=20.3
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEee
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 397 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGI 397 (498)
..+||||+.++... . .+.++.+.+.++|++-+
T Consensus 54 ~~vdgiii~~~~~~-~----~~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 54 QRVDGLILTVADAA-T----SPALDLLDAERVPYVLA 85 (266)
T ss_pred cCCCEEEEecCCCC-c----hHHHHHHhhCCCCEEEE
Confidence 46899998654321 1 23456677788997655
No 488
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=24.39 E-value=1.1e+02 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=26.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEee
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIK 38 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K 38 (498)
|-||||||- |-+.+.|.+.|.++|++|..+-
T Consensus 16 ~~vlVtGat------GfiG~~lv~~L~~~g~~V~~~d 46 (348)
T PRK15181 16 KRWLITGVA------GFIGSGLLEELLFLNQTVIGLD 46 (348)
T ss_pred CEEEEECCc------cHHHHHHHHHHHHCCCEEEEEe
Confidence 569999974 8899999999999999987664
No 489
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=24.37 E-value=79 Score=30.24 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=20.3
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCeeE
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRVT 35 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~ 35 (498)
.|-||||+-|| | |++.++|+.+|+.|-
T Consensus 2 iIglTG~igsG--K----Stv~~~l~~~G~~vi 28 (180)
T PF01121_consen 2 IIGLTGGIGSG--K----STVSKILAELGFPVI 28 (180)
T ss_dssp EEEEEESTTSS--H----HHHHHHHHHTT-EEE
T ss_pred EEEEECCCcCC--H----HHHHHHHHHCCCCEE
Confidence 37799998774 4 677889999999763
No 490
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.33 E-value=93 Score=31.07 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=23.6
Q ss_pred EEEEEeCCcc-CCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVV-SGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~-S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.++||||-- +|||+.+ .+.|-+.|++|.+.
T Consensus 6 k~~lItGas~~~GIG~ai-----A~~la~~G~~Vil~ 37 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGI-----AKACFEQGAELAFT 37 (274)
T ss_pred cEEEEECCCCCCCHHHHH-----HHHHHHCCCEEEEE
Confidence 7899999975 7888654 56677789988653
No 491
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.32 E-value=81 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.0
Q ss_pred EEEEEeCCc-cCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGV-VSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv-~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++|||+- =||||+++ .+.|.++|++|-+-
T Consensus 9 k~alITGa~~~~GIG~a~-----A~~la~~Ga~Vvv~ 40 (299)
T PRK06300 9 KIAFIAGIGDDQGYGWGI-----AKALAEAGATILVG 40 (299)
T ss_pred CEEEEeCCCCCCCHHHHH-----HHHHHHCCCEEEEE
Confidence 679999997 59999875 57899999999763
No 492
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=24.32 E-value=81 Score=30.53 Aligned_cols=30 Identities=40% Similarity=0.666 Sum_probs=21.6
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-++|||| -++||+.+ .+.|-.+|++|.+.
T Consensus 16 k~vlItGa-s~gIG~~i-----a~~l~~~G~~v~~~ 45 (258)
T PRK06935 16 KVAIVTGG-NTGLGQGY-----AVALAKAGADIIIT 45 (258)
T ss_pred CEEEEeCC-CchHHHHH-----HHHHHHCCCEEEEE
Confidence 67899998 46777654 45566789988664
No 493
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=24.26 E-value=63 Score=33.15 Aligned_cols=27 Identities=33% Similarity=0.349 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 15 GKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 15 GkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|=||+.+|++..|+.+|++|+++-=++
T Consensus 10 GgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 10 GLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 448999999999999999999975443
No 494
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.12 E-value=5.8e+02 Score=23.65 Aligned_cols=90 Identities=14% Similarity=0.057 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEEcccCCccchHHHHHHHHHHcCCcceeeeEEEEecCCCccccccCCChhhhHHHHHhc
Q 010866 281 LKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 360 (498)
Q Consensus 281 l~~W~~lv~~v~~~~~~v~IaIVgkY~~l~day~SI~~AL~~aG~~~~v~v~i~~I~se~l~~~~~~~~p~~y~~~~~~l 360 (498)
.+.|.++++.+.+. -+|-++| .+...-.-.-+...|...|..+... . +.. . ..+
T Consensus 20 ~~~l~~~~~~i~~a---~~I~i~G-~G~S~~~A~~~~~~l~~~g~~~~~~------~-~~~-~--------------~~~ 73 (179)
T cd05005 20 EEELDKLISAILNA---KRIFVYG-AGRSGLVAKAFAMRLMHLGLNVYVV------G-ETT-T--------------PAI 73 (179)
T ss_pred HHHHHHHHHHHHhC---CeEEEEe-cChhHHHHHHHHHHHHhCCCeEEEe------C-CCC-C--------------CCC
Confidence 34566677777543 2688887 5422101112334455556554432 1 110 0 123
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeeh
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 398 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGIC 398 (498)
..-|.+|+-.-.|. ....+++++.|++++.|+++|+
T Consensus 74 ~~~D~vI~iS~sG~--t~~~i~~~~~ak~~g~~iI~IT 109 (179)
T cd05005 74 GPGDLLIAISGSGE--TSSVVNAAEKAKKAGAKVVLIT 109 (179)
T ss_pred CCCCEEEEEcCCCC--cHHHHHHHHHHHHCCCeEEEEE
Confidence 34455554432332 3456789999999999999997
No 495
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=24.08 E-value=80 Score=30.49 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=26.1
Q ss_pred EEEEeCCccCCcchHHHHHHHHHHHHHCCCee
Q 010866 3 YVLVTGGVVSGLGKGVTASSIGVLLKACGLRV 34 (498)
Q Consensus 3 ~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v 34 (498)
.|.+|| +||-||-..|.++-+.|-.||.--
T Consensus 33 viWiTG--LSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 33 VIWITG--LSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred EEEEec--cCCCCchhHHHHHHHHHHhcCceE
Confidence 478888 899999999999999999988643
No 496
>PLN02583 cinnamoyl-CoA reductase
Probab=24.03 E-value=1e+02 Score=31.05 Aligned_cols=30 Identities=23% Similarity=0.125 Sum_probs=23.3
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|-|+||||- |-+.+.+-..|.++|++|...
T Consensus 7 k~vlVTGat------G~IG~~lv~~Ll~~G~~V~~~ 36 (297)
T PLN02583 7 KSVCVMDAS------GYVGFWLVKRLLSRGYTVHAA 36 (297)
T ss_pred CEEEEECCC------CHHHHHHHHHHHhCCCEEEEE
Confidence 579999984 556667777778899999875
No 497
>PRK07577 short chain dehydrogenase; Provisional
Probab=24.00 E-value=1.1e+02 Score=28.82 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=25.1
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEeeecc
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCIKIDP 41 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~K~Dp 41 (498)
|.|+||||- ++||+ ++.+.|.++|++|..+--++
T Consensus 4 k~vlItG~s-~~iG~-----~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGAT-KGIGL-----ALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CEEEEECCC-CcHHH-----HHHHHHHHCCCEEEEEeCCc
Confidence 789999885 56665 45567778999998875543
No 498
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.00 E-value=2e+02 Score=29.89 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=26.1
Q ss_pred cCCCEEEEcCCCCCCCchhHHHHHHHHHHcCCCEEeehH
Q 010866 361 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 399 (498)
Q Consensus 361 ~~~DGIilpGG~g~~~~~g~i~~i~~a~e~~iPiLGICl 399 (498)
..+|.++.-||=|. ...+++.+...++|++||=.
T Consensus 56 ~~~d~vi~~GGDGT-----~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDGT-----VLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcHH-----HHHHHHHhccCCCCEEEEec
Confidence 35899999998552 45666666667999999987
No 499
>PRK09291 short chain dehydrogenase; Provisional
Probab=23.99 E-value=1.1e+02 Score=29.32 Aligned_cols=30 Identities=33% Similarity=0.472 Sum_probs=21.7
Q ss_pred EEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 2 k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
|.|+||||- +++| .++.+.|..+|++|...
T Consensus 3 ~~vlVtGas-g~iG-----~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 3 KTILITGAG-SGFG-----REVALRLARKGHNVIAG 32 (257)
T ss_pred CEEEEeCCC-CHHH-----HHHHHHHHHCCCEEEEE
Confidence 789999983 4454 44566777889988764
No 500
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.93 E-value=1.1e+02 Score=28.94 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=22.5
Q ss_pred CEEEEEeCCccCCcchHHHHHHHHHHHHHCCCeeEEe
Q 010866 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTCI 37 (498)
Q Consensus 1 ~k~i~vtGgv~S~lGkGi~~as~g~ll~~~g~~v~~~ 37 (498)
+|-|+||||- ++||+ ++.+.|.++|++|.+.
T Consensus 5 ~~~ilI~Gas-g~iG~-----~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGAS-GGIGR-----AIAELLAKEGAKVVIA 35 (247)
T ss_pred CCEEEEeCCC-cHHHH-----HHHHHHHHCCCEEEEE
Confidence 3789999984 66665 4445667789998765
Done!