Query 010867
Match_columns 498
No_of_seqs 174 out of 2090
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010867.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010867hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v25_A Long-chain-fatty-acid-C 100.0 1.5E-58 5.3E-63 479.5 39.7 387 40-498 16-417 (541)
2 3g7s_A Long-chain-fatty-acid-- 100.0 1.3E-58 4.3E-63 481.3 37.7 396 34-498 11-421 (549)
3 3ni2_A 4-coumarate:COA ligase; 100.0 7.8E-59 2.7E-63 481.4 36.0 405 20-498 4-416 (536)
4 3rix_A Luciferase, luciferin 4 100.0 1.2E-58 4.2E-63 481.5 37.2 400 35-498 13-421 (550)
5 3o83_A Peptide arylation enzym 100.0 3E-58 1E-62 477.7 36.6 384 41-498 29-421 (544)
6 3etc_A AMP-binding protein; ad 100.0 1.8E-57 6.1E-62 474.4 37.4 390 39-498 53-457 (580)
7 3r44_A Fatty acyl COA syntheta 100.0 1.7E-57 5.7E-62 469.2 35.5 381 39-498 13-395 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 8.9E-58 3E-62 473.6 32.4 380 41-498 24-412 (539)
9 2d1s_A Luciferase, luciferin 4 100.0 6.1E-57 2.1E-61 468.0 36.7 404 22-498 9-423 (548)
10 3ivr_A Putative long-chain-fat 100.0 1.4E-56 5E-61 461.8 34.7 375 40-498 4-380 (509)
11 3t5a_A Long-chain-fatty-acid-- 100.0 1.7E-57 6E-62 465.8 27.4 383 39-498 21-465 (480)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.4E-56 8.2E-61 459.5 34.8 372 41-498 1-384 (504)
13 3c5e_A Acyl-coenzyme A synthet 100.0 6.6E-56 2.3E-60 461.9 37.5 387 39-498 35-438 (570)
14 2v7b_A Benzoate-coenzyme A lig 100.0 4.9E-56 1.7E-60 460.0 35.5 386 39-498 21-411 (529)
15 4fuq_A Malonyl COA synthetase; 100.0 1.9E-56 6.6E-61 459.7 31.3 375 46-498 4-381 (503)
16 4gr5_A Non-ribosomal peptide s 100.0 2.8E-56 9.7E-61 465.4 33.0 366 37-498 70-451 (570)
17 1pg4_A Acetyl-COA synthetase; 100.0 1.2E-55 4.2E-60 466.8 34.6 399 41-498 75-499 (652)
18 3tsy_A Fusion protein 4-coumar 100.0 1.4E-55 4.8E-60 487.6 34.9 417 14-498 37-463 (979)
19 1ry2_A Acetyl-coenzyme A synth 100.0 3E-55 1E-59 464.0 33.4 400 41-498 81-508 (663)
20 3fce_A D-alanine--poly(phospho 100.0 8.7E-56 3E-60 456.4 28.1 368 42-498 1-382 (512)
21 3e7w_A D-alanine--poly(phospho 100.0 2.2E-55 7.5E-60 453.1 29.9 367 42-498 1-381 (511)
22 3rg2_A Enterobactin synthase c 100.0 7E-55 2.4E-59 458.9 33.9 382 41-498 26-416 (617)
23 4dg8_A PA1221; ANL superfamily 100.0 8.6E-55 2.9E-59 456.7 33.6 362 40-498 25-401 (620)
24 1amu_A GRSA, gramicidin synthe 100.0 2.8E-54 9.5E-59 449.0 34.5 363 40-498 37-412 (563)
25 3l8c_A D-alanine--poly(phospho 100.0 9.2E-55 3.1E-59 449.8 29.9 368 41-498 3-385 (521)
26 3gqw_A Fatty acid AMP ligase; 100.0 4.1E-54 1.4E-58 450.8 33.4 387 32-498 11-444 (576)
27 3kxw_A Saframycin MX1 syntheta 100.0 2.3E-54 7.8E-59 453.9 31.2 384 39-498 8-441 (590)
28 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-54 6.2E-59 445.5 27.3 376 43-498 2-380 (501)
29 3nyq_A Malonyl-COA ligase; A/B 100.0 2E-54 6.9E-59 444.6 24.7 364 39-498 19-387 (505)
30 3ite_A SIDN siderophore synthe 100.0 1.4E-53 4.9E-58 444.8 30.4 382 39-498 17-409 (562)
31 2vsq_A Surfactin synthetase su 100.0 6.9E-51 2.3E-55 461.1 35.7 366 41-498 463-843 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6.8E-31 2.3E-35 257.1 14.6 191 219-476 36-226 (358)
33 3hgu_A EHPF; phenazine, antibi 100.0 4.2E-30 1.4E-34 253.4 16.9 226 217-498 88-349 (369)
34 3qov_A Phenylacetate-coenzyme 100.0 8.3E-30 2.8E-34 257.0 17.6 220 216-498 81-304 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 3E-29 1E-33 253.0 21.0 220 216-498 86-309 (437)
36 2y4o_A Phenylacetate-coenzyme 100.0 6.3E-29 2.2E-33 251.1 20.3 236 198-498 73-311 (443)
37 2y27_A Phenylacetate-coenzyme 93.9 0.86 2.9E-05 44.7 14.0 126 55-183 88-222 (437)
38 3qov_A Phenylacetate-coenzyme 93.7 0.84 2.9E-05 44.7 13.6 124 57-183 86-218 (436)
39 2y4o_A Phenylacetate-coenzyme 93.3 0.93 3.2E-05 44.5 13.2 126 55-183 90-224 (443)
40 4eql_A 4-substituted benzoates 93.0 1.9 6.6E-05 43.6 14.9 31 218-248 91-122 (581)
41 3ipl_A 2-succinylbenzoate--COA 89.0 6.3 0.00022 39.2 14.3 122 55-182 161-285 (501)
42 3hgu_A EHPF; phenazine, antibi 86.5 2.9 0.0001 39.7 9.6 124 55-182 89-242 (369)
43 1mdb_A 2,3-dihydroxybenzoate-A 84.5 16 0.00055 36.6 14.5 122 55-182 180-309 (539)
44 2d1s_A Luciferase, luciferin 4 81.9 11 0.00037 38.0 12.0 122 57-182 192-320 (548)
45 3o83_A Peptide arylation enzym 81.5 17 0.00058 36.5 13.2 123 55-183 189-319 (544)
46 4gr5_A Non-ribosomal peptide s 79.8 10 0.00036 38.4 11.0 123 55-183 212-338 (570)
47 3r44_A Fatty acyl COA syntheta 78.5 21 0.00073 35.5 12.8 120 56-182 169-295 (517)
48 4dg8_A PA1221; ANL superfamily 78.3 13 0.00044 38.2 11.2 123 55-183 162-288 (620)
49 3rg2_A Enterobactin synthase c 77.3 36 0.0012 34.7 14.3 122 56-183 183-314 (617)
50 3rix_A Luciferase, luciferin 4 75.1 20 0.0007 35.9 11.6 123 57-182 190-318 (550)
51 3e7w_A D-alanine--poly(phospho 74.8 19 0.00065 35.8 11.1 123 55-182 141-271 (511)
52 1t5h_X 4-chlorobenzoyl COA lig 74.4 17 0.0006 35.9 10.7 122 55-182 151-283 (504)
53 3kxw_A Saframycin MX1 syntheta 74.1 24 0.00083 35.7 11.9 123 55-182 165-300 (590)
54 3fce_A D-alanine--poly(phospho 73.1 20 0.00068 35.6 10.8 123 55-182 142-272 (512)
55 4gs5_A Acyl-COA synthetase (AM 72.7 19 0.00066 33.8 10.1 131 41-182 24-159 (358)
56 3c5e_A Acyl-coenzyme A synthet 72.1 40 0.0014 34.0 12.9 124 55-183 204-334 (570)
57 3g7s_A Long-chain-fatty-acid-- 71.0 51 0.0017 32.9 13.4 106 219-328 33-140 (549)
58 1v25_A Long-chain-fatty-acid-C 70.8 25 0.00086 35.2 11.0 125 55-182 174-304 (541)
59 3ezx_A MMCP 1, monomethylamine 70.2 23 0.00078 30.7 9.0 53 266-318 93-149 (215)
60 3ivr_A Putative long-chain-fat 69.1 56 0.0019 32.2 13.1 121 55-181 158-282 (509)
61 3ni2_A 4-coumarate:COA ligase; 68.8 37 0.0013 33.9 11.7 101 218-328 35-137 (536)
62 1pg4_A Acetyl-COA synthetase; 67.1 32 0.0011 35.4 11.1 124 56-183 255-390 (652)
63 3etc_A AMP-binding protein; ad 64.9 28 0.00096 35.2 10.0 124 55-183 223-353 (580)
64 3t5a_A Long-chain-fatty-acid-- 63.0 80 0.0027 30.6 12.7 107 218-328 37-148 (480)
65 1ry2_A Acetyl-coenzyme A synth 61.4 64 0.0022 33.2 12.1 100 218-322 95-196 (663)
66 1amu_A GRSA, gramicidin synthe 60.5 74 0.0025 31.9 12.2 96 218-325 52-149 (563)
67 3nyq_A Malonyl-COA ligase; A/B 58.2 66 0.0022 31.7 11.1 103 55-164 153-259 (505)
68 3tbh_A O-acetyl serine sulfhyd 57.0 47 0.0016 30.8 9.2 66 92-157 61-127 (334)
69 2v7b_A Benzoate-coenzyme A lig 53.9 60 0.002 32.2 10.1 87 238-327 47-135 (529)
70 3tsy_A Fusion protein 4-coumar 53.3 80 0.0027 34.3 11.6 126 54-182 222-355 (979)
71 3gqw_A Fatty acid AMP ligase; 51.0 80 0.0028 31.5 10.6 123 56-182 175-310 (576)
72 3l8c_A D-alanine--poly(phospho 50.8 1.3E+02 0.0044 29.6 12.0 124 56-182 144-275 (521)
73 2vsq_A Surfactin synthetase su 50.5 36 0.0012 38.4 8.5 123 55-183 605-732 (1304)
74 4fuq_A Malonyl COA synthetase; 50.4 58 0.002 32.1 9.2 85 239-326 28-114 (503)
75 3ite_A SIDN siderophore synthe 49.4 90 0.0031 31.1 10.6 125 57-184 175-307 (562)
76 3vc3_A Beta-cyanoalnine syntha 46.3 94 0.0032 28.9 9.4 64 94-157 78-142 (344)
77 4b2g_A GH3-1 auxin conjugating 44.2 5.5 0.00019 40.5 0.5 31 218-248 97-128 (609)
78 3ist_A Glutamate racemase; str 40.8 98 0.0033 27.7 8.2 63 46-115 19-81 (269)
79 4epl_A Jasmonic acid-amido syn 37.3 7.8 0.00027 39.2 0.3 31 217-247 95-126 (581)
80 1z7w_A Cysteine synthase; tran 35.2 1.7E+02 0.0059 26.7 9.3 65 93-157 57-122 (322)
81 4aec_A Cysteine synthase, mito 34.7 1.6E+02 0.0055 28.4 9.1 63 94-156 166-229 (430)
82 2jtq_A Phage shock protein E; 34.6 99 0.0034 21.5 6.0 46 75-127 22-67 (85)
83 4h1h_A LMO1638 protein; MCCF-l 32.7 84 0.0029 29.0 6.6 60 97-156 8-86 (327)
84 4eez_A Alcohol dehydrogenase 1 32.3 1.2E+02 0.0043 27.8 7.9 77 76-155 136-215 (348)
85 3sr3_A Microcin immunity prote 32.1 1.4E+02 0.0048 27.7 8.0 60 97-156 9-87 (336)
86 2q3b_A Cysteine synthase A; py 31.6 2.1E+02 0.0073 25.9 9.3 64 93-157 58-122 (313)
87 3tqh_A Quinone oxidoreductase; 30.7 1.3E+02 0.0045 27.3 7.7 75 76-155 125-203 (321)
88 2egu_A Cysteine synthase; O-ac 29.6 2.3E+02 0.0079 25.5 9.1 64 93-157 56-120 (308)
89 3ju7_A Putative PLP-dependent 29.5 1.2E+02 0.004 28.5 7.3 60 92-154 69-135 (377)
90 2gzm_A Glutamate racemase; enz 29.1 2.4E+02 0.0082 24.9 8.9 61 46-113 17-77 (267)
91 4e5s_A MCCFLIKE protein (BA_56 29.0 1.6E+02 0.0054 27.2 7.8 60 97-156 8-86 (331)
92 2v03_A Cysteine synthase B; py 28.5 2.7E+02 0.0092 25.1 9.3 63 93-156 52-115 (303)
93 2pqm_A Cysteine synthase; OASS 28.4 2.2E+02 0.0074 26.3 8.8 64 93-157 69-133 (343)
94 3two_A Mannitol dehydrogenase; 28.1 1.5E+02 0.0051 27.3 7.7 74 76-153 149-225 (348)
95 3tla_A MCCF; serine protease, 27.3 1.1E+02 0.0038 28.8 6.5 60 97-156 39-117 (371)
96 1zsy_A Mitochondrial 2-enoyl t 26.7 2E+02 0.0068 26.6 8.3 79 76-155 139-223 (357)
97 2cf5_A Atccad5, CAD, cinnamyl 26.4 1.6E+02 0.0055 27.3 7.5 78 76-156 152-233 (357)
98 2i2x_B MTAC, methyltransferase 26.2 2.2E+02 0.0075 25.1 8.0 89 264-401 122-220 (258)
99 3uhf_A Glutamate racemase; str 26.2 1.8E+02 0.0062 26.0 7.4 63 46-115 38-100 (274)
100 3out_A Glutamate racemase; str 25.7 2.8E+02 0.0097 24.5 8.6 61 47-114 22-82 (268)
101 3goh_A Alcohol dehydrogenase, 25.6 1.9E+02 0.0064 26.1 7.8 73 76-153 115-190 (315)
102 3dwg_A Cysteine synthase B; su 24.9 2.9E+02 0.01 25.2 8.9 63 93-156 64-127 (325)
103 1zuw_A Glutamate racemase 1; ( 24.8 2.7E+02 0.0093 24.7 8.4 62 46-114 17-79 (272)
104 3ri6_A O-acetylhomoserine sulf 24.7 2.5E+02 0.0084 26.9 8.7 62 105-166 100-164 (430)
105 3qwb_A Probable quinone oxidor 24.5 3E+02 0.01 24.9 9.1 55 97-155 145-200 (334)
106 3ijw_A Aminoglycoside N3-acety 23.8 58 0.002 29.1 3.5 25 87-111 18-42 (268)
107 3dzz_A Putative pyridoxal 5'-p 23.8 2.3E+02 0.008 26.1 8.3 52 99-153 107-165 (391)
108 3s2e_A Zinc-containing alcohol 23.7 2.2E+02 0.0076 26.0 8.0 77 76-156 139-218 (340)
109 1h2b_A Alcohol dehydrogenase; 23.5 2.6E+02 0.0089 25.8 8.5 62 92-156 176-239 (359)
110 2jfz_A Glutamate racemase; cel 23.4 1.3E+02 0.0046 26.4 6.0 61 46-113 14-74 (255)
111 1yqd_A Sinapyl alcohol dehydro 22.4 2.8E+02 0.0095 25.7 8.4 62 92-156 178-240 (366)
112 2jfq_A Glutamate racemase; cel 22.4 3.5E+02 0.012 24.2 8.7 62 45-113 35-96 (286)
113 3sma_A FRBF; N-acetyl transfer 22.2 65 0.0022 29.1 3.5 30 75-111 20-49 (286)
114 1o69_A Aminotransferase; struc 22.1 2.7E+02 0.0092 25.9 8.4 60 94-156 65-130 (394)
115 2nyg_A YOKD protein; PFAM02522 22.1 64 0.0022 28.9 3.5 23 89-111 18-40 (273)
116 2vvt_A Glutamate racemase; iso 22.1 3.8E+02 0.013 24.0 8.9 62 45-113 37-98 (290)
117 2e7j_A SEP-tRNA:Cys-tRNA synth 21.9 3.5E+02 0.012 24.5 9.1 55 98-155 90-154 (371)
118 3l6b_A Serine racemase; pyrido 21.6 1.8E+02 0.0062 26.9 6.8 58 100-158 75-132 (346)
119 4b7c_A Probable oxidoreductase 21.4 2.8E+02 0.0095 25.2 8.1 58 94-154 143-201 (336)
120 1gu7_A Enoyl-[acyl-carrier-pro 21.3 2E+02 0.007 26.5 7.2 79 76-155 138-223 (364)
121 1eg5_A Aminotransferase; PLP-d 21.2 3.1E+02 0.011 25.0 8.5 14 398-412 306-319 (384)
122 1y7l_A O-acetylserine sulfhydr 20.4 4E+02 0.014 24.0 8.9 64 93-157 53-117 (316)
123 3isl_A Purine catabolism prote 20.3 3.5E+02 0.012 25.1 8.8 58 98-156 83-144 (416)
124 3a2b_A Serine palmitoyltransfe 20.2 4.1E+02 0.014 24.5 9.3 54 98-155 124-180 (398)
No 1
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=1.5e-58 Score=479.52 Aligned_cols=387 Identities=24% Similarity=0.307 Sum_probs=320.6
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (498)
Q Consensus 40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 119 (498)
...++.++|.++++++|+++|+++. ++ +..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++|
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 90 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 90 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3468999999999999999999864 22 123689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (498)
Q Consensus 120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (498)
||+++|++++|+++.++.+++.+++++++++++|++......+.+... ..+..+.++.+++... .....
T Consensus 91 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~ 159 (541)
T 1v25_A 91 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRG-ELKTVQHFVVMDEKAP----------EGYLA 159 (541)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGG-GCSSCCEEEESSSCCC----------TTCEE
T ss_pred HHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHh-hCCCccEEEEecCCCC----------ccccc
Confidence 999999999999999999999999999999999999887665543322 2345566666654321 01345
Q ss_pred HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhh--hhhhccccCCCCCCcEEEEecChHH
Q 010867 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAH 277 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~l~~~pl~h 277 (498)
++++...... .....++++++++|||||||.||+|+++|+++++..... ...+ ++.++|++++.+|++|
T Consensus 160 ~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 160 YEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFH 230 (541)
T ss_dssp HHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTS
T ss_pred HHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchh
Confidence 6665533211 133457899999999999999999999999998776552 2223 6789999999999999
Q ss_pred HHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010867 278 ILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (498)
Q Consensus 278 ~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (498)
.+++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++.......
T Consensus 231 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------------------- 290 (541)
T 1v25_A 231 VNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGH-------------------- 290 (541)
T ss_dssp HHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTC--------------------
T ss_pred hhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCC--------------------
Confidence 9999777889999999999864 999999999999999999999999998764332110
Q ss_pred HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC----
Q 010867 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE---- 431 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~---- 431 (498)
..++||.+++||+++++++.+++ +.+|+++++.||+||++.+++......
T Consensus 291 -------------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~ 344 (541)
T 1v25_A 291 -------------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLES 344 (541)
T ss_dssp -------------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTT
T ss_pred -------------------------cchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccc
Confidence 11489999999999999999999 567999999999999998777654331
Q ss_pred ------ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 432 ------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 432 ------~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
....+++|+|+|+++++|+| ++++.++.+.++.|||+|+|++++.|||++|+.|++.| .||||+||
T Consensus 345 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TG 417 (541)
T 1v25_A 345 LSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTG 417 (541)
T ss_dssp SCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEE
T ss_pred cCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcC
Confidence 12347899999999999999 88877766545789999999999999999999999999 59999998
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.3e-58 Score=481.28 Aligned_cols=396 Identities=20% Similarity=0.239 Sum_probs=330.4
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCC--CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 010867 34 FPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (498)
Q Consensus 34 ~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~--~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~ 111 (498)
+|..+.+..++.++|.++++++||++|+++. ++ .++.++++||+||.++++++|+.|++.|+++||+|+++++|+
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 87 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS 87 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 4555566789999999999999999999986 42 133346899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHh
Q 010867 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (498)
Q Consensus 112 ~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 191 (498)
+++++++|||+++|++++|+++.++.+++.+++++++++++|++......+...... ...+.++..+..
T Consensus 88 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------- 156 (549)
T 3g7s_A 88 IDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE--------- 156 (549)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS---------
T ss_pred HHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC---------
Confidence 999999999999999999999999999999999999999999999877766544332 235556666532
Q ss_pred hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEE
Q 010867 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~ 271 (498)
...++++...............++++++|+|||||||.||+|+++|.++++.+......+ ++.++|++++
T Consensus 157 -----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~ 226 (549)
T 3g7s_A 157 -----VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVG 226 (549)
T ss_dssp -----SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEEC
T ss_pred -----CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEE
Confidence 235666665432221122222348999999999999999999999999999998887777 8899999999
Q ss_pred ecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 010867 272 FLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (498)
Q Consensus 272 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (498)
.+|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.......
T Consensus 227 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------- 291 (549)
T 3g7s_A 227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK--------------- 291 (549)
T ss_dssp CSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC---------------
T ss_pred eCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc---------------
Confidence 9999999999888888999999999876 999999999999999999999999998764322100
Q ss_pred HHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHh----cC---CceEeeeccccCccc
Q 010867 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETCGP 423 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~g---~~l~~~YG~tE~~~~ 423 (498)
..+ .++||.+++||+++++++.+++.+. ++ +++++.||+||++.+
T Consensus 292 --------------------~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~ 343 (549)
T 3g7s_A 292 --------------------TYD--------WSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPM 343 (549)
T ss_dssp --------------------CCC--------CTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSE
T ss_pred --------------------cCC--------ccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchh
Confidence 001 1489999999999999999999887 66 899999999999988
Q ss_pred ccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc---cCC--ccccC
Q 010867 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFHTG 498 (498)
Q Consensus 424 ~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f---~dG--w~~TG 498 (498)
++..........+++|+|+++++++|+|.+++. +++.|+.|||+|+|++++.|||++++.+++.| .+| ||+||
T Consensus 344 ~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TG 421 (549)
T 3g7s_A 344 VTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTG 421 (549)
T ss_dssp EEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEE
T ss_pred hhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccC
Confidence 877665554556899999999999999944554 44456999999999999999999999999998 788 99998
No 3
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.8e-59 Score=481.42 Aligned_cols=405 Identities=23% Similarity=0.306 Sum_probs=327.8
Q ss_pred CcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCC
Q 010867 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (498)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~ 99 (498)
.+..+|++......+| ...++.++|.++++++|+++|+++. ++. +++||+||.++++++|+.|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 4456777766543333 3478999999999999999999874 322 5899999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEe
Q 010867 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (498)
Q Consensus 100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~ 179 (498)
+||+|+++++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+.+..... .. .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999988776655443221 22 34455
Q ss_pred cCCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccc
Q 010867 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (498)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~ 259 (498)
+.... ....++++...... ..+.....++++++++|||||||.||+|+++|.++++.+....... ..
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~ 216 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NP 216 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SC
T ss_pred cCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cc
Confidence 43221 23456666654322 2233445789999999999999999999999999998876643321 00
Q ss_pred cCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010867 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (498)
Q Consensus 260 ~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (498)
...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------- 289 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------- 289 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence 125788999999999999999976 7788999999999876 9999999999999999999999999886521
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeec
Q 010867 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG 416 (498)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG 416 (498)
..+..++ ++||.+++||+++++++.+++++.| ++++++.||
T Consensus 290 ------------------------------~~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 290 ------------------------------DLDKHDL--------SSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ------------------------------CGGGSCC--------TTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred ------------------------------ccccCCC--------ccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 1111112 4899999999999999999999998 899999999
Q ss_pred cccCcccccccC----CCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c
Q 010867 417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491 (498)
Q Consensus 417 ~tE~~~~~~~~~----~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~ 491 (498)
+||++.+++.+. ......++++|+|+++++++|+|.+++. +++.|+.|||+|+|++++.|||++|+.|.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGA--SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCc--CCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999997765542 1223345899999999999999933344 44556999999999999999999999999999 8
Q ss_pred CCccccC
Q 010867 492 DGWFHTG 498 (498)
Q Consensus 492 dGw~~TG 498 (498)
+|||+||
T Consensus 410 ~g~~~TG 416 (536)
T 3ni2_A 410 EGWLHTG 416 (536)
T ss_dssp TSCEEEE
T ss_pred CCceEcc
Confidence 9999998
No 4
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.2e-58 Score=481.45 Aligned_cols=400 Identities=24% Similarity=0.306 Sum_probs=321.6
Q ss_pred CCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 010867 35 PSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (498)
Q Consensus 35 ~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~ 114 (498)
+..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|+.|++.|+++||+|+++++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4455566899999999999999999986220 22112 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcC
Q 010867 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (498)
Q Consensus 115 ~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 194 (498)
++++|||+++|++++|+++.++.+++.++++.++++++|++......+.+... ..+....++.++.... .
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~ 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQK-KLPIIQKIIIMDSKTD---------Y 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHH-HCTTCCEEEETTCSSC---------B
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHh-hCCCcceEEEEcCCcc---------c
Confidence 99999999999999999999999999999999999999999987776655433 3355667777665321 1
Q ss_pred cceeeHHHHHhccccc-----c-ccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcE
Q 010867 195 IKPYSWDEFLHLGKVN-----E-MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDV 268 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 268 (498)
....++.++....... . .+.....++++++|+|||||||.||+|+++|.+++..+......+ ...++.++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 1234566665432111 1 111122457899999999999999999999999998877655431 1126788999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHH
Q 010867 269 YLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (498)
Q Consensus 269 ~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (498)
+++.+|++|.+|+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 299 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------- 299 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence 9999999999999888889999999999876 9999999999999999999999999986521
Q ss_pred HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCc-eEeeeccccCcccccc
Q 010867 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGPTTV 426 (498)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~-l~~~YG~tE~~~~~~~ 426 (498)
..+..++ ++||.+++||+++++++.+++.+.++.. +++.||+||+++.++.
T Consensus 300 --------------------~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 300 --------------------LIDKYDL--------SNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp --------------------GGGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred --------------------cccccCc--------ccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 1111122 4899999999999999999999999875 9999999999988777
Q ss_pred cCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 427 ~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
..... ...+++|+|+|+++++|+|.+++ .+++.|+.|||+|+|++++.|||++++.|++.| .+|||+||
T Consensus 352 ~~~~~-~~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TG 421 (550)
T 3rix_A 352 TPEGD-DKPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421 (550)
T ss_dssp CCTTC-CCTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEE
T ss_pred CCCCC-CCCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecC
Confidence 66544 34489999999999999993334 445566999999999999999999999999999 89999998
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3e-58 Score=477.69 Aligned_cols=384 Identities=14% Similarity=0.139 Sum_probs=319.5
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999874 3 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 196 (498)
|+++|++++|+++.++.+++.+++++++++++|++..... ...+...........++.++....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876531 111222223345556666654321
Q ss_pred eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (498)
...+.++...............++++++++|||||||.||+|+++|.++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 224445544332222222445689999999999999999999999999999999887777 889999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010867 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (498)
Q Consensus 277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (498)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 302 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------- 302 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------
Confidence 9999985 7788999999999876 9999999999999999999999999987643211
Q ss_pred HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~ 433 (498)
..++ ++||.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus 303 -----------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 303 -----------------KDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -----------------HHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -----------------cccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 1122 389999999999999999999999999999999999988655444333334
Q ss_pred ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
...++|+|+ ++++++|+| +++..++. |+.|||+|+|++++.|||++|+.+++.| .+|||+||
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG 421 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSG 421 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcC
Confidence 447899996 899999999 77775554 5999999999999999999999999999 89999998
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.8e-57 Score=474.42 Aligned_cols=390 Identities=17% Similarity=0.173 Sum_probs=319.8
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 118 (498)
..++...++|+++++.+||++|+++. +. ++..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45566679999999999999999985 43 334479999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchh--HHhhcccccccCCc-cEEEEecCCcHHHHHHHhhcCc
Q 010867 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGI 195 (498)
Q Consensus 119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~ 195 (498)
|||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.+... ..+.. ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA-ECGDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHH-HHCSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhh-hCCCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999987654 33333222 22333 45555554321 1
Q ss_pred ceeeHHHHHhccccccccC---CCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEe
Q 010867 196 KPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSF 272 (498)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~ 272 (498)
....+.+............ ....++++++++|||||||.||+|.++|.+++..+......+ ++.+++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence 2456666665432211111 245689999999999999999999999999888776654444 78899999999
Q ss_pred cChHHHHHHHH-HHHHHHcCcEEEEeC---CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 010867 273 LPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (498)
Q Consensus 273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (498)
.|+.|..++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|++++.+++..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99999988876 777899999998874 38999999999999999999999999886410
Q ss_pred HHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccC
Q 010867 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCF 428 (498)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~ 428 (498)
....++ ++||.+++||+++++++.+++.+.+|+++++.||+||++..++..+
T Consensus 335 --------------------~~~~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------LSHYNF--------STLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C---CC--------TTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------cccCCC--------ccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 111112 4899999999999999999999989999999999999987666554
Q ss_pred CCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec-----CCCcccccCCchhhhhhccCCccccC
Q 010867 429 PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 429 ~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
.. ...++++|+|+||++++|+| ++++.++. |+.|||+|+| ++++.||+++|+.+++.|.||||+||
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~--g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TG 457 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEV--GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCCCCCC--CCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecC
Confidence 33 34458999999999999999 77765554 5899999997 78999999999999999999999998
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.7e-57 Score=469.19 Aligned_cols=381 Identities=22% Similarity=0.317 Sum_probs=313.4
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 118 (498)
+...|+.++|.++++++|+++|+++. +.. .++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 45689999999999999999999875 321 58999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010867 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (498)
Q Consensus 119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 198 (498)
|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++..... .
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIGA---------------D 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEEH---------------H
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccCc---------------c
Confidence 999999999999999999999999999999999999987766554332211 111111111110 1
Q ss_pred eHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010867 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (498)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (498)
.+.+..... ....+.....++++++++|||||||.||+|+++|.++++.+......+ ++..+|++++.+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333222 112233445789999999999999999999999999999998887776 88999999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 010867 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (498)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (498)
+++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+.+.....
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~------------------------ 279 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA------------------------ 279 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH------------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc------------------------
Confidence 999886666669999998876 9999999999999999999999999987632211
Q ss_pred cccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-ccccC
Q 010867 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (498)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-~~~~~ 436 (498)
.. ..++||.+++||+++++++.+++.+. ++++++.||+||+++.++...... ....+
T Consensus 280 -------------~~--------~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 280 -------------EL--------DAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp -------------HC--------CCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred -------------cC--------CCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 11 12489999999999999999999987 999999999999988777654432 34558
Q ss_pred ccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 437 s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
++|+|+++++++|+| +++..++.+ .|||+|+|++++.|||++|+.+++.|.+|||+||
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TG 395 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 395 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEE
T ss_pred CCCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecc
Confidence 999999999999999 776654443 7999999999999999999999999999999998
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=8.9e-58 Score=473.61 Aligned_cols=380 Identities=18% Similarity=0.157 Sum_probs=310.1
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
..++.++|.++++++|+++|+++. + +++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 196 (498)
|+++|++++|+++.++.+++.++++.++++++|++..... ..........+..+.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111112224445555544321
Q ss_pred eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (498)
.+.++.... ..+.......++++++++|||||||.||||+++|+++++.+......+ ++.++|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 011111111 111122345678999999999999999999999999999988877766 789999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010867 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (498)
Q Consensus 277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (498)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999974 7888999999999876 99999999999999999999999999876432110
Q ss_pred HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~ 433 (498)
. ..++||.+++||+++++++.+++++.+|+++++.||+||++..++........
T Consensus 295 ------------------~--------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 ------------------D--------DLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp ------------------C--------CCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------C--------CccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 0 11489999999999999999999998999999999999965433322211123
Q ss_pred ccCccccCcCC-ceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 434 MVGTAGPVSVY-SELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 434 ~~~s~G~~~~g-~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
..+++|+|+++ .+++|+| +++..++ .|+.|||+|+|++++.|||++++.|++.| .||||+||
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG 412 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRDVK--PGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTG 412 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCBCC--TTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCCCCc--CCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecC
Confidence 34789999976 5899999 7776555 45899999999999999999999999999 79999998
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.1e-57 Score=468.03 Aligned_cols=404 Identities=23% Similarity=0.274 Sum_probs=319.7
Q ss_pred CCceecCcCCCCCCCCCCCcccHHH-HHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCC
Q 010867 22 GPVYRNLLASNGFPSVDSDLNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100 (498)
Q Consensus 22 ~~~~r~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~ 100 (498)
.++|++....-.. +.+.++.+ ++.+.++++ +++|+++. ++. +++||+||.++++++|+.|++.|+++
T Consensus 9 ~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~ 76 (548)
T 2d1s_A 9 NIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVV 76 (548)
T ss_dssp TSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566666532221 23468999 899889999 99999863 221 58999999999999999999999999
Q ss_pred CCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEec
Q 010867 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (498)
Q Consensus 101 g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~ 180 (498)
||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.+... ..+....++.++
T Consensus 77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~ 155 (548)
T 2d1s_A 77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQK-TVTTIKTIVILD 155 (548)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHH-HSTTCCEEEETT
T ss_pred CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhc-CCCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999987665544322 123244555554
Q ss_pred CCcHHHHHHHhhcCcceeeHHHHHhccccccccCCCC------CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhh
Q 010867 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254 (498)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~ 254 (498)
.... ......++++.........+.... .++++++++|||||||.||+|+++|+++++.+.....
T Consensus 156 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~ 226 (548)
T 2d1s_A 156 SKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226 (548)
T ss_dssp CSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred Cccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence 3210 001234666654321110111111 2389999999999999999999999999988877655
Q ss_pred hhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHH
Q 010867 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332 (498)
Q Consensus 255 ~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 332 (498)
.+. ..++.++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|++++.+++...
T Consensus 227 ~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~- 302 (548)
T 2d1s_A 227 PIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL- 302 (548)
T ss_dssp TTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC-
T ss_pred hhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc-
Confidence 410 026788999999999999999987 55567 9999998876 99999999999999999999999998865210
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCce
Q 010867 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFL 411 (498)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l 411 (498)
.+..++ ++||.+++||+++++++.+++.+.| ++++
T Consensus 303 ------------------------------------~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 338 (548)
T 2d1s_A 303 ------------------------------------LNKYDL--------SNLVEIASGGAPLSKEVGEAVARRFNLPGV 338 (548)
T ss_dssp ------------------------------------GGGSCC--------TTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred ------------------------------------cccccc--------cceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence 111112 4899999999999999999999999 6889
Q ss_pred EeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-
Q 010867 412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (498)
Q Consensus 412 ~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f- 490 (498)
++.||+||++.+++..... ....+++|+|+|+++++|+|.+++. +++.|+.|||+|+|++++.|||++++.|++.|
T Consensus 339 ~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 415 (548)
T 2d1s_A 339 RQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKK--SLGPNRRGEVCVKGPMLMKGYVNNPEATKELID 415 (548)
T ss_dssp EEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred eeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCc--cCCCCCCeEEEECCHHHhhhhcCChHHhhhccc
Confidence 9999999998877664433 2345899999999999999943444 44556999999999999999999999999999
Q ss_pred cCCccccC
Q 010867 491 IDGWFHTG 498 (498)
Q Consensus 491 ~dGw~~TG 498 (498)
.+|||+||
T Consensus 416 ~~g~~~TG 423 (548)
T 2d1s_A 416 EEGWLHTG 423 (548)
T ss_dssp TTSCEEEE
T ss_pred CCcEEEcc
Confidence 79999998
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.4e-56 Score=461.83 Aligned_cols=375 Identities=22% Similarity=0.297 Sum_probs=310.9
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (498)
Q Consensus 40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 119 (498)
...|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999874 3 689999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (498)
Q Consensus 120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (498)
||+++|++++|+++.++.+++.+++++++++++|++......+..... .......++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLP-SLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGG-GCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhc-ccCCceEEEEcCCCCc--------------C
Confidence 999999999999999999999999999999999999987766444332 3355666776654211 1
Q ss_pred HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010867 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (498)
+.++...............++++++++|||||||.||+|+++|+++++.+......+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222333455789999999999999999999999999999998887777 889999999999999999
Q ss_pred HHHHHHHHHHc-CcEEEEeCCChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhc
Q 010867 280 DRVIEEYFFRR-GASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (498)
Q Consensus 280 g~~~~~~~l~~-G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (498)
|+...+.++.. |+++++...++..+++.++++++|+++++|.++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99887665444 55555444599999999999999999999999999876320
Q ss_pred ccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCCccccCc
Q 010867 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (498)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s 437 (498)
..++ ++||.++.+|++ ++.+.+.+.+ ++++++.||+||++++++....... ..+
T Consensus 268 ------------~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------ccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0011 389999999987 8888888888 8999999999999987776544322 256
Q ss_pred cccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 438 ~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
+|+|+++++++|+| +++..++ .|+.|||+|+|++++.|||++++.+++.|.+|||+||
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~--~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TG 380 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLP--PGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTG 380 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCC--TTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEE
T ss_pred ccccCCCcEEEEEC-CCCCCCC--CCCceEEEEecCCccccccCCHHHhHHHhhcCCcccc
Confidence 99999999999999 7776554 4599999999999999999999999999999999998
No 11
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.7e-57 Score=465.79 Aligned_cols=383 Identities=16% Similarity=0.179 Sum_probs=299.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeccccC---CCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 010867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVD---GKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d---~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~ 115 (498)
....++.++|.++++++||++|+++. + +.++.++++||+||.++++++|+.|++.|+ +||+|+++++|+++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~---~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~ 96 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFM---DYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV 96 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEE---ETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEe---cccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH
Confidence 45689999999999999999999986 4 234445799999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHcCCeEeecCC---CCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccC-CccEEEEecCCcHHHHHHHh
Q 010867 116 EAMEACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQ-RLRVMVCFTSLTAEQKEMAV 191 (498)
Q Consensus 116 ~~~lA~~~~G~~~~~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~ 191 (498)
+++|||+++|++++|+++ .++.+++.+++++++++++|++......+.+....... ....++.++...
T Consensus 97 ~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 168 (480)
T 3t5a_A 97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-------- 168 (480)
T ss_dssp HHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC--------
T ss_pred HHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc--------
Confidence 999999999999999999 78899999999999999999999877766543322110 111233322111
Q ss_pred hcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCC------
Q 010867 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------ 265 (498)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~------ 265 (498)
... ..........++++++|+|||||||.||||+++|.++++.+......+ .+..
T Consensus 169 -------------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~ 229 (480)
T 3t5a_A 169 -------------LDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPP 229 (480)
T ss_dssp -------------TTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCT
T ss_pred -------------ccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCC
Confidence 000 111223345678999999999999999999999999999988877766 5555
Q ss_pred CcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhch
Q 010867 266 DDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRP 339 (498)
Q Consensus 266 ~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~ 339 (498)
+|++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++.....
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~------- 301 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT------- 301 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-------
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-------
Confidence 899999999999999875 7888999999999862 899999999999999 88999998887653210
Q ss_pred HHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEe
Q 010867 340 LRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQ 413 (498)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~l~~ 413 (498)
.......++ ++||.+++||+++++++.+++.+.++ +.+++
T Consensus 302 --------------------------~~~~~~~~l--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~ 347 (480)
T 3t5a_A 302 --------------------------DDDMAGRDL--------GNILTILSGSERVQAATIKRFADRFARFNLQERVIRP 347 (480)
T ss_dssp --------------------------TGGGTTCCC--------TTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEE
T ss_pred --------------------------cccccccch--------hhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccc
Confidence 011111112 48999999999999999999999884 37999
Q ss_pred eeccccCcccccccCCCC------------------------ccccCccccCcCCceEEeeecCC-CCCCCCCCCCCCeE
Q 010867 414 GYGLTETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPE-MGYSPLDDPPCGEV 468 (498)
Q Consensus 414 ~YG~tE~~~~~~~~~~~~------------------------~~~~~s~G~~~~g~~i~ivd~~~-~~~~~~~~~~~Gei 468 (498)
.||+||++.+++...... .....++|+|++ ++++|+| ++ +.. ++.|+.|||
T Consensus 348 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~--~~~g~~GEl 423 (480)
T 3t5a_A 348 SYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIE--CPDGTVGEI 423 (480)
T ss_dssp EEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEE--CCTTBCEEE
T ss_pred cccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcC--CCCCCEEEE
Confidence 999999998877655432 123468999999 9999999 55 444 445699999
Q ss_pred EEecCCCcccccCCchhhhhhc------------cCCccccC
Q 010867 469 CVRGKTLFSGYYKNPDLTRESI------------IDGWFHTG 498 (498)
Q Consensus 469 ~v~g~~v~~gY~~~~~~~~~~f------------~dGw~~TG 498 (498)
+|+|++++.|||++|+.|++.| .+|||+||
T Consensus 424 ~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 424 WVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp EEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred EEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 9999999999999999999998 46799998
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.4e-56 Score=459.46 Aligned_cols=372 Identities=20% Similarity=0.240 Sum_probs=299.9
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
|+|+.++|.++++++||++|+++. +.. +++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE--cCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCccee
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 198 (498)
|+++|++++|+++.++.+++.+++++++++++|+ +......+.... ...+ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence 9999999999999999999999999999999999 766544431111 1111 221
Q ss_pred eHHHHHhccc----cccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCC--CCCcEEEEe
Q 010867 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (498)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~l~~ 272 (498)
++++..... ..........++++++++|||||||.||+|+++|+++.+.+......+ ++ .++|++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 222221110 111111344678999999999999999999999999999888776655 56 789999999
Q ss_pred cChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 010867 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (498)
Q Consensus 273 ~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (498)
+|++|.+|+.. ++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+++.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 99999999854 7889999999999876 9999999999999999999999999987632100
Q ss_pred HHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCC
Q 010867 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (498)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~ 430 (498)
....+ .++||.+++||+++++++.+++++.+++.+++.||+||++ .+....
T Consensus 266 ------------------~~~~~--------l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSSLK--------LDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ------------------TCCCC--------CTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ------------------ccccc--------CccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 00001 1489999999999999999999999999999999999994 333222
Q ss_pred CccccCccccCcCCceEEeeecCCC-CCCCCCCCCCCeEEEe-cCCCcccccCCchhhhhhccCCccccC
Q 010867 431 EMCMVGTAGPVSVYSELRLEEVPEM-GYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 431 ~~~~~~s~G~~~~g~~i~ivd~~~~-~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
....+++|+|.++++++|+| +++ ...+++.|+.|||+|+ |++++.||+++|+.+++.|.||||+||
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TG 384 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTS 384 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEE
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccC
Confidence 12348899999999999999 554 2245556699999999 999999999999999999999999998
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=6.6e-56 Score=461.90 Aligned_cols=387 Identities=19% Similarity=0.224 Sum_probs=317.4
Q ss_pred CCcccHHHHHHHHHHc-----CCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCch
Q 010867 39 SDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCP 112 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~ 112 (498)
...+++.++|+++++. +||++|+++. ++ ++..+++||+||.++++++|+.|++. |+++||+|+++++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999998 9999999975 42 22347899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhh
Q 010867 113 QWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQ 192 (498)
Q Consensus 113 ~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 192 (498)
++++++|||+++|++++|+++.++.+++.+++++++++++|++......+.+... ..+.++.++.+++...
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVAS-ECPSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGG-GCTTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhh-cCCceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999999999887666544322 2345556666654211
Q ss_pred cCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHH--HhhhhhhhhccccCCCCCCcEEE
Q 010867 193 TGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVYL 270 (498)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~l 270 (498)
.....++++...... ........++++++|+|||||||.||+|+++|. ++. ..... ..+ ++.++|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence 013456666644322 122234567899999999999999999999999 554 33333 333 788999999
Q ss_pred EecChHHHHHHHH-HHHHHHcCcEEEEeC---CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHH
Q 010867 271 SFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFD 346 (498)
Q Consensus 271 ~~~pl~h~~g~~~-~~~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~ 346 (498)
+.+|++|.+++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|++++.+++..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 9999999999985 788899999999885 39999999999999999999999999886420
Q ss_pred HHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccc
Q 010867 347 ALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTV 426 (498)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~ 426 (498)
....+ .++||.+++||+++++++.+++.+.+|+++++.||+||++..++.
T Consensus 316 ----------------------~~~~~--------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ----------------------LSSYK--------FPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ----------------------TTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ----------------------ccccc--------cccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 00001 148999999999999999999999889999999999999876655
Q ss_pred cCCCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEe-----cCCCcccccCCchhhhhhccCCccccC
Q 010867 427 CFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 427 ~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
.... ....+++|+|+++++++|+| +++..++ .|+.|||+|+ |++++.|||++++.|.+.|.+|||+||
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~--~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TG 438 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGNVLP--PGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLG 438 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSCBCC--TTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCCCCC--CCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccc
Confidence 4332 23458999999999999999 7776554 4589999999 999999999999999999999999998
No 14
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.9e-56 Score=460.03 Aligned_cols=386 Identities=20% Similarity=0.233 Sum_probs=306.9
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 118 (498)
..++++.++|+++++ +|+++|+++. + .++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 455679999999999 9999999864 3 48999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCc-cEEEEecCCcHHHHHHHhhcCcce
Q 010867 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIKP 197 (498)
Q Consensus 119 lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~ 197 (498)
|||+++|++++|+++.++.+++.+++++++++++|++......+.+.... .... ..++.++..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALES-AEHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHC-C---CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhh-ccccCceEEEecccccc--------cccc
Confidence 99999999999999999999999999999999999998776554433221 1222 344444432110 0012
Q ss_pred eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhH-HHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010867 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (498)
..++++...... ........++++++++|||||||.||+|+++|.++ .+........+ ++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 246666543211 22223456799999999999999999999999999 56655544444 788999999999999
Q ss_pred HHHHHHH-HHHHHHcCcEEEEeC-C-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010867 277 HILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (498)
Q Consensus 277 h~~g~~~-~~~~l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (498)
|.+++.. ++.++..|+++++.+ . ++..+++.++++++|+++++|+++..+++...
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 293 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN---------------------- 293 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT----------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc----------------------
Confidence 9999976 667899999999873 3 99999999999999999999999988764210
Q ss_pred HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~ 433 (498)
..... ..+||.+++||+++++++.+++++.+|+++++.||+||++++++...... .
T Consensus 294 ------------~~~~~-----------~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 294 ------------LPARA-----------DVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ------------CCCGG-----------GCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ------------ccccc-----------CCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 00000 02799999999999999999999999999999999999977666554443 3
Q ss_pred ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
..+++|+|++|++++|+| ++++.++ .|+.|||+|+|++++.|||++++.+.+.|.+|||+||
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~--~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TG 411 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVP--DGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSG 411 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCC--TTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEE
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCC--CCCccEEEEecCCcccccCCChHHHHHhhhcCCcccC
Confidence 448999999999999999 7776555 4599999999999999999999999999999999998
No 15
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.9e-56 Score=459.68 Aligned_cols=375 Identities=22% Similarity=0.312 Sum_probs=304.0
Q ss_pred HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcC
Q 010867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (498)
Q Consensus 46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G 125 (498)
++|.+.++++|+++++..... ++ +++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~-~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETA-AG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEET-TC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEecC-CC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 468899999999999986310 23 589999999999999999999999999999999999999999999999999
Q ss_pred CeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHHHHHh
Q 010867 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (498)
Q Consensus 126 ~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (498)
++++|+++.++.+++.+++++++++++|++......+....... . ..++.++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987655443322211 1 13344433211 11222221
Q ss_pred ccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHH-H
Q 010867 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (498)
Q Consensus 206 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~ 284 (498)
.. ..........++++++++|||||||.||+|+++|.++.+.+......+ ++.++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112223345689999999999999999999999999999998887777 8899999999999999999765 7
Q ss_pred HHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCC
Q 010867 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (498)
Q Consensus 285 ~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (498)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 788999999998876 9999999998 89999999999998865210
Q ss_pred CchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcC
Q 010867 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (498)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~ 443 (498)
....+ .++||.+++||+++++++.+.+.+.+|+++++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~~~~--------~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKET--------TGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTTT--------TTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----ccccc--------hhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 01111 14899999999999999999999999999999999999987655333 33344589999999
Q ss_pred CceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 444 g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
|++++|+|.+++. +++.|+.|||+|+|++++.|||++|+.+.+.| .||||+||
T Consensus 328 ~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TG 381 (503)
T 4fuq_A 328 GVSARVTDPETGK--ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITG 381 (503)
T ss_dssp TCEEEEECTTTCC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEE
T ss_pred CeEEEEEECCCCC--CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcc
Confidence 9999999944444 44556999999999999999999999999999 69999998
No 16
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.8e-56 Score=465.44 Aligned_cols=366 Identities=20% Similarity=0.189 Sum_probs=303.0
Q ss_pred CCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 010867 37 VDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (498)
Q Consensus 37 ~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~ 116 (498)
..+...++.++|+++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+++++|++++++
T Consensus 70 ~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~ 140 (570)
T 4gr5_A 70 RAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVV 140 (570)
T ss_dssp CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHH
Confidence 3355689999999999999999999875 3 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010867 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (498)
Q Consensus 117 ~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 196 (498)
++|||+++|++++|+++.++.+++.+++++++++++|++......+ .....++..+...
T Consensus 141 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~~------------- 199 (570)
T 4gr5_A 141 ALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEAA------------- 199 (570)
T ss_dssp HHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC----------------
T ss_pred HHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeecccc-------------
Confidence 9999999999999999999999999999999999999998654332 1112221111100
Q ss_pred eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (498)
... ..........++++++|+|||||||.||+|+++|.++.+.+... ..+ ++.++|++++.+|++
T Consensus 200 --------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~ 264 (570)
T 4gr5_A 200 --------SDA-PAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVS 264 (570)
T ss_dssp -------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTT
T ss_pred --------ccc-cccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCcc
Confidence 000 11112234568999999999999999999999999998776552 222 688999999999999
Q ss_pred HHHHHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010867 277 HILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (498)
Q Consensus 277 h~~g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (498)
|..+...++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++....
T Consensus 265 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~--------------------- 323 (570)
T 4gr5_A 265 WDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE--------------------- 323 (570)
T ss_dssp SSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---------------------
Confidence 97777778889999999999863 899999999999999999999999998753110
Q ss_pred HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC-
Q 010867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE- 431 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~- 431 (498)
++ ++||.+++||++++.++.+++.+.+ ++++++.||+||++++++......
T Consensus 324 -------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~ 376 (570)
T 4gr5_A 324 -------------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAG 376 (570)
T ss_dssp -------------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGG
T ss_pred -------------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeeccc
Confidence 01 3899999999999999999998887 789999999999988777554322
Q ss_pred --ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC--------CccccC
Q 010867 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTG 498 (498)
Q Consensus 432 --~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d--------Gw~~TG 498 (498)
.....++|+|++|++++|+| +++..++. |+.|||+|+|++++.|||++++.|++.| .+ |||+||
T Consensus 377 ~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~--G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TG 451 (570)
T 4gr5_A 377 DLSGTALPIGVPLAGKRAYVLD-DDLKPAAN--GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTG 451 (570)
T ss_dssp GTTSSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEE
T ss_pred ccCCCccccceeeCCCEEEEEC-CCCCCCCC--CCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCC
Confidence 22336799999999999999 77765554 5999999999999999999999999998 44 799998
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.2e-55 Score=466.78 Aligned_cols=399 Identities=16% Similarity=0.195 Sum_probs=318.1
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
.+++.++|+++++++||++|+++. +..++..+++||+||.++++++|+.|+++|+++||+|+++++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 467889999999999999999985 33334457999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH---------Hhhccccccc-CCccEEEEecCCcHHHHHHH
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSA-QRLRVMVCFTSLTAEQKEMA 190 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~ 190 (498)
|+++|++++|+++.++.+++.+++++++++++|+++.... .+.+...... ..++.+++++......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---- 227 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI---- 227 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC----
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc----
Confidence 9999999999999999999999999999999999876432 1111111110 2355677765321100
Q ss_pred hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEE
Q 010867 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 269 (498)
.........|++++..... ........++++++|+|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 301 (652)
T 1pg4_A 228 DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY 301 (652)
T ss_dssp CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 0000123467777754321 12233446789999999999999999999999998876643 33344 78899999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010867 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (498)
Q Consensus 270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (498)
++.+|++|..|+.. ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+++....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~----------- 370 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK----------- 370 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG-----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc-----------
Confidence 99999999999955 7889999999999863 789999999999999999999999988652110
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccC
Q 010867 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~ 420 (498)
.....+ .++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 371 ------------------------~~~~~~--------l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 371 ------------------------AIEGTD--------RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp ------------------------GTTTCC--------CTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred ------------------------ccccCC--------cCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 001111 248999999999999999999999888 899999999999
Q ss_pred cccccccCCC-CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc---cCCc
Q 010867 421 CGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDGW 494 (498)
Q Consensus 421 ~~~~~~~~~~-~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f---~dGw 494 (498)
++.++...+. .....+++|+|++|++++|+| +++..++. |+.|||+|+| |+++.|||++++.+.+.| .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCC--CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 9877665443 234558999999999999999 77765544 5899999999 799999999999888876 3899
Q ss_pred cccC
Q 010867 495 FHTG 498 (498)
Q Consensus 495 ~~TG 498 (498)
|+||
T Consensus 496 y~TG 499 (652)
T 1pg4_A 496 YFSG 499 (652)
T ss_dssp EEEE
T ss_pred EECC
Confidence 9998
No 18
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-55 Score=487.57 Aligned_cols=417 Identities=23% Similarity=0.313 Sum_probs=327.0
Q ss_pred CCCCCCCcCCceecCcCCCCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHH
Q 010867 14 GKDGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSAL 93 (498)
Q Consensus 14 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L 93 (498)
..++.+....+|++......+ +...++.++|.+.++++||++|+++. +.. +++||+||.++++++|+.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L 105 (979)
T 3tsy_A 37 KQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANF 105 (979)
T ss_dssp --------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHH
Confidence 334455667778877654333 34589999999999999999999874 322 5899999999999999999
Q ss_pred HHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCc
Q 010867 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL 173 (498)
Q Consensus 94 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 173 (498)
+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+...... ..
T Consensus 106 ~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~ 182 (979)
T 3tsy_A 106 HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---DG 182 (979)
T ss_dssp HHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---SC
T ss_pred HHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---CC
Confidence 999999999999999999999999999999999999999999999999999999999999998776555433221 12
Q ss_pred cEEEEecCCcHHHHHHHhhcCcceeeHHHHHhcccc--ccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh
Q 010867 174 RVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG 251 (498)
Q Consensus 174 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~ 251 (498)
..++.+++... .........++++...... ...+.....++++++|+|||||||.||+|+++|+++++.+..
T Consensus 183 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 256 (979)
T 3tsy_A 183 VVIVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256 (979)
T ss_dssp CEEEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHH
T ss_pred ceEEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHH
Confidence 23444443211 0011123455555543221 122233457899999999999999999999999999988766
Q ss_pred hhhhhccccCCCCCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHH
Q 010867 252 VDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEG 329 (498)
Q Consensus 252 ~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~ 329 (498)
...... ....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.
T Consensus 257 ~~~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 335 (979)
T 3tsy_A 257 QVDGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335 (979)
T ss_dssp HHCSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred HHHhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence 543210 1125788999999999999999976 6778999999999876 999999999999999999999999988652
Q ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-C
Q 010867 330 IKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-C 408 (498)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g 408 (498)
.. ....++ ++||.+++||+++++++.+++.+.| +
T Consensus 336 ~~-------------------------------------~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~ 370 (979)
T 3tsy_A 336 SE-------------------------------------TEKYDL--------SSIRVVKSGAAPLGKELEDAVNAKFPN 370 (979)
T ss_dssp GG-------------------------------------GGTSCC--------TTCCEEEESSCCCCSSHHHHHHHHCTT
T ss_pred cc-------------------------------------ccCCCc--------cceEEEEEcCCCCCHHHHHHHHHHCCC
Confidence 11 111112 4899999999999999999999998 8
Q ss_pred CceEeeeccccCcccccccC----CCCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCch
Q 010867 409 AFLVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPD 484 (498)
Q Consensus 409 ~~l~~~YG~tE~~~~~~~~~----~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~ 484 (498)
+++++.||+||++.+++... .......+++|+|+++++++|+|.+++. +++.|+.|||+|+|++++.|||++|+
T Consensus 371 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~--~~~~g~~GEl~i~g~~v~~GY~~~p~ 448 (979)
T 3tsy_A 371 AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGD--SLSRNQPGEICIRGHQIMKGYLNNPA 448 (979)
T ss_dssp CEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCC--BCCTTCCEEEEEESTTSCSEETTCHH
T ss_pred CeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCC--CCCCCCccEEEEECCCccccccCChh
Confidence 99999999999998766542 1123345889999999999999933344 44556999999999999999999999
Q ss_pred hhhhhc-cCCccccC
Q 010867 485 LTRESI-IDGWFHTG 498 (498)
Q Consensus 485 ~~~~~f-~dGw~~TG 498 (498)
.|++.| .+|||+||
T Consensus 449 ~t~~~f~~~g~~~TG 463 (979)
T 3tsy_A 449 ATAETIDKDGWLHTG 463 (979)
T ss_dssp HHHHHBCTTSCEEEE
T ss_pred hhhhhccCCCcEEcC
Confidence 999999 89999998
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3e-55 Score=464.01 Aligned_cols=400 Identities=18% Similarity=0.199 Sum_probs=317.7
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAME 119 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~g~~V~i~~~n~~~~~~~~l 119 (498)
.+++.++|+++++++|+++|+++. +..++..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 478889999999999999999985 333344579999999999999999999 9999999999999999999999999
Q ss_pred HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH---------HhhcccccccCCccEEEEecCCcHHHHHHH
Q 010867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (498)
Q Consensus 120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 190 (498)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+.+.. ...+.++.+++++...... .
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL-RETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHT-TSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHH-HhCCCCceEEEEecCCCCc---c
Confidence 99999999999999999999999999999999999876432 111111 2224556777765421100 0
Q ss_pred hhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhh-hhhhhccccCCCCCCcEE
Q 010867 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (498)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 269 (498)
.........|+++..... ...+..+..++++++|+|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112346777765432 112233456789999999999999999999999998876643 33344 78899999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHH
Q 010867 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (498)
Q Consensus 270 l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (498)
++.+|++|+.|+.. ++.+|+.|+++++.+. ++..+++.|+++++|+++++|++++.+.+....
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----------- 376 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDS----------- 376 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTT-----------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCcc-----------
Confidence 99999999999955 7889999999999863 789999999999999999999999987541100
Q ss_pred HHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC---CceEeeeccccC
Q 010867 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (498)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g---~~l~~~YG~tE~ 420 (498)
..+..++ ++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 377 ------------------------~~~~~~l--------~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 377 ------------------------YIENHSL--------KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp ------------------------SSSSCCC--------TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred ------------------------ccccCCc--------CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 0011112 48999999999999999999999888 899999999999
Q ss_pred cccccccCC--CCccccCccccCcCCceEEeeecC-CCCCCCCCCCCCCeEEEec--CCCcccccCCchhhhhhc-c--C
Q 010867 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI-I--D 492 (498)
Q Consensus 421 ~~~~~~~~~--~~~~~~~s~G~~~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~f-~--d 492 (498)
++.++.... .....++++|+|++|++++|+| + ++..++. .|+.|||+|+| |+++.|||++++.+.+.| . +
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 977666543 2234558999999999999999 6 6654433 25889999999 589999999999998887 3 8
Q ss_pred CccccC
Q 010867 493 GWFHTG 498 (498)
Q Consensus 493 Gw~~TG 498 (498)
|||+||
T Consensus 503 g~y~TG 508 (663)
T 1ry2_A 503 GYYFTG 508 (663)
T ss_dssp TSEEEE
T ss_pred CEEEcC
Confidence 999998
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=8.7e-56 Score=456.35 Aligned_cols=368 Identities=17% Similarity=0.181 Sum_probs=302.0
Q ss_pred ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 010867 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (498)
Q Consensus 42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~ 121 (498)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47899999999999999999875 3 58999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeHH
Q 010867 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (498)
Q Consensus 122 ~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 201 (498)
+++|++++|+++.++.+++.++++.++++++|++....... .. ..++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LP-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CS-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------cc-cceechh------------------hhh
Confidence 99999999999999999999999999999999985432110 00 1111110 111
Q ss_pred HHHh-ccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010867 202 EFLH-LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (498)
Q Consensus 202 ~~~~-~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (498)
++.. .......+.....++++++++|||||||.||+|+++|.++++.+......+ ++.++|++++.+|++|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 1111 111112223345689999999999999999999999999999998887776 8899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (498)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (498)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|++++.++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 9888899999999999874 89999999999999999999999988754210
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC----
Q 010867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~---- 431 (498)
....+ .++||.+++||+++++++.+++.+.| ++++++.||+||+++.++......
T Consensus 255 ------------~~~~~--------~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSESM--------LPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CSTTT--------STTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccchh--------CccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 01111 14899999999999999999999998 889999999999998777554332
Q ss_pred ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc----CCccccC
Q 010867 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTG 498 (498)
Q Consensus 432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~----dGw~~TG 498 (498)
.....++|+|+++++++|+| +++..++. |+.|||+|+|++++.|||++++.+++.|. +|||+||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 382 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTG 382 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBCCT--TSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCCCC--CCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCC
Confidence 12347899999999999999 77765554 58999999999999999999999999982 5699998
No 21
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.2e-55 Score=453.07 Aligned_cols=367 Identities=17% Similarity=0.207 Sum_probs=307.3
Q ss_pred ccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 010867 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 42 ~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|+.|++. |.++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47899999999999999999874 3 6899999999999999999875 889999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (498)
|+++|++++|+++.++.+++.+++++++++++|++......... . ......+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------c----------------------ccceecH
Confidence 99999999999999999999999999999999997643211100 0 0113445
Q ss_pred HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010867 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (498)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (498)
+++...............++++++++|||||||.||+|+++|.++.+.+......+ ++..+|++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55554432222223345678999999999999999999999999999998877766 8899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (498)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (498)
+..++.++..|+++++.+. ++..+++.++++++|+++++|++++.+++...
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888899999999998864 89999999999999999999999998764210
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC----
Q 010867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~---- 431 (498)
.... ..+++|.+++||+++++++.+++.+.| ++++++.||+||+++.++......
T Consensus 254 ------------~~~~--------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQD--------LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CSTT--------TCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cccc--------cCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 0001 114899999999999999999999998 899999999999998776543321
Q ss_pred ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc--cCC--ccccC
Q 010867 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTG 498 (498)
Q Consensus 432 ~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f--~dG--w~~TG 498 (498)
.....++|+|+|+++++|+| +++..++ .|+.|||+|+|++++.|||++|+.+++.| .+| ||+||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TG 381 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQPLP--EGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTG 381 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCBCC--TTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEE
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCCCC--CCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCC
Confidence 12336799999999999999 7776554 55999999999999999999999999998 455 79998
No 22
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=7e-55 Score=458.95 Aligned_cols=382 Identities=18% Similarity=0.173 Sum_probs=314.6
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
..++.++|.++++ ||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++||
T Consensus 26 ~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA 94 (617)
T 3rg2_A 26 DLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA 94 (617)
T ss_dssp CCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 4789999999887 999999874 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhH----HhhcccccccCCccEEEEecCCcHHHHHHHhhcCcc
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 196 (498)
|+++|++++|+++.++.+++.++++++++++++++..... .............+.+...++...
T Consensus 95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (617)
T 3rg2_A 95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE------------ 162 (617)
T ss_dssp HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST------------
T ss_pred HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc------------
Confidence 9999999999999999999999999999999999876531 111111122244555555544321
Q ss_pred eeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChH
Q 010867 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (498)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~ 276 (498)
..+.+..... .......+..++++++++|||||||.||||+++|.++++.+......+ ++.++|++++.+|++
T Consensus 163 -~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~ 235 (617)
T 3rg2_A 163 -HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPAA 235 (617)
T ss_dssp -TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred -cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccch
Confidence 1233333322 112223445678999999999999999999999999999999888777 889999999999999
Q ss_pred HHHHHHH--HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 010867 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (498)
Q Consensus 277 h~~g~~~--~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (498)
|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|.++..+++.......
T Consensus 236 ~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 297 (617)
T 3rg2_A 236 HNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGES------------------ 297 (617)
T ss_dssp SHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC------------------
T ss_pred hhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccc------------------
Confidence 9999875 7888999999999876 899999999999999999999999998764322100
Q ss_pred HHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcc
Q 010867 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (498)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~ 433 (498)
..+ .++||.+++||+++++++.+++.+.+|+++++.||+||++..++........
T Consensus 298 -----------------~~~--------l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~ 352 (617)
T 3rg2_A 298 -----------------RAQ--------LASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEK 352 (617)
T ss_dssp -----------------TTT--------TTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHHH
T ss_pred -----------------ccc--------CCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcccc
Confidence 001 1489999999999999999999999999999999999998655544333333
Q ss_pred ccCccccCc-CCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 434 ~~~s~G~~~-~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
...++|+|+ ++++++|+| ++++.++. |+.|||+|+|+++++||+++|+.|++.| .+|||+||
T Consensus 353 ~~~~~G~p~~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTG 416 (617)
T 3rg2_A 353 IIHTQGYPMCPDDEVWVAD-AEGNPLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSG 416 (617)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEE
T ss_pred cccCCCccCCCCceEEEEC-CCCCCCCC--CCceEEEecCccccchhcCChhhhhhccCCCCceecC
Confidence 346889997 788999999 77765554 5999999999999999999999999999 89999998
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.6e-55 Score=456.70 Aligned_cols=362 Identities=18% Similarity=0.131 Sum_probs=299.2
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (498)
Q Consensus 40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 119 (498)
...++.++|.+.++++||++|+++. + .++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4579999999999999999999875 3 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (498)
Q Consensus 120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (498)
||+++|++++|++|.++.+++.++++++++++++++....... .....+ .
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~--------------------- 145 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-P--------------------- 145 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-E---------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-e---------------------
Confidence 9999999999999999999999999999999999765432211 011110 0
Q ss_pred HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010867 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (498)
+.... ............++++++++|||||||.||||+++|+++.+.+.. ...+ .+.++|++++.+|++|..
T Consensus 146 ~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 146 VRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp GGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred eccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 00000 001111222346799999999999999999999999999887765 3333 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEeCC---ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010867 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (498)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (498)
++..++.++..|+++++.+. ++..+.+.++++++|+++++|++++.+++...
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------- 272 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------- 272 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-------------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-------------------------
Confidence 99889999999999998642 89999999999999999999999998865210
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC---c
Q 010867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~---~ 432 (498)
.++ ++||.+++||+++++++.+++.+.+ ++++++.||+||++.+++...... .
T Consensus 273 ---------------~~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 273 ---------------DCL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp ---------------GGG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred ---------------hhC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 001 3899999999999999888887766 889999999999998776543322 2
Q ss_pred cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-cC-------CccccC
Q 010867 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID-------GWFHTG 498 (498)
Q Consensus 433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~d-------Gw~~TG 498 (498)
....++|+|++|++++|+| +++.. .++.|+.|||+|+|+++++||+++|+.|++.| .+ +||+||
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTG 401 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTG 401 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEE
T ss_pred CCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCC
Confidence 3347899999999999999 76664 23456899999999999999999999999999 43 799998
No 24
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.8e-54 Score=449.01 Aligned_cols=363 Identities=19% Similarity=0.233 Sum_probs=297.8
Q ss_pred CcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 010867 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (498)
Q Consensus 40 ~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~l 119 (498)
...++.++|.+.++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~l 107 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999864 3 589999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceee
Q 010867 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (498)
Q Consensus 120 A~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 199 (498)
||+++|++++|+++.++.+++.+++++++++++|++......+.... ....+..++....
T Consensus 108 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~--------------- 167 (563)
T 1amu_A 108 AVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI--------------- 167 (563)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT---------------
T ss_pred HHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh---------------
Confidence 99999999999999999999999999999999999987655443211 1112333322100
Q ss_pred HHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHH
Q 010867 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (498)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~ 279 (498)
... .......+..++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|..
T Consensus 168 ----~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 236 (563)
T 1amu_A 168 ----KIR--EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFDA 236 (563)
T ss_dssp ----TTS--CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTSTH
T ss_pred ----ccc--cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHHH
Confidence 000 111112334678999999999999999999999999998888776665 788999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010867 280 DRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (498)
Q Consensus 280 g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (498)
++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 237 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------------------------- 290 (563)
T 1amu_A 237 SVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE-------------------------- 290 (563)
T ss_dssp HHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------------------------
T ss_pred HHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------------------------
Confidence 98888889999999998764 889999999999999999999998765320
Q ss_pred HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC--cc
Q 010867 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--MC 433 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~--~~ 433 (498)
..++||.+++||+++++++.+++.+. +++++.||+||++.+++...... ..
T Consensus 291 -------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~~~~~~ 343 (563)
T 1amu_A 291 -------------------------RILSIQTLITAGSATSPSLVNKWKEK--VTYINAYGPTETTICATTWVATKETIG 343 (563)
T ss_dssp -------------------------TCCSCSEEEEESSCCCHHHHHHHTTT--SEEEEEECCGGGSSCSEEEECCSSCCC
T ss_pred -------------------------ccccccEEEEEEecCCHHHHHHHHhC--CeEEEEECcCHHhHhheeeecccccCC
Confidence 01389999999999999999998774 78999999999988766544322 22
Q ss_pred ccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhcc-------CCccccC
Q 010867 434 MVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTG 498 (498)
Q Consensus 434 ~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~-------dGw~~TG 498 (498)
...++|+|+++++++|+| +++..++ .|+.|||+|+|++++.|||++|+.|++.|. +|||+||
T Consensus 344 ~~~~vG~p~~~~~v~i~d-~~~~~~~--~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TG 412 (563)
T 1amu_A 344 HSVPIGAPIQNTQIYIVD-ENLQLKS--VGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTG 412 (563)
T ss_dssp SSCCCBEECTTEEEEEEC-TTSCBCC--TTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEE
T ss_pred CCCcccceeCCCEEEEEC-CCcCCCC--CCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecC
Confidence 447899999999999999 7776555 458999999999999999999999999983 3599998
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=9.2e-55 Score=449.82 Aligned_cols=368 Identities=17% Similarity=0.135 Sum_probs=300.9
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
+.++.++|+++++++|+++|+.+. + +++||+||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999874 3 5899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (498)
|+++|++++|+++.++.+++.++++.++++++|++.+....+. .. . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--------~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--------GI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--------TS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--------cC-c---------------------ccch
Confidence 9999999999999999999999999999999999876432211 11 1 1122
Q ss_pred HHHHhcc--ccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHH
Q 010867 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (498)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~ 278 (498)
.++.... ...........++++++++|||||||.||+|+++|.++++.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2222111 0111223345689999999999999999999999999998877655431 1267889999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 010867 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (498)
Q Consensus 279 ~g~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (498)
.++..++.++..|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 998888889999999998764 88999999999999999999999988754110
Q ss_pred HHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc-CCceEeeeccccCcccccccCCCC--
Q 010867 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (498)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-g~~l~~~YG~tE~~~~~~~~~~~~-- 431 (498)
....+ .++||.+++||+++++++.+++.+.+ ++++++.||+||+++.++......
T Consensus 258 --------------~~~~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQAK--------MPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CSTTT--------CTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------ccccc--------CccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 00011 14899999999999999999999988 899999999999988776543321
Q ss_pred --ccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc----cCCccccC
Q 010867 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTG 498 (498)
Q Consensus 432 --~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f----~dGw~~TG 498 (498)
.....++|+|+|+++++|+| +++..++. |+.|||+|+|++++.|||++++.+++.| .+|||+||
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TG 385 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKELSS--GEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTG 385 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBCCT--TCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEE
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCCCC--CCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCC
Confidence 12336899999999999999 77765554 5899999999999999999999999988 35799998
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=4.1e-54 Score=450.80 Aligned_cols=387 Identities=19% Similarity=0.236 Sum_probs=309.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 010867 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (498)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~ 111 (498)
..++...+...++.++|+++++.+|+.+++... .+..+++||+||.++++++|+.|+++|+++||+|+++++|+
T Consensus 11 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~~------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 84 (576)
T 3gqw_A 11 HSLPMRYADFPTLVDALDYAALSSAGMNFYDRR------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETS 84 (576)
T ss_dssp ---CCCCSCCSSHHHHHHHHTTSSCEEEEECTT------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSS
T ss_pred CCCCcccCCCCcHHHHHHHHhhCCCCeEEeCCC------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCc
Confidence 345555577899999999999999998777432 22236899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCeEeecCCCCC-------hhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcH
Q 010867 112 PQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA 184 (498)
Q Consensus 112 ~~~~~~~lA~~~~G~~~~~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 184 (498)
++++++++||+++|++++|+++.++ .+++.++++.++++++|++.+....+....... +... +
T Consensus 85 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~-~-------- 154 (576)
T 3gqw_A 85 SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PELH-V-------- 154 (576)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTCE-E--------
T ss_pred HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccce-e--------
Confidence 9999999999999999999999998 789999999999999999988766554332211 1111 1
Q ss_pred HHHHHHhhcCcceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhh-hccccCCC
Q 010867 185 EQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFEDKM 263 (498)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~-~~~~~~~~ 263 (498)
....... .............++++++++|||||||.||+|+++|.++++.+...... + ++
T Consensus 155 -------------~~~~~~~-~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~ 215 (576)
T 3gqw_A 155 -------------LSHAWFK-ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI-----KL 215 (576)
T ss_dssp -------------EEHHHHH-TSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS-----CC
T ss_pred -------------cchhhhh-cccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc-----CC
Confidence 1111111 11111222334568999999999999999999999999999888776443 3 78
Q ss_pred CCCcEEEEecChHHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhh
Q 010867 264 TVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (498)
Q Consensus 264 ~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (498)
.++|++++++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|.+++.+.+.....
T Consensus 216 ~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---- 291 (576)
T 3gqw_A 216 RPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK---- 291 (576)
T ss_dssp CTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH----
T ss_pred CCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc----
Confidence 89999999999999999986 6667899999988763 8899999999999999999999998875532111
Q ss_pred chHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhc------CCce
Q 010867 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFL 411 (498)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------g~~l 411 (498)
.....+ .++||.+++||+++++++.+++.+.+ +.++
T Consensus 292 ------------------------------~~~~~~--------l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (576)
T 3gqw_A 292 ------------------------------DLAELD--------LSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTF 333 (576)
T ss_dssp ------------------------------HHTTCC--------CTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGE
T ss_pred ------------------------------ccccCC--------hhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcccc
Confidence 111111 24899999999999999999999887 6789
Q ss_pred EeeeccccCcccccccCCCCc---------------------------cccCccccCcCCceEEeeecCCCCCCCCCCCC
Q 010867 412 VQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPP 464 (498)
Q Consensus 412 ~~~YG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~ 464 (498)
++.||+||++.+++....... ....++|+|+|+++++|+| +++..++. |+
T Consensus 334 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~--g~ 410 (576)
T 3gqw_A 334 MPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAE--RV 410 (576)
T ss_dssp EEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCT--TB
T ss_pred cccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCC--CC
Confidence 999999999988776543210 1113799999999999999 77765554 58
Q ss_pred CCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 465 CGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 465 ~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
.|||+|+|++++.|||++++.+.+.+.+|||+||
T Consensus 411 ~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TG 444 (576)
T 3gqw_A 411 VGHICISGPSLMSGYFGDQVSQDEIAATGWLDTG 444 (576)
T ss_dssp CEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEE
T ss_pred eEEEEEeCccccccccCCccccccccCCCeeecc
Confidence 9999999999999999999988887799999998
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.3e-54 Score=453.90 Aligned_cols=384 Identities=17% Similarity=0.247 Sum_probs=307.0
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 010867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~ 118 (498)
....++.++|+++++.+||++|+++. ++ +..+++||+||.++++++|+.|++.|+++||+|+++++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999886 42 22369999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeEeecCCCC---ChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCc
Q 010867 119 EACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (498)
Q Consensus 119 lA~~~~G~~~~~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 195 (498)
|||+++|++++|+++.+ +.+++.++++.+++++++++......+........+....+..+
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 146 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAI---------------- 146 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEE----------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccccee----------------
Confidence 99999999999999988 45789999999999999999887766543321111111111111
Q ss_pred ceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh
Q 010867 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (498)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl 275 (498)
..+++.... ..........++++++|+|||||||.||+|+++|.++++.+......+ ++.++|++++++|+
T Consensus 147 ---~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 147 ---ALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ---EGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ---echhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 111111111 111223345789999999999999999999999999999999887777 88999999999999
Q ss_pred HHHHHHHH-HHHHHHcCcEEEEeCC-----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010867 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (498)
Q Consensus 276 ~h~~g~~~-~~~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (498)
+|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+++.+...
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~---------------- 281 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREE---------------- 281 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGG----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhh----------------
Confidence 99999987 7888999999999864 7899999999999999999999999887632111
Q ss_pred HHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC------CceEeeeccccCccc
Q 010867 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGLTETCGP 423 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g------~~l~~~YG~tE~~~~ 423 (498)
.....++ ++||.+++||+++++++.+++.+.|+ .++++.||+||++++
T Consensus 282 ------------------~~~~~~l--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 282 ------------------KKEGLDL--------SSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp ------------------GGTTCCC--------TTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred ------------------hccCCCc--------hhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 0111112 48999999999999999999998873 379999999999987
Q ss_pred ccccCCC--------------------------CccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcc
Q 010867 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (498)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~ 477 (498)
++..... ......++|+|+++ ++|+| +++ ..+++.|+.|||+|+|++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence 7754321 11234689999998 88888 553 245556699999999999999
Q ss_pred cccCCchhhhhhccC-------C--ccccC
Q 010867 478 GYYKNPDLTRESIID-------G--WFHTG 498 (498)
Q Consensus 478 gY~~~~~~~~~~f~d-------G--w~~TG 498 (498)
|||++|+.|++.|.+ | ||+||
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TG 441 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTG 441 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecC
Confidence 999999999999943 6 99998
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-54 Score=445.47 Aligned_cols=376 Identities=20% Similarity=0.223 Sum_probs=294.9
Q ss_pred cHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHH
Q 010867 43 TAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACN 122 (498)
Q Consensus 43 tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~ 122 (498)
|+.++|.++++++||++|+++. + +++||+||.++++++|+.|++. +||+|+++++|+++++++++||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 5678999999999999999864 3 4899999999999999999986 89999999999999999999999
Q ss_pred HcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcce-eeHH
Q 010867 123 ALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSWD 201 (498)
Q Consensus 123 ~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~ 201 (498)
++|++++|+++.++.+++.+++++++++++|++............ ......+.......... ........ ...+
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccchh
Confidence 999999999999999999999999999999999875543322111 01111111100000000 00000000 0011
Q ss_pred HHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHH
Q 010867 202 EFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDR 281 (498)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~ 281 (498)
.+...............++++++++|||||||.||+|+++|.++++.+......+ ++.++|++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111122345689999999999999999999999999999998887776 88999999999999999999
Q ss_pred HHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccc
Q 010867 282 VIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGY 360 (498)
Q Consensus 282 ~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (498)
..++.++..|+++++.+. ++..+++.++++++|+++++|++++.+++....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 988889999999999876 999999999999999999999999998653110
Q ss_pred CCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCC-ccccCccc
Q 010867 361 KQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTAG 439 (498)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~-~~~~~s~G 439 (498)
. ..+||.+++||+++++++.+++.+ +++++++.||+||+++.++...... ....+++|
T Consensus 272 -----~---------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 -----E---------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp -----S---------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred -----C---------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0 027899999999999999999987 5999999999999987655443322 23458899
Q ss_pred cCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 440 PVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 440 ~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
+|+++++++|+| ++ .++.|||+|+|++++.||+++++.+.+ |.+|||+||
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TG 380 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTG 380 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecC
Confidence 999999999999 44 236799999999999999999999987 899999998
No 29
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2e-54 Score=444.64 Aligned_cols=364 Identities=26% Similarity=0.299 Sum_probs=293.0
Q ss_pred CCcccHHHHHHHHHHcCCC-CCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 010867 39 SDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~ 117 (498)
.++.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|..|. .|++|+++++|+++++++
T Consensus 19 ~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~ 84 (505)
T 3nyq_A 19 SHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVA 84 (505)
T ss_dssp -----CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHH
T ss_pred cccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHH
Confidence 4578999999999999987 9999874 3 68999999999999998774 488999999999999999
Q ss_pred HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcce
Q 010867 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (498)
Q Consensus 118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 197 (498)
++||+++|++++|+++.++.+++.+++++++++++|++..... ......... +.++..
T Consensus 85 ~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~-~~~~~~--------------- 142 (505)
T 3nyq_A 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALER-VDVDVR--------------- 142 (505)
T ss_dssp HHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEE-EECCTT---------------
T ss_pred HHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhccccc-cccccc---------------
Confidence 9999999999999999999999999999999999999865210 001111111 111110
Q ss_pred eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHH
Q 010867 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 277 (498)
.....+.....++++++++|||||||.||+|+++|.++.+.+......+ ++.++|++++.+|++|
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~ 207 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFH 207 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTS
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHH
Confidence 0111122345678999999999999999999999999999999888777 8899999999999999
Q ss_pred HHHHHH-HHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010867 278 ILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (498)
Q Consensus 278 ~~g~~~-~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (498)
..|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+++......
T Consensus 208 ~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~--------------------- 265 (505)
T 3nyq_A 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP--------------------- 265 (505)
T ss_dssp HHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH---------------------
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc---------------------
Confidence 999876 7889999999998876 899999999 8899999999999999876432110
Q ss_pred HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCcccc
Q 010867 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMV 435 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~ 435 (498)
....+++ ++|.+++||+++++++.+++.+.+|+++++.||+||++..++...... ...
T Consensus 266 -------------~~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~ 323 (505)
T 3nyq_A 266 -------------ELAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRA 323 (505)
T ss_dssp -------------HHHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCT
T ss_pred -------------hhhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCC
Confidence 0112233 899999999999999999999999999999999999987766554433 344
Q ss_pred CccccCcCCceEEeeecCCCCCCCC-CCCCCCeEEEecCCCcccccCCchhhhhhc-cCCccccC
Q 010867 436 GTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTG 498 (498)
Q Consensus 436 ~s~G~~~~g~~i~ivd~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~dGw~~TG 498 (498)
+++|+|++|++++|+| +++..++. +.|+.|||+|+|++++.|||++|+.|++.| .||||+||
T Consensus 324 ~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TG 387 (505)
T 3nyq_A 324 GTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTG 387 (505)
T ss_dssp TCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEE
T ss_pred CCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccC
Confidence 8999999999999999 77776665 346899999999999999999999999999 79999998
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.4e-53 Score=444.81 Aligned_cols=382 Identities=17% Similarity=0.128 Sum_probs=301.5
Q ss_pred CCcccHHHHHHHHHHcCCCCCceeeccccCC----CCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 010867 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (498)
Q Consensus 39 ~~~~tl~~~l~~~~~~~pd~~a~~~~~~~d~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~ 114 (498)
....++.++|+++++++||++|+++. ++ ..+..+++||+||.++++++|+.|++.|+ +||+|+++++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45678999999999999999999875 32 11223689999999999999999999999 799999999999999
Q ss_pred HHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcC
Q 010867 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (498)
Q Consensus 115 ~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 194 (498)
++++|||+++|++++|+++.++.+++.+++++++++++|+++.....+. ......++....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~------------- 153 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN------------- 153 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC-------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc-------------
Confidence 9999999999999999999999999999999999999999876543221 111222222211
Q ss_pred cceeeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhc---cccCCCCCCcEEEE
Q 010867 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS 271 (498)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~l~ 271 (498)
..+.+..... ..........++++++|+|||||||.||+|+++|.++.+.+..+...+. .....+...+++++
T Consensus 154 ---~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 154 ---QSFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ---HHHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ---hhhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 1122222211 1111223345788999999999999999999999999988776554321 11124778899999
Q ss_pred ecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 010867 272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (498)
Q Consensus 272 ~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (498)
..|+.|..++..++.++..|+++++.+. .+..+.+.++++++|+++++|++++.+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------- 289 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------- 289 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence 9999999998888889999999988765 467889999999999999999987764210
Q ss_pred HHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCC
Q 010867 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (498)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~ 429 (498)
+ .+ .++||.+++||+++++++.+++++.+++++++.||+||++..++....
T Consensus 290 -----------------~----~~--------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 340 (562)
T 3ite_A 290 -----------------P----ED--------APHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI 340 (562)
T ss_dssp -----------------G----GG--------STTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred -----------------c----cc--------cCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence 0 01 148999999999999999999999889999999999999887776655
Q ss_pred CCccccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCC--ccccC
Q 010867 430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTG 498 (498)
Q Consensus 430 ~~~~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dG--w~~TG 498 (498)
......+++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.|||++|+.+...+.+| ||+||
T Consensus 341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TG 409 (562)
T 3ite_A 341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTG 409 (562)
T ss_dssp CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEE
T ss_pred cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecC
Confidence 4444457899999999999999 4433 445566999999999999999999999988777777 99998
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=6.9e-51 Score=461.07 Aligned_cols=366 Identities=19% Similarity=0.222 Sum_probs=303.0
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA 120 (498)
..++.++|.+.++++||++|+++. + .++||+||.++++++|+.|++.|+++|++|+|+++|+++++++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 3 4899999999999999999999999999999999999999999999
Q ss_pred HHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcHHHHHHHhhcCcceeeH
Q 010867 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (498)
Q Consensus 121 ~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 200 (498)
|+++|++++||+|.++.+++.++++++++++++++......+.+ .+.....+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc----------------
Confidence 99999999999999999999999999999999999865443211 112223333332110
Q ss_pred HHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHH
Q 010867 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (498)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g 280 (498)
+. . ....+.....+++++|++|||||||.||||+++|+++.+. ......+ ++.++|+++...|+.|..+
T Consensus 593 --~~-~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 593 --FE-E--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp --GG-S--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred --cc-c--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 0 1111223456889999999999999999999999999876 3333333 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEeCC----ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 010867 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (498)
Q Consensus 281 ~~~~~~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (498)
...++.++..|+++++.+. ++..+.+.|+++++|+++++|++++.+.+...
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~------------------------- 716 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE------------------------- 716 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-------------------------
Confidence 8889999999999999864 89999999999999999999999998864210
Q ss_pred hcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcC-CceEeeeccccCcccccccCCCC---c
Q 010867 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC-AFLVQGYGLTETCGPTTVCFPDE---M 432 (498)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g-~~l~~~YG~tE~~~~~~~~~~~~---~ 432 (498)
..+ ++||.+++||+++++++.+++.+.++ .+++|.||+||++.+++...... .
T Consensus 717 ---------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 717 ---------------DWM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ---------------HHH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ---------------hcC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 011 28999999999999999999988774 68999999999998777654322 2
Q ss_pred cccCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhc-c------CCccccC
Q 010867 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTG 498 (498)
Q Consensus 433 ~~~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f-~------dGw~~TG 498 (498)
....++|+|++|++++|+| +++..+|. |+.|||+|+|+++++||+|+|+.|++.| . ++||+||
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~p~--G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTG 843 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQPF--GAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTG 843 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBCCT--TCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEE
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCCCC--CCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecC
Confidence 2336899999999999999 77765554 5899999999999999999999999998 3 3499998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=6.8e-31 Score=257.11 Aligned_cols=191 Identities=18% Similarity=0.107 Sum_probs=161.2
Q ss_pred CCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeC
Q 010867 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (498)
Q Consensus 219 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~ 298 (498)
.++++||+|||||||.||+|+++|+++++.+......+ +++++|++++.+|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 36789999999999999999999999999999888777 8999999999999999999998889999999998876
Q ss_pred CChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHH
Q 010867 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (498)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (498)
.. ...++.++++++|+++++|++++.+++.... ..++
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 42 2345678999999999999999998752110 0112
Q ss_pred HHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCcccccccCCCCccccCccccCcCCceEEeeecCCCCCC
Q 010867 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (498)
Q Consensus 379 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~~~~~~~~~~~~~~s~G~~~~g~~i~ivd~~~~~~~ 458 (498)
++||.+++||+++++++.+++++ +++++++.||+||+++.++......... +++|.+.||+++++.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 38999999999999999999987 5999999999999998887776554433 8899999999988755
Q ss_pred CCCCCCCCeEEEecCCCc
Q 010867 459 PLDDPPCGEVCVRGKTLF 476 (498)
Q Consensus 459 ~~~~~~~Gei~v~g~~v~ 476 (498)
.|||+++|+.+.
T Consensus 215 ------~Gel~~~g~~~~ 226 (358)
T 4gs5_A 215 ------RGCLHISGAVTN 226 (358)
T ss_dssp ------TSEEEEESGGGT
T ss_pred ------cCceEEeccccc
Confidence 599999987543
No 33
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=4.2e-30 Score=253.36 Aligned_cols=226 Identities=17% Similarity=0.163 Sum_probs=176.9
Q ss_pred CCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEEE
Q 010867 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (498)
Q Consensus 217 ~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~~ 295 (498)
..++++++++|||||||.||+|+++|.++..........+. ..++.++|++++.+|+ +|..|+...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 36788999999999999999999999999988875432221 1267889999999999 99999988787899999443
Q ss_pred EeCCChH-----------------------hHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 010867 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (498)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (498)
....++. .+++.++++++|+++++|+++..|++...
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--------------------- 224 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--------------------- 224 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH---------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh---------------------
Confidence 3333666 78889999999999999999999876321
Q ss_pred HHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHH-Hhc-CCceEeeeccccCcccccccCCC
Q 010867 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (498)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-g~~l~~~YG~tE~~~~~~~~~~~ 430 (498)
....+++ +||.+++||+++++++.++++ +.| ++++++.||+||+++++..+..
T Consensus 225 ----------------~~~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 225 ----------------VVLQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ----------------HHHHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ----------------hhccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 1112233 899999999999999999999 899 8999999999999876533321
Q ss_pred CccccCccccC------cCCceEEeeecC-CCCCCCCCCCCCCeEEEecC---CCcccccCCchhhhhhccCCccccC
Q 010867 431 EMCMVGTAGPV------SVYSELRLEEVP-EMGYSPLDDPPCGEVCVRGK---TLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 431 ~~~~~~s~G~~------~~g~~i~ivd~~-~~~~~~~~~~~~Gei~v~g~---~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
.++|++ +|+++++|+| + +++ +++.|+.|||+|++. .++.+|...+..+.....+||+.+|
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~--~vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~ 349 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITAQ--TVEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDR 349 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTCS--BCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCCc--CCCCCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcc
Confidence 248999 9999999999 5 555 445669999999973 3467898777766666688998775
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=8.3e-30 Score=257.01 Aligned_cols=220 Identities=15% Similarity=0.125 Sum_probs=171.3
Q ss_pred CCCC-CCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHH-HHHHHHHcCcE
Q 010867 216 PPQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGAS 293 (498)
Q Consensus 216 ~~~~-~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~ 293 (498)
...+ +++++++|||||||.||+|+++|.++.+....+...+.. .++.++|++++.+|+.|..+.. .++.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3445 889999999999999999999999998776655332211 2678999999999987655554 47778999999
Q ss_pred EEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHH
Q 010867 294 VGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLL 372 (498)
Q Consensus 294 ~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (498)
+++.+. ++..+++.|+++++|+++++|+++..+++.........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 998765 99999999999999999999999999987543221100
Q ss_pred HHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccccCccccCcCCceEEeee
Q 010867 373 AFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEE 451 (498)
Q Consensus 373 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~~~s~G~~~~g~~i~ivd 451 (498)
..++||.+++||+++++++.+++++.||+++++.||+||+++. +...... . ...|.+.++++++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~---~-~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE---Q-NGMHFWEDCYLVEIID 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT---C-SSEEECTTTEEEEEEC
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC---C-CeeEEccCceEEEEEE
Confidence 0148999999999999999999999999999999999999654 3333221 1 3467788899999999
Q ss_pred cCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 452 VPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 452 ~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
++++. +++.|+.|||+|+|. +.+.|.+|||+||
T Consensus 272 ~~~g~--~~~~g~~Gel~v~~~------------~~~~~~~~~y~TG 304 (436)
T 3qov_A 272 PETGE--PVPEGEIGELVLTTL------------DREMMPLIRYRTR 304 (436)
T ss_dssp TTTCS--BCSTTCCEEEEEEES------------SCCSSCCCSEEEE
T ss_pred CCCCC--CCCCCCceEEEEecc------------CcCCceEEEEEcC
Confidence 44454 445669999999983 2344567888887
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.96 E-value=3e-29 Score=252.99 Aligned_cols=220 Identities=19% Similarity=0.150 Sum_probs=171.9
Q ss_pred CCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCcEE
Q 010867 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (498)
Q Consensus 216 ~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~h~~g~~~~~~~l~~G~~~ 294 (498)
...++++++++|||||||.||+|+++|.++......+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 3466889999999999999999999999988776544331111 267899999999998 6888887788889999999
Q ss_pred EEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHH
Q 010867 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (498)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (498)
++.+. ++..+++.|+++++|+++++|+++..+++......... +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------~ 208 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------------------------V 208 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------G
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 87766 99999999999999999999999999876543211000 0
Q ss_pred HHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccccCccccCcCCceEEeeec
Q 010867 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (498)
Q Consensus 374 ~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~~~s~G~~~~g~~i~ivd~ 452 (498)
.++||.+++||+++++++.+++++.||+++++.||+||+++. +........ ..++.+.++++++|+|
T Consensus 209 --------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d- 276 (437)
T 2y27_A 209 --------QSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID- 276 (437)
T ss_dssp --------GSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC-
T ss_pred --------cCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc-
Confidence 138999999999999999999999899999999999998543 333322111 1366778999999999
Q ss_pred CC-CCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 453 PE-MGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 453 ~~-~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
++ +. +++.|+.|||+|+|. +.+.|.+|||+||
T Consensus 277 ~~~g~--~~~~g~~Gel~v~~~------------t~~~~~~~~y~TG 309 (437)
T 2y27_A 277 PETGE--VLPDGELGELVFTSL------------TKEALPIIRYRTR 309 (437)
T ss_dssp TTTCC--BCCTTCCEEEEEEES------------SCSSSCCCSEEEE
T ss_pred CCCCC--CCCCCCccEEEEecC------------CcCCchhheeecC
Confidence 54 44 455669999999983 3344667899987
No 36
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=6.3e-29 Score=251.09 Aligned_cols=236 Identities=15% Similarity=0.104 Sum_probs=176.7
Q ss_pred eeHHHHHhccccccccCCCCCCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecCh-H
Q 010867 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-A 276 (498)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl-~ 276 (498)
.+.+++.... +.......++++++++|||||||.||+|+++|.++......+...+.. .++.++|++++.+|+ .
T Consensus 73 ~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 73 STKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGL 147 (443)
T ss_dssp BCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSS
T ss_pred CcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcc
Confidence 3455555432 112233466889999999999999999999999988766554331111 268899999999998 5
Q ss_pred HHHHHHHHHHHHHcCcEEEEeCC-ChHhHHHHHhhhCCcEEEecchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 010867 277 HILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAW 355 (498)
Q Consensus 277 h~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (498)
|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------ 209 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP------------------ 209 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc------------------
Confidence 77777778888999999988776 99999999999999999999999999876543211000
Q ss_pred HhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHHHHHHhcCCceEeeeccccCccc-ccccCCCCccc
Q 010867 356 MNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCM 434 (498)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~g~~l~~~YG~tE~~~~-~~~~~~~~~~~ 434 (498)
+ .++||.+++||+++++++.+++++.||+++++.||+||+++. +........
T Consensus 210 -----------------~--------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~-- 262 (443)
T 2y4o_A 210 -----------------A--------ESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK-- 262 (443)
T ss_dssp -----------------G--------GSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC--
T ss_pred -----------------c--------cCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC--
Confidence 0 138999999999999999999999899999999999998543 333322111
Q ss_pred cCccccCcCCceEEeeecCCCCCCCCCCCCCCeEEEecCCCcccccCCchhhhhhccCCccccC
Q 010867 435 VGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTG 498 (498)
Q Consensus 435 ~~s~G~~~~g~~i~ivd~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~f~dGw~~TG 498 (498)
...+.+.++++++|+|.+++. +++.|+.|||+|+|. +.+.|.+|||+||
T Consensus 263 -~g~~~~~~~~~~~i~d~~~g~--~~~~G~~Gel~v~~~------------t~~~~p~~~y~TG 311 (443)
T 2y4o_A 263 -DGPVIWEDHFYPEIIDPVTGE--VLPDGSQGELVFTSL------------TKEAMPVIRYRTR 311 (443)
T ss_dssp -CSEEECTTTEEEEEECTTTCC--BCCTTCCEEEEEEES------------SCSSSCCSSEEEE
T ss_pred -CceEEccCCeEEEEEcCCCCC--CCCCCCceEEEEeCC------------CcccChhheeecC
Confidence 125567789999999932344 444668999999983 3344567899987
No 37
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=93.88 E-value=0.86 Score=44.71 Aligned_cols=126 Identities=14% Similarity=0.056 Sum_probs=91.2
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~ 130 (498)
.++.++.+... .|.+|.+ ..+|...+...+..++..+...|+.++|++....+.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34556655442 4556654 4679999988888888878788999999999888853 3445567888999999987
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccc-----ccCCccEEEEecCCc
Q 010867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSLT 183 (498)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~~ 183 (498)
++.. ..+.+...+++.++.+++........+.+.... ....++.+++-+..-
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 222 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPW 222 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccC
Confidence 7654 788889999999999999988877666543221 125677777766543
No 38
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=93.70 E-value=0.84 Score=44.75 Aligned_cols=124 Identities=8% Similarity=-0.046 Sum_probs=91.2
Q ss_pred CCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHHcCCeEeecC
Q 010867 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (498)
Q Consensus 57 d~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~l~ 132 (498)
+.++++... .|.+|.+ ..+|...+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 445554432 4556654 4679999999888888888888999999999988743 344556788899999988776
Q ss_pred CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccc-----cCCccEEEEecCCc
Q 010867 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRS-----AQRLRVMVCFTSLT 183 (498)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~ 183 (498)
.. .++.+...+++.++.+++........+.+..... ...++.++.-+..-
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 218 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPH 218 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcC
Confidence 54 6788889999999999999888777665442211 35677777766553
No 39
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.32 E-value=0.93 Score=44.52 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=91.2
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~--~~~~~~~lA~~~~G~~~~~ 130 (498)
.++.++.+... .|.+|.++ .+|...+...+..++..+...|+.++|++....+.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34555544432 56666654 678999988888888878788999999999888853 3445567888899999888
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccc-----ccCCccEEEEecCCc
Q 010867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSLT 183 (498)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-----~~~~~~~vi~~~~~~ 183 (498)
++.. ..+.+...+++.++.+++........+.+.... ....++.+++-+..-
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l 224 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPW 224 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcC
Confidence 7664 788888999999999999988877665543221 125677777766553
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=93.05 E-value=1.9 Score=43.64 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.8
Q ss_pred CCCCeEEEEeccCCC-CCCceEEeccHhHHHH
Q 010867 218 QPFNICTIMYTSGTS-GDPKGVVLTHETIATF 248 (498)
Q Consensus 218 ~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~ 248 (498)
.++.+.+..-||||| |.+|.+++|...+-..
T Consensus 91 ~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 91 SARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 456677899999999 7799999999876553
No 41
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=88.96 E-value=6.3 Score=39.16 Aligned_cols=122 Identities=8% Similarity=0.022 Sum_probs=87.2
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l 131 (498)
.++.+|++... .|.+|.+ ..+|+..+...+..+.. ..++.++|++...+|-... .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46677766652 4555554 46788888877666544 3488999999888876533 234467788899988877
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCC
Q 010867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (498)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 182 (498)
+ ...++.+...+++.++.+++........+.+........++.++.-+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4678999999999999999999888877765543333366777666554
No 42
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=86.50 E-value=2.9 Score=39.72 Aligned_cols=124 Identities=13% Similarity=0.016 Sum_probs=81.8
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCC--chhHHHHHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGAN--CPQWVEAMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n--~~~~~~~~lA~~~~G~~~~~ 130 (498)
.++.++.+... .|.+|.++ .+|...+...+..++..+...|+.++|++..+++- +.......+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 34555655542 46666654 56888888888777777777899999999998886 23334455666889986555
Q ss_pred cCCCCChh-----------------------HHHHHHhhcCccEEEEcCchhHHhhcccc---cccCCccEEEEecCC
Q 010867 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (498)
Q Consensus 131 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 182 (498)
.. ..+. ++...+++.++.+++........+.+... .....++.++.-+..
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 242 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTE 242 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSC
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCcc
Confidence 43 3344 66668899999999998887776655421 223456667666654
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=84.49 E-value=16 Score=36.59 Aligned_cols=122 Identities=7% Similarity=-0.075 Sum_probs=85.5
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHHcCCeEe
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICV 129 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~ 129 (498)
.|+.+|++... .|.+|.+ ..+|.+.+...+...... .++.++|++...+|-+..+-. .+++.+..|+.++
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 45667766652 4555544 478999887776655443 478899998888876544322 4788888999988
Q ss_pred ecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCC
Q 010867 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 130 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (498)
..+ ...++.+...+++.++.+++........+.+.. ......++.+++-+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 765 467888999999999999999887776654432 2234567777766654
No 44
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=81.92 E-value=11 Score=37.97 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=83.3
Q ss_pred CCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHHcCCeEeecC
Q 010867 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (498)
Q Consensus 57 d~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l~ 132 (498)
+.+|++... .|.+|.+ ..+|++.+...+......+...++.++|++...++-+..+ ...+++.+ .|+.++.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 666766552 3555543 4789998887766655443335788999988887765443 23356667 999888775
Q ss_pred CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccc---cccCCccEEEEecCC
Q 010867 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (498)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 182 (498)
...++.+...+++.++.+++........+.+... .....++.++.-+..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 5678899999999999999998887776654321 123566766665544
No 45
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=81.45 E-value=17 Score=36.47 Aligned_cols=123 Identities=11% Similarity=-0.033 Sum_probs=84.6
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHHcCCeEe
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICV 129 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~ 129 (498)
.++.+|++... .|.+|.+ ..+|...+...+..++.. .++.++|++...+|.+..+-. .+++.+..|+.++
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35666766552 4555554 478999888777666554 488999999988876544432 3678888999888
Q ss_pred ecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCCc
Q 010867 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSLT 183 (498)
Q Consensus 130 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~~ 183 (498)
..+. ..+..+...+++.++.++.........+.+.. ......++.+++-+..-
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l 319 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASF 319 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCC
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCC
Confidence 7654 57788888999999999999887766654432 22345677777766553
No 46
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=79.84 E-value=10 Score=38.35 Aligned_cols=123 Identities=10% Similarity=0.003 Sum_probs=87.9
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch-hHHHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~-~~~~~~lA~~~~G~~~~~l 131 (498)
.|+.+|++... .|.+|.+ ..+|...+...... ....++.++|++...++-+. -+...+++.+..|+.++.+
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46677776653 3555544 47888877543221 22347889999988888753 3455677888899988776
Q ss_pred CC-CCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCc
Q 010867 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (498)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 183 (498)
.. ...+..+...+++.++.++.........+.+........++.++.-+..-
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l 338 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPA 338 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccC
Confidence 54 45778899999999999999998888777766556667888888777653
No 47
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=78.55 E-value=21 Score=35.45 Aligned_cols=120 Identities=8% Similarity=-0.075 Sum_probs=80.3
Q ss_pred CCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHHcCCeEeec
Q 010867 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVPL 131 (498)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~~~l 131 (498)
|+.+|++... .|.+|.+ ..+|.+.+...+..++.. .++.++|++...+|-...+-. .+++++ .|+.++.+
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 4556665542 4555554 478998888777665554 488999999988887644332 244555 88888776
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCC
Q 010867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (498)
+ ...++.+...+.+.++.++.........+.+.. ....+.++.++.-+..
T Consensus 243 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 243 P-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 4 578889999999999999999888776654432 1233566777666654
No 48
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=78.28 E-value=13 Score=38.19 Aligned_cols=123 Identities=13% Similarity=0.014 Sum_probs=87.8
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 131 (498)
.|+.+|++... .|.+|.++ .+|.+.+...+.. ....++.+++++....+-+.+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46677766653 46666554 6788777543322 2345889999999988876543 44578888899987776
Q ss_pred C-CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCc
Q 010867 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (498)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 183 (498)
+ ....++.+...+++.++.+++........+.+........++.+++-++.-
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 3 356788999999999999999988877776655555567788888877654
No 49
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=77.34 E-value=36 Score=34.72 Aligned_cols=122 Identities=10% Similarity=-0.038 Sum_probs=84.2
Q ss_pred CCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH---HHHHHHHcCCeEee
Q 010867 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE---AMEACNALSLICVP 130 (498)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~---~~lA~~~~G~~~~~ 130 (498)
++.+|++... .|.+|.+ ..+|.+.+...+......+ ++.+++++....+-+..+-. .+++++..|+.++.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 4666666542 4555544 4789988887766655543 78899999988885543322 47788888998887
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccc-----cccCCccEEEEecCCc
Q 010867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSLT 183 (498)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~vi~~~~~~ 183 (498)
.+. .....+...+++.++.++.........+.+... .....++.+++-+..-
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l 314 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARL 314 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcC
Confidence 654 567788889999999999998877666544321 1345677777766653
No 50
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=75.06 E-value=20 Score=35.93 Aligned_cols=123 Identities=8% Similarity=-0.077 Sum_probs=81.3
Q ss_pred CCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHHcCCeEeecCC
Q 010867 57 GNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPLYD 133 (498)
Q Consensus 57 d~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l~~ 133 (498)
+.+|++... .|.+|.+ ..+|++.+..........+...++.+++++...+|-+.. .+...++.+..|+.++.+.
T Consensus 190 ~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 266 (550)
T 3rix_A 190 KTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY- 266 (550)
T ss_dssp TSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-
Confidence 455655542 4555554 467888887766554443333578899998888876543 2445677788999888774
Q ss_pred CCChhHHHHHHhhcCccEEEEcCchhHHhhcccc---cccCCccEEEEecCC
Q 010867 134 TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (498)
Q Consensus 134 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 182 (498)
...++.+...+++.++.+++........+.+... .....++.+++-+..
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 5678889999999999999998887776654322 223567777766654
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=74.80 E-value=19 Score=35.76 Aligned_cols=123 Identities=8% Similarity=-0.113 Sum_probs=84.5
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 131 (498)
.++.+|++... .|.+|.++ .+|...+...+..++. ..++.++|++....+-+... +..+++++..|+.++.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 34566666542 46666554 6888888776665544 35788999999888876443 44578888999988876
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCC
Q 010867 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (498)
+.. ..++.+...+++.++.+++........+.... ......++.++.-+..
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 543 46778888999999999999888776654432 2233456666666544
No 52
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=74.42 E-value=17 Score=35.94 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=82.5
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEeCCchhHH--HHHHHHHHcCCeE
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGA--EPGCRVGIYGANCPQWV--EAMEACNALSLIC 128 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv--~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~ 128 (498)
.|+.+|++... .|.+|.+ ..+|++.+...+..+.. ..++ .+++++...+|-...+- ..+++.+..|+.+
T Consensus 151 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFYT--SGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEEC--CC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 46677776652 4555554 46788888776655443 3467 78888888777654432 3467888899998
Q ss_pred eecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc-----ccccCCccEEEEecCC
Q 010867 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-----CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 129 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~vi~~~~~ 182 (498)
+.++. ..+..+...+++.++.+++........+.+.. ......++.++.-+..
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~ 283 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT 283 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTT
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCc
Confidence 87754 67888889999999999999888777665432 1123567777666554
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=74.10 E-value=24 Score=35.66 Aligned_cols=123 Identities=3% Similarity=-0.186 Sum_probs=84.5
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH--HHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE--AMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~--~~lA~~~~G~~~~~ 130 (498)
.|+.+|++... .|.+|.+ ..+|++.+...+..+.. ..++.++|++...+|-+..+-. .+++.+..|+.++.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 45667776653 4555554 47899998887766654 3588999999998887755433 37888889999887
Q ss_pred cCCCC---ChhHHHHHHhhcCccEEEEcCchhHHhhccc------ccccCCccEEEEecCC
Q 010867 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPD------CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 131 l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~~~~vi~~~~~ 182 (498)
+.+.. .+..+...+++.++.++.........+.+.. ......++.++.-+..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76542 5677888899999999988776555543321 1123566667666554
No 54
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.08 E-value=20 Score=35.57 Aligned_cols=123 Identities=10% Similarity=-0.051 Sum_probs=82.4
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~~~l 131 (498)
.++.+|++... .|.+|.+ ..+|+..+...+..... ..++.++|++...+|-+.. .+..+++.+..|+.++.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 34566665542 4555554 46788888776655444 3588999999988886543 344578888899998877
Q ss_pred CCC--CChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCC
Q 010867 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (498)
+.. ..++.+...+++.++.+++........+.... ....+.++.++.-+..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 653 46778888999999999999888776654432 2223566777666554
No 55
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=72.71 E-value=19 Score=33.83 Aligned_cols=131 Identities=18% Similarity=0.100 Sum_probs=83.3
Q ss_pred cccHHHHHHHHHHcCCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHH
Q 010867 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEA 117 (498)
Q Consensus 41 ~~tl~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~-~~~~ 117 (498)
.....+++.++. .|.+|++... .|.+|.+ ..+|++.+...+..++.. .+++++|++...+|-+.. .+..
T Consensus 24 ~~~~~~~~~~w~---~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~ 95 (358)
T 4gs5_A 24 FAQAYDFMEKWL---GGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMM 95 (358)
T ss_dssp HHHHHHHHHHHH---HTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHH
T ss_pred ccchhhHhhccC---CCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHH
Confidence 344445555554 3556665542 4666665 478999988776665543 488999999888876533 3444
Q ss_pred HHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc--ccccCCccEEEEecCC
Q 010867 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD--CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 118 ~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~vi~~~~~ 182 (498)
++..+..|+..+.+.+... ....+++.++.++......+..+.+.. ......++.++.-+..
T Consensus 96 ~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 96 LVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp HHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred HHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 5666777887776665432 234577889999988887766654432 2234566666665544
No 56
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=72.10 E-value=40 Score=33.98 Aligned_cols=124 Identities=11% Similarity=-0.074 Sum_probs=82.1
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~~~ 130 (498)
.++.+|++... .|.+|.++ .+|+. +...... ......++.++|++....+-+..+- ..+++.+..|+.++.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 35566666542 45555544 67877 4331111 1123458899999988887765443 246778888988777
Q ss_pred cCC-CCChhHHHHHHhhcCccEEEEcCchhHHhhcccc--cccCCccEEEEecCCc
Q 010867 131 LYD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSLT 183 (498)
Q Consensus 131 l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~~ 183 (498)
... ...++.+...+++.++.+++........+.+... .....++.++.-+..-
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESL 334 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcC
Confidence 653 6788999999999999999999887777655321 1235677777766553
No 57
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=70.99 E-value=51 Score=32.94 Aligned_cols=106 Identities=9% Similarity=-0.043 Sum_probs=76.6
Q ss_pred CCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeC
Q 010867 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (498)
Q Consensus 219 ~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~ 298 (498)
++.+|++....+..+ -..-.+|+..+...+..+...+.. .++.++|++...++-.. -.+..+++++..|+..+.+.
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPIN 108 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECC
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEccC
Confidence 567777655322111 112468898888888877766533 26889999999988653 23344778899999998876
Q ss_pred C--ChHhHHHHHhhhCCcEEEecchHHHHHHH
Q 010867 299 G--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (498)
Q Consensus 299 ~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (498)
. ..+.+...+++.++++++..+.....+..
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 5 78899999999999999999887766543
No 58
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=70.84 E-value=25 Score=35.16 Aligned_cols=125 Identities=12% Similarity=-0.121 Sum_probs=83.0
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 131 (498)
.++.++++... .|.+|.++ .+|++.+...+.... .....++.++|++...+|-...+ +...++++..|+..+..
T Consensus 174 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 174 PERAACGMAYT--TGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp CTTSEEEEEEE--CSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCCcEEEEEC--CCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 34566655442 46666654 678887764433211 11234788999988888765333 22457778889998887
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccc---cccCCccEEEEecCC
Q 010867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTSL 182 (498)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~vi~~~~~ 182 (498)
++...++.+...+++.++.+++........+.+... .....++.+++-+..
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 304 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSA 304 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSC
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCC
Confidence 777789999999999999999998877766554322 233567777666554
No 59
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=70.15 E-value=23 Score=30.65 Aligned_cols=53 Identities=6% Similarity=-0.174 Sum_probs=38.2
Q ss_pred CcEEEEecCh-HHHHHHHHHHHH-HHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEe
Q 010867 266 DDVYLSFLPL-AHILDRVIEEYF-FRRGASVGYYHG--DLNALRDDLMELKPTLLAG 318 (498)
Q Consensus 266 ~d~~l~~~pl-~h~~g~~~~~~~-l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~ 318 (498)
+.+++...+- .|..|...+-.. -..|..++.... .++.+.+.++++++.++..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3444544444 488888775544 555777777654 8999999999999998777
No 60
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=69.12 E-value=56 Score=32.22 Aligned_cols=121 Identities=7% Similarity=-0.089 Sum_probs=77.6
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 131 (498)
.++.+|++... .|.+|.++ .+|.+.+...+..+.. ..++.++|++...+|-...+ +...+.+...|+..+.+
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 45666665542 46666554 6888888877666554 34889999999888865443 23334434444444444
Q ss_pred CCCCChhHHHHHHhhcCccEEEEcCchhHHhhccc-ccccCCccEEEEecC
Q 010867 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-CRSAQRLRVMVCFTS 181 (498)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~vi~~~~ 181 (498)
. ...++.+...+++.++.+++........+.+.. ......++.++..+.
T Consensus 233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT 282 (509)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECC
T ss_pred c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCC
Confidence 4 678899999999999999998887776665432 233355666665554
No 61
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=68.78 E-value=37 Score=33.89 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=75.5
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (498)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~ 297 (498)
.++.++++... +| -.+|+..+...+..+...+.. .++.++|++...+|-.. -.+..+++++..|+..+.+
T Consensus 35 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGA---NG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECC---CC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 35677765422 22 358999888888877766533 37889999999988753 2334477889999998877
Q ss_pred CC--ChHhHHHHHhhhCCcEEEecchHHHHHHH
Q 010867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (498)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (498)
.. .++.+...++..++.+++..+.....+.+
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 78899999999999999999887776654
No 62
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=67.07 E-value=32 Score=35.36 Aligned_cols=124 Identities=9% Similarity=0.012 Sum_probs=83.7
Q ss_pred CCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHHcCCeEeec
Q 010867 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (498)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~~~l 131 (498)
++.++++... .|.+|.++ .+|.+.+......... ...+++++|++....+-+...- ..+++.+..|+.++..
T Consensus 255 ~~d~a~ilyT--SGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILYT--SGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEEE--CCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEec--cCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 4566666542 46666654 5677776544322111 1358899999888777664433 3467889999998877
Q ss_pred CCC---CChhHHHHHHhhcCccEEEEcCchhHHhhcccc-----cccCCccEEEEecCCc
Q 010867 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSLT 183 (498)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-----~~~~~~~~vi~~~~~~ 183 (498)
+.. ..++.+..++++.++.++++.......+.+... .....++.+++-+..-
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l 390 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPI 390 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCC
Confidence 642 467889999999999999999887777655432 1245677777776653
No 63
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=64.93 E-value=28 Score=35.24 Aligned_cols=124 Identities=8% Similarity=-0.109 Sum_probs=80.6
Q ss_pred CCCCCceeeccccCCCCCCcee--eeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPYVW--KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~~--~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~--~~~lA~~~~G~~~~~ 130 (498)
.++.+|++... .|.+|.++- +|...+.... .......++.+++++....+.+.... ..+++.+..|+.++.
T Consensus 223 ~~~d~a~i~~T--SGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYFS--SGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEEe--CCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 45566665542 566776664 4444333222 12222347889998888777664432 346888999999887
Q ss_pred cC-CCCChhHHHHHHhhcCccEEEEcCchhHHhhcccc--cccCCccEEEEecCCc
Q 010867 131 LY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSLT 183 (498)
Q Consensus 131 l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~--~~~~~~~~vi~~~~~~ 183 (498)
.+ ....++.+...+++.++.+++........+.+... .....++.++.-+..-
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l 353 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPL 353 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCC
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCC
Confidence 75 56788899999999999999998887776654321 1235667777666553
No 64
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=63.01 E-value=80 Score=30.63 Aligned_cols=107 Identities=12% Similarity=-0.000 Sum_probs=76.5
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (498)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~ 297 (498)
.++.+|++.........-....+|+..+...+..+...+... +. ++|++...++-.. -.+..+++++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 467778776543211112346799999999988888776433 33 7899988887653 2234477889999998876
Q ss_pred CC-----ChHhHHHHHhhhCCcEEEecchHHHHHHH
Q 010867 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (498)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (498)
.. ..+.+...+++.++.+++..+.....+.+
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788899999999999999887776544
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=61.43 E-value=64 Score=33.20 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=73.4
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (498)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~ 297 (498)
.++.+|++.... ..| ....+|+..+...+..+...+.. ..+..++|++...+|..- -.+..+++++..|+..+.+
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~-~~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTY-SMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHH-TSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEee
Confidence 466778775432 222 23568999988888887776630 127889999999999764 2334477889999998877
Q ss_pred CC--ChHhHHHHHhhhCCcEEEecchH
Q 010867 298 HG--DLNALRDDLMELKPTLLAGVPRV 322 (498)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~ 322 (498)
.. .++.+...+++.++.+++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 64 88999999999999999987654
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.50 E-value=74 Score=31.90 Aligned_cols=96 Identities=8% Similarity=-0.010 Sum_probs=70.7
Q ss_pred CCCCeEEEEeccCCCCCCceEEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEe
Q 010867 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (498)
Q Consensus 218 ~~~~~a~i~~TSGtTG~pK~v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~ 297 (498)
.++.++++. . .-.+|+..+...+..+...+.. .++.++|++...++-.. -.+..+++++..|+..+.+
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 356677653 1 2368999888887777665532 26889999998888663 2234477789999998887
Q ss_pred CC--ChHhHHHHHhhhCCcEEEecchHHHH
Q 010867 298 HG--DLNALRDDLMELKPTLLAGVPRVFEK 325 (498)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~ 325 (498)
.. .++.+...+++.++.+++..+.....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 65 78889999999999999988766543
No 67
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=58.17 E-value=66 Score=31.72 Aligned_cols=103 Identities=10% Similarity=-0.089 Sum_probs=72.9
Q ss_pred CCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHHcCCeEee
Q 010867 55 YPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVP 130 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~ 130 (498)
.++.+|++... .|.+|.+ ..+|...+...+..+...+ ++.++|++...++....+ +..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45666766553 4656655 4789999888877766554 788999988877754332 3357888899999887
Q ss_pred cCCCCChhHHHHHHhhcCccEEEEcCchhHHhhc
Q 010867 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (498)
Q Consensus 131 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 164 (498)
+. ....+.+...+ +.++.+++........+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 45667777777 6789999988877666544
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=57.00 E-value=47 Score=30.82 Aligned_cols=66 Identities=8% Similarity=-0.020 Sum_probs=47.9
Q ss_pred HHHHcC-CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 92 ALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 92 ~L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
.+.+.| +++|+.|.+....+-.-..+.+++.+.|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344556 488888655555566677778888888987766656555566677888999999999764
No 69
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=53.93 E-value=60 Score=32.19 Aligned_cols=87 Identities=7% Similarity=-0.141 Sum_probs=67.4
Q ss_pred EEeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcE
Q 010867 238 VVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTL 315 (498)
Q Consensus 238 v~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~ 315 (498)
..+|+..+...+..+...+.. .++.++|++...++-..- .+..+++++..|+..+.+.. .+..+...+++.++..
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 358999888888777766532 267889999999886632 23446788999999887765 7889999999999999
Q ss_pred EEecchHHHHHH
Q 010867 316 LAGVPRVFEKIH 327 (498)
Q Consensus 316 l~~~P~~~~~l~ 327 (498)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999888766543
No 70
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=53.27 E-value=80 Score=34.26 Aligned_cols=126 Identities=10% Similarity=-0.062 Sum_probs=84.9
Q ss_pred cCCCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchh--HHHHHHHHHHcCCeE
Q 010867 54 KYPGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLIC 128 (498)
Q Consensus 54 ~~pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~-~~gv~~g~~V~i~~~n~~~--~~~~~lA~~~~G~~~ 128 (498)
..|+.+|++... .|.+|.+ ..+|.+.+...+........ ..++.++|++...+|-... +...++..+..|+.+
T Consensus 222 ~~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~ 299 (979)
T 3tsy_A 222 ISPDDVVALPYS--SGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI 299 (979)
T ss_dssp CCTTSEEECCBC--CCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEE
T ss_pred CCccceEEEEeC--CCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEE
Confidence 356777776653 4555554 47899888776554433222 2468899999888876533 234567788899988
Q ss_pred eecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhccccc---ccCCccEEEEecCC
Q 010867 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR---SAQRLRVMVCFTSL 182 (498)
Q Consensus 129 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~vi~~~~~ 182 (498)
+..+ ....+.+...+++.++.++.........+.+.... ....++.++.-+..
T Consensus 300 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 300 LIMP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp EECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred EEeC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence 8764 56778899999999999999988777666543321 23566766665544
No 71
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=50.96 E-value=80 Score=31.52 Aligned_cols=123 Identities=14% Similarity=-0.059 Sum_probs=80.1
Q ss_pred CCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHHcCCeEeec
Q 010867 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPL 131 (498)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~--~~~~lA~~~~G~~~~~l 131 (498)
|+.+|++... .|.+|.+ ..+|++.+...+..+... ..++.++|++...+|-...+ ...+++.+..|+.++.+
T Consensus 175 ~~d~a~i~~T--SGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 175 PNDIAYLQYT--SGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp TTSEEEEECT--TSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCeEEEEeC--CCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 5667776653 3555544 478999887665544321 25889999999888876543 34567778888887766
Q ss_pred CC---CCChhHHHHHHhhcCccEEEEcCchhHHhhcccc------cccCCccEEEEecCC
Q 010867 132 YD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC------RSAQRLRVMVCFTSL 182 (498)
Q Consensus 132 ~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~------~~~~~~~~vi~~~~~ 182 (498)
.+ ...+..+...+++.++.+++........+.+... .....++.++.-+..
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 310 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEP 310 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSC
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCcc
Confidence 54 2356788889999999999988765544332211 123455666655544
No 72
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=50.81 E-value=1.3e+02 Score=29.60 Aligned_cols=124 Identities=8% Similarity=-0.116 Sum_probs=78.5
Q ss_pred CCCCceeeccccCCCCCCc--eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHHcCCeEeecC
Q 010867 56 PGNRMLGWRPFVDGKFGPY--VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (498)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l~ 132 (498)
++.+|++... .|.+|.+ ..+|++.+...+..+.... ..++.+++++....+-+... +..+++++..|+.++.++
T Consensus 144 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIFT--SGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEEC--CC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEEc--CCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 4556666552 4555544 4789988876655443321 24677888887777665433 455677888999888775
Q ss_pred CC--CChhHHHHHHhhcCccEEEEcCchhHHhhccc---ccccCCccEEEEecCC
Q 010867 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (498)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~~vi~~~~~ 182 (498)
.. .....+...+...++.++.........+.... ....+.++.++.-+..
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~ 275 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEE 275 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEeccc
Confidence 44 36678888999999999998887765543322 2233556666665544
No 73
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=50.52 E-value=36 Score=38.39 Aligned_cols=123 Identities=9% Similarity=-0.049 Sum_probs=85.6
Q ss_pred CCCCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHHcCCeEeec
Q 010867 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (498)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~~~l 131 (498)
.|+.+|++... .|.+|.++ .+|.+.+... .......++.++|++..+.+-+.+. +.-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 46677766653 46666554 6788877643 1112234788999998888776554 44577888899988877
Q ss_pred CC--CCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCc
Q 010867 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLT 183 (498)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 183 (498)
++ ...++.+...+++.++.++.........+.+........++.+++-++..
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 65 35778999999999999999988777766543333345677777776653
No 74
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=50.42 E-value=58 Score=32.09 Aligned_cols=85 Identities=14% Similarity=0.050 Sum_probs=66.3
Q ss_pred EeccHhHHHHhhhhhhhhccccCCCCCCcEEEEecChHHHHHHHHHHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEE
Q 010867 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLL 316 (498)
Q Consensus 239 ~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l 316 (498)
.+|+..+...+..+...+... ++.++|++...++-.. -.+..+++++..|+..+.+.. ..+.+...+++.++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 589998888888777665332 6889999999988763 233447788999999888765 78899999999999999
Q ss_pred EecchHHHHH
Q 010867 317 AGVPRVFEKI 326 (498)
Q Consensus 317 ~~~P~~~~~l 326 (498)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9988765543
No 75
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=49.44 E-value=90 Score=31.14 Aligned_cols=125 Identities=6% Similarity=-0.166 Sum_probs=81.1
Q ss_pred CCCceeeccccCCCCCCce--eeeHHHHHHHHHHHHHHHH-----HcCCCCCCEEEEEeCCchh-HHHHHHHHHHcCCeE
Q 010867 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALR-----ASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLIC 128 (498)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~lA~~L~-----~~gv~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~~ 128 (498)
+.+|++... .|.+|.++ .+|+..+...+..++..+. ...+...+++....+.... .+..++..+..|+..
T Consensus 175 ~~~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLYT--SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEEC--CCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 334544432 46666554 6799999888888777654 2356777887777666544 344467778889887
Q ss_pred eecCCCCChhHHHHHHhhcCccEEEEcCchhHHhhcccccccCCccEEEEecCCcH
Q 010867 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTA 184 (498)
Q Consensus 129 ~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 184 (498)
+........+.+...+++.++.++......+..+.. .......++.+++-+..-.
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~~l~ 307 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGEKMT 307 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESSCCC
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecCCCC
Confidence 766544445677788999999999998877665433 2334567777777665543
No 76
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=46.26 E-value=94 Score=28.92 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=50.1
Q ss_pred HHcC-CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 94 RASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 94 ~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
.+.| +++|.+..+....+-.-..+.++|.+.|..+..+-|...+..-...++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 577877667777777788888999999997776667677777788899999999998753
No 77
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=44.25 E-value=5.5 Score=40.52 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=26.3
Q ss_pred CCCCeEEEEeccCCC-CCCceEEeccHhHHHH
Q 010867 218 QPFNICTIMYTSGTS-GDPKGVVLTHETIATF 248 (498)
Q Consensus 218 ~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~~ 248 (498)
.++.+.++..||||| |.||.+.+|...+-..
T Consensus 97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 97 SAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp CSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 566778999999999 8899999999876653
No 78
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=40.79 E-value=98 Score=27.67 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 010867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (498)
Q Consensus 46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~ 115 (498)
.++++..+.-|+...+.+- |...-++-..|..++.+++.+.+..|.+.|+. ..++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 4556666678998888776 66666667889999999999999999997763 556666665543
No 79
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=37.27 E-value=7.8 Score=39.21 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCCCeEEEEeccCCC-CCCceEEeccHhHHH
Q 010867 217 PQPFNICTIMYTSGTS-GDPKGVVLTHETIAT 247 (498)
Q Consensus 217 ~~~~~~a~i~~TSGtT-G~pK~v~~sh~~l~~ 247 (498)
..++.+.++..||||| |.+|.+.++...+-.
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 3556677899999999 789999999987655
No 80
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=35.19 E-value=1.7e+02 Score=26.68 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=44.1
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 93 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
+.+.| +++|....+....+-.-..+.+++.+.|..+..+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 456643444455566666777778899987766555555566667888999999998853
No 81
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=34.65 E-value=1.6e+02 Score=28.36 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=46.6
Q ss_pred HHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcC
Q 010867 94 RASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 94 ~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (498)
.+.|. ++|....+....+-.-..+.+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 6775555555566677778888999999777666666666777788999999999974
No 82
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=34.58 E-value=99 Score=21.45 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=35.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCe
Q 010867 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (498)
Q Consensus 75 ~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 127 (498)
..+.+.+|.+. +.+.+..+++.|.++|.++..+..+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 57788777543 44557788899999999998888888888888864
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=32.74 E-value=84 Score=29.04 Aligned_cols=60 Identities=7% Similarity=0.020 Sum_probs=39.1
Q ss_pred CCCCCCEEEEEeCCch------hHHHHHHH-HHHcCCeEeecCCCC------------ChhHHHHHHhhcCccEEEEcC
Q 010867 97 GAEPGCRVGIYGANCP------QWVEAMEA-CNALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 97 gv~~g~~V~i~~~n~~------~~~~~~lA-~~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 156 (498)
-+++||+|+|++|.+. +-+..... +-..|..++.-..-. .+++|...+.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999863 22222222 334677766432211 234788888889999999964
No 84
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=32.35 E-value=1.2e+02 Score=27.81 Aligned_cols=77 Identities=17% Similarity=0.063 Sum_probs=51.8
Q ss_pred eeeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEE
Q 010867 76 WKTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (498)
Q Consensus 76 ~~Ty~el~~~~~~lA---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 152 (498)
.+++.+......... +.+...++++|++|.|....+.-..+++++....|+.++.++.. ++. ..+.+..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 467777554433322 23455689999999999887777777777777778877766543 333 345667788777
Q ss_pred EEc
Q 010867 153 FVQ 155 (498)
Q Consensus 153 i~~ 155 (498)
|-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 85
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=32.08 E-value=1.4e+02 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHHH-HHcCCeEeecCCCC------------ChhHHHHHHhhcCccEEEEcC
Q 010867 97 GAEPGCRVGIYGANCPQ------WVEAMEAC-NALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 97 gv~~g~~V~i~~~n~~~------~~~~~lA~-~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 156 (498)
-+++||+|+|++|.+.- -+...... -..|..++.-.... .+++|...+.+-+++.|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999842 23222332 34687766432111 224688888888999999865
No 86
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=31.64 E-value=2.1e+02 Score=25.85 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 93 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..+..+-|...+..-..+++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344554 66666655 44445555666777789987766555555555667788899999999863
No 87
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=30.75 E-value=1.3e+02 Score=27.34 Aligned_cols=75 Identities=11% Similarity=-0.062 Sum_probs=47.9
Q ss_pred eeeHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEe-CCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccE
Q 010867 76 WKTYKEVYEEVLQI--V-SALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (498)
Q Consensus 76 ~~Ty~el~~~~~~l--A-~~L~~~gv~~g~~V~i~~-~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 151 (498)
.+++.+........ | +.|...++++|++|+|.. ....-..++.+|- ..|+.++.+. +.++ ..++++.+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 46777765443332 2 334556899999999997 4455666666654 5788776553 3445 45667788887
Q ss_pred EEEc
Q 010867 152 VFVQ 155 (498)
Q Consensus 152 vi~~ 155 (498)
++..
T Consensus 200 ~i~~ 203 (321)
T 3tqh_A 200 CINY 203 (321)
T ss_dssp EEET
T ss_pred EEeC
Confidence 6654
No 88
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=29.63 E-value=2.3e+02 Score=25.55 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=42.4
Q ss_pred HHHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 93 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..+..+-|...+..-..+++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334454 56665554 44445556667777889987666555544555666788899999999864
No 89
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.52 E-value=1.2e+02 Score=28.49 Aligned_cols=60 Identities=10% Similarity=-0.075 Sum_probs=38.7
Q ss_pred HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCC-----CCChhHHHHHHhhcC--ccEEEE
Q 010867 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYD-----TLGPGAVNFILDHAE--IDFVFV 154 (498)
Q Consensus 92 ~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~-----~~~~~~l~~~l~~~~--~~~vi~ 154 (498)
.|...++++||.|.+-.+....+. -++...|+.++.++. ....+++...+...+ +++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 344557889999888777665443 455678887766543 236677877774334 666664
No 90
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=29.13 E-value=2.4e+02 Score=24.92 Aligned_cols=61 Identities=15% Similarity=0.186 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 010867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (498)
Q Consensus 46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~ 113 (498)
.++++..+..|+...+.+. |...-++-..++.++.+++.+.+..|.+.|+. ..++.-|+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d----~iviaCNTas 77 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNIK----MLVIACNTAT 77 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCS----EEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCchhh
Confidence 4556666778888777765 65444455678999999999999999887663 4555555554
No 91
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=28.96 E-value=1.6e+02 Score=27.21 Aligned_cols=60 Identities=5% Similarity=-0.006 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHHHH-HcCCeEeecCCCC------------ChhHHHHHHhhcCccEEEEcC
Q 010867 97 GAEPGCRVGIYGANCPQ------WVEAMEACN-ALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 97 gv~~g~~V~i~~~n~~~------~~~~~lA~~-~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 156 (498)
-+++||+|+|++|.+.- -+......+ ..|..++.-+... .+++|...+.+-+++.|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999999752 222223333 4677776443111 224788888888999999965
No 92
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=28.53 E-value=2.7e+02 Score=25.07 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=43.2
Q ss_pred HHHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcC
Q 010867 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 93 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (498)
+.+.|. ++|+.|.... .+-.-..+.+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 52 a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 52 AEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 334453 6676666655 34455566677779998777665555555666788899999999986
No 93
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=28.36 E-value=2.2e+02 Score=26.32 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=42.6
Q ss_pred HHHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 93 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
+.+.|. ++|+.|..... +-.-..+.+++.+.|..++.+-|...+..-..+++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334453 67766655543 44555666777789987666555555566677888899999999863
No 94
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=28.06 E-value=1.5e+02 Score=27.32 Aligned_cols=74 Identities=14% Similarity=0.027 Sum_probs=47.6
Q ss_pred eeeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEE
Q 010867 76 WKTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (498)
Q Consensus 76 ~~Ty~el~~~~~~l---A~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 152 (498)
.+++.+........ -+.|.+.++++|++|.|.....+-.+++.+|- ..|+.++.+.... +.+. +++..+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKKQ-DALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTHH-HHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHHH-HHHhcCCCee
Confidence 46777665322221 13455668999999999987556666666665 5788777665433 3333 4566888888
Q ss_pred E
Q 010867 153 F 153 (498)
Q Consensus 153 i 153 (498)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 95
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=27.34 E-value=1.1e+02 Score=28.79 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=39.8
Q ss_pred CCCCCCEEEEEeCCchh------HHHHHHHH-HHcCCeEeecCCCC------------ChhHHHHHHhhcCccEEEEcC
Q 010867 97 GAEPGCRVGIYGANCPQ------WVEAMEAC-NALSLICVPLYDTL------------GPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 97 gv~~g~~V~i~~~n~~~------~~~~~lA~-~~~G~~~~~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 156 (498)
-+++||+|+|++|.+.- -+...... -..|..++.-+... .+++|...+.+-+++.|++..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 57899999999999742 22222332 34687776442211 224688888888999999965
No 96
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=26.66 E-value=2e+02 Score=26.59 Aligned_cols=79 Identities=14% Similarity=-0.026 Sum_probs=48.6
Q ss_pred eeeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEeC-CchhHHHHHHHHHHcCCeEe-ecCCCCChhHHHHHHhhcCc
Q 010867 76 WKTYKEVYEEV--LQIV-SALRA-SGAEPGCRVGIYGA-NCPQWVEAMEACNALSLICV-PLYDTLGPGAVNFILDHAEI 149 (498)
Q Consensus 76 ~~Ty~el~~~~--~~lA-~~L~~-~gv~~g~~V~i~~~-n~~~~~~~~lA~~~~G~~~~-~l~~~~~~~~l~~~l~~~~~ 149 (498)
.+++.+..... --.| +.|.+ .++++|++|.|... ...-.+++.+|- ..|+.++ ........++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654421 1122 23444 48999999999998 556666666665 4688544 34443333445566778888
Q ss_pred cEEEEc
Q 010867 150 DFVFVQ 155 (498)
Q Consensus 150 ~~vi~~ 155 (498)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887754
No 97
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=26.39 E-value=1.6e+02 Score=27.30 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=48.0
Q ss_pred eeeHHHHHHHHHHH---HHHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccE
Q 010867 76 WKTYKEVYEEVLQI---VSALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (498)
Q Consensus 76 ~~Ty~el~~~~~~l---A~~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~ 151 (498)
.+++.+........ -+.|.+.+++ +|++|.|.....+-..++.+|-. .|+.++.+... ++.+....+..+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 46776643221111 1335556888 99999999876667777777664 68876655543 344444454777776
Q ss_pred EEEcC
Q 010867 152 VFVQD 156 (498)
Q Consensus 152 vi~~~ 156 (498)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 66543
No 98
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=26.25 E-value=2.2e+02 Score=25.06 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCcEEEEecChH-HHHHHHH-HHHHHHcCcEEEEeCC--ChHhHHHHHhhhCCcEEEecc------hHHHHHHHHHHHH
Q 010867 264 TVDDVYLSFLPLA-HILDRVI-EEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVP------RVFEKIHEGIKKA 333 (498)
Q Consensus 264 ~~~d~~l~~~pl~-h~~g~~~-~~~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P------~~~~~l~~~~~~~ 333 (498)
....+++...+-. |..|... ....-..|..++.... .++.+.+.++++++.++...- ..+..+++.++..
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~ 201 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLEN 201 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhc
Q ss_pred HHhhchHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHhCCceeEEEEcCCCCCHHHHH
Q 010867 334 LEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEE 401 (498)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~ 401 (498)
....+ +++||..++++..+
T Consensus 202 ~~~~~-------------------------------------------------v~vGG~~~~~~~~~ 220 (258)
T 2i2x_B 202 GIKIP-------------------------------------------------FACGGGAVNQDFVS 220 (258)
T ss_dssp TCCCC-------------------------------------------------EEEESTTCCHHHHH
T ss_pred CCCCc-------------------------------------------------EEEECccCCHHHHH
No 99
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=26.16 E-value=1.8e+02 Score=25.97 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH
Q 010867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV 115 (498)
Q Consensus 46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~~ 115 (498)
.+++...+.-|+...+..- |...-++-.-++.++.+++.+.+..|.+.|++ ..++.-|+...+
T Consensus 38 tv~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d----~IVIACNTa~~~ 100 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQID----MLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChhHH
Confidence 3456666678888887776 76555666789999999999999999877663 566666665543
No 100
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=25.74 E-value=2.8e+02 Score=24.54 Aligned_cols=61 Identities=16% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 010867 47 IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (498)
Q Consensus 47 ~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~~ 114 (498)
.++...+.-|+...+..- |...-++-.-+|.++.+++.+.+..|.+.|++ ..++.-|+...
T Consensus 22 v~~~i~~~lp~~~~iy~~---D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~----~iVIACNTa~~ 82 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFG---DIARIPYGTKSRATIQKFAAQTAKFLIDQEVK----AIIIACNTISA 82 (268)
T ss_dssp HHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHH
T ss_pred HHHHHHHHCCCCcEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChHH
Confidence 344555567877777665 66556666789999999999999999987763 55566666554
No 101
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=25.65 E-value=1.9e+02 Score=26.13 Aligned_cols=73 Identities=5% Similarity=-0.026 Sum_probs=48.0
Q ss_pred eeeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEE
Q 010867 76 WKTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (498)
Q Consensus 76 ~~Ty~el~~~~~~lA---~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 152 (498)
.+++.+.......++ +.|...++++|++|.|......-.+++.+|- ..|+.++.+. +++.+. ++++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~~-~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQA-LAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCHH-HHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhHH-HHHHcCCCEE
Confidence 478887754333333 2343448999999999999556666666665 5688777666 233333 3466788888
Q ss_pred E
Q 010867 153 F 153 (498)
Q Consensus 153 i 153 (498)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 102
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=24.93 E-value=2.9e+02 Score=25.18 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcC
Q 010867 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 93 L~~~g-v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (498)
+.+.| +++++.|+.. ..+-.-..+.+++.+.|..++.+-|...+..-...++..++++++++.
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 34455 4667776554 345556677777788898777665665566667788899999999986
No 103
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=24.81 E-value=2.7e+02 Score=24.67 Aligned_cols=62 Identities=15% Similarity=0.146 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCchhH
Q 010867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA-SGAEPGCRVGIYGANCPQW 114 (498)
Q Consensus 46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~g~~V~i~~~n~~~~ 114 (498)
.++++..+..|+...+.+. |...-++-..+..++.+++.+.+..|.+ .|+. ..++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d----~iViACNTas~ 79 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHIK----MLVIACNTATA 79 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCS----EEEECCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC----EEEEeCchhhH
Confidence 4566666778988777665 5443444567899999999999999998 7763 45555555543
No 104
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.73 E-value=2.5e+02 Score=26.92 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=33.0
Q ss_pred EEEeCCchhHHHH-HHHHHHcCCeEeecCCCCChh--HHHHHHhhcCccEEEEcCchhHHhhccc
Q 010867 105 GIYGANCPQWVEA-MEACNALSLICVPLYDTLGPG--AVNFILDHAEIDFVFVQDKKVKELLSPD 166 (498)
Q Consensus 105 ~i~~~n~~~~~~~-~lA~~~~G~~~~~l~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 166 (498)
+++..++.+.+.+ +.++...|-.++..++.+... .+...+...++++++++....+.+.+..
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 4555566554433 334445565555555555322 2222566778888877765555444433
No 105
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=24.51 E-value=3e+02 Score=24.95 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEeCCc-hhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEc
Q 010867 97 GAEPGCRVGIYGANC-PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQ 155 (498)
Q Consensus 97 gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~ 155 (498)
++++|++|.|....+ +-..++.+| ...|+.++.+.. +++++. .++..+++.++..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 789999999999544 555555555 457888776655 345554 5566788777653
No 106
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=23.76 E-value=58 Score=29.15 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCCc
Q 010867 87 LQIVSALRASGAEPGCRVGIYGANC 111 (498)
Q Consensus 87 ~~lA~~L~~~gv~~g~~V~i~~~n~ 111 (498)
..+...|+++|+++||.|.+...-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 3456678899999999999988754
No 107
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=23.76 E-value=2.3e+02 Score=26.07 Aligned_cols=52 Identities=6% Similarity=-0.019 Sum_probs=23.8
Q ss_pred CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCC-------CChhHHHHHHhhcCccEEE
Q 010867 99 EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-------LGPGAVNFILDHAEIDFVF 153 (498)
Q Consensus 99 ~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~-------~~~~~l~~~l~~~~~~~vi 153 (498)
++||.|.+..+.... ...++...|+.++.++.. ...+++...++..++++|+
T Consensus 107 ~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~ 165 (391)
T 3dzz_A 107 SPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMV 165 (391)
T ss_dssp CTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEE
T ss_pred CCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEE
Confidence 455555544443332 222334455555444331 3455555555544455443
No 108
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=23.74 E-value=2.2e+02 Score=25.97 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=49.6
Q ss_pred eeeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEE
Q 010867 76 WKTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (498)
Q Consensus 76 ~~Ty~el~~~~~~l---A~~L~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~v 152 (498)
.+++.+........ -+.|...++++|++|.|......-.+++.+|- ..|+.++.+.. +++.+. +++..+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEE
Confidence 46777755332221 23455558999999999887666777776666 46887776654 344443 5677888877
Q ss_pred EEcC
Q 010867 153 FVQD 156 (498)
Q Consensus 153 i~~~ 156 (498)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 109
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=23.54 E-value=2.6e+02 Score=25.79 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=42.9
Q ss_pred HHHH--cCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcC
Q 010867 92 ALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 92 ~L~~--~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (498)
.|.+ .++++|++|.|......-..++.+|-.+.|+.++.+.. +++.+. +++..+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEecc
Confidence 3555 68999999999998667777777776543887666654 344443 45678888777543
No 110
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=23.39 E-value=1.3e+02 Score=26.39 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 010867 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (498)
Q Consensus 46 ~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~ 113 (498)
.++++..+..|+...+.+. |...-++..-++.++.+++.+.+..|.+.|+. ..++.-|+..
T Consensus 14 tv~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d----~iviaCNTa~ 74 (255)
T 2jfz_A 14 SVLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEIE----LLIVACNTAS 74 (255)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCS----CEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCchhh
Confidence 3455666678988888776 66555555678999999999999999887763 3444444544
No 111
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=22.40 E-value=2.8e+02 Score=25.71 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=42.1
Q ss_pred HHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcC
Q 010867 92 ALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 92 ~L~~~gv~-~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~ 156 (498)
.|.+.+++ +|++|.|.....+-..++.+|- ..|+.++.+.. +++.+....+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 35566888 9999999987666667666665 57887665554 345555555577887766433
No 112
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=22.36 E-value=3.5e+02 Score=24.15 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 010867 45 WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (498)
Q Consensus 45 ~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~ 113 (498)
..++++..+..|+...+.+. |...-++-..++.++.+++.+.+..|.+.|+ ...++.-|+..
T Consensus 35 ltv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~IVIaCNTas 96 (286)
T 2jfq_A 35 LTVAKEIMRQLPNETIYYLG---DIGRCPYGPRPGEQVKQYTVEIARKLMEFDI----KMLVIACNTAT 96 (286)
T ss_dssp HHHHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHH
T ss_pred HHHHHHHHHHCCCccEEEec---cCCCCCcCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCchh
Confidence 35667777778888777655 5443344467899999999999999987665 34555555554
No 113
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=22.20 E-value=65 Score=29.10 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=23.4
Q ss_pred eeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 010867 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (498)
Q Consensus 75 ~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~ 111 (498)
+.+|-.+|. ..|+++|+++||.|.+...-+
T Consensus 20 ~~~T~~~L~-------~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 20 ELVTRDRLA-------SDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CEECHHHHH-------HHHHHHTCCTTCEEEEEECST
T ss_pred CCcCHHHHH-------HHHHHcCCCCCCEEEEEechH
Confidence 467776654 568889999999999987654
No 114
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=22.15 E-value=2.7e+02 Score=25.90 Aligned_cols=60 Identities=10% Similarity=-0.005 Sum_probs=37.5
Q ss_pred HHcCCCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCC----CChhHHHHHHhhc--CccEEEEcC
Q 010867 94 RASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT----LGPGAVNFILDHA--EIDFVFVQD 156 (498)
Q Consensus 94 ~~~gv~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 156 (498)
...++++||.|.+..+....+.. ++...|+.++.++.. ...+++...++.. ++++|+...
T Consensus 65 ~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 65 RVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 33456789988888777665543 334578776655432 3567777777653 466666543
No 115
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=22.08 E-value=64 Score=28.95 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCCCCEEEEEeCCc
Q 010867 89 IVSALRASGAEPGCRVGIYGANC 111 (498)
Q Consensus 89 lA~~L~~~gv~~g~~V~i~~~n~ 111 (498)
+...|+++|+++||.|.|...-+
T Consensus 18 L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHcCCCCCCEEEEEechH
Confidence 55678889999999999987644
No 116
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=22.07 E-value=3.8e+02 Score=23.98 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCCCceeeccccCCCCCCceeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 010867 45 WDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (498)
Q Consensus 45 ~~~l~~~~~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~g~~V~i~~~n~~~ 113 (498)
..++++..+..|+...+.+. |...-++-..++.++.+++.+.+..|.+.|+. ..++.-|+..
T Consensus 37 ltv~~~i~~~~P~~~~iy~~---D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~d----~IVIACNTas 98 (290)
T 2vvt_A 37 LTVLKEALKQLPNERLIYLG---DTARCPYGPRPAEQVVQFTWEMADFLLKKRIK----MLVIACNTAT 98 (290)
T ss_dssp HHHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCS----EEEECCHHHH
T ss_pred HHHHHHHHHHCCCccEEEec---ccccCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCcchh
Confidence 45777777889988777655 54333334578999999999999999886653 5555555554
No 117
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=21.89 E-value=3.5e+02 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=30.5
Q ss_pred CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecC--CC----CChhHHHHHHhh----cCccEEEEc
Q 010867 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLY--DT----LGPGAVNFILDH----AEIDFVFVQ 155 (498)
Q Consensus 98 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~--~~----~~~~~l~~~l~~----~~~~~vi~~ 155 (498)
.++||.|.+..+........ +...|+.++.++ .. ...+++...++. .++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 35777777666655444333 566677666554 21 245667666653 245555543
No 118
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=21.55 E-value=1.8e+02 Score=26.94 Aligned_cols=58 Identities=7% Similarity=-0.012 Sum_probs=40.6
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCch
Q 010867 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKK 158 (498)
Q Consensus 100 ~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 158 (498)
+.+.|+-. ..+-.-..+.++|.+.|..+..+-|...+..-...++..++++++++...
T Consensus 75 ~~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 75 KPKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CCSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 33444333 34555666778888999876666566666667788899999999998754
No 119
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=21.36 E-value=2.8e+02 Score=25.20 Aligned_cols=58 Identities=19% Similarity=0.129 Sum_probs=39.6
Q ss_pred HHcCCCCCCEEEEEeCCc-hhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEE
Q 010867 94 RASGAEPGCRVGIYGANC-PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (498)
Q Consensus 94 ~~~gv~~g~~V~i~~~n~-~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~ 154 (498)
...++++|++|.|....+ +-..++.++ ...|+.++.+.. +++.+..+.+..+++.++.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEE
Confidence 345899999999999854 555555555 468887766653 4556655547778776664
No 120
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=21.33 E-value=2e+02 Score=26.54 Aligned_cols=79 Identities=11% Similarity=-0.066 Sum_probs=47.9
Q ss_pred eeeHHHHHHHH--HHHH-HHHHHc-CCCCC-CEEEEEeC-CchhHHHHHHHHHHcCCeEeecCCCCCh-hHHHHHHhhcC
Q 010867 76 WKTYKEVYEEV--LQIV-SALRAS-GAEPG-CRVGIYGA-NCPQWVEAMEACNALSLICVPLYDTLGP-GAVNFILDHAE 148 (498)
Q Consensus 76 ~~Ty~el~~~~--~~lA-~~L~~~-gv~~g-~~V~i~~~-n~~~~~~~~lA~~~~G~~~~~l~~~~~~-~~l~~~l~~~~ 148 (498)
.+++.+..... -..| +.|.+. ++++| ++|.|... ...-.+++.+|- ..|+.++.+...... ++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 37777654332 1122 234443 79999 99999987 556667667665 468876655433222 33344557788
Q ss_pred ccEEEEc
Q 010867 149 IDFVFVQ 155 (498)
Q Consensus 149 ~~~vi~~ 155 (498)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8877753
No 121
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=21.18 E-value=3.1e+02 Score=25.04 Aligned_cols=14 Identities=7% Similarity=0.192 Sum_probs=6.0
Q ss_pred HHHHHHHHhcCCceE
Q 010867 398 EVEEFLRVTCCAFLV 412 (498)
Q Consensus 398 ~~~~~~~~~~g~~l~ 412 (498)
++.+.+.+. |+.+.
T Consensus 306 ~~~~~l~~~-gi~v~ 319 (384)
T 1eg5_A 306 TLQNLLSGY-GIYVS 319 (384)
T ss_dssp HHHHHHHHT-TEECB
T ss_pred HHHHHHhhC-CeEEe
Confidence 344444432 54443
No 122
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=20.37 E-value=4e+02 Score=24.00 Aligned_cols=64 Identities=8% Similarity=-0.052 Sum_probs=42.8
Q ss_pred HHHcCC-CCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhcCccEEEEcCc
Q 010867 93 LRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (498)
Q Consensus 93 L~~~gv-~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 157 (498)
+.+.|. ++++.|.... .+-.-..+.+++.+.|..+..+-|...+..-...++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDAT-SGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEESC-CSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344554 5666555544 455556666777789987665555545556667888899999998864
No 123
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=20.27 E-value=3.5e+02 Score=25.06 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=31.7
Q ss_pred CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCC----CChhHHHHHHhhcCccEEEEcC
Q 010867 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT----LGPGAVNFILDHAEIDFVFVQD 156 (498)
Q Consensus 98 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~----~~~~~l~~~l~~~~~~~vi~~~ 156 (498)
+++||.|.+..+...... ..-++...|+.++.++.. ...+++...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 567887777765443211 223455567655544322 2556777777644556665543
No 124
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.23 E-value=4.1e+02 Score=24.50 Aligned_cols=54 Identities=2% Similarity=-0.085 Sum_probs=27.0
Q ss_pred CCCCCEEEEEeCCchhHHHHHHHHHHcCCeEeecCCCCChhHHHHHHhhc---CccEEEEc
Q 010867 98 AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHA---EIDFVFVQ 155 (498)
Q Consensus 98 v~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~~~l~~~~~~~~l~~~l~~~---~~~~vi~~ 155 (498)
.++||.|.+..+....+. -++...|+.+++++. ...+++...++.. ++++|++.
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 345666655555443332 234445665555543 3455566665543 44555443
Done!