BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010868
(498 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JRF4|MUTYH_ARATH A/G-specific adenine DNA glycosylase OS=Arabidopsis thaliana GN=MYH
PE=3 SV=1
Length = 630
Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/419 (61%), Positives = 309/419 (73%), Gaps = 28/419 (6%)
Query: 70 DIEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQT 129
DIEDLFSE E +KIR LL WYD N+R+LPWR R E EKE+RAY VWVSE+MLQQT
Sbjct: 118 DIEDLFSENETQKIRMGLLDWYDVNKRDLPWRNRRS---ESEKERRAYEVWVSEIMLQQT 174
Query: 130 RVQTVIDYYNRWMTKWPTIHHLAKASLE-------------------EVNEMWAGLGYYR 170
RVQTV+ YY RWM KWPTI+ L +ASLE EVNEMWAGLGYYR
Sbjct: 175 RVQTVMKYYKRWMQKWPTIYDLGQASLENLIVSRSRELSFLRGNEKKEVNEMWAGLGYYR 234
Query: 171 RARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVL 230
RARFLLEGAKM+VA +GFPN S L KV GIG YTAGAIASIAF E VPVVDGNVIRVL
Sbjct: 235 RARFLLEGAKMVVAGTEGFPNQASSLMKVKGIGQYTAGAIASIAFNEAVPVVDGNVIRVL 294
Query: 231 ARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVS 290
ARLKAISANPKD T +NFWKLA QLVD RPGDFNQSLMELGA +CT P+C+SCPVS
Sbjct: 295 ARLKAISANPKDRLTARNFWKLAAQLVDPSRPGDFNQSLMELGATLCTVSKPSCSSCPVS 354
Query: 291 DKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILV 350
+C+A+S+S+ + ++ VT YP KV+KA+ RHD CV+EI ER Q G F+LV
Sbjct: 355 SQCRAFSLSEENRTISVTDYPTKVIKAKPRHDFCCVCVLEI----HNLERNQSGGRFVLV 410
Query: 351 KRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKS--FNLDPRNNCSIILREDVGE 408
KR ++GLLAGLWEFPS+IL+ E D TRR A +LK++ F+++ + C+I+ RE++GE
Sbjct: 411 KRPEQGLLAGLWEFPSVILNEEADSATRRNAINVYLKEAFRFHVELKKACTIVSREELGE 470
Query: 409 FVHIFSHIRLKVHVELLVLCIKGGIDKWVEKQDKGTLSWKCVDGGTLASMGLTSGVRKV 467
FVHIF+HIR KV+VELLV+ + GG + + Q K TL+WKCV L+++GLTS VRKV
Sbjct: 471 FVHIFTHIRRKVYVELLVVQLTGGTEDLFKGQAKDTLTWKCVSSDVLSTLGLTSAVRKV 529
>sp|Q99P21|MUTYH_MOUSE A/G-specific adenine DNA glycosylase OS=Mus musculus GN=Mutyh PE=2
SV=2
Length = 515
Score = 321 bits (823), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 177/392 (45%), Positives = 227/392 (57%), Gaps = 57/392 (14%)
Query: 74 LFSE-KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQ 132
LFS+ +V R +LL WYD+ +R+LPWR ++ +E ++RAY VWVSEVMLQQT+V
Sbjct: 57 LFSDVADVTAFRSNLLSWYDQEKRDLPWRNLAK--EEANSDRRAYAVWVSEVMLQQTQVA 114
Query: 133 TVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPN 191
TVIDYY RWM KWP + LA ASLEEVN++W+GLGYY R R L EGA+ +V E G P
Sbjct: 115 TVIDYYTRWMQKWPKLQDLASASLEEVNQLWSGLGYYSRGRRLQEGARKVVEELGGHMPR 174
Query: 192 TVSDLRKV-PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFW 250
T L+++ PG+G YTAGAIASIAF +V VVDGNV+RVL R++AI A+P T + W
Sbjct: 175 TAETLQQLLPGVGRYTAGAIASIAFDQVTGVVDGNVLRVLCRVRAIGADPTSTLVSHHLW 234
Query: 251 KLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKR--------- 301
LA QLVD RPGDFNQ+ MELGA +CTP P C+ CPV C+AY +R
Sbjct: 235 NLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCSHCPVQSLCRAYQRVQRGQLSALPGR 294
Query: 302 -----------------------DNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDES 338
D S+ V ++P K + R + SA CVVE G
Sbjct: 295 PDIEECALNTRQCQLCLTSSSPWDPSMGVANFPRKASRRPPREEYSATCVVEQPGAIG-- 352
Query: 339 ERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC 398
+ +LV+R D GLLAGLWEFPS+ L E +E K+ + + C
Sbjct: 353 -----GPLVLLVQRPDSGLLAGLWEFPSVTL----------EPSEQHQHKALLQELQRWC 397
Query: 399 S---IILREDVGEFVHIFSHIRLKVHVELLVL 427
I + +GE +HIFSHI+L V L L
Sbjct: 398 GPLPAIRLQHLGEVIHIFSHIKLTYQVYSLAL 429
>sp|Q8R5G2|MUTYH_RAT A/G-specific adenine DNA glycosylase OS=Rattus norvegicus GN=Mutyh
PE=2 SV=1
Length = 516
Score = 313 bits (803), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 230/389 (59%), Gaps = 51/389 (13%)
Query: 74 LFSE-KEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQ 132
LFS+ +V R++LL WYD+ +R+LPWR+R + +E ++RAY VWVSEVMLQQT+V
Sbjct: 57 LFSDIADVTAFRRNLLSWYDQEKRDLPWRKRVK--EETNLDRRAYAVWVSEVMLQQTQVA 114
Query: 133 TVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPN 191
TVIDYY RWM KWPT+ LA ASLEEVN++W+GLGYY R R L EGA+ +V E G P
Sbjct: 115 TVIDYYTRWMQKWPTLQDLASASLEEVNQLWSGLGYYSRGRRLQEGARKVVEELGGHVPR 174
Query: 192 TVSDLRKV-PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFW 250
T L+++ PG+G YTAGAIASIAF +V VVDGNVIRVL R++AI A+P + + W
Sbjct: 175 TAETLQQLLPGVGRYTAGAIASIAFDQVTGVVDGNVIRVLCRVRAIGADPTSSFVSHHLW 234
Query: 251 KLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAY-------------- 296
LA QLVD RPGDFNQ+ MELGA +CTP P C CPV C+A+
Sbjct: 235 DLAQQLVDPARPGDFNQAAMELGATVCTPQRPLCNHCPVQSLCRAHQRVGQGRLSALPGS 294
Query: 297 ------------------SMSKRDNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDES 338
S + D ++ V ++P K + R + SA CVVE G
Sbjct: 295 PDIEECALNTRQCQLCLPSTNPWDPNMGVVNFPRKASRRPPREEYSATCVVEQPGATG-- 352
Query: 339 ERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNC 398
+ +LV+R + GLLAGLWEFPS+ L+ + + + L++ +
Sbjct: 353 -----GPLILLVQRPNSGLLAGLWEFPSVTLE-----PSGQHQHKALLQELQHWSAPLPT 402
Query: 399 SIILREDVGEFVHIFSHIRLKVHVELLVL 427
+ + + +GE +H+FSHI+L V L L
Sbjct: 403 TPL--QHLGEVIHVFSHIKLTYQVYSLAL 429
>sp|Q9UIF7|MUTYH_HUMAN A/G-specific adenine DNA glycosylase OS=Homo sapiens GN=MUTYH PE=1
SV=1
Length = 546
Score = 306 bits (784), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/386 (44%), Positives = 221/386 (57%), Gaps = 54/386 (13%)
Query: 79 EVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYY 138
EV R SLL WYD+ +R+LPWR R+E E + ++RAY VWVSEVMLQQT+V TVI+YY
Sbjct: 89 EVTAFRGSLLSWYDQEKRDLPWRRRAED--EMDLDRRAYAVWVSEVMLQQTQVATVINYY 146
Query: 139 NRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLR 197
WM KWPT+ LA ASLEEVN++WAGLGYY R R L EGA+ +V E G P T L+
Sbjct: 147 TGWMQKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQ 206
Query: 198 KV-PGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
++ PG+G YTAGAIASIAF + VVDGNV RVL R++AI A+P T + W LA QL
Sbjct: 207 QLLPGVGRYTAGAIASIAFGQATGVVDGNVARVLCRVRAIGADPSSTLVSQQLWGLAQQL 266
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKR--------------- 301
VD RPGDFNQ+ MELGA +CTP P C+ CPV C+A ++
Sbjct: 267 VDPARPGDFNQAAMELGATVCTPQRPLCSQCPVESLCRARQRVEQEQLLASGSLSGSPDV 326
Query: 302 --------------------DNSVLVTSYPMKVLKARQRHDVSAACVVEILGGNDESERT 341
D ++ V ++P K + R + SA CV+E G
Sbjct: 327 EECAPNTGQCHLCLPPSEPWDQTLGVVNFPRKASRKPPREESSATCVLEQPGALGAQ--- 383
Query: 342 QPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAAECFLKKSFNLDPRNNCSII 401
+LV+R + GLLAGLWEFPS+ + + +R+A L++ P +
Sbjct: 384 -----ILLVQRPNSGLLAGLWEFPSVTWEPSEQL--QRKALLQELQRWAGPLPATH---- 432
Query: 402 LREDVGEFVHIFSHIRLKVHVELLVL 427
LR +GE VH FSHI+L V L L
Sbjct: 433 LRH-LGEVVHTFSHIKLTYQVYGLAL 457
>sp|Q10159|MYH1_SCHPO A/G-specific adenine DNA glycosylase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=myh1 PE=1 SV=1
Length = 461
Score = 238 bits (607), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 211/392 (53%), Gaps = 57/392 (14%)
Query: 75 FSEKEVKKIRQSLLQWYDKNQRELPWR--------ERSESDKEEEKEKRAYGVWVSEVML 126
+++ EV++ R+SL+Q+YDK +R LPWR E S + E+ +R Y V VSE+ML
Sbjct: 13 YTQLEVERFRESLIQFYDKTKRILPWRKKECIPPSEDSPLEDWEQPVQRLYEVLVSEIML 72
Query: 127 QQTRVQTVIDYYNRWMTKWPTIHHLAKASLE-EVNEMWAGLGYYRRARFLLEGAKMIVA- 184
QQTRV+TV YY +WM PT+ A+A +V +W+G+G+Y R + L + + +
Sbjct: 73 QQTRVETVKRYYTKWMETLPTLKSCAEAEYNTQVMPLWSGMGFYTRCKRLHQACQHLAKL 132
Query: 185 EGDGFPNTVSDLRK-VPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDT 243
P T + K +PG+G YTAGA+ SIA+K+ +VDGNVIRVL+R AI ++
Sbjct: 133 HPSEIPRTGDEWAKGIPGVGPYTAGAVLSIAWKQPTGIVDGNVIRVLSRALAIHSDCSKG 192
Query: 244 STVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSK--R 301
WKLA +LVD RPGDFNQ+LMELGA+ CTP +P C+ CP+S+ C+AY R
Sbjct: 193 KANALIWKLANELVDPVRPGDFNQALMELGAITCTPQSPRCSVCPISEICKAYQEQNVIR 252
Query: 302 DNSVL--------------------------VTSYPMKVLKARQRHDVSAACVVEILGGN 335
D + + V YP+ K +QR + + +V I
Sbjct: 253 DGNTIKYDIEDVPCNICITDIPSKEDLQNWVVARYPVHPAKTKQREERA---LVVIFQKT 309
Query: 336 DESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGET-----DITTRREAAECFLKKSF 390
D S + + F++ KR GLLAGLW+FP+I E+ D ++ A+ S
Sbjct: 310 DPSTK---EKFFLIRKRPSAGLLAGLWDFPTIEFGQESWPKDMDAEFQKSIAQWISNDSR 366
Query: 391 NLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422
+L I + G ++HIFSHIR HV
Sbjct: 367 SL-------IKKYQSRGRYLHIFSHIRKTSHV 391
>sp|O31584|YFHQ_BACSU Probable A/G-specific adenine glycosylase YfhQ OS=Bacillus subtilis
(strain 168) GN=yfhQ PE=2 SV=1
Length = 369
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/353 (35%), Positives = 185/353 (52%), Gaps = 36/353 (10%)
Query: 71 IEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTR 130
+ED +K++++ R L+ W+++ QR LPWRE ++ Y VWVSEVMLQQTR
Sbjct: 4 LEDKLKQKDIQQFRDDLISWFEREQRVLPWRE----------DQDPYKVWVSEVMLQQTR 53
Query: 131 VQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDGF- 189
V+TVI Y+ R++ ++PT+ LA A E+V + W GLGYY R R L K + E G
Sbjct: 54 VETVIPYFLRFVEQFPTVEALADADEEKVLKAWEGLGYYSRVRNLQSAVKEVKQEYGGIV 113
Query: 190 PNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNF 249
P D + G+G YT GA+ SIA+ + +P VDGNV+RV++R+ +I + T F
Sbjct: 114 PPDEKDFGGLKGVGPYTKGAVLSIAYNKPIPAVDGNVMRVMSRILSIWDDIAKPKTRTIF 173
Query: 250 WKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTS 309
+ +P +FNQ LMELGA+ICTP +P+C CPV C A+
Sbjct: 174 EDAIRAFISKEKPSEFNQGLMELGALICTPKSPSCLLCPVQQHCSAFEEGTE------RE 227
Query: 310 YPMKVLKARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIIL 369
P+K K + AA V+ T DG + KR +GLLA LWEFP+ L
Sbjct: 228 LPVKSKKKKPGIKTMAAIVL-----------TDEDGQVYIHKRPSKGLLANLWEFPN--L 274
Query: 370 DGETDITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHV 422
+ + I T RE FL+ + + + + G H+F+H+ + V
Sbjct: 275 ETQKGIKTEREQLIAFLENEYGIQAD------ISDLQGVVEHVFTHLVWNISV 321
>sp|Q05869|MUTY_SALTY A/G-specific adenine glycosylase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=mutY PE=3 SV=1
Length = 350
Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 124/365 (33%), Positives = 175/365 (47%), Gaps = 51/365 (13%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW + K Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPW----------QINKTPYKVWLSEVMLQQTQVTTVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T +++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGEFPQTFAEI 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S+A + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYAVSGWPGKKEVENTLWTLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLK 316
+ FNQ++M+LGA++CT P CT CP+ + C A + S P + L
Sbjct: 172 TPARGVERFNQAMMDLGAMVCTRSKPKCTLCPLQNGCIA--AAHESWSRYPGKKPKQTLP 229
Query: 317 ARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDIT 376
R + + +L N E L +R GL GL+ FP + E
Sbjct: 230 ERTGYFL-------LLQHNQE---------IFLAQRPPSGLWGGLYCFPQFAREDELR-- 271
Query: 377 TRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV-----HVELLVLCIKG 431
E ++ N D N + + F H FSH L + V L C+
Sbjct: 272 ------EWLAQRHVNAD---NLT-----QLNAFRHTFSHFHLDIVPMWLPVSSLDACMDE 317
Query: 432 GIDKW 436
G W
Sbjct: 318 GSALW 322
>sp|P17802|MUTY_ECOLI A/G-specific adenine glycosylase OS=Escherichia coli (strain K12)
GN=mutY PE=1 SV=1
Length = 350
Score = 185 bits (470), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 125/356 (35%), Positives = 178/356 (50%), Gaps = 70/356 (19%)
Query: 79 EVKKIRQSLLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDY 137
+ + +L WYDK R+ LPW + +K Y VW+SEVMLQQT+V TVI Y
Sbjct: 2 QASQFSAQVLDWYDKYGRKTLPW----------QIDKTPYKVWLSEVMLQQTQVATVIPY 51
Query: 138 YNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVA-EGDGFPNTVSDL 196
+ R+M ++PT+ LA A L+EV +W GLGYY RAR L + A+ + G FP T ++
Sbjct: 52 FERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEV 111
Query: 197 RKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL 256
+PG+G TAGAI S++ + P++DGNV RVLAR A+S P W L+ Q+
Sbjct: 112 AALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQV 171
Query: 257 VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLK 316
+ FNQ++M+LGA+ICT P C+ CP+ + C ++ +NS + YP K K
Sbjct: 172 TPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGC----IAAANNSWAL--YPGK--K 223
Query: 317 ARQRHDVSAACVVEILGGNDESERTQPDGVFILVKRRDE---------GLLAGLWEFPSI 367
+Q ERT G F+L++ DE GL GL+ FP
Sbjct: 224 PKQ----------------TLPERT---GYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQF 264
Query: 368 ILDGETD---ITTRREAAECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKV 420
D E+ + R+ AA+ NL + F H FSH L +
Sbjct: 265 A-DEESLRQWLAQRQIAAD-------NLT-----------QLTAFRHTFSHFHLDI 301
>sp|P57617|MUTY_BUCAI A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mutY PE=3 SV=1
Length = 350
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/346 (32%), Positives = 173/346 (50%), Gaps = 48/346 (13%)
Query: 85 QSLLQWYDKNQR-ELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMT 143
Q +L WY KN R +LPW + K Y VW+SE+MLQQT V++ I Y+ +++
Sbjct: 8 QLVLNWYHKNGRKDLPW----------QINKTLYTVWISEIMLQQTTVKSAIPYFKKFIL 57
Query: 144 KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGI 202
+P I L + L++V +W+GLGYY RA+ + + A++I + G FP+ S++ ++PGI
Sbjct: 58 NFPNIKSLNDSKLDDVLYLWSGLGYYNRAKNIYKSAQIIKKKYKGIFPDQFSNIIQLPGI 117
Query: 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRP 262
G TAGAI S++ P++DGNV R+L R IS KD K W + +
Sbjct: 118 GRSTAGAILSLSLNFFYPILDGNVKRILVRYYGISGLLKDKKIEKKLWNIIESITPIHNT 177
Query: 263 GDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHD 322
G FNQ +M++GA IC + P CT CP+ +C A K + YP+K +K
Sbjct: 178 GKFNQGMMDIGASICISIKPKCTICPLKKECIAQIEKKWE------KYPLKNIKKTLPQK 231
Query: 323 VSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAA 382
+S ++ + + F L K ++ + L+ FP +E A
Sbjct: 232 ISWFIII------------KHENNFWLKKNTEQEIWKELFCFPKF---------KNKEEA 270
Query: 383 ECFLK-KSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVHVELLVL 427
+LK K N+ N C E++ F H FSH L ++ L+ L
Sbjct: 271 LIWLKEKKINI---NTC-----ENMISFFHKFSHFILHINPILIRL 308
>sp|P44320|MUTY_HAEIN A/G-specific adenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mutY PE=3 SV=1
Length = 378
Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 114/339 (33%), Positives = 161/339 (47%), Gaps = 48/339 (14%)
Query: 85 QSLLQWYDK-NQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMT 143
+S+L WYDK ++ LPW ++ K YGVW+SEVMLQQT+V TVI Y+ R++
Sbjct: 13 KSVLAWYDKFGRKHLPW----------QQNKTLYGVWLSEVMLQQTQVATVIPYFERFIK 62
Query: 144 KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGI 202
+P I LA AS +EV +W GLGYY RAR L + A+ + E +G FP + + G+
Sbjct: 63 TFPNITALANASQDEVLHLWTGLGYYARARNLHKAAQKVRDEFNGNFPTNFEQVWALSGV 122
Query: 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRP 262
G TAGAI S + P++DGNV RVLAR A+ + W L Q+ + R
Sbjct: 123 GRSTAGAILSSVLNQPYPILDGNVKRVLARYFAVEGWSGEKKVENRLWALTEQVTPTTRV 182
Query: 263 GDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHD 322
DFNQ++M++GA++C P C CP++ C AY T++ K ++
Sbjct: 183 ADFNQAMMDIGAMVCMRTKPKCDLCPLNIDCLAYKN---------TNWEKFPAKKPKKAM 233
Query: 323 VSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAA 382
IL N G L +R + GL GL+ FP
Sbjct: 234 PEKTTYFLILSKN---------GKVCLEQRENSGLWGGLFCFPQ---------------- 268
Query: 383 ECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421
F KS L + ++ F H FSH L +H
Sbjct: 269 --FEDKSSLLHFLAQEKVTHYQEWPSFRHTFSHFHLDIH 305
>sp|Q8K926|MUTY_BUCAP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=mutY PE=3 SV=1
Length = 347
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 126/214 (58%), Gaps = 12/214 (5%)
Query: 85 QSLLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMT 143
Q +L WY N R+ LPW+ K+K Y VW+SE+MLQQT V+T I Y+ +++
Sbjct: 8 QLILNWYHINGRKNLPWK----------KDKTLYKVWISEIMLQQTTVKTAIPYFKNFIS 57
Query: 144 KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGI 202
++P I L ++ L+++ +W+GLGYY+RA + + K+I E + FP SDL K+PGI
Sbjct: 58 RFPNIQSLNQSKLDDILCLWSGLGYYKRAENIYKTVKIIKEEFQEKFPTGFSDLIKLPGI 117
Query: 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRP 262
G TAGAI S++ P+++GNV R+L R I + + W L +
Sbjct: 118 GRSTAGAILSLSLDYFFPILEGNVKRILMRYYGIIGYVTEKKIEQKLWYLIELITPIHNT 177
Query: 263 GDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAY 296
G FNQ +M++GA+ICTP NP C CP+ KC AY
Sbjct: 178 GSFNQGIMDIGALICTPKNPKCNLCPLIQKCIAY 211
>sp|Q89A45|MUTY_BUCBP A/G-specific adenine glycosylase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mutY PE=3 SV=1
Length = 351
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 171/339 (50%), Gaps = 47/339 (13%)
Query: 85 QSLLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMT 143
Q++L WY R+ LPW+ + K Y W+SE+MLQQT+V+TVI YY +++
Sbjct: 8 QTILNWYHHFGRKTLPWQIK----------KNPYKTWISEIMLQQTQVKTVIPYYCKFIK 57
Query: 144 KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGI 202
++P I L+ + L+ + +W+GLGYY RAR + + AK++ + +G FPN+ +++ K+PGI
Sbjct: 58 RFPNIDTLSDSPLDSILNLWSGLGYYTRARNIYKTAKILKQKFNGIFPNSYAEIIKLPGI 117
Query: 203 GNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRP 262
G TAGAI S F ++DGN+ RVL R +I+ N K K WK +
Sbjct: 118 GKSTAGAILSFGFNLYSCILDGNIKRVLIRYYSININNKYIE--KLLWKTIESITPIYHT 175
Query: 263 GDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHD 322
FNQ+L+++GA+IC NP C CP+ C++Y +N + + K ++H
Sbjct: 176 NKFNQALIDIGALICLKSNPKCNICPLKSTCKSY----LNNKLFQIN-----CKKNKKHI 226
Query: 323 VSAACVVEILGGNDESERTQPDGVFILVKRRDEGLLAGLWEFPSIILDGETDITTRREAA 382
+ ++ Q L KR++ G+ L+ FP I + DI + +
Sbjct: 227 IPKTKYWFLI--------LQYKNYIFLEKRQNLGIWKKLFCFPQFI--RQNDILSWIQ-- 274
Query: 383 ECFLKKSFNLDPRNNCSIILREDVGEFVHIFSHIRLKVH 421
+NN I + EF H SH+ L ++
Sbjct: 275 ------------KNNTKIKKINILNEFKHKLSHLTLYIN 301
>sp|A0R567|MUTY_MYCS2 A/G-specific adenine glycosylase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mutY PE=3 SV=1
Length = 293
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 110/205 (53%), Gaps = 12/205 (5%)
Query: 87 LLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP 146
LL WYD +R+LPWR S A+ + VSE MLQQT V V ++ W+ +WP
Sbjct: 8 LLSWYDHARRDLPWRRPGVS---------AWQILVSEFMLQQTPVSRVEPIWSAWIERWP 58
Query: 147 TIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNY 205
T A A EV W LGY RRA+ L E A +I +E D P V L +PGIG Y
Sbjct: 59 TASATAAAGPAEVLRAWGKLGYPRRAKRLHECAVVIASEYDDVVPRDVDTLLTLPGIGAY 118
Query: 206 TAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDF 265
TA A+A A++ VPVVD NV RV+ R A+ ++ ++ +A L F
Sbjct: 119 TARAVACFAYQASVPVVDTNVRRVVTR--AVHGAADAPASTRDLDMVAALLPPDTTAPTF 176
Query: 266 NQSLMELGAVICTPLNPNCTSCPVS 290
+ +LMELGA +CT +P C CP+S
Sbjct: 177 SAALMELGATVCTARSPRCGICPLS 201
>sp|P29588|GTMR_METTF G/T mismatches repair enzyme OS=Methanobacterium thermoformicicum
PE=1 SV=1
Length = 221
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 13/223 (5%)
Query: 76 SEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVI 135
+ K+ K ++L +++ ++R+ PWR + Y + ++E++L++T V
Sbjct: 5 TNKKRKVFVSTILTFWNTDRRDFPWRHTRDP----------YVILITEILLRRTTAGHVK 54
Query: 136 DYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYY-RRARFLLEGAKMIVAEGDG-FPNTV 193
Y+++ K+ + K E+ + +G +RA L E A++++ + G P
Sbjct: 55 KIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNR 114
Query: 194 SDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLA 253
+ +PG+G YT A+ +AF + +VD N +RV+ R S + + K W+LA
Sbjct: 115 KAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNH-KALWELA 173
Query: 254 TQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAY 296
LV + DFN LM+ A+IC P P C C +S C Y
Sbjct: 174 ETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYY 216
>sp|P46230|MUTY_AERHY A/G-specific adenine glycosylase (Fragment) OS=Aeromonas hydrophila
GN=mutY PE=3 SV=1
Length = 99
Score = 90.5 bits (223), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 62/97 (63%), Gaps = 11/97 (11%)
Query: 87 LLQWYDKNQRE-LPWRERSESDKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKW 145
+L WY + R+ LPW +++K Y VWVSE+MLQQT+V TVI YY R+M ++
Sbjct: 13 ILDWYQIHGRKTLPW----------QQDKTPYRVWVSEIMLQQTQVATVIPYYQRFMARF 62
Query: 146 PTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGAKMI 182
P + LA+A ++EV W GLGYY RAR L + A+ I
Sbjct: 63 PDVQALAQAPIDEVLHHWTGLGYYARARNLHKAAQQI 99
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=nth PE=3 SV=1
Length = 213
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 7/187 (3%)
Query: 112 KEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR- 170
KE + V +S V+ Q+TR + + + T LAKA E++ ++ G YR
Sbjct: 18 KETDPFRVLISTVLSQRTRDENTEKASKKLFEVYRTPQELAKAKPEDLYDLIKESGMYRQ 77
Query: 171 RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRV 229
+A ++E ++++V + G P+++ +L K+PG+G TA + + FK+ VD +V R+
Sbjct: 78 KAERIVEISRILVEKYGGRVPDSLEELLKLPGVGRKTANIVLWVGFKKPALAVDTHVHRI 137
Query: 230 LARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPV 289
RL + T T + + +L+ G N S++E G IC P NP C C +
Sbjct: 138 SNRLGWVK-----TRTPEETEEALKKLLPEDLWGPINGSMVEFGRRICKPQNPLCEECFL 192
Query: 290 SDKCQAY 296
+ C+ Y
Sbjct: 193 KNHCEFY 199
>sp|P46303|UVEN_MICLC Ultraviolet N-glycosylase/AP lyase OS=Micrococcus luteus (strain
ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB
9278 / NCTC 2665 / VKM Ac-2230) GN=pdg PE=1 SV=2
Length = 279
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYR-RARFL 175
+ + V+ V+ QT V ++P H +A A+ E+ E+ G+YR +A +
Sbjct: 45 FELLVATVLSAQTTDVRVNAATPALFARFPDAHAMAAATEPELQELVRSTGFYRNKASAI 104
Query: 176 LEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234
L ++ +V DG P + DL +PG+G TA + AF + VD + R+ RL
Sbjct: 105 LRLSQELVGRHDGEVPARLEDLVALPGVGRKTAFVVLGNAFGQPGITVDTHFGRLARRLG 164
Query: 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQ 294
+T K + + + + L+ G +C P C CP++ C
Sbjct: 165 FTD----ETDPGKGRARRGRPVPPARDWTMLSHRLIFHGRRVCHARRPACGRCPIARWCP 220
Query: 295 AYSMSKRD 302
+Y+ + D
Sbjct: 221 SYAAGETD 228
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1)
GN=NTH1 PE=1 SV=1
Length = 238
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 20/196 (10%)
Query: 112 KEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWP-------------TIHHLAKASLEE 158
+E+R + + VS ++ QT+ + + R P TI +A + ++
Sbjct: 44 EEERRFHILVSLLLSSQTKDEVTYEAMARLRKLLPESAATDGEARGGLTIERVANSDVKH 103
Query: 159 VNEMWAGLGYYRRARFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEV 218
+NE +G++ R L+ I+ E G P + DL +PGIGN A S A
Sbjct: 104 INECIKKVGFHNRKAANLKKIAEILRE-KGLPREMKDLISLPGIGNKMALLYMSHACNRT 162
Query: 219 VPV-VDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVIC 277
V + VD +V R+ R+ + T V++ + ++V N L+ G IC
Sbjct: 163 VGISVDTHVHRISNRIGLVR-----TRDVESTRRELERVVPRKEWKTINNILVGFGQTIC 217
Query: 278 TPLNPNCTSCPVSDKC 293
P C C + +C
Sbjct: 218 VAKRPRCEECCIRGRC 233
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans
GN=nth-1 PE=1 SV=2
Length = 298
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 81/174 (46%), Gaps = 8/174 (4%)
Query: 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRR-ARFL 175
+ V V+ ++ QTR + R +I + + + ++ + +G+Y+R A +L
Sbjct: 68 FQVLVALMLSSQTRDEVNAAAMKRLKDHGLSIGKILEFKVPDLETILCPVGFYKRKAVYL 127
Query: 176 LEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPV-VDGNVIRVLARL 233
+ AK++ + G P+++ L +PG+G A + IA+ E V + VD +V R+ RL
Sbjct: 128 QKTAKILKDDFSGDIPDSLDGLCALPGVGPKMANLVMQIAWGECVGIAVDTHVHRISNRL 187
Query: 234 KAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSC 287
I TST + K L+ N L+ G + C P+ P C +C
Sbjct: 188 GWIK-----TSTPEKTQKALEILLPKSEWQPINHLLVGFGQMQCQPVRPKCGTC 236
>sp|Q89AW4|END3_BUCBP Endonuclease III OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nth PE=3 SV=1
Length = 215
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 117 YGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYY-RRARFL 175
+ + +S ++ QT + V R T L + E LG Y +++ +
Sbjct: 35 FELLISVMLSAQTTDRMVNKTTQRLFGIANTPSGFISIGLHAIRENIRKLGLYNKKSSNI 94
Query: 176 LEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLK 234
L ++++ G PN DL +PG+G TA I ++ FK+ VD +V R+ R+
Sbjct: 95 LRTCEILLKRYGGKVPNNREDLESLPGVGRKTANVILNVIFKKKTIAVDTHVFRLCNRIG 154
Query: 235 AISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQ 294
+TV K +V +F+ + G ICT P C+ C +S C+
Sbjct: 155 FAKG-----TTVLTVEKKLLNIVPEKFKLNFHAWFIMHGRYICTSRVPKCSKCIISSLCE 209
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1
Length = 300
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 14/196 (7%)
Query: 107 DKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGL 166
D + R Y V +S ++ QT+ Q R + T+ + + + + + +
Sbjct: 108 DASAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVESILQTDDDTLGRLIYPV 167
Query: 167 GYYRRARFLLEGAKMIVA---EGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPV-V 222
G++R ++ I+ EGD P +V++L +PG+G A ++A+ + + V
Sbjct: 168 GFWRNKVKYIKQTTAILQQRYEGD-IPASVAELVALPGVGPKMAHLAMAVAWGTISGIAV 226
Query: 223 DGNVIRVLARL---KAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTP 279
D +V R+ RL K ++ P++T KN + +++ S + N L+ G IC P
Sbjct: 227 DTHVHRIANRLRWTKKMTKTPEETR--KNLEEWLPRVLWS----EVNGLLVGFGQQICLP 280
Query: 280 LNPNCTSCPVSDKCQA 295
++P C +C C A
Sbjct: 281 VHPRCQACLNKALCPA 296
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1
Length = 305
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 85/187 (45%), Gaps = 12/187 (6%)
Query: 107 DKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGL 166
D + R Y V +S ++ QT+ Q R + T+ + + + + +
Sbjct: 113 DPSASPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDSTLGALIYPV 172
Query: 167 GYYR-RARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPV-VD 223
G++R + +++ + + ++ DG P +V++L +PG+G A ++A+ V + VD
Sbjct: 173 GFWRSKVKYIKQTSAILQQRYDGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVD 232
Query: 224 GNVIRVLARL---KAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPL 280
+V R+ RL K + +P++T W L +L + N L+ G C P+
Sbjct: 233 THVHRIANRLRWTKKATKSPEETRRALEEW-LPRELWS-----EINGLLVGFGQQTCLPI 286
Query: 281 NPNCTSC 287
P C +C
Sbjct: 287 RPRCQAC 293
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=nth1 PE=1 SV=1
Length = 355
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 159 VNEMWAGLGYYRRARFLLEGAKMIVAE---GDGFPNTVSDLRKVPGIGNYTAGAIASIAF 215
+N++ +G++ R L+ I++E GD P+TV DL +PG+G SIA+
Sbjct: 94 LNKLIEKVGFHNRKTIYLKQMARILSEKFQGD-IPDTVEDLMTLPGVGPKMGYLCMSIAW 152
Query: 216 KEVVPV-VDGNVIRVLARLKAISANPKD-TSTVKNFWKLATQLVDSCRPGDFNQSLMELG 273
+ V + VD +V R+ L + ++ T W L +L + N +L+ G
Sbjct: 153 NKTVGIGVDVHVHRICNLLHWCNTKTEEQTRAALQSW-LPKELW-----FELNHTLVGFG 206
Query: 274 AVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLVTSYPMKVLKARQRHDVS 324
IC P C C +S K S K + + +T +K +K ++ S
Sbjct: 207 QTICLPRGRRCDMCTLSSKGLCPSAFKEKSGITITKRKVKTIKRVKKRPAS 257
>sp|P39788|END3_BACSU Probable endonuclease III OS=Bacillus subtilis (strain 168) GN=nth
PE=3 SV=1
Length = 219
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 8/154 (5%)
Query: 156 LEEVNEMWAGLGYYR-RARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASI 213
LEE+ + +G YR +A+ + + +KMI+ + G P +L K+PG+G TA + S+
Sbjct: 70 LEELQQDIKSIGLYRNKAKNIQKLSKMIIEDYGGEVPRDRDELVKLPGVGRKTANVVVSV 129
Query: 214 AFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELG 273
AF VD +V RV RL +V K + V + L+ G
Sbjct: 130 AFGVPAIAVDTHVERVSKRLGICRWK----DSVLEVEKTLMRKVPKEDWSVTHHRLIFFG 185
Query: 274 AVICTPLNPNCTSCPVSDKCQAYSMSKRDNSVLV 307
C +P C CP+ C+ KRD LV
Sbjct: 186 RYHCKAQSPRCAECPLLSLCR--EGQKRDKKGLV 217
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2
Length = 312
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 85/195 (43%), Gaps = 12/195 (6%)
Query: 107 DKEEEKEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGL 166
D + R Y V +S ++ QT+ Q R + T+ + + + ++ +
Sbjct: 120 DSSAPPKVRRYQVLLSLMLSSQTKDQVTAGAMQRLRARGLTVDSILQTDDATLGKLIYPV 179
Query: 167 GYYRRARFLLEGAKMIVAE--GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPV-VD 223
G++R ++ I+ + G P +V++L +PG+G A ++A+ V + VD
Sbjct: 180 GFWRSKVKYIKQTSAILQQHYGGDIPASVAELVALPGVGPKMAHLAMAVAWGTVSGIAVD 239
Query: 224 GNVIRVLARL---KAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPL 280
+V R+ RL K + +P++T W L +L + N L+ G C P+
Sbjct: 240 THVHRIANRLRWTKKATKSPEETRAALEEW-LPRELWH-----EINGLLVGFGQQTCLPV 293
Query: 281 NPNCTSCPVSDKCQA 295
+P C +C C A
Sbjct: 294 HPRCHACLNQALCPA 308
>sp|P73715|END3_SYNY3 Endonuclease III OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=nth PE=3 SV=1
Length = 219
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 12/161 (7%)
Query: 144 KWPTIHHLAKASLEEVNEMWAGLGYYRRARFLLEGA-KMIVAEGDG-FPNTVSDLRKVPG 201
++P + LA +E+ E+ G++R ++GA + IV E DG P + +L +PG
Sbjct: 66 RYPDANALAYGDRQEIEELIHSTGFFRNKAKNIQGACRKIVEEFDGEVPQRMEELLTLPG 125
Query: 202 IGNYTAGAIASIAFKEVVPV-VDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSC 260
+ TA + + AF + V VD +V R+ RL A ++ KL Q
Sbjct: 126 VARKTANVVLAHAFGILAGVTVDTHVKRLSQRLGLTKAT-DPIRIERDLMKLIPQ----- 179
Query: 261 RPG--DFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMS 299
P +F+ ++ G +C P C C ++ C + S
Sbjct: 180 -PDWENFSIHIIYHGRAVCAARKPLCGECQLAHLCPSAQAS 219
>sp|O05956|END3_RICPR Endonuclease III OS=Rickettsia prowazekii (strain Madrid E) GN=nth
PE=3 SV=1
Length = 212
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 190 PNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNF 249
PN +L K+PG+G TA + + F VD +V RV R+ N T
Sbjct: 105 PNNFKELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRVSKRIGLAKGN-----TAAIV 159
Query: 250 WKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAY 296
K Q++D + L+ G IC P C CP+ + C+ Y
Sbjct: 160 EKELLQIIDEKWLTYAHHWLILHGRYICKARKPGCNICPIKEYCEYY 206
>sp|Q4UK93|END3_RICFE Endonuclease III OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=nth PE=3 SV=1
Length = 213
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 168 YYRRARFLLEGAKMIVAE-GDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
+ +A+ ++ K++++ PN +L K+PG+G TA + + F VD +V
Sbjct: 82 FNSKAKNIIALCKILISNYQSSVPNDFKELIKLPGVGRKTANVVLNCLFGMPTMAVDTHV 141
Query: 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTS 286
RV R+ N + K Q+++ + L+ G IC P+C
Sbjct: 142 FRVAKRIGLARGNSPEIVE-----KELLQIINEKWLTHAHHWLILHGRYICKARKPDCDI 196
Query: 287 CPVSDKCQAYS 297
CP+ + C+ Y+
Sbjct: 197 CPIKEYCEYYN 207
>sp|P57219|END3_BUCAI Endonuclease III OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nth PE=3 SV=1
Length = 210
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 156 LEEVNEMWAGLGYYR-RARFLLEGAKMIVAEGDGF-PNTVSDLRKVPGIGNYTAGAIASI 213
LE + +G Y +A ++ + +I+ + + PN +L +PG+G TA I +I
Sbjct: 69 LERLKNYIKDIGLYNTKALNIIRTSFIILTKYNSIVPNNRIELESLPGVGRKTANIILNI 128
Query: 214 AFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELG 273
FK+ VD +V RV R N VK + ++V S +F+ + G
Sbjct: 129 LFKKKTIAVDTHVFRVCNR-----TNFAKGKNVKIVEEKLIKVVPSIFKLNFHSWFILHG 183
Query: 274 AVICTPLNPNCTSCPVSDKCQ 294
ICT C C + C+
Sbjct: 184 RYICTARKIKCNICLIFKLCE 204
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0613 PE=3 SV=2
Length = 344
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 24/206 (11%)
Query: 112 KEKRAYGVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRR 171
K+K + V +S ++ +T+ + + + + + L E++ ++ G+Y+
Sbjct: 22 KDKDPFKVLISTIISARTKDEVTEEVSKKLFKEIKDVDDLLNIDEEKLADLIYPAGFYKN 81
Query: 172 ARFLLEGAKMIVAEGDG--FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRV 229
L+ I+ E P+++ +L K+PG+G TA + ++AF + VD +V R+
Sbjct: 82 KAKNLKKLAKILKENYNGKVPDSLEELLKLPGVGRKTANLVITLAFNKDGICVDTHVHRI 141
Query: 230 LARLKAISANPKDTSTV-------KNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNP 282
R + + + + K +WK+ L L+ G IC+
Sbjct: 142 CNRWEIVDTETPEETEFELRKKLPKKYWKVINNL------------LVVFGREICSS-KS 188
Query: 283 NCTSC--PVSDKCQAYSMSKRDNSVL 306
C C + +KC Y K ++L
Sbjct: 189 KCDKCFKEIKEKCPYYEKIKHFENIL 214
>sp|Q92GH4|END3_RICCN Endonuclease III OS=Rickettsia conorii (strain ATCC VR-613 / Malish
7) GN=nth PE=3 SV=1
Length = 210
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 168 YYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
+ +A+ ++ K++++ PN L K+PG+G TA + + F VD +V
Sbjct: 82 FNSKAKNIIALCKILISNYQASVPNDFKALIKLPGVGRKTANVVLNCLFGMPTMAVDTHV 141
Query: 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTS 286
RV R I DT + L Q++D+ + L+ G IC P+C
Sbjct: 142 FRVANR---IGLAKGDTPEIVENELL--QIIDTKWLTHAHHWLILHGRYICKARKPDCDI 196
Query: 287 CPVSDKCQAY 296
CP+ + C Y
Sbjct: 197 CPIKEYCDYY 206
>sp|O49498|DML3_ARATH DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2
Length = 1044
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 196 LRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDT------------ 243
L ++ GIG +A + + K VD NV R+ RL + P
Sbjct: 584 LLEIEGIGLKSAECVRLLGLKHHAFPVDTNVGRIAVRLGLVPLEPLPNGVQMHQLFEYPS 643
Query: 244 --STVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSKR 301
S K W +L + + ++ G V CT PNC +CP+ +C+ ++ +
Sbjct: 644 MDSIQKYLWPRLCKLPQETL-YELHYQMITFGKVFCTKTIPNCNACPMKSECKYFASAYV 702
Query: 302 DNSVLVTS 309
+ VL+ S
Sbjct: 703 SSKVLLES 710
>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=nth PE=3 SV=1
Length = 212
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 6/127 (4%)
Query: 171 RARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRV 229
+A+ ++ ++++ PN +L K+PG+G TA + + F VD +V RV
Sbjct: 85 KAKNIIASCQILIKNYQASIPNDFKELVKLPGVGRKTANVVLNCLFAMPTMAVDTHVFRV 144
Query: 230 LARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPV 289
R+ N T V+ K Q++D + L+ G IC P+C C +
Sbjct: 145 SKRIGLAKGN--TTVIVE---KELLQIIDEKWLTHAHHWLVLHGRYICKARKPSCRICHI 199
Query: 290 SDKCQAY 296
+ C+ Y
Sbjct: 200 KEYCEYY 206
>sp|Q9SR66|DML2_ARATH DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=3 SV=2
Length = 1332
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 196 LRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDT------------ 243
L + G+G + + ++ ++ VD NV R+ RL + P
Sbjct: 876 LLSINGLGLKSVECVRLLSLHQIAFPVDTNVGRIAVRLGWVPLQPLPDELQMHLLELYPV 935
Query: 244 --STVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYSMSK 300
S K W +L D + + ++ G V CT + PNC +CP+ +C+ YS ++
Sbjct: 936 LESVQKYLWPRLCKL-DQKTLYELHYHMITFGKVFCTKVKPNCNACPMKAECRHYSSAR 993
>sp|P0AB83|END3_ECOLI Endonuclease III OS=Escherichia coli (strain K12) GN=nth PE=1 SV=1
Length = 211
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 168 YYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
Y +A +++ ++++ + +G P + L +PG+G TA + + AF VD ++
Sbjct: 82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHI 141
Query: 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDF----NQSLMELGAVICTPLNP 282
RV R + KN ++ +L+ P +F + L+ G C P
Sbjct: 142 FRVCNRTQFAPG--------KNVEQVEEKLLKVV-PAEFKVDCHHWLILHGRYTCIARKP 192
Query: 283 NCTSCPVSDKCQ 294
C SC + D C+
Sbjct: 193 RCGSCIIEDLCE 204
>sp|P0AB84|END3_ECOL6 Endonuclease III OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nth PE=3 SV=1
Length = 211
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 168 YYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
Y +A +++ ++++ + +G P + L +PG+G TA + + AF VD ++
Sbjct: 82 YNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHI 141
Query: 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDF----NQSLMELGAVICTPLNP 282
RV R + KN ++ +L+ P +F + L+ G C P
Sbjct: 142 FRVCNRTQFAPG--------KNVEQVEEKLLKVV-PAEFKVDCHHWLILHGRYTCIARKP 192
Query: 283 NCTSCPVSDKCQ 294
C SC + D C+
Sbjct: 193 RCGSCIIEDLCE 204
>sp|Q57748|Y300_METJA Uncharacterized HTH-type transcriptional regulator MJ0300
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0300
PE=4 SV=1
Length = 296
Score = 39.7 bits (91), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 183 VAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKD 242
V+EG G VS + ++P AG I ++VPVVD +V+R L +K S PK+
Sbjct: 235 VSEGYG----VSVVSEIPAKKAEDAGLI------KIVPVVDLDVVRYLYLVK--SRRPKN 282
Query: 243 TSTVKNFWKLATQL 256
S VK+FW+ T++
Sbjct: 283 PSAVKSFWEFVTKV 296
>sp|Q9CB92|END3_MYCLE Endonuclease III OS=Mycobacterium leprae (strain TN) GN=nth PE=3
SV=2
Length = 245
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 167 GYYR-RARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDG 224
G++R +A L+ + +V DG P+T+ DL +PG+G TA I AF VD
Sbjct: 91 GFFRNKAASLIRLGQALVERFDGEVPSTMVDLFTLPGVGRKTANVILGNAFGIPGITVDT 150
Query: 225 NVIRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNC 284
+ R++ R + + +D V++ +L++ + + ++ G +C P C
Sbjct: 151 HFGRLVRRWRWTAE--EDPVKVEH---AVGELIERDQWTLLSHRVIFHGRRVCHARKPAC 205
Query: 285 TSCPVSDKCQAYSMS 299
C ++ C ++ +
Sbjct: 206 GVCVLAKDCPSFGLG 220
>sp|Q9SJQ6|ROS1_ARATH Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2
Length = 1393
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 201 GIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKNFWKLATQL---- 256
G+G + + + + VD NV R+ RL + P S + ++ L
Sbjct: 949 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPMLESIQ 1008
Query: 257 ---------VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQAYS 297
+D + + ++ G V CT PNC +CP+ +C+ ++
Sbjct: 1009 KYLWPRLCKLDQKTLYELHYQMITFGKVFCTKSKPNCNACPMKGECRHFA 1058
>sp|P44319|END3_HAEIN Endonuclease III OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nth PE=3 SV=1
Length = 211
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 168 YYRRARFLLEGAKMIVAEGDG-FPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNV 226
+ +A +++ + ++ + +G P L + G+G TA + + AF VD ++
Sbjct: 82 FNSKAENIIKTCRDLIEKHNGEVPENREALEALAGVGRKTANVVLNTAFGHPTIAVDTHI 141
Query: 227 IRVLARLKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQSLMELGAVICTPLNPNCTS 286
RV R + KD V+ KL ++V + D + L+ G C P C S
Sbjct: 142 FRVCNRTNFAAG--KDVVKVEE--KL-LKVVPNEFKVDVHHWLILHGRYTCIARKPRCGS 196
Query: 287 CPVSDKCQ 294
C + D C+
Sbjct: 197 CIIEDLCE 204
>sp|O83754|END3_TREPA Endonuclease III OS=Treponema pallidum (strain Nichols) GN=nth PE=3
SV=1
Length = 211
Score = 35.4 bits (80), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 173 RFLLEGAKMIVAEGDGFPNTVSDLRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLAR 232
R + A++I P L +PG+G+ TA + ++ F VD +++R R
Sbjct: 91 RIIALSAELIERFAAQVPCDAHALESLPGVGHKTANVVLNMGFGIPTIAVDTHILRTAPR 150
Query: 233 LKAISANPKDTSTVKNFWKLATQLVDSCRPGDFNQS----LMELGAVICTPLNPNCTSCP 288
+ +S+ + ++ + P +F ++ G CT P CT C
Sbjct: 151 I-GLSSGRTPRAVERDLLVVT--------PREFRMHAHHWILLHGRYTCTARRPRCTECC 201
Query: 289 VSDKC 293
+ D C
Sbjct: 202 LRDLC 206
>sp|Q8LK56|DME_ARATH Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1
SV=2
Length = 1987
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 190 PNTVSD-LRKVPGIGNYTAGAIASIAFKEVVPVVDGNVIRVLARLKAISANPKDTSTVKN 248
P+ D L + G+G + + + + VD NV R+ R+ + P S +
Sbjct: 1528 PDKAKDYLLSIRGLGLKSVECVRLLTLHNLAFPVDTNVGRIAVRMGWVPLQPLPESLQLH 1587
Query: 249 FWKLATQL-------------VDSCRPGDFNQSLMELGAVICTPLNPNCTSCPVSDKCQA 295
+L L +D + + L+ G V CT PNC +CP+ +C+
Sbjct: 1588 LLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLITFGKVFCTKSRPNCNACPMRGECRH 1647
Query: 296 YS 297
++
Sbjct: 1648 FA 1649
>sp|Q3MHE8|SRPR_BOVIN Signal recognition particle receptor subunit alpha OS=Bos taurus
GN=SRPR PE=2 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 58 PEKKTALPLEEEDIEDLFSEKEVKKIRQSLLQWYDKNQRELPWRERSESDKEEEKEKRAY 117
P +K+ LP+ E+ E+L E+++++ R+ +Q + + + + S+SD +EK K+A
Sbjct: 189 PAEKSGLPVGPENGEELSKEEQIRRKREEFIQKHGRGMEK--SSKSSKSDAPKEKGKKAP 246
Query: 118 GVWVSEVMLQQTRVQTVIDYYNRWMTKWPTIHHLAKASLEEVNEMWAGLGYYRR 171
VW L + + V+DY PT + +A+ E + G G R+
Sbjct: 247 RVWA----LGGSANKEVLDYST------PTTNGAPEAAPPEDINLIRGTGPGRQ 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,844,531
Number of Sequences: 539616
Number of extensions: 7806053
Number of successful extensions: 31254
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 29393
Number of HSP's gapped (non-prelim): 1507
length of query: 498
length of database: 191,569,459
effective HSP length: 122
effective length of query: 376
effective length of database: 125,736,307
effective search space: 47276851432
effective search space used: 47276851432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)